Query 000673
Match_columns 1358
No_of_seqs 494 out of 4706
Neff 7.4
Searched_HMMs 29240
Date Tue Mar 26 17:02:22 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000673.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_445-449//hhsearch_pdb/000673hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 399.4 47.3 544 14-767 613-1158(1249)
2 2ymu_A WD-40 repeat protein; u 1.0 1 1 398.0 67.2 552 14-764 14-577 (577)
3 1nr0_A Actin interacting prote 1.0 1 1 364.6 62.0 578 5-766 5-610 (611)
4 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 360.0 45.3 532 14-767 655-1207(1249)
5 2ymu_A WD-40 repeat protein; u 1.0 1 1 354.1 62.5 505 53-765 6-537 (577)
6 1pgu_A Actin interacting prote 1.0 1 1 344.9 57.9 556 5-766 5-613 (615)
7 1nr0_A Actin interacting prote 1.0 1 1 338.2 58.8 532 6-707 40-610 (611)
8 1pgu_A Actin interacting prote 1.0 1 1 318.7 52.3 500 15-709 62-615 (615)
9 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 317.8 63.1 542 15-719 16-675 (902)
10 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 291.3 54.1 604 15-771 57-787 (902)
No 1
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=399.35 Aligned_cols=544 Identities=15% Similarity=0.116 Sum_probs=334.9
Q ss_pred CCCCEEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99821689998169997999907885999986678998532048630767577994531454213674321000014686
Q 000673 14 PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSN 93 (1358)
Q Consensus 14 ~p~h~Vtaia~Spdg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (1358)
++.+.|++++|+||+++|++|+.||+|++||+.+ .+....+.+|..+|++++|
T Consensus 613 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~-----~~~~~~~~~h~~~v~~~~~---------------------- 665 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAET-----GEKLLDIKAHEDEVLCCAF---------------------- 665 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-----CCEEEEECCCSSCEEEEEE----------------------
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC-----CCEEEEECCCCCCEEEEEE----------------------
T ss_conf 6666489999879999899994889499999899-----9788876067777899999----------------------
Q ss_pred CCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 34555699996999518991999988999369996279987899601220799983499995135776655665442235
Q 000673 94 VMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEG 173 (1358)
Q Consensus 94 ~~~~~s~d~~~LvS~s~Dg~l~iWdl~~G~c~~~~~~~~~~~~~s~i~~~~~~~~~~~l~c~~~~~~~~~~~~~~~~~~g 173 (1358)
++++.+|++++.||.+++||+.+|+++.....| ........+.+..+...+.+.+
T Consensus 666 -----s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~sg~----------------- 720 (1249)
T 3sfz_A 666 -----SSDDSYIATCSADKKVKIWDSATGKLVHTYDEH---SEQVNCCHFTNKSNHLLLATGS----------------- 720 (1249)
T ss_dssp -----CTTSSEEEEEETTSEEEEEETTTCCEEEEEECC---SSCEEEEEECSSSSCCEEEEEE-----------------
T ss_pred -----ECCCCEEEEEECCCEEEEEECCCCCEEEEECCC---CCCEEEEEEECCCCCEEEEEEE-----------------
T ss_conf -----269998999818995999877999368999589---9737999984089965999980-----------------
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCCCC
Q ss_conf 54333455788999973189990787329999970454468740689960277877312899965883799962568655
Q 000673 174 DLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHL 253 (1358)
Q Consensus 174 ~~~s~d~~~~~~~~~~~~I~i~D~~tl~v~~~l~s~~~~~~pis~l~v~~~~~d~~~~~~lvs~s~dg~vkvW~l~~~~~ 253 (1358)
.++.|.+||..+.+.+..+.. +.+++.+++|.. + +..+++++.||.+++|++.....
T Consensus 721 --------------~d~~v~vwd~~~~~~~~~~~~---h~~~v~~~~~sp---~---~~~l~s~s~dg~v~vwd~~~~~~ 777 (1249)
T 3sfz_A 721 --------------NDFFLKLWDLNQKECRNTMFG---HTNSVNHCRFSP---D---DELLASCSADGTLRLWDVRSANE 777 (1249)
T ss_dssp --------------TTSCEEEEETTSSSEEEEECC---CSSCEEEEEECS---S---TTEEEEEESSSEEEEEEGGGTEE
T ss_pred --------------CCCEEEEEECCCCCHHHEECC---CCCCEEEEEEEC---C---CCEEEEEECCCEEEEEECCCCCC
T ss_conf --------------897099998999634220127---779788999925---9---99899997898599996888865
Q ss_pred CCCCCCCCEECCCCCCCEEECCCCCCCCEEEEEECCCCEEEEEECCCE-EEEECCCCCCCCEEEEEECCEEEECCCCCCC
Q ss_conf 534687410027765523731685458208999028968999834806-9951488741001543204225425888873
Q 000673 254 DREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC-IFRLLGSGSTIGEICFVDNLFCLEGGSTNSY 332 (1358)
Q Consensus 254 ~~~~~~~l~e~~~~~~~i~~~~~~~~~v~~vs~s~dg~~i~~~~~~~~-i~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 332 (1358)
......... ..............+.+++|+++|+.++....... +|+. ..+..+..+ .......
T Consensus 778 ~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~-~~~~~~~~~----------~~~~~~~ 842 (1249)
T 3sfz_A 778 RKSINVKRF----FLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDI-HTSGLLAEI----------HTGHHST 842 (1249)
T ss_dssp EEEEECCCC----C--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEET-TTCCEEEEE----------ECSSSSC
T ss_pred CCEECCCCC----CCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCEEEEEE-CCCCCEEEE----------CCCCCCC
T ss_conf 530202321----0246776445650179999978998899975895999995-689723577----------4787776
Q ss_pred EEEEEEECCCCHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEE
Q ss_conf 69989610310000113455335532179999169968999980577556678852348755889970247573022158
Q 000673 333 VIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYL 412 (1358)
Q Consensus 333 ~~g~~fl~~~d~~~~~~~~~~~~~~~~~i~vw~~~g~~~l~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~i~f~~~~~~L 412 (1358)
+....|.+.+. .+++.+.+|.+.+|++..... +.....+...+..+.|.+++.++
T Consensus 843 v~~~~~sp~~~----------------~l~~~~~dg~v~vwd~~~~~~---------~~~~~~h~~~v~~v~~spdg~~l 897 (1249)
T 3sfz_A 843 IQYCDFSPYDH----------------LAVIALSQYCVELWNIDSRLK---------VADCRGHLSWVHGVMFSPDGSSF 897 (1249)
T ss_dssp CCEEEECSSTT----------------EEEEECSSSCEEEEETTTTEE---------EEEECCCSSCEEEEEECTTSSEE
T ss_pred EEEEEECCCCC----------------EEEEEECCCEEEEEECCCCCE---------EEECCCCCCCEEEEEECCCCCEE
T ss_conf 07999827888----------------899994798699998678956---------53227876656899998999989
Q ss_pred EEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCC-EEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99641003545655566708999567788999951-14984057630232066434678895334210342589511222
Q 000673 413 LRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQ-CRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSE 491 (1358)
Q Consensus 413 ~~v~s~~~~~~~~~~~~p~v~iws~~~~~~~~~~~-~~~l~~g~~~g~w~~~~~~~~~~~g~~i~~l~~t~~~~~i~~w~ 491 (1358)
++.. .++. +++|++.......... ...... .+..+.. .+........+..+.
T Consensus 898 ~s~s-----~dg~------v~vw~~~~~~~~~~~~~~~~~~~-----~~~~~~~-----------~~~~~~~~~~~~~~~ 950 (1249)
T 3sfz_A 898 LTAS-----DDQT------IRVWETKKVCKNSAIVLKQEIDV-----VFQENET-----------MVLAVDNIRGLQLIA 950 (1249)
T ss_dssp EEEE-----TTSC------EEEEEHHHHHSCCSSSEEEEEEE-----EEETTEE-----------EEEEEESSSSEEEEE
T ss_pred EEEE-----CCCE------EEEEECCCCCEEEEECCCCEEEE-----EECCCCC-----------EEEEECCCCCEEEEE
T ss_conf 9995-----8972------89887466520102113310368-----9759986-----------899813776248984
Q ss_pred CCCCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 45788789841212348971999785306752488799998389399999047666899988434587508899934887
Q 000673 492 HVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTG 571 (1358)
Q Consensus 492 ~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~s~~~~~~l~gH~~ 571 (1358)
.... .. ...+...+++..+.++..+ +++|+.+|.|.+|. ..+++....+.+|.+
T Consensus 951 ~~~~----~~---~~~~~~~i~~~~~sp~g~~----l~~g~~~g~i~i~d---------------~~~~~~~~~~~~h~~ 1004 (1249)
T 3sfz_A 951 GKTG----QI---DYLPEAQVSCCCLSPHLEY----VAFGDEDGAIKIIE---------------LPNNRVFSSGVGHKK 1004 (1249)
T ss_dssp ESSC----CE---EEECCSCEEEEEECTTSSE----EEEEETTSCCEEEE---------------TTTTSCEEECCCCSS
T ss_pred CCCC----EE---EECCCCCEEEEEECCCCCE----EEEECCCCCEEEEE---------------CCCCCEEEECCCCCC
T ss_conf 4765----08---9725672789999589977----99986999889997---------------578723443036777
Q ss_pred CEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCE
Q ss_conf 78999981045688787668599999699929999489971799980279868999969999999999959999689929
Q 000673 572 AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSV 651 (1358)
Q Consensus 572 ~V~~L~~sp~~~~pdg~~~~~~LvSgs~D~tI~iWDl~tg~~l~~l~~h~~~V~~l~~sPd~~~~~~g~~l~S~s~D~sV 651 (1358)
.|+++.|+ |+| +++++++.|++|++||+.+++.. .+..|...|.++.|+|+ ..+++++.|++|
T Consensus 1005 ~v~~l~~s-----~dg----~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~-------~~l~~~~~dg~v 1067 (1249)
T 3sfz_A 1005 AVRHIQFT-----ADG----KTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQD-------SRLLSWSFDGTV 1067 (1249)
T ss_dssp CCCCEEEC-----SSS----SCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSS-------SEEEEEESSSEE
T ss_pred CEEEEEEC-----CCC----CEEEEECCCCEEEEEECCCCCEE-EEECCCCCEEEEEECCC-------CCEEEEECCCCE
T ss_conf 16899998-----999----98999869987999987999668-98527873899999089-------958999788968
Q ss_pred EEEECCCCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCC
Q ss_conf 99988998289995289999389999599999999735886324999859999799990999993889755787663265
Q 000673 652 ALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGI 731 (1358)
Q Consensus 652 ~lwdl~~~~~i~~l~~H~~~V~~i~~~pd~~~Li~g~~d~sgssD~DgtI~IWdl~tg~~~~~l~GH~~~v~~~~~~~~~ 731 (1358)
++||+.+++++..+.+|...+.+++|+|++.++++++. |++|++||+.++++...+.+|...+....|++..
T Consensus 1068 ~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~--------d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg 1139 (1249)
T 3sfz_A 1068 KVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSA--------DKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDG 1139 (1249)
T ss_dssp EEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECC--------SSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSS
T ss_pred EEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEECC--------CCCEEEEECCCCCEEEEECCCCCCEEEEEECCCC
T ss_conf 99888988655887466884899999899998999849--------9948998789850012550687767999997999
Q ss_pred CCCEEECCEECCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 431000422318611368852323699399994888
Q 000673 732 SMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 767 (1358)
Q Consensus 732 ~~~~isgs~~~g~~~~s~~l~~~~~D~tir~W~~~~ 767 (1358)
.++++++ .|+++++|++..
T Consensus 1140 ------------~~lat~~-----~dg~i~vwd~~~ 1158 (1249)
T 3sfz_A 1140 ------------ILLATGD-----DNGEIRIWNVSD 1158 (1249)
T ss_dssp ------------SEEEEEE-----TTSCCCEEESSS
T ss_pred ------------CEEEEEE-----CCCEEEEEECCC
T ss_conf ------------9899982-----899799998899
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=398.02 Aligned_cols=552 Identities=17% Similarity=0.184 Sum_probs=385.4
Q ss_pred CCCCEEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99821689998169997999907885999986678998532048630767577994531454213674321000014686
Q 000673 14 PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSN 93 (1358)
Q Consensus 14 ~p~h~Vtaia~Spdg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (1358)
.++..|+|++|||||++||||+.||+|++||.. .+++..+.||+++|++++|
T Consensus 14 GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~------~~~~~~l~gh~~~V~~l~f---------------------- 65 (577)
T 2ymu_A 14 AHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN------GQLLQTLTGHSSSVWGVAF---------------------- 65 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEECTT------SCEEEEEECCSSCEEEEEE----------------------
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEECC------CCEEEEEECCCCCEEEEEE----------------------
T ss_conf 899857999998998999999389989999799------9789999689899899999----------------------
Q ss_pred CCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCCCCEEEEEEECCCCC-CCCC-------
Q ss_conf 34555699996999518991999988999369996279987899601220799983499995135776-6556-------
Q 000673 94 VMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQ-LSDH------- 165 (1358)
Q Consensus 94 ~~~~~s~d~~~LvS~s~Dg~l~iWdl~~G~c~~~~~~~~~~~~~s~i~~~~~~~~~~~l~c~~~~~~~-~~~~------- 165 (1358)
+||+.+|+|++.|++|++||+ +|+++.....| .....-..+.+ +...+.+.+.+... +.+.
