Query 000674
Match_columns 1358
No_of_seqs 745 out of 5013
Neff 7.7
Searched_HMMs 46136
Date Mon Apr 1 21:50:33 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000674.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000674hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0054 Multidrug resistance-a 100.0 2E-246 5E-251 2326.5 135.4 1149 197-1357 122-1279(1381)
2 PLN03130 ABC transporter C fam 100.0 1E-190 3E-195 1919.8 162.2 1316 22-1356 29-1377(1622)
3 PLN03232 ABC transporter C fam 100.0 9E-186 2E-190 1876.3 162.4 1143 194-1356 223-1374(1495)
4 TIGR00957 MRP_assoc_pro multi 100.0 5E-185 1E-189 1871.5 164.1 1328 18-1357 20-1425(1522)
5 TIGR01271 CFTR_protein cystic 100.0 4E-174 8E-179 1758.9 142.4 1147 197-1357 3-1357(1490)
6 PTZ00243 ABC transporter; Prov 100.0 5E-166 1E-170 1678.6 143.4 1157 196-1356 58-1448(1560)
7 KOG0055 Multidrug/pheromone ex 100.0 7E-122 2E-126 1149.6 105.1 1059 267-1351 15-1125(1228)
8 PTZ00265 multidrug resistance 100.0 3E-111 7E-116 1134.2 129.9 1071 274-1355 57-1360(1466)
9 PRK11174 cysteine/glutathione 100.0 7.3E-69 1.6E-73 679.9 74.1 542 269-819 14-584 (588)
10 KOG0058 Peptide exporter, ABC 100.0 1.5E-67 3.2E-72 628.8 64.4 537 270-820 140-705 (716)
11 COG2274 SunT ABC-type bacterio 100.0 9.6E-65 2.1E-69 632.2 72.2 545 267-817 144-706 (709)
12 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.3E-64 2.8E-69 650.8 74.9 542 267-817 126-683 (686)
13 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1E-64 2.2E-69 654.8 73.1 540 270-816 147-709 (710)
14 TIGR00958 3a01208 Conjugate Tr 100.0 2.1E-64 4.6E-69 648.1 72.7 535 272-815 156-710 (711)
15 TIGR03375 type_I_sec_LssB type 100.0 9.9E-64 2.1E-68 643.5 74.4 534 268-808 138-689 (694)
16 PRK11176 lipid transporter ATP 100.0 8.4E-63 1.8E-67 624.3 73.6 543 270-818 18-578 (582)
17 KOG0058 Peptide exporter, ABC 100.0 7E-65 1.5E-69 605.9 49.4 409 938-1351 191-603 (716)
18 TIGR01193 bacteriocin_ABC ABC- 100.0 8.9E-63 1.9E-67 635.9 73.0 536 271-816 150-706 (708)
19 TIGR02203 MsbA_lipidA lipid A 100.0 2.5E-62 5.3E-67 619.3 73.8 542 270-817 7-566 (571)
20 PRK10790 putative multidrug tr 100.0 1.8E-61 3.9E-66 612.5 75.3 538 271-819 17-575 (592)
21 TIGR02204 MsbA_rel ABC transpo 100.0 1.8E-61 3.8E-66 611.8 73.2 542 269-817 10-573 (576)
22 KOG0055 Multidrug/pheromone ex 100.0 5.4E-62 1.2E-66 611.3 64.5 537 270-819 654-1225(1228)
23 PRK11160 cysteine/glutathione 100.0 5.4E-61 1.2E-65 603.6 73.2 540 271-817 10-572 (574)
24 PRK13657 cyclic beta-1,2-gluca 100.0 2.1E-60 4.5E-65 601.9 74.6 534 272-818 14-569 (588)
25 PRK10789 putative multidrug tr 100.0 9.6E-61 2.1E-65 601.3 71.0 526 287-819 5-550 (569)
26 TIGR01846 type_I_sec_HlyB type 100.0 3.3E-60 7.1E-65 610.3 74.6 544 270-818 132-691 (694)
27 TIGR02868 CydC thiol reductant 100.0 1.4E-60 3E-65 597.0 68.8 501 272-779 8-529 (529)
28 TIGR01842 type_I_sec_PrtD type 100.0 2.4E-60 5.2E-65 595.5 70.4 519 275-807 4-542 (544)
29 COG1132 MdlB ABC-type multidru 100.0 5.8E-60 1.3E-64 595.4 72.4 533 275-819 13-564 (567)
30 TIGR01192 chvA glucan exporter 100.0 5.9E-59 1.3E-63 585.8 74.9 535 272-819 14-570 (585)
31 COG4988 CydD ABC-type transpor 100.0 3.6E-59 7.8E-64 548.4 67.6 527 283-820 6-556 (559)
32 TIGR02857 CydD thiol reductant 100.0 3E-59 6.5E-64 584.9 68.6 508 276-791 2-529 (529)
33 PTZ00265 multidrug resistance 100.0 1.5E-58 3.2E-63 623.8 73.4 543 273-818 821-1464(1466)
34 TIGR00957 MRP_assoc_pro multi 100.0 6.1E-57 1.3E-61 615.4 74.4 471 344-818 1031-1519(1522)
35 KOG0057 Mitochondrial Fe/S clu 100.0 4E-57 8.7E-62 521.0 58.5 520 290-818 43-585 (591)
36 PLN03130 ABC transporter C fam 100.0 3.9E-56 8.5E-61 605.9 74.5 472 343-819 978-1474(1622)
37 COG2274 SunT ABC-type bacterio 100.0 1.7E-57 3.6E-62 567.3 55.6 441 910-1355 164-611 (709)
38 PLN03232 ABC transporter C fam 100.0 1.4E-55 3.1E-60 601.1 72.5 471 344-819 976-1471(1495)
39 COG4987 CydC ABC-type transpor 100.0 3.7E-55 8E-60 504.7 62.6 473 340-816 80-570 (573)
40 TIGR02868 CydC thiol reductant 100.0 4.3E-56 9.4E-61 556.4 56.1 409 944-1356 62-473 (529)
41 PTZ00243 ABC transporter; Prov 100.0 1E-54 2.2E-59 591.5 74.1 466 352-819 1032-1546(1560)
42 COG1132 MdlB ABC-type multidru 100.0 4.7E-55 1E-59 550.8 55.6 440 910-1356 24-468 (567)
43 COG4618 ArpD ABC-type protease 100.0 3.3E-54 7.2E-59 491.6 56.2 527 267-807 13-560 (580)
44 TIGR01194 cyc_pep_trnsptr cycl 100.0 7.8E-54 1.7E-58 536.7 64.7 510 271-799 11-551 (555)
45 TIGR00958 3a01208 Conjugate Tr 100.0 6.5E-55 1.4E-59 560.4 55.6 463 887-1356 150-620 (711)
46 TIGR01271 CFTR_protein cystic 100.0 9.4E-53 2E-57 572.4 73.0 471 344-820 951-1453(1490)
47 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 6.3E-54 1.4E-58 551.8 57.8 411 938-1355 179-590 (686)
48 KOG0056 Heavy metal exporter H 100.0 3E-55 6.5E-60 491.3 39.4 456 356-820 297-775 (790)
49 PRK11174 cysteine/glutathione 100.0 6.4E-54 1.4E-58 543.5 56.3 460 887-1355 11-487 (588)
50 TIGR01193 bacteriocin_ABC ABC- 100.0 6E-54 1.3E-58 553.9 55.5 462 886-1355 144-613 (708)
51 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.4E-53 3E-58 551.2 56.3 467 886-1356 142-618 (710)
52 PRK10522 multidrug transporter 100.0 4.6E-52 9.9E-57 520.7 63.6 506 267-799 3-530 (547)
53 PRK10790 putative multidrug tr 100.0 7.8E-53 1.7E-57 533.7 56.2 408 941-1356 71-479 (592)
54 TIGR03375 type_I_sec_LssB type 100.0 8.9E-53 1.9E-57 541.9 57.2 463 886-1356 135-604 (694)
55 TIGR02857 CydD thiol reductant 100.0 2.9E-52 6.3E-57 521.8 56.1 412 938-1355 47-460 (529)
56 PRK11160 cysteine/glutathione 100.0 4.1E-52 8.9E-57 523.2 57.2 409 941-1355 66-477 (574)
57 TIGR02203 MsbA_lipidA lipid A 100.0 6.1E-52 1.3E-56 524.5 56.6 413 938-1356 57-472 (571)
58 PRK11176 lipid transporter ATP 100.0 8.6E-52 1.9E-56 523.8 56.6 408 942-1355 72-482 (582)
59 TIGR01846 type_I_sec_HlyB type 100.0 1.9E-51 4.1E-56 529.1 57.4 464 885-1356 126-596 (694)
60 TIGR02204 MsbA_rel ABC transpo 100.0 5.4E-50 1.2E-54 507.0 57.2 415 939-1356 62-479 (576)
61 PRK13657 cyclic beta-1,2-gluca 100.0 2E-49 4.3E-54 501.9 57.4 446 906-1356 25-474 (588)
62 KOG0056 Heavy metal exporter H 100.0 5.7E-52 1.2E-56 465.0 29.7 406 937-1351 255-673 (790)
63 TIGR00954 3a01203 Peroxysomal 100.0 1.2E-48 2.6E-53 496.1 61.5 504 278-793 97-653 (659)
64 PRK10789 putative multidrug tr 100.0 3E-49 6.4E-54 497.2 53.9 412 938-1355 39-453 (569)
65 TIGR01192 chvA glucan exporter 100.0 8.9E-49 1.9E-53 493.6 57.2 459 889-1355 10-473 (585)
66 COG4987 CydC ABC-type transpor 100.0 1.4E-48 3E-53 450.4 48.1 407 943-1356 66-477 (573)
67 KOG0054 Multidrug resistance-a 100.0 2.2E-47 4.7E-52 491.9 61.2 464 344-817 884-1373(1381)
68 COG5265 ATM1 ABC-type transpor 100.0 1.5E-48 3.2E-53 436.0 38.4 411 400-816 65-495 (497)
69 TIGR01194 cyc_pep_trnsptr cycl 100.0 2.9E-47 6.3E-52 477.4 54.5 429 912-1345 30-468 (555)
70 COG4988 CydD ABC-type transpor 100.0 5.4E-47 1.2E-51 445.8 52.9 416 936-1356 41-459 (559)
71 TIGR01842 type_I_sec_PrtD type 100.0 5.7E-47 1.2E-51 474.8 55.4 405 938-1355 49-456 (544)
72 KOG0057 Mitochondrial Fe/S clu 100.0 1.3E-46 2.8E-51 434.2 44.2 409 936-1351 75-486 (591)
73 TIGR00956 3a01205 Pleiotropic 100.0 3.2E-46 7E-51 504.3 49.5 190 610-806 74-299 (1394)
74 PRK10261 glutathione transport 100.0 4.1E-47 9E-52 480.3 37.3 206 593-806 11-257 (623)
75 PRK09700 D-allose transporter 100.0 3.1E-47 6.8E-52 473.5 34.9 196 594-803 5-230 (510)
76 PRK13549 xylose transporter AT 100.0 9.6E-47 2.1E-51 468.3 35.4 194 594-801 5-226 (506)
77 PRK15134 microcin C ABC transp 100.0 8.5E-47 1.8E-51 471.3 34.4 204 594-805 5-244 (529)
78 COG1123 ATPase components of v 100.0 3.4E-46 7.4E-51 441.6 35.9 206 594-808 5-245 (539)
79 TIGR02633 xylG D-xylose ABC tr 100.0 2.7E-46 5.8E-51 464.3 35.2 193 595-800 2-223 (500)
80 PRK15439 autoinducer 2 ABC tra 100.0 5.1E-46 1.1E-50 461.5 36.8 198 594-805 11-227 (510)
81 PRK15064 ABC transporter ATP-b 100.0 1.6E-45 3.4E-50 460.1 41.0 206 595-807 2-242 (530)
82 PRK10762 D-ribose transporter 100.0 4.4E-46 9.4E-51 461.9 34.7 193 594-800 4-223 (501)
83 TIGR03269 met_CoM_red_A2 methy 100.0 4.7E-46 1E-50 464.1 34.9 194 595-802 1-253 (520)
84 TIGR01257 rim_protein retinal- 100.0 3E-43 6.6E-48 472.2 64.2 202 593-807 927-1149(2272)
85 PRK10938 putative molybdenum t 100.0 4.9E-46 1.1E-50 460.9 34.7 196 595-805 4-222 (490)
86 COG5265 ATM1 ABC-type transpor 100.0 1.1E-45 2.3E-50 413.2 30.3 391 956-1350 3-397 (497)
87 PRK11819 putative ABC transpor 100.0 7.3E-45 1.6E-49 455.4 41.5 206 594-807 6-250 (556)
88 PRK11288 araG L-arabinose tran 100.0 2.7E-45 5.9E-50 454.8 35.8 192 594-799 4-221 (501)
89 PRK10982 galactose/methyl gala 100.0 5.6E-45 1.2E-49 451.3 36.1 190 598-801 2-217 (491)
90 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.2E-44 4.8E-49 451.1 41.9 206 594-807 4-248 (552)
91 PRK14257 phosphate ABC transpo 100.0 6.6E-45 1.4E-49 423.8 25.7 263 528-808 23-314 (329)
92 PRK10522 multidrug transporter 100.0 1.2E-41 2.6E-46 426.7 53.3 381 946-1341 59-443 (547)
93 PRK10636 putative ABC transpor 100.0 1E-42 2.2E-47 440.5 42.6 206 595-807 2-236 (638)
94 COG1126 GlnQ ABC-type polar am 100.0 2.7E-44 5.8E-49 372.5 20.6 202 594-809 2-227 (240)
95 PRK11147 ABC transporter ATPas 100.0 4.5E-42 9.7E-47 435.9 40.7 204 594-807 3-243 (635)
96 COG0488 Uup ATPase components 100.0 4.3E-42 9.4E-47 416.4 37.0 206 594-808 3-241 (530)
97 PLN03140 ABC transporter G fam 100.0 1.6E-40 3.4E-45 446.8 47.3 197 610-806 178-426 (1470)
98 PLN03073 ABC transporter F fam 100.0 3.5E-40 7.5E-45 417.8 41.1 204 593-806 176-430 (718)
99 TIGR00954 3a01203 Peroxysomal 100.0 2E-39 4.3E-44 412.0 47.7 439 901-1355 97-584 (659)
100 COG4172 ABC-type uncharacteriz 100.0 1.8E-40 3.9E-45 368.1 31.0 206 593-806 5-246 (534)
101 cd03289 ABCC_CFTR2 The CFTR su 100.0 6.8E-41 1.5E-45 380.5 27.1 222 594-818 2-236 (275)
102 COG1125 OpuBA ABC-type proline 100.0 1.3E-41 2.8E-46 358.5 19.5 203 595-810 2-228 (309)
103 COG1135 AbcC ABC-type metal io 100.0 1.6E-41 3.4E-46 369.2 20.3 204 595-809 2-233 (339)
104 COG1116 TauB ABC-type nitrate/ 100.0 2.2E-41 4.8E-46 362.8 20.5 190 594-797 3-212 (248)
105 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 6.3E-41 1.4E-45 364.9 23.9 201 593-808 3-228 (254)
106 COG1120 FepC ABC-type cobalami 100.0 6.8E-41 1.5E-45 366.9 21.4 201 594-808 2-229 (258)
107 COG4618 ArpD ABC-type protease 100.0 3.7E-38 7.9E-43 360.5 41.0 402 943-1355 71-474 (580)
108 COG3839 MalK ABC-type sugar tr 100.0 2.3E-40 5E-45 376.2 22.4 203 594-810 3-226 (338)
109 COG1127 Ttg2A ABC-type transpo 100.0 7.5E-40 1.6E-44 344.7 23.0 204 592-810 6-238 (263)
110 COG1118 CysA ABC-type sulfate/ 100.0 2.9E-40 6.3E-45 358.1 19.0 203 594-810 2-230 (345)
111 COG1117 PstB ABC-type phosphat 100.0 2.8E-40 6E-45 340.5 16.8 206 593-809 6-239 (253)
112 COG3842 PotA ABC-type spermidi 100.0 4.8E-40 1E-44 375.5 20.2 204 593-810 4-229 (352)
113 COG1136 SalX ABC-type antimicr 100.0 2.1E-39 4.5E-44 348.4 23.5 193 595-797 2-221 (226)
114 PRK13409 putative ATPase RIL; 100.0 4.8E-39 1.1E-43 400.9 29.6 179 599-794 78-287 (590)
115 cd03291 ABCC_CFTR1 The CFTR su 100.0 1.5E-38 3.3E-43 362.6 30.5 219 589-812 34-252 (282)
116 cd03252 ABCC_Hemolysin The ABC 100.0 1.2E-38 2.5E-43 357.8 27.3 219 595-815 1-233 (237)
117 cd03250 ABCC_MRP_domain1 Domai 100.0 7.9E-39 1.7E-43 350.7 24.7 201 595-795 1-204 (204)
118 COG3638 ABC-type phosphate/pho 100.0 2.5E-39 5.5E-44 339.8 19.2 200 594-806 3-236 (258)
119 COG3840 ThiQ ABC-type thiamine 100.0 7.1E-39 1.5E-43 321.3 18.9 199 595-809 2-221 (231)
120 COG1129 MglA ABC-type sugar tr 100.0 1.1E-37 2.5E-42 367.2 31.6 197 593-799 7-226 (500)
121 COG1122 CbiO ABC-type cobalt t 100.0 1.5E-38 3.3E-43 349.2 22.5 202 594-808 3-229 (235)
122 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 4.5E-38 9.8E-43 353.2 26.4 215 595-810 1-229 (238)
123 COG3845 ABC-type uncharacteriz 100.0 2.4E-37 5.3E-42 355.6 31.7 192 593-798 3-220 (501)
124 COG1124 DppF ABC-type dipeptid 100.0 3.2E-38 7E-43 334.6 22.4 205 594-808 3-232 (252)
125 cd03254 ABCC_Glucan_exporter_l 100.0 7.1E-38 1.5E-42 349.6 26.0 212 594-808 2-227 (229)
126 cd03251 ABCC_MsbA MsbA is an e 100.0 9.5E-38 2.1E-42 349.8 26.7 214 595-810 1-228 (234)
127 cd03253 ABCC_ATM1_transporter 100.0 1.3E-37 2.9E-42 349.1 27.4 215 595-812 1-229 (236)
128 COG2884 FtsE Predicted ATPase 100.0 2.1E-38 4.5E-43 321.1 18.6 193 595-800 2-219 (223)
129 cd03288 ABCC_SUR2 The SUR doma 100.0 1.5E-37 3.1E-42 352.6 27.9 216 592-809 17-245 (257)
130 TIGR02314 ABC_MetN D-methionin 100.0 3.7E-38 8.1E-43 367.5 23.5 203 595-808 2-231 (343)
131 PRK11650 ugpC glycerol-3-phosp 100.0 5.9E-38 1.3E-42 369.0 25.1 203 594-809 3-226 (356)
132 cd03244 ABCC_MRP_domain2 Domai 100.0 1.7E-37 3.8E-42 344.5 25.6 206 594-801 2-220 (221)
133 PRK11432 fbpC ferric transport 100.0 1.6E-37 3.4E-42 364.2 25.2 203 593-809 5-228 (351)
134 PRK13631 cbiO cobalt transport 100.0 1.9E-37 4E-42 360.3 25.4 208 591-808 18-266 (320)
135 cd03261 ABC_Org_Solvent_Resist 100.0 1.5E-37 3.2E-42 348.4 23.5 199 595-807 1-226 (235)
136 cd03245 ABCC_bacteriocin_expor 100.0 3.9E-37 8.5E-42 341.5 25.6 205 594-800 2-220 (220)
137 TIGR03265 PhnT2 putative 2-ami 100.0 2.2E-37 4.7E-42 363.8 23.9 202 594-809 4-226 (353)
138 TIGR01186 proV glycine betaine 100.0 1.4E-37 3.1E-42 364.4 21.8 189 610-809 6-221 (363)
139 PRK13643 cbiO cobalt transport 100.0 3.2E-37 7E-42 354.8 24.2 204 595-808 2-234 (288)
140 PRK13634 cbiO cobalt transport 100.0 3.7E-37 8E-42 354.7 24.3 204 595-808 3-236 (290)
141 PRK13650 cbiO cobalt transport 100.0 3.9E-37 8.4E-42 352.8 24.2 204 594-808 4-230 (279)
142 PRK09452 potA putrescine/sperm 100.0 4.6E-37 1E-41 362.5 25.4 204 592-809 12-236 (375)
143 PRK13637 cbiO cobalt transport 100.0 4.4E-37 9.6E-42 353.5 23.9 206 594-808 2-235 (287)
144 TIGR03258 PhnT 2-aminoethylpho 100.0 4.2E-37 9.1E-42 361.7 23.8 203 593-809 4-230 (362)
145 PRK10851 sulfate/thiosulfate t 100.0 6.1E-37 1.3E-41 360.0 25.1 201 595-809 3-228 (353)
146 cd03296 ABC_CysA_sulfate_impor 100.0 7.8E-37 1.7E-41 343.3 24.7 199 595-807 3-226 (239)
147 PRK13651 cobalt transporter AT 100.0 8.9E-37 1.9E-41 352.6 24.7 204 595-808 3-255 (305)
148 PRK13537 nodulation ABC transp 100.0 7.8E-37 1.7E-41 353.9 24.1 202 593-808 6-228 (306)
149 cd03219 ABC_Mj1267_LivG_branch 100.0 6.7E-37 1.5E-41 343.4 22.6 199 595-807 1-232 (236)
150 PRK11000 maltose/maltodextrin 100.0 9E-37 2E-41 361.5 24.5 202 594-809 3-225 (369)
151 cd03259 ABC_Carb_Solutes_like 100.0 7.2E-37 1.6E-41 337.5 21.5 192 595-800 1-213 (213)
152 cd03290 ABCC_SUR1_N The SUR do 100.0 1.6E-36 3.6E-41 335.9 24.3 198 596-795 2-218 (218)
153 PRK13646 cbiO cobalt transport 100.0 1.1E-36 2.3E-41 350.5 23.6 205 594-808 2-236 (286)
154 PRK13647 cbiO cobalt transport 100.0 1.2E-36 2.5E-41 348.0 23.8 199 594-805 4-225 (274)
155 cd03265 ABC_DrrA DrrA is the A 100.0 9.3E-37 2E-41 338.3 22.0 197 595-805 1-219 (220)
156 TIGR00960 3a0501s02 Type II (G 100.0 8.5E-37 1.8E-41 337.8 21.3 190 595-796 2-216 (216)
157 PRK11153 metN DL-methionine tr 100.0 1.4E-36 3.1E-41 357.0 24.5 203 595-808 2-231 (343)
158 cd03226 ABC_cobalt_CbiO_domain 100.0 1.1E-36 2.3E-41 334.1 21.9 188 597-797 2-205 (205)
159 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.2E-36 2.6E-41 337.5 22.4 197 595-802 1-218 (220)
160 cd03260 ABC_PstB_phosphate_tra 100.0 1.1E-36 2.4E-41 339.5 22.1 197 595-804 1-226 (227)
161 cd03268 ABC_BcrA_bacitracin_re 100.0 2E-36 4.4E-41 332.7 23.4 192 595-800 1-208 (208)
162 PRK14250 phosphate ABC transpo 100.0 2.8E-36 6.1E-41 339.0 24.8 202 594-808 3-222 (241)
163 cd03256 ABC_PhnC_transporter A 100.0 1.7E-36 3.8E-41 341.2 23.0 199 595-806 1-233 (241)
164 TIGR02315 ABC_phnC phosphonate 100.0 2E-36 4.4E-41 341.0 23.4 198 595-805 2-233 (243)
165 PRK09536 btuD corrinoid ABC tr 100.0 2.1E-36 4.7E-41 358.6 24.6 201 594-808 3-229 (402)
166 PRK13635 cbiO cobalt transport 100.0 3.5E-36 7.5E-41 344.7 25.4 203 594-808 5-230 (279)
167 cd03224 ABC_TM1139_LivF_branch 100.0 2.7E-36 5.7E-41 335.4 23.5 198 595-806 1-220 (222)
168 PRK11607 potG putrescine trans 100.0 2.7E-36 5.9E-41 356.7 25.0 205 592-810 17-242 (377)
169 PRK13644 cbiO cobalt transport 100.0 3.1E-36 6.8E-41 344.4 24.7 200 595-807 2-224 (274)
170 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.7E-36 3.8E-41 335.8 21.5 191 595-796 1-218 (218)
171 PRK13536 nodulation factor exp 100.0 2.5E-36 5.4E-41 353.1 23.7 202 593-808 40-262 (340)
172 PRK13641 cbiO cobalt transport 100.0 3.3E-36 7.2E-41 346.5 24.4 204 594-807 2-234 (287)
173 TIGR01288 nodI ATP-binding ABC 100.0 3.4E-36 7.4E-41 349.1 24.6 201 593-807 3-224 (303)
174 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 3.9E-36 8.4E-41 337.0 24.1 200 595-808 2-222 (236)
175 PRK11247 ssuB aliphatic sulfon 100.0 5E-36 1.1E-40 338.6 24.9 197 593-803 11-219 (257)
176 PRK11629 lolD lipoprotein tran 100.0 3.6E-36 7.9E-41 336.5 23.6 197 594-801 5-228 (233)
177 cd03294 ABC_Pro_Gly_Bertaine T 100.0 2.2E-36 4.7E-41 345.0 22.0 198 597-808 27-251 (269)
178 cd03258 ABC_MetN_methionine_tr 100.0 3.7E-36 8.1E-41 336.6 23.2 202 595-807 2-230 (233)
179 PRK14269 phosphate ABC transpo 100.0 3.7E-36 8E-41 339.2 23.3 204 594-808 2-231 (246)
180 cd03235 ABC_Metallic_Cations A 100.0 2.7E-36 5.9E-41 332.9 21.8 189 597-800 2-213 (213)
181 PRK14242 phosphate transporter 100.0 3.9E-36 8.4E-41 340.7 23.5 205 593-808 5-238 (253)
182 cd03369 ABCC_NFT1 Domain 2 of 100.0 6.8E-36 1.5E-40 328.2 24.7 189 593-801 5-206 (207)
183 cd03263 ABC_subfamily_A The AB 100.0 4.3E-36 9.3E-41 333.2 23.3 198 595-805 1-219 (220)
184 cd03266 ABC_NatA_sodium_export 100.0 3.5E-36 7.5E-41 333.4 22.5 195 595-800 2-218 (218)
185 cd03218 ABC_YhbG The ABC trans 100.0 3.8E-36 8.1E-41 336.4 22.8 199 595-807 1-222 (232)
186 PRK13636 cbiO cobalt transport 100.0 5.1E-36 1.1E-40 344.3 24.4 202 594-808 5-232 (283)
187 COG1131 CcmA ABC-type multidru 100.0 5E-36 1.1E-40 343.8 24.2 201 594-807 4-226 (293)
188 cd03301 ABC_MalK_N The N-termi 100.0 3.2E-36 7E-41 332.4 21.8 192 595-800 1-213 (213)
189 cd03248 ABCC_TAP TAP, the Tran 100.0 5.8E-36 1.3E-40 333.5 23.8 205 591-796 8-226 (226)
190 PRK14273 phosphate ABC transpo 100.0 6.2E-36 1.3E-40 339.1 24.4 205 593-808 6-239 (254)
191 TIGR00972 3a0107s01c2 phosphat 100.0 6.6E-36 1.4E-40 337.4 24.4 203 595-808 2-233 (247)
192 COG4555 NatA ABC-type Na+ tran 100.0 1.7E-36 3.6E-41 309.5 17.5 201 595-808 2-223 (245)
193 PRK09493 glnQ glutamine ABC tr 100.0 7.7E-36 1.7E-40 335.5 24.2 200 595-808 2-226 (240)
194 cd03295 ABC_OpuCA_Osmoprotecti 100.0 4.7E-36 1E-40 337.6 22.2 202 595-807 1-225 (242)
195 PRK13649 cbiO cobalt transport 100.0 6.9E-36 1.5E-40 343.4 23.9 205 594-808 2-235 (280)
196 PRK13640 cbiO cobalt transport 100.0 8.3E-36 1.8E-40 342.4 24.3 204 593-808 4-233 (282)
197 PRK13642 cbiO cobalt transport 100.0 1E-35 2.2E-40 341.0 24.8 204 594-808 4-230 (277)
198 PRK15079 oligopeptide ABC tran 100.0 8E-36 1.7E-40 347.9 24.4 208 592-809 6-253 (331)
199 PRK13632 cbiO cobalt transport 100.0 8.5E-36 1.8E-40 340.7 24.1 204 593-808 6-232 (271)
200 COG0410 LivF ABC-type branched 100.0 7.7E-36 1.7E-40 314.6 21.7 206 594-809 3-228 (237)
201 PRK13645 cbiO cobalt transport 100.0 8.3E-36 1.8E-40 344.0 24.0 206 593-808 5-241 (289)
202 cd03269 ABC_putative_ATPase Th 100.0 6.9E-36 1.5E-40 329.0 22.3 192 595-800 1-210 (210)
203 PRK11831 putative ABC transpor 100.0 8.7E-36 1.9E-40 340.2 23.9 202 593-808 6-234 (269)
204 PRK10744 pstB phosphate transp 100.0 1.1E-35 2.5E-40 337.9 24.5 207 591-808 10-245 (260)
205 PRK10619 histidine/lysine/argi 100.0 9.6E-36 2.1E-40 338.0 23.8 204 592-808 3-242 (257)
206 TIGR02211 LolD_lipo_ex lipopro 100.0 7.4E-36 1.6E-40 331.5 22.3 192 595-797 2-220 (221)
207 TIGR03415 ABC_choXWV_ATP choli 100.0 5.3E-36 1.2E-40 352.4 22.3 189 610-809 37-256 (382)
208 PRK13633 cobalt transporter AT 100.0 1.5E-35 3.3E-40 340.0 25.0 204 594-808 4-234 (280)
209 PRK11300 livG leucine/isoleuci 100.0 1.4E-35 3.1E-40 336.5 24.5 200 594-807 5-243 (255)
210 PRK11231 fecE iron-dicitrate t 100.0 1.7E-35 3.7E-40 335.6 24.7 199 595-807 3-227 (255)
211 PRK11614 livF leucine/isoleuci 100.0 2E-35 4.4E-40 331.5 24.9 201 594-807 5-226 (237)
212 PRK13648 cbiO cobalt transport 100.0 1.7E-35 3.7E-40 338.0 24.6 203 594-808 7-232 (269)
213 PRK11264 putative amino-acid A 100.0 1.1E-35 2.3E-40 336.6 22.7 201 594-808 3-234 (250)
214 COG4615 PvdE ABC-type sideroph 100.0 6.9E-33 1.5E-37 306.6 44.1 505 269-799 5-529 (546)
215 COG4175 ProV ABC-type proline/ 100.0 5.5E-36 1.2E-40 324.5 19.1 188 612-810 43-257 (386)
216 PRK13548 hmuV hemin importer A 100.0 2.7E-35 5.7E-40 334.2 25.7 199 595-807 3-230 (258)
217 PRK13638 cbiO cobalt transport 100.0 1.6E-35 3.5E-40 338.6 24.0 200 595-808 2-226 (271)
218 PRK10070 glycine betaine trans 100.0 1.1E-35 2.3E-40 352.4 23.3 188 611-809 42-256 (400)
219 cd03264 ABC_drug_resistance_li 100.0 1.3E-35 2.7E-40 327.2 22.3 190 595-800 1-211 (211)
220 TIGR03410 urea_trans_UrtE urea 100.0 1.4E-35 3E-40 331.3 22.8 198 595-805 1-219 (230)
221 PRK13652 cbiO cobalt transport 100.0 2.4E-35 5.3E-40 337.8 25.2 202 594-808 3-228 (277)
222 PRK13639 cbiO cobalt transport 100.0 1.6E-35 3.4E-40 339.1 23.6 201 595-808 2-227 (275)
223 PRK10895 lipopolysaccharide AB 100.0 2.1E-35 4.6E-40 332.1 24.3 200 594-807 3-226 (241)
224 PRK14235 phosphate transporter 100.0 2.2E-35 4.8E-40 336.5 24.7 206 591-807 16-251 (267)
225 cd03292 ABC_FtsE_transporter F 100.0 1.1E-35 2.4E-40 328.5 21.3 189 595-796 1-214 (214)
226 TIGR03411 urea_trans_UrtD urea 100.0 2E-35 4.2E-40 332.7 23.7 198 595-807 3-231 (242)
227 PRK10575 iron-hydroxamate tran 100.0 2.2E-35 4.7E-40 336.4 24.3 202 592-807 9-237 (265)
228 TIGR02769 nickel_nikE nickel i 100.0 2.1E-35 4.6E-40 336.5 24.2 205 595-809 3-242 (265)
229 cd03298 ABC_ThiQ_thiamine_tran 100.0 2E-35 4.4E-40 325.5 23.1 190 595-800 1-211 (211)
230 PRK10253 iron-enterobactin tra 100.0 2.4E-35 5.3E-40 336.0 24.3 203 591-807 4-233 (265)
231 PRK11124 artP arginine transpo 100.0 2.7E-35 5.8E-40 331.6 24.3 199 594-806 2-229 (242)
232 TIGR02673 FtsE cell division A 100.0 1.1E-35 2.3E-40 328.6 20.6 188 595-795 2-214 (214)
233 cd03225 ABC_cobalt_CbiO_domain 100.0 1.1E-35 2.4E-40 327.6 20.8 187 597-795 2-211 (211)
234 PRK10247 putative ABC transpor 100.0 1.5E-35 3.3E-40 329.5 22.0 198 593-803 6-223 (225)
235 PRK14245 phosphate ABC transpo 100.0 1.6E-35 3.5E-40 334.9 22.5 204 594-808 3-235 (250)
236 PRK10584 putative ABC transpor 100.0 2.3E-35 5E-40 329.1 23.5 196 593-799 5-227 (228)
237 PRK14259 phosphate ABC transpo 100.0 2.9E-35 6.2E-40 335.8 24.6 206 592-808 11-254 (269)
238 cd03247 ABCC_cytochrome_bd The 100.0 2.3E-35 5E-40 315.9 22.1 166 595-800 1-178 (178)
239 TIGR03522 GldA_ABC_ATP gliding 100.0 2.4E-35 5.3E-40 341.5 23.9 198 595-807 3-221 (301)
240 TIGR01188 drrA daunorubicin re 100.0 1.4E-35 3E-40 343.9 21.9 187 610-807 6-213 (302)
241 TIGR03873 F420-0_ABC_ATP propo 100.0 2.7E-35 5.8E-40 334.2 23.7 199 595-807 2-226 (256)
242 PRK14268 phosphate ABC transpo 100.0 2.3E-35 5.1E-40 334.9 23.2 205 593-808 11-243 (258)
243 PRK14237 phosphate transporter 100.0 3.6E-35 7.8E-40 334.8 24.5 208 590-808 16-252 (267)
244 PRK10771 thiQ thiamine transpo 100.0 7.3E-35 1.6E-39 325.8 26.4 198 595-808 2-220 (232)
245 PRK14274 phosphate ABC transpo 100.0 3.8E-35 8.2E-40 333.6 24.5 205 593-808 11-244 (259)
246 TIGR03005 ectoine_ehuA ectoine 100.0 2.9E-35 6.4E-40 333.2 23.5 200 595-808 1-237 (252)
247 PRK14249 phosphate ABC transpo 100.0 3.7E-35 8.1E-40 332.1 24.2 204 594-808 4-236 (251)
248 PRK14248 phosphate ABC transpo 100.0 3.3E-35 7.2E-40 335.6 23.9 206 592-808 19-253 (268)
249 PRK14270 phosphate ABC transpo 100.0 3.4E-35 7.3E-40 332.5 23.6 204 594-808 4-236 (251)
250 TIGR03740 galliderm_ABC gallid 100.0 3.4E-35 7.4E-40 326.5 23.2 196 595-804 1-210 (223)
251 PRK09984 phosphonate/organopho 100.0 5.2E-35 1.1E-39 333.0 25.1 198 594-805 4-240 (262)
252 PRK11308 dppF dipeptide transp 100.0 4.3E-35 9.3E-40 341.6 24.8 207 593-809 4-246 (327)
253 PRK14247 phosphate ABC transpo 100.0 3.8E-35 8.3E-40 332.0 23.7 204 594-808 3-235 (250)
254 PRK14251 phosphate ABC transpo 100.0 4.5E-35 9.8E-40 331.6 23.8 204 594-808 4-236 (251)
255 PRK11248 tauB taurine transpor 100.0 4.4E-35 9.6E-40 331.4 23.7 194 595-802 2-215 (255)
256 cd03257 ABC_NikE_OppD_transpor 100.0 5.1E-35 1.1E-39 326.5 23.8 196 595-800 2-228 (228)
257 PRK14240 phosphate transporter 100.0 4.8E-35 1E-39 331.2 23.9 204 594-808 3-235 (250)
258 PRK14239 phosphate transporter 100.0 4.3E-35 9.2E-40 332.1 23.4 204 594-808 5-237 (252)
259 PRK10908 cell division protein 100.0 3.9E-35 8.4E-40 325.8 22.6 190 595-797 2-216 (222)
260 PRK11144 modC molybdate transp 100.0 6E-35 1.3E-39 344.5 24.6 198 595-809 2-220 (352)
261 TIGR01978 sufC FeS assembly AT 100.0 4.7E-35 1E-39 330.0 22.6 199 595-806 1-233 (243)
262 PRK15112 antimicrobial peptide 100.0 8.1E-35 1.8E-39 331.9 24.7 206 594-809 4-241 (267)
263 cd03262 ABC_HisP_GlnQ_permease 100.0 3.2E-35 6.9E-40 324.6 20.6 188 595-796 1-213 (213)
264 PRK09544 znuC high-affinity zi 100.0 9.9E-35 2.1E-39 327.3 24.7 199 594-807 4-209 (251)
265 PRK14238 phosphate transporter 100.0 7.9E-35 1.7E-39 332.5 24.0 205 593-808 23-256 (271)
266 cd03223 ABCD_peroxisomal_ALDP 100.0 5.4E-35 1.2E-39 309.0 20.9 162 595-795 1-164 (166)
267 PRK14243 phosphate transporter 100.0 8.8E-35 1.9E-39 331.0 24.2 204 594-808 10-249 (264)
268 PRK11022 dppD dipeptide transp 100.0 7.5E-35 1.6E-39 339.8 24.2 208 594-809 3-245 (326)
269 PRK14236 phosphate transporter 100.0 1E-34 2.2E-39 331.9 24.5 207 591-808 22-257 (272)
270 cd03246 ABCC_Protease_Secretio 100.0 5.2E-35 1.1E-39 311.7 20.4 160 595-796 1-173 (173)
271 TIGR00968 3a0106s01 sulfate AB 100.0 1.1E-34 2.3E-39 325.3 23.9 199 595-807 1-220 (237)
272 PRK14267 phosphate ABC transpo 100.0 8E-35 1.7E-39 329.9 23.0 204 594-808 4-238 (253)
273 PRK14244 phosphate ABC transpo 100.0 6.5E-35 1.4E-39 330.2 22.0 203 595-808 6-238 (251)
274 PRK14262 phosphate ABC transpo 100.0 8.7E-35 1.9E-39 329.0 22.6 204 594-808 3-235 (250)
275 TIGR01277 thiQ thiamine ABC tr 100.0 1.4E-34 3E-39 319.2 23.5 190 596-801 2-212 (213)
276 PRK11701 phnK phosphonate C-P 100.0 1.3E-34 2.8E-39 329.0 23.8 206 594-808 6-242 (258)
277 cd03300 ABC_PotA_N PotA is an 100.0 8.3E-35 1.8E-39 325.2 21.9 200 595-808 1-221 (232)
278 COG1137 YhbG ABC-type (unclass 100.0 4.9E-36 1.1E-40 305.7 10.7 208 594-809 4-230 (243)
279 PRK14256 phosphate ABC transpo 100.0 1.5E-34 3.2E-39 327.5 23.9 205 593-808 3-237 (252)
280 cd03299 ABC_ModC_like Archeal 100.0 1.5E-34 3.2E-39 323.7 23.4 199 595-808 1-220 (235)
281 PRK14253 phosphate ABC transpo 100.0 1.4E-34 3E-39 327.2 23.4 203 594-807 3-233 (249)
282 PRK15093 antimicrobial peptide 100.0 1.2E-34 2.6E-39 339.2 23.4 208 594-809 3-250 (330)
283 PRK14261 phosphate ABC transpo 100.0 1.8E-34 3.9E-39 327.0 23.6 204 594-808 6-238 (253)
284 PRK15056 manganese/iron transp 100.0 1.8E-34 4E-39 329.9 23.8 200 594-807 6-230 (272)
285 PRK14252 phosphate ABC transpo 100.0 2.4E-34 5.2E-39 328.0 24.4 205 592-807 14-249 (265)
286 PRK14254 phosphate ABC transpo 100.0 1.7E-34 3.7E-39 331.5 23.4 206 592-808 37-270 (285)
287 PRK14275 phosphate ABC transpo 100.0 1.7E-34 3.7E-39 332.0 23.3 206 592-808 37-271 (286)
288 PRK13547 hmuV hemin importer A 100.0 2.3E-34 4.9E-39 327.8 24.0 199 595-807 2-244 (272)
289 PRK13546 teichoic acids export 100.0 3E-34 6.5E-39 325.1 24.8 208 593-811 3-236 (264)
290 PRK10418 nikD nickel transport 100.0 4.1E-34 8.9E-39 324.0 25.8 204 594-809 4-232 (254)
291 PRK09473 oppD oligopeptide tra 100.0 1.7E-34 3.7E-39 337.0 23.3 210 592-809 10-253 (330)
292 PRK14260 phosphate ABC transpo 100.0 2.5E-34 5.5E-39 326.6 23.4 204 594-808 7-244 (259)
293 PRK14271 phosphate ABC transpo 100.0 2.3E-34 4.9E-39 329.2 23.1 205 593-808 20-252 (276)
294 PRK14265 phosphate ABC transpo 100.0 4E-34 8.6E-39 327.1 25.0 206 592-808 18-259 (274)
295 COG4178 ABC-type uncharacteriz 100.0 3E-31 6.6E-36 318.5 50.8 437 339-791 107-586 (604)
296 PRK14266 phosphate ABC transpo 100.0 2.4E-34 5.2E-39 325.5 22.8 204 594-808 3-235 (250)
297 PRK14263 phosphate ABC transpo 100.0 3.7E-34 8E-39 325.0 24.3 205 593-808 7-246 (261)
298 PRK14241 phosphate transporter 100.0 3E-34 6.5E-39 326.0 23.4 204 594-808 4-243 (258)
299 PRK14264 phosphate ABC transpo 100.0 3.6E-34 7.7E-39 332.1 24.2 205 593-808 44-290 (305)
300 PRK10419 nikE nickel transport 100.0 3.6E-34 7.8E-39 326.6 23.2 207 594-810 3-244 (268)
301 TIGR02142 modC_ABC molybdenum 100.0 3.6E-34 7.8E-39 338.4 23.9 195 599-809 4-223 (354)
302 PRK14258 phosphate ABC transpo 100.0 3.9E-34 8.5E-39 325.3 23.2 205 594-808 7-246 (261)
303 PRK14272 phosphate ABC transpo 100.0 4.1E-34 9E-39 324.0 23.2 204 594-808 4-237 (252)
304 cd03234 ABCG_White The White s 100.0 3.7E-34 8E-39 318.8 22.1 199 595-800 4-226 (226)
305 COG4181 Predicted ABC-type tra 100.0 1.1E-34 2.5E-39 287.8 15.9 194 594-798 6-226 (228)
306 PRK14255 phosphate ABC transpo 100.0 5E-34 1.1E-38 323.2 23.4 204 594-808 5-237 (252)
307 cd03297 ABC_ModC_molybdenum_tr 100.0 3.5E-34 7.7E-39 316.3 21.4 185 599-800 5-214 (214)
308 TIGR02982 heterocyst_DevA ABC 100.0 4.1E-34 8.8E-39 317.1 21.7 191 595-796 2-219 (220)
309 cd03230 ABC_DR_subfamily_A Thi 100.0 6.1E-34 1.3E-38 303.4 21.1 159 595-796 1-173 (173)
310 cd03213 ABCG_EPDR ABCG transpo 100.0 5.6E-34 1.2E-38 309.3 21.1 174 594-800 3-194 (194)
311 COG4559 ABC-type hemin transpo 100.0 3.3E-34 7.1E-39 294.9 18.1 204 595-808 2-231 (259)
312 TIGR02323 CP_lyasePhnK phospho 100.0 9.7E-34 2.1E-38 321.1 23.6 205 594-808 3-239 (253)
313 TIGR02770 nickel_nikD nickel i 100.0 7.3E-34 1.6E-38 317.2 22.1 189 612-808 1-216 (230)
314 PRK13545 tagH teichoic acids e 100.0 1.5E-33 3.3E-38 335.8 25.9 205 593-808 20-233 (549)
315 cd03233 ABC_PDR_domain1 The pl 100.0 1E-33 2.2E-38 309.3 22.1 180 594-800 3-202 (202)
316 COG0411 LivG ABC-type branched 100.0 2.2E-34 4.7E-39 305.9 15.9 202 595-810 5-242 (250)
317 TIGR01184 ntrCD nitrate transp 100.0 7.1E-34 1.5E-38 317.0 20.8 182 613-805 1-202 (230)
318 cd03232 ABC_PDR_domain2 The pl 100.0 1E-33 2.2E-38 306.8 20.5 174 594-800 3-192 (192)
319 COG4598 HisP ABC-type histidin 100.0 2.9E-34 6.3E-39 286.5 14.7 204 593-810 5-244 (256)
320 PRK14246 phosphate ABC transpo 100.0 2E-33 4.3E-38 318.3 23.6 206 592-808 8-242 (257)
321 TIGR03608 L_ocin_972_ABC putat 100.0 8.6E-34 1.9E-38 311.5 19.5 181 597-791 1-206 (206)
322 COG1123 ATPase components of v 100.0 1.9E-33 4.2E-38 333.4 23.7 213 592-814 278-527 (539)
323 cd03229 ABC_Class3 This class 100.0 1.4E-33 3.1E-38 302.0 20.3 160 595-795 1-178 (178)
324 COG4525 TauB ABC-type taurine 100.0 8E-34 1.7E-38 287.6 17.0 195 596-802 5-219 (259)
325 PRK03695 vitamin B12-transport 100.0 2.6E-33 5.6E-38 316.0 23.0 193 596-807 2-222 (248)
326 cd03215 ABC_Carb_Monos_II This 100.0 1.3E-33 2.9E-38 303.3 19.7 160 594-796 4-182 (182)
327 cd03228 ABCC_MRP_Like The MRP 100.0 1.9E-33 4.2E-38 299.0 20.3 158 595-795 1-171 (171)
328 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.9E-33 4.1E-38 312.2 20.9 192 595-800 23-224 (224)
329 PRK10261 glutathione transport 100.0 2.3E-33 5.1E-38 355.2 24.6 206 593-808 312-554 (623)
330 cd03267 ABC_NatA_like Similar 100.0 2.3E-33 4.9E-38 314.3 21.0 180 610-800 34-236 (236)
331 CHL00131 ycf16 sulfate ABC tra 100.0 5.9E-33 1.3E-37 314.5 24.6 198 594-804 7-238 (252)
332 PRK13538 cytochrome c biogenes 100.0 3.4E-33 7.3E-38 306.0 21.4 183 595-791 2-202 (204)
333 COG4619 ABC-type uncharacteriz 100.0 6.9E-34 1.5E-38 281.4 13.8 179 609-797 15-213 (223)
334 COG0444 DppD ABC-type dipeptid 100.0 4E-33 8.7E-38 309.3 21.0 208 595-810 2-246 (316)
335 PRK13543 cytochrome c biogenes 100.0 7E-33 1.5E-37 305.7 22.6 187 593-793 10-212 (214)
336 COG4604 CeuD ABC-type enteroch 100.0 2.8E-34 6E-39 291.7 10.1 200 595-808 2-226 (252)
337 PRK13540 cytochrome c biogenes 100.0 5.5E-33 1.2E-37 303.3 21.1 182 595-790 2-198 (200)
338 cd03231 ABC_CcmA_heme_exporter 100.0 8.3E-33 1.8E-37 302.1 22.2 183 595-791 1-198 (201)
339 PRK09580 sufC cysteine desulfu 100.0 1.3E-32 2.9E-37 311.0 24.3 198 595-805 2-233 (248)
340 COG4161 ArtP ABC-type arginine 100.0 3.3E-33 7.1E-38 274.0 15.0 199 594-806 2-229 (242)
341 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.3E-32 2.7E-37 300.3 21.4 172 595-805 1-191 (200)
342 cd03214 ABC_Iron-Siderophores_ 100.0 5.2E-33 1.1E-37 298.2 18.0 178 596-800 1-180 (180)
343 PRK15134 microcin C ABC transp 100.0 7.6E-33 1.6E-37 345.9 22.3 205 593-808 274-516 (529)
344 PRK13549 xylose transporter AT 100.0 3.8E-33 8.2E-38 346.8 19.3 203 593-805 258-492 (506)
345 TIGR03269 met_CoM_red_A2 methy 100.0 1.2E-32 2.6E-37 343.7 23.4 209 593-807 278-517 (520)
346 cd03237 ABC_RNaseL_inhibitor_d 100.0 1.4E-32 3.1E-37 308.4 21.7 192 602-806 1-206 (246)
347 cd03216 ABC_Carb_Monos_I This 100.0 1.5E-32 3.4E-37 289.3 20.3 161 595-798 1-162 (163)
348 PRK13539 cytochrome c biogenes 100.0 2.5E-32 5.5E-37 299.7 22.6 184 595-793 3-200 (207)
349 TIGR03771 anch_rpt_ABC anchore 100.0 1.4E-32 3E-37 305.2 19.7 179 618-808 1-202 (223)
350 TIGR02324 CP_lyasePhnL phospho 100.0 2E-32 4.2E-37 304.7 20.6 187 595-791 2-222 (224)
351 TIGR00955 3a01204 The Eye Pigm 100.0 8.1E-33 1.8E-37 349.9 19.5 196 608-806 36-255 (617)
352 COG4148 ModC ABC-type molybdat 100.0 7.9E-33 1.7E-37 295.0 16.1 184 615-809 16-220 (352)
353 TIGR01257 rim_protein retinal- 100.0 2.3E-30 5.1E-35 348.7 43.9 206 591-808 1934-2160(2272)
354 PRK15064 ABC transporter ATP-b 100.0 5.5E-32 1.2E-36 338.3 25.2 200 593-808 318-526 (530)
355 PRK13541 cytochrome c biogenes 100.0 3.8E-32 8.3E-37 295.5 20.5 179 595-788 2-192 (195)
356 TIGR01189 ccmA heme ABC export 100.0 5.2E-32 1.1E-36 295.2 20.2 180 595-789 1-196 (198)
357 KOG0060 Long-chain acyl-CoA tr 100.0 3.4E-29 7.3E-34 290.7 44.3 452 331-793 135-641 (659)
358 PRK09700 D-allose transporter 100.0 3.3E-32 7.2E-37 338.9 20.8 198 594-802 265-493 (510)
359 TIGR01166 cbiO cobalt transpor 100.0 3.6E-32 7.7E-37 294.6 17.9 161 610-781 5-189 (190)
360 TIGR02633 xylG D-xylose ABC tr 100.0 3.3E-32 7.2E-37 338.3 19.1 200 594-803 257-488 (500)