T Consensus 66 -----spdg~~las~~~d~~i~vWd~-~~~~~~~~~~~---~~~v~~~~~s~--d~~~l~~~~~d~~~~~~~~~~~~~~~ 134 (577)
T 2ymu_A 66 -----SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH---SSSVRGVAFSP--DGQTIASASDDKTVKLWNRNGQLLQT 134 (577)
T ss_dssp -----CTTSSEEEEEETTSCEEEEET-TSCEEEEECCC---SSCEEEEEECT--TSSEEEEEETTSCEEEEETTCCEEEE
T ss_pred -----CCCCCEEEEEECCCEEEEEEC-CCCEEEEEECC---CCCEEEEEECC--CCCEEEEECCCCCEEECCCCCCEEEE
T ss_conf -----899999999969897999989-99789999789---99889999989--99989998079833520235520011
Q ss_pred --CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCEE
Q ss_conf --654422355433345578899997318999078732999997045446874068996027787731289996588379
Q 000673 166 --HSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQ 243 (1358)
Q Consensus 166 --~~~~~~~g~~~s~d~~~~~~~~~~~~I~i~D~~tl~v~~~l~s~~~~~~pis~l~v~~~~~d~~~~~~lvs~s~dg~v 243 (1358)
.....+.....+.|............+.+|+... ........ +..++.++.+.. + +..+++++.|+.+
T Consensus 135 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~v~~~~~~~---~---~~~l~~~~~d~~v 204 (577)
T 2ymu_A 135 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTG---HSSSVWGVAFSP---D---GQTIASASDDKTV 204 (577)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS-CEEEEEEC---CSSCEEEEEECT---T---SSCEEEEETTSEE
T ss_pred CCCCCCCEEEEEEECCCCCCEECCCCCCEECCCCCE-EEEEECCC---CCCCEEEEEECC---C---CCEEEEECCCCEE
T ss_conf 047777435554203776320025553100000000-00000268---776356654169---9---7789998599989
Q ss_pred EEECCCCCCCCCCCCCCCEECCCCCCCEEECCCCCCCCEEEEEECCCCEEEEEECCCE--EEEECCCCCCCCEEEEEECC
Q ss_conf 9962568655534687410027765523731685458208999028968999834806--99514887410015432042
Q 000673 244 LVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC--IFRLLGSGSTIGEICFVDNL 321 (1358)
Q Consensus 244 kvW~l~~~~~~~~~~~~l~e~~~~~~~i~~~~~~~~~v~~vs~s~dg~~i~~~~~~~~--i~d~~~~~~~~~~~~~~~~~ 321 (1358)
++|+.... .+.....|...+.+++|+++++.++.+..++. +|+. .+..+..+
T Consensus 205 ~~w~~~~~------------------~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~--~~~~~~~~------ 258 (577)
T 2ymu_A 205 KLWNRNGQ------------------LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR--NGQLLQTL------ 258 (577)
T ss_dssp EEECTTSC------------------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT--TSCEEEEE------
T ss_pred EEEECCCC------------------EEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC--CCCEEEEE------
T ss_conf 99949996------------------89999468898899999799999999918998999959--99799998------
Q ss_pred EEEECCCCCCCEEEEEEECCCCHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 25425888873699896103100001134553355321799991699689999805775566788523487558899702
Q 000673 322 FCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKF 401 (1358)
Q Consensus 322 l~~~~~~~~~~~~g~~fl~~~d~~~~~~~~~~~~~~~~~i~vw~~~g~~~l~~l~~~~~~~~~~~~~~i~~~~~~~~~~~ 401 (1358)
..+ ...+.+..|.+++. .++..+.++.+.+|+... ..+.....+...+.
T Consensus 259 ---~~~--~~~v~~v~~~~d~~----------------~l~~~~~d~~i~~w~~~~----------~~~~~~~~h~~~v~ 307 (577)
T 2ymu_A 259 ---TGH--SSSVNGVAFRPDGQ----------------TIASASDDKTVKLWNRNG----------QLLQTLTGHSSSVW 307 (577)
T ss_dssp ---CCC--SSCEEEEEECTTSS----------------EEEEEETTSCEEEEETTS----------CEEEEECCCSSCEE
T ss_pred ---ECC--CCCEEEEEECCCCC----------------EEEEEECCCEEEEEECCC----------CEEEEEECCCCCEE
T ss_conf ---068--89879999968999----------------999995999799994899----------58999706889769
Q ss_pred EEEEEECCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 47573022158996410035456555667089995677889999511498405763023206643467889533421034
Q 000673 402 SIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLT 481 (1358)
Q Consensus 402 ~i~f~~~~~~L~~v~s~~~~~~~~~~~~p~v~iws~~~~~~~~~~~~~~l~~g~~~g~w~~~~~~~~~~~g~~i~~l~~t 481 (1358)
.+.|.+++.++++.. .++. +++|+.... ....+ .+.....+. ....+++. .++..
T Consensus 308 ~~~~~~~~~~l~t~~-----~d~~------i~~w~~~~~------~~~~~-~~~~~~v~~----~~~s~~g~---~l~~~ 362 (577)
T 2ymu_A 308 GVAFSPDGQTIASAS-----DDKT------VKLWNRNGQ------HLQTL-TGHSSSVWG----VAFSPDGQ---TIASA 362 (577)
T ss_dssp EEEECTTSSEEEEEE-----TTSC------EEEEETTSC------EEEEE-CCCSSCEEE----EEECTTSS---EEEEE
T ss_pred EEEECCCCCEEEEEE-----CCCE------EEEEECCCC------EEEEE-ECCCCCEEE----EEECCCCC---EEEEE
T ss_conf 999999999999996-----9995------999969997------25787-478897799----99989999---99999
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCE
Q ss_conf 25895112224578878984121234897199978530675248879999838939999904766689998843458750
Q 000673 482 FCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHV 561 (1358)
Q Consensus 482 ~~~~~i~~w~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~s~~ 561 (1358)
..++.+++|+.. ++....+.+|...|+++.+.++..+ +++|+.|+.|++|. . +++
T Consensus 363 ~~dg~v~~~~~~-----~~~~~~~~~~~~~v~~~~~s~dg~~----l~~~~~d~~v~~~~---------------~-~~~ 417 (577)
T 2ymu_A 363 SDDKTVKLWNRN-----GQLLQTLTGHSSSVRGVAFSPDGQT----IASASDDKTVKLWN---------------R-NGQ 417 (577)
T ss_dssp ETTSEEEEEETT-----CCEEEEEECCSSCEEEEEECTTSSC----EEEEETTSEEEEEC---------------T-TCC
T ss_pred ECCCEEEEECCC-----CCEEEEECCCCCCEEEEEECCCCCE----EEEEECCCEEEEEE---------------C-CCC
T ss_conf 699989999089-----9789985278897489999899999----99994999899996---------------9-997
Q ss_pred EEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCE
Q ss_conf 88999348877899998104568878766859999969992999948997179998027986899996999999999995
Q 000673 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDC 641 (1358)
Q Consensus 562 ~~~~l~gH~~~V~~L~~sp~~~~pdg~~~~~~LvSgs~D~tI~iWDl~tg~~l~~l~~h~~~V~~l~~sPd~~~~~~g~~ 641 (1358)
....+.+|...|++++|+ ||+ +++++++.|++|++||. +++.+..+.+|..+|+++.|+|+ +++
T Consensus 418 ~~~~~~~~~~~v~~~~~s-----~d~----~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd------~~~ 481 (577)
T 2ymu_A 418 LLQTLTGHSSSVWGVAFS-----PDD----QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPD------GQT 481 (577)
T ss_dssp EEEEEECCSSCEEEEEEC-----TTS----SEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTT------SCE
T ss_pred EEEEECCCCCCEEEEEEC-----CCC----CEEEEECCCCEEEEEEC-CCCEEEEECCCCCCEEEEEECCC------CCE
T ss_conf 898962889975799998-----999----99999939998999979-99889997278997789999699------999
Q ss_pred EEEEECCCCEEEEECCCCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEEECCCCC
Q ss_conf 99996899299998899828999528999938999959999999973588632499985999979999099999388975
Q 000673 642 FLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASH 721 (1358)
Q Consensus 642 l~S~s~D~sV~lwdl~~~~~i~~l~~H~~~V~~i~~~pd~~~Li~g~~d~sgssD~DgtI~IWdl~tg~~~~~l~GH~~~ 721 (1358)
+++++.|++|++||. ++++++.+.+|...|++++|+|++++|++++. |+.|++||. ++++++++.||.+.
T Consensus 482 las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~--------dg~v~lwd~-~~~~~~~~~~h~~~ 551 (577)
T 2ymu_A 482 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASD--------DKTVKLWNR-NGQLLQTLTGHSSS 551 (577)
T ss_dssp EEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEET--------TSEEEEECT-TSCEEEEEECCSSC
T ss_pred EEEEECCCEEEEECC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEEC--------CCEEEEEEC-CCCEEEEECCCCCC
T ss_conf 999919897999939-99789998679999899999189999999989--------699999969-99789897188888
Q ss_pred EEEEEEECCCCCCEEECCEECCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 5787663265431000422318611368852323699399994
Q 000673 722 SMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1358)
Q Consensus 722 v~~~~~~~~~~~~~isgs~~~g~~~~s~~l~~~~~D~tir~W~ 764 (1358)
|..+.|+++ |.++++ .+.|+++|+||
T Consensus 552 v~~~~fs~d------------g~~l~s-----~~~D~~i~~Wd 577 (577)
T 2ymu_A 552 VWGVAFSPD------------GQTIAS-----ASSDKTVKLWN 577 (577)
T ss_dssp EEEEEECTT------------SSCEEE-----EETTSCEEEEC
T ss_pred EEEEEECCC------------CCEEEE-----EECCCEEEEEC
T ss_conf 789999689------------999999-----90899999969
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=364.63 Aligned_cols=578 Identities=10% Similarity=0.036 Sum_probs=359.1
Q ss_pred EEEEEECCCCCCC--EEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCC
Q ss_conf 4899908999982--16899981699979999078859999866789985320486307675779945314542136743
Q 000673 5 SVACIWSGTPPSH--RVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGK 82 (1358)
Q Consensus 5 ~~~~lw~~~~p~h--~Vtaia~Spdg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~~~~~~~~~~ 82 (1358)
....+|.+.|.++ .+.+++|+|||+.|++++ ++.|++|++.+ ......+.||+.+|++++|
T Consensus 5 ~~~~~~~~~~~~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~-----~~~~~~~~~h~~~v~~~~~----------- 67 (611)
T 1nr0_A 5 SQTALFPSLPRTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGS-----LTDTEIYTEHSHQTTVAKT----------- 67 (611)
T ss_dssp EEEEEECCCCCCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTC-----SSCCEEECCCSSCEEEEEE-----------
T ss_pred CCCCEECCCCCCCCCCEEEEEECCCCCEEEECC-CCEEEEECCCC-----CCCCEEECCCCCCEEEEEE-----------
T ss_conf 116279899974068236976679999799679-99799945787-----2427376589986599999-----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEE--EEEECCCCCCCCCEEEEECCCCCCEEEEEEECCC-
Q ss_conf 2100001468634555699996999518991999988999369--9962799878996012207999834999951357-
Q 000673 83 AEHWKAENSSNVMGKSSLDNGALISACTDGVLCVWSRSSGHCR--RRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDT- 159 (1358)
Q Consensus 83 ~~~~~~~~~~~~~~~~s~d~~~LvS~s~Dg~l~iWdl~~G~c~--~~~~~~~~~~~~s~i~~~~~~~~~~~l~c~~~~~- 159 (1358)
+|++.+|+|++.||++++||+.++.+. .....| .. .+..+..+++...+...+.+.
T Consensus 68 ----------------spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~---~~--~v~~v~fs~dg~~l~~~~~~~~ 126 (611)
T 1nr0_A 68 ----------------SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVF---SG--PVKDISWDSESKRIAAVGEGRE 126 (611)
T ss_dssp ----------------CTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECS---SS--CEEEEEECTTSCEEEEEECCSS
T ss_pred ----------------CCCCCEEEEEECCCCEEEEECCCCCCEEEEEECCC---CC--CEEEEEECCCCCEEEEEECCCC
T ss_conf ----------------99996899994899789948989841566762255---78--4489998999997999989977
Q ss_pred ----CCCCC--------CCCCCCCCCCCCCCCCCC-CCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEECCC
Q ss_conf ----76655--------665442235543334557-88999973189990787329999970454468740689960277
Q 000673 160 ----NQLSD--------HHSFESVEGDLVSEDKEV-PMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGE 226 (1358)
Q Consensus 160 ----~~~~~--------~~~~~~~~g~~~s~d~~~-~~~~~~~~~I~i~D~~tl~v~~~l~s~~~~~~pis~l~v~~~~~ 226 (1358)
..+.+ ..+...+....++.+... ......++.|.+||..+.+.+.++.. |.+++.+++|.+
T Consensus 127 ~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~---H~~~V~~v~fsp--- 200 (611)
T 1nr0_A 127 RFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE---HTKFVHSVRYNP--- 200 (611)
T ss_dssp CSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC---CSSCEEEEEECT---
T ss_pred CEEEEEEEECCCCCCEECCCCCCCEEEEECCCCCEEEEEEECCCEEEEEECCCCEEEEEECC---CCCCEEEEEECC---
T ss_conf 36699996389976325478898369998899982999992898099997999757665200---257169999979---
Q ss_pred CCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCEECCCCCCCEEECCCCCCCCEEEEEECCCCEEEEEECCCE--EEE
Q ss_conf 877312899965883799962568655534687410027765523731685458208999028968999834806--995
Q 000673 227 DMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC--IFR 304 (1358)
Q Consensus 227 d~~~~~~lvs~s~dg~vkvW~l~~~~~~~~~~~~l~e~~~~~~~i~~~~~~~~~v~~vs~s~dg~~i~~~~~~~~--i~d 304 (1358)
| +..+++++.|+.+++|++.... ....+.+. .+ ...+|.+.+.+++|+|+++.++.++.|+. +|+
T Consensus 201 d---g~~las~s~D~~i~lwd~~~g~----~~~~~~~~-----~~-~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd 267 (611)
T 1nr0_A 201 D---GSLFASTGGDGTIVLYNGVDGT----KTGVFEDD-----SL-KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN 267 (611)
T ss_dssp T---SSEEEEEETTSCEEEEETTTCC----EEEECBCT-----TS-SSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred C---CCEEEEEECCCCEEEEECCCCC----EEEEECCC-----CC-CCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
T ss_conf 9---9989999899919998899982----86651366-----43-2356678789999979999999990898099996
Q ss_pred ECCCCCCCCEEEEEECCEEEECCCCCCCEEEEEEECCCCHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCC
Q ss_conf 14887410015432042254258888736998961031000011345533553217999916996899998057755667
Q 000673 305 LLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDY 384 (1358)
Q Consensus 305 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~fl~~~d~~~~~~~~~~~~~~~~~i~vw~~~g~~~l~~l~~~~~~~~~ 384 (1358)
+ ..+..+..+. ..........+..| .+. .++..+.+|.+.+|+.....
T Consensus 268 ~-~~~~~~~~~~--------~~~~~~~~~~~~~~--~~~----------------~l~s~s~d~~i~~~~~~~~~----- 315 (611)
T 1nr0_A 268 V-ATLKVEKTIP--------VGTRIEDQQLGIIW--TKQ----------------ALVSISANGFINFVNPELGS----- 315 (611)
T ss_dssp T-TTTEEEEEEE--------CCSSGGGCEEEEEE--CSS----------------CEEEEETTCCEEEEETTTTE-----
T ss_pred C-CCCCEEEEEC--------CCCCCCCEEEEEEE--CCC----------------EEEEEECCCCEEEEECCCCC-----
T ss_conf 8-8870134404--------78876640689997--388----------------79999589968999688997-----
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEECC
Q ss_conf 88523487558899702475730221589964100354565556670899956778899995114984057630232066
Q 000673 385 EPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNS 464 (1358)
Q Consensus 385 ~~~~~i~~~~~~~~~~~~i~f~~~~~~L~~v~s~~~~~~~~~~~~p~v~iws~~~~~~~~~~~~~~l~~g~~~g~w~~~~ 464 (1358)
.......+...+..+.|.+++.++++.. .++. +++|++... ...+.+..+.......+
T Consensus 316 ----~~~~~~gh~~~v~~l~~spdg~~l~s~s-----~D~~------v~~Wd~~~~-----~~~~~~~~~h~~~v~~~-- 373 (611)
T 1nr0_A 316 ----IDQVRYGHNKAITALSSSADGKTLFSAD-----AEGH------INSWDISTG-----ISNRVFPDVHATMITGI-- 373 (611)
T ss_dssp ----EEEEECCCSSCEEEEEECTTSSEEEEEE-----TTSC------EEEEETTTC-----CEEECSSCSCSSCEEEE--
T ss_pred ----CCEEECCCCCCEEEEEEECCCCEEEEEE-----CCCC------EEEEECCCC-----CEEEECCCCCCCEEEEE--
T ss_conf ----4469837888889999918999899995-----8984------999978879-----25632166776507899--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEEECC
Q ss_conf 43467889533421034258951122245788789841212348971999785306752488799998389399999047
Q 000673 465 TFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDL 544 (1358)
Q Consensus 465 ~~~~~~~g~~i~~l~~t~~~~~i~~w~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~ 544 (1358)
...+++ .+.....++.+++|+.............. .......+..+.++... ++.+ .++.+.+|.