361 PLN03211 ABC transporter G-25; 100.0 2.1E-31 4.5E-36 336.5 26.5 191 610-807 81-296 (659)
362 PRK11288 araG L-arabinose tran 100.0 6.2E-32 1.3E-36 335.5 20.2 196 594-806 257-484 (501)
363 COG4152 ABC-type uncharacteriz 100.0 5.9E-32 1.3E-36 283.7 16.2 205 594-808 2-220 (300)
364 PRK10762 D-ribose transporter 100.0 7.1E-32 1.5E-36 335.0 19.2 194 594-805 257-482 (501)
365 PRK15177 Vi polysaccharide exp 100.0 2E-31 4.4E-36 293.3 20.1 184 612-807 2-192 (213)
366 COG4608 AppF ABC-type oligopep 100.0 1.5E-31 3.3E-36 290.9 17.8 189 594-809 4-201 (268)
367 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 3.7E-31 8.1E-36 272.7 19.2 141 595-795 1-144 (144)
368 COG4172 ABC-type uncharacteriz 100.0 5.7E-31 1.2E-35 292.7 21.3 207 593-810 275-519 (534)
369 TIGR01187 potA spermidine/putr 100.0 2.2E-31 4.8E-36 311.1 19.0 171 628-809 1-192 (325)
370 PRK11819 putative ABC transpor 100.0 8.5E-31 1.8E-35 328.6 25.6 200 593-808 323-534 (556)
371 PRK15439 autoinducer 2 ABC tra 100.0 1.7E-31 3.7E-36 331.8 19.0 195 594-806 268-491 (510)
372 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 7.2E-31 1.6E-35 329.2 24.7 199 593-807 321-531 (552)
373 PRK10636 putative ABC transpor 100.0 7.4E-31 1.6E-35 332.5 24.6 199 592-806 310-516 (638)
374 KOG0927 Predicted transporter 100.0 1.3E-30 2.8E-35 300.4 23.6 207 592-808 73-310 (614)
375 PRK11147 ABC transporter ATPas 100.0 1.2E-30 2.6E-35 331.5 24.9 200 592-807 317-528 (635)
376 PLN03073 ABC transporter F fam 100.0 1.7E-30 3.7E-35 329.7 25.1 198 593-806 507-713 (718)
377 PRK13409 putative ATPase RIL; 100.0 1E-30 2.3E-35 326.3 22.5 193 593-801 339-536 (590)
378 PRK10535 macrolide transporter 100.0 1.8E-30 4E-35 329.9 23.9 202 594-806 4-231 (648)
379 cd03222 ABC_RNaseL_inhibitor T 100.0 1.1E-30 2.5E-35 276.5 16.9 153 598-805 4-161 (177)
380 COG1134 TagH ABC-type polysacc 100.0 3.1E-30 6.8E-35 274.8 20.0 188 609-807 39-236 (249)
381 PRK10938 putative molybdenum t 100.0 1.3E-30 2.8E-35 323.3 19.0 194 593-799 259-484 (490)
382 PRK10982 galactose/methyl gala 100.0 1.8E-30 3.9E-35 321.8 19.6 201 593-804 249-477 (491)
383 cd03236 ABC_RNaseL_inhibitor_d 100.0 2.3E-30 5.1E-35 291.6 17.6 186 599-799 5-219 (255)
384 TIGR00956 3a01205 Pleiotropic 100.0 4.6E-30 9.9E-35 347.8 22.9 204 594-804 759-990 (1394)
385 cd03238 ABC_UvrA The excision 100.0 5.8E-30 1.3E-34 270.9 18.2 151 609-797 7-167 (176)
386 COG1101 PhnK ABC-type uncharac 100.0 6.1E-30 1.3E-34 264.1 14.7 189 609-799 18-230 (263)
387 COG1119 ModF ABC-type molybden 100.0 4.6E-30 1E-34 272.8 12.8 197 591-801 28-256 (257)
388 cd00267 ABC_ATPase ABC (ATP-bi 100.0 1.5E-28 3.2E-33 257.9 19.0 142 597-795 2-157 (157)
389 COG4167 SapF ABC-type antimicr 100.0 5.6E-29 1.2E-33 249.3 14.4 188 610-809 26-241 (267)
390 PLN03140 ABC transporter G fam 100.0 2E-28 4.4E-33 330.1 23.7 204 594-804 867-1107(1470)
391 COG4136 ABC-type uncharacteriz 100.0 1.2E-28 2.6E-33 239.5 15.2 183 595-791 3-207 (213)
392 cd03289 ABCC_CFTR2 The CFTR su 100.0 6E-29 1.3E-33 282.8 14.6 142 1214-1357 1-142 (275)
393 COG4615 PvdE ABC-type sideroph 100.0 1.3E-25 2.9E-30 249.0 40.2 375 941-1333 54-435 (546)
394 COG0488 Uup ATPase components 100.0 1.9E-27 4.1E-32 289.0 26.0 202 591-808 318-526 (530)
395 COG4674 Uncharacterized ABC-ty 100.0 7.8E-28 1.7E-32 244.5 15.1 201 593-808 4-236 (249)
396 COG4586 ABC-type uncharacteriz 99.9 9.6E-28 2.1E-32 256.2 13.1 188 609-808 36-247 (325)
397 KOG0062 ATPase component of AB 99.9 5.5E-27 1.2E-31 269.2 19.2 193 592-807 78-285 (582)
398 KOG0065 Pleiotropic drug resis 99.9 1.2E-25 2.6E-30 283.5 32.5 191 610-807 128-351 (1391)
399 cd03270 ABC_UvrA_I The excisio 99.9 7.6E-27 1.6E-31 259.3 18.2 180 609-800 7-226 (226)
400 KOG0061 Transporter, ABC super 99.9 9.6E-27 2.1E-31 291.2 20.5 207 593-806 24-259 (613)
401 COG0396 sufC Cysteine desulfur 99.9 8.3E-26 1.8E-30 237.3 22.2 200 595-806 4-232 (251)
402 COG4107 PhnK ABC-type phosphon 99.9 3.5E-26 7.6E-31 227.5 14.9 217 594-816 6-251 (258)
403 cd03271 ABC_UvrA_II The excisi 99.9 1.1E-25 2.4E-30 252.2 17.1 182 611-802 9-261 (261)
404 PRK00635 excinuclease ABC subu 99.9 8.8E-25 1.9E-29 290.7 28.0 94 713-806 803-905 (1809)
405 PRK14257 phosphate ABC transpo 99.9 4.9E-26 1.1E-30 265.6 13.5 170 1179-1356 35-228 (329)
406 COG4133 CcmA ABC-type transpor 99.9 1.4E-25 3.1E-30 228.3 14.5 164 609-784 14-195 (209)
407 PF00005 ABC_tran: ABC transpo 99.9 1.1E-25 2.4E-30 230.5 11.9 123 613-748 1-137 (137)
408 KOG0064 Peroxisomal long-chain 99.9 5.1E-21 1.1E-25 219.3 47.4 451 325-791 164-681 (728)
409 KOG0059 Lipid exporter ABCA1 a 99.9 1.2E-24 2.7E-29 283.8 18.3 203 593-808 563-788 (885)
410 COG4778 PhnL ABC-type phosphon 99.9 5.2E-25 1.1E-29 218.8 10.0 188 595-792 5-226 (235)
411 cd03278 ABC_SMC_barmotin Barmo 99.9 1.8E-24 4E-29 234.6 13.2 153 614-792 14-189 (197)
412 KOG0927 Predicted transporter 99.9 3.3E-24 7.2E-29 247.8 11.4 200 592-806 387-595 (614)
413 COG4178 ABC-type uncharacteriz 99.9 7.8E-21 1.7E-25 229.2 40.9 386 937-1340 88-508 (604)
414 cd03244 ABCC_MRP_domain2 Domai 99.9 1E-22 2.2E-27 226.3 14.9 141 1214-1355 1-141 (221)
415 cd03279 ABC_sbcCD SbcCD and ot 99.9 1.1E-22 2.5E-27 224.1 15.1 180 594-796 5-211 (213)
416 cd03240 ABC_Rad50 The catalyti 99.9 1.5E-22 3.3E-27 221.0 14.8 155 615-793 15-197 (204)
417 cd03288 ABCC_SUR2 The SUR doma 99.9 1.8E-22 4E-27 229.2 15.1 143 1212-1355 16-158 (257)
418 COG1129 MglA ABC-type sugar tr 99.9 4.8E-22 1E-26 235.3 17.6 182 612-799 274-482 (500)
419 KOG0066 eIF2-interacting prote 99.9 9.2E-22 2E-26 219.5 18.1 200 594-805 264-497 (807)
420 cd03272 ABC_SMC3_euk Eukaryoti 99.9 2.6E-22 5.5E-27 226.4 14.0 176 611-792 16-234 (243)
421 PRK00349 uvrA excinuclease ABC 99.9 1.4E-21 3.1E-26 251.5 20.1 98 713-810 824-930 (943)
422 cd03273 ABC_SMC2_euk Eukaryoti 99.9 8E-22 1.7E-26 223.1 13.1 169 623-792 25-242 (251)
423 cd03275 ABC_SMC1_euk Eukaryoti 99.9 9.8E-22 2.1E-26 221.7 11.1 174 618-792 18-232 (247)
424 cd03369 ABCC_NFT1 Domain 2 of 99.9 1.8E-21 3.8E-26 214.0 12.6 118 1210-1327 1-118 (207)
425 COG2884 FtsE Predicted ATPase 99.9 9.5E-22 2.1E-26 200.3 8.1 127 1216-1343 2-139 (223)
426 COG4138 BtuD ABC-type cobalami 99.8 3.8E-22 8.3E-27 199.2 4.5 184 612-808 14-222 (248)
427 TIGR00630 uvra excinuclease AB 99.8 1.4E-20 3E-25 242.0 18.8 93 713-805 822-923 (924)
428 KOG0065 Pleiotropic drug resis 99.8 1.9E-21 4.2E-26 245.9 10.4 190 608-804 802-1018(1391)
429 KOG0066 eIF2-interacting prote 99.8 1.1E-20 2.4E-25 210.9 15.0 199 593-806 585-790 (807)
430 cd03252 ABCC_Hemolysin The ABC 99.8 8.4E-21 1.8E-25 213.2 13.8 136 1216-1351 1-137 (237)
431 KOG0062 ATPase component of AB 99.8 9.3E-21 2E-25 218.4 14.1 200 592-805 360-567 (582)
432 cd03254 ABCC_Glucan_exporter_l 99.8 1.2E-20 2.6E-25 210.8 13.5 137 1214-1351 1-138 (229)
433 cd03250 ABCC_MRP_domain1 Domai 99.8 1.2E-20 2.6E-25 206.9 12.9 126 1216-1355 1-129 (204)
434 COG1245 Predicted ATPase, RNas 99.8 2.9E-20 6.3E-25 210.6 14.9 179 599-792 340-530 (591)
435 COG1126 GlnQ ABC-type polar am 99.8 1.3E-20 2.8E-25 196.7 11.1 127 1215-1343 2-138 (240)
436 cd03245 ABCC_bacteriocin_expor 99.8 3.1E-20 6.6E-25 206.2 14.8 138 1214-1351 1-139 (220)
437 COG1125 OpuBA ABC-type proline 99.8 8.8E-21 1.9E-25 201.3 9.5 125 1216-1342 2-136 (309)
438 cd03248 ABCC_TAP TAP, the Tran 99.8 2.6E-20 5.6E-25 207.7 13.6 140 1212-1351 8-149 (226)
439 cd03274 ABC_SMC4_euk Eukaryoti 99.8 2E-21 4.3E-26 213.2 4.1 180 595-793 6-204 (212)
440 cd03253 ABCC_ATM1_transporter 99.8 3.3E-20 7.1E-25 208.3 13.9 135 1216-1351 1-136 (236)
441 PF00664 ABC_membrane: ABC tra 99.8 9.1E-18 2E-22 190.2 33.9 222 946-1167 52-275 (275)
442 cd03251 ABCC_MsbA MsbA is an e 99.8 3.9E-20 8.6E-25 207.4 13.4 136 1216-1351 1-137 (234)
443 cd03276 ABC_SMC6_euk Eukaryoti 99.8 7.5E-20 1.6E-24 198.8 14.5 160 612-795 11-192 (198)
444 COG1135 AbcC ABC-type metal io 99.8 4.1E-20 9E-25 202.4 12.3 128 1216-1343 2-143 (339)
445 cd03290 ABCC_SUR1_N The SUR do 99.8 6.7E-20 1.5E-24 203.1 13.1 138 1216-1355 1-142 (218)
446 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 7.2E-20 1.6E-24 205.8 13.3 136 1216-1351 1-138 (238)
447 cd03239 ABC_SMC_head The struc 99.8 7.3E-20 1.6E-24 195.2 11.5 154 614-793 13-172 (178)
448 COG3638 ABC-type phosphate/pho 99.8 7.3E-20 1.6E-24 193.5 11.1 121 1215-1336 3-142 (258)
449 TIGR00960 3a0501s02 Type II (G 99.8 8.3E-20 1.8E-24 202.1 11.1 127 1216-1342 2-139 (216)
450 KOG2355 Predicted ABC-type tra 99.8 5.7E-19 1.2E-23 181.0 15.9 200 591-806 10-236 (291)
451 COG1117 PstB ABC-type phosphat 99.8 8E-20 1.7E-24 189.7 9.7 122 1214-1337 6-141 (253)
452 COG3845 ABC-type uncharacteriz 99.8 1.2E-18 2.6E-23 201.9 19.5 205 592-804 255-489 (501)
453 COG3839 MalK ABC-type sugar tr 99.8 2.9E-19 6.2E-24 204.2 12.8 126 1215-1344 3-136 (338)
454 PRK13650 cbiO cobalt transport 99.8 2.4E-19 5.1E-24 205.9 11.9 128 1215-1342 4-141 (279)
455 PRK13647 cbiO cobalt transport 99.8 2.1E-19 4.6E-24 205.8 11.3 127 1215-1342 4-139 (274)
456 KOG0060 Long-chain acyl-CoA tr 99.8 1E-16 2.2E-21 187.6 33.4 259 1079-1346 270-563 (659)
457 COG1120 FepC ABC-type cobalami 99.8 3E-19 6.5E-24 196.7 11.8 121 1215-1337 2-134 (258)
458 COG1127 Ttg2A ABC-type transpo 99.8 2.9E-19 6.2E-24 189.6 10.9 124 1215-1340 8-144 (263)
459 PRK13635 cbiO cobalt transport 99.8 3.7E-19 8E-24 204.2 11.9 129 1215-1343 5-142 (279)
460 PRK14250 phosphate ABC transpo 99.8 6.2E-19 1.3E-23 198.4 13.0 123 1215-1339 3-129 (241)
461 TIGR02314 ABC_MetN D-methionin 99.8 4.7E-19 1E-23 207.3 12.2 127 1216-1342 2-141 (343)
462 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 4E-19 8.6E-24 197.0 10.6 125 1216-1340 1-139 (218)
463 PRK13632 cbiO cobalt transport 99.8 7.9E-19 1.7E-23 201.0 13.2 128 1215-1342 7-143 (271)
464 PRK11629 lolD lipoprotein tran 99.8 4.3E-19 9.3E-24 198.8 10.7 126 1215-1340 5-144 (233)
465 PRK13631 cbiO cobalt transport 99.8 7.6E-19 1.7E-23 204.7 13.1 124 1214-1337 20-172 (320)
466 cd03226 ABC_cobalt_CbiO_domain 99.8 4.6E-19 9.9E-24 194.6 10.6 122 1217-1342 1-127 (205)
467 cd03260 ABC_PstB_phosphate_tra 99.8 5E-19 1.1E-23 197.5 10.9 121 1216-1338 1-136 (227)
468 PF00664 ABC_membrane: ABC tra 99.8 9.5E-16 2.1E-20 173.6 37.9 269 280-549 2-275 (275)
469 PRK14269 phosphate ABC transpo 99.8 4.8E-19 1.1E-23 200.0 10.7 120 1215-1336 2-133 (246)
470 COG4619 ABC-type uncharacteriz 99.8 3.3E-19 7.1E-24 177.6 8.0 114 1223-1336 9-127 (223)
471 cd03261 ABC_Org_Solvent_Resist 99.8 5.7E-19 1.2E-23 198.1 11.1 124 1216-1341 1-136 (235)
472 cd03292 ABC_FtsE_transporter F 99.8 4.6E-19 1E-23 195.9 10.1 126 1216-1342 1-137 (214)
473 PRK13637 cbiO cobalt transport 99.8 6.2E-19 1.4E-23 203.2 11.6 125 1215-1339 2-142 (287)
474 cd03263 ABC_subfamily_A The AB 99.8 6.1E-19 1.3E-23 195.8 11.2 123 1216-1339 1-131 (220)
475 cd03266 ABC_NatA_sodium_export 99.8 7E-19 1.5E-23 195.1 11.5 124 1216-1340 2-135 (218)
476 TIGR02673 FtsE cell division A 99.8 5.1E-19 1.1E-23 195.6 10.3 126 1216-1342 2-138 (214)
477 COG1122 CbiO ABC-type cobalt t 99.8 1E-18 2.2E-23 192.6 12.5 127 1215-1342 3-139 (235)
478 PRK13646 cbiO cobalt transport 99.8 9.4E-19 2E-23 201.7 12.2 126 1215-1340 2-144 (286)
479 cd03225 ABC_cobalt_CbiO_domain 99.8 7.3E-19 1.6E-23 193.9 10.7 125 1217-1341 1-134 (211)
480 PRK13640 cbiO cobalt transport 99.8 1.5E-18 3.4E-23 199.5 13.6 129 1214-1342 4-144 (282)
481 PRK13652 cbiO cobalt transport 99.8 1.4E-18 3E-23 199.5 12.6 127 1215-1342 3-138 (277)
482 cd03246 ABCC_Protease_Secretio 99.8 1.2E-18 2.6E-23 185.9 11.0 96 1216-1311 1-96 (173)
483 COG3842 PotA ABC-type spermidi 99.8 1.2E-18 2.5E-23 200.2 11.5 125 1214-1342 4-137 (352)
484 cd03256 ABC_PhnC_transporter A 99.8 1.2E-18 2.7E-23 196.2 11.5 124 1216-1340 1-143 (241)
485 PRK10908 cell division protein 99.8 2.1E-18 4.6E-23 191.7 13.1 124 1216-1340 2-136 (222)
486 COG1136 SalX ABC-type antimicr 99.8 2.4E-18 5.3E-23 185.9 13.0 127 1216-1342 2-143 (226)
487 cd03291 ABCC_CFTR1 The CFTR su 99.8 4.1E-18 8.9E-23 194.9 15.6 122 1213-1351 37-158 (282)
488 cd03258 ABC_MetN_methionine_tr 99.8 1.1E-18 2.5E-23 195.4 10.7 127 1216-1342 2-141 (233)
489 cd03268 ABC_BcrA_bacitracin_re 99.8 1E-18 2.3E-23 192.2 10.2 121 1216-1340 1-125 (208)
490 PRK10584 putative ABC transpor 99.8 2E-18 4.4E-23 192.7 12.5 128 1215-1342 6-147 (228)
491 PRK13643 cbiO cobalt transport 99.8 1.6E-18 3.4E-23 200.0 11.6 125 1216-1340 2-143 (288)
492 TIGR02315 ABC_phnC phosphonate 99.8 1.8E-18 3.9E-23 195.1 11.9 124 1216-1340 2-144 (243)
493 TIGR02211 LolD_lipo_ex lipopro 99.8 2.2E-18 4.8E-23 191.5 12.4 126 1216-1341 2-141 (221)
494 cd03259 ABC_Carb_Solutes_like 99.8 1.3E-18 2.8E-23 192.2 10.1 122 1216-1341 1-130 (213)
495 PRK13636 cbiO cobalt transport 99.8 2E-18 4.2E-23 198.8 11.9 125 1215-1340 5-140 (283)
496 PRK10575 iron-hydroxamate tran 99.8 1.8E-18 3.9E-23 197.5 11.4 126 1215-1342 11-148 (265)
497 cd03262 ABC_HisP_GlnQ_permease 99.8 1.5E-18 3.3E-23 191.7 10.4 124 1216-1341 1-135 (213)
498 PRK10744 pstB phosphate transp 99.8 2.1E-18 4.6E-23 196.4 11.9 120 1213-1334 11-145 (260)
499 cd03247 ABCC_cytochrome_bd The 99.8 2E-18 4.3E-23 185.1 10.8 95 1216-1311 1-95 (178)
500 PRK13642 cbiO cobalt transport 99.8 2.6E-18 5.7E-23 197.2 12.5 128 1215-1342 4-141 (277)
No 1
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.1e-246 Score=2326.47 Aligned_cols=1149 Identities=44% Similarity=0.734 Sum_probs=1062.4
Q ss_pred CCCCccCCh--hHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHH
Q 000674 197 QTELGKAGL--LRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNV 274 (1358)
Q Consensus 197 ~~p~~~a~~--~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~ 274 (1358)
++|.+.++. +|++||||++|++++|||++|+.+|+|+++++|+++.+.++|++.|+++.++. ++.|+++++++++
T Consensus 122 ~~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~~---~~~psl~~al~~~ 198 (1381)
T KOG0054|consen 122 PNPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELGRS---GKKPSLLRALLRT 198 (1381)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhccc---cCCcHHHHHHHHH
Confidence 345555555 99999999999999999999999999999999999999999999999876432 2568899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALM 354 (1358)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~ 354 (1358)
||+++++.+++..+.+...|++|++|+.+++|.++++.+.+.||.++++++++.++++++.+||+|..+++|+|+|++++
T Consensus 199 f~~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~ 278 (1381)
T KOG0054|consen 199 FGRTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALI 278 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHH
Confidence 99999999999999999999999999999999988777788999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000674 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLN 434 (1358)
Q Consensus 355 ~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~~~~~l~ 434 (1358)
++||+|+|++++.+++++++|+|+|+||+|++|+++++.++|.+|++|+|+++++++||+++|+++++|++++++++|+|
T Consensus 279 ~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n 358 (1381)
T KOG0054|consen 279 SAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLN 358 (1381)
T ss_pred HHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 435 VPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTII 514 (1358)
Q Consensus 435 ~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~p~~v 514 (1358)
.+++++++++|++.|+.+|+|+++|||+|+|||+|||||||++|.++|+++|++|++++||..+..+++.++++++|+++
T Consensus 359 ~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv 438 (1381)
T KOG0054|consen 359 SFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLV 438 (1381)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccchhcccccCCCCc
Q 000674 515 SSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRS 594 (1358)
Q Consensus 515 ~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~ 594 (1358)
++++|++|++..++.+||++||+++++||+|+.|+.++|+.++.++|++||++|+++||..+|.+++..++.+....+.+
T Consensus 439 ~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~ 518 (1381)
T KOG0054|consen 439 SVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENA 518 (1381)
T ss_pred HHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCce
Confidence 99999999953348899999999999999999999999999999999999999999999999998766654445556678
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCCCCCCCCH
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSI 674 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g~i~yv~Q~~~~~~~tv 674 (1358)
|+++|++|+|+++.+.+.|+||||+|++|+++||||++||||||||++|+||+++.+|++.++|++|||||+|||+|+||
T Consensus 519 i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTv 598 (1381)
T KOG0054|consen 519 IEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTV 598 (1381)
T ss_pred EEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcH
Confidence 99999999999865667999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Q 000674 675 RDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754 (1358)
Q Consensus 675 ~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~ 754 (1358)
||||+||.+||++||++++++|+|++|++.||.||+|+|||||.||||||||||+||||+|+|+||||||||+||||+|+
T Consensus 599 reNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahv 678 (1381)
T KOG0054|consen 599 RENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHV 678 (1381)
T ss_pred HHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHHhcCchHHHHHHhhhhhcccCCCCCCCCC
Q 000674 755 AATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQ 834 (1358)
Q Consensus 755 ~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (1358)
++|||++|+++.+++||+|+|||+++++++||.|++|+||+|.+.|+|+|+++.+..+.++..+.........+. ..
T Consensus 679 g~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~~~~~~~~~~~~---~~ 755 (1381)
T KOG0054|consen 679 GKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHEEESEQEEEASE---KD 755 (1381)
T ss_pred hHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhccchhhcccccc---cc
Confidence 999999999999999999999999999999999999999999999999999998888888743322111110000 00
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCccc-cccccccCCCchHHHHhhCcccHHHHHHHHHHccchhHHHHHHHHHHHHH
Q 000674 835 GGAEKVEKGRTARPEEPNGIYPRKESSEG-EISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFV 913 (1358)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~ 913 (1358)
.+..+ .....+.......+...+. ....+...++.++|+++.|.|+|++|+.|+++.+|+..+++.+++.+..+
T Consensus 756 --~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~ 830 (1381)
T KOG0054|consen 756 --LESGE---SSRESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQ 830 (1381)
T ss_pred --ccccc---cccchhhhhhhhhcccccccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 00000 0000000000000000000 00111134566788899999999999999998778877777788888899
Q ss_pred HHHHHHHHHHHhhhcCCC------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccc
Q 000674 914 GLQAAATYWLAYAIQIPK------ITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFD 987 (1358)
Q Consensus 914 ~~~~~~~~wl~~~~~~~~------~~~~~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd 987 (1358)
++..+.+||+++|++... .+..+|+++|+++++++.++.+++++.+..++.++|++||++|+++++|+||+|||
T Consensus 831 ~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFd 910 (1381)
T KOG0054|consen 831 VLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFD 910 (1381)
T ss_pred HHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcC
Confidence 999999999999997642 34668999999999999999999999999999999999999999999999999999
Q ss_pred ccChhhHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000674 988 STPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRING 1067 (1358)
Q Consensus 988 ~~p~G~IlnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~i~v~~~~~~~l~~~~l~~~~~~~~~~~~y~~~sr~l~rl~~ 1067 (1358)
+||+|||+||||+|++.+|..+|..+..++.++++++++++++++++|+++++++|+.++++++++||.+++||+||+++
T Consensus 911 tTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLes 990 (1381)
T KOG0054|consen 911 TTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLES 990 (1381)
T ss_pred CCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 000674 1068 TTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGY 1147 (1358)
Q Consensus 1068 ~~~spl~s~~~Etl~G~~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~l~~~g~ 1147 (1358)
.+|||+++||+||++|+.|||||+.+++|.+++.+++|.+.+++|....++||+++|+|++++++++++++++++...+.
T Consensus 991 itRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~ 1070 (1381)
T KOG0054|consen 991 ITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGL 1070 (1381)
T ss_pred cccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888766655
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCC
Q 000674 1148 VAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRP 1227 (1358)
Q Consensus 1148 is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~ 1227 (1358)
.++|.+|++++|++++++.++|++|+.+++|++|+|||||.||.++|+|+|+..+..+||++||.+|+|+|+|+++||||
T Consensus 1071 ~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp 1150 (1381)
T KOG0054|consen 1071 ISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRP 1150 (1381)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCC
Confidence 88999999999999999999999999999999999999999999999997776666669999999999999999999999
Q ss_pred CCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCceecccccccccch
Q 000674 1228 NAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSV 1307 (1358)
Q Consensus 1228 ~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~IsiVpQdp~LF~GTI 1307 (1358)
+.|+|||||||+|+||||||||||||||||||+++|||+.||++|+|.|||+||++++||+||++|+||||||+||+||+
T Consensus 1151 ~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTv 1230 (1381)
T KOG0054|consen 1151 NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTV 1230 (1381)
T ss_pred CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCccccccccCCcCCCCCC
Q 000674 1308 RTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSEQITYDYGWSSS 1357 (1358)
Q Consensus 1308 R~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~Gldt~v~e~g~~n~s~~ 1357 (1358)
|+||||+++|||+|||+|||+|||+++|+++|+|||++|+|||+ |||+.
T Consensus 1231 R~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~-N~SvG 1279 (1381)
T KOG0054|consen 1231 RFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGE-NFSVG 1279 (1381)
T ss_pred ccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCc-cCChH
Confidence 99999999999999999999999999999999999999999999 99975
No 2
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.5e-190 Score=1919.78 Aligned_cols=1316 Identities=30% Similarity=0.486 Sum_probs=1078.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhhhhccc-CCCCcccc-hhHHHHHHHHHHHHHHHHHHHHHH---HhhhccCCc-
Q 000674 22 GSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKN-HNYGRIRR-ECVSIVVSACCAVVGIAYLGYCLW---NLIAKNDSS- 95 (1358)
Q Consensus 22 ~~~c~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~- 95 (1358)
.||||++++++|+|++|+|+++|.+++.. ++. +..++.++ .+.+..+.++..+.....++..+. ....+....
T Consensus 29 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (1622)
T PLN03130 29 YTPCATDSLVINISHLVLLGLCLYRIWLI-KKDHKVQRFCLRSKWYNYFLALLAAYCTAEPLFRLVMGISVLNLDGQTSL 107 (1622)
T ss_pred CCccHHhhHHHHHHHHHHHHHHHHHHHHh-ccccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 39999999999999999999999888743 331 22222222 222222222222222211211111 111111111
Q ss_pred ch--hHHHHHHHHHHHHHHHHHHH---H--hccchhHHHHHHHHHH---HHHHHHHHHHHHHhhcccccccchhhhHHHH
Q 000674 96 MS--WLVSTVRGLIWVSLAISLLV---K--RSKWIRMLITLWWMSF---SLLVLALNIEILARTYTINVVYILPLPVNLL 165 (1358)
Q Consensus 96 ~~--~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (1358)
.+ ........++|+.+.+++.. + +.+...+.+++||++. +++.............. ...++..+.+.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 186 (1622)
T PLN03130 108 PPFEIVSLIVEALTWCSMLVMIGVETKIYIREFRWYVRFAVIYVLVGDAVMLNLVLSVKEYYSSFV-LYLYISEVAAQVL 186 (1622)
T ss_pred ccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeehhHHHhhHHHHHHHHHHHHHHHhccc-cceehhHHHHHHH
Confidence 11 11122334555533322222 1 2233446678899887 33322222222221110 1224444444443
Q ss_pred HHHHH-hhcc-cCCCCCCC------CCCCCCcccccccCCCCCccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCcc
Q 000674 166 LLFSA-FRNF-SHFTSPNR------EDKSLSEPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPE 237 (1358)
Q Consensus 166 ~~~~~-~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~p~~~a~~~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l~~~ 237 (1358)
+.+.. +... .+...+.. ..+..++|...+.+++||++||++||++|||++|++++|||++|+.+|||+++++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~ 266 (1622)
T PLN03130 187 FGILLLVYFPNLDPYPGYTPIGSESVDDYEYEELPGGEQICPERHANIFSRIFFGWMTPLMQLGYKRPLTEKDVWKLDTW 266 (1622)
T ss_pred HHHHHHHHHhcCCCCcccccccccccccccccCCcccCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChh
Confidence 22222 1111 11111110 1123345555667889999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHH
Q 000674 238 DEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEG 317 (1358)
Q Consensus 238 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g 317 (1358)
|+++.+.++|++.|+++.+ +++++++++++++|++.++..++++++.+++.+++|++++.+++++.+++ ..+.|
T Consensus 267 ~~~~~~~~~~~~~w~~~~~-----~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~-~~~~~ 340 (1622)
T PLN03130 267 DQTETLYRSFQKCWDEELK-----KPKPWLLRALNNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGE-PAWIG 340 (1622)
T ss_pred hhHHHHHHHHHHHHHHHhc-----cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cchHH
Confidence 9999999999999987642 13478999999999999999999999999999999999999999986543 23567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHHHHH
Q 000674 318 LSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHL 397 (1358)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~~~~ 397 (1358)
+.++++++++.++.+++.++|++...++++++|+++...+|+|.++++....++.++|+++|+|++|++++.+++..+|.
T Consensus 341 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~l~~ 420 (1622)
T PLN03130 341 YIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQLHT 420 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777888888899999999999999999999999998888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHH
Q 000674 398 TWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEK 477 (1358)
Q Consensus 398 ~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~~~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~ 477 (1358)
+|..|+++++++++||..+|+++++|++++++++|++..+++++++.++++++.+|+|++.++|+|+|||+||+|+||+.
T Consensus 421 l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~ 500 (1622)
T PLN03130 421 LWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENS 500 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 478 FKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALS 557 (1358)
Q Consensus 478 f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~ 557 (1358)
|.+++++.|++|++..++..+..++..+++...|.++++++|++|.+.+ +.+|++.+|+++++++.++.|+..+|..+.
T Consensus 501 ~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~~-g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~ 579 (1622)
T PLN03130 501 FQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLG-GDLTPARAFTSLSLFAVLRFPLFMLPNLIT 579 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888888878888888888899888776 789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCccchhcccccCCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHH
Q 000674 558 IMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKS 637 (1358)
Q Consensus 558 ~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKS 637 (1358)
.+.++++|++||++||..+|..+... .+.......|+++|++|+|+++.++++|+|+||++++||+++|+||+|||||
T Consensus 580 ~~~~a~~s~~RI~~~L~~~e~~~~~~--~~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKS 657 (1622)
T PLN03130 580 QAVNANVSLKRLEELLLAEERVLLPN--PPLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKT 657 (1622)
T ss_pred HHHHHHHHHHHHHHHHcCcccccccC--CcccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHH
Confidence 99999999999999998766532111 1111123479999999999865456799999999999999999999999999
Q ss_pred HHHHHHhCCccCCC-cEEEEcCeEEEEeCCCCCCCCCHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCC
Q 000674 638 SLLYAILGEIPKIS-GTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1358)
Q Consensus 638 tLl~~ilG~~~~~~-G~i~~~g~i~yv~Q~~~~~~~tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~ 716 (1358)
||+++|+|+++|.+ |+|.++++||||+|+||++++||||||+||.++++++|++++++|+|++|++.+|+||+|+|||+
T Consensus 658 TLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~ 737 (1622)
T PLN03130 658 SLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGER 737 (1622)
T ss_pred HHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCC
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeE
Q 000674 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1358)
Q Consensus 717 g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i 796 (1358)
|.+|||||||||+||||+|++||||||||||||||++++++++++++.+.+++||+|+|||+++.++.||+|++|++|+|
T Consensus 738 G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i 817 (1622)
T PLN03130 738 GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMI 817 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999999999877789999999999999999999999999999
Q ss_pred EEecChHHHHhcCchHHHHHHhhhhhcccCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCccccccccccCCCchH
Q 000674 797 TQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTED 876 (1358)
Q Consensus 797 ~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (1358)
+++|+++|++++++.+.++...+....+..+ . ......++.+.. ....... ...+ +.....+...+....+.++
T Consensus 818 ~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~-~--~~~~~~~~~~~~-~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~ 891 (1622)
T PLN03130 818 KEEGTYEELSNNGPLFQKLMENAGKMEEYVE-E--NGEEEDDQTSSK-PVANGNA-NNLK-KDSSSKKKSKEGKSVLIKQ 891 (1622)
T ss_pred EEeCCHHHHHhcchhHHHHHHhccccccccc-c--cccccccccccc-ccccccc-cccc-ccccccccccccchhhhhH
Confidence 9999999999888778777654321110000 0 000000000000 0000000 0000 0000000000011234567
Q ss_pred HHHhhCcccHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC---CchhHHHHHHHHHHHHHHHHHH
Q 000674 877 EEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPK---ITSGILIGVYAGVSTASAVFVY 953 (1358)
Q Consensus 877 e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~---~~~~~~l~iy~~l~~~~~i~~~ 953 (1358)
|+++.|.++|++|+.|+++.++.+.+++++++.+...++.++.++|++.|.+... .....++++|++++++..++.+
T Consensus 892 e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~i~~~l~~~~~i~~~ 971 (1622)
T PLN03130 892 EERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVTL 971 (1622)
T ss_pred HHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999998666655555555666667778889999999986421 2245678889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccChhhHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 954 FRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFV 1033 (1358)
Q Consensus 954 ~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~i~v~~~~ 1033 (1358)
++.++....+.++++++|++++++++++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++++++++++
T Consensus 972 ~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~ 1051 (1622)
T PLN03130 972 LNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIV 1051 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHH
Q 000674 1034 TWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFH 1113 (1358)
Q Consensus 1034 ~~~l~~~~l~~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~G~~tIRAf~~e~~f~~~~~~~~d~~~~~~~~ 1113 (1358)
+|..+++++|+.+++++++++|.+++|+++|++..+++|+++|++|+++|++|||||+.+++|.+++.+..|.+.+..+.
T Consensus 1052 ~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~ 1131 (1622)
T PLN03130 1052 STISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLV 1131 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877788888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000674 1114 TNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYV-----APGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIK 1188 (1358)
Q Consensus 1114 ~~~~~~wl~~~l~~l~~~~~~~~~~~~~l~~~g~i-----s~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~ 1188 (1358)
....++|++.++++++.+++++.+.+.+. ..+.. .++.+|++++|++.+..++.++.+.++++|+.++|+||+.
T Consensus 1132 ~~~~~~wl~~~l~~~~~~~i~~~~~~~v~-~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~ 1210 (1622)
T PLN03130 1132 NMSSNRWLAIRLETLGGLMIWLTASFAVM-QNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVG 1210 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887766555544332 22221 2688999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccC
Q 000674 1189 QFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE 1268 (1358)
Q Consensus 1189 e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e 1268 (1358)
+|++.|+|++...++..+++.||.+|.|+|+||+|+|+++.++|||||||+|+||||||||||||||||||+++|+|+||
T Consensus 1211 e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~ 1290 (1622)
T PLN03130 1211 TYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE 1290 (1622)
T ss_pred HHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 99999988764334445667899999999999999999887789999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCEeCCCCChHHHhhcCceecccccccccchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCcccccccc
Q 000674 1269 PAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSEQI 1348 (1358)
Q Consensus 1269 ~~~G~I~IDGvDI~~i~l~~LRs~IsiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~Gldt~v~e 1348 (1358)
|++|+|+|||+||+++++++||++|++|||||+||+||||+||||+++++|+|||+||++||++|||+++|+||||+|+|
T Consensus 1291 p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge 1370 (1622)
T PLN03130 1291 LERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSE 1370 (1622)
T ss_pred CCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCC
Q 000674 1349 TYDYGWSS 1356 (1358)
Q Consensus 1349 ~g~~n~s~ 1356 (1358)
+|. |+|.
T Consensus 1371 ~G~-nLSg 1377 (1622)
T PLN03130 1371 AGE-NFSV 1377 (1622)
T ss_pred CCC-CCCH
Confidence 999 9985
No 3
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=8.8e-186 Score=1876.26 Aligned_cols=1143 Identities=31% Similarity=0.541 Sum_probs=1003.4
Q ss_pred ccCCCCCccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHH
Q 000674 194 EKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITN 273 (1358)
Q Consensus 194 ~~~~~p~~~a~~~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~ 273 (1358)
+.+++||+++|++||+||||++|++++||+++|+.+|||+|+++|+++.++++|++.|+++.+ .+++++++++++
T Consensus 223 ~~~~~pe~~a~~~s~~~f~w~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~-----~~~~~l~~~l~~ 297 (1495)
T PLN03232 223 GENICPERYASIFSRIYFSWMTPLMQLGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEESR-----RPKPWLLRALNN 297 (1495)
T ss_pred cCCCCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHhhc-----cCCchHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999987542 135789999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 274 VYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSAL 353 (1358)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l 353 (1358)
+|++.++..++++++.+++.+++|++++.+++++++++ ..+.|+.++++++++.++.+++.++|++...+++.++|+.+
T Consensus 298 ~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l 376 (1495)
T PLN03232 298 SLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGD-PAWVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTL 376 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999986543 23468888888888888888888899999999999999999
Q ss_pred HHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000674 354 MVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLL 433 (1358)
Q Consensus 354 ~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~~~~~l 433 (1358)
...+|+|.++++....++.++|+++|+|++|++++.++..++|.+|..|++++++++++|+.+|+++++|++++++++|+
T Consensus 377 ~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~pl 456 (1495)
T PLN03232 377 VAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPL 456 (1495)
T ss_pred HHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999998888889999999999999999999999999999999999999999999999999999998899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 434 NVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTI 513 (1358)
Q Consensus 434 ~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~p~~ 513 (1358)
+..+++.+++.+++.++.+|+|.+.++|+++|||+||+|+||+.+.+++++.|++|++..++.....++..+++...|.+
T Consensus 457 ~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~ 536 (1495)
T PLN03232 457 QTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVV 536 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888777777777777888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccchhcccccCCCC
Q 000674 514 ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDR 593 (1358)
Q Consensus 514 v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~~~~~~~ 593 (1358)
+++++|++|.+.+ +++|++.+|+++++++.+..|+..+|..+..+.++++|++||++||..+|...+.. .+......
T Consensus 537 ~~~~~fg~~~v~~-~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~--~~~~~~~~ 613 (1495)
T PLN03232 537 VTLVSFGVFVLLG-GDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN--PPLQPGAP 613 (1495)
T ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc--CCcCCCCC
Confidence 8888888888775 78999999999999999999999999999999999999999999998765321110 11112234
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcE-EEEcCeEEEEeCCCCCCCC
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT-VNLYGSIAYVSQTSWIQSG 672 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~-i~~~g~i~yv~Q~~~~~~~ 672 (1358)
.|+++|++|+|+++.++++|+|+||++++||+++|+||+|||||||+++|+|+++|++|. +.++++||||+|+||++++
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~g 693 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNA 693 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccc
Confidence 799999999998654568999999999999999999999999999999999999999975 5678999999999999999
Q ss_pred CHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Q 000674 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752 (1358)
Q Consensus 673 tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~ 752 (1358)
||||||+||.++++++|++++++|++.+|++.+|+||+|+|||+|.+|||||||||+||||+|++||||||||||||||+
T Consensus 694 TIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~ 773 (1495)
T PLN03232 694 TVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDA 773 (1495)
T ss_pred cHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHHhcCchHHHHHHhhhhhcccCCCCCCC
Q 000674 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNA 832 (1358)
Q Consensus 753 ~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (1358)
+++++++++++.+..++||+|+|||+++.++.||+|++|++|+|+++|+++|++++++.+.++.+.+.......+. .+
T Consensus 774 ~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~--~~ 851 (1495)
T PLN03232 774 HVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAGKMDATQEV--NT 851 (1495)
T ss_pred HHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhcccccccccc--cc
Confidence 9999999999887778999999999999999999999999999999999999998888787776543321100000 00
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCccccccccccCCCchHHHHhhCcccHHHHHHHHHHccchhHHHHHHHHHHHH
Q 000674 833 GQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGF 912 (1358)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~ 912 (1358)
+.++..... +...... ..+.....+...+....+.++|+++.|.++|++|++|+++.++.+.+++++++.+..
T Consensus 852 ---~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~ 924 (1495)
T PLN03232 852 ---NDENILKLG---PTVTIDV-SERNLGSTKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTT 924 (1495)
T ss_pred ---ccccccccc---ccccccc-cccccccccccccchhhhhhHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 000000000 0000000 000000000000011234567888999999999999999877655555555566666
Q ss_pred HHHHHHHHHHHHhhhcCCC---CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccc
Q 000674 913 VGLQAAATYWLAYAIQIPK---ITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDST 989 (1358)
Q Consensus 913 ~~~~~~~~~wl~~~~~~~~---~~~~~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~ 989 (1358)
.++..+.++|+++|.+... ....+|+++|++++++..++.+++.++....+.++++++|++++++++++|++|||++
T Consensus 925 ~~~~~~~~~wl~~w~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~ 1004 (1495)
T PLN03232 925 EVLRVSSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTN 1004 (1495)
T ss_pred HHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcC
Confidence 7777889999999986431 2346789999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000674 990 PVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTT 1069 (1358)
Q Consensus 990 p~G~IlnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~i~v~~~~~~~l~~~~l~~~~~~~~~~~~y~~~sr~l~rl~~~~ 1069 (1358)
|+|+|+|||++|++.+|..++..+..++..++.+++.+++++++++..+++++|+.+++++++.+|.+++|+++|++..+
T Consensus 1005 ~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 1084 (1495)
T PLN03232 1005 PTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVT 1084 (1495)
T ss_pred CchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999988888888888888877777777887777888889999999999999999
Q ss_pred cchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-
Q 000674 1070 KAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYV- 1148 (1358)
Q Consensus 1070 ~spl~s~~~Etl~G~~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~l~~~g~i- 1148 (1358)
++|+++|++|+++|+.|||+|+.+++|.+++.+..|.+.+..+.....++|+..+++.++.+++++.+.+.+. ..+.+
T Consensus 1085 ~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~-~~~~~~ 1163 (1495)
T PLN03232 1085 RSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVL-RNGNAE 1163 (1495)
T ss_pred cChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccccc
Confidence 9999999999999999999999999999999999999999999888899999999988776555444433332 23332
Q ss_pred ----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEE
Q 000674 1149 ----APGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIR 1224 (1358)
Q Consensus 1149 ----s~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~ 1224 (1358)
.++.+|++++|+..+..++.++++.++++|+.++|+||+.+|++.|+|++...++..+++.||.+|+|+|+||+|+
T Consensus 1164 ~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~ 1243 (1495)
T PLN03232 1164 NQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLR 1243 (1495)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEE
Confidence 2567889999999999999999999999999999999999999998886543233345668999999999999999
Q ss_pred eCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCceecccccccc
Q 000674 1225 YRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFR 1304 (1358)
Q Consensus 1225 Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~IsiVpQdp~LF~ 1304 (1358)
|+++.++||||+||+|+||||||||||||||||||+++|+|+|||++|+|+|||+||+++++++||++|++|||||+||+
T Consensus 1244 Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~ 1323 (1495)
T PLN03232 1244 YRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFS 1323 (1495)
T ss_pred ECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeC
Confidence 98887789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCccccccccCCcCCCCC
Q 000674 1305 GSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSEQITYDYGWSS 1356 (1358)
Q Consensus 1305 GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~Gldt~v~e~g~~n~s~ 1356 (1358)
||||+||||+++++|+|||+||++||++|+|+++|+||||+|+|+|+ |+|.
T Consensus 1324 gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~-~LSg 1374 (1495)
T PLN03232 1324 GTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGE-NFSV 1374 (1495)
T ss_pred ccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCC-CCCH
Confidence 99999999999999999999999999999999999999999999999 9985
No 4
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=4.7e-185 Score=1871.51 Aligned_cols=1328 Identities=31% Similarity=0.511 Sum_probs=1077.8
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCcccchh---HHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 000674 18 EFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRIRREC---VSIVVSACCAVVGIAYLGYCLWNLIAKNDS 94 (1358)
Q Consensus 18 ~~~~~~~c~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (1358)
.||| ||||+++++.|+|+.++++++|..+++..+++. ...++++ .+.....+..++.++.+.+.+|........
T Consensus 20 ~~d~-t~~f~~~~~~~~p~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (1522)
T TIGR00957 20 NPDF-TKCFQNTVLAWVPCFYLWVCFPCYFLYLSRHDR--GYIQMTHLNKTKTALGFLLWIVCWADLFYSFWERSHGRAP 96 (1522)
T ss_pred CCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--CcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 3778 999999999999999999999987763322221 2112222 222222222222222233334432111111
Q ss_pred -cchhHHHHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHH-HHHHHHHhhcc---cccccchhhhHHHHHH
Q 000674 95 -SMSWLVSTVRGLIWVSLAISLLVKRS--KWIRMLITLWWMSFSLLVLA-LNIEILARTYT---INVVYILPLPVNLLLL 167 (1358)
Q Consensus 95 -~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 167 (1358)
........+..++|+..++....++. ..++..+..||++..++... .+......... ...+....+...+.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (1522)
T TIGR00957 97 APVFLVSPTLLGITMLLATFLIQLERRKGVQSSGIMLTFWLVALVCALAILRSKILLALKEDAIVDPFRDTTFYIYFALV 176 (1522)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHHHHHHHHHhhcccccccceehhhHHHHHHHH
Confidence 11122334445555432222222222 22345667888876654322 11111111100 0111111111111111
Q ss_pred HHHhhcccCCCCCCCCCCCCCcccccccCCCCCccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHH
Q 000674 168 FSAFRNFSHFTSPNREDKSLSEPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKF 247 (1358)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~ 247 (1358)
...+..... .+.. ...++...+.+++||++||++||++|||++|++++|||++|+.+|||+++++++++.++++|
T Consensus 177 ~~~~~~~~~--~~~~---~~~~~~~~~~~~~~e~~a~~~s~~~f~W~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~ 251 (1522)
T TIGR00957 177 LSQLVLSCF--SDKS---PLFSETNHDPNPCPESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVL 251 (1522)
T ss_pred HHHHHHHhh--cCCC---CccccccccCCCCCcccCCHHHHHHHHHhHHHHHHHhcCCCChhhccCCCHhHhHHHHHHHH
Confidence 111111000 0000 00011011234689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc------------------------------------CCCCCchHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000674 248 AYAWDSLVRENN------------------------------------SNNNGNLVRKVITNVYLKENIFIAICALLRTI 291 (1358)
Q Consensus 248 ~~~w~~~~~~~~------------------------------------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 291 (1358)
++.|+++.++.. +..++++++++++++|++.++..++++++.++
T Consensus 252 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~l~~~~~~l~~~~ 331 (1522)
T TIGR00957 252 VENWKKECKKTRKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMSFCFKAIHDL 331 (1522)
T ss_pred HHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccCCccHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 999997642110 01234679999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCC
Q 000674 292 AVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKK 371 (1358)
Q Consensus 292 ~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~~~iy~K~L~ls~~~~~~ 371 (1358)
+.+++|++++.+++|+.+++.+.+.|+.++++++++.++.+++.++|+|...++++++|++|.+.||+|+|+++...+++
T Consensus 332 ~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~ 411 (1522)
T TIGR00957 332 MMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKS 411 (1522)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCC
Confidence 99999999999999987654455678999999999999999999999999999999999999999999999999998889
Q ss_pred CCHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 372 HSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIA 451 (1358)
Q Consensus 372 ~~~G~ivNlms~D~~~i~~~~~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~~~~~l~~~~~~~~~~~q~~~m~~ 451 (1358)
.++|+++|+|++|++++.++..++|.+|..|+++++++++||..+|+++++|++++++++|++..+++.++++++++|+.
T Consensus 412 ~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (1522)
T TIGR00957 412 STVGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKS 491 (1522)
T ss_pred CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCC
Q 000674 452 QDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTG-SAPL 530 (1358)
Q Consensus 452 ~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~l~~-~~~L 530 (1358)
+|+|++.++|+|+|||+||+|+||+.|.+++++.|++|++.+++..+...+..+.++..|.++.+++|++|.+.. ++.+
T Consensus 492 ~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l 571 (1522)
T TIGR00957 492 KDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNIL 571 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 999999999999999999999999999999999999999999998888877777778889988888898887764 4689
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccchhcccc-cCCCCcEEEEeeEEEeCCCCC
Q 000674 531 NASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISL-QKSDRSVKIQEGNFSWDPELA 609 (1358)
Q Consensus 531 t~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~~-~~~~~~i~~~~~~f~~~~~~~ 609 (1358)
+++.+|+++++++.++.|+..+|..+..+.++++|++||++||..+|.++...+.... +.....|+++|++|+|+.+ +
T Consensus 572 ~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~ 650 (1522)
T TIGR00957 572 DAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARD-L 650 (1522)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCC-C
Confidence 9999999999999999999999999999999999999999999876654321111111 1122479999999999753 3
Q ss_pred CccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCCCCCCCCHHHHHhcCCCCCHHHH
Q 000674 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARY 689 (1358)
Q Consensus 610 ~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g~i~yv~Q~~~~~~~tv~eni~~g~~~~~~~~ 689 (1358)
+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+||||||+||++++||+|||.||.++++++|
T Consensus 651 ~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~ 730 (1522)
T TIGR00957 651 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYY 730 (1522)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHh--Hhc
Q 000674 690 DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM--AAL 767 (1358)
Q Consensus 690 ~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~--~~~ 767 (1358)
++++++|++.+|++.+|+||+|.+|++|.+|||||||||+||||+|++||++||||||||||+++++++++.+.. +..
T Consensus 731 ~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~ 810 (1522)
T TIGR00957 731 QQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVL 810 (1522)
T ss_pred HHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999874 356
Q ss_pred CCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHHhcCchHHHHHHhhhhhcccCCCCCC--CC--CCCccc--cc
Q 000674 768 EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDN--AG--QGGAEK--VE 841 (1358)
Q Consensus 768 ~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~--~~ 841 (1358)
+++|+|+|||+++.++.||+|++|++|+++++|+++++.++.+.+.++...+..........+. .. ..+.+. .+
T Consensus 811 ~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (1522)
T TIGR00957 811 KNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIE 890 (1522)
T ss_pred cCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHHhhcccccccccccccccccccccccccccc
Confidence 7899999999999999999999999999999999999998777777776543211110000000 00 000000 00
Q ss_pred cc-------cCCCCC-----CCCCCCCCCCC-cccc----ccccccCCCchHHHHhhCcccHHHHHHHHHHccchhHHHH
Q 000674 842 KG-------RTARPE-----EPNGIYPRKES-SEGE----ISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCL 904 (1358)
Q Consensus 842 ~~-------~~~~~~-----~~~~~~~~~~~-~~~~----~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~ 904 (1358)
.. .....+ ........... +..+ ...+...+..++|+++.|++++++|+.|+++.+ +..+++
T Consensus 891 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~Y~~~~g-~~~~~~ 969 (1522)
T TIGR00957 891 NGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIG-LFITFL 969 (1522)
T ss_pred ccccccccccchhhhhccccccccccccccccccccccccccccchhhhHHHHHHhcCcccHHHHHHHHHHcC-HHHHHH
Confidence 00 000000 00000000000 0000 000011234567788899999999999999754 444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCC-----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000674 905 GVLAQSGFVGLQAAATYWLAYAIQIPK-----ITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIF 979 (1358)
Q Consensus 905 ~~~~~~~~~~~~~~~~~wl~~~~~~~~-----~~~~~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll 979 (1358)
.+++.++..++..+.++|+++|.+... .....++++|++++++..++.+++.++....+.++++++|++++++++
T Consensus 970 ~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll 1049 (1522)
T TIGR00957 970 SIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKL 1049 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555667778889999999986421 123467789999999999998888888999999999999999999999
Q ss_pred cCCcccccccChhhHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 980 KAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATA 1059 (1358)
Q Consensus 980 ~~p~~fFd~~p~G~IlnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~i~v~~~~~~~l~~~~l~~~~~~~~~~~~y~~~s 1059 (1358)
++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++.++++++.+|+++++++|+++++++++++|.+++
T Consensus 1050 ~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1129 (1522)
T TIGR00957 1050 RSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASS 1129 (1522)
T ss_pred cCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888888888888899999999999
Q ss_pred HHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 1060 RELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF 1139 (1358)
Q Consensus 1060 r~l~rl~~~~~spl~s~~~Etl~G~~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~ 1139 (1358)
|+++|++.++++|+++|+.|+++|+.|||||+++++|.+++.+..|.+++..+.....++|+..++++++.+++++++.+
T Consensus 1130 r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1209 (1522)
T TIGR00957 1130 RQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALF 1209 (1522)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887655544443
Q ss_pred HHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEE
Q 000674 1140 LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELR 1219 (1358)
Q Consensus 1140 ~~l~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~ 1219 (1358)
.+ ...|.+++|.+|++++|+.++..++.++++.++++|+.++|+||+.+|++.|+|++...++..+++.||.+|.|+|+
T Consensus 1210 ~v-~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~ 1288 (1522)
T TIGR00957 1210 AV-ISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFR 1288 (1522)
T ss_pred HH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEE
Confidence 33 34678999999999999999999999999999999999999999999999888865333344566789999999999
Q ss_pred EEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCceeccc
Q 000674 1220 QLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQE 1299 (1358)
Q Consensus 1220 nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~IsiVpQd 1299 (1358)
||+|+|+++.++|||||||+|+||||||||||||||||||+++|+|+|||++|+|+|||+||+++++++||++|++||||
T Consensus 1289 nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQd 1368 (1522)
T TIGR00957 1289 NYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQD 1368 (1522)
T ss_pred EEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCC
Confidence 99999988777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCccccccccCCcCCCCCC
Q 000674 1300 PTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSEQITYDYGWSSS 1357 (1358)
Q Consensus 1300 p~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~Gldt~v~e~g~~n~s~~ 1357 (1358)
|+||+||||+||||+++++|||||+||++||++++|+++|+||||+|+|+|+ |+|..
T Consensus 1369 p~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~-~LSgG 1425 (1522)
T TIGR00957 1369 PVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGE-NLSVG 1425 (1522)
T ss_pred CcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCC-cCCHH
Confidence 9999999999999999999999999999999999999999999999999999 99853
No 5
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=3.7e-174 Score=1758.91 Aligned_cols=1147 Identities=27% Similarity=0.456 Sum_probs=990.0
Q ss_pred CCCCccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHhh
Q 000674 197 QTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYL 276 (1358)
Q Consensus 197 ~~p~~~a~~~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~ 276 (1358)
++||++||++||++|||++|++++||+++|+.+|||+|+++++++.++++|++.|+++.+++ .+.++++++++++|+
T Consensus 3 ~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~---~~~~~L~~~l~~~~~ 79 (1490)
T TIGR01271 3 RSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELASA---KKNPKLLNALRRCFF 79 (1490)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHHhcc---CCCChHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999998764321 245789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 277 KENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEE-NLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMV 355 (1358)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~-~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~~ 355 (1358)
+.+++.++++++.+++.+++|++++.+++|++..+. ..+.|+.++++++++.++.+++.++++|...++++++|++|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~ 159 (1490)
T TIGR01271 80 WRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFS 159 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999853322 2356888999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000674 356 AVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNV 435 (1358)
Q Consensus 356 ~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~~~~~l~~ 435 (1358)
+||+|+|+++..+.++.++|+++|+|++|++++.+++.++|.+|..|+++++++++||.++|+++++|++++++++|++.
T Consensus 160 ~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~ 239 (1490)
T TIGR01271 160 LIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQA 239 (1490)
T ss_pred HHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 436 PFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIIS 515 (1358)
Q Consensus 436 ~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~p~~v~ 515 (1358)
++++.+.++|+++|+.+|+|++.++|+|+|||+||+|+||+.|.+++++.|++|++.+++..+..++..++++..|.+++
T Consensus 240 ~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (1490)
T TIGR01271 240 CLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVV 319 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888787788888999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccCCCccchhcccccCCCCc
Q 000674 516 SVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVR-MIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRS 594 (1358)
Q Consensus 516 ~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~-~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~ 594 (1358)
+++|++|.+.+ .++++++||++++|++++.|+. .+|..+..+.++.+|++||++||..+|.++... ......
T Consensus 320 ~~~f~~y~~~~--~~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~-----~~~~~~ 392 (1490)
T TIGR01271 320 FLSVVPYALIK--GIILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEY-----NLTTTE 392 (1490)
T ss_pred HHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc-----cCCCCc
Confidence 99999988775 3789999999999999999985 799999999999999999999998877543111 112346
Q ss_pred EEEEeeEEEeCCCC-------------------------------CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHH
Q 000674 595 VKIQEGNFSWDPEL-------------------------------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI 643 (1358)
Q Consensus 595 i~~~~~~f~~~~~~-------------------------------~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~i 643 (1358)
++++|++|+|+... .+++|+|+||+|++||+++|+|||||||||||++|
T Consensus 393 i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l 472 (1490)
T TIGR01271 393 VEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMI 472 (1490)
T ss_pred eEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 99999999996310 13689999999999999999999999999999999
Q ss_pred hCCccCCCcEEEEcCeEEEEeCCCCCCCCCHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChH
Q 000674 644 LGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1358)
Q Consensus 644 lG~~~~~~G~i~~~g~i~yv~Q~~~~~~~tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 723 (1358)
+|+++|++|+|.++|+||||+|+||++++||+|||+||.++++++|++++++|+|.+|++.+|+||+|++|++|.+||||
T Consensus 473 ~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgG 552 (1490)
T TIGR01271 473 MGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGG 552 (1490)
T ss_pred hCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHH
Confidence 99999999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChH
Q 000674 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQ 803 (1358)
Q Consensus 724 QkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~ 803 (1358)
|||||+||||+|++||+|||||||||||+++++++++.|+....+++|+|+|||+++.++.||+|++|++|++++.|+++
T Consensus 553 qkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~ 632 (1490)
T TIGR01271 553 QRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFS 632 (1490)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999998877767899999999999999999999999999999999999
Q ss_pred HHHhcCchHHHHHHhhhh--h------------------cccCC-----CCCC------CCCCCcc--------------
Q 000674 804 ELLLAGTAFEQLVNAHRD--A------------------ITGLG-----PLDN------AGQGGAE-------------- 838 (1358)
Q Consensus 804 ~l~~~~~~~~~~~~~~~~--~------------------~~~~~-----~~~~------~~~~~~~-------------- 838 (1358)
++......+.+....... . ..... +.+. ......+
T Consensus 633 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1490)
T TIGR01271 633 ELQAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASA 712 (1490)
T ss_pred HHHhcChHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 998765555444421000 0 00000 0000 0000000
Q ss_pred ----------------cccccc-CC-------CCC------C-CCCCC------------------CCC-------C-C-
Q 000674 839 ----------------KVEKGR-TA-------RPE------E-PNGIY------------------PRK-------E-S- 860 (1358)
Q Consensus 839 ----------------~~~~~~-~~-------~~~------~-~~~~~------------------~~~-------~-~- 860 (1358)
..+... .. .++ . +.... ... . .
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1490)
T TIGR01271 713 RKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQL 792 (1490)
T ss_pred cccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhccccccccccccccc
Confidence 000000 00 000 0 00000 000 0 0
Q ss_pred -----------------cc--------ccc-----c-----ccccCCCchHHHHhhCcccHHHHHHHHHHccchhHHHHH
Q 000674 861 -----------------SE--------GEI-----S-----VKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLG 905 (1358)
Q Consensus 861 -----------------~~--------~~~-----~-----~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~ 905 (1358)
.+ .+. . ......+.++|+++.|.++|++|+.|+++.+++..++++
T Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~ 872 (1490)
T TIGR01271 793 QTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIF 872 (1490)
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCcHHHHHHH
Confidence 00 000 0 000012345677889999999999999977665555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCC---------CC-------------chhHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 906 VLAQSGFVGLQAAATYWLAYAIQIP---------KI-------------TSGIL-IGVYAGVSTASAVFVYFRSFFAAHL 962 (1358)
Q Consensus 906 ~~~~~~~~~~~~~~~~wl~~~~~~~---------~~-------------~~~~~-l~iy~~l~~~~~i~~~~~~~~~~~~ 962 (1358)
+++.++.+++..+.++|+..|.... +. ...+| +++|++++++..++.+++.++..+.
T Consensus 873 ~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 952 (1490)
T TIGR01271 873 CLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHT 952 (1490)
T ss_pred HHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667788889999998886411 00 11122 4556666655667778888999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccccccChhhHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000674 963 GLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAI 1042 (1358)
Q Consensus 963 ~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~i~v~~~~~~~l~~~~l 1042 (1358)
+.++++++|.+++++++++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++.++++++.+|+++++++
T Consensus 953 ~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~ 1032 (1490)
T TIGR01271 953 LLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAI 1032 (1490)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 000674 1043 FAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLI 1122 (1358)
Q Consensus 1043 ~~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~G~~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~ 1122 (1358)
|+++++++++++|.+++|+++|++..+++|+++|+.|+++|+.|||||+++++|.+++.+..|.+.+..+.....++|+.
T Consensus 1033 ~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~ 1112 (1490)
T TIGR01271 1033 PVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQ 1112 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcC
Q 000674 1123 LRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVE 1202 (1358)
Q Consensus 1123 ~~l~~l~~~~~~~~~~~~~l~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~ 1202 (1358)
.++++++.+.++.++++++. ...+++|.+|++++|++.+..++.++++.+.++|+.++|+||+.+|++.|+|++...+
T Consensus 1113 ~~~~~i~~~~~~~~~~l~~~--~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~ 1190 (1490)
T TIGR01271 1113 MRIDIIFVFFFIAVTFIAIG--TNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSG 1190 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence 99998776544443333222 2346788999999999999999999999999999999999999999998887542111
Q ss_pred --------------CCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccC
Q 000674 1203 --------------DKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE 1268 (1358)
Q Consensus 1203 --------------~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e 1268 (1358)
...+|+.||..|.|+|+||+|+|+++.++||+||||+|+||||||||||||||||||+++|+|+++
T Consensus 1191 ~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~ 1270 (1490)
T TIGR01271 1191 GGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS 1270 (1490)
T ss_pred cccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC
Confidence 113456799999999999999999887889999999999999999999999999999999999998
Q ss_pred CCCCEEEEcCEeCCCCChHHHhhcCceecccccccccchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCcccccccc
Q 000674 1269 PAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSEQI 1348 (1358)
Q Consensus 1269 ~~~G~I~IDGvDI~~i~l~~LRs~IsiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~Gldt~v~e 1348 (1358)
.+|+|+|||+||+++++++||++|++|||||+||+||||+||||+++++|+|||+||++|+++++|.++|+||||+|+|
T Consensus 1271 -~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e 1349 (1490)
T TIGR01271 1271 -TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVD 1349 (1490)
T ss_pred -CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCcccccccccc
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCCC
Q 000674 1349 TYDYGWSSS 1357 (1358)
Q Consensus 1349 ~g~~n~s~~ 1357 (1358)
+|. |+|..
T Consensus 1350 ~G~-nLSgG 1357 (1490)
T TIGR01271 1350 GGY-VLSNG 1357 (1490)
T ss_pred CCC-cCCHH
Confidence 999 99853
No 6
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=5.1e-166 Score=1678.65 Aligned_cols=1157 Identities=29% Similarity=0.445 Sum_probs=983.7
Q ss_pred CCCCCccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHHHHHHHHHHHhhc----------------
Q 000674 196 NQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENN---------------- 259 (1358)
Q Consensus 196 ~~~p~~~a~~~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~---------------- 259 (1358)
.+.||++|||+.++++.|++|.+.+..|..|+.+|+|+...+.|+-+...++.+..++...+..
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (1560)
T PTZ00243 58 TPVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTLDA 137 (1560)
T ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeeccc
Confidence 3479999999999999999999999999999999999999999997777666655443221100
Q ss_pred -C------------------------------------------------------------------------------
Q 000674 260 -S------------------------------------------------------------------------------ 260 (1358)
Q Consensus 260 -~------------------------------------------------------------------------------ 260 (1358)
.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (1560)
T PTZ00243 138 SSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLSST 217 (1560)
T ss_pred cccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeeccc
Confidence 0
Q ss_pred ----------CCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHH
Q 000674 261 ----------NNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVV 330 (1358)
Q Consensus 261 ----------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~ 330 (1358)
+++..+++++++++|++.++..++++++.+++.+++|++++.+++|+++++.....|+.++++++++.++
T Consensus 218 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~~~~g~~l~~~l~~~~~~ 297 (1560)
T PTZ00243 218 GSVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFLTQLI 297 (1560)
T ss_pred ccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHH
Confidence 0011258999999999999999999999999999999999999999976555555688889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCC--CCCHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000674 331 ESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRK--KHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLA 408 (1358)
Q Consensus 331 ~~~~~~~~~~~~~~~~~rir~~l~~~iy~K~L~ls~~~~~--~~~~G~ivNlms~D~~~i~~~~~~~~~~w~~plqi~~~ 408 (1358)
++++.++|+|...+.++++|++|.+.+|+|+++++..+.. +.++|+++|+|++|++++.+++.++|.+|++|++++++
T Consensus 298 ~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li~~ 377 (1560)
T PTZ00243 298 QSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLLS 377 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999886654 56899999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHH
Q 000674 409 IGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREK 488 (1358)
Q Consensus 409 ~~~L~~~lG~~~l~gl~v~~~~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~ 488 (1358)
+++||.++||++++|++++++++|++.++++.+.++++++|+.+|+|++.++|+++|||+||+||||+.|.++|++.|++
T Consensus 378 ~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~ 457 (1560)
T PTZ00243 378 ILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRAR 457 (1560)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 489 EFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDR 568 (1358)
Q Consensus 489 El~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~R 568 (1358)
|++.+++..+..++..++++.+|.++++++|++|++.+ ++||++++||++++|+.++.|+.++|..++.+.++.+|++|
T Consensus 458 El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g-~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~R 536 (1560)
T PTZ00243 458 ELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLG-HELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKR 536 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999898888999999999999999998886 78999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCccch----hc-------c------------------c-----------------------------ccC
Q 000674 569 INAFLLDHELNNDDV----RR-------I------------------S-----------------------------LQK 590 (1358)
Q Consensus 569 i~~fL~~~e~~~~~~----~~-------~------------------~-----------------------------~~~ 590 (1358)
|++||..+|.+...+ +. . + ...
T Consensus 537 I~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (1560)
T PTZ00243 537 ISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRH 616 (1560)
T ss_pred HHHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccc
Confidence 999998766321000 00 0 0 000
Q ss_pred CCCcEEEEeeEEEeCCC-------------------------------------CCCccceeEEEEeeCCeEEEEECCCC
Q 000674 591 SDRSVKIQEGNFSWDPE-------------------------------------LAIPTLRGVNLDIKWAQKIAVCGSVG 633 (1358)
Q Consensus 591 ~~~~i~~~~~~f~~~~~-------------------------------------~~~~~l~~i~l~i~~G~~~~i~G~~G 633 (1358)
....+.++|++|+|+.. .++++|+|+||+|++||+++|+||||
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nG 696 (1560)
T PTZ00243 617 PSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATG 696 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCC
Confidence 11245667776665310 12458999999999999999999999
Q ss_pred CCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCCCCCCCCHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccc
Q 000674 634 AGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEI 713 (1358)
Q Consensus 634 sGKStLl~~ilG~~~~~~G~i~~~g~i~yv~Q~~~~~~~tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~i 713 (1358)
|||||||++|+|+++|++|+|.++++||||||+||++++|++|||.|+.++++++|++++++|++++|++.+|+|++|++
T Consensus 697 sGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i 776 (1560)
T PTZ00243 697 SGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEI 776 (1560)
T ss_pred CcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHh
Confidence 99999999999999999999999999999999999999999999999988888899999999999999999999999999
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeC
Q 000674 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEG 793 (1358)
Q Consensus 714 g~~g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~ 793 (1358)
|++|.+|||||||||+||||+|++||+||||||||+||++++++++++++....+|+|+|++||+++.++.||+|++|++
T Consensus 777 ~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~ 856 (1560)
T PTZ00243 777 GEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGD 856 (1560)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999887666679999999999999999999999999
Q ss_pred CeEEEecChHHHHhcCchHHHHHHhhhhhcccCCCCCCCCCCCccccccccCCCCCCCCCCCCCC-CCccccccccccCC
Q 000674 794 GQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRK-ESSEGEISVKGLTQ 872 (1358)
Q Consensus 794 G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 872 (1358)
|++.++|+++++.+.+ .+.++........+..+..........+. .................. ...+.........+
T Consensus 857 G~i~~~G~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1560)
T PTZ00243 857 GRVEFSGSSADFMRTS-LYATLAAELKENKDSKEGDADAEVAEVDA-APGGAVDHEPPVAKQEGNAEGGDGAALDAAAGR 934 (1560)
T ss_pred CEEEEecCHHHHHhCh-HHHHHHHhhcccccccccccccccccccc-cccccccccccccccccccccccccccccccch
Confidence 9999999999998653 45555433211100000000000000000 000000000000000000 00000000011134
Q ss_pred CchHHHHhhCcccHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCchhHHHHHHHHHHHHHHHH
Q 000674 873 LTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIP-KITSGILIGVYAGVSTASAVF 951 (1358)
Q Consensus 873 ~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~-~~~~~~~l~iy~~l~~~~~i~ 951 (1358)
+.++|+++.|.++|++|+.|++..++...+++.++..+....+..+.++|++.|.+.. ......|+++|+++.++..++
T Consensus 935 l~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~l~~y~~~~~~~~~~ 1014 (1560)
T PTZ00243 935 LMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFKLSAATYLYVYLGIVLLGTFS 1014 (1560)
T ss_pred hhhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcccHHHHHHHHHHHHHHH
Confidence 5567788899999999999999876655544444445555667788899999998643 223456788888888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccChhhHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH
Q 000674 952 VYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMT 1031 (1358)
Q Consensus 952 ~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~i~v~~ 1031 (1358)
.+++.+.....+.++++++|++++++++++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++.+++++
T Consensus 1015 ~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~ 1094 (1560)
T PTZ00243 1015 VPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTS 1094 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHH
Q 000674 1032 FVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLF 1111 (1358)
Q Consensus 1032 ~~~~~l~~~~l~~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~G~~tIRAf~~e~~f~~~~~~~~d~~~~~~ 1111 (1358)
+.+|.++++++|++++++++.++|.+..|+++|++..+++|++++++|+++|+.|||+|+.+++|.+++.+..|.+.+..
T Consensus 1095 ~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~ 1174 (1560)
T PTZ00243 1095 ASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCS 1174 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 99998888888888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000674 1112 FHTNGVMEWLILRVEALQNLTLFTAALFLV---LIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIK 1188 (1358)
Q Consensus 1112 ~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~---l~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~ 1188 (1358)
+.....++|+..++++++++.+++++++++ ....+.+++|.++++++|+.++..++.++++.++++|+.++|+||+.
T Consensus 1175 ~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~ 1254 (1560)
T PTZ00243 1175 YLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLL 1254 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988776555444332 22345678999999999999999999999999999999999999999
Q ss_pred Hhhc-CCCCCCCCc-----------------------CCCCCC---CCCCCcceEEEEEEEEEeCCCCCCccccceEEec
Q 000674 1189 QFMH-IPPEPPAIV-----------------------EDKRPP---SSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFS 1241 (1358)
Q Consensus 1189 e~~~-~~~E~~~~~-----------------------~~~~~~---~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Is~~I~ 1241 (1358)
+|++ .|+|+.... ++..++ +.||..|.|+|+||+|+|+++.++|||||||+|+
T Consensus 1255 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~ 1334 (1560)
T PTZ00243 1255 YYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIA 1334 (1560)
T ss_pred HHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEEC
Confidence 9996 344321100 011122 2356779999999999999887889999999999
Q ss_pred CCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCceecccccccccchhhhcCCCCCCCHHH
Q 000674 1242 EGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDE 1321 (1358)
Q Consensus 1242 ~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~IsiVpQdp~LF~GTIR~NLdp~~~~sDee 1321 (1358)
||||||||||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+||||+||||+++++|+|
T Consensus 1335 ~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdee 1414 (1560)
T PTZ00243 1335 PREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAE 1414 (1560)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCchHHhcCCCccccccccCCcCCCCC
Q 000674 1322 IWKALEKCQLKTTISSLPNKLDSSEQITYDYGWSS 1356 (1358)
Q Consensus 1322 I~~AL~~a~l~~~I~~Lp~Gldt~v~e~g~~n~s~ 1356 (1358)
||+||++||++++|.++|+||||.|+|+|. |.|.
T Consensus 1415 I~~Al~~a~l~~~I~~lp~Gldt~vge~G~-nLSg 1448 (1560)
T PTZ00243 1415 VWAALELVGLRERVASESEGIDSRVLEGGS-NYSV 1448 (1560)
T ss_pred HHHHHHHCCChHHHhhCcccccccccCCcC-cCCH
Confidence 999999999999999999999999999999 9885
No 7
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.4e-122 Score=1149.64 Aligned_cols=1059 Identities=21% Similarity=0.256 Sum_probs=779.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCC--cch----hHHHHHHHHHHHHHHHHH-HHHH
Q 000674 267 VRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSN---RGE--ENL----QEGLSIVGCLIITKVVES-FTQR 336 (1358)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~---~~~--~~~----~~g~~~~~~l~~~~~~~~-~~~~ 336 (1358)
+++....+-+.++++..+..+...+.+..+|++...+.+..+ ... ... ..++.++ .+.+..++.+ +...
T Consensus 15 ~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~-~lg~~~~~~~~~q~~ 93 (1228)
T KOG0055|consen 15 FFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFV-YLGVGVFISGFIQVS 93 (1228)
T ss_pred hHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 444334455778888888888889999999988655433221 111 111 1122222 2222222333 3356
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-----HHHHHHHHHHHHHHHHHH
Q 000674 337 HCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-----WFHLTWSLALQLFLAIGV 411 (1358)
Q Consensus 337 ~~~~~~~~~~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-----~~~~~w~~plqi~~~~~~ 411 (1358)
+|.+.+.|...|+|..+..++.||...+.+. +++|++++-|+.|+++|.|.+. ++|.+-....-++++++.
T Consensus 94 c~~~~geRq~~riR~~yl~~iLrQdi~~fD~----~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~ 169 (1228)
T KOG0055|consen 94 CWMRTGERQTARIRSKYLKAILRQDIGWFDT----NSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYY 169 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccceeec----ccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999998864 3459999999999999887644 445544444444445444
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHH
Q 000674 412 LFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFK 491 (1358)
Q Consensus 412 L~~~lG~~~l~gl~v~~~~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~ 491 (1358)
.| .+. ++.+.+.-++......+++.+.+...+.++...+.-++++|++++||+|-.|+-|+...++-.+.=+.-.|
T Consensus 170 ~W-~Lt---lv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k 245 (1228)
T KOG0055|consen 170 GW-KLT---LVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALK 245 (1228)
T ss_pred HH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHH
Confidence 33 332 33333332333334556788888888888888899999999999999999999998765544332222112
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 492 -WLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRIN 570 (1358)
Q Consensus 492 -~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~ 570 (1358)
.+|+..+......+.+++.-.......|.+..++..+..+++++|+++...-.-...|.+..+.+..+.+|+++..+|.
T Consensus 246 ~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~ 325 (1228)
T KOG0055|consen 246 FGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIF 325 (1228)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHH
Confidence 2222222222222222222223334444443444447889999999987777778888998899999999999999999
Q ss_pred HHhccc-CCCccchhcccccCCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC
Q 000674 571 AFLLDH-ELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK 649 (1358)
Q Consensus 571 ~fL~~~-e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~ 649 (1358)
+-++.. +.++....+.......+.|+++|+.|+||.+++.++|+|+||+|++|+.+++||||||||||++++|.|+++|
T Consensus 326 ~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP 405 (1228)
T KOG0055|consen 326 ETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDP 405 (1228)
T ss_pred HHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 988643 3333221222334467899999999999999888999999999999999999999999999999999999999
Q ss_pred CCcEEEEcC-------------eEEEEeCCCCCCCCCHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCCccccC
Q 000674 650 ISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715 (1358)
Q Consensus 650 ~~G~i~~~g-------------~i~yv~Q~~~~~~~tv~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~ 715 (1358)
++|+|.++| +||.|+|+|.+|+.||+|||.||+| ...++..++++.....+.+..+|+|++|.+||
T Consensus 406 ~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge 485 (1228)
T KOG0055|consen 406 TSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGE 485 (1228)
T ss_pred CCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccC
Confidence 999999998 5999999999999999999999986 46788999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCe
Q 000674 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1358)
Q Consensus 716 ~g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~ 795 (1358)
+|..|||||||||||||||.+||+||||||||||||++.++.+ ++.++...+|+|.|+|+|+++.+++||+|++|++|+
T Consensus 486 ~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~V-q~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~ 564 (1228)
T KOG0055|consen 486 RGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVV-QEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGK 564 (1228)
T ss_pred CCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHH-HHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCE
Confidence 9999999999999999999999999999999999999998765 567788889999999999999999999999999999
Q ss_pred EEEecChHHHHhcCchHHHHHHhhhhhcccCCCCCCCCCCCccccccccCCCCCCCCCCCCCC-CCccccc--cccccCC
Q 000674 796 ITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRK-ESSEGEI--SVKGLTQ 872 (1358)
Q Consensus 796 i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~ 872 (1358)
|+|.|+|+||++.++.|.++++.+.......+.+++++. .+.......... ......+.. .....+. ..+....
T Consensus 565 IvE~G~h~ELi~~~G~Y~~lv~~Q~~~~~~~~~~~~~~~--~~~~~~s~~~s~-~~~~~~~~~~~~~~~~~~~~~e~~~~ 641 (1228)
T KOG0055|consen 565 IVEQGTHDELIALGGIYSSLVRLQELEKAAEDEEEEESL--KEERSRSLKSSS-SSPSLSRGSNRSNLLSVKPEGEDPEE 641 (1228)
T ss_pred EEEecCHHHHHhccchHHHHHHHHhhhhhhhccccccch--hhhhhhcccccc-ccccccCCcccccccccccccccccc
Confidence 999999999999999999999876543221110000000 000000000000 000000000 0000000 0000000
Q ss_pred CchHHHHhhCcccHHHHHHHHHHccc-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhc----CC-C---CchhHHHHHHHH
Q 000674 873 LTEDEEMEIGDVGWKPFMDYLNVSKG-MSLLCLGVLAQSGFVGLQAAATYWLAYAIQ----IP-K---ITSGILIGVYAG 943 (1358)
Q Consensus 873 ~~~~e~~~~g~v~~~~y~~y~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~----~~-~---~~~~~~l~iy~~ 943 (1358)
...+|+ -.+ .+++.++.+++ |..+++.+++.+..........+.++...+ .+ + .....+..+|++
T Consensus 642 ~~~~~~---~~~---s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~ 715 (1228)
T KOG0055|consen 642 PVSEED---EKV---SFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLG 715 (1228)
T ss_pred cccccc---ccc---cHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 000011 122 34444444443 455555555555554444444444443322 11 1 112347788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccc--cChhhHHHHHhcCHHHHHhhcHHHHHHHHHHHH
Q 000674 944 VSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDS--TPVGRILTRLSSDLSILDFDIPFSIVFVAASGT 1021 (1358)
Q Consensus 944 l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~--~p~G~IlnRfs~D~~~id~~l~~~l~~~~~~~~ 1021 (1358)
+++...++.+++.+++...|.+.++++|..+|+++++.+++|||. +. |+|.+|+++|...+...+...+..++.++.
T Consensus 716 l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~ 794 (1228)
T KOG0055|consen 716 LGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIA 794 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999997 45 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHH
Q 000674 1022 ELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYL 1101 (1358)
Q Consensus 1022 ~~l~~i~v~~~~~~~l~~~~l~~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~G~~tIRAf~~e~~f~~~~~ 1101 (1358)
.++..+++.++.+|+++++++...+++......+.+......+..............|++++++||++|+.|++|.+.|.