T Consensus 374 --~~s~~~----~l~s~s~d~~v~~w~~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~----~~~~-~~~~v~~~~--- 438 (611)
T 1nr0_A 374 --KTTSKG----DLFTVSWDDHLKVVPAGGSGVDSSKAVAN-KLSSQPLGLAVSADGDI----AVAA-CYKHIAIYS--- 438 (611)
T ss_dssp --EECTTS----CEEEEETTTEEEEECSSSSSSCTTSCCEE-ECSSCEEEEEECTTSSC----EEEE-ESSEEEEEE---
T ss_pred --EECCCC----CEEEEECCCCEEEEECCCCCCCCCCEEEE-ECCCCCCEEEEECCCCE----EEEE-ECCEEEEEE---
T ss_conf --987899----69999848966895468854356521200-14899707998079969----9999-676399984---
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCE--EEEEECCCC
Q ss_conf 666899988434587508899934887789999810456887876685999996999299994899717--999802798
Q 000673 545 FERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNL--ITVMHHHVA 622 (1358)
Q Consensus 545 ~~~~~~~~~~~d~~s~~~~~~l~gH~~~V~~L~~sp~~~~pdg~~~~~~LvSgs~D~tI~iWDl~tg~~--l~~l~~h~~ 622 (1358)
.++ ...+ .|...+++++|+ ||| +++++|+.|++|++||+..+.. ... .+|.+
T Consensus 439 --------------~~~-~~~~-~~~~~v~~va~s-----pdg----~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~ 492 (611)
T 1nr0_A 439 --------------HGK-LTEV-PISYNSSCVALS-----NDK----QFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPA 492 (611)
T ss_dssp --------------TTE-EEEE-ECSSCEEEEEEC-----TTS----CEEEEEETTSEEEEEEEETTEEEEEEE-EECSS
T ss_pred --------------CCC-EEEE-ECCCCCEEEEEE-----CCC----CEEEEECCCCEEEEEECCCCCEEEEEC-CCCCC
T ss_conf --------------894-3464-068895499992-----899----899996899739999945992224101-57788
Q ss_pred CEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCC-CCEEEE--ECCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCC
Q ss_conf 689999699999999999599996899299998899-828999--52899993899995999999997358863249998
Q 000673 623 PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET-LRVERM--FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVD 699 (1358)
Q Consensus 623 ~V~~l~~sPd~~~~~~g~~l~S~s~D~sV~lwdl~~-~~~i~~--l~~H~~~V~~i~~~pd~~~Li~g~~d~sgssD~Dg 699 (1358)
.|+++.|+|+ ++++++++.|++|++|++.+ +++... +.+|...|++++|+|++++|++++. | +
T Consensus 493 ~v~~v~fspd------g~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~------D--~ 558 (611)
T 1nr0_A 493 EITSVAFSNN------GAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL------D--N 558 (611)
T ss_dssp CEEEEEECTT------SSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEET------T--S
T ss_pred CEEEEEECCC------CCEEEEECCCCCEEEEECCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEEEEC------C--C
T ss_conf 6079999899------998999948998999885778722321026404664258998998997999979------9--7
Q ss_pred EEEEEECCCCE-EE-EEEECC-CCCEEEEEEECCCCCCEEECCEECCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 59999799990-99-999388-975578766326543100042231861136885232369939999488
Q 000673 700 VLFIWDVKTGA-RE-RVLRGT-ASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1358)
Q Consensus 700 tI~IWdl~tg~-~~-~~l~GH-~~~v~~~~~~~~~~~~~isgs~~~g~~~~s~~l~~~~~D~tir~W~~~ 766 (1358)
+|++|+++++. .. ..+.|| ...+..+.|+++.. +++++ .|+++|+|+++
T Consensus 559 ~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~--l~s~~----------------~D~~i~lW~~~ 610 (611)
T 1nr0_A 559 SVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT--IVSAG----------------QDSNIKFWNVP 610 (611)
T ss_dssp CEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE--EEEEE----------------TTSCEEEEECC
T ss_pred CEEEEECCCCCCCCCHHHCCCCCCCEEEEEECCCCE--EEEEC----------------CCCCEEEEECC
T ss_conf 299997887555632644467656711899858997--99952----------------88778998444
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=359.99 Aligned_cols=532 Identities=14% Similarity=0.127 Sum_probs=321.9
Q ss_pred CCCCEEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99821689998169997999907885999986678998532048630767577994531454213674321000014686
Q 000673 14 PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSN 93 (1358)
Q Consensus 14 ~p~h~Vtaia~Spdg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (1358)
.+...|++++|+||+++|++|+.||+|++||+.+ .++...+.+|..+|+++.|.+.
T Consensus 655 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~-----~~~~~~~~~~~~~v~~~~~~~~------------------- 710 (1249)
T 3sfz_A 655 AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT-----GKLVHTYDEHSEQVNCCHFTNK------------------- 710 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-----CCEEEEEECCSSCEEEEEECSS-------------------
T ss_pred CCCCCEEEEEEECCCCEEEEEECCCEEEEEECCC-----CCEEEEECCCCCCEEEEEEECC-------------------
T ss_conf 6777789999926999899981899599987799-----9368999589973799998408-------------------
Q ss_pred CCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 34555699996999518991999988999369996279987899601220799983499995135776655665442235
Q 000673 94 VMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEG 173 (1358)
Q Consensus 94 ~~~~~s~d~~~LvS~s~Dg~l~iWdl~~G~c~~~~~~~~~~~~~s~i~~~~~~~~~~~l~c~~~~~~~~~~~~~~~~~~g 173 (1358)
.++.++++++.||.+++||+.+++++.....| ........+.+ +...+.+.+
T Consensus 711 ------~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h---~~~v~~~~~sp--~~~~l~s~s----------------- 762 (1249)
T 3sfz_A 711 ------SNHLLLATGSNDFFLKLWDLNQKECRNTMFGH---TNSVNHCRFSP--DDELLASCS----------------- 762 (1249)
T ss_dssp ------SSCCEEEEEETTSCEEEEETTSSSEEEEECCC---SSCEEEEEECS--STTEEEEEE-----------------
T ss_pred ------CCCEEEEEEECCCEEEEEECCCCCHHHEECCC---CCCEEEEEEEC--CCCEEEEEE-----------------
T ss_conf ------99659999808970999989996342201277---79788999925--999899997-----------------
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCC----------CCCCCEEEEEECCCCCCCCEEEEEECCCCEE
Q ss_conf 543334557889999731899907873299999704544----------6874068996027787731289996588379
Q 000673 174 DLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLS----------IGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQ 243 (1358)
Q Consensus 174 ~~~s~d~~~~~~~~~~~~I~i~D~~tl~v~~~l~s~~~~----------~~pis~l~v~~~~~d~~~~~~lvs~s~dg~v 243 (1358)
.++.|.+||..+......+...... ...+.+++|.. + +..+++++ ++.+
T Consensus 763 --------------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---d---g~~l~~~~-~~~v 821 (1249)
T 3sfz_A 763 --------------ADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA---D---GDKIIVAA-KNKV 821 (1249)
T ss_dssp --------------SSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCT---T---SSEEEEEE-TTEE
T ss_pred --------------CCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECC---C---CCEEEEEC-CCCE
T ss_conf --------------8985999968888655302023210246776445650179999978---9---98899975-8959
Q ss_pred EEECCCCCCCCCCCCCCCEECCCCCCCEEECCCCCCCCEEEEEECCCCEEEEEECCCE--EEEECCCCCCCCEEEEEECC
Q ss_conf 9962568655534687410027765523731685458208999028968999834806--99514887410015432042
Q 000673 244 LVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC--IFRLLGSGSTIGEICFVDNL 321 (1358)
Q Consensus 244 kvW~l~~~~~~~~~~~~l~e~~~~~~~i~~~~~~~~~v~~vs~s~dg~~i~~~~~~~~--i~d~~~~~~~~~~~~~~~~~ 321 (1358)
.+|++.... . ......+|...+..+.|+++++.++.+..++. +|+. ..+..+..+
T Consensus 822 ~~~d~~~~~--------------~--~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~-~~~~~~~~~------ 878 (1249)
T 3sfz_A 822 LLFDIHTSG--------------L--LAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNI-DSRLKVADC------ 878 (1249)
T ss_dssp EEEETTTCC--------------E--EEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEET-TTTEEEEEE------
T ss_pred EEEEECCCC--------------C--EEEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCCEEEEC------
T ss_conf 999956897--------------2--35774787776079998278888999947986999986-789565322------
Q ss_pred EEEECCCCCCCEEEEEEECCCCHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 25425888873699896103100001134553355321799991699689999805775566788523487558899702
Q 000673 322 FCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKF 401 (1358)
Q Consensus 322 l~~~~~~~~~~~~g~~fl~~~d~~~~~~~~~~~~~~~~~i~vw~~~g~~~l~~l~~~~~~~~~~~~~~i~~~~~~~~~~~ 401 (1358)
.+ ....+.+..|.+++. .++..+.+|.+.+|++......... ......
T Consensus 879 ---~~--h~~~v~~v~~spdg~----------------~l~s~s~dg~v~vw~~~~~~~~~~~-----------~~~~~~ 926 (1249)
T 3sfz_A 879 ---RG--HLSWVHGVMFSPDGS----------------SFLTASDDQTIRVWETKKVCKNSAI-----------VLKQEI 926 (1249)
T ss_dssp ---CC--CSSCEEEEEECTTSS----------------EEEEEETTSCEEEEEHHHHHSCCSS-----------SEEEEE
T ss_pred ---CC--CCCCEEEEEECCCCC----------------EEEEEECCCEEEEEECCCCCEEEEE-----------CCCCEE
T ss_conf ---78--766568999989999----------------8999958972898874665201021-----------133103
Q ss_pred EEEEEECCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 47573022158996410035456555667089995677889999511498405763023206643467889533421034
Q 000673 402 SIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLT 481 (1358)
Q Consensus 402 ~i~f~~~~~~L~~v~s~~~~~~~~~~~~p~v~iws~~~~~~~~~~~~~~l~~g~~~g~w~~~~~~~~~~~g~~i~~l~~t 481 (1358)
...+.+....+.... .... +.++..... .......+. .. .....+++. .++..
T Consensus 927 ~~~~~~~~~~~~~~~-----~~~~------~~~~~~~~~------~~~~~~~~~--i~-----~~~~sp~g~---~l~~g 979 (1249)
T 3sfz_A 927 DVVFQENETMVLAVD-----NIRG------LQLIAGKTG------QIDYLPEAQ--VS-----CCCLSPHLE---YVAFG 979 (1249)
T ss_dssp EEEEETTEEEEEEEE-----SSSS------EEEEEESSC------CEEEECCSC--EE-----EEEECTTSS---EEEEE
T ss_pred EEEECCCCCEEEEEC-----CCCC------EEEEECCCC------EEEECCCCC--EE-----EEEECCCCC---EEEEE
T ss_conf 689759986899813-----7762------489844765------089725672--78-----999958997---79998
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCE
Q ss_conf 25895112224578878984121234897199978530675248879999838939999904766689998843458750
Q 000673 482 FCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHV 561 (1358)
Q Consensus 482 ~~~~~i~~w~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~s~~ 561 (1358)
..++.+.+|+..+. .....+.+|...|+++.+.++..+ +++|+.||.|++|.+ .+++
T Consensus 980 ~~~g~i~i~d~~~~----~~~~~~~~h~~~v~~l~~s~dg~~----l~s~~~dg~i~vwd~---------------~~~~ 1036 (1249)
T 3sfz_A 980 DEDGAIKIIELPNN----RVFSSGVGHKKAVRHIQFTADGKT----LISSSEDSVIQVWNW---------------QTGD 1036 (1249)
T ss_dssp ETTSCCEEEETTTT----SCEEECCCCSSCCCCEEECSSSSC----EEEECSSSBEEEEET---------------TTTE
T ss_pred CCCCCEEEEECCCC----CEEEECCCCCCCEEEEEECCCCCE----EEEECCCCEEEEEEC---------------CCCC
T ss_conf 69998899975787----234430367771689999899998----999869987999987---------------9996
Q ss_pred EEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCE
Q ss_conf 88999348877899998104568878766859999969992999948997179998027986899996999999999995
Q 000673 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDC 641 (1358)
Q Consensus 562 ~~~~l~gH~~~V~~L~~sp~~~~pdg~~~~~~LvSgs~D~tI~iWDl~tg~~l~~l~~h~~~V~~l~~sPd~~~~~~g~~ 641 (1358)
.. .+.+|...|.++.|+ ++ ..+++++.|++|++||+.++++...+.+|.+.|+++.|+|+ +..
T Consensus 1037 ~~-~~~~~~~~v~~~~~~-----~~-----~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d------~~~ 1099 (1249)
T 3sfz_A 1037 YV-FLQAHQETVKDFRLL-----QD-----SRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSD------ATK 1099 (1249)
T ss_dssp EE-CCBCCSSCEEEEEEC-----SS-----SEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSS------SSS
T ss_pred EE-EEECCCCCEEEEEEC-----CC-----CCEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCC------CCE
T ss_conf 68-985278738999990-----89-----95899978896899888988655887466884899999899------998
Q ss_pred EEEEECCCCEEEEECCCCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEE------
Q ss_conf 99996899299998899828999528999938999959999999973588632499985999979999099999------
Q 000673 642 FLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL------ 715 (1358)
Q Consensus 642 l~S~s~D~sV~lwdl~~~~~i~~l~~H~~~V~~i~~~pd~~~Li~g~~d~sgssD~DgtI~IWdl~tg~~~~~l------ 715 (1358)
+++++.|++|++||+.+++++..+.+|...|++++|+|++.++++++.| +.|++||++++++...+
T Consensus 1100 l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~d--------g~i~vwd~~~~~~~~~~~~~~~~ 1171 (1249)
T 3sfz_A 1100 FSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDN--------GEIRIWNVSDGQLLHSCAPISVE 1171 (1249)
T ss_dssp CEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETT--------SCCCEEESSSSCCCCCCCCCC--
T ss_pred EEEECCCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECC--------CEEEEEECCCCCEEEEECCCCCC
T ss_conf 9998499948998789850012550687767999997999989998289--------97999988999457885144444
Q ss_pred ---ECCCCCEEEEEEECCCCCCEEECCEECCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf ---3889755787663265431000422318611368852323699399994888
Q 000673 716 ---RGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 767 (1358)
Q Consensus 716 ---~GH~~~v~~~~~~~~~~~~~isgs~~~g~~~~s~~l~~~~~D~tir~W~~~~ 767 (1358)
.+|...+....|++. |.++++ .++++++|++..
T Consensus 1172 ~~~~~~~~~v~~l~fs~d------------g~~l~s-------~~g~v~vwd~~~ 1207 (1249)
T 3sfz_A 1172 EGTATHGGWVTDVCFSPD------------SKTLVS-------AGGYLKWWNVAT 1207 (1249)
T ss_dssp -----CCSCCCEEEECTT------------SSCEEE-------ESSSEEEBCSSS
T ss_pred CCCCCCCCEEEEEEECCC------------CCEEEE-------CCCEEEEEECCC
T ss_conf 210256742899999789------------998997-------798599989888
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=354.14 Aligned_cols=505 Identities=17% Similarity=0.183 Sum_probs=308.5
Q ss_pred CCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCC
Q ss_conf 32048630767577994531454213674321000014686345556999969995189919999889993699962799
Q 000673 53 IKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPP 132 (1358)
Q Consensus 53 ~~~~~~L~GH~~~Vt~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~LvS~s~Dg~l~iWdl~~G~c~~~~~~~~ 132 (1358)
.+.++.|.||+.+|++++| +||+.+|+|++.||++++||. +|+++...+.|
T Consensus 6 ~~e~~~L~GH~~~V~~~a~---------------------------spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh- 56 (577)
T 2ymu_A 6 VKERNRLEAHSSSVRGVAF---------------------------SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH- 56 (577)
T ss_dssp CCEEEEECCCSSCEEEEEE---------------------------CTTSSCEEEEETTSEEEEECT-TSCEEEEEECC-
T ss_pred CEEEEEECCCCCCEEEEEE---------------------------CCCCCEEEEEECCCEEEEEEC-CCCEEEEEECC-
T ss_conf 3894398789985799999---------------------------899899999938998999979-99789999689-
Q ss_pred CCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCC
Q ss_conf 87899601220799983499995135776655665442235543334557889999731899907873299999704544
Q 000673 133 WVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLS 212 (1358)
Q Consensus 133 ~~~~~s~i~~~~~~~~~~~l~c~~~~~~~~~~~~~~~~~~g~~~s~d~~~~~~~~~~~~I~i~D~~tl~v~~~l~s~~~~ 212 (1358)
... |..+..+++...+...+ .+++|.+||. +.+.+..+.. +
T Consensus 57 --~~~--V~~l~fspdg~~las~~-------------------------------~d~~i~vWd~-~~~~~~~~~~---~ 97 (577)
T 2ymu_A 57 --SSS--VWGVAFSPDGQTIASAS-------------------------------DDKTVKLWNR-NGQLLQTLTG---H 97 (577)
T ss_dssp --SSC--EEEEEECTTSSEEEEEE-------------------------------TTSCEEEEET-TSCEEEEECC---C
T ss_pred --CCC--EEEEEECCCCCEEEEEE-------------------------------CCCEEEEEEC-CCCEEEEEEC---C
T ss_conf --899--89999989999999996-------------------------------9897999989-9978999978---9
Q ss_pred CCCCCEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCC-------------------------CCEECCCC
Q ss_conf 68740689960277877312899965883799962568655534687-------------------------41002776
Q 000673 213 IGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGN-------------------------GLCKSSSQ 267 (1358)
Q Consensus 213 ~~pis~l~v~~~~~d~~~~~~lvs~s~dg~vkvW~l~~~~~~~~~~~-------------------------~l~e~~~~ 267 (1358)
.+++.+++|.. | +..+++++.|+.+++|+..........+. .+... .
T Consensus 98 ~~~v~~~~~s~---d---~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 169 (577)
T 2ymu_A 98 SSSVRGVAFSP---D---GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR--N 169 (577)
T ss_dssp SSCEEEEEECT---T---SSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT--T
T ss_pred CCCEEEEEECC---C---CCEEEEECCCCCEEECCCCCCEEEECCCCCCCEEEEEEECCCCCCEECCCCCCEECCCC--C
T ss_conf 99889999989---9---99899980798335202355200110477774355542037763200255531000000--0
Q ss_pred CCCEEECCCCCCCCEEEEEECCCCEEEEEECCCE--EEEECCCCCCCCEEEEEECCEEEECCCCCCCEEEEEEECCCCHH
Q ss_conf 5523731685458208999028968999834806--99514887410015432042254258888736998961031000
Q 000673 268 LDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC--IFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAE 345 (1358)
Q Consensus 268 ~~~i~~~~~~~~~v~~vs~s~dg~~i~~~~~~~~--i~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~fl~~~d~~ 345 (1358)
.........+...+..+.++++++.++.++.++. +|+. ++..+..+ ..+ ...+....|.+++.
T Consensus 170 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~--~~~~~~~~---------~~~--~~~v~~~~~s~dg~-- 234 (577)
T 2ymu_A 170 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR--NGQLLQTL---------TGH--SSSVRGVAFSPDGQ-- 234 (577)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT--TSCEEEEE---------ECC--SSCEEEEEECTTSS--
T ss_pred EEEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEEEC--CCCEEEEE---------ECC--CCCEEEEEECCCCC--
T ss_conf 0000002687763566541699778999859998999949--99689999---------468--89889999979999--
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCC
Q ss_conf 01134553355321799991699689999805775566788523487558899702475730221589964100354565
Q 000673 346 KIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEET 425 (1358)
Q Consensus 346 ~~~~~~~~~~~~~~~i~vw~~~g~~~l~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~i~f~~~~~~L~~v~s~~~~~~~~ 425 (1358)
.++..+.++.+.+|+... ..+.....+...+..+.|.+++..+++.. .++.
T Consensus 235 --------------~l~~~~~d~~i~~w~~~~----------~~~~~~~~~~~~v~~v~~~~d~~~l~~~~-----~d~~ 285 (577)
T 2ymu_A 235 --------------TIASASDDKTVKLWNRNG----------QLLQTLTGHSSSVNGVAFRPDGQTIASAS-----DDKT 285 (577)
T ss_dssp --------------CEEEEETTSCEEEECTTS----------CEEEEECCCSSCEEEEEECTTSSEEEEEE-----TTSC
T ss_pred --------------EEEEEECCCEEEEEECCC----------CEEEEEECCCCCEEEEEECCCCCEEEEEE-----CCCE
T ss_conf --------------999991899899995999----------79999806889879999968999999995-----9997
Q ss_pred CCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 55667089995677889999511498405763023206643467889533421034258951122245788789841212
Q 000673 426 SQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDF 505 (1358)
Q Consensus 426 ~~~~p~v~iws~~~~~~~~~~~~~~l~~g~~~g~w~~~~~~~~~~~g~~i~~l~~t~~~~~i~~w~~~~~~~~~~~~~~~ 505 (1358)
+++|...++ ..+.+ .+.....+.+ ...+++. .++....++.+++|+... .....+
T Consensus 286 ------i~~w~~~~~------~~~~~-~~h~~~v~~~----~~~~~~~---~l~t~~~d~~i~~w~~~~-----~~~~~~ 340 (577)
T 2ymu_A 286 ------VKLWNRNGQ------LLQTL-TGHSSSVWGV----AFSPDGQ---TIASASDDKTVKLWNRNG-----QHLQTL 340 (577)
T ss_dssp ------EEEEETTSC------EEEEE-CCCSSCEEEE----EECTTSS---EEEEEETTSCEEEEETTS-----CEEEEE
T ss_pred ------EEEEECCCC------EEEEE-ECCCCCEEEE----EECCCCC---EEEEEECCCEEEEEECCC-----CEEEEE
T ss_conf ------999948995------89997-0688976999----9999999---999996999599996999-----725787
Q ss_pred CCCCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCC
Q ss_conf 34897199978530675248879999838939999904766689998843458750889993488778999981045688
Q 000673 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1358)
Q Consensus 506 ~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~s~~~~~~l~gH~~~V~~L~~sp~~~~p 585 (1358)
.+|...++++.+.++..+ +++|+.||.+++|.. +++....+.+|...|++++|+ |
T Consensus 341 ~~~~~~v~~~~~s~~g~~----l~~~~~dg~v~~~~~----------------~~~~~~~~~~~~~~v~~~~~s-----~ 395 (577)
T 2ymu_A 341 TGHSSSVWGVAFSPDGQT----IASASDDKTVKLWNR----------------NGQLLQTLTGHSSSVRGVAFS-----P 395 (577)
T ss_dssp CCCSSCEEEEEECTTSSE----EEEEETTSEEEEEET----------------TCCEEEEEECCSSCEEEEEEC-----T
T ss_pred ECCCCCEEEEEECCCCCE----EEEEECCCEEEEECC----------------CCCEEEEECCCCCCEEEEEEC-----C
T ss_conf 478897799999899999----999969998999908----------------997899852788974899998-----9
Q ss_pred CCCCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEE
Q ss_conf 78766859999969992999948997179998027986899996999999999995999968992999988998289995
Q 000673 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF 665 (1358)
Q Consensus 586 dg~~~~~~LvSgs~D~tI~iWDl~tg~~l~~l~~h~~~V~~l~~sPd~~~~~~g~~l~S~s~D~sV~lwdl~~~~~i~~l 665 (1358)
|| ++|++++.|++|++||. +++.+..+.+|...|+++.|+|+ ++.+++++.|++|++||. +++.+..+
T Consensus 396 dg----~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d------~~~l~~~~~d~~v~~w~~-~~~~~~~~ 463 (577)
T 2ymu_A 396 DG----QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD------DQTIASASDDKTVKLWNR-NGQLLQTL 463 (577)
T ss_dssp TS----SCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTT------SSEEEEEETTSEEEEEET-TSCEEEEE
T ss_pred CC----CEEEEEECCCEEEEEEC-CCCEEEEECCCCCCEEEEEECCC------CCEEEEECCCCEEEEEEC-CCCEEEEE
T ss_conf 99----99999949998999969-99789896288997579999899------999999939998999979-99889997
Q ss_pred CCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCCEEECCEECCCC
Q ss_conf 28999938999959999999973588632499985999979999099999388975578766326543100042231861
Q 000673 666 PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNT 745 (1358)
Q Consensus 666 ~~H~~~V~~i~~~pd~~~Li~g~~d~sgssD~DgtI~IWdl~tg~~~~~l~GH~~~v~~~~~~~~~~~~~isgs~~~g~~ 745 (1358)
.+|...+.+++|+|++++|++++.| ++|++||. ++++++.+.+|...+..+.|++. |.+
T Consensus 464 ~~~~~~v~~~~~spd~~~las~~~d--------~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~d------------g~~ 522 (577)
T 2ymu_A 464 TGHSSSVRGVAFSPDGQTIASASDD--------KTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPD------------GQT 522 (577)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEETT--------SEEEEEET-TSCEEEEEECCSSCEEEEEECTT------------SSC
T ss_pred CCCCCCEEEEEECCCCCEEEEEECC--------CEEEEECC-CCCEEEEEECCCCCEEEEEECCC------------CCE
T ss_conf 2789977899996999999999198--------97999939-99789998679999899999189------------999
Q ss_pred CCCCCCCCCCCCCCEEEEEC
Q ss_conf 13688523236993999948
Q 000673 746 SVSSLLLPIHEDGTFRQSQI 765 (1358)
Q Consensus 746 ~~s~~l~~~~~D~tir~W~~ 765 (1358)
++++ ..|+++|+|+.
T Consensus 523 l~s~-----~~dg~v~lwd~ 537 (577)
T 2ymu_A 523 IASA-----SDDKTVKLWNR 537 (577)
T ss_dssp EEEE-----ETTSEEEEECT
T ss_pred EEEE-----ECCCEEEEEEC
T ss_conf 9999-----89699999969
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=344.94 Aligned_cols=556 Identities=11% Similarity=0.035 Sum_probs=375.2
Q ss_pred EEEEEECCCC--CCCEEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCEEEEEECCCCC-EEEEEECCCCCCCCCC
Q ss_conf 4899908999--982168999816999799990788599998667899853204863076757-7994531454213674
Q 000673 5 SVACIWSGTP--PSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAP-IADLSICYPAMVSRDG 81 (1358)
Q Consensus 5 ~~~~lw~~~~--p~h~Vtaia~Spdg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~-Vt~l~~~~~~~~~~~~ 81 (1358)
...-.|.+.| ....|++++++||+++|++++ |+.|++|++.+. ....++...+.+|..+ |++++|
T Consensus 5 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~-~~~~~~~~~~~~h~~~~v~~~~~---------- 72 (615)
T 1pgu_A 5 SLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDG-DSKVPPVVQFTGHGSSVVTTVKF---------- 72 (615)
T ss_dssp EEEEEECCCCCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSS-CCSSCSEEEECTTTTSCEEEEEE----------
T ss_pred CHHHCCCCCCCCCCCCEEEEEECCCCCEEEEEC-CCEEEEEECCCC-CCCCCCCEEEECCCCCEEEEEEE----------
T ss_conf 352315999877658536899889999799935-984999977788-77651431880578844999997----------
Q ss_pred CCCCCCCCCCCCCCCCCCC--CCCEEEEEECCCEEEEEECCCC--------CEEEEEECCCCCCCCCEEEEECCCCCCEE
Q ss_conf 3210000146863455569--9996999518991999988999--------36999627998789960122079998349
Q 000673 82 KAEHWKAENSSNVMGKSSL--DNGALISACTDGVLCVWSRSSG--------HCRRRRKLPPWVGSPSVICTLPSNPRYVC 151 (1358)
Q Consensus 82 ~~~~~~~~~~~~~~~~~s~--d~~~LvS~s~Dg~l~iWdl~~G--------~c~~~~~~~~~~~~~s~i~~~~~~~~~~~ 151 (1358)
++ ++.+|++++.||.+++||+.+| ++......+ .. .+..+..+++...