T Consensus 795 ~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~ 874 (1228)
T KOG0055|consen 795 AVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYK 874 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHH
Confidence 99999999999999998877654444443333333332333333333344456778999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 1102 KLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF----LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYL 1177 (1358)
Q Consensus 1102 ~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~----~~l~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~l 1177 (1358)
+.++...+...... .|-++...+-.++..+.-++. ..++.+|.+++..+-..+.-...-...+........++
T Consensus 875 ~~l~~p~~~~~~~~---~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~ 951 (1228)
T KOG0055|consen 875 EELEKPRKSSFKRG---LISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDI 951 (1228)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHH
Confidence 99988777665433 344444444344433333322 34667888888877666655554455566777788899
Q ss_pred HHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeC--CCCCCccccceEEecCCcEEEEECCCCcc
Q 000674 1178 ANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYR--PNAPLVLKGITCTFSEGTRVGVVGRTGSG 1255 (1358)
Q Consensus 1178 e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~--~~~~~VLk~Is~~I~~GekVgIVGrTGSG 1255 (1358)
-++..|+.+|+++++.+++-+...+.. ....+.+|+|+|+||+|+|+ |+. +||+|+|++|++||+||+||+||||
T Consensus 952 ~ka~~Aa~~iF~i~dr~~~i~~~~~~~--~~~~~~~G~I~~~~V~F~YPsRP~~-~Il~~l~l~i~~GqTvALVG~SGsG 1028 (1228)
T KOG0055|consen 952 SKAKIAAGSIFEILDRKPTIDPDSTSG--GKLPNVKGDIEFRNVSFAYPTRPDV-PVLNNLSLSIRAGQTVALVGPSGSG 1028 (1228)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCC--CccccceeEEEEeeeEeeCCCCCCc-hhhcCCcEEecCCCEEEEECCCCCC
Confidence 999999999999998877433211111 11124689999999999994 554 5999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCceecccccccccchhhhcCCC-CCCCHHHHHHHHHHcCCchH
Q 000674 1256 KTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKALEKCQLKTT 1334 (1358)
Q Consensus 1256 KSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~IsiVpQdp~LF~GTIR~NLdp~-~~~sDeeI~~AL~~a~l~~~ 1334 (1358)
|||++.+|.|||||++|.|.|||+||++++++.||++|++|.|||.||++||||||... .+.|++||.+|++.|++|+|
T Consensus 1029 KSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~F 1108 (1228)
T KOG0055|consen 1029 KSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNF 1108 (1228)
T ss_pred HHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999866 34799999999999999999
Q ss_pred HhcCCCccccccccCCc
Q 000674 1335 ISSLPNKLDSSEQITYD 1351 (1358)
Q Consensus 1335 I~~Lp~Gldt~v~e~g~ 1351 (1358)
|.+||+||||.|||.|.
T Consensus 1109 I~sLP~GyDT~vGerG~ 1125 (1228)
T KOG0055|consen 1109 ISSLPQGYDTRVGERGV 1125 (1228)
T ss_pred HhcCcCcccCccCcccC
Confidence 99999999999999987
No 8
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=3.1e-111 Score=1134.18 Aligned_cols=1071 Identities=16% Similarity=0.148 Sum_probs=735.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 274 VYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSAL 353 (1358)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l 353 (1358)
.+++.++++.++.++..++..+.|+++..+++-+.... .... ++..+++..++..++...+.+...+++.++-..+
T Consensus 57 ~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~-~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l 132 (1466)
T PTZ00265 57 SHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGE-NVND---IIFSLVLIGIFQFILSFISSFCMDVVTTKILKTL 132 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666667777777777777777777776442111 1111 1111222222222222222333445555555555
Q ss_pred HHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHH
Q 000674 354 MVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFG---VVGLGALPGLVLFLI 429 (1358)
Q Consensus 354 ~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~~---~lG~~~l~gl~v~~~ 429 (1358)
...+|++.++++..-.+....|++.|.++.|++.+.+.+. .+..+...++.++.++++++. .+.+.+++.++ +
T Consensus 133 R~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~p---l 209 (1466)
T PTZ00265 133 KLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFP---L 209 (1466)
T ss_pred HHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---H
Confidence 5666777777665444556789999999999999887543 344445555556655555443 34333333332 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000674 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVI-YW 508 (1358)
Q Consensus 430 ~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~-~~ 508 (1358)
++.+...+.+.+++..++..+..++..+.+.|.++|||+||.|+-|+.+.++.++..+.-.+...+.....++...+ ..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~ 289 (1466)
T PTZ00265 210 IYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMING 289 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334556777777888888888999999999999999999999999988877654444333322322222222111 11
Q ss_pred HHHHHHHHHH-HHHHHHhCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Q 000674 509 MSPTIISSVI-FLGCALTGS-------APLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNN 580 (1358)
Q Consensus 509 ~~p~~v~~~~-f~~~~l~~~-------~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~ 580 (1358)
+......++. |+++.+..+ +.++++.+++.+........++..+...+..+.++.+|.+||.+.++.++..+
T Consensus 290 ~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~ 369 (1466)
T PTZ00265 290 FILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVE 369 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 1111122222 333333332 35788887776554444445555666678889999999999999997643211
Q ss_pred cchhcccccCCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEc-C-
Q 000674 581 DDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY-G- 658 (1358)
Q Consensus 581 ~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~-g- 658 (1358)
...+....+ ....|+++|++|+|+.+++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |
T Consensus 370 ~~~~~~~~~-~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~ 448 (1466)
T PTZ00265 370 NNDDGKKLK-DIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSH 448 (1466)
T ss_pred CCCCCccCC-CCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCc
Confidence 111111111 1237999999999986544579999999999999999999999999999999999999999999994 3
Q ss_pred ------------eEEEEeCCCCCCCCCHHHHHhcCCC-------------------------------------------
Q 000674 659 ------------SIAYVSQTSWIQSGSIRDNILYGKP------------------------------------------- 683 (1358)
Q Consensus 659 ------------~i~yv~Q~~~~~~~tv~eni~~g~~------------------------------------------- 683 (1358)
+||||+|+|.+|++||+|||.+|..
T Consensus 449 ~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1466)
T PTZ00265 449 NLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNT 528 (1466)
T ss_pred chhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccc
Confidence 3899999999999999999999741
Q ss_pred ---------------CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCC
Q 000674 684 ---------------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFS 748 (1358)
Q Consensus 684 ---------------~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep~s 748 (1358)
.++++..++++.+++++.+..+|+|.+|.+|++|.+|||||||||+||||++++|+|+|||||||
T Consensus 529 ~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTS 608 (1466)
T PTZ00265 529 TDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATS 608 (1466)
T ss_pred cchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 23356777888889999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhccCeEEEEeCC---------------------------------
Q 000674 749 AVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGG--------------------------------- 794 (1358)
Q Consensus 749 ~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G--------------------------------- 794 (1358)
+||+++++.+.+.+.+... +|+|+|+|||+++.+..||+|++|++|
T Consensus 609 aLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1466)
T PTZ00265 609 SLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNN 688 (1466)
T ss_pred ccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccccccccccccccccccc
Confidence 9999999998776554433 589999999999999889999999986
Q ss_pred --------------eEEEecChHHHHh-cCchHHHHHHhhhhhcccCC-C-CCCCCCCCccccccccCCC-CCCCC----
Q 000674 795 --------------QITQSGNYQELLL-AGTAFEQLVNAHRDAITGLG-P-LDNAGQGGAEKVEKGRTAR-PEEPN---- 852 (1358)
Q Consensus 795 --------------~i~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~-~~~~~---- 852 (1358)
+|+|+|+++|+++ .++.|..+++.+........ . .+................. ..+..
T Consensus 689 ~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (1466)
T PTZ00265 689 NNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPDEMNGNSK 768 (1466)
T ss_pred cccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhcccccccccccccccccccccccccccccccccccccccc
Confidence 5999999999998 57888888865432211100 0 0000000000000000000 00000
Q ss_pred -CCCCCC-CCcc----cc-ccccccCCCchHHHH----hhCcccHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHH
Q 000674 853 -GIYPRK-ESSE----GE-ISVKGLTQLTEDEEM----EIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATY 921 (1358)
Q Consensus 853 -~~~~~~-~~~~----~~-~~~~~~~~~~~~e~~----~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 921 (1358)
...... .... .+ .+.....+....++. ......+..+++++...... +++.+++.++..++..+.++
T Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 846 (1466)
T PTZ00265 769 HENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKD--VTIIALSILVAGGLYPVFAL 846 (1466)
T ss_pred ccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 000000 0000 00 000000000000000 00001122333444322211 22222222333334444444
Q ss_pred HHHhhhcC----CC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccc--cChhh
Q 000674 922 WLAYAIQI----PK--ITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDS--TPVGR 993 (1358)
Q Consensus 922 wl~~~~~~----~~--~~~~~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~--~p~G~ 993 (1358)
.++.+++. .. .....+..++++++++..++.+++.++....+.+...++|.++++++++.|++|||+ +++|+
T Consensus 847 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~ 926 (1466)
T PTZ00265 847 LYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGL 926 (1466)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHH
Confidence 44444321 10 012234556666777788888999999999999999999999999999999999996 88999
Q ss_pred HHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH------
Q 000674 994 ILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIA--TARELIRI------ 1065 (1358)
Q Consensus 994 IlnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~i~v~~~~~~~l~~~~l~~~~~~~~~~~~y~~--~sr~l~rl------ 1065 (1358)
+++|+++|++.+...+...+..++..++.+++.++++++.+|.++++++|++++.........+ ..++.++.
T Consensus 927 l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1466)
T PTZ00265 927 LSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKDVEKKEINQPG 1006 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 9999999999999999988999999999999999999999999887766554433222111111 11111111
Q ss_pred -------HhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 000674 1066 -------NGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTA-A 1137 (1358)
Q Consensus 1066 -------~~~~~spl~s~~~Etl~G~~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~-~ 1137 (1358)
+.+..+...+.++|+++|++|||+|+.|+++.+++.+..+...+..........++....+.+..+..+++ .
T Consensus 1007 ~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1086 (1466)
T PTZ00265 1007 TVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYW 1086 (1466)
T ss_pred cccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12224456789999999999999999999999999999988777666554444444444444433322222 2
Q ss_pred HHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCC-CCCCCCcceE
Q 000674 1138 LFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRP-PSSWPFKGRI 1216 (1358)
Q Consensus 1138 ~~~~l~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~-~~~wp~~G~I 1216 (1358)
+.+.++..|.++.|.+..++.+.+....++..+...+.+++.+..|.+|+.++++.+++.+...+...+ +...+..|.|
T Consensus 1087 ~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I 1166 (1466)
T PTZ00265 1087 FGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKI 1166 (1466)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceE
Confidence 334556789999998887776655555567778888999999999999999999876543211111111 0112346899
Q ss_pred EEEEEEEEeCCC-CCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCC--------------------------
Q 000674 1217 ELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-------------------------- 1269 (1358)
Q Consensus 1217 ~f~nVsf~Y~~~-~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~-------------------------- 1269 (1358)
+|+||+|+|++. ..+||+|+||+|+|||+|||||+||||||||+++|.|||+|
T Consensus 1167 ~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~ 1246 (1466)
T PTZ00265 1167 EIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDE 1246 (1466)
T ss_pred EEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccc
Confidence 999999999632 23699999999999999999999999999999999999999
Q ss_pred ----------------------------CCCEEEEcCEeCCCCChHHHhhcCceecccccccccchhhhcCCCC-CCCHH
Q 000674 1270 ----------------------------AGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDD 1320 (1358)
Q Consensus 1270 ----------------------------~~G~I~IDGvDI~~i~l~~LRs~IsiVpQdp~LF~GTIR~NLdp~~-~~sDe 1320 (1358)
++|+|+|||+||+++++++||++|++|||||+||+|||||||..+. +++||
T Consensus 1247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~e 1326 (1466)
T PTZ00265 1247 EQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATRE 1326 (1466)
T ss_pred ccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHH
Confidence 6999999999999999999999999999999999999999997653 58999
Q ss_pred HHHHHHHHcCCchHHhcCCCccccccccCCcCCCC
Q 000674 1321 EIWKALEKCQLKTTISSLPNKLDSSEQITYDYGWS 1355 (1358)
Q Consensus 1321 eI~~AL~~a~l~~~I~~Lp~Gldt~v~e~g~~n~s 1355 (1358)
||++|++.|+++|||.+||+||||.|||+|. +-|
T Consensus 1327 eI~~A~k~A~l~~fI~~LP~GydT~VGe~G~-~LS 1360 (1466)
T PTZ00265 1327 DVKRACKFAAIDEFIESLPNKYDTNVGPYGK-SLS 1360 (1466)
T ss_pred HHHHHHHHcCCHHHHHhCccccCCccCCCCC-cCC
Confidence 9999999999999999999999999999998 654
No 9
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=7.3e-69 Score=679.92 Aligned_cols=542 Identities=21% Similarity=0.253 Sum_probs=419.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 269 KVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMR 348 (1358)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r 348 (1358)
+...+.+++.+++..++.++..++..+.|+++..+++....+..+....+.+++++++..++..++.....+...+.+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (588)
T PRK11174 14 KQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKAGQH 93 (588)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678888888889999999999999999999886531111112222333444455555666555555667788999
Q ss_pred HHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHH
Q 000674 349 MRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLF---GVVGLGALPGL 424 (1358)
Q Consensus 349 ir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~---~~lG~~~l~gl 424 (1358)
+...+...+|+|.++++.....+.++|+++|.++.|++++.++.. .+..++...+.+++++++++ +.+++.+++.+
T Consensus 94 ~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~ 173 (588)
T PRK11174 94 IRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLGTA 173 (588)
T ss_pred HHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998777788999999999999999998653 45555555555555554443 33333333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 000674 425 VLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLI----ESRREKEFKWLSEAQLRK 500 (1358)
Q Consensus 425 ~v~~~~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i----~~~R~~El~~l~~~~~~~ 500 (1358)
.+...+...+.+..++.+++.++..++..+.+.|.++|+++||.|+||+.+.++. ++.|+.+.+..+......
T Consensus 174 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (588)
T PRK11174 174 ---PLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSS 250 (588)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222334456778888888899999999999999999999999999999876665 556666655544433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000674 501 AYGTVIYWMSPTIISSVIFLGCALTGS-------APLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFL 573 (1358)
Q Consensus 501 ~~~~~~~~~~p~~v~~~~f~~~~l~~~-------~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL 573 (1358)
.+..++... +. +.++.++++.+.+. ..+++..+|.++.+...+..|+..++..+..+.++++|.+||.+++
T Consensus 251 ~~~~~~~~~-~~-~~~~~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l 328 (588)
T PRK11174 251 AVLEFFASI-SI-ALVAVYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFL 328 (588)
T ss_pred HHHHHHHHH-HH-HHHHHHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322222221 11 11222333333331 1234445566666777788999999999999999999999999999
Q ss_pred cccCCCccchhcccccCCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcE
Q 000674 574 LDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653 (1358)
Q Consensus 574 ~~~e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~ 653 (1358)
+.++.++.......+....+.|+++|++|.|.++ +++|+|+||++++||.++|+||+|||||||+++|+|++ |++|+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~--~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~ 405 (588)
T PRK11174 329 ETPLAHPQQGEKELASNDPVTIEAEDLEILSPDG--KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGS 405 (588)
T ss_pred cCCCcccCCCccccCCCCCceEEEEeeEEeccCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcE
Confidence 7765322111100111123469999999877643 57999999999999999999999999999999999999 89999
Q ss_pred EEEcC-------------eEEEEeCCCCCCCCCHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCC
Q 000674 654 VNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1358)
Q Consensus 654 i~~~g-------------~i~yv~Q~~~~~~~tv~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~ 719 (1358)
|.++| +|+||||+|++|++||+|||.+|.+ .+++++.++++.|+++++++.+|+|++|.+||+|.+
T Consensus 406 I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~ 485 (588)
T PRK11174 406 LKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAG 485 (588)
T ss_pred EEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCC
Confidence 99998 5999999999999999999999965 889999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEe
Q 000674 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1358)
Q Consensus 720 LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1358)
||||||||++||||++++|+|+||||||||||++++++|.+.+ ....+++|+|+|||+++.++.||+|++|++|+++++
T Consensus 486 LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l-~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~ 564 (588)
T PRK11174 486 LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQAL-NAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQ 564 (588)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeec
Confidence 9999999999999999999999999999999999999998644 555678999999999999999999999999999999
Q ss_pred cChHHHHhcCchHHHHHHhh
Q 000674 800 GNYQELLLAGTAFEQLVNAH 819 (1358)
Q Consensus 800 g~~~~l~~~~~~~~~~~~~~ 819 (1358)
|+++|++++++.|.++...+
T Consensus 565 G~~~eL~~~~~~y~~l~~~q 584 (588)
T PRK11174 565 GDYAELSQAGGLFATLLAHR 584 (588)
T ss_pred CCHHHHHhcchHHHHHHHHh
Confidence 99999999888888887544
No 10
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-67 Score=628.76 Aligned_cols=537 Identities=20% Similarity=0.300 Sum_probs=423.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc---chhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEE---NLQE-GLSIVGCLIITKVVESFTQRHCFFGSRRS 345 (1358)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~---~~~~-g~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 345 (1358)
.+.+..|+.+..+.++.++..+....-|.++.++++-+...++ .... ...+.++.++..+...+-..++.+...|+
T Consensus 140 ~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv 219 (716)
T KOG0058|consen 140 GLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGERV 219 (716)
T ss_pred HHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455567778888888888888899999999998886654111 1112 23333334444444444456677788889
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHH---HHHhHHHH
Q 000674 346 GMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEF-PFWFHLTWSLALQLFLAIGVLF---GVVGLGAL 421 (1358)
Q Consensus 346 ~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~-~~~~~~~w~~plqi~~~~~~L~---~~lG~~~l 421 (1358)
..|+|..+...+.++.+...+ ++.+||+++.++.|++-+.+. ..++....-..+|.+.++.+++ +.+....+
T Consensus 220 ~~rlR~~lF~sil~QdiaFFD----~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~ 295 (716)
T KOG0058|consen 220 VARLRTDLFRSLLRQDIAFFD----ENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTL 295 (716)
T ss_pred HHHHHHHHHHHHHhhhhhhhc----cCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 999999888888888887775 456999999999999999884 4567777777788888877765 34444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHH----HHHHHHHHHHHHHHHHHHHH
Q 000674 422 PGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEK----FKSLIESRREKEFKWLSEAQ 497 (1358)
Q Consensus 422 ~gl~v~~~~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~----f~~~i~~~R~~El~~l~~~~ 497 (1358)
+.+++++ .+..++++++++..++..++..+-.+..+|.|++||+|+.|+-|+. |.+++++.++.-. |-.
T Consensus 296 i~~P~v~---~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~----k~a 368 (716)
T KOG0058|consen 296 IVVPIVA---LVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSK----KEA 368 (716)
T ss_pred HHhcHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHH----HHH
Confidence 3333222 2345567777777777788888888999999999999999999974 4444444433321 111
Q ss_pred HHHHHHHHHH-HH-HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000674 498 LRKAYGTVIY-WM-SPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLD 575 (1358)
Q Consensus 498 ~~~~~~~~~~-~~-~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~ 575 (1358)
+..++....+ .+ .-..++...++++ ++..+.+|++...+.+..-..+..++..+....+.++++..+.+|+.+|++.
T Consensus 369 ~a~~~f~~~~~~~~~~~~~siL~~Gg~-Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr 447 (716)
T KOG0058|consen 369 VAYGIFFGSTNLLGNLAVLSILFYGGH-LVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDR 447 (716)
T ss_pred HHhhHhHhHHHHHHhHHHHHHHHhccc-hhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhcc
Confidence 1111110000 01 1122333334444 4444889999988888888888999999999999999999999999999976
Q ss_pred cCCCccchhcccccCCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEE
Q 000674 576 HELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655 (1358)
Q Consensus 576 ~e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~ 655 (1358)
+..-+.+ ....+....+.|+|+|++|+||.+++.++|+|+||+|+|||.+|+||||||||||+.++|+.+|+|++|+|.
T Consensus 448 ~P~i~~~-G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Il 526 (716)
T KOG0058|consen 448 KPRIPLT-GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRIL 526 (716)
T ss_pred CCCCCCC-CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE
Confidence 5433222 111222467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcC-------------eEEEEeCCCCCCCCCHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCC
Q 000674 656 LYG-------------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1358)
Q Consensus 656 ~~g-------------~i~yv~Q~~~~~~~tv~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 721 (1358)
+|| +||+|.|+|.+|++||+|||.+|.+ .++|+..++.+.+..++.+..+|+|++|.+||+|..||
T Consensus 527 lDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLS 606 (716)
T KOG0058|consen 527 LDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLS 606 (716)
T ss_pred ECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCcccccc
Confidence 998 4999999999999999999999976 56788999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecC
Q 000674 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1358)
Q Consensus 722 GGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 801 (1358)
|||||||||||||++||.||||||.|||||++++..+ ++.+....+++|||+++|+++.+++||+|+|+++|+++|.|+
T Consensus 607 GGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lV-q~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~ 685 (716)
T KOG0058|consen 607 GGQKQRIAIARALLRNPRVLILDEATSALDAESEYLV-QEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGT 685 (716)
T ss_pred chHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHH-HHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEeccc
Confidence 9999999999999999999999999999999987754 666777778899999999999999999999999999999999
Q ss_pred hHHHHhcC-chHHHHHHhhh
Q 000674 802 YQELLLAG-TAFEQLVNAHR 820 (1358)
Q Consensus 802 ~~~l~~~~-~~~~~~~~~~~ 820 (1358)
|+|++++. +.|.++++.+.
T Consensus 686 h~eLl~~~~gly~~Lv~~q~ 705 (716)
T KOG0058|consen 686 HDELLSKPNGLYAKLVQRQL 705 (716)
T ss_pred HHHHhhCcccHHHHHHHHhc
Confidence 99999987 68888887654
No 11
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=9.6e-65 Score=632.19 Aligned_cols=545 Identities=23% Similarity=0.333 Sum_probs=438.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 267 VRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSG 346 (1358)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 346 (1358)
.++..++-+++.+.-..+..++..+++++.|++.+.+++.+--. .....-+.++.++.+..+++.+....-.+...+++
T Consensus 144 ~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~-~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~ 222 (709)
T COG2274 144 WFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPD-ASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLG 222 (709)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555777777777888888999999999999999865322 22223344555555566666665444445667889
Q ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHH
Q 000674 347 MRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLA---IGVLFGVVGLGALPG 423 (1358)
Q Consensus 347 ~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~~~~~w~~plqi~~~---~~~L~~~lG~~~l~g 423 (1358)
.|+...+...+|++.|+++..-..++++|++++.+ .|.++|.+++.. ...+.++.+..+ +++++..-++-+++.
T Consensus 223 ~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~-~el~~Ir~flt~--~~l~~iiD~~~~~i~l~vm~~ys~~L~li~ 299 (709)
T COG2274 223 KRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRV-RELEQIREFLTG--SILTLIIDLLFALIFLAVMFLYSWKLTLIV 299 (709)
T ss_pred HHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888889999999997 588888887652 222333433333 334444444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 424 LVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYG 503 (1358)
Q Consensus 424 l~v~~~~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~ 503 (1358)
++.+.+.+.+..++.+.+++..++.++...++-+...|.++||++||..+-|+.+..+.++.=.+..+.-.+........
T Consensus 300 l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 379 (709)
T COG2274 300 LAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALIL 379 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 55555555566777888888889999999999999999999999999999999999988887776665444433333222
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccc
Q 000674 504 TVIYWMSPTI-ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDD 582 (1358)
Q Consensus 504 ~~~~~~~p~~-v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~ 582 (1358)
.........+ ..++.+.+..++-++.+|.+..+...++......|+..+.+....+.+++++.+|+.+.++.+..++.+
T Consensus 380 ~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~ 459 (709)
T COG2274 380 NTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGD 459 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 2222222222 223334444455458999999999999999999999999999999999999999999999876443222
Q ss_pred hhcccccCCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----
Q 000674 583 VRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---- 658 (1358)
Q Consensus 583 ~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g---- 658 (1358)
......++.++.|+++|++|+|++++ .++|+|+|++|++||.+||+|+||||||||+|+|+|+++|++|+|.++|
T Consensus 460 ~~~~~~~~~~g~I~~~nvsf~y~~~~-~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~ 538 (709)
T COG2274 460 KTLIHLPKLQGEIEFENVSFRYGPDD-PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLN 538 (709)
T ss_pred cccccccccCceEEEEEEEEEeCCCC-cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHH
Confidence 11223455678999999999999764 4799999999999999999999999999999999999999999999998
Q ss_pred ---------eEEEEeCCCCCCCCCHHHHHhcCCCCC-HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHH
Q 000674 659 ---------SIAYVSQTSWIQSGSIRDNILYGKPMD-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1358)
Q Consensus 659 ---------~i~yv~Q~~~~~~~tv~eni~~g~~~~-~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 728 (1358)
+|+||+|++.+|++||+|||.++.|.. .|+..++++..+.++++..+|.|++|.+||+|.+||||||||+
T Consensus 539 ~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrl 618 (709)
T COG2274 539 DIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRL 618 (709)
T ss_pred hcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHH
Confidence 599999999999999999999998854 4788888888999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHHhc
Q 000674 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 729 ~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1358)
+||||++++|+|+||||||||||+++++.+.+.+. ...+|+|+|++||+++.++.||+|+||++|+|+++|+++|+++.
T Consensus 619 alARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~-~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 619 ALARALLSKPKILLLDEATSALDPETEAIILQNLL-QILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred HHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHH-HHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh
Confidence 99999999999999999999999999999988764 44577999999999999999999999999999999999999999
Q ss_pred CchHHHHHH
Q 000674 809 GTAFEQLVN 817 (1358)
Q Consensus 809 ~~~~~~~~~ 817 (1358)
++.+.++..
T Consensus 698 ~g~y~~l~~ 706 (709)
T COG2274 698 GGLYARLYQ 706 (709)
T ss_pred cChHHHHHh
Confidence 888888764
No 12
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.3e-64 Score=650.78 Aligned_cols=542 Identities=23% Similarity=0.274 Sum_probs=423.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 267 VRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSG 346 (1358)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 346 (1358)
+++..++.+++.++...++.++..++..+.|+++..+++.+-... ....-+.+++++++..++..++.....+...+++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (686)
T TIGR03797 126 LLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDA-DRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLE 204 (686)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566777888888888999999999999999888653221 1122233344444444555555544455677889
Q ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000674 347 MRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW--FHLTWSLALQLFLAIGVLFGVVGLGALPGL 424 (1358)
Q Consensus 347 ~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~--~~~~w~~plqi~~~~~~L~~~lG~~~l~gl 424 (1358)
.++...+...+|+|.++++.....+.++|+++|.++ |++.+.+++.. +..+...++ +++++++++..-++.+++.+
T Consensus 205 ~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li~l 282 (686)
T TIGR03797 205 TRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIF-ALLNLGLMFYYSWKLALVAV 282 (686)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999876566788999999997 88888875432 223333333 33444444444344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 425 VLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGT 504 (1358)
Q Consensus 425 ~v~~~~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~ 504 (1358)
+++.+...+...+.+..++..++.++..+++.+...|.++|+++||.++.|+.+.++.++.-++..+...+.........
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (686)
T TIGR03797 283 ALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLT 362 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444566678888888999999999999999999999999999999998877776655544433333322222222
Q ss_pred HHHHHHHHH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccch
Q 000674 505 VIYWMSPTI-ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV 583 (1358)
Q Consensus 505 ~~~~~~p~~-v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~ 583 (1358)
.+......+ ..++.+.+..++.++.+|.+.+++...++..+..|+..++..+..+.+++++++|+.+++..++..+..
T Consensus 363 ~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~- 441 (686)
T TIGR03797 363 VFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA- 441 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC-
Confidence 211111112 222222333333447899999999999999999999999999999999999999999999765422111
Q ss_pred hcccccCCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----
Q 000674 584 RRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----- 658 (1358)
Q Consensus 584 ~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g----- 658 (1358)
...+....+.|+++|++|+|+++ ++++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 442 -~~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~ 519 (686)
T TIGR03797 442 -KTDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAG 519 (686)
T ss_pred -cCCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCc
Confidence 11111234579999999999754 35799999999999999999999999999999999999999999999988
Q ss_pred --------eEEEEeCCCCCCCCCHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000674 659 --------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1358)
Q Consensus 659 --------~i~yv~Q~~~~~~~tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 730 (1358)
+||||||+|++|++|++|||.++.+.+++++.++++.++++++++.+|+|.+|.+|++|.+||||||||++|
T Consensus 520 ~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRial 599 (686)
T TIGR03797 520 LDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLI 599 (686)
T ss_pred CCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHH
Confidence 499999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHHhcCc
Q 000674 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGT 810 (1358)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1358)
|||++++|++++||||||+||+++++++.+.+... ++|+|+|||+++.++.||+|++|++|+|++.|+++|++++++
T Consensus 600 ARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~ 676 (686)
T TIGR03797 600 ARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREG 676 (686)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCCc
Confidence 99999999999999999999999999998876442 589999999999999999999999999999999999999888
Q ss_pred hHHHHHH
Q 000674 811 AFEQLVN 817 (1358)
Q Consensus 811 ~~~~~~~ 817 (1358)
.|.++.+
T Consensus 677 ~y~~l~~ 683 (686)
T TIGR03797 677 LFAQLAR 683 (686)
T ss_pred HHHHHHH
Confidence 8888764
No 13
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1e-64 Score=654.78 Aligned_cols=540 Identities=19% Similarity=0.226 Sum_probs=426.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1358)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ri 349 (1358)
..++.+++.++...+..++..++..+.|+++..+++.+-... .....+.+++++++..++..++.....+...+++.++
T Consensus 147 ~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (710)
T TIGR03796 147 RRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQG-RQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKL 225 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777778888888999999999999887543221 1112233344444445555555555556778889999
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000674 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1358)
Q Consensus 350 r~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~ 428 (1358)
...+...+|+|.++++....++.++|+++|.++.| +.+.++.. .+..+....+.+++.+++++..-++-+++.++.+.
T Consensus 226 ~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~ 304 (710)
T TIGR03796 226 AVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAA 304 (710)
T ss_pred HHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987666678999999999988 67777543 33334444444555555555443444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYW 508 (1358)
Q Consensus 429 ~~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~ 508 (1358)
+.+.+...+.+...+..++.++..+++.+.+.|.++|+++||.+++|+.+.++.++.++++.+...+.....+....+..
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (710)
T TIGR03796 305 INVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPT 384 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566778888888888999999999999999999999999999999999988888777655544433332222111
Q ss_pred HHH-HHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccch---
Q 000674 509 MSP-TII-SSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV--- 583 (1358)
Q Consensus 509 ~~p-~~v-~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~--- 583 (1358)
... ... .++.++++.+. .+.+|.+.+++.+.++..+..|+..++..+..+.+++++++|+.++++.++..+...
T Consensus 385 ~i~~~~~~~il~~g~~~v~-~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~ 463 (710)
T TIGR03796 385 LLTSLNSALILVVGGLRVM-EGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEA 463 (710)
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccc
Confidence 111 111 22223334334 478999999999999999999999999999999999999999999997654322111
Q ss_pred -h-cccc-cCCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--
Q 000674 584 -R-RISL-QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-- 658 (1358)
Q Consensus 584 -~-~~~~-~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-- 658 (1358)
. .... +...+.|+++|++|+|+++ ++++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 464 ~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~ 542 (710)
T TIGR03796 464 PAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIP 542 (710)
T ss_pred cccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEe
Confidence 0 0111 2234679999999999864 35799999999999999999999999999999999999999999999987
Q ss_pred -----------eEEEEeCCCCCCCCCHHHHHhcCC-CCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHH
Q 000674 659 -----------SIAYVSQTSWIQSGSIRDNILYGK-PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1358)
Q Consensus 659 -----------~i~yv~Q~~~~~~~tv~eni~~g~-~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 726 (1358)
+|+||||+|+++++|++|||.++. +.+++++.++++.++++++++.+|+|.+|.+||+|.+|||||||
T Consensus 543 i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQ 622 (710)
T TIGR03796 543 REEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQ 622 (710)
T ss_pred HHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHH
Confidence 499999999999999999999886 47889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHH
Q 000674 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806 (1358)
Q Consensus 727 Rv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 806 (1358)
|++||||++++|+++|||||||+||+++++++++.+.. .++|+|+|||+++.++.||+|++|++|++++.|+++|++
T Consensus 623 RiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll 699 (710)
T TIGR03796 623 RLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELW 699 (710)
T ss_pred HHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 99999999999999999999999999999999987653 589999999999999999999999999999999999999
Q ss_pred hcCchHHHHH
Q 000674 807 LAGTAFEQLV 816 (1358)
Q Consensus 807 ~~~~~~~~~~ 816 (1358)
++++.|.++.
T Consensus 700 ~~~~~y~~l~ 709 (710)
T TIGR03796 700 AVGGAYARLI 709 (710)
T ss_pred HcCCcHHHHh
Confidence 8887777654
No 14
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.1e-64 Score=648.11 Aligned_cols=535 Identities=21% Similarity=0.253 Sum_probs=399.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc--chhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 000674 272 TNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEE--NLQEGLSIVGCLII-TKVVESFTQRHCFFGSRRSGMR 348 (1358)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~--~~~~g~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~r 348 (1358)
.+.+++.++...++.++..++..+.|++...+++.+..... .......+.+++.+ ..++..+....+.+...++..
T Consensus 156 ~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~- 234 (711)
T TIGR00958 156 SGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINL- 234 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34455667777788888899999999999999987643211 11111111111111 122222222223333444444
Q ss_pred HHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000674 349 MRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLF 427 (1358)
Q Consensus 349 ir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~ 427 (1358)
.+...+|+|.++......++.++|+++|.++.|++.+.+.+. .+..+....+++++++++++..-+..+++.++.+
T Consensus 235 ---~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~ 311 (711)
T TIGR00958 235 ---RIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINL 311 (711)
T ss_pred ---HHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 445566777777765544567899999999999999987543 4566666666666666665543322233222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIY 507 (1358)
Q Consensus 428 ~~~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~ 507 (1358)
.+...+...+.+..++..++.++..++..+...|.++|+++||.|++|+.+.++.++..++-.+..++.....+......
T Consensus 312 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (711)
T TIGR00958 312 PLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTT 391 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445567777778888888899999999999999999999999998666655544432222222211111111111
Q ss_pred HHHH--HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccchhc
Q 000674 508 WMSP--TIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRR 585 (1358)
Q Consensus 508 ~~~p--~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~ 585 (1358)
.... ..+..+.++++.+. .+.+|.+.+++.+.++..+..|+..++..+..+.+++++.+||.+|++.++..++...
T Consensus 392 ~~~~~~~~~~il~~g~~lv~-~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~- 469 (711)
T TIGR00958 392 SVLGMLIQVLVLYYGGQLVL-TGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGT- 469 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC-
Confidence 1111 11122223333333 4789999999999999999999999999999999999999999999976543221111
Q ss_pred ccccCCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------
Q 000674 586 ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------- 658 (1358)
Q Consensus 586 ~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------- 658 (1358)
..+.+..+.|+++|++|+|++++++++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 470 ~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~ 549 (711)
T TIGR00958 470 LAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYD 549 (711)
T ss_pred CCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcC
Confidence 1112234579999999999865456899999999999999999999999999999999999999999999998
Q ss_pred ------eEEEEeCCCCCCCCCHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000674 659 ------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1358)
Q Consensus 659 ------~i~yv~Q~~~~~~~tv~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 731 (1358)
+|+||||+|+++++||||||.+|.+ .+++++.++++.++++++++.+|+|.+|.+|++|.+||||||||++||
T Consensus 550 ~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalA 629 (711)
T TIGR00958 550 HHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIA 629 (711)
T ss_pred HHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHH
Confidence 5999999999999999999999965 678899999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHHhcCch
Q 000674 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTA 811 (1358)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 811 (1358)
||++++|+|+|||||||+||+++++.+.+ ....+++|+|+|||+++.+..+|+|++|++|+|+++|+|+|++++++.
T Consensus 630 RALl~~p~ILILDEpTSaLD~~te~~i~~---~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~ 706 (711)
T TIGR00958 630 RALVRKPRVLILDEATSALDAECEQLLQE---SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGC 706 (711)
T ss_pred HHHhcCCCEEEEEccccccCHHHHHHHHH---hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCc
Confidence 99999999999999999999999999877 223478999999999999999999999999999999999999988776
Q ss_pred HHHH
Q 000674 812 FEQL 815 (1358)
Q Consensus 812 ~~~~ 815 (1358)
|.++
T Consensus 707 y~~l 710 (711)
T TIGR00958 707 YKHL 710 (711)
T ss_pred hHhc
Confidence 6553
No 15
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=9.9e-64 Score=643.46 Aligned_cols=534 Identities=22% Similarity=0.279 Sum_probs=422.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 268 RKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGM 347 (1358)
Q Consensus 268 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 347 (1358)
++...+.+++.+....++.++..++.++.|++++.+++..-... .....+.+++++++..++..++.....+...+.+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (694)
T TIGR03375 138 FWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQ-AFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGK 216 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667888888888888889999999999999988653221 11222333333444444455554444556678899
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000674 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW--FHLTWSLALQLFLAIGVLFGVVGLGALPGLV 425 (1358)
Q Consensus 348 rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~--~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~ 425 (1358)
++...+...+|+|.++++..- .+.++|++++.+ .|++.+.++... +..+...+. +++.+++++..-++.+++.++
T Consensus 217 ~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li~l~ 293 (694)
T TIGR03375 217 KADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPF-ALLFLLVIAIIGGPLVWVPLV 293 (694)
T ss_pred HHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHH
Confidence 999999999999999998765 567899999999 799999886542 233333333 334444455444444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 426 LFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTV 505 (1358)
Q Consensus 426 v~~~~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~ 505 (1358)
++.+.+.+...+.+..++..++.++..+++.+.+.|.++|+++||.+++|+.+.++.++..++..+...+..........
T Consensus 294 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (694)
T TIGR03375 294 AIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATN 373 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556667788888899999999999999999999999999999999999999888777766555444433332222
Q ss_pred HHHHHHHH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccch
Q 000674 506 IYWMSPTI--ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV 583 (1358)
Q Consensus 506 ~~~~~p~~--v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~ 583 (1358)
+......+ +.++.++++.+.. +.+|.+..+..+.++..+..|+..++..+..+.+++++++|+.++++.++..+...
T Consensus 374 ~~~~~~~~~~~~il~~g~~~v~~-g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~ 452 (694)
T TIGR03375 374 FAQFIQQLVSVAIVVVGVYLISD-GELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGT 452 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 21111111 1122333444444 78999999999999999999999999999999999999999999998754322111
Q ss_pred hcccccCCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----
Q 000674 584 RRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----- 658 (1358)
Q Consensus 584 ~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g----- 658 (1358)
.....+...+.|+++|++|+|+++ ++++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 453 ~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~ 531 (694)
T TIGR03375 453 RFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQ 531 (694)
T ss_pred CCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhh
Confidence 111112234579999999999754 35799999999999999999999999999999999999999999999987
Q ss_pred --------eEEEEeCCCCCCCCCHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000674 659 --------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1358)
Q Consensus 659 --------~i~yv~Q~~~~~~~tv~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 729 (1358)
+|+||||+|++|++||+|||.++.+ .+++++.++++.++++++++.+|+|.+|.+||+|.+||||||||++
T Consensus 532 ~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRla 611 (694)
T TIGR03375 532 IDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVA 611 (694)
T ss_pred CCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHH
Confidence 5999999999999999999999976 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHHhc
Q 000674 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 730 LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1358)
||||++++|++++||||||+||+++++++.+.+ ....+++|+|+|||+++.++.||+|++|++|++++.|+++|+++.
T Consensus 612 lARall~~p~iliLDE~Ts~LD~~te~~i~~~l-~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 612 LARALLRDPPILLLDEPTSAMDNRSEERFKDRL-KRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999999999999999999999999998765 444578999999999999999999999999999999999999754
No 16
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=8.4e-63 Score=624.27 Aligned_cols=543 Identities=17% Similarity=0.210 Sum_probs=413.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1358)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ri 349 (1358)
.+++.+++.++...+..++..++..+.|+++..+++........ .....++..+++..++..++.....+...+++.++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 96 (582)
T PRK11176 18 PTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADR-SVLKWMPLVVIGLMILRGITSFISSYCISWVSGKV 96 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666777777778888888887755432111 11111222222233333444333334556778888
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000674 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1358)
Q Consensus 350 r~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~ 428 (1358)
...+...+|+|.++++...-.+.+.|+++|.++.|++++.+... .+..+...++.+++++++++..-++.+++.++++.
T Consensus 97 ~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~ 176 (582)
T PRK11176 97 VMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAP 176 (582)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999987776778899999999999999987543 34455566666666666665543333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYW 508 (1358)
Q Consensus 429 ~~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~ 508 (1358)
+...+...+.+.+++..++.++..++..+...|.++|+++||.|++|+.+.++.++.-++-.+...+..........+..
T Consensus 177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (582)
T PRK11176 177 IVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQ 256 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455677778888888899999999999999999999999999887776655444333222222222221111111
Q ss_pred -HHHHHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccchhcc
Q 000674 509 -MSPTII-SSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRI 586 (1358)
Q Consensus 509 -~~p~~v-~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~ 586 (1358)
...+.. ..+.++++.... +.++.+.+.+.++++..+..|+..+...+..+.+++.+++|+.++++.++.++.. ..
T Consensus 257 ~~~~~~~~~i~~~g~~~~~~-g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~--~~ 333 (582)
T PRK11176 257 LIASLALAFVLYAASFPSVM-DTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEG--KR 333 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC--Cc
Confidence 111111 222333444444 6899999988888888899999999999999999999999999999765432211 11
Q ss_pred cccCCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------
Q 000674 587 SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------- 658 (1358)
Q Consensus 587 ~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------- 658 (1358)
..+...+.|+++|++|+|+++ +.++|+|+|++|++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 334 ~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~ 412 (582)
T PRK11176 334 VIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTL 412 (582)
T ss_pred CCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCH
Confidence 112223469999999999754 35799999999999999999999999999999999999999999999987
Q ss_pred -----eEEEEeCCCCCCCCCHHHHHhcCCC--CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000674 659 -----SIAYVSQTSWIQSGSIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1358)
Q Consensus 659 -----~i~yv~Q~~~~~~~tv~eni~~g~~--~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 731 (1358)
.|+|+||+|.++++|++|||.+|.+ +++++++++++.++++++++.+|+|.+|.+|++|.+||||||||++||
T Consensus 413 ~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LA 492 (582)
T PRK11176 413 ASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIA 492 (582)
T ss_pred HHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHH
Confidence 4899999999999999999999853 788999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHHhcCch
Q 000674 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTA 811 (1358)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 811 (1358)
||++++|++++|||||||||+++++.+++.+.. ..+++|+|+|||+++.++.||+|++|++|++++.|++++++++++.
T Consensus 493 Rall~~~~ililDEptsaLD~~t~~~i~~~l~~-~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~~ 571 (582)
T PRK11176 493 RALLRDSPILILDEATSALDTESERAIQAALDE-LQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGV 571 (582)
T ss_pred HHHHhCCCEEEEECccccCCHHHHHHHHHHHHH-HhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCh
Confidence 999999999999999999999999998876643 4567999999999999999999999999999999999999998888
Q ss_pred HHHHHHh
Q 000674 812 FEQLVNA 818 (1358)
Q Consensus 812 ~~~~~~~ 818 (1358)
|.++...
T Consensus 572 y~~l~~~ 578 (582)
T PRK11176 572 YAQLHKM 578 (582)
T ss_pred HHHHHHH
Confidence 8888754
No 17
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7e-65 Score=605.87 Aligned_cols=409 Identities=24% Similarity=0.341 Sum_probs=364.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccChhhHHHHHhcCHHHHHhhcHHHHHHHH
Q 000674 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVA 1017 (1358)
Q Consensus 938 l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~D~~~id~~l~~~l~~~~ 1017 (1358)
..+..++.++++++.+++.+++.+.+.+...++|.++|++++|+.++|||.+.+|+|++|+|+|...+...++..+...+
T Consensus 191 ~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~l 270 (716)
T KOG0058|consen 191 CTILLGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGL 270 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 44566677888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHH
Q 000674 1018 ASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFF 1097 (1358)
Q Consensus 1018 ~~~~~~l~~i~v~~~~~~~l~~~~l~~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~G~~tIRAf~~e~~f~ 1097 (1358)
.+.++.++.+++|++.+|.+.++.+..+++...+.++|.+..|++.+..+++-+.......|.+++++|||+|+.|++..