T Consensus 73 -----------------sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~---~~--~v~~~~~s~~~~~ 130 (615)
T 1pgu_A 73 -----------------SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVL---AG--PISDISWDFEGRR 130 (615)
T ss_dssp -----------------CSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECC---SS--CEEEEEECTTSSE
T ss_pred -----------------CCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCHHHCC---CC--CEEEEEEECCCCE
T ss_conf -----------------9678998899964898799976888765544554200011125---66--3799999079998
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 99951357766556654422355433345578899997318999078732999997045446874068996027787731
Q 000673 152 IGCCFIDTNQLSDHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKH 231 (1358)
Q Consensus 152 l~c~~~~~~~~~~~~~~~~~~g~~~s~d~~~~~~~~~~~~I~i~D~~tl~v~~~l~s~~~~~~pis~l~v~~~~~d~~~~ 231 (1358)
+.+.+.+. ...+.|.+|| +.+.+..+.. +..++.+++|... + .
T Consensus 131 l~~~~~~~---------------------------~~~~~v~~~d--~~~~~~~~~~---~~~~v~~~~~~~~---~--~ 173 (615)
T 1pgu_A 131 LCVVGEGR---------------------------DNFGVFISWD--SGNSLGEVSG---HSQRINACHLKQS---R--P 173 (615)
T ss_dssp EEEEECCS---------------------------SCSEEEEETT--TCCEEEECCS---CSSCEEEEEECSS---S--S
T ss_pred EEEECCCC---------------------------CCCCEEEEEE--CCCCCEEEEC---CCCCEEEEEECCC---C--C
T ss_conf 99931687---------------------------7755799997--8981031306---7743889998878---9--9
Q ss_pred EEEEEECCCCEEEEECCCCCCCCCCCCCCCEECCCCCCCEEECCCCCC---CCEEEEEECC-CCEEEEEECCCE--EEEE
Q ss_conf 289996588379996256865553468741002776552373168545---8208999028-968999834806--9951
Q 000673 232 YGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVE---GGHLVSVATC-GNIIALVLKDHC--IFRL 305 (1358)
Q Consensus 232 ~~lvs~s~dg~vkvW~l~~~~~~~~~~~~l~e~~~~~~~i~~~~~~~~---~v~~vs~s~d-g~~i~~~~~~~~--i~d~ 305 (1358)
..+++++.|+.+++|++.... .+.....|.. .+.++.|+++ ++.++.+..++. +|++
T Consensus 174 ~~l~~~~~d~~v~vwd~~~~~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 236 (615)
T 1pgu_A 174 MRSMTVGDDGSVVFYQGPPFK-----------------FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 236 (615)
T ss_dssp CEEEEEETTTEEEEEETTTBE-----------------EEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEET
T ss_pred CEEEEEECCCCEEEEECCCCC-----------------EEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCEEEEEEC
T ss_conf 689999579959999699961-----------------013202567777428999978977888999868980899989
Q ss_pred CCCCCCCCEEEEEECCEEEEC-CCCCCCEEEEEEECCCCHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCC
Q ss_conf 488741001543204225425-8888736998961031000011345533553217999916996899998057755667
Q 000673 306 LGSGSTIGEICFVDNLFCLEG-GSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDY 384 (1358)
Q Consensus 306 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~g~~fl~~~d~~~~~~~~~~~~~~~~~i~vw~~~g~~~l~~l~~~~~~~~~ 384 (1358)
..+..+..+ ... ......+....|. .+. .+++.+.+|.+.+|++.........
T Consensus 237 -~~~~~~~~~--------~~~~~~~~~~v~~~~~~-~~~----------------~l~~~~~d~~i~~wd~~~~~~~~~~ 290 (615)
T 1pgu_A 237 -KSGEFLKYI--------EDDQEPVQGGIFALSWL-DSQ----------------KFATVGADATIRVWDVTTSKCVQKW 290 (615)
T ss_dssp -TTCCEEEEC--------CBTTBCCCSCEEEEEES-SSS----------------EEEEEETTSEEEEEETTTTEEEEEE
T ss_pred -CCCCEEEEE--------CCCCCCCCCCEEEEEEC-CCC----------------EEEEECCCCCEEEEECCCCCEEEEE
T ss_conf -999785895--------25444567755899981-899----------------7999848994899978889278788
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEECC
Q ss_conf 88523487558899702475730221589964100354565556670899956778899995114984057630232066
Q 000673 385 EPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNS 464 (1358)
Q Consensus 385 ~~~~~i~~~~~~~~~~~~i~f~~~~~~L~~v~s~~~~~~~~~~~~p~v~iws~~~~~~~~~~~~~~l~~g~~~g~w~~~~ 464 (1358)
.... .........+.|. .+.+++... .++. +++|++... .....+ .+.......+
T Consensus 291 ~~~~-----~~~~~~~~~~~~~-~~~~l~~~~-----~~g~------i~~~d~~~~-----~~~~~~-~~~~~~v~~~-- 345 (615)
T 1pgu_A 291 TLDK-----QQLGNQQVGVVAT-GNGRIISLS-----LDGT------LNFYELGHD-----EVLKTI-SGHNKGITAL-- 345 (615)
T ss_dssp ECCT-----TCGGGCEEEEEEE-ETTEEEEEE-----TTSC------EEEEETTEE-----EEEEEE-CCCSSCEEEE--
T ss_pred CCCC-----CCCCCCEEEEEEC-CCCEEEEEE-----CCCC------EEEEECCCC-----CEEEEE-ECCCCCEEEE--
T ss_conf 4787-----7545714699918-997699997-----8997------899988899-----288999-4777878999--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEEECC
Q ss_conf 43467889533421034258951122245788789841212348971999785306752488799998389399999047
Q 000673 465 TFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDL 544 (1358)
Q Consensus 465 ~~~~~~~g~~i~~l~~t~~~~~i~~w~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~ 544 (1358)
.. ++ +.....++.+++|+.. ... .+|...|+++.+ +...+ +++++.||.+++|....
T Consensus 346 --~~-~~------l~~~~~dg~i~~w~~~--------~~~-~~~~~~v~~~~~-~~~~~----l~~~~~d~~i~~~~~~~ 402 (615)
T 1pgu_A 346 --TV-NP------LISGSYDGRIMEWSSS--------SMH-QDHSNLIVSLDN-SKAQE----YSSISWDDTLKVNGITK 402 (615)
T ss_dssp --ET-TT------TEEEETTSCEEETTTT--------EEE-CCCCSCEEEEEC-CSTTC----CEEEETTTEEEETTEEE
T ss_pred --EE-CC------CEEECCCCEEEEEECH--------HHC-CCCCCCEEEEEE-CCCCE----EEEEECCCCEEEEECCC
T ss_conf --95-67------4898799959998752--------415-755685179997-89867----99995899799988666
Q ss_pred CCC-------------------CCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEEC-CCCEE
Q ss_conf 666-------------------8999884345875088999348877899998104568878766859999969-99299
Q 000673 545 FER-------------------HNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM-DCSIR 604 (1358)
Q Consensus 545 ~~~-------------------~~~~~~~~d~~s~~~~~~l~gH~~~V~~L~~sp~~~~pdg~~~~~~LvSgs~-D~tI~ 604 (1358)
... .......|+..+++....+. |...+++++|+ + +++++++. |+.|+
T Consensus 403 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~----~~l~~~~~~d~~i~ 470 (615)
T 1pgu_A 403 HEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS-------Q----NYVAVGLEEGNTIQ 470 (615)
T ss_dssp EECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC-------S----SEEEEEETTTSCEE
T ss_pred CCCCCCCEEEEECCCCCEEEEECCCCEEEEECCCCCEEEECC-CCCCCEEEEEC-------C----CEEEEEECCCCEEE
T ss_conf 763678469998289878999679826999446786655515-67872077883-------8----88999656898699
Q ss_pred EEECCCCCEE-EEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEECC-CCCCCEEEEECC---
Q ss_conf 9948997179-99802798689999699999999999599996899299998899828999528-999938999959---
Q 000673 605 IWDLGSGNLI-TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG-HPNYPAKVVWDC--- 679 (1358)
Q Consensus 605 iWDl~tg~~l-~~l~~h~~~V~~l~~sPd~~~~~~g~~l~S~s~D~sV~lwdl~~~~~i~~l~~-H~~~V~~i~~~p--- 679 (1358)
+||+..++.. ..+..|...|+++.|+|+ +.++++++.|+.|++||+++++++..+.+ |...|++++|+|
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 544 (615)
T 1pgu_A 471 VFKLSDLEVSFDLKTPLRAKPSYISISPS------ETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEK 544 (615)
T ss_dssp EEETTEEEEEEECSSCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC-
T ss_pred EEECCCCCCCCCCCCCCCCCEEEEEECCC------CCEEEECCCCCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCC
T ss_conf 99888854353336776575079999899------998998179985998657777624676047887146999768323
Q ss_pred -------CCCEEEEEECCCCCCCCCCCEEEEEECCCC-EEEEEEECCCCCEEEEEEECCCCCCEEECCEECCCCCCCCCC
Q ss_conf -------999999973588632499985999979999-099999388975578766326543100042231861136885
Q 000673 680 -------PRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLL 751 (1358)
Q Consensus 680 -------d~~~Li~g~~d~sgssD~DgtI~IWdl~tg-~~~~~l~GH~~~v~~~~~~~~~~~~~isgs~~~g~~~~s~~l 751 (1358)
++.+|++++.| +.|++||++++ +++..+.+|...+..+.|++... .+++
T Consensus 545 ~~~~~~~~~~~l~~~~~d--------g~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~--l~s~------------- 601 (615)
T 1pgu_A 545 GANEEEIEEDLVATGSLD--------TNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST--LVSS------------- 601 (615)
T ss_dssp -----CCSCCEEEEEETT--------SCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE--EEEE-------------
T ss_pred CCCCCCCCCCEEEEECCC--------CCEEEEECCCCCEECHHHHCCCCCEEEEEECCCCC--EEEE-------------
T ss_conf 453324688889998179--------71999977888540311335943058999738997--2884-------------
Q ss_pred CCCCCCCCEEEEECC
Q ss_conf 232369939999488
Q 000673 752 LPIHEDGTFRQSQIQ 766 (1358)
Q Consensus 752 ~~~~~D~tir~W~~~ 766 (1358)
..|+++++|++.
T Consensus 602 ---~~d~~v~iw~~~ 613 (615)
T 1pgu_A 602 ---GADACIKRWNVV 613 (615)
T ss_dssp ---ETTSCEEEEEEC
T ss_pred ---CCCCEEEEEEEE
T ss_conf ---599639999601
No 7
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=338.22 Aligned_cols=532 Identities=11% Similarity=0.054 Sum_probs=350.2
Q ss_pred EEEEECCC---------CCCCEEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCC-
Q ss_conf 89990899---------99821689998169997999907885999986678998532048630767577994531454-
Q 000673 6 VACIWSGT---------PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPA- 75 (1358)
Q Consensus 6 ~~~lw~~~---------~p~h~Vtaia~Spdg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~~~- 75 (1358)
.+.||... .+.+.|++++|+|||++||||+.||+|++||+.+ ........+.+|..+|.+++|.++.
T Consensus 40 ~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~---~~~~~~~~~~~~~~~v~~v~fs~dg~ 116 (611)
T 1nr0_A 40 SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQ---TTHILKTTIPVFSGPVKDISWDSESK 116 (611)
T ss_dssp EEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSS---TTCCEEEEEECSSSCEEEEEECTTSC
T ss_pred EEEEECCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC---CCCEEEEEECCCCCCEEEEEECCCCC
T ss_conf 799945787242737658998659999999996899994899789948989---84156676225578448999899999
Q ss_pred --CCCC-----CCCCCCCCCC--------CCCCCCCCC-CCCCC-EEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCC
Q ss_conf --2136-----7432100001--------468634555-69999-69995189919999889993699962799878996
Q 000673 76 --MVSR-----DGKAEHWKAE--------NSSNVMGKS-SLDNG-ALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPS 138 (1358)
Q Consensus 76 --~~~~-----~~~~~~~~~~--------~~~~~~~~~-s~d~~-~LvS~s~Dg~l~iWdl~~G~c~~~~~~~~~~~~~s 138 (1358)
...+ .|.+..|+.+ +...+..+. +|++. .|+|++.|+++++||...+++......| ..
T Consensus 117 ~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H---~~-- 191 (611)
T 1nr0_A 117 RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEH---TK-- 191 (611)
T ss_dssp EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCC---SS--
T ss_pred EEEEEECCCCCEEEEEEEECCCCCCEECCCCCCCEEEEECCCCCEEEEEEECCCEEEEEECCCCEEEEEECCC---CC--
T ss_conf 7999989977366999963899763254788983699988999829999928980999979997576652002---57--
Q ss_pred EEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECC----CCCC
Q ss_conf 012207999834999951357766556654422355433345578899997318999078732999997045----4468
Q 000673 139 VICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGN----LSIG 214 (1358)
Q Consensus 139 ~i~~~~~~~~~~~l~c~~~~~~~~~~~~~~~~~~g~~~s~d~~~~~~~~~~~~I~i~D~~tl~v~~~l~s~~----~~~~ 214 (1358)
.|..+..+++...+...+ .+++|.+||..+.+.+..+.... -|.+
T Consensus 192 ~V~~v~fspdg~~las~s-------------------------------~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~ 240 (611)
T 1nr0_A 192 FVHSVRYNPDGSLFASTG-------------------------------GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG 240 (611)
T ss_dssp CEEEEEECTTSSEEEEEE-------------------------------TTSCEEEEETTTCCEEEECBCTTSSSCSSSS
T ss_pred CEEEEEECCCCCEEEEEE-------------------------------CCCCEEEEECCCCCEEEEECCCCCCCCCCCC
T ss_conf 169999979999899998-------------------------------9991999889998286651366432356678
Q ss_pred CCCEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCEECCCCCCCEEECCCCCCCCEEEEEECCCCEEE
Q ss_conf 74068996027787731289996588379996256865553468741002776552373168545820899902896899
Q 000673 215 PWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIA 294 (1358)
Q Consensus 215 pis~l~v~~~~~d~~~~~~lvs~s~dg~vkvW~l~~~~~~~~~~~~l~e~~~~~~~i~~~~~~~~~v~~vs~s~dg~~i~ 294 (1358)
++.+++|.+ | +..|++++.|+.+++|++..... ...+.....+......+. .+++.++
T Consensus 241 ~V~~v~~sp---d---g~~l~s~s~D~~v~lWd~~~~~~--------------~~~~~~~~~~~~~~~~~~--~~~~~l~ 298 (611)
T 1nr0_A 241 SVFGLTWSP---D---GTKIASASADKTIKIWNVATLKV--------------EKTIPVGTRIEDQQLGII--WTKQALV 298 (611)
T ss_dssp CEEEEEECT---T---SSEEEEEETTSEEEEEETTTTEE--------------EEEEECCSSGGGCEEEEE--ECSSCEE
T ss_pred CEEEEEECC---C---CCEEEEEECCCEEEEEECCCCCE--------------EEEECCCCCCCCEEEEEE--ECCCEEE
T ss_conf 789999979---9---99999990898099996888701--------------344047887664068999--7388799
Q ss_pred EEECCCE--EEEECCCCCCCCEEEEEECCEEEECCCCCCCEEEEEEECCCCHHCCCCCCCCCCCCCEEEEEEECCCCEEE
Q ss_conf 9834806--99514887410015432042254258888736998961031000011345533553217999916996899
Q 000673 295 LVLKDHC--IFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIV 372 (1358)
Q Consensus 295 ~~~~~~~--i~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~fl~~~d~~~~~~~~~~~~~~~~~i~vw~~~g~~~l 372 (1358)
.++.++. +|+. +.+..... ..++ ...+....|.+++. .++..+.++.+.+
T Consensus 299 s~s~d~~i~~~~~-~~~~~~~~---------~~gh--~~~v~~l~~spdg~----------------~l~s~s~D~~v~~ 350 (611)
T 1nr0_A 299 SISANGFINFVNP-ELGSIDQV---------RYGH--NKAITALSSSADGK----------------TLFSADAEGHINS 350 (611)
T ss_dssp EEETTCCEEEEET-TTTEEEEE---------ECCC--SSCEEEEEECTTSS----------------EEEEEETTSCEEE
T ss_pred EEECCCCEEEEEC-CCCCCCEE---------ECCC--CCCEEEEEEECCCC----------------EEEEEECCCCEEE
T ss_conf 9958996899968-89974469---------8378--88889999918999----------------8999958984999
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEE
Q ss_conf 99805775566788523487558899702475730221589964100354565556670899956778899995114984
Q 000673 373 YAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVG 452 (1358)
Q Consensus 373 ~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~i~f~~~~~~L~~v~s~~~~~~~~~~~~p~v~iws~~~~~~~~~~~~~~l~ 452 (1358)
|++....... .....+...+..+.|.+.+ .+++.. .++. +++|.................