T Consensus 271 R~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~ 350 (716)
T KOG0058|consen 271 RNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEV 350 (716)
T ss_pred HHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHH
Confidence 99999999999999999999999998888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 1098 QNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAAL-FLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCY 1176 (1358)
Q Consensus 1098 ~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~-~~~l~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~ 1176 (1358)
++|.+.+++..+...+.......+....++.+++..+.+.. ...++..|.+++|.+..++.|...+...+..+...+++
T Consensus 351 ~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~ 430 (716)
T KOG0058|consen 351 KRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSE 430 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998776665444433333333344555544333332 34567789999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeC--CCCCCccccceEEecCCcEEEEECCCCc
Q 000674 1177 LANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYR--PNAPLVLKGITCTFSEGTRVGVVGRTGS 1254 (1358)
Q Consensus 1177 le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~--~~~~~VLk~Is~~I~~GekVgIVGrTGS 1254 (1358)
+.+...|.+|++||+|.+|.-+.. +...|. ..+|.|+|+||+|+|+ |+. +||||+||+|+|||+||+||||||
T Consensus 431 lmkgvGAs~rvFel~dr~P~i~~~--G~~~p~--~~~G~IeF~~VsFaYP~Rp~~-~Vlk~lsfti~pGe~vALVGPSGs 505 (716)
T KOG0058|consen 431 LMKGVGASERVFELMDRKPRIPLT--GTLAPD--HLQGVIEFEDVSFAYPTRPDV-PVLKNLSFTIRPGEVVALVGPSGS 505 (716)
T ss_pred HHHhcchHHHHHHHhccCCCCCCC--Cccccc--cccceEEEEEeeeecCCCCCc-hhhcCceeeeCCCCEEEEECCCCC
Confidence 999999999999999987765432 222222 4689999999999994 443 599999999999999999999999
Q ss_pred cHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCch
Q 000674 1255 GKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKT 1333 (1358)
Q Consensus 1255 GKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~IsiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~ 1333 (1358)
||||++++|.|||||++|+|++||+||++++.+.||++|++|.|||+||+|||||||.... +.+||||.+|+++||.||
T Consensus 506 GKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~ 585 (716)
T KOG0058|consen 506 GKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHE 585 (716)
T ss_pred CHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHH
Confidence 9999999999999999999999999999999999999999999999999999999996432 589999999999999999
Q ss_pred HHhcCCCccccccccCCc
Q 000674 1334 TISSLPNKLDSSEQITYD 1351 (1358)
Q Consensus 1334 ~I~~Lp~Gldt~v~e~g~ 1351 (1358)
||+++|+||||.|||.|.
T Consensus 586 FI~~~p~gY~T~VGEkG~ 603 (716)
T KOG0058|consen 586 FITNFPDGYNTVVGEKGS 603 (716)
T ss_pred HHHhCccccccccCCccc
Confidence 999999999999999987
No 18
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=8.9e-63 Score=635.94 Aligned_cols=536 Identities=24% Similarity=0.286 Sum_probs=412.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMR 350 (1358)
Q Consensus 271 l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir 350 (1358)
..+.+++.++...++.++..++.++.|+++..+++..-... ....-+.+++++++..++..++.....+...+.+.++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (708)
T TIGR01193 150 LITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHK-MMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLS 228 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777888888999999999999887543221 11112223333333444444444444456677888888
Q ss_pred HHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHH-H-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000674 351 SALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-F-HLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1358)
Q Consensus 351 ~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~-~-~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~ 428 (1358)
..+...+|+|.++++....++.++|+++|.++ |.+++.++... . ..+...+. +++++++++..-++-+++.++++.
T Consensus 229 ~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li~l~~~~ 306 (708)
T TIGR01193 229 IDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWI-LVIVGLFLVRQNMLLFLLSLLSIP 306 (708)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 89999999999999876666788999999998 99998875432 2 22223333 333333344332222333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q 000674 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQ----LRKAYGT 504 (1358)
Q Consensus 429 ~~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~----~~~~~~~ 504 (1358)
+...+...+.+..++..++.++..+++.+...|.++|+++||.+++|+.+.++.++..++..+.-.+.. ...++..
T Consensus 307 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (708)
T TIGR01193 307 VYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKA 386 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445567788888889999999999999999999999999999999888877665544333222222 1222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccchh
Q 000674 505 VIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVR 584 (1358)
Q Consensus 505 ~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~ 584 (1358)
++....+ +.++.++++.+. .+.+|.+.+++...++..+..|+..+...+..+.+++++++|+.+++..++..+....
T Consensus 387 ~~~~~~~--i~il~~g~~lv~-~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~ 463 (708)
T TIGR01193 387 VTKLILN--VVILWTGAYLVM-RGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKK 463 (708)
T ss_pred HHHHHHH--HHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccc
Confidence 2222222 122233444444 4789999999999999999999999999999999999999999999976532221111
Q ss_pred cccccCCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------
Q 000674 585 RISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1358)
Q Consensus 585 ~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------ 658 (1358)
....+...+.|+++|++|+|++ ++++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 464 ~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~ 541 (708)
T TIGR01193 464 RTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDI 541 (708)
T ss_pred ccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHc
Confidence 1111223467999999999974 35799999999999999999999999999999999999999999999998
Q ss_pred -------eEEEEeCCCCCCCCCHHHHHhcCC--CCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000674 659 -------SIAYVSQTSWIQSGSIRDNILYGK--PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1358)
Q Consensus 659 -------~i~yv~Q~~~~~~~tv~eni~~g~--~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 729 (1358)
+|+||||+|++|++||+|||.++. ..+++++.++++.++++++++.+|+|.+|.+|++|.+||||||||++
T Consensus 542 ~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRia 621 (708)
T TIGR01193 542 DRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIA 621 (708)
T ss_pred CHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHH
Confidence 499999999999999999999983 46788999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHHhcC
Q 000674 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1358)
Q Consensus 730 LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1358)
||||++++|+++|||||||+||+++++++.+.+.. .+++|+|+|||+++.+..||+|++|++|++++.|+++|+++++
T Consensus 622 lARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~--~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~ 699 (708)
T TIGR01193 622 LARALLTDSKVLILDESTSNLDTITEKKIVNNLLN--LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRN 699 (708)
T ss_pred HHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHH--hcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcC
Confidence 99999999999999999999999999999887754 3689999999999999999999999999999999999999888
Q ss_pred chHHHHH
Q 000674 810 TAFEQLV 816 (1358)
Q Consensus 810 ~~~~~~~ 816 (1358)
+.|.+++
T Consensus 700 ~~y~~l~ 706 (708)
T TIGR01193 700 GFYASLI 706 (708)
T ss_pred CcHHHHh
Confidence 7777764
No 19
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=2.5e-62 Score=619.28 Aligned_cols=542 Identities=19% Similarity=0.250 Sum_probs=421.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1358)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ri 349 (1358)
.+.+.+++.+++..++.++..++....|+++..+++..-... ....-+.+++.+++..++..+......+...+.+.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 85 (571)
T TIGR02203 7 SYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGR-DRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKV 85 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888888888899999999999888776432211 1111112222233333344444333345567788888
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000674 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1358)
Q Consensus 350 r~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~ 428 (1358)
...+...+|+|.++.+....++.+.|++.|.++.|++++.++.. .+..++...+.+++++++++..-++.+++.+++++
T Consensus 86 ~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~ 165 (571)
T TIGR02203 86 VRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLP 165 (571)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 88888899999999887766778899999999999999987654 34555555555666666555433333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYW 508 (1358)
Q Consensus 429 ~~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~ 508 (1358)
+.+.+...+.+..++..++..+..+++.+..+|.++|+++||.++.|+.+.++.++..++..+...+.....+....+..
T Consensus 166 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (571)
T TIGR02203 166 VLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQ 245 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444556777888888899999999999999999999999999999988777776666554433333222222221111
Q ss_pred HHH-HHHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccchhcc
Q 000674 509 MSP-TIISS-VIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRI 586 (1358)
Q Consensus 509 ~~p-~~v~~-~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~ 586 (1358)
... ....+ +.++++... .+.+|++.+++.+.++..+..|+..+...+..+.+++++.+|+.+++..++..+... .
T Consensus 246 ~~~~~~~~~~~~~g~~~~~-~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~--~ 322 (571)
T TIGR02203 246 LIASLALAVVLFIALFQAQ-AGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGT--R 322 (571)
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC--C
Confidence 111 11222 223333333 478999999999999999999999999999999999999999999997654322111 1
Q ss_pred cccCCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------
Q 000674 587 SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------- 658 (1358)
Q Consensus 587 ~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------- 658 (1358)
+.....+.|+++|++|+|++. ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 323 ~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~ 401 (571)
T TIGR02203 323 AIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTL 401 (571)
T ss_pred CCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCH
Confidence 111234579999999999764 35799999999999999999999999999999999999999999999988
Q ss_pred -----eEEEEeCCCCCCCCCHHHHHhcCC--CCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000674 659 -----SIAYVSQTSWIQSGSIRDNILYGK--PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1358)
Q Consensus 659 -----~i~yv~Q~~~~~~~tv~eni~~g~--~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 731 (1358)
+++||||+|++|++|++|||.++. +.+++++.++++.|+++++++.+|+|.+|.+|++|.+||||||||++||
T Consensus 402 ~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLA 481 (571)
T TIGR02203 402 ASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIA 481 (571)
T ss_pred HHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHH
Confidence 499999999999999999999986 4889999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHHhcCch
Q 000674 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTA 811 (1358)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 811 (1358)
||++++|++++||||||+||+++++++.+.+.. ..+++|+|+|||+.+.++.||+|++|++|++++.|++++++++++.
T Consensus 482 Rall~~~~illLDEpts~LD~~~~~~i~~~L~~-~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~~ 560 (571)
T TIGR02203 482 RALLKDAPILILDEATSALDNESERLVQAALER-LMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGL 560 (571)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH-HhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCCH
Confidence 999999999999999999999999999876644 4578999999999999999999999999999999999999987777
Q ss_pred HHHHHH
Q 000674 812 FEQLVN 817 (1358)
Q Consensus 812 ~~~~~~ 817 (1358)
+.++.+
T Consensus 561 ~~~~~~ 566 (571)
T TIGR02203 561 YAQLHN 566 (571)
T ss_pred HHHHHH
Confidence 776654
No 20
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.8e-61 Score=612.54 Aligned_cols=538 Identities=18% Similarity=0.251 Sum_probs=407.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRG-EENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1358)
Q Consensus 271 l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~-~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ri 349 (1358)
..+.+++.++...++.++..++..+.|+++..+++..... ..+......++.++++..++..++.....+...+.+.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (592)
T PRK10790 17 YGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGV 96 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777888888889999999999888854322 111111112222233333444444444455667788888
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHH
Q 000674 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLF---GVVGLGALPGLV 425 (1358)
Q Consensus 350 r~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~-~~~~w~~plqi~~~~~~L~---~~lG~~~l~gl~ 425 (1358)
...+...+|+|.++.+.....+.++|+++|.++.|++++.+.... +..+....+.+++++.+++ +.+++..+++++
T Consensus 97 ~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~ 176 (592)
T PRK10790 97 VQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFP 176 (592)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999998776666788999999999999999875443 2233333333333333332 233333333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 000674 426 LFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY--G 503 (1358)
Q Consensus 426 v~~~~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~--~ 503 (1358)
++ +.+.....+..++..++..+..++-.+..+|.++|+++||.|+.|+.+.++..+..++..+...+.....+. .
T Consensus 177 i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (592)
T PRK10790 177 AV---LVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLR 253 (592)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 222334456666677777778888889999999999999999999999888877655433321111111111 1
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccc
Q 000674 504 TVIYWMSPTI-ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDD 582 (1358)
Q Consensus 504 ~~~~~~~p~~-v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~ 582 (1358)
.+.....-++ +.++.+.++ .. .+.++.+.++..+.++..+..|+..++.....+.+++.|.+||.++++.++.+...
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~-~~-~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~ 331 (592)
T PRK10790 254 PLLSLFSALILCGLLMLFGF-SA-SGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN 331 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HH-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC
Confidence 1111111111 111122233 22 36799999999999999999999999999999999999999999999765432111
Q ss_pred hhcccccCCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----
Q 000674 583 VRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---- 658 (1358)
Q Consensus 583 ~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g---- 658 (1358)
.. .....+.|+++|++|+|+++ .++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 332 -~~--~~~~~~~i~~~~v~f~y~~~--~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~ 406 (592)
T PRK10790 332 -DD--RPLQSGRIDIDNVSFAYRDD--NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLS 406 (592)
T ss_pred -Cc--cCCCCCeEEEEEEEEEeCCC--CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhh
Confidence 11 11234579999999999743 4799999999999999999999999999999999999999999999987
Q ss_pred ---------eEEEEeCCCCCCCCCHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000674 659 ---------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1358)
Q Consensus 659 ---------~i~yv~Q~~~~~~~tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 729 (1358)
+|+||||+|.+|++|++|||.++.+.++++..+++++++++++++.+|+|.+|.+|++|.+||||||||++
T Consensus 407 ~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRia 486 (592)
T PRK10790 407 SLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLA 486 (592)
T ss_pred hCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHH
Confidence 39999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHHhcC
Q 000674 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1358)
Q Consensus 730 LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1358)
||||++++|+|+|||||||+||+++++++.+.+. ...+++|+|+|||+++.++.+|+|++|++|++++.|+++|+++++
T Consensus 487 lARaLl~~~~illlDEpts~LD~~t~~~i~~~l~-~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~ 565 (592)
T PRK10790 487 LARVLVQTPQILILDEATANIDSGTEQAIQQALA-AVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ 565 (592)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHH-HHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999999999977654 344679999999999999999999999999999999999999998
Q ss_pred chHHHHHHhh
Q 000674 810 TAFEQLVNAH 819 (1358)
Q Consensus 810 ~~~~~~~~~~ 819 (1358)
+.|.++.+.+
T Consensus 566 ~~y~~l~~~~ 575 (592)
T PRK10790 566 GRYWQMYQLQ 575 (592)
T ss_pred CHHHHHHHHH
Confidence 8888887654
No 21
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.8e-61 Score=611.82 Aligned_cols=542 Identities=21% Similarity=0.269 Sum_probs=412.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 269 KVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNY-SNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGM 347 (1358)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~-~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 347 (1358)
+.+.+.+++.+.+..++.++..++.++.|+++..+++. +.+.+. ..-..+++.+++..++..+......+...+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (576)
T TIGR02204 10 WPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSS--GLLNRYFAFLLVVALVLALGTAARFYLVTWLGE 87 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566777777778888889999999999998886 322211 111112222222223333333344556678889
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHH---HHHhHHHHHH
Q 000674 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLF---GVVGLGALPG 423 (1358)
Q Consensus 348 rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~---~~lG~~~l~g 423 (1358)
++...+...+|+|.++.+.....+.+.|+++|.++.|++.+.++.. .+..+....+.+++++++++ +.+++.++++
T Consensus 88 ~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 167 (576)
T TIGR02204 88 RVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLA 167 (576)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999877655667889999999999999987643 33343444444444444443 3333333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 424 LVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYG 503 (1358)
Q Consensus 424 l~v~~~~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~ 503 (1358)
+++ ...+...+.+.+++..++.++..++..+...|.++|+++||.+++|+.+.++.++..++..+..++........
T Consensus 168 ~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (576)
T TIGR02204 168 VPL---VLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALL 244 (576)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 22223446777888888889999999999999999999999999999987777766555444333322221111
Q ss_pred HHHH-HHHHH-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcc
Q 000674 504 TVIY-WMSPT-IISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNND 581 (1358)
Q Consensus 504 ~~~~-~~~p~-~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~ 581 (1358)
..+. .+... .+....++++.+.. +.+|.+.+++...++..+..|+..++..+..+.+++++++||.+++..++..+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~g~~~v~~-g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 323 (576)
T TIGR02204 245 TAIVIVLVFGAIVGVLWVGAHDVIA-GKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKA 323 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCC
Confidence 1111 11111 12222233444444 789999999999999999999999999999999999999999999976432111
Q ss_pred chhccc-ccCCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--
Q 000674 582 DVRRIS-LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-- 658 (1358)
Q Consensus 582 ~~~~~~-~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-- 658 (1358)
...... ..+..+.|+++|++|+|+++.++++|+|+||++++||.++|+|+||||||||+++|+|+++|.+|+|.++|
T Consensus 324 ~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~ 403 (576)
T TIGR02204 324 PAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVD 403 (576)
T ss_pred CCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEE
Confidence 111111 11123569999999999864346799999999999999999999999999999999999999999999987
Q ss_pred -----------eEEEEeCCCCCCCCCHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHH
Q 000674 659 -----------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1358)
Q Consensus 659 -----------~i~yv~Q~~~~~~~tv~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 726 (1358)
.++|+||+|+++++|++|||.++.+ .++++..++++.+++.++++.+|+|.+|.+|++|.+|||||||
T Consensus 404 i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Q 483 (576)
T TIGR02204 404 LRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQ 483 (576)
T ss_pred HHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHH
Confidence 4999999999999999999999875 5678899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHH
Q 000674 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806 (1358)
Q Consensus 727 Rv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 806 (1358)
|++||||++++|++++||||||+||+++++.+++.+.. ..+++|+|+|||+++.++.+|+|++|++|++++.|+++++.
T Consensus 484 rl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~-~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 484 RIAIARAILKDAPILLLDEATSALDAESEQLVQQALET-LMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELI 562 (576)
T ss_pred HHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHH-HhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHH
Confidence 99999999999999999999999999999988776544 45789999999999999999999999999999999999999
Q ss_pred hcCchHHHHHH
Q 000674 807 LAGTAFEQLVN 817 (1358)
Q Consensus 807 ~~~~~~~~~~~ 817 (1358)
++++.|.++.+
T Consensus 563 ~~~~~~~~l~~ 573 (576)
T TIGR02204 563 AKGGLYARLAR 573 (576)
T ss_pred HcCChHHHHHh
Confidence 88877777653
No 22
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.4e-62 Score=611.34 Aligned_cols=537 Identities=23% Similarity=0.333 Sum_probs=401.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccCCCcchh-HH--HHHHH-HHHHHHHHHHHHHHHHHH-
Q 000674 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVN----YSNRGEENLQ-EG--LSIVG-CLIITKVVESFTQRHCFF- 340 (1358)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~----~~~~~~~~~~-~g--~~~~~-~l~~~~~~~~~~~~~~~~- 340 (1358)
-+++.-++++....+..+...+.+...|.+-..+.. |...+++... .. |.++. ++.+...+..+ .++|+|
T Consensus 654 ~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~-~q~~~f~ 732 (1228)
T KOG0055|consen 654 RIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNF-LQHYFFG 732 (1228)
T ss_pred HHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 445555566666666666667777778876544433 2222221111 11 22221 22222222222 344443
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHH-----HHHHHHHHHHHHHHHHHHHH
Q 000674 341 -GSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-----FHLTWSLALQLFLAIGVLFG 414 (1358)
Q Consensus 341 -~~~~~~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~-----~~~~w~~plqi~~~~~~L~~ 414 (1358)
.+.++..|+|......+.++...+.+.. +++ |.+.+.+++|+..+...+.. +..+-....-+++++++- |
T Consensus 733 ~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~--~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~-W 808 (1228)
T KOG0055|consen 733 IAGEKLTKRLRSMMFRALLRQEVGWFDDP--ENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYG-W 808 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccCCC--ccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 5678888888887777777776676653 456 99999999999876543321 222222222333333333 3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHH----HHHHHHHH
Q 000674 415 VVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLI----ESRREKEF 490 (1358)
Q Consensus 415 ~lG~~~l~gl~v~~~~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i----~~~R~~El 490 (1358)
.+++.+++-.+++++. .+...+.+.+..++.++..++-.++.+|++.|||+||.|+-|+.|.+.. +..++.+.
T Consensus 809 ~lalv~la~~Pll~~~---~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~ 885 (1228)
T KOG0055|consen 809 RLALVVLATFPLLILS---GYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSF 885 (1228)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444333 4445777888899999999999999999999999999999998875544 33333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 491 KWLSEAQLRKAYGTVIYWMSPTII-SSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRI 569 (1358)
Q Consensus 491 ~~l~~~~~~~~~~~~~~~~~p~~v-~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri 569 (1358)
+.-.......++.. +...++ ++..+.+..++.++..++..+|.++.++..-...+.+.....+.+..|+.|..+|
T Consensus 886 ~~~~i~gl~f~~sq----s~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~i 961 (1228)
T KOG0055|consen 886 KRGLISGLGFGFSQ----SLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSI 961 (1228)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 32222222222222 222222 2333445556666889999999998888777777777777778899999999999
Q ss_pred HHHhcccC-CCccchhcccccCCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc
Q 000674 570 NAFLLDHE-LNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP 648 (1358)
Q Consensus 570 ~~fL~~~e-~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~ 648 (1358)
.+.++.+. +++++......++-.+.|+++|++|+||.+++.++|+|+||++++|+.+|+|||+||||||.+.+|.+.|+
T Consensus 962 F~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd 1041 (1228)
T KOG0055|consen 962 FEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD 1041 (1228)
T ss_pred HHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 99998764 44432122223345678999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcC-------------eEEEEeCCCCCCCCCHHHHHhcC-CCCCHHHHHHHHHHhccHHHHhcCCCCCCcccc
Q 000674 649 KISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYG-KPMDKARYDKAIKACALDKDINNFDHGDLTEIG 714 (1358)
Q Consensus 649 ~~~G~i~~~g-------------~i~yv~Q~~~~~~~tv~eni~~g-~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig 714 (1358)
|++|.|.++| ++|.|+|+|.+|+.||||||++| ...++++..++++....++.+..||+|++|.+|
T Consensus 1042 p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vG 1121 (1228)
T KOG0055|consen 1042 PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVG 1121 (1228)
T ss_pred CCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccC
Confidence 9999999998 49999999999999999999999 346889999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCC
Q 000674 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGG 794 (1358)
Q Consensus 715 ~~g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G 794 (1358)
|+|.+||||||||||||||+.+||+||||||.|||||.++++- .++.++....|+|+|+|+|+++.+++||.|+|++||
T Consensus 1122 erG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErv-VQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G 1200 (1228)
T KOG0055|consen 1122 ERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERV-VQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNG 1200 (1228)
T ss_pred cccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHH-HHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECC
Confidence 9999999999999999999999999999999999999999875 467778888999999999999999999999999999
Q ss_pred eEEEecChHHHHhcCchHHHHHHhh
Q 000674 795 QITQSGNYQELLLAGTAFEQLVNAH 819 (1358)
Q Consensus 795 ~i~~~g~~~~l~~~~~~~~~~~~~~ 819 (1358)
+|+|+|+|++|++.++.|.+++..+
T Consensus 1201 ~VvE~GtH~~L~~~~G~Y~~Lv~~q 1225 (1228)
T KOG0055|consen 1201 KVVEQGTHDELLAKRGIYFRLVQLQ 1225 (1228)
T ss_pred EEEecccHHHHHhCCCchHHHhhhc
Confidence 9999999999999999999887544
No 23
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=5.4e-61 Score=603.61 Aligned_cols=540 Identities=21% Similarity=0.259 Sum_probs=403.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSN-RGEE--NLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGM 347 (1358)
Q Consensus 271 l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~-~~~~--~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 347 (1358)
+.+.+++.+++..++.++..++..+.|.++..+++-.- .+.. .....+..++++++..++..++.....+...+.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (574)
T PRK11160 10 LYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDATF 89 (574)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777788888888899999999998887431 1110 00111111222333334444444344456678888
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHH---HHHhHHHHHH
Q 000674 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLF---GVVGLGALPG 423 (1358)
Q Consensus 348 rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~-~~~~w~~plqi~~~~~~L~---~~lG~~~l~g 423 (1358)
++...+...+|+|.++++....++..+|++++.++.|++++.++... +..+....+.+++++++++ +.+++.++++
T Consensus 90 ~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~ 169 (574)
T PRK11160 90 RVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGI 169 (574)
T ss_pred HHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887767788999999999999999986543 4444444455554444443 3344433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 424 LVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYG 503 (1358)
Q Consensus 424 l~v~~~~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~ 503 (1358)
+++++++ +...+.+..++..++..+..++..+.+.|.++|+++||.|+.|+.+.++.++..++-.+.-.+.....+..
T Consensus 170 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (574)
T PRK11160 170 LLLLLLL--LPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLS 247 (574)
T ss_pred HHHHHHH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222222 22345666777788888888999999999999999999999999887777665544333222222222221
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcc
Q 000674 504 TV-IYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRS-MGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNND 581 (1358)
Q Consensus 504 ~~-~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~-l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~ 581 (1358)
.. ...+....+.++.+.+..++. +.++.+..++.+.+... ...|+..++..+..+.+++.|.+||.++++.++..+.
T Consensus 248 ~~~~~~~~~~~~~~i~~~g~~~~~-g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~ 326 (574)
T PRK11160 248 QALMILANGLTVVLMLWLAAGGVG-GNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTF 326 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 11 111112222222233333343 67788876665544433 3468888899999999999999999999976532111
Q ss_pred chhcccccCCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---
Q 000674 582 DVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--- 658 (1358)
Q Consensus 582 ~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--- 658 (1358)
. +........+.|+++|++|+|+++ ++++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 327 ~-~~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i 404 (574)
T PRK11160 327 P-TTSTAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPI 404 (574)
T ss_pred C-cccCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEh
Confidence 1 011111234579999999999753 34799999999999999999999999999999999999999999999987
Q ss_pred ----------eEEEEeCCCCCCCCCHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000674 659 ----------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1358)
Q Consensus 659 ----------~i~yv~Q~~~~~~~tv~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 727 (1358)
.|+||||+|+++++|++|||.++.+ .++++..++++.++++++++. |+|.+|.+||+|.+||||||||
T Consensus 405 ~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqR 483 (574)
T PRK11160 405 ADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRR 483 (574)
T ss_pred hhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHH
Confidence 3999999999999999999999875 678899999999999999999 9999999999999999999999
Q ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHHh
Q 000674 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL 807 (1358)
Q Consensus 728 v~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 807 (1358)
++||||++++|++++||||||+||+++++.+.+.+. ...+++|+|++||+++.++.||+|++|++|++++.|+++|+++
T Consensus 484 ialARall~~~~ililDE~ts~lD~~t~~~i~~~l~-~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 484 LGIARALLHDAPLLLLDEPTEGLDAETERQILELLA-EHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-HHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999999999999999999887654 3457899999999999999999999999999999999999999
Q ss_pred cCchHHHHHH
Q 000674 808 AGTAFEQLVN 817 (1358)
Q Consensus 808 ~~~~~~~~~~ 817 (1358)
+++.|.++.+
T Consensus 563 ~~g~y~~l~~ 572 (574)
T PRK11160 563 QQGRYYQLKQ 572 (574)
T ss_pred cCcHHHHHHh
Confidence 9888887753
No 24
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=2.1e-60 Score=601.93 Aligned_cols=534 Identities=18% Similarity=0.245 Sum_probs=403.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 272 TNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRS 351 (1358)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~ 351 (1358)
.+.+++.+.+..+..++..++..+.|+++..+++.+.... .... ++..+.+..++..+......+...++..++|.
T Consensus 14 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (588)
T PRK13657 14 LGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG-DIFP---LLAAWAGFGLFNIIAGVLVARHADRLAHRRRL 89 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777888888899999999998888654321 1111 11111111122222222223455677788888
Q ss_pred HHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHH
Q 000674 352 ALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLF---GVVGLGALPGLVLF 427 (1358)
Q Consensus 352 ~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~---~~lG~~~l~gl~v~ 427 (1358)
.+...+|+|.++++.....+.+.|++++.++.|++.+.+... .+.......+..++.+++++ +.+++..+++ +
T Consensus 90 ~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~---~ 166 (588)
T PRK13657 90 AVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVL---G 166 (588)
T ss_pred HHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 899999999999987766778899999999999999875432 22222222222222322222 2233333322 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 000674 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESR----REKEFKWLSEAQLRKAYG 503 (1358)
Q Consensus 428 ~~~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~----R~~El~~l~~~~~~~~~~ 503 (1358)
++...+...+.+..++.+++.++..++..+...|.++|+++||.|+.|+.+.++..+. ++.+.+..+.........
T Consensus 167 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (588)
T PRK13657 167 IVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLN 246 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333345566777888888889999999999999999999999999998776655443 333333222222111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccch
Q 000674 504 TVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV 583 (1358)
Q Consensus 504 ~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~ 583 (1358)
.+... ...+.+..++++.+.. +.+|.+.+++++.++..+..|+..+...+..+.+++.+++|+.+++..++..+...
T Consensus 247 ~~~~~--~~~~~~~~~g~~~v~~-g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~ 323 (588)
T PRK13657 247 RAAST--ITMLAILVLGAALVQK-GQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPP 323 (588)
T ss_pred HHHHH--HHHHHHHHHHHHHHHc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCC
Confidence 11111 1112233344444444 78999999999999999999999999999999999999999999987643221111
Q ss_pred hcccccCCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----
Q 000674 584 RRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----- 658 (1358)
Q Consensus 584 ~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g----- 658 (1358)
...+.+..++.|+++|++|+|+++ +++|+|+|+++++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 324 ~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~ 401 (588)
T PRK13657 324 GAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRT 401 (588)
T ss_pred CCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhh
Confidence 111111223469999999999743 4699999999999999999999999999999999999999999999987
Q ss_pred --------eEEEEeCCCCCCCCCHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000674 659 --------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1358)
Q Consensus 659 --------~i~yv~Q~~~~~~~tv~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 729 (1358)
.|+||||+|+++++|++|||.++.+ .++++..++++.+++++.++.+|+|.+|.+|++|.+||||||||++
T Consensus 402 ~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRia 481 (588)
T PRK13657 402 VTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLA 481 (588)
T ss_pred CCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHH
Confidence 5999999999999999999999964 6788899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHHhcC
Q 000674 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1358)
Q Consensus 730 LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1358)
||||++++|++++||||||+||+++++.+++.+.. ..+++|+|+|||+++.++.+|+|++|++|++.+.|+++++++.+
T Consensus 482 lARall~~~~iliLDEpts~LD~~t~~~i~~~l~~-~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~ 560 (588)
T PRK13657 482 IARALLKDPPILILDEATSALDVETEAKVKAALDE-LMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARG 560 (588)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH-HhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCC
Confidence 99999999999999999999999999999876644 34689999999999999999999999999999999999999888
Q ss_pred chHHHHHHh
Q 000674 810 TAFEQLVNA 818 (1358)
Q Consensus 810 ~~~~~~~~~ 818 (1358)
+.|.++.+.
T Consensus 561 ~~y~~l~~~ 569 (588)
T PRK13657 561 GRFAALLRA 569 (588)
T ss_pred ChHHHHHHH
Confidence 888887754
No 25
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=9.6e-61 Score=601.27 Aligned_cols=526 Identities=21% Similarity=0.268 Sum_probs=398.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 000674 287 LLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSS 366 (1358)
Q Consensus 287 ~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~~~iy~K~L~ls~ 366 (1358)
++..++..+.|+++..+++............+.+++.+++..++..++.....+...+.+.++...+...+|+|.++++.
T Consensus 5 ~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~ 84 (569)
T PRK10789 5 IIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHP 84 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 44556677889999998886533211112223334344444444444443334455667888888899999999999887
Q ss_pred ccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 367 LGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLG-ALPGLVLFLICGLLNVPFAKILQKC 444 (1358)
Q Consensus 367 ~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~-~l~gl~v~~~~~~l~~~~~~~~~~~ 444 (1358)
....+.++|+++|.++.|++.+.+... .+..++..++.+++++++++..++|. +++.++++.+.+.+...+.+..++.
T Consensus 85 ~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~ 164 (569)
T PRK10789 85 EFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHER 164 (569)
T ss_pred HHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677899999999999999976543 34555555555555544443334432 2333333333333344556667777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 445 QSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRRE----KEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFL 520 (1358)
Q Consensus 445 q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~----~El~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~ 520 (1358)
.++..+..++..+.++|.++|+++||.|++|+.+.++..+..+ .+.+..+...............+ .+..+.++
T Consensus 165 ~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~g 242 (569)
T PRK10789 165 FKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMA--NLLAIGGG 242 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 7777777888889999999999999999999987766655433 33322222111111111111111 11112223
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccchhcccccCCCCcEEEEee
Q 000674 521 GCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEG 600 (1358)
Q Consensus 521 ~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~ 600 (1358)
++. +.++.+|.+.+++.+.+...+..|+..++..+..+.+++++.+||.+++..++..+.. ....+..++.|+++|+
T Consensus 243 ~~l-v~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~--~~~~~~~~~~I~~~~v 319 (569)
T PRK10789 243 SWM-VVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDG--SEPVPEGRGELDVNIR 319 (569)
T ss_pred HHH-HHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC--CCCCCCCCCcEEEEEE
Confidence 333 3347899999999999999999999999999999999999999999999765322111 0111123457999999
Q ss_pred EEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEEEeCCC
Q 000674 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTS 667 (1358)
Q Consensus 601 ~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~i~yv~Q~~ 667 (1358)
+|+|+.+ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|+|
T Consensus 320 ~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 398 (569)
T PRK10789 320 QFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTP 398 (569)
T ss_pred EEECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCC
Confidence 9999854 35799999999999999999999999999999999999999999999987 389999999
Q ss_pred CCCCCCHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCC
Q 000674 668 WIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1358)
Q Consensus 668 ~~~~~tv~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep 746 (1358)
+++++|++|||.++.+ .++++++++++.+++++++..+|+|.+|.+|++|.+||||||||++||||++++|+++|||||
T Consensus 399 ~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEp 478 (569)
T PRK10789 399 FLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDA 478 (569)
T ss_pred eeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 9999999999999864 678889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHHhcCchHHHHHHhh
Q 000674 747 FSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAH 819 (1358)
Q Consensus 747 ~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 819 (1358)
||+||+++++++.+.+.. ..+++|+|++||+++.++.+|+|++|++|++++.|++++++++.+.|.++.+.+
T Consensus 479 ts~LD~~~~~~i~~~l~~-~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 550 (569)
T PRK10789 479 LSAVDGRTEHQILHNLRQ-WGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQ 550 (569)
T ss_pred cccCCHHHHHHHHHHHHH-HhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHh
Confidence 999999999999876644 457899999999999999999999999999999999999998888888877543
No 26
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=3.3e-60 Score=610.26 Aligned_cols=544 Identities=21% Similarity=0.232 Sum_probs=416.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1358)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ri 349 (1358)
..++.+++.+....+..++..++.++.|+++..+++.+-... +....+.+++++++..++..++.....+...+++.++
T Consensus 132 ~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~-~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (694)
T TIGR01846 132 PAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHR-GLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRI 210 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777778888888899999999999887553211 1122223333444444445555444455667788899
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000674 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1358)
Q Consensus 350 r~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~ 428 (1358)
...+...+|+|.++++....++.++|+++|.+ .|++.+.++.. .+.......+.+++.+++++..-++-+++.++.++
T Consensus 211 ~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~ 289 (694)
T TIGR01846 211 DVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLV 289 (694)
T ss_pred HHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987766778999999999 69999988643 22222222222333333444333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYW 508 (1358)
Q Consensus 429 ~~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~ 508 (1358)
+...+...+.+..++..++.++..+++.+.+.|.++|+++||.++.|+.+.++..+.-++..+...+.....+.......
T Consensus 290 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (694)
T TIGR01846 290 CYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIE 369 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455667777888888888999999999999999999999999988777766555444333332222222221111
Q ss_pred HHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccchhccc
Q 000674 509 MSP-TIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRIS 587 (1358)
Q Consensus 509 ~~p-~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~ 587 (1358)
... ....++.+.+..++..+.+|.+.+.+...+...+..|+..+...+..+.+++++++|+.++++.++..+.. ....
T Consensus 370 ~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~-~~~~ 448 (694)
T TIGR01846 370 LIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA-GLAA 448 (694)
T ss_pred HHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC-CCCC
Confidence 111 11122222333333347899999999999999999999999999999999999999999999765432211 1111
Q ss_pred ccCCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------
Q 000674 588 LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1358)
Q Consensus 588 ~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------- 658 (1358)
.+...+.|+++|++|+|+++ ++++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 449 ~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~ 527 (694)
T TIGR01846 449 LPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPA 527 (694)
T ss_pred CCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHH
Confidence 12234679999999999754 35699999999999999999999999999999999999999999999988
Q ss_pred ----eEEEEeCCCCCCCCCHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHH
Q 000674 659 ----SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1358)
Q Consensus 659 ----~i~yv~Q~~~~~~~tv~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARa 733 (1358)
+++||+|+|.++++|++|||.++.+ .++++..++++.+++++.++.+|+|.+|.+|++|.+||||||||++||||
T Consensus 528 ~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARa 607 (694)
T TIGR01846 528 WLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARA 607 (694)
T ss_pred HHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHH
Confidence 3899999999999999999999864 67888999999999999999999999999999999999999999999999
Q ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHHhcCchHH
Q 000674 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFE 813 (1358)
Q Consensus 734 l~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 813 (1358)
++++|+++|||||||+||+++++.+.+.+.. ..+++|+|++||+++.++.||+|++|++|++++.|++++++++++.|.
T Consensus 608 ll~~~~ililDEpts~LD~~~~~~i~~~l~~-~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~~~y~ 686 (694)
T TIGR01846 608 LVGNPRILIFDEATSALDYESEALIMRNMRE-ICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYA 686 (694)
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHH-HhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcCChHH
Confidence 9999999999999999999999999876644 357899999999999999999999999999999999999999888888
Q ss_pred HHHHh
Q 000674 814 QLVNA 818 (1358)
Q Consensus 814 ~~~~~ 818 (1358)
++.+.
T Consensus 687 ~l~~~ 691 (694)
T TIGR01846 687 RLWQQ 691 (694)
T ss_pred HHHHh
Confidence 87653
No 27
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.4e-60 Score=596.95 Aligned_cols=501 Identities=19% Similarity=0.242 Sum_probs=372.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 272 TNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRS 351 (1358)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~ 351 (1358)
.+.+++.++...++.++..++..+.|+++..+++........... +.++.++++..++..+......+...+.+.++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (529)
T TIGR02868 8 LQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPPVLYL-SVAAVAVRAFGIGRAVFRYLERLVGHDAALRSLG 86 (529)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667777788888888999999999988754322111110 1111111122233333333333455677888888
Q ss_pred HHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHH
Q 000674 352 ALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLF---GVVGLGALPGLVLF 427 (1358)
Q Consensus 352 ~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~-~~~~w~~plqi~~~~~~L~---~~lG~~~l~gl~v~ 427 (1358)
.+...+|+|.++++....++.++|+++|.++.|++++.+.... +..+....+.+++++++++ +.+++.++++++++
T Consensus 87 ~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~ 166 (529)
T TIGR02868 87 RLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLLA 166 (529)
T ss_pred HHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 8999999999999887777889999999999999999886543 3333444444444444443 33444433333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIY 507 (1358)
Q Consensus 428 ~~~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~ 507 (1358)
.++.+ ....+..++..++..+..++..+..+|.++|+++||.|++|+.+.++.++..++..+...+.....+....+.
T Consensus 167 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (529)
T TIGR02868 167 GFVAP--LVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQ 244 (529)
T ss_pred HHHHH--HHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 2223334555666778889999999999999999999999999988887766655444333333322222222
Q ss_pred HHHHHH-HHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccchhc
Q 000674 508 WMSPTI-ISSV-IFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRR 585 (1358)
Q Consensus 508 ~~~p~~-v~~~-~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~ 585 (1358)
.....+ ...+ .++++.+. ++.+|.+.+.+.+.+...+..|+..++..+..+.++++|.+|+.++++.++..++....
T Consensus 245 ~~~~~~~~~~~~~~g~~~~~-~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~ 323 (529)
T TIGR02868 245 LLAAGLAVLGALWAGGPAVA-DGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVP 323 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCC
Confidence 211111 1122 22333333 46899999888888888999999999999999999999999999999765432111000
Q ss_pred --ccccCCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----
Q 000674 586 --ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----- 658 (1358)
Q Consensus 586 --~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g----- 658 (1358)
.......+.|+++|++|+|+++ +++|+|+||++++||.++|+||+|||||||+++|+|+++|++|+|.++|
T Consensus 324 ~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~ 401 (529)
T TIGR02868 324 AAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSS 401 (529)
T ss_pred CCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhh
Confidence 0011123569999999999753 3699999999999999999999999999999999999999999999998
Q ss_pred -------eEEEEeCCCCCCCCCHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000674 659 -------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1358)
Q Consensus 659 -------~i~yv~Q~~~~~~~tv~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 730 (1358)
+||||||+|++|++||+|||.+|.+ .+++++.++++.++++++++.+|+|.+|.+||+|.+||||||||++|
T Consensus 402 ~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiai 481 (529)
T TIGR02868 402 LQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLAL 481 (529)
T ss_pred HHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHH
Confidence 7999999999999999999999865 68899999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCc
Q 000674 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV 779 (1358)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~ 779 (1358)
|||++++|+|++||||||+||+++++.|.+.+. ...+++|+|+|||++
T Consensus 482 ARall~~~~iliLDE~TSaLD~~te~~I~~~l~-~~~~~~TvIiItHrl 529 (529)
T TIGR02868 482 ARALLADAPILLLDEPTEHLDAGTESELLEDLL-AALSGKTVVVITHHL 529 (529)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-HhcCCCEEEEEecCC
Confidence 999999999999999999999999999987765 445789999999985
No 28
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.4e-60 Score=595.50 Aligned_cols=519 Identities=20% Similarity=0.229 Sum_probs=399.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALM 354 (1358)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~ 354 (1358)
+++.++...++.++..++..+.|+++..+++..-... +....+.+++.+++..++..++.....+...+.+.++...+.
T Consensus 4 ~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 82 (544)
T TIGR01842 4 NKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSG-SVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALN 82 (544)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777888888999999999999988543111 112222334444445555556555556677788999999999
Q ss_pred HHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHH--HHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHHH
Q 000674 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW--FHLTWSLALQLFLAI--GVLFGVVGLGALPGLVLFLIC 430 (1358)
Q Consensus 355 ~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~--~~~~w~~plqi~~~~--~~L~~~lG~~~l~gl~v~~~~ 430 (1358)
..+|+|.++++.. ..+...+.++.|++++.++... +..+...++.++.++ +.+.+.+++.+++++++++
T Consensus 83 ~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~-- 155 (544)
T TIGR01842 83 QPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLLVCFLLHPWIGILALGGAVVLV-- 155 (544)
T ss_pred HHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--
Confidence 9999999998752 2355677788999999876432 333334444333322 2222445544444433332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 431 GLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMS 510 (1358)
Q Consensus 431 ~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~ 510 (1358)
.+...+.+..++..++.++..+++.+.++|.++|+++||.|++|+.+.++.++..++..+...+.....+....+....
T Consensus 156 -~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (544)
T TIGR01842 156 -GLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYF 234 (544)
T ss_pred -HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333456677777888899999999999999999999999999999988887766665544433333222222221111
Q ss_pred HHH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccchhcccc
Q 000674 511 PTI--ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISL 588 (1358)
Q Consensus 511 p~~--v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~~ 588 (1358)
..+ +.++.++++... ++.+|++.+++.+.++..+..|+..++..+..+.+++.|.+|+.++++.++..+.. .+.
T Consensus 235 ~~~~~~~~~~~g~~l~~-~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~ 310 (544)
T TIGR01842 235 RIVLQSLVLGLGAYLAI-DGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA---MPL 310 (544)
T ss_pred HHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC---CCC
Confidence 111 122233444333 47899999999999999999999999999999999999999999999765432211 111
Q ss_pred cCCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------
Q 000674 589 QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------- 658 (1358)
Q Consensus 589 ~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g---------- 658 (1358)
+..++.++++|++|+|+++ ++++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 311 ~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~ 389 (544)
T TIGR01842 311 PEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRET 389 (544)
T ss_pred CCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHH
Confidence 2233579999999999753 35799999999999999999999999999999999999999999999987
Q ss_pred ---eEEEEeCCCCCCCCCHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000674 659 ---SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1358)
Q Consensus 659 ---~i~yv~Q~~~~~~~tv~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal 734 (1358)
.++||||+|+++++|++|||.++.+ .+++++.++++.+++++.++.+|+|.+|.+|++|.+||||||||++||||+
T Consensus 390 ~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARal 469 (544)
T TIGR01842 390 FGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARAL 469 (544)
T ss_pred HhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHH
Confidence 4999999999999999999986654 778889999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHHh
Q 000674 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL 807 (1358)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 807 (1358)
+++|+++|||||||+||+++++.+.+.+.....+++|+|++||+++.+..||+|++|++|++++.|+++++++
T Consensus 470 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 470 YGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred hcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999999988765544346899999999999988899999999999999999999864
No 29
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=5.8e-60 Score=595.35 Aligned_cols=533 Identities=25% Similarity=0.335 Sum_probs=404.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALM 354 (1358)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~ 354 (1358)
++ .+....++.++..++....|.++..+++..... ......+...+++..++..++.....+...+.+.++...+.