T Consensus 351 Wd~~~~~~~~--------~~~~~h~~~v~~~~~s~~~-~l~s~s-----~d~~------v~~w~~~~~~~~~~~~~~~~~ 410 (611)
T 1nr0_A 351 WDISTGISNR--------VFPDVHATMITGIKTTSKG-DLFTVS-----WDDH------LKVVPAGGSGVDSSKAVANKL 410 (611)
T ss_dssp EETTTCCEEE--------CSSCSCSSCEEEEEECTTS-CEEEEE-----TTTE------EEEECSSSSSSCTTSCCEEEC
T ss_pred EECCCCCEEE--------ECCCCCCCEEEEEEECCCC-CEEEEE-----CCCC------EEEEECCCCCCCCCCEEEEEC
T ss_conf 9788792563--------2166776507899987899-699998-----4896------689546885435652120014
Q ss_pred ECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCEEEEEE
Q ss_conf 05763023206643467889533421034258951122245788789841212348971999785306752488799998
Q 000673 453 EGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGF 532 (1358)
Q Consensus 453 ~g~~~g~w~~~~~~~~~~~g~~i~~l~~t~~~~~i~~w~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~ 532 (1358)
.+... .....+++ ..........+.+|+.. . ...+ .|...++++.+.++..+ +++|+
T Consensus 411 ~~~~~-------~~~~s~dg----~~~~~~~~~~v~~~~~~------~-~~~~-~~~~~v~~va~spdg~~----lasgs 467 (611)
T 1nr0_A 411 SSQPL-------GLAVSADG----DIAVAACYKHIAIYSHG------K-LTEV-PISYNSSCVALSNDKQF----VAVGG 467 (611)
T ss_dssp SSCEE-------EEEECTTS----SCEEEEESSEEEEEETT------E-EEEE-ECSSCEEEEEECTTSCE----EEEEE
T ss_pred CCCCC-------EEEEECCC----CEEEEEECCEEEEEECC------C-EEEE-ECCCCCEEEEEECCCCE----EEEEC
T ss_conf 89970-------79980799----69999967639998489------4-3464-06889549999289989----99968
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCC-C
Q ss_conf 389399999047666899988434587508899934887789999810456887876685999996999299994899-7
Q 000673 533 FSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS-G 611 (1358)
Q Consensus 533 ~dG~I~i~~~~~~~~~~~~~~~~d~~s~~~~~~l~gH~~~V~~L~~sp~~~~pdg~~~~~~LvSgs~D~tI~iWDl~t-g 611 (1358)
.||.|++|.... ........ .+|.+.|++++|+ ||| ++|++++.|++|++||+.+ +
T Consensus 468 ~D~~v~lwd~~~-------------~~~~~~~~-~~h~~~v~~v~fs-----pdg----~~las~s~d~~v~~w~~~~~~ 524 (611)
T 1nr0_A 468 QDSKVHVYKLSG-------------ASVSEVKT-IVHPAEITSVAFS-----NNG----AFLVATDQSRKVIPYSVANNF 524 (611)
T ss_dssp TTSEEEEEEEET-------------TEEEEEEE-EECSSCEEEEEEC-----TTS----SEEEEEETTSCEEEEEGGGTT
T ss_pred CCCEEEEEECCC-------------CCEEEEEC-CCCCCCEEEEEEC-----CCC----CEEEEECCCCCEEEEECCCCC
T ss_conf 997399999459-------------92224101-5778860799998-----999----989999489989998857787
Q ss_pred CEEEE--EECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCC-EE-EEECCC-CCCCEEEEECCCCCEEEE
Q ss_conf 17999--80279868999969999999999959999689929999889982-89-995289-999389999599999999
Q 000673 612 NLITV--MHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR-VE-RMFPGH-PNYPAKVVWDCPRGYIAC 686 (1358)
Q Consensus 612 ~~l~~--l~~h~~~V~~l~~sPd~~~~~~g~~l~S~s~D~sV~lwdl~~~~-~i-~~l~~H-~~~V~~i~~~pd~~~Li~ 686 (1358)
+++.. +.+|.+.|+++.|+|+ ++++++++.|++|++|+++++. +. ..+.+| ...|.+++|+|++. |++
T Consensus 525 ~~~~~~~~~~H~~~V~~v~fspd------g~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s 597 (611)
T 1nr0_A 525 ELAHTNSWTFHTAKVACVSWSPD------NVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVS 597 (611)
T ss_dssp EESCCCCCCCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEE
T ss_pred CEEEEEEEEECCCCEEEEEECCC------CCEEEEEECCCCEEEEECCCCCCCCCHHHCCCCCCCEEEEEECCCCE-EEE
T ss_conf 22321026404664258998998------99799997997299997887555632644467656711899858997-999
Q ss_pred EECCCCCCCCCCCEEEEEECC
Q ss_conf 735886324999859999799
Q 000673 687 LCRDHSRTSDAVDVLFIWDVK 707 (1358)
Q Consensus 687 g~~d~sgssD~DgtI~IWdl~ 707 (1358)
++ . |++|++|++.
T Consensus 598 ~~------~--D~~i~lW~~~ 610 (611)
T 1nr0_A 598 AG------Q--DSNIKFWNVP 610 (611)
T ss_dssp EE------T--TSCEEEEECC
T ss_pred EC------C--CCCEEEEECC
T ss_conf 52------8--8778998444
No 8
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=318.73 Aligned_cols=500 Identities=12% Similarity=0.089 Sum_probs=326.5
Q ss_pred CCCE-EEEEEEEC--CCCEEEEEECCCCEEEEECCCCCCC-----CCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 9821-68999816--9997999907885999986678998-----53204863076757799453145421367432100
Q 000673 15 PSHR-VTATSALT--QPPTLYTGGSDGSILWWSFSDSSYS-----EIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHW 86 (1358)
Q Consensus 15 p~h~-Vtaia~Sp--dg~~LaTGs~DG~I~lWdl~~~~~~-----~~~~~~~L~GH~~~Vt~l~~~~~~~~~~~~~~~~~ 86 (1358)
+... |++++++| |+++|++|+.||.|++||+.+ +. .......+.+|..+|.+++|
T Consensus 62 h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~--------------- 124 (615)
T 1pgu_A 62 HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF--DKESNSVEVNVKSEFQVLAGPISDISW--------------- 124 (615)
T ss_dssp TTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE--EGGGTEEEEEEEEEEECCSSCEEEEEE---------------
T ss_pred CCCCEEEEEEECCCCCCCEEEEECCCCEEEEEECCC--CCCCCCCCCCCCCHHHCCCCCEEEEEE---------------
T ss_conf 788449999979678998899964898799976888--765544554200011125663799999---------------
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECC----CEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCCCCEEEEEEECCCCCC
Q ss_conf 0014686345556999969995189----919999889993699962799878996012207999834999951357766
Q 000673 87 KAENSSNVMGKSSLDNGALISACTD----GVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQL 162 (1358)
Q Consensus 87 ~~~~~~~~~~~~s~d~~~LvS~s~D----g~l~iWdl~~G~c~~~~~~~~~~~~~s~i~~~~~~~~~~~l~c~~~~~~~~ 162 (1358)
++++.+|++++.| +.+.+|| .++++.....| ........+.++.++ .+...+
T Consensus 125 ------------s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~---~~~v~~~~~~~~~~~-~l~~~~------ 180 (615)
T 1pgu_A 125 ------------DFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGH---SQRINACHLKQSRPM-RSMTVG------ 180 (615)
T ss_dssp ------------CTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSC---SSCEEEEEECSSSSC-EEEEEE------
T ss_pred ------------ECCCCEEEEECCCCCCCCEEEEEE--CCCCCEEEECC---CCCEEEEEECCCCCC-EEEEEE------
T ss_conf ------------079998999316877755799997--89810313067---743889998878996-899995------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCC---CCCEEEEEECCCCCCCCEEEEEECC
Q ss_conf 5566544223554333455788999973189990787329999970454468---7406899602778773128999658
Q 000673 163 SDHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIG---PWKFMDVVSLGEDMGKHYGLMVDSV 239 (1358)
Q Consensus 163 ~~~~~~~~~~g~~~s~d~~~~~~~~~~~~I~i~D~~tl~v~~~l~s~~~~~~---pis~l~v~~~~~d~~~~~~lvs~s~ 239 (1358)
.++.|.+||..+.+.+..+.. +.. ++.+++|... ++. .+++++.
T Consensus 181 -------------------------~d~~v~vwd~~~~~~~~~~~~---~~~~~~~v~~~~~~~~--~~~---~l~~~~~ 227 (615)
T 1pgu_A 181 -------------------------DDGSVVFYQGPPFKFSASDRT---HHKQGSFVRDVEFSPD--SGE---FVITVGS 227 (615)
T ss_dssp -------------------------TTTEEEEEETTTBEEEEEECS---SSCTTCCEEEEEECST--TCC---EEEEEET
T ss_pred -------------------------CCCCEEEEECCCCCEEEEECC---CCCCCCEEEEEEECCC--CCC---EEEEEEC
T ss_conf -------------------------799599996999610132025---6777742899997897--788---8999868
Q ss_pred CCEEEEECCCCCCCCCCCCCCCEECCCCCCCEEEC-C---CCCCCCEEEEEECCCCEEEEEECCCE--EEEECCCCCCCC
Q ss_conf 83799962568655534687410027765523731-6---85458208999028968999834806--995148874100
Q 000673 240 GRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQ-N---GVVEGGHLVSVATCGNIIALVLKDHC--IFRLLGSGSTIG 313 (1358)
Q Consensus 240 dg~vkvW~l~~~~~~~~~~~~l~e~~~~~~~i~~~-~---~~~~~v~~vs~s~dg~~i~~~~~~~~--i~d~~~~~~~~~ 313 (1358)
++.+++|++.... .+... . .|...+..+.|+ +++.++....++. +|+. ..+..+.
T Consensus 228 dg~i~vwd~~~~~-----------------~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~-~~~~~~~ 288 (615)
T 1pgu_A 228 DRKISCFDGKSGE-----------------FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDV-TTSKCVQ 288 (615)
T ss_dssp TCCEEEEETTTCC-----------------EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEET-TTTEEEE
T ss_pred CCEEEEEECCCCC-----------------EEEEECCCCCCCCCCEEEEEEC-CCCEEEEECCCCCEEEEEC-CCCCEEE
T ss_conf 9808999899997-----------------8589525444567755899981-8997999848994899978-8892787
Q ss_pred EEEEEECCEEEECCCCCCCEEEEEEECCCCHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 15432042254258888736998961031000011345533553217999916996899998057755667885234875
Q 000673 314 EICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAV 393 (1358)
Q Consensus 314 ~~~~~~~~l~~~~~~~~~~~~g~~fl~~~d~~~~~~~~~~~~~~~~~i~vw~~~g~~~l~~l~~~~~~~~~~~~~~i~~~ 393 (1358)
.+.. .............|. .+. .+++.+.+|.+.+|++....... ..
T Consensus 289 ~~~~-------~~~~~~~~~~~~~~~-~~~----------------~l~~~~~~g~i~~~d~~~~~~~~---------~~ 335 (615)
T 1pgu_A 289 KWTL-------DKQQLGNQQVGVVAT-GNG----------------RIISLSLDGTLNFYELGHDEVLK---------TI 335 (615)
T ss_dssp EEEC-------CTTCGGGCEEEEEEE-ETT----------------EEEEEETTSCEEEEETTEEEEEE---------EE
T ss_pred EECC-------CCCCCCCCEEEEEEC-CCC----------------EEEEEECCCCEEEEECCCCCEEE---------EE
T ss_conf 8847-------877545714699918-997----------------69999789978999888992889---------99
Q ss_pred CCCCCCCEEEEEEECCCEEEEEEEECCCCCCCCCCCCEEEEEECCCC-CCCCCCC-------EEEEEECCCCCE---EEE
Q ss_conf 58899702475730221589964100354565556670899956778-8999951-------149840576302---320
Q 000673 394 SYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQK-HSGPGKQ-------CRMVGEGFSFVD---WVN 462 (1358)
Q Consensus 394 ~~~~~~~~~i~f~~~~~~L~~v~s~~~~~~~~~~~~p~v~iws~~~~-~~~~~~~-------~~~l~~g~~~g~---w~~ 462 (1358)
..+...+..+.| +. +++.. .++. +++|.+... ....... ...+..+..++. |..
T Consensus 336 ~~~~~~v~~~~~-~~---l~~~~-----~dg~------i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~ 400 (615)
T 1pgu_A 336 SGHNKGITALTV-NP---LISGS-----YDGR------IMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGI 400 (615)
T ss_dssp CCCSSCEEEEET-TT---TEEEE-----TTSC------EEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTE
T ss_pred ECCCCCEEEEEE-CC---CEEEC-----CCCE------EEEEECHHHCCCCCCCEEEEEECCCCEEEEEECCCCEEEEEC
T ss_conf 477787899995-67---48987-----9995------999875241575568517999789867999958997999886
Q ss_pred CC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCEEEEEEC-
Q ss_conf 66--------434678895334210342589511222457887898412123489719997853067524887999983-
Q 000673 463 NS--------TFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFF- 533 (1358)
Q Consensus 463 ~~--------~~~~~~~g~~i~~l~~t~~~~~i~~w~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~- 533 (1358)
.. .....+++ .+........+.+|+..+. +....+ .+...++++.+. .. .+++|+.