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr 88 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD---LGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLR 88 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56 677777888888899999999999888765411 11111112222222223333333344455566688888888
Q ss_pred HHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHH
Q 000674 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWF-HLTWSLALQLFLAIGVLF---GVVGLGALPGLVLFLIC 430 (1358)
Q Consensus 355 ~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~~-~~~w~~plqi~~~~~~L~---~~lG~~~l~gl~v~~~~ 430 (1358)
..+|+|.++++....++...|++++.++.|++.+....... ..+-.+++.++..+++++ +.+++..+.+++++.
T Consensus 89 ~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~-- 166 (567)
T COG1132 89 RDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLA-- 166 (567)
T ss_pred HHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--
Confidence 89999999998776677789999999999999998866543 222223333333333333 233333333322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000674 431 GLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYG-TVIYWM 509 (1358)
Q Consensus 431 ~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~-~~~~~~ 509 (1358)
.+...+.++.++..++..+..++..+.+.|.++|+++||.|+.|+...++..+..++..+.-.+.....+.. ......
T Consensus 167 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (567)
T COG1132 167 -LVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLL 245 (567)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222334555577788888888999999999999999999999998775555444433332211111111111 111122
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccchhccccc
Q 000674 510 SPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQ 589 (1358)
Q Consensus 510 ~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~~~ 589 (1358)
..+....+.+.+......+.++.+.+.+.+.+...+..|+..+...+..+.++..|.+|+.++++.++.-.+.... ..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~--~~ 323 (567)
T COG1132 246 SSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP--LK 323 (567)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC--CC
Confidence 2222222233333333336799999999999999999999999999999999999999999999875432111110 12
Q ss_pred CCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------
Q 000674 590 KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------- 658 (1358)
Q Consensus 590 ~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g----------- 658 (1358)
...+.|+++|++|+|++ ++++|+|+||++++||.+|||||+|||||||+++|+|+++|++|+|.++|
T Consensus 324 ~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~l 401 (567)
T COG1132 324 DTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSL 401 (567)
T ss_pred CCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHH
Confidence 34467999999999985 35799999999999999999999999999999999999999999999987
Q ss_pred --eEEEEeCCCCCCCCCHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHh
Q 000674 659 --SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1358)
Q Consensus 659 --~i~yv~Q~~~~~~~tv~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~ 735 (1358)
+||||||+|++|++||+|||.+|++ .++++..++++.+++++.++.+|+|.+|.+||+|.+||||||||++||||++
T Consensus 402 r~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall 481 (567)
T COG1132 402 RKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALL 481 (567)
T ss_pred HHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHh
Confidence 4999999999999999999999988 5888999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHHhcCchHHHH
Q 000674 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815 (1358)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 815 (1358)
+||+|++||||||+||+++++.|.+.+. ...++||+|+|+|+++.+.+||+|+||++|+|++.|+|+|++++++.|.++
T Consensus 482 ~~~~ILILDEaTSalD~~tE~~I~~~l~-~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l 560 (567)
T COG1132 482 RNPPILILDEATSALDTETEALIQDALK-KLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARL 560 (567)
T ss_pred cCCCEEEEeccccccCHHhHHHHHHHHH-HHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHH
Confidence 9999999999999999999999987765 334788999999999999999999999999999999999999999999988
Q ss_pred HHhh
Q 000674 816 VNAH 819 (1358)
Q Consensus 816 ~~~~ 819 (1358)
.+.+
T Consensus 561 ~~~~ 564 (567)
T COG1132 561 YQAQ 564 (567)
T ss_pred HHHh
Confidence 7654
No 30
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=5.9e-59 Score=585.85 Aligned_cols=535 Identities=18% Similarity=0.243 Sum_probs=403.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 272 TNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRS 351 (1358)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~ 351 (1358)
++.+++.++...++.++..++..+.|+++..+++.+..... . ..++..+++..++..+......+...++..++|.
T Consensus 14 l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (585)
T TIGR01192 14 LNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD-V---LPTLALWAGFGVFNTIAYVLVAREADRLAHGRRA 89 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777778888888899999999999999886533221 1 1111111112222333322233456678888899
Q ss_pred HHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHH
Q 000674 352 ALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFG---VVGLGALPGLVLF 427 (1358)
Q Consensus 352 ~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~~---~lG~~~l~gl~v~ 427 (1358)
.+...+|+|.++++....++.++|++++.++.|++.+.++.. .+.......+.+++++++++. .+++.+++ ++
T Consensus 90 ~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~---~~ 166 (585)
T TIGR01192 90 TLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMV---LG 166 (585)
T ss_pred HHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 899999999999987766677899999999999999886543 233334444444444343332 33333322 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 000674 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREK----EFKWLSEAQLRKAYG 503 (1358)
Q Consensus 428 ~~~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~----El~~l~~~~~~~~~~ 503 (1358)
.+...+...+.+..++.+++..+..++..+.+.|.++|+++||.|+.|+.+.++.++..++ +.+..+.........
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (585)
T TIGR01192 167 ILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLN 246 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223334456677777778888888899999999999999999999998877666554433 222222211111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccch
Q 000674 504 TVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV 583 (1358)
Q Consensus 504 ~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~ 583 (1358)
.++..... +.+..++++.+. ++.++.+.+++.+.++..+..|+..++..+..+.+++.+++|+.++++.++..++..
T Consensus 247 ~~~~~~~~--~~v~~~g~~~v~-~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~ 323 (585)
T TIGR01192 247 RMASTISM--MCILVIGTVLVI-KGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPA 323 (585)
T ss_pred HHHHHHHH--HHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCc
Confidence 11111111 122223333333 478999999999999999999999999999999999999999999987643221111
Q ss_pred hcccccCCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----
Q 000674 584 RRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----- 658 (1358)
Q Consensus 584 ~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g----- 658 (1358)
.....+...+.++++|++|+|+++ +++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 324 ~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~ 401 (585)
T TIGR01192 324 DAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINT 401 (585)
T ss_pred cCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhh
Confidence 111111223469999999999753 3689999999999999999999999999999999999999999999987
Q ss_pred --------eEEEEeCCCCCCCCCHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000674 659 --------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1358)
Q Consensus 659 --------~i~yv~Q~~~~~~~tv~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 729 (1358)
.++||||+|+++++|++|||.++.+ .++++..++++.+++++.+..+|+|.+|.+|++|.+||||||||++
T Consensus 402 ~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~ 481 (585)
T TIGR01192 402 VTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLA 481 (585)
T ss_pred CCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHH
Confidence 4899999999999999999999864 5677788899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHHhcC
Q 000674 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1358)
Q Consensus 730 LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1358)
||||++++|++++||||||+||+++++.+.+.+. ...+++|+|+|||+++.++.||+|++|++|++++.|+++++++++
T Consensus 482 lARall~~p~ililDEpts~LD~~~~~~i~~~l~-~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 560 (585)
T TIGR01192 482 IARAILKNAPILVLDEATSALDVETEARVKNAID-ALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKD 560 (585)
T ss_pred HHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHH-HHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCC
Confidence 9999999999999999999999999999876654 445689999999999999999999999999999999999999988
Q ss_pred chHHHHHHhh
Q 000674 810 TAFEQLVNAH 819 (1358)
Q Consensus 810 ~~~~~~~~~~ 819 (1358)
+.|.++.+.+
T Consensus 561 ~~y~~l~~~~ 570 (585)
T TIGR01192 561 GRFYKLLRRS 570 (585)
T ss_pred ChHHHHHHhC
Confidence 8888877543
No 31
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-59 Score=548.39 Aligned_cols=527 Identities=23% Similarity=0.297 Sum_probs=406.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 283 AICALLRTIAVVVGPLLLYAFVN-YSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQ 361 (1358)
Q Consensus 283 ~~~~~~~~~~~~~~P~ll~~~i~-~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~~~iy~K~ 361 (1358)
.++.++..++...+-.++-..++ .+... ....-+.++++++++.++.+++...--...++.+.++|..+...+++|.
T Consensus 6 ~ll~~l~~i~~i~qa~llA~~l~~l~~~~--~~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l 83 (559)
T COG4988 6 ALLAVLSGIAIIAQAALLADILTKLIEGQ--LFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKL 83 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544443 22221 1222234455566666677776655556778999999999999999999
Q ss_pred hcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000674 362 LKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF----WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPF 437 (1358)
Q Consensus 362 L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~----~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~~~~~l~~~~ 437 (1358)
.++....-+...+|+++++++.-++.+..+.. .....-..|+-+++++++..|.-|.-.+..++.+.+++ +.+
T Consensus 84 ~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfM---ilv 160 (559)
T COG4988 84 AKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFM---ILV 160 (559)
T ss_pred HhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHH
Confidence 99998777778899999999998988776433 22333345666666666666655554444443333333 224
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 438 AKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLI----ESRREKEFKWLSEAQLRKAYGTVIYWMSPTI 513 (1358)
Q Consensus 438 ~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i----~~~R~~El~~l~~~~~~~~~~~~~~~~~p~~ 513 (1358)
++..++..+++++.-..=-..-=+-|+|+.++|.|+-.+...++| ++.|+.-|+.||-.....++.-++...+-
T Consensus 161 g~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsi-- 238 (559)
T COG4988 161 GLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSI-- 238 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 566666666777666666666778889999999999876555554 66888888888765544444333332222
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccchhc-ccccCCC
Q 000674 514 ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRR-ISLQKSD 592 (1358)
Q Consensus 514 v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~-~~~~~~~ 592 (1358)
..++.+.+..+.+.++++-..+|.+|.+---.-.|++.+......-.++..+.+.+..|+..+..+...... .....+.
T Consensus 239 AlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~ 318 (559)
T COG4988 239 ALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPP 318 (559)
T ss_pred HHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCC
Confidence 222334455555524888888888888877777899999999999999999999999999887654432211 1122233
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------e
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~ 659 (1358)
..+..+|.+|.|+++ +++++|+||++++|++++|+|+||||||||+++|+|+.+|++|+|.++| +
T Consensus 319 ~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~ 396 (559)
T COG4988 319 IEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQ 396 (559)
T ss_pred ceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhH
Confidence 445566999999865 3899999999999999999999999999999999999999999999997 4
Q ss_pred EEEEeCCCCCCCCCHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000674 660 IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1358)
Q Consensus 660 i~yv~Q~~~~~~~tv~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~ 738 (1358)
++||+|+|.++.+|+||||.++++ .+++...++++..++.+.++. |+|-+|.|||+|.+|||||+|||+||||+++++
T Consensus 397 i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~ 475 (559)
T COG4988 397 ISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPA 475 (559)
T ss_pred eeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999987 568899999999999999999 999999999999999999999999999999999
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHHhcCchHHHHHHh
Q 000674 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818 (1358)
Q Consensus 739 ~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 818 (1358)
++||+||||++||+++++.|.+.+ ....++||+|++||+++.+..+|+|++|++|+++++|+|+++.++++.|.+++.+
T Consensus 476 ~l~llDEpTA~LD~etE~~i~~~l-~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~ 554 (559)
T COG4988 476 SLLLLDEPTAHLDAETEQIILQAL-QELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQ 554 (559)
T ss_pred CEEEecCCccCCCHhHHHHHHHHH-HHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHH
Confidence 999999999999999999887654 4455679999999999999999999999999999999999999999999999876
Q ss_pred hh
Q 000674 819 HR 820 (1358)
Q Consensus 819 ~~ 820 (1358)
+.
T Consensus 555 q~ 556 (559)
T COG4988 555 QE 556 (559)
T ss_pred Hh
Confidence 53
No 32
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=3e-59 Score=584.88 Aligned_cols=508 Identities=21% Similarity=0.260 Sum_probs=385.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 276 LKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMV 355 (1358)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~~ 355 (1358)
++.++...++.++..++..+.|+++..+++....+......-+.+++++++..++..++.....+...+++.++...+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 81 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRE 81 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677788888889999999999999865211111122222333344444445555444456677788888888899
Q ss_pred HHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHH
Q 000674 356 AVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLF---GVVGLGALPGLVLFLICG 431 (1358)
Q Consensus 356 ~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~---~~lG~~~l~gl~v~~~~~ 431 (1358)
.+|+|.++++....++.++|+++|.++.|++++.++.. .+..+....+.+++++++++ +.+++..+++++++++
T Consensus 82 ~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~-- 159 (529)
T TIGR02857 82 RLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPI-- 159 (529)
T ss_pred HHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--
Confidence 99999999877666778999999999999999987654 35555555555554444443 3444444333322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 432 LLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSP 511 (1358)
Q Consensus 432 ~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~p 511 (1358)
+...+.+..++..++.++..+++.+.+.|.++|+++||.|++|+.+.++.++.-++..+...+..........+.....
T Consensus 160 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (529)
T TIGR02857 160 -FMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFA 238 (529)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234566777777888889999999999999999999999999988777765443322221111111111111111111
Q ss_pred HHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccchhccccc
Q 000674 512 TII--SSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQ 589 (1358)
Q Consensus 512 ~~v--~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~~~ 589 (1358)
.+. ....++++.+. .+.+|.+.+++.+.+...+..|+..+...+..+.+++++++|+.++++.++.+.... . ...
T Consensus 239 ~~~~~~~~~~~~~~~~-~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~-~-~~~ 315 (529)
T TIGR02857 239 TLSVALVAVYIGFRLL-AGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA-P-VTA 315 (529)
T ss_pred HHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc-C-CCC
Confidence 111 11223444444 468999999999999999999999999999999999999999999997543221111 1 111
Q ss_pred CCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------
Q 000674 590 KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------- 658 (1358)
Q Consensus 590 ~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g----------- 658 (1358)
...+.|+++|++|+|+++ ++++|+|+|+++++||.++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 316 ~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~l 394 (529)
T TIGR02857 316 APAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSW 394 (529)
T ss_pred CCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHH
Confidence 123479999999999854 35799999999999999999999999999999999999999999999987
Q ss_pred --eEEEEeCCCCCCCCCHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHh
Q 000674 659 --SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1358)
Q Consensus 659 --~i~yv~Q~~~~~~~tv~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~ 735 (1358)
+++||+|+|+++++|++|||.++.+ .++++..++++.++++++++.+|+|.+|.+|++|.+||||||||++||||++
T Consensus 395 r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~ 474 (529)
T TIGR02857 395 RDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFL 474 (529)
T ss_pred HhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHh
Confidence 3999999999999999999999865 5778899999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEE
Q 000674 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVL 791 (1358)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l 791 (1358)
++|++++||||||+||+++++.+++.+.. ..+++|+|+|||+++.++.||+|++|
T Consensus 475 ~~~~ililDE~ts~lD~~~~~~i~~~l~~-~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 475 RDAPLLLLDEPTAHLDAETEALVTEALRA-LAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHHHHH-hcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 99999999999999999999999876644 45789999999999999999999975
No 33
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.5e-58 Score=623.85 Aligned_cols=543 Identities=19% Similarity=0.205 Sum_probs=383.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 273 NVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSA 352 (1358)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~ 352 (1358)
+.+++.++++.++.++..++..+.|+++..+++-+-........+..+++.+++..++..++.....|...+++.++-..
T Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~ 900 (1466)
T PTZ00265 821 FSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKT 900 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455577777777778888888888888887633221110111222222223333333333322334456677777777
Q ss_pred HHHHHHHHHhcCCcccC--CCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000674 353 LMVAVYQKQLKLSSLGR--KKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1358)
Q Consensus 353 l~~~iy~K~L~ls~~~~--~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~~ 429 (1358)
+...+|+|.++.+..-. .++++|++++.++.|++.+.++.. .+..+...++.+++++++++. +.|. .+++++++
T Consensus 901 lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~-~~~~--l~l~~~~~ 977 (1466)
T PTZ00265 901 MKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFY-FCPI--VAAVLTGT 977 (1466)
T ss_pred HHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHH
Confidence 77788888888775433 357899999999999999987543 233333334444444443332 1221 11111111
Q ss_pred HHHHHHHHHHHHHHH-HHHH-----------------HHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHH
Q 000674 430 CGLLNVPFAKILQKC-QSEF-----------------MIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFK 491 (1358)
Q Consensus 430 ~~~l~~~~~~~~~~~-q~~~-----------------m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~ 491 (1358)
...+...+.+..+.. .++. .+..++....++|.++|||+||.|+-|+.+.++..+.-+...+
T Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~ 1057 (1466)
T PTZ00265 978 YFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNK 1057 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 111112222222211 1111 1112344678999999999999999999998887665544333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 492 WLSEAQLRKAYGTVIYWMSPTI-ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRIN 570 (1358)
Q Consensus 492 ~l~~~~~~~~~~~~~~~~~p~~-v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~ 570 (1358)
..++.....+....+..+...+ ..++.+.+..++..+.++.+.++.++..+.....++..+...+..+.+++++.+|+.
T Consensus 1058 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~ 1137 (1466)
T PTZ00265 1058 GQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYY 1137 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222222222211111111111 222233333444447899999888876665555678888899999999999999999
Q ss_pred HHhcccC-CCccchhccc---ccCCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCC
Q 000674 571 AFLLDHE-LNNDDVRRIS---LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE 646 (1358)
Q Consensus 571 ~fL~~~e-~~~~~~~~~~---~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~ 646 (1358)
+++..++ .+........ ++...+.|+++|++|+|+.+++.++|+|+||+|++|+.+|||||+|||||||+++|+|+
T Consensus 1138 ~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ 1217 (1466)
T PTZ00265 1138 PLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRF 1217 (1466)
T ss_pred HHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 9997542 2111101111 11234579999999999865556899999999999999999999999999999999999
Q ss_pred ccC------------------------------------------------------CCcEEEEcC-------------e
Q 000674 647 IPK------------------------------------------------------ISGTVNLYG-------------S 659 (1358)
Q Consensus 647 ~~~------------------------------------------------------~~G~i~~~g-------------~ 659 (1358)
++| ++|+|.++| +
T Consensus 1218 ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~ 1297 (1466)
T PTZ00265 1218 YDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNL 1297 (1466)
T ss_pred CCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhh
Confidence 998 699999988 4
Q ss_pred EEEEeCCCCCCCCCHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000674 660 IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1358)
Q Consensus 660 i~yv~Q~~~~~~~tv~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~ 738 (1358)
||||+|+|.+|++||+|||.+|.+ ..++..+++++.+++++.+..||+|.+|.||++|.+|||||||||+||||++++|
T Consensus 1298 i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p 1377 (1466)
T PTZ00265 1298 FSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREP 1377 (1466)
T ss_pred ccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999965 6788899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHhHh-cCCcEEEEEcCCcchhhccCeEEEEeC----CeEE-EecChHHHHh-cCch
Q 000674 739 DIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRILVLEG----GQIT-QSGNYQELLL-AGTA 811 (1358)
Q Consensus 739 ~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~----G~i~-~~g~~~~l~~-~~~~ 811 (1358)
+||||||||||||+++++.|.+.+.... .+++|+|+|||+++.++.||+|++|++ |+++ ++|+|+||++ .++.
T Consensus 1378 ~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~ 1457 (1466)
T PTZ00265 1378 KILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGV 1457 (1466)
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCCh
Confidence 9999999999999999999877654443 368999999999999999999999999 9955 8999999998 4788
Q ss_pred HHHHHHh
Q 000674 812 FEQLVNA 818 (1358)
Q Consensus 812 ~~~~~~~ 818 (1358)
|.++++.
T Consensus 1458 Y~~l~~~ 1464 (1466)
T PTZ00265 1458 YKKYVKL 1464 (1466)
T ss_pred HHHHHhh
Confidence 8887653
No 34
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=6.1e-57 Score=615.38 Aligned_cols=471 Identities=17% Similarity=0.194 Sum_probs=357.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000674 344 RSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALP 422 (1358)
Q Consensus 344 ~~~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l~ 422 (1358)
..+.+.-..+-..+|++.++.+..-.++..+|+|+|.++.|++.+.+.+. .+..+...++.++.++++++..-.+.+++
T Consensus 1031 ~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~ 1110 (1522)
T TIGR00957 1031 IGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVI 1110 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566677777665555567899999999999999988544 34455556666666655554332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 423 GLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY 502 (1358)
Q Consensus 423 gl~v~~~~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~ 502 (1358)
.++++++...+...+.+..+..++.....++...+..+|.++|+++||.|+||+.|.++..+.-+...+...........
T Consensus 1111 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 1190 (1522)
T TIGR00957 1111 IPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRW 1190 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222333333344444445556677788999999999999999999999887766555544332221111111
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcc
Q 000674 503 GTV-IYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNND 581 (1358)
Q Consensus 503 ~~~-~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~ 581 (1358)
... +......+ ++..+.+.+...+.++++.+..++.+...+..|+..+......+.++.+|.+|+.+|++.++.++.
T Consensus 1191 ~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~ 1268 (1522)
T TIGR00957 1191 LAVRLECVGNCI--VLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPW 1268 (1522)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Confidence 111 11111111 111122223333678999998888888899999999999999999999999999999965432211
Q ss_pred chhc-cccc--CCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC
Q 000674 582 DVRR-ISLQ--KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG 658 (1358)
Q Consensus 582 ~~~~-~~~~--~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g 658 (1358)
..+. .+++ +.++.|+++|++|+|+++. .++|+|+||+|++||.+||||++|||||||+++|+|+++|++|+|.++|
T Consensus 1269 ~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~-~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG 1347 (1522)
T TIGR00957 1269 QIQETAPPSGWPPRGRVEFRNYCLRYREDL-DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDG 1347 (1522)
T ss_pred cccCCCCCCCCCCCCcEEEEEEEEEeCCCC-cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECC
Confidence 1111 1111 2456899999999998653 4799999999999999999999999999999999999999999999998
Q ss_pred -------------eEEEEeCCCCCCCCCHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHH
Q 000674 659 -------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1358)
Q Consensus 659 -------------~i~yv~Q~~~~~~~tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 725 (1358)
+++||||+|.+|++||||||....++++++..++++.|++++.++.+|+|.+|++||+|.+||||||
T Consensus 1348 ~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQr 1427 (1522)
T TIGR00957 1348 LNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQR 1427 (1522)
T ss_pred EEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHH
Confidence 4999999999999999999984336888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHH
Q 000674 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQEL 805 (1358)
Q Consensus 726 qRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l 805 (1358)
||++||||++++|+|+|||||||+||+++.+.|.+. ++...+++|+|+|+|+++.+..+|+|+||++|+|+|.|+|+|+
T Consensus 1428 Qrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~-l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eL 1506 (1522)
T TIGR00957 1428 QLVCLARALLRKTKILVLDEATAAVDLETDNLIQST-IRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNL 1506 (1522)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999887654 4555678999999999999999999999999999999999999
Q ss_pred HhcCchHHHHHHh
Q 000674 806 LLAGTAFEQLVNA 818 (1358)
Q Consensus 806 ~~~~~~~~~~~~~ 818 (1358)
+++++.|.++.++
T Consensus 1507 l~~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1507 LQQRGIFYSMAKD 1519 (1522)
T ss_pred HhCCCHHHHHHHH
Confidence 9988888888754
No 35
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-57 Score=521.00 Aligned_cols=520 Identities=23% Similarity=0.289 Sum_probs=393.8
Q ss_pred HHHHHHHHHHHHHHHHhccCCC-cc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 000674 290 TIAVVVGPLLLYAFVNYSNRGE-EN--LQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSS 366 (1358)
Q Consensus 290 ~~~~~~~P~ll~~~i~~~~~~~-~~--~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~~~iy~K~L~ls~ 366 (1358)
-.+....|++.+..++-+++.+ .+ .......+.+.++..+..+++.-.-.+....+..++-.....-+|+..+.++-
T Consensus 43 K~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~ 122 (591)
T KOG0057|consen 43 KILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDL 122 (591)
T ss_pred hHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4566778999998888775221 11 11122333444555555555543334444556666666677788888888776
Q ss_pred ccCCCCCHHHHHHHHHhHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 000674 367 LGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALP-GLVLFLICGLLNVPFAKILQKC 444 (1358)
Q Consensus 367 ~~~~~~~~G~ivNlms~D~~~i~~~~~~-~~~~w~~plqi~~~~~~L~~~lG~~~l~-gl~v~~~~~~l~~~~~~~~~~~ 444 (1358)
....+..+|++.+.|.--...|.+++.. +..+.-..+++.+....++...|++..+ .+..+.....+...+..+-.++
T Consensus 123 ~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~f 202 (591)
T KOG0057|consen 123 SFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRF 202 (591)
T ss_pred HhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHH
Confidence 6656678899999998777777775442 3344445577888888899999975432 2222333333444566777889
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHH-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 000674 445 QSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIE-SRREKEFKWLSEAQLR---KAYGTVIYWMSPTIISSVIFL 520 (1358)
Q Consensus 445 q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~-~~R~~El~~l~~~~~~---~~~~~~~~~~~p~~v~~~~f~ 520 (1358)
+++..++.|+..+.+-+.|.|-.+||.|+-|+.-.++.. .+++.|-..++-.+.. ......++. .| .+.+.|.
T Consensus 203 R~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFs-v~--~~~im~l 279 (591)
T KOG0057|consen 203 RKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFS-VA--LTFIMVL 279 (591)
T ss_pred HHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHH-HH--HHHHHHH
Confidence 999999999999999999999999999999987665553 3444443332222211 111111211 11 1222222
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccchhcccccCCCCcEEEEee
Q 000674 521 GCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEG 600 (1358)
Q Consensus 521 ~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~ 600 (1358)
+..-+....+|.+.....-+++..|+.|+..|......+.|+.+-++-....+..++... ....+....++.|+|+|+
T Consensus 280 ~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~--~~~~~i~~~~~~I~F~dV 357 (591)
T KOG0057|consen 280 GSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQ--EAALPIELFGGSIEFDDV 357 (591)
T ss_pred HhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhh--hccCCcccCCCcEEEEee
Confidence 222122357899998889999999999999999999999998887766554333222111 101223334567999999
Q ss_pred EEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEEEeCCC
Q 000674 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTS 667 (1358)
Q Consensus 601 ~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~i~yv~Q~~ 667 (1358)
+|+|+++ +++|+++||+|++||.+||+|+|||||||++++|+++.+ .+|+|.++| .||||||+.
T Consensus 358 ~f~y~~k--~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~ 434 (591)
T KOG0057|consen 358 HFSYGPK--RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDS 434 (591)
T ss_pred EEEeCCC--CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcc
Confidence 9999864 569999999999999999999999999999999999999 999999998 399999999
Q ss_pred CCCCCCHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCC
Q 000674 668 WIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1358)
Q Consensus 668 ~~~~~tv~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep 746 (1358)
.+||.||.+||.+|.+ ...++..++++..++++-+..+|+|++|.+||+|..|||||||||+||||+..||+|+++|||
T Consensus 435 ~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEa 514 (591)
T KOG0057|consen 435 VLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEA 514 (591)
T ss_pred cccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCc
Confidence 9999999999999987 456777788889999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHHhcCchHHHHHHh
Q 000674 747 FSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818 (1358)
Q Consensus 747 ~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 818 (1358)
||+||.++++.|++.+.. ...+||+|+|-|+++.++++|+|+++++|++.+.|+++|++...+.+.++...
T Consensus 515 TS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~~ 585 (591)
T KOG0057|consen 515 TSALDSETEREILDMIMD-VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTT 585 (591)
T ss_pred ccccchhhHHHHHHHHHH-hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhcc
Confidence 999999999999987654 67899999999999999999999999999999999999999977777777643
No 36
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.9e-56 Score=605.87 Aligned_cols=472 Identities=19% Similarity=0.242 Sum_probs=343.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000674 343 RRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGAL 421 (1358)
Q Consensus 343 ~~~~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l 421 (1358)
.+.+.+.-..+...+|++.++.+..-.++..+|+|+|.++.|++.+.+... .+..+....++++.+++++.....+..+
T Consensus 978 ~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~ 1057 (1622)
T PLN03130 978 IMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLW 1057 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566667777777766555678899999999999999987543 3445555555555554444332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 422 PGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKA 501 (1358)
Q Consensus 422 ~gl~v~~~~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~ 501 (1358)
+.+++++++..+.....+..++.++..+..+....+..+|.++|+++||.|++|+.|.+...+..+...+..........
T Consensus 1058 ~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 1137 (1622)
T PLN03130 1058 AIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNR 1137 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222233333444444455566677789999999999999999998887766555544332211111111
Q ss_pred HHHHHHHHHHHHHHHHH-HHH-HHHhCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000674 502 YGTVIYWMSPTIISSVI-FLG-CALTGSAPLN-----ASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLL 574 (1358)
Q Consensus 502 ~~~~~~~~~p~~v~~~~-f~~-~~l~~~~~Lt-----~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~ 574 (1358)
..... ...+..++. +++ +.+..++..+ +..+-.+++....+..++..+......+.++.+|++|+.+|++
T Consensus 1138 wl~~~---l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~ 1214 (1622)
T PLN03130 1138 WLAIR---LETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYID 1214 (1622)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 10000 011111111 111 2222222111 2333334444555666777777777888899999999999997
Q ss_pred ccCCCccchh-ccccc--CCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCC
Q 000674 575 DHELNNDDVR-RISLQ--KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS 651 (1358)
Q Consensus 575 ~~e~~~~~~~-~~~~~--~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~ 651 (1358)
.++..+...+ ..+++ +.++.|+++|++|+|+++ .+++|+|+||+|++||.+||||++|||||||+++|+|+++|++
T Consensus 1215 ~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~ 1293 (1622)
T PLN03130 1215 LPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER 1293 (1622)
T ss_pred CCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCC
Confidence 5433221111 11111 234689999999999754 2479999999999999999999999999999999999999999
Q ss_pred cEEEEcC-------------eEEEEeCCCCCCCCCHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCC
Q 000674 652 GTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718 (1358)
Q Consensus 652 G~i~~~g-------------~i~yv~Q~~~~~~~tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~ 718 (1358)
|+|.++| +|+||||+|.+|++||||||..+.++++++..++++.|++++.++.+|+|.+|+|||+|.
T Consensus 1294 G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~ 1373 (1622)
T PLN03130 1294 GRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGE 1373 (1622)
T ss_pred ceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCC
Confidence 9999998 499999999999999999999988888999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEE
Q 000674 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQ 798 (1358)
Q Consensus 719 ~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~ 798 (1358)
+||||||||++||||++++|+|+|||||||+||+++.+.|.+. ++...+++|+|+|+|+++.+..||+|+||++|+|+|
T Consensus 1374 nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~-I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE 1452 (1622)
T PLN03130 1374 NFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKT-IREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVE 1452 (1622)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999987654 455567899999999999999999999999999999
Q ss_pred ecChHHHHhc-CchHHHHHHhh
Q 000674 799 SGNYQELLLA-GTAFEQLVNAH 819 (1358)
Q Consensus 799 ~g~~~~l~~~-~~~~~~~~~~~ 819 (1358)
.|+|+|++++ ++.|.++.+..
T Consensus 1453 ~Gt~~eLl~~~~g~f~~L~~~~ 1474 (1622)
T PLN03130 1453 FDTPENLLSNEGSAFSKMVQST 1474 (1622)
T ss_pred eCCHHHHHhCCCCHHHHHHHHc
Confidence 9999999987 57888887653
No 37
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.7e-57 Score=567.32 Aligned_cols=441 Identities=23% Similarity=0.334 Sum_probs=384.5
Q ss_pred HHHHHHHHHHHHHHHhhhcC----CCCchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 000674 910 SGFVGLQAAATYWLAYAIQI----PKITSGIL-IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPML 984 (1358)
Q Consensus 910 ~~~~~~~~~~~~wl~~~~~~----~~~~~~~~-l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~ 984 (1358)
+..+.+.++.++.....+|. ...+...+ ...++++++...++.++|.++..+.+.+....+-.++++|++++|++
T Consensus 164 l~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~ 243 (709)
T COG2274 164 LLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLS 243 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHH
Confidence 33444555566665554443 11222222 23445556777888999999999999999999999999999999999
Q ss_pred cccccChhhHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 985 FFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIR 1064 (1358)
Q Consensus 985 fFd~~p~G~IlnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~i~v~~~~~~~l~~~~l~~~~~~~~~~~~y~~~sr~l~r 1064 (1358)
||+++++|++++|++ |++.|...+...+...+..++..++.+++|++.+|+++++++..++++..+.....+..|+..+
T Consensus 244 ~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~ 322 (709)
T COG2274 244 YFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTR 322 (709)
T ss_pred HccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999996 7788888888777777777777888889999999999999888888887777777777777777
Q ss_pred HHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh
Q 000674 1065 INGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF-LVLI 1143 (1358)
Q Consensus 1065 l~~~~~spl~s~~~Etl~G~~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~-~~l~ 1143 (1358)
...+..+...++..|++.|+.|||+.+.|+++..++++..+++.+..+.......+......++..+..+++.++ +.++
T Consensus 323 ~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lV 402 (709)
T COG2274 323 KLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILV 402 (709)
T ss_pred HHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888999999999999999999999999999999999999999999999999888888887765555544 5567
Q ss_pred cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEE
Q 000674 1144 PRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKI 1223 (1358)
Q Consensus 1144 ~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf 1223 (1358)
..|.+|.|.+.++.+.+..+++|+..+++.+.+++....+.||+.++++.|+|.+. ++.+...|+.+|+|+|+||+|
T Consensus 403 l~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~---~~~~~~~~~~~g~I~~~nvsf 479 (709)
T COG2274 403 LEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEG---DKTLIHLPKLQGEIEFENVSF 479 (709)
T ss_pred hcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---ccccccccccCceEEEEEEEE
Confidence 89999999999999999999999999999999999999999999999999998642 222445567899999999999
Q ss_pred EeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCceeccccccc
Q 000674 1224 RYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLF 1303 (1358)
Q Consensus 1224 ~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~IsiVpQdp~LF 1303 (1358)
+|+++.|++|+|+|++|+|||+|||||+||||||||+++|.|+|+|++|+|++||+|++++++++||++|++||||++||
T Consensus 480 ~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf 559 (709)
T COG2274 480 RYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLF 559 (709)
T ss_pred EeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhh
Confidence 99998889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCccccccccCCcCCCC
Q 000674 1304 RGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSEQITYDYGWS 1355 (1358)
Q Consensus 1304 ~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~Gldt~v~e~g~~n~s 1355 (1358)
+|||||||.-.+ +.+||||++||+.|++||||+++|.||||+|+|+|. |-|
T Consensus 560 ~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~-~LS 611 (709)
T COG2274 560 SGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGA-NLS 611 (709)
T ss_pred cCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCC-CCC
Confidence 999999996333 468999999999999999999999999999999999 766
No 38
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.4e-55 Score=601.15 Aligned_cols=471 Identities=19% Similarity=0.240 Sum_probs=342.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000674 344 RSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALP 422 (1358)
Q Consensus 344 ~~~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l~ 422 (1358)
+.+.+.-..+...+|++.++.+..-.++.++|+++|.++.|++.+.+.+. .+..+....++++.+++++.....+..++
T Consensus 976 ~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~ 1055 (1495)
T PLN03232 976 SSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWA 1055 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445556667777665555677899999999999999987544 33344444455555554444332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 423 GLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY 502 (1358)
Q Consensus 423 gl~v~~~~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~ 502 (1358)
.+++++++..+.....+..+..++..+..+..-.+..+|.++|+++||.|++|+.|.++.++..+...+...........
T Consensus 1056 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 1135 (1495)
T PLN03232 1056 IMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRW 1135 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222221112222223333445555566667778899999999999999999998887666555444322111111110
Q ss_pred HHHHHHHHHHHHHHH-HHH-HHHHhCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000674 503 GTVIYWMSPTIISSV-IFL-GCALTGSAPLN-----ASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLD 575 (1358)
Q Consensus 503 ~~~~~~~~p~~v~~~-~f~-~~~l~~~~~Lt-----~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~ 575 (1358)
..+.. ..+..++ .++ .+.+...+.+. ++.+-.+++....+..|+..+...+..+..+.+|++||.++++.
T Consensus 1136 l~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~ 1212 (1495)
T PLN03232 1136 LTIRL---ETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDL 1212 (1495)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 00000 0111111 111 12222212221 22222344555567788999999999999999999999999975
Q ss_pred cCCCccchhc-cccc--CCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCc
Q 000674 576 HELNNDDVRR-ISLQ--KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISG 652 (1358)
Q Consensus 576 ~e~~~~~~~~-~~~~--~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G 652 (1358)
++..+...+. .+++ +..+.|+++|++|+|+++ .+++|+|+||+|++||.+||||++|||||||+++|+|+++|++|
T Consensus 1213 ~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G 1291 (1495)
T PLN03232 1213 PSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKG 1291 (1495)
T ss_pred CccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCc
Confidence 4322111111 1111 234679999999999754 35799999999999999999999999999999999999999999
Q ss_pred EEEEcC-------------eEEEEeCCCCCCCCCHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCC
Q 000674 653 TVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1358)
Q Consensus 653 ~i~~~g-------------~i~yv~Q~~~~~~~tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~ 719 (1358)
+|.++| +++||||+|.+|++||||||.++.++++++..++++.+++++.++.+|+|.+|++|++|.+
T Consensus 1292 ~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~ 1371 (1495)
T PLN03232 1292 RIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGEN 1371 (1495)
T ss_pred eEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCC
Confidence 999998 4999999999999999999999888889999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEe
Q 000674 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1358)
Q Consensus 720 LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1358)
||||||||++||||++++|+|+|||||||+||+++.+.|.+. ++...+++|+|+|+|+++.+..||+|++|++|+|+|.
T Consensus 1372 LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~-L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~ 1450 (1495)
T PLN03232 1372 FSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRT-IREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEY 1450 (1495)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHH-HHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999987654 4555678999999999999999999999999999999
Q ss_pred cChHHHHhcCc-hHHHHHHhh
Q 000674 800 GNYQELLLAGT-AFEQLVNAH 819 (1358)
Q Consensus 800 g~~~~l~~~~~-~~~~~~~~~ 819 (1358)
|+|+|++++++ .|.++.++.
T Consensus 1451 Gt~~eLl~~~~~~f~~l~~~~ 1471 (1495)
T PLN03232 1451 DSPQELLSRDTSAFFRMVHST 1471 (1495)
T ss_pred CCHHHHHhCCCCHHHHHHHHh
Confidence 99999998764 788887543
No 39
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-55 Score=504.75 Aligned_cols=473 Identities=23% Similarity=0.349 Sum_probs=355.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--HHHHh
Q 000674 340 FGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVL--FGVVG 417 (1358)
Q Consensus 340 ~~~~~~~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~~~~~w~~plqi~~~~~~L--~~~lG 417 (1358)
..+.....|+-+.+.-.+|+|....+.........|++.|.+..|++.++++.......|...+-++.+..+. |.-++
T Consensus 80 lvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~ 159 (573)
T COG4987 80 LVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIP 159 (573)
T ss_pred HhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 3455667788888889999999999988777889999999999999999998777766665554433333322 44455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 418 LGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQ 497 (1358)
Q Consensus 418 ~~~l~gl~v~~~~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~ 497 (1358)
.+.+.|+...++.+.+...+.+..++..++..+.+..=-+-..+.+.|....+++|-++.+.+.++..-+.=.+.-+|.+
T Consensus 160 ~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~ 239 (573)
T COG4987 160 LALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQA 239 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666665555555555556666666666666666666667889999999999999999988776543332222222222
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000674 498 LRKAYGTVIY-WMSPTIISSVIFLGCALTGSAPLNA-STIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLD 575 (1358)
Q Consensus 498 ~~~~~~~~~~-~~~p~~v~~~~f~~~~l~~~~~Lt~-~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~ 575 (1358)
.......++. ...-.+++...+......+.+..+. ..+...+..|..+..-...-|.++....|+..|.+|+.+.+.+
T Consensus 240 ~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q 319 (573)
T COG4987 240 RFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQ 319 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccC
Confidence 1112222221 1122222322222222223234442 2222222222222211112236777888999999999998876
Q ss_pred cCCCccchhcccccCCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEE
Q 000674 576 HELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655 (1358)
Q Consensus 576 ~e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~ 655 (1358)
++....+ +... +..+..++++|++|+|+++ +.++|+|+||++++||.+||+|++|||||||++.|.|-++|++|+|.
T Consensus 320 ~~e~~~~-~~~~-~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~ 396 (573)
T COG4987 320 KPEVTFP-DEQT-ATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSIT 396 (573)
T ss_pred CcccCCC-cccc-CCccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeee
Confidence 5433211 1111 1122279999999999976 45899999999999999999999999999999999999999999999
Q ss_pred EcC-------------eEEEEeCCCCCCCCCHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCC
Q 000674 656 LYG-------------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1358)
Q Consensus 656 ~~g-------------~i~yv~Q~~~~~~~tv~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 721 (1358)
.+| .++.++|.+.+|++|+|||+.++++ -.+|...++++..+|++-++..|+|.+|.+||.|..||
T Consensus 397 ~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LS 476 (573)
T COG4987 397 LNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLS 476 (573)
T ss_pred ECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCC
Confidence 988 4899999999999999999999876 46778899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecC
Q 000674 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1358)
Q Consensus 722 GGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 801 (1358)
||||||++|||++.+|++++||||||.|||+.|++++.+.+. ...+|||+|+|||++..++.+|+|++|++|+++++|+
T Consensus 477 GGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~-~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~ 555 (573)
T COG4987 477 GGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLF-EHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGT 555 (573)
T ss_pred chHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHH-HHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCC
Confidence 999999999999999999999999999999999999987654 4457999999999999999999999999999999999
Q ss_pred hHHHHhcCchHHHHH
Q 000674 802 YQELLLAGTAFEQLV 816 (1358)
Q Consensus 802 ~~~l~~~~~~~~~~~ 816 (1358)
|++++.+++.|.++.
T Consensus 556 ~~~Ll~~~g~~~~l~ 570 (573)
T COG4987 556 HAELLANNGRYKRLY 570 (573)
T ss_pred HHhhhccccHHHHHh
Confidence 999999888887764
No 40
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=4.3e-56 Score=556.36 Aligned_cols=409 Identities=20% Similarity=0.223 Sum_probs=344.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccChhhHHHHHhcCHHHHHhhcHHHHHHHHHHHHHH
Q 000674 944 VSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTEL 1023 (1358)
Q Consensus 944 l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~D~~~id~~l~~~l~~~~~~~~~~ 1023 (1358)
+.++..++.++..++....+.+...++|.++++++++.|.+||++.++|++++|+++|++.++..+...+..++..++.+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~ 141 (529)
T TIGR02868 62 FGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVG 141 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888888899999999999999999999999999999999999999999999999998888888888888
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHH
Q 000674 1024 LAIIGIMTFVTWQVLVVAIFAMVAVRFV-QRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLK 1102 (1358)
Q Consensus 1024 l~~i~v~~~~~~~l~~~~l~~~~~~~~~-~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~G~~tIRAf~~e~~f~~~~~~ 1102 (1358)
++.++++++.+|.++++++..++++.++ ..++.+..++..+...+..+...+++.|+++|+++||+|+.|+++.+++.+
T Consensus 142 ~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~ 221 (529)
T TIGR02868 142 SAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEA 221 (529)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHH
Confidence 8888999999999988777665554443 344445556666666677788999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000674 1103 LVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAA-LFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYI 1181 (1358)
Q Consensus 1103 ~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~-~~~~l~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~ 1181 (1358)
..++..+..........+......++..+..+.+. +.+..+..|.++.|.+..++.|+..+..++..+.+.+..++...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 301 (529)
T TIGR02868 222 ADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVR 301 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777666655555544444444433322222 22344568899999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHH
Q 000674 1182 ISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLIS 1261 (1358)
Q Consensus 1182 ~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~ 1261 (1358)
.+.+|+.++++.++|.+.. +...+...+|..++|+|+||+|+|+++. ++|+|+||+|+|||+|||||+||||||||++
T Consensus 302 ~~~~ri~~~l~~~~~~~~~-~~~~~~~~~~~~~~I~~~~vsf~Y~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~ 379 (529)
T TIGR02868 302 AAAERIEEVTGAKGPRPEG-VVPAAGALGLGKPTLELRDLSFGYPGSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLM 379 (529)
T ss_pred HHHHHHHHHhcCCCCcCCC-CCCCCcccCCCCceEEEEEEEEecCCCC-ceeecceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 9999999999877653321 1111112344567899999999997544 5999999999999999999999999999999
Q ss_pred HHhcccCCCCCEEEEcCEeCCCCChHHHhhcCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCC
Q 000674 1262 ALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPN 1340 (1358)
Q Consensus 1262 lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~IsiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~ 1340 (1358)
+|+|+|+|++|+|.+||+||+++ .+++|++|++|||||+||+|||||||..++ +++|||+++||+.|+++|+|++||+
T Consensus 380 lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~ 458 (529)
T TIGR02868 380 LLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPD 458 (529)
T ss_pred HHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcc
Confidence 99999999999999999999999 999999999999999999999999998653 5799999999999999999999999
Q ss_pred ccccccccCCcCCCCC
Q 000674 1341 KLDSSEQITYDYGWSS 1356 (1358)
Q Consensus 1341 Gldt~v~e~g~~n~s~ 1356 (1358)
||||++||+|. |.|-
T Consensus 459 GldT~ige~G~-~LSG 473 (529)
T TIGR02868 459 GLDTVLGEGGA-RLSG 473 (529)
T ss_pred cccchhccccC-cCCH
Confidence 99999999998 8773
No 41
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1e-54 Score=591.50 Aligned_cols=466 Identities=15% Similarity=0.173 Sum_probs=348.7
Q ss_pred HHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000674 352 ALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLIC 430 (1358)
Q Consensus 352 ~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~~~ 430 (1358)
.+-..+|++.++.+..-.++..+|+|+|.++.|++.+.+.+. .+..+....+.++.++++++....+..++.++++++.