T Consensus 401 ~~~~~~~~~~~~~~s~~~----~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~--~~----~l~~~~~~ 465 (615)
T 1pgu_A 401 TKHEFGSQPKVASANNDG----FTAVLTNDDDLLILQSFTG----DIIKSV-RLNSPGSAVSLS--QN----YVAVGLEE 465 (615)
T ss_dssp EEEECSSCEEEEEECSSS----EEEEEETTSEEEEEETTTC----CEEEEE-ECSSCEEEEEEC--SS----EEEEEETT
T ss_pred CCCCCCCCCEEEEECCCC----CEEEEECCCCEEEEECCCC----CEEEEC-CCCCCCEEEEEC--CC----EEEEEECC
T ss_conf 667636784699982898----7899967982699944678----665551-567872077883--88----89996568
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCEEE-EEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCC
Q ss_conf 893999990476668999884345875088-9993488778999981045688787668599999699929999489971
Q 000673 534 SGEIEVIQFDLFERHNSPGASLKVNSHVSR-QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN 612 (1358)
Q Consensus 534 dG~I~i~~~~~~~~~~~~~~~~d~~s~~~~-~~l~gH~~~V~~L~~sp~~~~pdg~~~~~~LvSgs~D~tI~iWDl~tg~ 612 (1358)
||.|++|.. .+++.. ..+.+|...|++++|+ |++ ++|++|+.|+.|++||+.+++
T Consensus 466 d~~i~~~~~---------------~~~~~~~~~~~~~~~~v~~~~~s-----~~g----~~l~~~~~dg~i~iw~~~~~~ 521 (615)
T 1pgu_A 466 GNTIQVFKL---------------SDLEVSFDLKTPLRAKPSYISIS-----PSE----TYIAAGDVMGKILLYDLQSRE 521 (615)
T ss_dssp TSCEEEEET---------------TEEEEEEECSSCCSSCEEEEEEC-----TTS----SEEEEEETTSCEEEEETTTTE
T ss_pred CCEEEEEEC---------------CCCCCCCCCCCCCCCCEEEEEEC-----CCC----CEEEECCCCCEEEEEECCCCC
T ss_conf 986999988---------------88543533367765750799998-----999----989981799859986577776
Q ss_pred EEEEEEC-CCCCEEEEEECC----------CCCCCCCCCEEEEEECCCCEEEEECCCC-CEEEEECCCCCCCEEEEECCC
Q ss_conf 7999802-798689999699----------9999999995999968992999988998-289995289999389999599
Q 000673 613 LITVMHH-HVAPVRQIILSP----------PQTEHPWSDCFLSVGEDFSVALASLETL-RVERMFPGHPNYPAKVVWDCP 680 (1358)
Q Consensus 613 ~l~~l~~-h~~~V~~l~~sP----------d~~~~~~g~~l~S~s~D~sV~lwdl~~~-~~i~~l~~H~~~V~~i~~~pd 680 (1358)
++..+.+ |...|+++.|+| + +.++++++.|+.|++||++++ +++..+.+|...|++++|+|+
T Consensus 522 ~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~------~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~ 595 (615)
T 1pgu_A 522 VKTSRWAFRTSKINAISWKPAEKGANEEEIE------EDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP 595 (615)
T ss_dssp EEECCSCCCSSCEEEEEECCCC------CCS------CCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEET
T ss_pred CEEEEECCCCCCEEEEEECCCCCCCCCCCCC------CCEEEEECCCCCEEEEECCCCCEECHHHHCCCCCEEEEEECCC
T ss_conf 2467604788714699976832345332468------8889998179719999778885403113359430589997389
Q ss_pred CCEEEEEECCCCCCCCCCCEEEEEECCCC
Q ss_conf 99999973588632499985999979999
Q 000673 681 RGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1358)
Q Consensus 681 ~~~Li~g~~d~sgssD~DgtI~IWdl~tg 709 (1358)
+. |++++. |+.|++|+++++
T Consensus 596 ~~-l~s~~~--------d~~v~iw~~~~~ 615 (615)
T 1pgu_A 596 ST-LVSSGA--------DACIKRWNVVLE 615 (615)
T ss_dssp TE-EEEEET--------TSCEEEEEEC--
T ss_pred CC-EEEECC--------CCEEEEEEEECC
T ss_conf 97-288459--------963999960159
No 9
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=317.84 Aligned_cols=542 Identities=9% Similarity=-0.026 Sum_probs=287.8
Q ss_pred CCCEEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98216899981699979999078859999866789985320486307675779945314542136743210000146863
Q 000673 15 PSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNV 94 (1358)
Q Consensus 15 p~h~Vtaia~Spdg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (1358)
....|+|++|+||+++||+|+.||+|++|+... .+.. ....|..+|++++|
T Consensus 16 h~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~-----~~~~-~~~~~~~~V~~l~f----------------------- 66 (902)
T 2oaj_A 16 MSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQ-----VEVV-IKLEDRSAIKEMRF----------------------- 66 (902)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSEEEEECSTT-----CEEE-EECSSCCCEEEEEE-----------------------
T ss_pred CCCCCEEEEECCCCCEEEEEECCCEEEEEECCC-----CEEE-EECCCCCCEEEEEE-----------------------
T ss_conf 899848999979999899992979899996899-----4799-98689997799999-----------------------
Q ss_pred CCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 45556999969995189919999889993699962799878996012207999834999951357766556654422355
Q 000673 95 MGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGD 174 (1358)
Q Consensus 95 ~~~~s~d~~~LvS~s~Dg~l~iWdl~~G~c~~~~~~~~~~~~~s~i~~~~~~~~~~~l~c~~~~~~~~~~~~~~~~~~g~ 174 (1358)
++ +.+|+|++.|++|++||+.+++++.....+ + .+..+..+++...+++.+
T Consensus 67 ----sp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~---~---~V~~v~~sp~g~~l~sgs------------------ 117 (902)
T 2oaj_A 67 ----VK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVP---G---KITSIDTDASLDWMLIGL------------------ 117 (902)
T ss_dssp ----ET-TTEEEEEETTCEEEEEETTTCSEEEEEECS---S---CEEEEECCTTCSEEEEEE------------------
T ss_pred ----CC-CCEEEEEECCCEEEEEECCCCCEEEEECCC---C---CEEEEEECCCCCEEEEEC------------------
T ss_conf ----08-988999989595999989999689997489---9---879999879999899994------------------
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCEEE-EEE-------EECCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCEEEEE
Q ss_conf 43334557889999731899907873299-999-------7045446874068996027787731289996588379996
Q 000673 175 LVSEDKEVPMKNPPKCTLVIVDTYGLTIV-QTV-------FHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVP 246 (1358)
Q Consensus 175 ~~s~d~~~~~~~~~~~~I~i~D~~tl~v~-~~l-------~s~~~~~~pis~l~v~~~~~d~~~~~~lvs~s~dg~vkvW 246 (1358)
.++.|.+||..+.... +.+ ..-.-+.++|.+++|... + ...+++++.|+.+ +|
T Consensus 118 -------------~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~--~---~~~l~~g~~dg~v-lW 178 (902)
T 2oaj_A 118 -------------QNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR--D---IGTVLISYEYVTL-TY 178 (902)
T ss_dssp -------------TTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT--E---EEEEEEECSSCEE-EE
T ss_pred -------------CCCCEEEEECCCCCCCCCEECCCCCCCCCCCCCCCCEEEEEECCC--C---CCEEEEEECCCCE-EE
T ss_conf -------------999299999999962650304321000254457897389997669--9---9989999189849-99
Q ss_pred CCCCCCCCCCCCCCC--EECCCCCCCEEECCCCCCCCEEEEEECCCCEEEEEECCCE--EEEECCCCCCCCEEEEEECCE
Q ss_conf 256865553468741--0027765523731685458208999028968999834806--995148874100154320422
Q 000673 247 ISKESHLDREEGNGL--CKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC--IFRLLGSGSTIGEICFVDNLF 322 (1358)
Q Consensus 247 ~l~~~~~~~~~~~~l--~e~~~~~~~i~~~~~~~~~v~~vs~s~dg~~i~~~~~~~~--i~d~~~~~~~~~~~~~~~~~l 322 (1358)
++............. .... ..........|...+.+++|+|+|+.++.++.|+. +||. ..+..+....+ .
T Consensus 179 d~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~-~~g~~~~~r~l----~ 252 (902)
T 2oaj_A 179 SLVENEIKQSFIYELPPFAPG-GDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDA-NSGHMIMARTV----F 252 (902)
T ss_dssp ETTTTEEEEEECCCBCTTCCC-STTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEET-TTCCEEEEECS----S
T ss_pred ECCCCCEEEEEECCCCCCCCC-CCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCCEEEEEEE----C
T ss_conf 877896579983355776777-65443323456777689998599999999989993999987-89968888850----1
Q ss_pred EEECC-----------CCCCCEEEEEEECCCCHHCCCCCCCCCCCCCEEEEEEECC-----CCEEEEEECCCCCCCCCCC
Q ss_conf 54258-----------8887369989610310000113455335532179999169-----9689999805775566788
Q 000673 323 CLEGG-----------STNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNR-----GSAIVYAISYMNEKFDYEP 386 (1358)
Q Consensus 323 ~~~~~-----------~~~~~~~g~~fl~~~d~~~~~~~~~~~~~~~~~i~vw~~~-----g~~~l~~l~~~~~~~~~~~ 386 (1358)
-...+ .....+....|....+. . ....++..+.+ ..+.+|.+... ..+....
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~p---------d--~~~ll~sg~~~~~~~~~~v~~~~~~~~-~~~~~~s 320 (902)
T 2oaj_A 253 ETEINVPQPDYIRDSSTNAAKISKVYWMCENNP---------E--YTSLLISHKSISRGDNQSLTMIDLGYT-PRYSITS 320 (902)
T ss_dssp CSCTTSCCTTCCCCCSSCCCEEEEEEEEECSST---------T--EEEEEEEEECSTTSSCCCEEEEEEEEC-CCGGGCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC---------C--CCEEEEECCCCCCCCCCEEEEEECCCC-CCCCCCC
T ss_conf 234578777678888555677457999734999---------8--878999688777788852899954789-8755542
Q ss_pred C------------CCCCCCCCCCCCCEEEEEEE----------CCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 5------------23487558899702475730----------2215899641003545655566708999567788999
Q 000673 387 H------------FEIPAVSYPSGVKFSIHFIQ----------MSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGP 444 (1358)
Q Consensus 387 ~------------~~i~~~~~~~~~~~~i~f~~----------~~~~L~~v~s~~~~~~~~~~~~p~v~iws~~~~~~~~ 444 (1358)
. ..+. ...+...+..+.+.+ +...++... .++. +++|++...
T Consensus 321 ~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s-----~dg~------l~~~~~~~g---- 384 (902)
T 2oaj_A 321 YEGMKNYYANPKQMKIF-PLPTNVPIVNILPIPRQSPYFAGCHNPGLILLIL-----GNGE------IETMLYPSG---- 384 (902)
T ss_dssp HHHHHHHHHSCSEEEEE-CCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEE-----TTSC------EEEEETTTC----
T ss_pred HHHHHHHHCCCCCEEEE-ECCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEC-----CCCC------EEEEECCCC----
T ss_conf 55654664174522787-4189995479999778898867787850699991-----7984------899978999----
Q ss_pred CCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 95114984057630232066434678895334210342589511222457887898412123489719997853067524
Q 000673 445 GKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYA 524 (1358)
Q Consensus 445 ~~~~~~l~~g~~~g~w~~~~~~~~~~~g~~i~~l~~t~~~~~i~~w~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~ 524 (1358)
. ...... . .+ ..+......+..+. .......+|+...... .+....+.+|...+.++.+.++..+
T Consensus 385 -~---~~~~~~-~----~~--~~l~~~~~~v~~~~--~s~~~~~~w~~~~~~~-~~~~~~l~G~~~~v~sv~~spdg~~- 449 (902)
T 2oaj_A 385 -I---FTDKAS-L----FP--QNLSWLRPLATTSM--AASVPNKLWLGALSAA-QNKDYLLKGGVRTKRQKLPAEYGTA- 449 (902)
T ss_dssp -C---EECCGG-G----SC--GGGTTBTTBEEEEE--EEEEEHHHHHHHHHTT-BCCCCSCCCSBCCCCCCCCCSEEEE-
T ss_pred -C---CCCCCC-C----CC--CCCCCCCCCEEEEE--EEECCHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCCCCCE-
T ss_conf -8---556555-6----89--85223589724899--9974999998888604-6999754578577875333666758-
Q ss_pred CCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCEEE-EEEE-----CCCCCEEEEEEECCCCCCCCCCCCCEEEEEE
Q ss_conf 887999983893999990476668999884345875088-9993-----4887789999810456887876685999996
Q 000673 525 PYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSR-QYFL-----GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS 598 (1358)
Q Consensus 525 p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~s~~~~-~~l~-----gH~~~V~~L~~sp~~~~pdg~~~~~~LvSgs 598 (1358)
+++|+.||+|++|++... . ....... ..+. +|...|++++|+ ||| ++|++|+
T Consensus 450 ---laSgs~DgtVrlWd~~~g--~--------~~~~~~~~~~l~~~~~~~h~~~V~svafs-----pdg----~~LAsgs 507 (902)
T 2oaj_A 450 ---FITGHSNGSVRIYDASHG--D--------IQDNASFEVNLSRTLNKAKELAVDKISFA-----AET----LELAVSI 507 (902)
T ss_dssp ---EEEEETTSEEEEEESSCC--T--------TTTTBCEEEEHHHHTTCSSSCCEEEEEEE-----TTT----TEEEEEE
T ss_pred ---EEEECCCCCEEEEECCCC--C--------CCCCCEEEEECHHHCCCCCCCCEEEEEEC-----CCC----CEEEEEE
T ss_conf ---999658983899978776--4--------56773677501541377888764699963-----899----9699994
Q ss_pred CCCCEEEEECCCC---------------------------------------------CEEEEEECCCCCEEEEEECCCC
Q ss_conf 9992999948997---------------------------------------------1799980279868999969999
Q 000673 599 MDCSIRIWDLGSG---------------------------------------------NLITVMHHHVAPVRQIILSPPQ 633 (1358)
Q Consensus 599 ~D~tI~iWDl~tg---------------------------------------------~~l~~l~~h~~~V~~l~~sPd~ 633 (1358)
.|++|++||+.++ +++..+.+|.++|++++|+|+
T Consensus 508 ~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpd- 586 (902)
T 2oaj_A 508 ETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNI- 586 (902)
T ss_dssp TTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBT-
T ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCC-
T ss_conf 5857999992486555754557786651134551346796543224236898877760146999868886779996487-
Q ss_pred CCCCCCCEEEEEECCCCEEEEECCCCCEEE--E---EC-CCCCCCEEEEEC-----CCC---CEEEEEECCCCCCCCCCC
Q ss_conf 999999959999689929999889982899--9---52-899993899995-----999---999997358863249998
Q 000673 634 TEHPWSDCFLSVGEDFSVALASLETLRVER--M---FP-GHPNYPAKVVWD-----CPR---GYIACLCRDHSRTSDAVD 699 (1358)
Q Consensus 634 ~~~~~g~~l~S~s~D~sV~lwdl~~~~~i~--~---l~-~H~~~V~~i~~~-----pd~---~~Li~g~~d~sgssD~Dg 699 (1358)
| ++++++.|++|++||++++..+. . +. +|...|++++|+ ||+ .+|++++ .| +
T Consensus 587 -----G-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs------~D--~ 652 (902)
T 2oaj_A 587 -----G-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGT------DM--G 652 (902)
T ss_dssp -----S-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEE------TT--S
T ss_pred -----C-EEEEEECCCCEEEEECCCCEEEEEEEHHHHCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEE------CC--C
T ss_conf -----6-89999589769999888983999702467264666613999999984178987633899995------68--7
Q ss_pred EEEEEEC---CCCEEEEEEECCC
Q ss_conf 5999979---9990999993889
Q 000673 700 VLFIWDV---KTGARERVLRGTA 719 (1358)
Q Consensus 700 tI~IWdl---~tg~~~~~l~GH~ 719 (1358)
+|++||+ .+|++...+.||.
T Consensus 653 tv~~wd~~p~~~g~~~~~~~~~~ 675 (902)
T 2oaj_A 653 EVITYKILPASGGKFDVQLMDIT 675 (902)
T ss_dssp EEEEEEEEECGGGCEEEEEEEEE
T ss_pred CEEEEEEECCCCCCEEEEECCCE
T ss_conf 39999995589986899966724
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=291.33 Aligned_cols=604 Identities=9% Similarity=-0.002 Sum_probs=343.1
Q ss_pred CCCEEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98216899981699979999078859999866789985320486307675779945314542136743210000146863
Q 000673 15 PSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNV 94 (1358)
Q Consensus 15 p~h~Vtaia~Spdg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (1358)
..+.|++++|+| +++|++++.|++|++||+.+ .+....+. |...|++++|
T Consensus 57 ~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~-----~~~~~~~~-~~~~V~~v~~----------------------- 106 (902)
T 2oaj_A 57 DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS-----QKVLTTVF-VPGKITSIDT----------------------- 106 (902)
T ss_dssp SCCCEEEEEEET-TTEEEEEETTCEEEEEETTT-----CSEEEEEE-CSSCEEEEEC-----------------------
T ss_pred CCCCEEEEEECC-CCEEEEEECCCEEEEEECCC-----CCEEEEEC-CCCCEEEEEE-----------------------
T ss_conf 999779999908-98899998959599998999-----96899974-8998799998-----------------------
Q ss_pred CCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCC-------CCCCCCEEEEECCCCCC-EEEEEEECCCCCCCCCC
Q ss_conf 45556999969995189919999889993699962799-------87899601220799983-49999513577665566
Q 000673 95 MGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPP-------WVGSPSVICTLPSNPRY-VCIGCCFIDTNQLSDHH 166 (1358)
Q Consensus 95 ~~~~s~d~~~LvS~s~Dg~l~iWdl~~G~c~~~~~~~~-------~~~~~s~i~~~~~~~~~-~~l~c~~~~~~~~~~~~ 166 (1358)
++++.+|++++.||.+++||+..+++.... .+. ..+....|..+..+++. ..+.+.+
T Consensus 107 ----sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~-i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~---------- 171 (902)
T 2oaj_A 107 ----DASLDWMLIGLQNGSMIVYDIDRDQLSSFK-LDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY---------- 171 (902)
T ss_dssp ----CTTCSEEEEEETTSCEEEEETTTTEEEEEE-ECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEEC----------
T ss_pred ----CCCCCEEEEECCCCCEEEEECCCCCCCCCE-ECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEE----------
T ss_conf ----799998999949992999999999626503-04321000254457897389997669999899991----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEC---------------CCCCCCCCEEEEEECCCCCCCC
Q ss_conf 5442235543334557889999731899907873299999704---------------5446874068996027787731
Q 000673 167 SFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHG---------------NLSIGPWKFMDVVSLGEDMGKH 231 (1358)
Q Consensus 167 ~~~~~~g~~~s~d~~~~~~~~~~~~I~i~D~~tl~v~~~l~s~---------------~~~~~pis~l~v~~~~~d~~~~ 231 (1358)
.++.| +||..+.+.+..+..+ ..+..++.+++|.. | +
T Consensus 172 ---------------------~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp---d---g 223 (902)
T 2oaj_A 172 ---------------------EYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP---N---S 223 (902)
T ss_dssp ---------------------SSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT---T---S
T ss_pred ---------------------CCCCE-EEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECC---C---C
T ss_conf ---------------------89849-998778965799833557767776544332345677768999859---9---9
Q ss_pred EEEEEECCCCEEEEECCCCCCCCCCCCCCCEECCCCC--CCEEEC-CCCCCCCEEEEEEC----CC-CEEEEEECCC---
Q ss_conf 2899965883799962568655534687410027765--523731-68545820899902----89-6899983480---
Q 000673 232 YGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQL--DMAILQ-NGVVEGGHLVSVAT----CG-NIIALVLKDH--- 300 (1358)
Q Consensus 232 ~~lvs~s~dg~vkvW~l~~~~~~~~~~~~l~e~~~~~--~~i~~~-~~~~~~v~~vs~s~----dg-~~i~~~~~~~--- 300 (1358)
..+++++.|+.+++|++.....-. ...+.+...+. ...... ..+.+.+..++|++ ++ ..++..+.+.
T Consensus 224 ~~lasgs~Dg~i~lWd~~~g~~~~--~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~ 301 (902)
T 2oaj_A 224 LHIITIHEDNSLVFWDANSGHMIM--ARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGD 301 (902)
T ss_dssp SEEEEEETTCCEEEEETTTCCEEE--EECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSS
T ss_pred CEEEEEECCCEEEEEECCCCCEEE--EEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCC
T ss_conf 999999899939999878996888--885012345787776788885556774579997349998878999688777788
Q ss_pred --E--EEEECCCCC-------CCCEE-EEEECCEEEECCCCCCCEEEEEEECCCCHHCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf --6--995148874-------10015-43204225425888873699896103100001134553355321799991699
Q 000673 301 --C--IFRLLGSGS-------TIGEI-CFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRG 368 (1358)
Q Consensus 301 --~--i~d~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~~~~g~~fl~~~d~~~~~~~~~~~~~~~~~i~vw~~~g 368 (1358)
+ +|+.-.... .+..+ .-......... ..+..+....+...... ..... .....+++.+.+|
T Consensus 302 ~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~sp-~~~g~-----~d~~~l~~~s~dg 374 (902)
T 2oaj_A 302 NQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPL-PTNVPIVNILPIPRQSP-YFAGC-----HNPGLILLILGNG 374 (902)
T ss_dssp CCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECC-SSSSCEEEEEECCSSCS-HHHHT-----BSCSEEEEEETTS
T ss_pred CCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEEC-CCCCCEEEEEECCCCCC-CCCCC-----CCCEEEEEECCCC
T ss_conf 85289995478987555425565466417452278741-89995479999778898-86778-----7850699991798
Q ss_pred CEEEEEECCCCCCCCCCCCCCCC-CCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 68999980577556678852348-75588997024757302215899641003545655566708999567788999951
Q 000673 369 SAIVYAISYMNEKFDYEPHFEIP-AVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQ 447 (1358)
Q Consensus 369 ~~~l~~l~~~~~~~~~~~~~~i~-~~~~~~~~~~~i~f~~~~~~L~~v~s~~~~~~~~~~~~p~v~iws~~~~~~~~~~~ 447 (1358)
.+.+|+++.+...... ...+ ........+..+.|.... .++|....... + .
T Consensus 375 ~l~~~~~~~g~~~~~~---~~~~~~l~~~~~~v~~~~~s~~~----------------------~~~w~~~~~~~--~-~ 426 (902)
T 2oaj_A 375 EIETMLYPSGIFTDKA---SLFPQNLSWLRPLATTSMAASVP----------------------NKLWLGALSAA--Q-N 426 (902)
T ss_dssp CEEEEETTTCCEECCG---GGSCGGGTTBTTBEEEEEEEEEE----------------------HHHHHHHHHTT--B-C
T ss_pred CEEEEECCCCCCCCCC---CCCCCCCCCCCCCEEEEEEEECC----------------------HHHHHHHHHCC--C-C
T ss_conf 4899978999855655---56898522358972489999749----------------------99998888604--6-9
Q ss_pred EEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--EEECC-----CCCCCEEEEEEECC
Q ss_conf 149840576302320664346788953342103425895112224578878984--12123-----48971999785306
Q 000673 448 CRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDG--RDDFV-----HKEKIVSSSMVISE 520 (1358)
Q Consensus 448 ~~~l~~g~~~g~w~~~~~~~~~~~g~~i~~l~~t~~~~~i~~w~~~~~~~~~~~--~~~~~-----~h~~~Vts~~~i~~ 520 (1358)
......|.. +.... ....+++. .+++.+.++++++|+.......... ...+. +|...|+++.+.++
T Consensus 427 ~~~~l~G~~---~~v~s-v~~spdg~---~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspd 499 (902)
T 2oaj_A 427 KDYLLKGGV---RTKRQ-KLPAEYGT---AFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAE 499 (902)
T ss_dssp CCCSCCCSB---CCCCC-CCCCSEEE---EEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETT
T ss_pred CCCCCCCCC---CCCCC-CCCCCCCC---EEEEECCCCCEEEEECCCCCCCCCCEEEEECHHHCCCCCCCCEEEEEECCC
T ss_conf 997545785---77875-33366675---899965898389997877645677367750154137788876469996389
Q ss_pred CCCCCCEEEEEECCCCEEEEEECCCCCC---------CCC--CC---C---------------CCCC-CCEEEEEEECCC
Q ss_conf 7524887999983893999990476668---------999--88---4---------------3458-750889993488
Q 000673 521 SFYAPYAIVYGFFSGEIEVIQFDLFERH---------NSP--GA---S---------------LKVN-SHVSRQYFLGHT 570 (1358)
Q Consensus 521 ~~~~p~~lv~G~~dG~I~i~~~~~~~~~---------~~~--~~---~---------------~d~~-s~~~~~~l~gH~ 570 (1358)
..+ +++|+.||+|++|.+...... ... .. . ..++ ..++...+.+|.
T Consensus 500 g~~----LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~ 575 (902)
T 2oaj_A 500 TLE----LAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANK 575 (902)
T ss_dssp TTE----EEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCS
T ss_pred CCE----EEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 996----9999458579999924865557545577866511345513467965432242368988777601469998688
Q ss_pred CCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEE-----EE-CCCCCEEEEEEC-----CCCCCCCCC
Q ss_conf 7789999810456887876685999996999299994899717999-----80-279868999969-----999999999
Q 000673 571 GAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITV-----MH-HHVAPVRQIILS-----PPQTEHPWS 639 (1358)
Q Consensus 571 ~~V~~L~~sp~~~~pdg~~~~~~LvSgs~D~tI~iWDl~tg~~l~~-----l~-~h~~~V~~l~~s-----Pd~~~~~~g 639 (1358)
+.|++++|+ ||| +|++|+.|++|++||+.++..+.. +. +|.+.|+++.|+ ||+ +.+
T Consensus 576 ~~V~svafS-----pdG-----~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg---~~~ 642 (902)
T 2oaj_A 576 GKTSAINNS-----NIG-----FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDG---YSS 642 (902)
T ss_dssp CSEEEEEEC-----BTS-----EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSS---SEE
T ss_pred CCEEEEEEC-----CCC-----EEEEEECCCCEEEEECCCCEEEEEEEHHHHCCCCCCCEEEEEEEEEECCCCC---CCC
T ss_conf 867799964-----876-----8999958976999988898399970246726466661399999998417898---763
Q ss_pred CEEEEEECCCCEEEEEC---CCCCEEEEECCCC-----CCCEEEE-EC----------------------CCCCEEEEEE
Q ss_conf 95999968992999988---9982899952899-----9938999-95----------------------9999999973
Q 000673 640 DCFLSVGEDFSVALASL---ETLRVERMFPGHP-----NYPAKVV-WD----------------------CPRGYIACLC 688 (1358)
Q Consensus 640 ~~l~S~s~D~sV~lwdl---~~~~~i~~l~~H~-----~~V~~i~-~~----------------------pd~~~Li~g~ 688 (1358)
.++++++.|++|++||+ .++++...+.+|. .+|..+. |+ +++..|+
T Consensus 643 ~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~--- 719 (902)
T 2oaj_A 643 ILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLI--- 719 (902)
T ss_dssp EEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEE---
T ss_pred EEEEEEECCCCEEEEEEECCCCCCEEEEECCCEECCCCCCEEEEEEEECCCCCCCCCCHHHHHCCCCCCCCCEEEEE---
T ss_conf 38999956873999999558998689996672440788964799858668797366887897255778877739999---
Q ss_pred CCCCCCCCCCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCCEEECCEECCCCCC-CCCCCCCCCCCCEEEEECCC
Q ss_conf 58863249998599997999909999938897557876632654310004223186113-68852323699399994888
Q 000673 689 RDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSV-SSLLLPIHEDGTFRQSQIQN 767 (1358)
Q Consensus 689 ~d~sgssD~DgtI~IWdl~tg~~~~~l~GH~~~v~~~~~~~~~~~~~isgs~~~g~~~~-s~~l~~~~~D~tir~W~~~~ 767 (1358)
+++ ..||||++.++++.+...+|...+..+.+....+.. .+.. ...++..+.|+++|.|++..
T Consensus 720 -----~~~--~~ir~~~~~~~k~~~k~~~~~~~~~~v~~~~~~~~~---------~~~~~~~~l~~~~~~g~i~~~s~p~ 783 (902)
T 2oaj_A 720 -----TGF--DDIRLITLGKSKSTHKGFKYPLAATGLSYISTVEKN---------NDRKNLTVIITLEINGHLRVFTIPD 783 (902)
T ss_dssp -----ECS--SEEEEECTTCCCEEEEECSSCEEEEEEEEEEEECSS---------SCEEEEEEEEEEETTSEEEEEETTT
T ss_pred -----EEC--CCEEEEECCCCCCEEEECCCCEEEEEEEEEEECCCC---------CCCCCCEEEEEEECCCCEEEEECCC
T ss_conf -----935--405999675335123672562014477788701355---------5446736999992799599997856
Q ss_pred CCCC
Q ss_conf 6543
Q 000673 768 DERG 771 (1358)
Q Consensus 768 ~~~~ 771 (1358)
++..
T Consensus 784 l~~~ 787 (902)
T 2oaj_A 784 FKEQ 787 (902)
T ss_dssp CCEE
T ss_pred HHHH
T ss_conf 4778
Done!