T Consensus 1032 ~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i~~~~~~ 1111 (1560)
T PTZ00243 1032 NMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALVPCGYLY 1111 (1560)
T ss_pred HHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777666555677899999999999999988544 3445555556666555555433322222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 000674 431 GLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTV-IYWM 509 (1358)
Q Consensus 431 ~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~-~~~~ 509 (1358)
..+...+.+..+..++.....++.-.+..+|.++|+++||.|++|+.|.++..+.-+...+...+.......... .-..
T Consensus 1112 ~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l 1191 (1560)
T PTZ00243 1112 YRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFL 1191 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333444455556666667777789999999999999999999988777654433333211111111111111 1111
Q ss_pred HHHHHHH-HHHHHHH-HhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc-cc----
Q 000674 510 SPTIISS-VIFLGCA-LTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNN-DD---- 582 (1358)
Q Consensus 510 ~p~~v~~-~~f~~~~-l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~-~~---- 582 (1358)
...++.+ +.++.+. +.....++++.+..++.+...+..|+..+...+..+.++.+|++||.+|++..+.++ ..
T Consensus 1192 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~ 1271 (1560)
T PTZ00243 1192 SNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEE 1271 (1560)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccc
Confidence 1111111 1122221 223345788877777777788889999999999999999999999999995321110 00
Q ss_pred -------------------hhcc-c-----ccCCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHH
Q 000674 583 -------------------VRRI-S-----LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKS 637 (1358)
Q Consensus 583 -------------------~~~~-~-----~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKS 637 (1358)
.+.. + .....+.|+|+|++|+|+++ ..++|+|+||+|++||.+||||++|||||
T Consensus 1272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vsf~I~~GekVaIVGrTGSGKS 1350 (1560)
T PTZ00243 1272 VDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGVSFRIAPREKVGIVGRTGSGKS 1350 (1560)
T ss_pred ccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecceEEECCCCEEEEECCCCCCHH
Confidence 0000 0 01123579999999999764 34699999999999999999999999999
Q ss_pred HHHHHHhCCccCCCcEEEEcC-------------eEEEEeCCCCCCCCCHHHHHhcCCCCCHHHHHHHHHHhccHHHHhc
Q 000674 638 SLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINN 704 (1358)
Q Consensus 638 tLl~~ilG~~~~~~G~i~~~g-------------~i~yv~Q~~~~~~~tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~ 704 (1358)
||+++|+|+++|++|+|.++| +|+||||+|.+|++||||||..+.++++++..++++.|++++.++.
T Consensus 1351 TLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~ 1430 (1560)
T PTZ00243 1351 TLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVAS 1430 (1560)
T ss_pred HHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhh
Confidence 999999999999999999998 4999999999999999999988777888999999999999999999
Q ss_pred CCCCCCccccCCCCCCChHHHHHHHHHHHHhcC-CCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhh
Q 000674 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND-ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS 783 (1358)
Q Consensus 705 l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~-~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~ 783 (1358)
+|+|.+|.+|++|.+||||||||++||||++++ |+|+|||||||+||+++.+.|.+. +....+++|+|+|+|+++.+.
T Consensus 1431 lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~-L~~~~~~~TvI~IAHRl~ti~ 1509 (1560)
T PTZ00243 1431 ESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQAT-VMSAFSAYTVITIAHRLHTVA 1509 (1560)
T ss_pred CcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHH-HHHHCCCCEEEEEeccHHHHH
Confidence 999999999999999999999999999999996 899999999999999999998654 455567899999999999999
Q ss_pred ccCeEEEEeCCeEEEecChHHHHhc-CchHHHHHHhh
Q 000674 784 EVDRILVLEGGQITQSGNYQELLLA-GTAFEQLVNAH 819 (1358)
Q Consensus 784 ~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 819 (1358)
.||+|++|++|+|++.|+|+|++++ ++.|.++.+..
T Consensus 1510 ~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~ 1546 (1560)
T PTZ00243 1510 QYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEAL 1546 (1560)
T ss_pred hCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 9999999999999999999999974 67888887543
No 42
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=4.7e-55 Score=550.85 Aligned_cols=440 Identities=23% Similarity=0.314 Sum_probs=362.3
Q ss_pred HHHHHHHHHHHHHHHhhhcCCC--Cc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccc
Q 000674 910 SGFVGLQAAATYWLAYAIQIPK--IT-SGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFF 986 (1358)
Q Consensus 910 ~~~~~~~~~~~~wl~~~~~~~~--~~-~~~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fF 986 (1358)
++...+....++++...++... .. ...+...++++.++..++.++..+...+.+.+...++|.++++++++.|++||
T Consensus 24 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~ 103 (567)
T COG1132 24 LLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFF 103 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHh
Confidence 3334455555555554433211 11 11223334444556667777777788888899999999999999999999999
Q ss_pred cccChhhHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 987 DSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRIN 1066 (1358)
Q Consensus 987 d~~p~G~IlnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~i~v~~~~~~~l~~~~l~~~~~~~~~~~~y~~~sr~l~rl~ 1066 (1358)
+++++|++++|+++|++.++..+......+...++.+++.+++++..+|.+.++.+...+++.+...++.+..++..+..
T Consensus 104 ~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (567)
T COG1132 104 DKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRV 183 (567)
T ss_pred CcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888666666788888889999999999988888777777777777777778888888
Q ss_pred hhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcC
Q 000674 1067 GTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAAL-FLVLIPR 1145 (1358)
Q Consensus 1067 ~~~~spl~s~~~Etl~G~~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~-~~~l~~~ 1145 (1358)
....+.+.+.+.|+++|+++||+|+.++...+++.+..+...+...........+.....++..+....+.. ....+..
T Consensus 184 ~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (567)
T COG1132 184 REALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLS 263 (567)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 889999999999999999999999999998888888877766665444444444443334444333322222 2334567
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEe
Q 000674 1146 GYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRY 1225 (1358)
Q Consensus 1146 g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y 1225 (1358)
+.++.|.+..++.|...+..++..+...+..++....|.||+.++++.+++... ...+ .++..|+|+|+||+|+|
T Consensus 264 ~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~--~~~~~~~I~f~~vsf~y 338 (567)
T COG1132 264 GSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED---PPDP--LKDTIGSIEFENVSFSY 338 (567)
T ss_pred CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CCCC--CCCCCCeEEEEEEEEEc
Confidence 789999999999999999999999999999999999999999999987665321 1111 34567899999999999
Q ss_pred CCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCceeccccccccc
Q 000674 1226 RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRG 1305 (1358)
Q Consensus 1226 ~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~IsiVpQdp~LF~G 1305 (1358)
+++ ++||+|+||+|+|||+||||||||||||||+++|+|+|||++|+|+|||+||+++++++||++|++|||||+||+|
T Consensus 339 ~~~-~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~ 417 (567)
T COG1132 339 PGK-KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSG 417 (567)
T ss_pred CCC-CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecc
Confidence 764 4699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcCCCCC-CCHHHHHHHHHHcCCchHHhcCCCccccccccCCcCCCCC
Q 000674 1306 SVRTNLDPLGL-YSDDEIWKALEKCQLKTTISSLPNKLDSSEQITYDYGWSS 1356 (1358)
Q Consensus 1306 TIR~NLdp~~~-~sDeeI~~AL~~a~l~~~I~~Lp~Gldt~v~e~g~~n~s~ 1356 (1358)
|||+||+++.+ +||||+++|+++|+++|||+++|+||||.|||+|. |.|-
T Consensus 418 TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~-~LSg 468 (567)
T COG1132 418 TIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGV-NLSG 468 (567)
T ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCc-cCCH
Confidence 99999998765 79999999999999999999999999999999999 8884
No 43
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=3.3e-54 Score=491.59 Aligned_cols=527 Identities=22% Similarity=0.297 Sum_probs=411.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 267 VRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSG 346 (1358)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 346 (1358)
...+....++..++..+++..+-.++....|+.+...-+-+=. ..+...-..+.+.....++++.++..--.+...|+|
T Consensus 13 ~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~-S~s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig 91 (580)
T COG4618 13 LLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLP-SRSVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIG 91 (580)
T ss_pred hhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcc-CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677778888888888888889999877655443211 122223333444444455556665554556678999
Q ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH------HHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000674 347 MRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF------WFHLTWSLALQLFLAIGVLFGVVGLGA 420 (1358)
Q Consensus 347 ~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~------~~~~~w~~plqi~~~~~~L~~~lG~~~ 420 (1358)
.++-..|..-||.-+++.....+......+.. .|.+.+..|.. +|...| .|+=++++ +++.-.+|+.+
T Consensus 92 ~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW-~P~yl~v~-fl~Hp~lG~~a 165 (580)
T COG4618 92 ERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPW-MPLYLAVI-FLFHPWLGLIA 165 (580)
T ss_pred HHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCch-HHHHHHHH-HHHHHHHHHHH
Confidence 99999999999998864433222222223333 36666655443 344455 46644443 45567899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 421 LPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRK 500 (1358)
Q Consensus 421 l~gl~v~~~~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~ 500 (1358)
++|.++++.+..+|- +..++--++..+..-+|....+-.+.|..+|+.+|..+...++..+....-++...+..-..
T Consensus 166 ~~ga~iLv~la~ln~---~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~ 242 (580)
T COG4618 166 LAGAIILVVLALLNE---RATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRN 242 (580)
T ss_pred HHHHHHHHHHHHHHH---HHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999888888777763 44555566777888899999999999999999999999999999998888887766655433
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 000674 501 AY-GTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELN 579 (1358)
Q Consensus 501 ~~-~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~ 579 (1358)
.. +...-..--.+-+.+.=.+.+++-++.+|++.++..--+..-.-.|+......+.++..|+.|.+|++++|......
T Consensus 243 ~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~ 322 (580)
T COG4618 243 GAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAA 322 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 22 22111111112222222233333347899999998877777777899999999999999999999999999754322
Q ss_pred ccchhcccccCCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-
Q 000674 580 NDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG- 658 (1358)
Q Consensus 580 ~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g- 658 (1358)
.++.+.+.+++.+.++++++.=+ +..+|+++|+||++++||-++|+||+|||||||.++|.|..+|.+|.|+++|
T Consensus 323 ---~~~m~LP~P~g~L~Ve~l~~~PP-g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga 398 (580)
T COG4618 323 ---AERMPLPAPQGALSVERLTAAPP-GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGA 398 (580)
T ss_pred ---cCCCCCCCCCceeeEeeeeecCC-CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecch
Confidence 23345567788999999999644 4568999999999999999999999999999999999999999999999998
Q ss_pred ------------eEEEEeCCCCCCCCCHHHHHh-cCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHH
Q 000674 659 ------------SIAYVSQTSWIQSGSIRDNIL-YGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1358)
Q Consensus 659 ------------~i~yv~Q~~~~~~~tv~eni~-~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 725 (1358)
+|||.||+--+|.+||.|||. |+.+.|.++.-++.+..+.++-+-.+|+|++|.||+.|.+||||||
T Consensus 399 ~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQR 478 (580)
T COG4618 399 DLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQR 478 (580)
T ss_pred hhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHH
Confidence 599999999999999999996 7778888888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHH
Q 000674 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQEL 805 (1358)
Q Consensus 726 qRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l 805 (1358)
|||+||||+|.||.+++||||-|+||..-++.+.+.+.....+|.|+|+|||+++.+..+|+|.+|+||++...|+.+|+
T Consensus 479 QRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eV 558 (580)
T COG4618 479 QRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEV 558 (580)
T ss_pred HHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHH
Confidence 99999999999999999999999999999999988777777889999999999999999999999999999999999998
Q ss_pred Hh
Q 000674 806 LL 807 (1358)
Q Consensus 806 ~~ 807 (1358)
++
T Consensus 559 La 560 (580)
T COG4618 559 LA 560 (580)
T ss_pred HH
Confidence 75
No 44
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=7.8e-54 Score=536.65 Aligned_cols=510 Identities=17% Similarity=0.148 Sum_probs=363.4
Q ss_pred HHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 271 ITN-VYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1358)
Q Consensus 271 l~~-~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ri 349 (1358)
+++ .+++.+++..++.++..++..+.|.++..+++...... . ....+.+++++ +..++.....+...+.+.++
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~-~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 84 (555)
T TIGR01194 11 LLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLG-Q--GSLFSFGGLCL---LALLFRIGADIFPAYAGMHI 84 (555)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-c--hHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 455 67778888888888888999999998887765311010 0 11111112222 12222222334456778888
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000674 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1358)
Q Consensus 350 r~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~~ 429 (1358)
...+...+|+|.++++.....+.++|+++|.++.|++.+.++...+..+....+.++++++++++.-...+++.++++.+
T Consensus 85 ~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~ 164 (555)
T TIGR01194 85 IANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAIII 164 (555)
T ss_pred HHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 88888899999999887655667899999999999999988765444444444444444444433221112222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHH--HHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 000674 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEE--KFKSLI----ESRREKEFKWLSEAQLRKAYG 503 (1358)
Q Consensus 430 ~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~--~f~~~i----~~~R~~El~~l~~~~~~~~~~ 503 (1358)
.+.+..+..++.++...+..+..++..+.+.|.++|++++|.|+.|+ ...++. ++.|+...+..+.. ....
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 241 (555)
T TIGR01194 165 GTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIF---IAAE 241 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHHH
Confidence 22223334555666667777788888999999999999999999854 223333 33333222211111 0011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccc-
Q 000674 504 TVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDD- 582 (1358)
Q Consensus 504 ~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~- 582 (1358)
.+........+.++.+.+. .. +.+|.+.+++.+.+...+..|+..+...+..+.++++|.+||.++++.++.++..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~--~~-~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~ 318 (555)
T TIGR01194 242 NFGQLLFFLLIGCALFAAA--MF-ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPEL 318 (555)
T ss_pred HHHHHHHHHHHHHHHHHHH--Hh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 1111111111111111111 11 4789999888888889999999999999999999999999999998532111000
Q ss_pred --hhcc-----cccCCCCcEEEEeeEEEeCCCC--CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcE
Q 000674 583 --VRRI-----SLQKSDRSVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653 (1358)
Q Consensus 583 --~~~~-----~~~~~~~~i~~~~~~f~~~~~~--~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~ 653 (1358)
.+.. +.......|+++|++|+|++++ .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~ 398 (555)
T TIGR01194 319 ELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGE 398 (555)
T ss_pred cccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 0000 1112235799999999997532 236999999999999999999999999999999999999999999
Q ss_pred EEEcC-------------eEEEEeCCCCCCCCCHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCC
Q 000674 654 VNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1358)
Q Consensus 654 i~~~g-------------~i~yv~Q~~~~~~~tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~L 720 (1358)
|.++| .++||+|+|+++++|+++|+ ....++++..++++.++++++++.+|+|++|. .+|
T Consensus 399 i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~L 471 (555)
T TIGR01194 399 ILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TAL 471 (555)
T ss_pred EEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCCc-----ccC
Confidence 99987 38999999999999999995 23356777889999999999999999999884 789
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhH-hcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEe
Q 000674 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA-ALEKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1358)
Q Consensus 721 SGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~-~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1358)
|||||||++||||++++|+++|||||||+||+++++.+.+.+... ..+++|+|++||+++.+..||+|++|++|++++.
T Consensus 472 SgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 472 STGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999998776543 3468999999999999989999999999999864
No 45
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=6.5e-55 Score=560.38 Aligned_cols=463 Identities=21% Similarity=0.230 Sum_probs=372.1
Q ss_pred HHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 887 KPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIP--KIT---SGILIGVYAGVSTASAVFVYFRSFFAAH 961 (1358)
Q Consensus 887 ~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~--~~~---~~~~l~iy~~l~~~~~i~~~~~~~~~~~ 961 (1358)
+.+++|++..+. .+...+++.++...+.+..+++....++.- ... ....+.+++++.++..++.+++.+....
T Consensus 150 ~~l~~~~~~~~~--~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 227 (711)
T TIGR00958 150 FRLLGLSGRDWP--WLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNY 227 (711)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555553322 222333334444555566666665544321 111 1122344555556677778888888899
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcccccccChhhHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000674 962 LGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVA 1041 (1358)
Q Consensus 962 ~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~i~v~~~~~~~l~~~~ 1041 (1358)
.+.+...++|+++++++++.|++||+++++|+++||+++|++.++..+...+..++..++.+++.+++++..+|.+.+++
T Consensus 228 ~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~ 307 (711)
T TIGR00958 228 TMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVT 307 (711)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000674 1042 IFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWL 1121 (1358)
Q Consensus 1042 l~~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~G~~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl 1121 (1358)
+..++++.++.+++.+..++..+...+..+...+++.|+++|+++||+|+.|+++.+++.+..++..+............
T Consensus 308 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (711)
T TIGR00958 308 LINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGY 387 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777778877777777777888888999999999999999999999999999999887776654443332222
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCC
Q 000674 1122 ILRVEALQNLTL-FTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAI 1200 (1358)
Q Consensus 1122 ~~~l~~l~~~~~-~~~~~~~~l~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~ 1200 (1358)
.....++..+.. ++..+.+.++..|.++.|.+..++.|...+..++..+...+.++++...+.+|+.++++.+++.+..
T Consensus 388 ~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~ 467 (711)
T TIGR00958 388 LWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT 467 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 222222222211 1122223445689999999999999999999999999999999999999999999999877654321
Q ss_pred cCCCCCCCCCCCcceEEEEEEEEEeCCC-CCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCE
Q 000674 1201 VEDKRPPSSWPFKGRIELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGV 1279 (1358)
Q Consensus 1201 ~~~~~~~~~wp~~G~I~f~nVsf~Y~~~-~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGv 1279 (1358)
. ....++..|.|+|+||+|+|+++ .++||+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|++||+
T Consensus 468 --~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~ 543 (711)
T TIGR00958 468 --G--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGV 543 (711)
T ss_pred --C--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCE
Confidence 1 11223567899999999999643 346999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHHhhcCceecccccccccchhhhcCCC-CCCCHHHHHHHHHHcCCchHHhcCCCccccccccCCcCCCCC
Q 000674 1280 DICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKALEKCQLKTTISSLPNKLDSSEQITYDYGWSS 1356 (1358)
Q Consensus 1280 DI~~i~l~~LRs~IsiVpQdp~LF~GTIR~NLdp~-~~~sDeeI~~AL~~a~l~~~I~~Lp~Gldt~v~e~g~~n~s~ 1356 (1358)
|+++++.+++|++|++|||||++|+|||||||... .+++|||+++|+++++++++|+++|+||||.++|+|. |-|-
T Consensus 544 ~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~-~LSG 620 (711)
T TIGR00958 544 PLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGS-QLSG 620 (711)
T ss_pred EHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCC-cCCH
Confidence 99999999999999999999999999999999744 3578999999999999999999999999999999998 7763
No 46
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=9.4e-53 Score=572.45 Aligned_cols=471 Identities=19% Similarity=0.189 Sum_probs=348.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000674 344 RSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALP 422 (1358)
Q Consensus 344 ~~~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l~ 422 (1358)
+.+.+.-..+...++++.++.+..-.++..+|+|+|.++.|++.+.+... .+..+....+.+++++++++...++.+++
T Consensus 951 ~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~ 1030 (1490)
T TIGR01271 951 HTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIA 1030 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555556666666655444567899999999999999987544 34455555556666655555444443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000674 423 GLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKA- 501 (1358)
Q Consensus 423 gl~v~~~~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~- 501 (1358)
.++++++...+...+.+..+..++.....+....+..+|.++|+.+||.|++|+.|.++..+.-+...+..........
T Consensus 1031 ~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 1110 (1490)
T TIGR01271 1031 AIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRW 1110 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333333333333444445555666667778888999999999999999999999888776654432211111100000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcc
Q 000674 502 YGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNND 581 (1358)
Q Consensus 502 ~~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~ 581 (1358)
+...+-...-.++..+.+.. ++....+++.+-.++++...+..++..+...+..+..+.+|.+||.+|++.++..+.
T Consensus 1111 l~~~~~~i~~~~~~~~~~l~---~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~ 1187 (1490)
T TIGR01271 1111 FQMRIDIIFVFFFIAVTFIA---IGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPR 1187 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 10000000101111111111 111223455555556666667778888888888999999999999999965432211
Q ss_pred chh--------------c-ccc--cCCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHh
Q 000674 582 DVR--------------R-ISL--QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL 644 (1358)
Q Consensus 582 ~~~--------------~-~~~--~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~il 644 (1358)
..+ . .++ .+..+.|+++|++|+|+++ ..++|+|+||+|++||.+||||++|||||||+++|+
T Consensus 1188 ~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~ 1266 (1490)
T TIGR01271 1188 PSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALL 1266 (1490)
T ss_pred ccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 000 0 000 1234679999999999864 357999999999999999999999999999999999
Q ss_pred CCccCCCcEEEEcC-------------eEEEEeCCCCCCCCCHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCc
Q 000674 645 GEIPKISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLT 711 (1358)
Q Consensus 645 G~~~~~~G~i~~~g-------------~i~yv~Q~~~~~~~tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t 711 (1358)
|+++ .+|+|.++| +++|+||+|.+|++||||||.....+++++..++++.|++.+.++.+|+|.+|
T Consensus 1267 rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt 1345 (1490)
T TIGR01271 1267 RLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDF 1345 (1490)
T ss_pred hhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCcccccc
Confidence 9997 799999988 49999999999999999999876678899999999999999999999999999
Q ss_pred cccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEE
Q 000674 712 EIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVL 791 (1358)
Q Consensus 712 ~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l 791 (1358)
.||++|.+||||||||++||||++++|+|+|||||||+||+++.+.|.+.+ +...+++|+|+|||+++.+..+|+|++|
T Consensus 1346 ~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L-~~~~~~~TvI~IaHRl~ti~~~DrIlvL 1424 (1490)
T TIGR01271 1346 VLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTL-KQSFSNCTVILSEHRVEALLECQQFLVI 1424 (1490)
T ss_pred ccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHH-HHHcCCCEEEEEecCHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999886654 4556789999999999999999999999
Q ss_pred eCCeEEEecChHHHHhcCchHHHHHHhhh
Q 000674 792 EGGQITQSGNYQELLLAGTAFEQLVNAHR 820 (1358)
Q Consensus 792 ~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 820 (1358)
++|+|++.|+|++++++++.|.++.++..
T Consensus 1425 ~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1425 EGSSVKQYDSIQKLLNETSLFKQAMSAAD 1453 (1490)
T ss_pred ECCEEEEeCCHHHHHcCCcHHHHHHHHhC
Confidence 99999999999999988888988876543
No 47
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=6.3e-54 Score=551.84 Aligned_cols=411 Identities=22% Similarity=0.290 Sum_probs=352.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccChhhHHHHHhcCHHHHHhhcHHHHHHHH
Q 000674 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVA 1017 (1358)
Q Consensus 938 l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~D~~~id~~l~~~l~~~~ 1017 (1358)
..+++++.++..++.+++.+.....+.+...+++.+++++++++|++||++.++|++++|++ |++.++..+...+...+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~ 257 (686)
T TIGR03797 179 ALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTL 257 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHH
Confidence 34455556667788888999999999999999999999999999999999999999999998 79999888877776666
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHH
Q 000674 1018 ASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFF 1097 (1358)
Q Consensus 1018 ~~~~~~l~~i~v~~~~~~~l~~~~l~~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~G~~tIRAf~~e~~f~ 1097 (1358)
..++.+++.++++++.+|++.++++.+++++..+..++.+..+...+......+...+++.|+++|+.+||+|+.|+++.
T Consensus 258 ~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~ 337 (686)
T TIGR03797 258 LSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAF 337 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHH
Confidence 66666777788888999999887776666666666666666666666666667788999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 1098 QNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTA-ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCY 1176 (1358)
Q Consensus 1098 ~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~-~~~~~l~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~ 1176 (1358)
+++.+..++..+..+.......|......++..+..+++ .+.+.++..|.++.|.+..+.++...+..|+..+...+.+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~ 417 (686)
T TIGR03797 338 ARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLIS 417 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888888777777777666665554433332 2234455689999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccH
Q 000674 1177 LANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGK 1256 (1358)
Q Consensus 1177 le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGK 1256 (1358)
++....+.+|+.++++.|+|.+. +...+ .+..|.|+|+||+|+|+++.+++|+|+||+|+|||+|||||+|||||
T Consensus 418 ~~~~~~~~~ri~~~l~~~~e~~~---~~~~~--~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGK 492 (686)
T TIGR03797 418 ILAVIPLWERAKPILEALPEVDE---AKTDP--GKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGK 492 (686)
T ss_pred HHHHHHHHHHHHHHhcCCccccc---CcCCC--CCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCH
Confidence 99999999999999987766431 11111 23467899999999997666779999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCceecccccccccchhhhcCCCCCCCHHHHHHHHHHcCCchHHh
Q 000674 1257 TTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTIS 1336 (1358)
Q Consensus 1257 STL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~IsiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~ 1336 (1358)
|||+++|.|+|+|++|+|++||+|+++++.+++|++|++|||||.||+|||||||..++.++|||+++|++.|+++++|+
T Consensus 493 STLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~ 572 (686)
T TIGR03797 493 STLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIR 572 (686)
T ss_pred HHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998766689999999999999999999
Q ss_pred cCCCccccccccCCcCCCC
Q 000674 1337 SLPNKLDSSEQITYDYGWS 1355 (1358)
Q Consensus 1337 ~Lp~Gldt~v~e~g~~n~s 1355 (1358)
++|+||||+++|+|. |-|
T Consensus 573 ~lp~G~dt~ige~G~-~LS 590 (686)
T TIGR03797 573 AMPMGMHTVISEGGG-TLS 590 (686)
T ss_pred hccccccccccCCCC-CCC
Confidence 999999999999998 766
No 48
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-55 Score=491.28 Aligned_cols=456 Identities=22% Similarity=0.345 Sum_probs=338.7
Q ss_pred HHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---H
Q 000674 356 AVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWF-HLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLIC---G 431 (1358)
Q Consensus 356 ~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~~-~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~~~---~ 431 (1358)
.+|++...||-.-.-...+||+...|..-...+. +..++ ..+--..+.++++++ |..+-.-...|++|++.+ .
T Consensus 297 ~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~v--YF~~~Fn~wFgLIVfl~m~lY~ 373 (790)
T KOG0056|consen 297 ELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMV--YFFIKFNIWFGLIVFLMMLLYC 373 (790)
T ss_pred HHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhh--hhhhhHhHHHHHHHHHHHHHHh
Confidence 4455555554332223457888777764444433 22221 222222344455544 333333344555544332 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 432 LLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEK----FKSLIESRREKEFKWLSEAQLRKAYGTVIY 507 (1358)
Q Consensus 432 ~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~----f~~~i~~~R~~El~~l~~~~~~~~~~~~~~ 507 (1358)
.+...+...-.++|++....-.+--....+.|-+..+||.|+.|+. +.+.|.+..+.|-|.+....+++.....++
T Consensus 374 ~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii 453 (790)
T KOG0056|consen 374 YVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGII 453 (790)
T ss_pred heeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 2222344455667776655544444455677778999999998864 455566666667655444444433333222
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccchhccc
Q 000674 508 WMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRIS 587 (1358)
Q Consensus 508 ~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~ 587 (1358)
... +.....+.+|... .+.+|.+...-.+.....|.+|++.+......+....+-++|+.+.|++++.-.+.....+
T Consensus 454 ~lg--ll~gsll~aY~Vt-~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~p 530 (790)
T KOG0056|consen 454 GLG--LLAGSLLCAYRVT-EQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPP 530 (790)
T ss_pred hhH--Hhhhhheeeeeee-eccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCC
Confidence 221 1222233344444 3788888866667778889999999999999999999999999999876542211111122
Q ss_pred ccCCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------
Q 000674 588 LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1358)
Q Consensus 588 ~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------- 658 (1358)
.....+.|+++|++|+|+++ +|+|+||||++++|+.+|+|||+|+||||+++.+.+.++.++|.|.++|
T Consensus 531 l~~~~G~i~fsnvtF~Y~p~--k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~ 608 (790)
T KOG0056|consen 531 LKVTQGKIEFSNVTFAYDPG--KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQS 608 (790)
T ss_pred ccccCCeEEEEEeEEecCCC--CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHH
Confidence 23356789999999999875 6899999999999999999999999999999999999999999999998
Q ss_pred ----eEEEEeCCCCCCCCCHHHHHhcCCCC-CHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHH
Q 000674 659 ----SIAYVSQTSWIQSGSIRDNILYGKPM-DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1358)
Q Consensus 659 ----~i~yv~Q~~~~~~~tv~eni~~g~~~-~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARa 733 (1358)
+||.|||+..+||.||..||.++++- ..|...++.+++++++.+-.+|+|+.|.+||+|..|||||||||++||+
T Consensus 609 SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARt 688 (790)
T KOG0056|consen 609 SLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIART 688 (790)
T ss_pred HHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHH
Confidence 49999999999999999999999873 3455667888999999999999999999999999999999999999999
Q ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHHhc-CchH
Q 000674 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA-GTAF 812 (1358)
Q Consensus 734 l~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~ 812 (1358)
+..+|.+++|||.|||||.++++.| +.+......++|.|+|.|+++.+-+||.|++++||+|+|.|+++|+..+ ++.+
T Consensus 689 iLK~P~iIlLDEATSALDT~tER~I-QaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Y 767 (790)
T KOG0056|consen 689 ILKAPSIILLDEATSALDTNTERAI-QAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAY 767 (790)
T ss_pred HhcCCcEEEEcchhhhcCCccHHHH-HHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcH
Confidence 9999999999999999999999997 4566666789999999999999999999999999999999999999987 7788
Q ss_pred HHHHHhhh
Q 000674 813 EQLVNAHR 820 (1358)
Q Consensus 813 ~~~~~~~~ 820 (1358)
+++.+.+.
T Consensus 768 a~MWq~qq 775 (790)
T KOG0056|consen 768 ADMWQAQQ 775 (790)
T ss_pred HHHHHHHH
Confidence 88886543
No 49
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=6.4e-54 Score=543.52 Aligned_cols=460 Identities=18% Similarity=0.141 Sum_probs=358.3
Q ss_pred HHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---C--CCc-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 887 KPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI---P--KIT-SGILIGVYAGVSTASAVFVYFRSFFAA 960 (1358)
Q Consensus 887 ~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~---~--~~~-~~~~l~iy~~l~~~~~i~~~~~~~~~~ 960 (1358)
+.+++|++..++... +.+++.++...+....++.+...++. + +.. ...++.+++++.++..++.+++.++..
T Consensus 11 ~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (588)
T PRK11174 11 RWLKQQSKPAKRWLN--LSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGF 88 (588)
T ss_pred HHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666665433322 22223333334444455544443331 1 111 112333445555667777888889999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcccccccChhhHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000674 961 HLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVV 1040 (1358)
Q Consensus 961 ~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~i~v~~~~~~~l~~~ 1040 (1358)
..+.+...+++.++++++++.|.+||++.++|++++|+++|++.++..+...+..++..++.+++.++++++++|.++++
T Consensus 89 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~ 168 (588)
T PRK11174 89 KAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLI 168 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888888888888888888899999999887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000674 1041 AIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEW 1120 (1358)
Q Consensus 1041 ~l~~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~G~~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1120 (1358)
++.++++..++...+.+..++..+...+..+.+.+++.|+++|+++||+|+.|+++.+++.+..++..+..........+
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (588)
T PRK11174 169 LLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFL 248 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766666666777777777777777778888999999999999999999999999999999888877766655554444
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHhcCCccchhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 000674 1121 LILRVEALQNLTLFTAA-LFLVLIPRGYVAPGLV---------GLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQF 1190 (1358)
Q Consensus 1121 l~~~l~~l~~~~~~~~~-~~~~l~~~g~is~g~~---------gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~ 1190 (1358)
......++..+.++++. +++... .|.++.|.+ .+++.++..+..|+..+...+..+.....+.+|+.++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~ 327 (588)
T PRK11174 249 SSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTF 327 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433322221 122222 355665532 2333566778899999999999999999999999999
Q ss_pred hcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCC
Q 000674 1191 MHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPA 1270 (1358)
Q Consensus 1191 ~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~ 1270 (1358)
++.|++.+. ++. .+...+..++|+|+||+|.|.++ ++||+|+||+|+|||++||||+||||||||+++|.|+| |+
T Consensus 328 l~~~~~~~~--~~~-~~~~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~ 402 (588)
T PRK11174 328 LETPLAHPQ--QGE-KELASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY 402 (588)
T ss_pred HcCCCcccC--CCc-cccCCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC
Confidence 987765321 111 11111234689999999988655 46999999999999999999999999999999999999 99
Q ss_pred CCEEEEcCEeCCCCChHHHhhcCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCccccccccC
Q 000674 1271 GGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSEQIT 1349 (1358)
Q Consensus 1271 ~G~I~IDGvDI~~i~l~~LRs~IsiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~Gldt~v~e~ 1349 (1358)
+|+|++||+|+++++.+++|++|++|||||+||+|||||||..++ +++|||+++|++.|++++||+++|+||||.|||+
T Consensus 403 ~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 403 QGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred CcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccC
Confidence 999999999999999999999999999999999999999997653 5899999999999999999999999999999999
Q ss_pred CcCCCC
Q 000674 1350 YDYGWS 1355 (1358)
Q Consensus 1350 g~~n~s 1355 (1358)
|. |-|
T Consensus 483 G~-~LS 487 (588)
T PRK11174 483 AA-GLS 487 (588)
T ss_pred CC-CCC
Confidence 98 766
No 50
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=6e-54 Score=553.92 Aligned_cols=462 Identities=18% Similarity=0.207 Sum_probs=369.5
Q ss_pred HHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--CCCc--h-hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 886 WKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI--PKIT--S-GILIGVYAGVSTASAVFVYFRSFFAA 960 (1358)
Q Consensus 886 ~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~--~~~~--~-~~~l~iy~~l~~~~~i~~~~~~~~~~ 960 (1358)
++.++.|++..+.... ..+++.++...+.++.++++....+. ++.. . ..+..+++++.++..++.+++.++..
T Consensus 144 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (708)
T TIGR01193 144 LLKFIPLITRQKKLIV--NIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLN 221 (708)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666664433322 22233333444555566666655542 1111 1 11223344445566778888999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcccccccChhhHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000674 961 HLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVV 1040 (1358)
Q Consensus 961 ~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~i~v~~~~~~~l~~~ 1040 (1358)
+.+.+...+++.++++++++.|++||++.++|++++|++ |.+.+...+...+...+..++.+++.++++++.+|+++++
T Consensus 222 ~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 300 (708)
T TIGR01193 222 VLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLL 300 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999999999999998 8888877776666666666666777777888899998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000674 1041 AIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEW 1120 (1358)
Q Consensus 1041 ~l~~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~G~~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1120 (1358)
++..++++..+...+.+..++..+......+...+++.|+++|+.+||+||.|+++.+++.+..++..+..+.......+
T Consensus 301 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (708)
T TIGR01193 301 SLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQG 380 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777778888888888888889999999999999999999999999999988888777666655444444
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCC
Q 000674 1121 LILRVEALQNLTL-FTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPA 1199 (1358)
Q Consensus 1121 l~~~l~~l~~~~~-~~~~~~~~l~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~ 1199 (1358)
......++..+.. ++..+.+.++..|.+|.|.+.++.++...+..|+..+...+.+++....+++|+.++++.|+|.+.
T Consensus 381 ~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~ 460 (708)
T TIGR01193 381 QQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFIN 460 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 4333333332222 222233445568999999999999999999999999999999999999999999999988877532
Q ss_pred CcCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCE
Q 000674 1200 IVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGV 1279 (1358)
Q Consensus 1200 ~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGv 1279 (1358)
. ......++..|.|+|+||+|+|+++ +++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|+|||+
T Consensus 461 ~---~~~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~ 536 (708)
T TIGR01193 461 K---KKRTELNNLNGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGF 536 (708)
T ss_pred c---ccccCCCCCCCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCE
Confidence 1 1112234557899999999999644 56999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHHhhcCceecccccccccchhhhcCCC--CCCCHHHHHHHHHHcCCchHHhcCCCccccccccCCcCCCC
Q 000674 1280 DICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL--GLYSDDEIWKALEKCQLKTTISSLPNKLDSSEQITYDYGWS 1355 (1358)
Q Consensus 1280 DI~~i~l~~LRs~IsiVpQdp~LF~GTIR~NLdp~--~~~sDeeI~~AL~~a~l~~~I~~Lp~Gldt~v~e~g~~n~s 1355 (1358)
|+++++.+++|++|++|||||+||+|||||||..+ .+++|+|+++|++.++++++|+++|+||||.++|+|. |-|
T Consensus 537 ~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~-~LS 613 (708)
T TIGR01193 537 SLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGS-SIS 613 (708)
T ss_pred EHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCC-CCC
Confidence 99999999999999999999999999999999765 3589999999999999999999999999999999998 776
No 51
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.4e-53 Score=551.21 Aligned_cols=467 Identities=18% Similarity=0.192 Sum_probs=377.1
Q ss_pred HHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcC----CCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 886 WKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI----PKIT-SGILIGVYAGVSTASAVFVYFRSFFAA 960 (1358)
Q Consensus 886 ~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~----~~~~-~~~~l~iy~~l~~~~~i~~~~~~~~~~ 960 (1358)
++.++.+++..++... ..+++.++...+.++.++.+...++. .... ...+...++++.++..++.+++.++..
T Consensus 142 ~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (710)
T TIGR03796 142 LRALWRRLRGSRGALL--YLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLR 219 (710)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666664433222 22222233334444455555544432 1111 112233444555667788888999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcccccccChhhHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000674 961 HLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVV 1040 (1358)
Q Consensus 961 ~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~i~v~~~~~~~l~~~ 1040 (1358)
..+.+...+++.++++++++.|++||++.++|++++|++.| +.+...+...+..++..++.+++.++++++.+|+++++
T Consensus 220 ~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 298 (710)
T TIGR03796 220 RLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLI 298 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998 56877777777777888888888888999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000674 1041 AIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEW 1120 (1358)
Q Consensus 1041 ~l~~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~G~~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1120 (1358)
++..++++.++..++.+..++..+......+...+++.|+++|+.+||+++.|+.+.+++.+..++..+..........+
T Consensus 299 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (710)
T TIGR03796 299 GIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQI 378 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777777777777777777777777777888999999999999999999999999999998888877777766666666
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCC
Q 000674 1121 LILRVEALQNLTLFTA-ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPA 1199 (1358)
Q Consensus 1121 l~~~l~~l~~~~~~~~-~~~~~l~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~ 1199 (1358)
......++..+..+++ .+.+.++..|.++.|.+.++.+++..+..++..+...+.+++....+.+|+.++++.|+|.+.
T Consensus 379 ~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 458 (710)
T TIGR03796 379 LGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLL 458 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 6655555554433332 223445668999999999999999999999999999999999999999999999988776532
Q ss_pred CcCC--C-CCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEE
Q 000674 1200 IVED--K-RPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI 1276 (1358)
Q Consensus 1200 ~~~~--~-~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~I 1276 (1358)
.... . .....++..|.|+|+||+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|.+
T Consensus 459 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 538 (710)
T TIGR03796 459 EEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILF 538 (710)
T ss_pred ccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 1100 0 011113456899999999999876667999999999999999999999999999999999999999999999
Q ss_pred cCEeCCCCChHHHhhcCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCccccccccCCcCCCC
Q 000674 1277 DGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSEQITYDYGWS 1355 (1358)
Q Consensus 1277 DGvDI~~i~l~~LRs~IsiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~Gldt~v~e~g~~n~s 1355 (1358)
||+|+++++.+++|++|++|||||.||+|||||||..++ +++|+++++|++.++++++|.++|+||||.++|+|. |.|
T Consensus 539 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~-~LS 617 (710)
T TIGR03796 539 DGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGA-NLS 617 (710)
T ss_pred CCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCC-CCC
Confidence 999999999999999999999999999999999997654 589999999999999999999999999999999998 877
Q ss_pred C
Q 000674 1356 S 1356 (1358)
Q Consensus 1356 ~ 1356 (1358)
-
T Consensus 618 G 618 (710)
T TIGR03796 618 G 618 (710)
T ss_pred H
Confidence 3
No 52
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=4.6e-52 Score=520.72 Aligned_cols=506 Identities=16% Similarity=0.170 Sum_probs=348.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 267 VRKVITNVYLKENIFIAICALLRTIAVVVG-PLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRS 345 (1358)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 345 (1358)
+.+.+++.+++.++...++.++..++..+. |++...+++..... ...-+.+++.+++..++.. ...+...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~---~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 75 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTS---LLVLPEFLGLLLLLMAVTL----GSQLALTTL 75 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---chHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 455667777888888888888888887764 67767777644221 1111111111111211111 122334455
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000674 346 GMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLV 425 (1358)
Q Consensus 346 ~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~ 425 (1358)
+.++...+...+|+|.++++....++.++|+++|.++.|++.+..+...+..++...+.++++++++++.-+..+++.++
T Consensus 76 ~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 155 (547)
T PRK10522 76 GHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAWLSPKMLLVTAI 155 (547)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 66666667777788888887655567789999999999999998765556667777777777777666543333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc--h----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 426 LFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQS--W----EEKFKSLIESRREKEFKWLSEAQLR 499 (1358)
Q Consensus 426 v~~~~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~--w----E~~f~~~i~~~R~~El~~l~~~~~~ 499 (1358)
++.+...+...+.++.++..++.++..+++.+.++|.++|++++++.. . ++.|.+..++.++...+..+ .
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 231 (547)
T PRK10522 156 WMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRADT----F 231 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHHH----H
Confidence 333334445566777788888889999999999999999999998433 2 23333433434333332211 1
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 000674 500 KAYGTVIYWMSPTI-ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHEL 578 (1358)
Q Consensus 500 ~~~~~~~~~~~p~~-v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~ 578 (1358)
.............+ +....+.... .+...++...++ ......+..|+..+...+..+.+++++.+|+.+++..++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~ 308 (547)
T PRK10522 232 HLSAVNWSNIMMLGAIGLVFYMANS-LGWADTNVAATY--SLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYK 308 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hhcCChHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 11111110011111 1111111111 111222222222 2222335689999999999999999999999999754432
Q ss_pred CccchhcccccCCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC
Q 000674 579 NNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG 658 (1358)
Q Consensus 579 ~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g 658 (1358)
++.. +..+ .+..+.++++|++|+|+.+ .++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 309 ~~~~-~~~~-~~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g 384 (547)
T PRK10522 309 AEFP-RPQA-FPDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDG 384 (547)
T ss_pred cccc-cccc-cCcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC
Confidence 1101 1111 1112479999999999743 4699999999999999999999999999999999999999999999987
Q ss_pred -------------eEEEEeCCCCCCCCCHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHH
Q 000674 659 -------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1358)
Q Consensus 659 -------------~i~yv~Q~~~~~~~tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 725 (1358)
+++|++|+|.++++|++|| +...++++.++.++.+++..+++. ++|. .+|.+||||||
T Consensus 385 ~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LSgGq~ 455 (547)
T PRK10522 385 KPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLSKGQK 455 (547)
T ss_pred EECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCCHHHH
Confidence 4999999999999999999 445566677777777777665542 2221 24789999999
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhccCeEEEEeCCeEEEe
Q 000674 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1358)
Q Consensus 726 qRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1358)
||++||||++++|+++|||||||+||+++++.+.+.+..... +++|+|+|||+++.+..||+|++|++|++++.
T Consensus 456 qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 456 KRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999998877654432 58999999999999999999999999999875
No 53
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=7.8e-53 Score=533.71 Aligned_cols=408 Identities=22% Similarity=0.308 Sum_probs=339.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccChhhHHHHHhcCHHHHHhhcHHHHHHHHHHH
Q 000674 941 YAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASG 1020 (1358)
Q Consensus 941 y~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~D~~~id~~l~~~l~~~~~~~ 1020 (1358)
++++.++..++.+++.+.....+.+...+++.+++++++++|.+||+..++|++++|+++|++.++..+...+..++..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~ 150 (592)
T PRK10790 71 YVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSA 150 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444456667778888889999999999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHH
Q 000674 1021 TELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNY 1100 (1358)
Q Consensus 1021 ~~~l~~i~v~~~~~~~l~~~~l~~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~G~~tIRAf~~e~~f~~~~ 1100 (1358)
+.+++.++++++.+|.+.++.+..+++...+...+.+..+...+......+...+++.|+++|+.+||+|+.++++.+++
T Consensus 151 ~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~ 230 (592)
T PRK10790 151 ALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERM 230 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHH
Confidence 88888888888999998776655444444445555555566666666677788999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 1101 LKLVDIDASLFFHTNGVMEWL-ILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLAN 1179 (1358)
Q Consensus 1101 ~~~~d~~~~~~~~~~~~~~wl-~~~l~~l~~~~~~~~~~~~~l~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~ 1179 (1358)
.+..++..+..........+. .....++..+..+++.+.......|.++.|.+.+++.|...+..|+..+...+.++++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~ 310 (592)
T PRK10790 231 GEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQ 310 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988777666655444433332 2223333322222221111123578999999999999999999999999999999999
Q ss_pred HhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHH
Q 000674 1180 YIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTL 1259 (1358)
Q Consensus 1180 ~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL 1259 (1358)
...+.+|+.++++.++++.. .. ..++..|+|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||
T Consensus 311 ~~~s~~ri~~~l~~~~~~~~---~~---~~~~~~~~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTL 383 (592)
T PRK10790 311 AVVAGERVFELMDGPRQQYG---ND---DRPLQSGRIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTL 383 (592)
T ss_pred HHHHHHHHHHHhcCCCccCC---CC---ccCCCCCeEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHH
Confidence 99999999999987654321 11 112345789999999999754 469999999999999999999999999999
Q ss_pred HHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCceecccccccccchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCC
Q 000674 1260 ISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLP 1339 (1358)
Q Consensus 1260 ~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~IsiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp 1339 (1358)
+++|.|+|+|++|+|.+||+|+++++.+++|++|++|||||.||+||||+||..+++++|+|+++|++++|++++|+++|
T Consensus 384 l~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp 463 (592)
T PRK10790 384 ASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLP 463 (592)
T ss_pred HHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999887889999999999999999999999
Q ss_pred CccccccccCCcCCCCC
Q 000674 1340 NKLDSSEQITYDYGWSS 1356 (1358)
Q Consensus 1340 ~Gldt~v~e~g~~n~s~ 1356 (1358)
+||||.++|+|. |.|-
T Consensus 464 ~Gldt~i~e~g~-~LSG 479 (592)
T PRK10790 464 DGLYTPLGEQGN-NLSV 479 (592)
T ss_pred ccccccccCCCC-CCCH
Confidence 999999999998 8773
No 54
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=8.9e-53 Score=541.86 Aligned_cols=463 Identities=21% Similarity=0.222 Sum_probs=369.9
Q ss_pred HHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--CCC--chh-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 886 WKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI--PKI--TSG-ILIGVYAGVSTASAVFVYFRSFFAA 960 (1358)
Q Consensus 886 ~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~--~~~--~~~-~~l~iy~~l~~~~~i~~~~~~~~~~ 960 (1358)
++.++.+++..++... ..+++.++...+.++.++.+...++. +.. ... .+..+++++.++..++.+++.++..
T Consensus 135 ~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (694)
T TIGR03375 135 KHWFWSTLKESWPLYR--DVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLD 212 (694)
T ss_pred chHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566654333222 22222233334445555555544432 111 111 1222334445566778888999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcccccccChhhHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000674 961 HLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVV 1040 (1358)
Q Consensus 961 ~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~i~v~~~~~~~l~~~ 1040 (1358)
+.+.+...+++.++++|+++.|++| ++.++|++++|+ +|++.+...+...+...+..++.+++.++++++++|.++++
T Consensus 213 ~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 290 (694)
T TIGR03375 213 VAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWV 290 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999998 788999999999 79999999888777777777777777778888899999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000674 1041 AIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEW 1120 (1358)
Q Consensus 1041 ~l~~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~G~~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1120 (1358)
.+..++++..+..++.+..++..+......+...+++.|+++|+.+||+|+.|+.+.+++.+..++..+..+.......+
T Consensus 291 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (694)
T TIGR03375 291 PLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNL 370 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777778889999999999999999999999999999999988887777666665555
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCC
Q 000674 1121 LILRVEALQNLTLFT-AALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPA 1199 (1358)
Q Consensus 1121 l~~~l~~l~~~~~~~-~~~~~~l~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~ 1199 (1358)
......++..+..++ ..+.+.++..|.++.|.+.+++++...+..|+..+...+.+++....+.+|+.++++.|+|.+.
T Consensus 371 ~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 450 (694)
T TIGR03375 371 ATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPE 450 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 554444444332222 2223345568999999999999999999999999999999999999999999999998776432
Q ss_pred CcCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCE
Q 000674 1200 IVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGV 1279 (1358)
Q Consensus 1200 ~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGv 1279 (1358)
. .......+..|.|+|+||+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|.+||+
T Consensus 451 ~---~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~ 527 (694)
T TIGR03375 451 G---TRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGV 527 (694)
T ss_pred C---CCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 1 1111112346889999999999766667999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHHhhcCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCccccccccCCcCCCCC
Q 000674 1280 DICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSEQITYDYGWSS 1356 (1358)
Q Consensus 1280 DI~~i~l~~LRs~IsiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~Gldt~v~e~g~~n~s~ 1356 (1358)
|+++++++++|++|++|||||++|+|||||||...+ +++|+|+++|++.++++++|+++|+||||.++|+|. |-|-
T Consensus 528 ~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~-~LSg 604 (694)
T TIGR03375 528 DIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGR-SLSG 604 (694)
T ss_pred EhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCC-CCCH
Confidence 999999999999999999999999999999998655 489999999999999999999999999999999998 8763
No 55
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=2.9e-52 Score=521.85 Aligned_cols=412 Identities=18% Similarity=0.196 Sum_probs=347.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccChhhHHHHHhcCHHHHHhhcHHHHHHHH
Q 000674 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVA 1017 (1358)
Q Consensus 938 l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~D~~~id~~l~~~l~~~~ 1017 (1358)
.+++++++++..++.+++.++..+.+.+...+++.++++++++.|.+||++.++|++++|+++|++.++..+...+..++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~ 126 (529)
T TIGR02857 47 LGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLV 126 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44455566677788888999999999999999999999999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHH
Q 000674 1018 ASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFF 1097 (1358)
Q Consensus 1018 ~~~~~~l~~i~v~~~~~~~l~~~~l~~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~G~~tIRAf~~e~~f~ 1097 (1358)
..++.+++.+++++..+|.++++++..+++..++...+.+..++..+......+...+++.|+++|+++||+|+.|+++.
T Consensus 127 ~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~ 206 (529)
T TIGR02857 127 LAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQA 206 (529)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHH
Confidence 88888888888888999988777665555555555555555555566666677788999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 1098 QNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTA-ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCY 1176 (1358)
Q Consensus 1098 ~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~-~~~~~l~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~ 1176 (1358)
+++.+..++..+..........+.....+++..+..+++ .+.++.+..|.++.|.+.+++.|+..+..++..+...+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~ 286 (529)
T TIGR02857 207 AAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHA 286 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888777766666556665555555554433332 2233334478999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccH
Q 000674 1177 LANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGK 1256 (1358)
Q Consensus 1177 le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGK 1256 (1358)
++....+.+|+.++++.+++... . .+...+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+|||||
T Consensus 287 ~~~~~~~~~ri~~ll~~~~~~~~---~--~~~~~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGK 361 (529)
T TIGR02857 287 RADGVAAAEALFAVLDAPRPLAG---K--APVTAAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGK 361 (529)
T ss_pred HHHHHHHHHHHHHHhCCCcccCC---C--cCCCCCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCH
Confidence 99999999999999985543221 1 111122346899999999997655579999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHH
Q 000674 1257 TTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTI 1335 (1358)
Q Consensus 1257 STL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~IsiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I 1335 (1358)
|||+++|.|+|+|++|+|.+||+|+++++.+++|+++++|||||++|+|||||||.... +++|+|+++|++.+++++++
T Consensus 362 STL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i 441 (529)
T TIGR02857 362 STLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFV 441 (529)
T ss_pred HHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999997543 57999999999999999999
Q ss_pred hcCCCccccccccCCcCCCC
Q 000674 1336 SSLPNKLDSSEQITYDYGWS 1355 (1358)
Q Consensus 1336 ~~Lp~Gldt~v~e~g~~n~s 1355 (1358)
+++|+||||.++|+|. |-|
T Consensus 442 ~~lp~Gldt~v~e~g~-~LS 460 (529)
T TIGR02857 442 AALPQGLDTLIGEGGA-GLS 460 (529)
T ss_pred HhCcccccchhccccc-cCC
Confidence 9999999999999998 765
No 56
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=4.1e-52 Score=523.15 Aligned_cols=409 Identities=18% Similarity=0.167 Sum_probs=342.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccChhhHHHHHhcCHHHHHhhcHHHHHHHHHHH
Q 000674 941 YAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASG 1020 (1358)
Q Consensus 941 y~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~D~~~id~~l~~~l~~~~~~~ 1020 (1358)
+.++.++..++.++..++....+.+...++|.++++++++.|++||++.++|++++|+++|++.++..+...+..++..+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~ 145 (574)
T PRK11160 66 VRGAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAAL 145 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566777888888889999999999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHH
Q 000674 1021 TELLAIIGIMTFVTWQVLVVAIFAMVAVR-FVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQN 1099 (1358)
Q Consensus 1021 ~~~l~~i~v~~~~~~~l~~~~l~~~~~~~-~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~G~~tIRAf~~e~~f~~~ 1099 (1358)
+.+++.++++++.+|+++++++.++++.. .+..++.+..++..+......+.+.+.+.|+++|+++||+|+.|+++.++
T Consensus 146 ~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~ 225 (574)
T PRK11160 146 VVILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQ 225 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHH
Confidence 88999999999999999887654444433 34455666667777777788889999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 000674 1100 YLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFT-LTGTQVFLSRWYCYLA 1178 (1358)
Q Consensus 1100 ~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~l~~~g~is~g~~gl~l~ya~~-l~~~l~~l~~~~~~le 1178 (1358)
+.+..++..+..........+.....+++..+..+++..++.....|.++.|.+..++.|+.. ...++..+...+..++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~ 305 (574)
T PRK11160 226 LEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGGVGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLG 305 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888877777666666655555555443333322222223688889988887777544 4467777888889999
Q ss_pred HHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHH
Q 000674 1179 NYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTT 1258 (1358)
Q Consensus 1179 ~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKST 1258 (1358)
....|.+|+.++++.++|.+.. ...++ .+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+|||||||
T Consensus 306 ~~~~s~~ri~~ll~~~~~~~~~--~~~~~--~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKST 381 (574)
T PRK11160 306 QVIASARRINEITEQKPEVTFP--TTSTA--AADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKST 381 (574)
T ss_pred HHHHHHHHHHHHHhCCCCCCCC--cccCC--CCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHH
Confidence 9999999999999877653211 11111 1345789999999999765456999999999999999999999999999
Q ss_pred HHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhc
Q 000674 1259 LISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISS 1337 (1358)
Q Consensus 1259 L~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~IsiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~ 1337 (1358)
|+++|.|+|+|++|+|++||+|+++++.+++|++|++|||||+||+|||||||.... +.+|+|+++|++++++++++++
T Consensus 382 L~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~ 461 (574)
T PRK11160 382 LLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED 461 (574)
T ss_pred HHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC
Confidence 999999999999999999999999999999999999999999999999999996543 5799999999999999999999
Q ss_pred CCCccccccccCCcCCCC
Q 000674 1338 LPNKLDSSEQITYDYGWS 1355 (1358)
Q Consensus 1338 Lp~Gldt~v~e~g~~n~s 1355 (1358)
|+||||.+||+|. |-|
T Consensus 462 -p~GldT~vge~g~-~LS 477 (574)
T PRK11160 462 -DKGLNAWLGEGGR-QLS 477 (574)
T ss_pred -ccccCchhcCCCC-CCC
Confidence 9999999999998 766
No 57
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=6.1e-52 Score=524.52 Aligned_cols=413 Identities=19% Similarity=0.296 Sum_probs=365.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccChhhHHHHHhcCHHHHHhhcHHHHHHHH
Q 000674 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVA 1017 (1358)
Q Consensus 938 l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~D~~~id~~l~~~l~~~~ 1017 (1358)
.++++++.++..++.+++.++....+.+....++..+++++++.|.++|++.+.|++++|+++|++.++..+...+..++
T Consensus 57 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i 136 (571)
T TIGR02203 57 PLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLV 136 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466666777788888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHH
Q 000674 1018 ASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFF 1097 (1358)
Q Consensus 1018 ~~~~~~l~~i~v~~~~~~~l~~~~l~~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~G~~tIRAf~~e~~f~ 1097 (1358)
..++.+++.++++++.+|+++++++.+++++.++..++.+..++..+...+..++..+.+.|+++|+.+||+++.++++.
T Consensus 137 ~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~ 216 (571)
T TIGR02203 137 RETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYET 216 (571)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHH
Confidence 99999999999999999999998888888888888888888888888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 1098 QNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAA-LFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCY 1176 (1358)
Q Consensus 1098 ~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~-~~~~l~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~ 1176 (1358)
+++.+..+...+..........+......++..+...++. +.+..+..|.+++|.+..+.+++..+..|+..+...+..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~ 296 (571)
T TIGR02203 217 RRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAP 296 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888777777776666665555544333222 233455689999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccH
Q 000674 1177 LANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGK 1256 (1358)
Q Consensus 1177 le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGK 1256 (1358)
++....+.+|+.++++.++|.+. +..+.. +..++|+|+||+|+|+++.+++|+|+||+|+|||+|||||+|||||
T Consensus 297 ~~~~~~~~~ri~~~l~~~~~~~~---~~~~~~--~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGK 371 (571)
T TIGR02203 297 MQRGLAAAESLFTLLDSPPEKDT---GTRAIE--RARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGK 371 (571)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCC---CCCCCC--CCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCH
Confidence 99999999999999987665432 111111 2457899999999997655679999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCceecccccccccchhhhcCCCC--CCCHHHHHHHHHHcCCchH
Q 000674 1257 TTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG--LYSDDEIWKALEKCQLKTT 1334 (1358)
Q Consensus 1257 STL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~IsiVpQdp~LF~GTIR~NLdp~~--~~sDeeI~~AL~~a~l~~~ 1334 (1358)
|||+++|.|+++|++|+|++||+|+++++.+++|+++++|||||++|+||||+||.-++ +++|+|+++||++++++++
T Consensus 372 STLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~ 451 (571)
T TIGR02203 372 STLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDF 451 (571)
T ss_pred HHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHH
Confidence 99999999999999999999999999999999999999999999999999999997553 5899999999999999999
Q ss_pred HhcCCCccccccccCCcCCCCC
Q 000674 1335 ISSLPNKLDSSEQITYDYGWSS 1356 (1358)
Q Consensus 1335 I~~Lp~Gldt~v~e~g~~n~s~ 1356 (1358)
+.++|+||||.++|+|. |.|-
T Consensus 452 i~~lp~gldt~i~~~g~-~LSg 472 (571)
T TIGR02203 452 VDKLPLGLDTPIGENGV-LLSG 472 (571)
T ss_pred HHhCcCcccceecCCCC-cCCH
Confidence 99999999999999998 8884
No 58
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=8.6e-52 Score=523.79 Aligned_cols=408 Identities=18% Similarity=0.240 Sum_probs=353.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccChhhHHHHHhcCHHHHHhhcHHHHHHHHHHHH
Q 000674 942 AGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGT 1021 (1358)
Q Consensus 942 ~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~D~~~id~~l~~~l~~~~~~~~ 1021 (1358)
+++.++..++.+++.++....+.+....++.++++++++.|.++|++...|++++|+++|++.+...+...+..++..++
T Consensus 72 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~ 151 (582)
T PRK11176 72 IGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGA 151 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777788888888999999999999999999999999999999999999999999999998888888888999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHH
Q 000674 1022 ELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYL 1101 (1358)
Q Consensus 1022 ~~l~~i~v~~~~~~~l~~~~l~~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~G~~tIRAf~~e~~f~~~~~ 1101 (1358)
.+++.++++++.+|.++++++..++++.++..+..+..++..+......+...+++.|.++|+.+||+|+.++++.+++.
T Consensus 152 ~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~ 231 (582)
T PRK11176 152 SIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFD 231 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHH
Confidence 99999999999999988877776666666666677776777777777788899999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 1102 KLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAAL-FLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANY 1180 (1358)
Q Consensus 1102 ~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~-~~~l~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~ 1180 (1358)
+..+...+..........+.....+++..+...++.+ .+..+..|.+++|.+.+++++...+..|+..+...+..++..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~ 311 (582)
T PRK11176 232 KVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRG 311 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888887777777776666666655443333222 234456789999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHH
Q 000674 1181 IISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLI 1260 (1358)
Q Consensus 1181 ~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~ 1260 (1358)
..+.+|+.++++.++|.+. +. ....|..+.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+
T Consensus 312 ~~~~~ri~~~~~~~~~~~~---~~--~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl 386 (582)
T PRK11176 312 MAACQTLFAILDLEQEKDE---GK--RVIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIA 386 (582)
T ss_pred HHHHHHHHHHhcCCCcCCC---CC--cCCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHH
Confidence 9999999999987665321 11 111244578999999999976656799999999999999999999999999999
Q ss_pred HHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCceecccccccccchhhhcCCC--CCCCHHHHHHHHHHcCCchHHhcC
Q 000674 1261 SALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL--GLYSDDEIWKALEKCQLKTTISSL 1338 (1358)
Q Consensus 1261 ~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~IsiVpQdp~LF~GTIR~NLdp~--~~~sDeeI~~AL~~a~l~~~I~~L 1338 (1358)
++|+|+|+|++|+|++||+|+++++.+++|++|++|||||++|+||||+||.-. ++++|+|+++|++.++++++++++
T Consensus 387 ~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~l 466 (582)
T PRK11176 387 NLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKM 466 (582)
T ss_pred HHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999742 348999999999999999999999
Q ss_pred CCccccccccCCcCCCC
Q 000674 1339 PNKLDSSEQITYDYGWS 1355 (1358)
Q Consensus 1339 p~Gldt~v~e~g~~n~s 1355 (1358)
|+||||.+||+|. |.|
T Consensus 467 p~Gldt~ig~~g~-~LS 482 (582)
T PRK11176 467 DNGLDTVIGENGV-LLS 482 (582)
T ss_pred ccccCceeCCCCC-cCC
Confidence 9999999999998 877
No 59
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.9e-51 Score=529.15 Aligned_cols=464 Identities=20% Similarity=0.261 Sum_probs=370.6
Q ss_pred cHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--CC--Cch-hHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 885 GWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI--PK--ITS-GILIGVYAGVSTASAVFVYFRSFFA 959 (1358)
Q Consensus 885 ~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~--~~--~~~-~~~l~iy~~l~~~~~i~~~~~~~~~ 959 (1358)
+++.++.+++..++.+. ..+++.++...+..+.++.+...++. +. ... ..+..+++++.++..++.+++.++.
T Consensus 126 ~~~~~~~~~~~~~~~~~--~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~ 203 (694)
T TIGR01846 126 GFSWFIPAIIRYRKQFR--EVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLF 203 (694)
T ss_pred cHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666654333222 22222233333445555555544432 11 111 1223344555566778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcccccccChhhHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000674 960 AHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLV 1039 (1358)
Q Consensus 960 ~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~i~v~~~~~~~l~~ 1039 (1358)
...+.+...+++.+++++++++|++||++.++|++++|+ +|++.+...+...+..++..++.+++.++++++.+|++++
T Consensus 204 ~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 282 (694)
T TIGR01846 204 AHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTG 282 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 6999999988777766666666666667788899999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000674 1040 VAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVME 1119 (1358)
Q Consensus 1040 ~~l~~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~G~~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1119 (1358)
+++..++++..+..+..+..++..+......+...+++.|+++|+.+||+||.|+++.+++.+..++..+..........
T Consensus 283 i~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (694)
T TIGR01846 283 VVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGN 362 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87766666666655555555555555566677888999999999999999999999999999999988888777777676
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCC
Q 000674 1120 WLILRVEALQNLTLFTAA-LFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPP 1198 (1358)
Q Consensus 1120 wl~~~l~~l~~~~~~~~~-~~~~l~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~ 1198 (1358)
+.....+++..+..+++. +.+.++..|.++.|.+.++.+++..+..|+..+...+.+++....+.+|+.++++.|+|.+
T Consensus 363 ~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 442 (694)
T TIGR01846 363 IAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPR 442 (694)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 766666665544333322 2334556899999999999999999999999999999999999999999999998877643
Q ss_pred CCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcC
Q 000674 1199 AIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG 1278 (1358)
Q Consensus 1199 ~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDG 1278 (1358)
.. +..+. -+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|+|||
T Consensus 443 ~~--~~~~~--~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg 518 (694)
T TIGR01846 443 SA--GLAAL--PELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDG 518 (694)
T ss_pred CC--CCCCC--CCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 21 11111 123578999999999987666799999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHhhcCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCccccccccCCcCCCCC
Q 000674 1279 VDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSEQITYDYGWSS 1356 (1358)
Q Consensus 1279 vDI~~i~l~~LRs~IsiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~Gldt~v~e~g~~n~s~ 1356 (1358)
+|+++++.+++|+++++|||||.+|+|||||||...+ +++|+++++|++.++++++++++|+||||.++|+|. |-|-
T Consensus 519 ~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~-~LSg 596 (694)
T TIGR01846 519 VDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGA-NLSG 596 (694)
T ss_pred EehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCC-CCCH
Confidence 9999999999999999999999999999999997543 579999999999999999999999999999999998 7763
No 60
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=5.4e-50 Score=507.04 Aligned_cols=415 Identities=22% Similarity=0.277 Sum_probs=349.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccChhhHHHHHhcCHHHHHhhcHHHHHHHHH
Q 000674 939 GVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAA 1018 (1358)
Q Consensus 939 ~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~D~~~id~~l~~~l~~~~~ 1018 (1358)
.+++++.++..++.+++.++....+.+....++..+++++++.|.++|+..+.|++++|+++|++.++......+..++.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~ 141 (576)
T TIGR02204 62 AFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALR 141 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445556667778888889999999999999999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHH
Q 000674 1019 SGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQ 1098 (1358)
Q Consensus 1019 ~~~~~l~~i~v~~~~~~~l~~~~l~~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~G~~tIRAf~~e~~f~~ 1098 (1358)
.++.+++.+++++..+|+++++++..++++..+..++.+..+...+.....+....+++.|.++|+.+||+|+.++++.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~ 221 (576)
T TIGR02204 142 NALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERS 221 (576)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHH
Confidence 88888888888999999988777666666666666677777777777778888899999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 1099 NYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFT-AALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYL 1177 (1358)
Q Consensus 1099 ~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~-~~~~~~l~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~l 1177 (1358)
++.+..+...+..........|+......+..+..++ ..+.+..+..|.+++|.+..+..|+..+..++..+...+.++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~ 301 (576)
T TIGR02204 222 RFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGEL 301 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988777766655555555554444433222222 222234456899999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCC-CCccccceEEecCCcEEEEECCCCccH
Q 000674 1178 ANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNA-PLVLKGITCTFSEGTRVGVVGRTGSGK 1256 (1358)
Q Consensus 1178 e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~-~~VLk~Is~~I~~GekVgIVGrTGSGK 1256 (1358)
.....+.+|+.++++.++|.+... ...+..+|..+.|+|+||+|+|+++. +++|+|+||+|+|||++||||+|||||
T Consensus 302 ~~~~~~~~ri~~~l~~~~~~~~~~--~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGK 379 (576)
T TIGR02204 302 QRAAGAAERLIELLQAEPDIKAPA--HPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGK 379 (576)
T ss_pred HHHHHHHHHHHHHhCCCCcCCCCC--CCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCH
Confidence 999999999999998765532111 11112234557899999999997533 569999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHH
Q 000674 1257 TTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTI 1335 (1358)
Q Consensus 1257 STL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~IsiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I 1335 (1358)
|||+++|.|+|+|++|+|.+||+|+++++.+++|++|+++||||++|+||||+||..++ +.+|++++++|+++++++++
T Consensus 380 STLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i 459 (576)
T TIGR02204 380 STLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFI 459 (576)
T ss_pred HHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999998644 47899999999999999999
Q ss_pred hcCCCccccccccCCcCCCCC
Q 000674 1336 SSLPNKLDSSEQITYDYGWSS 1356 (1358)
Q Consensus 1336 ~~Lp~Gldt~v~e~g~~n~s~ 1356 (1358)
+++|+|+||+++|+|. |.|-
T Consensus 460 ~~l~~gl~t~i~~~g~-~LSg 479 (576)
T TIGR02204 460 SALPEGYDTYLGERGV-TLSG 479 (576)
T ss_pred HhCCCCCCceeCCCCC-cCCH
Confidence 9999999999999998 8874
No 61
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=2e-49 Score=501.89 Aligned_cols=446 Identities=18% Similarity=0.205 Sum_probs=351.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCC--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 000674 906 VLAQSGFVGLQAAATYWLAYAIQIP--KITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPM 983 (1358)
Q Consensus 906 ~~~~~~~~~~~~~~~~wl~~~~~~~--~~~~~~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~ 983 (1358)
+++.++...+.+..++++...++.- ......++.+++++.++..+..++......+...+....+..++++++++.|.
T Consensus 25 ~~~~i~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 104 (588)
T PRK13657 25 AVANVLLAAATFAEPILFGRIIDAISGKGDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERIIQLPL 104 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 3334444455556666666554421 11111122233333333333444444444555556666677799999999999
Q ss_pred ccccccChhhHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 984 LFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELI 1063 (1358)
Q Consensus 984 ~fFd~~p~G~IlnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~i~v~~~~~~~l~~~~l~~~~~~~~~~~~y~~~sr~l~ 1063 (1358)
++|++.+.|++++|+++|++.+...+...+..++..++..++.++++++.+|+++++++.+++++..+..++.+..++..
T Consensus 105 ~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~ 184 (588)
T PRK13657 105 AWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKTKDGQ 184 (588)
T ss_pred HHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998877777777777777777777788889999888877777777777888888888888
Q ss_pred HHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000674 1064 RINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTA-ALFLVL 1142 (1358)
Q Consensus 1064 rl~~~~~spl~s~~~Etl~G~~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~-~~~~~l 1142 (1358)
+......+...+++.|+++|+.+||+|+.++.+.+++.+..+...+..........+.....+++..+..+++ .+.+..
T Consensus 185 ~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 264 (588)
T PRK13657 185 AAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGAAL 264 (588)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999999999999999999999999999999988887777665555444444444443333322222 222345
Q ss_pred hcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEE
Q 000674 1143 IPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLK 1222 (1358)
Q Consensus 1143 ~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVs 1222 (1358)
+..|.++.|.+..++.++..+..++..+...+..+.....+.+|+.++++.+++.+.. ++..++. +..+.|+|+||+
T Consensus 265 v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~~~~~~~--~~~~~I~~~~vs 341 (588)
T PRK13657 265 VQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP-PGAIDLG--RVKGAVEFDDVS 341 (588)
T ss_pred HHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-CCCCCcC--CCCCeEEEEEEE
Confidence 5689999999999999999999999999999999999999999999998765442211 1111111 235689999999
Q ss_pred EEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCceecccccc
Q 000674 1223 IRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTL 1302 (1358)
Q Consensus 1223 f~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~IsiVpQdp~L 1302 (1358)
|+|+++ +++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|.+||+|+++++.+++|++|++|||||.|
T Consensus 342 f~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 420 (588)
T PRK13657 342 FSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGL 420 (588)
T ss_pred EEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCccc
Confidence 999643 4699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCccccccccCCcCCCCC
Q 000674 1303 FRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSEQITYDYGWSS 1356 (1358)
Q Consensus 1303 F~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~Gldt~v~e~g~~n~s~ 1356 (1358)
|+||||+||..+. +.+|+|+++|++++++++++.++|+||||.++|+|. |.|-
T Consensus 421 f~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~-~LSg 474 (588)
T PRK13657 421 FNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGR-QLSG 474 (588)
T ss_pred ccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCC-CCCH
Confidence 9999999997543 578999999999999999999999999999999998 8773
No 62
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.7e-52 Score=465.02 Aligned_cols=406 Identities=18% Similarity=0.286 Sum_probs=326.5
Q ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccChhhHHHHHhcCHHHHHhhcH
Q 000674 937 LIGVYAGVSTA------SAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIP 1010 (1358)
Q Consensus 937 ~l~iy~~l~~~------~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~D~~~id~~l~ 1010 (1358)
....|..+.++ ++++.-+|+++......-+.+++-.++++|+..+.++|+-...+|+++.-+.+-.+.+. .+.
T Consensus 255 ~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~ 333 (790)
T KOG0056|consen 255 LVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLE 333 (790)
T ss_pred HHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHH
Confidence 34445555443 35667778888888888899999999999999999999999999999888877777666 455
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhccchHHHHHHHHhcchH
Q 000674 1011 FSIVFVAASGTELLAIIGIM-TFVTWQVLVVAIFAMVAVRFVQR----YYIATARELIRINGTTKAPVMNYTAETSQGVV 1085 (1358)
Q Consensus 1011 ~~l~~~~~~~~~~l~~i~v~-~~~~~~l~~~~l~~~~~~~~~~~----~y~~~sr~l~rl~~~~~spl~s~~~Etl~G~~ 1085 (1358)
..+..+...++.+.+.++.. ...+|++.++++..+.+|.++.. +-.+..|++...+.++ ...-.+++-+-.
T Consensus 334 yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nes----rAr~vDsllNFE 409 (790)
T KOG0056|consen 334 YVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNES----RARQVDSLLNFE 409 (790)
T ss_pred HHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhh----hhhhhhhhhcch
Confidence 55555555555555555443 35789999888888887776432 2222333333333333 345678899999
Q ss_pred HHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCccchhHHHHHHHHHHHHH
Q 000674 1086 TIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF-LVLIPRGYVAPGLVGLSLSYAFTLT 1164 (1358)
Q Consensus 1086 tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~-~~l~~~g~is~g~~gl~l~ya~~l~ 1164 (1358)
|+|-|+.|+...++|.+.++.+++..++.......+...-+.+..+.++...++ ++.+..+.++.|...++.+|.+++.
T Consensus 410 TVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy 489 (790)
T KOG0056|consen 410 TVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLY 489 (790)
T ss_pred hhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHh
Confidence 999999999999999999999999988877766666554444444433333333 2344578899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEecCCc
Q 000674 1165 GTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGT 1244 (1358)
Q Consensus 1165 ~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Is~~I~~Ge 1244 (1358)
.|++|+...+..++++.+-+||++++++.++|-. +....|+---.+|.|+|+||+|.|.|+.| ||+||||+++||+
T Consensus 490 ~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVv---d~P~a~pl~~~~G~i~fsnvtF~Y~p~k~-vl~disF~v~pGk 565 (790)
T KOG0056|consen 490 MPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVV---DLPGAPPLKVTQGKIEFSNVTFAYDPGKP-VLSDISFTVQPGK 565 (790)
T ss_pred CchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhh---cCCCCCCccccCCeEEEEEeEEecCCCCc-eeecceEEecCCc
Confidence 9999999999999999999999999998666532 21112222235799999999999998875 9999999999999
Q ss_pred EEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCceecccccccccchhhhcCCCC-CCCHHHHH
Q 000674 1245 RVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIW 1323 (1358)
Q Consensus 1245 kVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~IsiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~ 1323 (1358)
.||+||+||+||||++.+||||||.++|+|+|||+||+++..++||++||+||||.+||++||..||.... .++|||+.
T Consensus 566 tvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~Asneevy 645 (790)
T KOG0056|consen 566 TVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVY 645 (790)
T ss_pred EEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999997433 47999999
Q ss_pred HHHHHcCCchHHhcCCCccccccccCCc
Q 000674 1324 KALEKCQLKTTISSLPNKLDSSEQITYD 1351 (1358)
Q Consensus 1324 ~AL~~a~l~~~I~~Lp~Gldt~v~e~g~ 1351 (1358)
+|++.|++||-|.++|+||+|.|||.|=
T Consensus 646 aAAkAA~IHdrIl~fPegY~t~VGERGL 673 (790)
T KOG0056|consen 646 AAAKAAQIHDRILQFPEGYNTRVGERGL 673 (790)
T ss_pred HHHHHhhHHHHHhcCchhhhhhhhhccc
Confidence 9999999999999999999999999774
No 63
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.2e-48 Score=496.08 Aligned_cols=504 Identities=16% Similarity=0.150 Sum_probs=362.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc-chhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 278 ENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEE-NLQE-GLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMV 355 (1358)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~-~~~~-g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~~ 355 (1358)
.++...++.++.+++....|.+...+++.+.+.+. .... .+.+++++++ .++......|...++..++|..+..
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~----~~~~~~~~~~~~~~~~~~~r~~l~~ 172 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPP----ASFINSAIKYLLKELKLRFRVRLTR 172 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777788888999999999998886543321 1111 1112222222 2333333334466677788888888
Q ss_pred HHHHHHhcCCcc----cCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHH
Q 000674 356 AVYQKQLKLSSL----GRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPG-LVLFLI 429 (1358)
Q Consensus 356 ~iy~K~L~ls~~----~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l~g-l~v~~~ 429 (1358)
.++++.+.-... ..++ .+|++.+.++.|++.+.+... .+..+...++.++.+++.|+..++|....+ ++.+.+
T Consensus 173 ~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l 251 (659)
T TIGR00954 173 YLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFA 251 (659)
T ss_pred HHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 777777653211 1122 579999999999999988544 455666777888888888887677654332 223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWM 509 (1358)
Q Consensus 430 ~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~ 509 (1358)
.+.+...+.+.+.+..++..+..++-....+|.++|+++||.|+-|+...++.++.-++-.+..++.....+....+...
T Consensus 252 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 331 (659)
T TIGR00954 252 TGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNI 331 (659)
T ss_pred HHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34445566777888888888899999999999999999999999999877776554444333333333222222111111
Q ss_pred HH----HHHHHHHHHHHHHhCC----CCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 000674 510 SP----TIISSVIFLGCALTGS----APLNASTIFTV----LATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHE 577 (1358)
Q Consensus 510 ~p----~~v~~~~f~~~~l~~~----~~Lt~~~~Ft~----l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e 577 (1358)
.. ..+..+..+..++... +.+|.+..+.. ..++..+..|+..+...+..+.++.++.+|+.++++.++
T Consensus 332 i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~ 411 (659)
T TIGR00954 332 VAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLD 411 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1111111112123211 46787654332 334667789999999999999999999999999996422
Q ss_pred C-Cc-----cchhc-----------------ccccCCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCC
Q 000674 578 L-NN-----DDVRR-----------------ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGA 634 (1358)
Q Consensus 578 ~-~~-----~~~~~-----------------~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~Gs 634 (1358)
. +. ..... .......+.|+++|++|+|+.+ +++|+|+||++++||+++|+|||||
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~isl~i~~Ge~~~IvG~nGs 489 (659)
T TIGR00954 412 DVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESLSFEVPSGNHLLICGPNGC 489 (659)
T ss_pred HHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--CeeeecceEEECCCCEEEEECCCCC
Confidence 1 00 00000 0011123469999999999743 4699999999999999999999999
Q ss_pred CHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCCCCCCCHHHHHhcCC--------CCCHHHHHHHHHHhccHHHHhc
Q 000674 635 GKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSGSIRDNILYGK--------PMDKARYDKAIKACALDKDINN 704 (1358)
Q Consensus 635 GKStLl~~ilG~~~~~~G~i~~~g--~i~yv~Q~~~~~~~tv~eni~~g~--------~~~~~~~~~~~~~~~l~~dl~~ 704 (1358)
|||||+++|+|+++|++|+|.+++ +++||||+|+++++|++|||.++. ...+++..++++.+++.+.++.
T Consensus 490 GKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 569 (659)
T TIGR00954 490 GKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER 569 (659)
T ss_pred CHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh
Confidence 999999999999999999998864 699999999999999999999874 2345677888999999887777
Q ss_pred CCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc
Q 000674 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE 784 (1358)
Q Consensus 705 l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~ 784 (1358)
|.|.+|..+ .+.+||||||||++||||++++|+++|||||||+||+++.+.+.+.+.. .|+|+|++||+++.++.
T Consensus 570 -~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~~~~ 644 (659)
T TIGR00954 570 -EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSLWKY 644 (659)
T ss_pred -cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHHHHh
Confidence 888888876 5789999999999999999999999999999999999999998775533 38999999999999989
Q ss_pred cCeEEEEeC
Q 000674 785 VDRILVLEG 793 (1358)
Q Consensus 785 ~d~i~~l~~ 793 (1358)
||++++|+.
T Consensus 645 ~d~il~l~~ 653 (659)
T TIGR00954 645 HEYLLYMDG 653 (659)
T ss_pred CCEEEEEeC
Confidence 999999973
No 64
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3e-49 Score=497.20 Aligned_cols=412 Identities=17% Similarity=0.224 Sum_probs=340.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccChhhHHHHHhcCHHHHHhhcHHHHHHHH
Q 000674 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVA 1017 (1358)
Q Consensus 938 l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~D~~~id~~l~~~l~~~~ 1017 (1358)
+++++++.++..++.+++.++....+.+...+++.++++++++.|++||++.++|++++|+++|++.++......+..++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~ 118 (569)
T PRK10789 39 IGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLV 118 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34444445556667777778888889999999999999999999999999999999999999999999877777777777
Q ss_pred HHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHH
Q 000674 1018 ASGTELLAIIGIM-TFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRF 1096 (1358)
Q Consensus 1018 ~~~~~~l~~i~v~-~~~~~~l~~~~l~~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~G~~tIRAf~~e~~f 1096 (1358)
..++..++.++++ ++.+|.+.++.+..++++.++.+.+.+..++..+......+.+.+++.|+++|+++||+|+.++++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~ 198 (569)
T PRK10789 119 DSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQ 198 (569)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHH
Confidence 7666555555555 478898887777666666667777777777666667777888999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 1097 FQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTL-FTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYC 1175 (1358)
Q Consensus 1097 ~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~-~~~~~~~~l~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~ 1175 (1358)
.+++.+..++..+..........+..........+.. ++..+.+.++..|.++.|.+..++.|...+..|+..+...+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~ 278 (569)
T PRK10789 199 SALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFN 278 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998887776666554444443333333222221 222222344568999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCcc
Q 000674 1176 YLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSG 1255 (1358)
Q Consensus 1176 ~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSG 1255 (1358)
.++...++.+|+.++++.++|.+. .....+ +.+|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||
T Consensus 279 ~~~~~~~a~~ri~~ll~~~~~~~~--~~~~~~---~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsG 353 (569)
T PRK10789 279 IVERGSAAYSRIRAMLAEAPVVKD--GSEPVP---EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSG 353 (569)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccC--CCCCCC---CCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCC
Confidence 999999999999999987655321 111111 235789999999999765557999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchH
Q 000674 1256 KTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTT 1334 (1358)
Q Consensus 1256 KSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~IsiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~ 1334 (1358)
||||+++|.|+|+|++|+|.+||+|+++++.+++|+++++|||||++|+||||+||..+. +++|+++++|++.++++++
T Consensus 354 KSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~ 433 (569)
T PRK10789 354 KSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDD 433 (569)
T ss_pred HHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHH
Confidence 999999999999999999999999999999999999999999999999999999997543 5799999999999999999
Q ss_pred HhcCCCccccccccCCcCCCC
Q 000674 1335 ISSLPNKLDSSEQITYDYGWS 1355 (1358)
Q Consensus 1335 I~~Lp~Gldt~v~e~g~~n~s 1355 (1358)
+.++|+||||.++|+|. |-|
T Consensus 434 i~~lp~gl~t~~~~~g~-~LS 453 (569)
T PRK10789 434 ILRLPQGYDTEVGERGV-MLS 453 (569)
T ss_pred HHhCcCcccceecCCCC-cCC
Confidence 99999999999999998 765
No 65
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=8.9e-49 Score=493.56 Aligned_cols=459 Identities=18% Similarity=0.197 Sum_probs=355.5
Q ss_pred HHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 889 FMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIP--KITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKA 966 (1358)
Q Consensus 889 y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~--~~~~~~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~~ 966 (1358)
+++|++..+.. +.+.+++.++...+.++.++.++..++.- ......++.+++++.++..+..++........+.+.
T Consensus 10 l~~~l~~~k~~--~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (585)
T TIGR01192 10 ALSYLNVHKNR--VLLIVIANITLAAITIAEPILFGRIIDAISSKSDVLPTLALWAGFGVFNTIAYVLVAREADRLAHGR 87 (585)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555543322 22233333444445555555555444321 111111222222233333444444555555666667
Q ss_pred HHHHHHHHHHHhhcCCcccccccChhhHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000674 967 SKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMV 1046 (1358)
Q Consensus 967 s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~i~v~~~~~~~l~~~~l~~~~ 1046 (1358)
..+++++++++++++|++||+++++|++++|+++|++.+...+...+..++..++.+++.+++++..+|.++++++.+++
T Consensus 88 ~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~ 167 (585)
T TIGR01192 88 RATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGI 167 (585)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777899999999999999999999999999999999998888777777777777777888888999999988887778
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 000674 1047 AVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVE 1126 (1358)
Q Consensus 1047 ~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~G~~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~ 1126 (1358)
++.++.+.+.+..++..+......+...+++.|+++|+++||+|+.++.+.+++.+..++..+..+.......+......
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (585)
T TIGR01192 168 LYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNR 247 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888889999999999999999999999999999988888766665554443333333333
Q ss_pred HHHHHHHHH-HHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCC
Q 000674 1127 ALQNLTLFT-AALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKR 1205 (1358)
Q Consensus 1127 ~l~~~~~~~-~~~~~~l~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~ 1205 (1358)
++..+..++ ..+.+.++..|.++.|.+.+++.|+..+..++..+...+.++.....+.+|+.++.+.+++... ...
T Consensus 248 ~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~---~~~ 324 (585)
T TIGR01192 248 MASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREE---PAD 324 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---Ccc
Confidence 333322222 2223344568999999999999999999999999999999999999999999999876554321 111
Q ss_pred CCCCC-CCcceEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCC
Q 000674 1206 PPSSW-PFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM 1284 (1358)
Q Consensus 1206 ~~~~w-p~~G~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i 1284 (1358)
++ .+ +..|.|+|+||+|+|+++ .++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.+||+|++++
T Consensus 325 ~~-~~~~~~~~i~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~ 402 (585)
T TIGR01192 325 AP-ELPNVKGAVEFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTV 402 (585)
T ss_pred CC-CCCCCCCeEEEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhC
Confidence 11 12 235789999999999754 3599999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHhhcCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCccccccccCCcCCCC
Q 000674 1285 GLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSEQITYDYGWS 1355 (1358)
Q Consensus 1285 ~l~~LRs~IsiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~Gldt~v~e~g~~n~s 1355 (1358)
+.+++|+++++|||||.+|+||||+||.... +++|+|+++|++.+++++++.++|+|+||.++|+|. +.|
T Consensus 403 ~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~-~LS 473 (585)
T TIGR01192 403 TRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGN-RLS 473 (585)
T ss_pred CHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCC-CCC
Confidence 9999999999999999999999999997543 578999999999999999999999999999999988 766
No 66
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-48 Score=450.44 Aligned_cols=407 Identities=20% Similarity=0.247 Sum_probs=340.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccChhhHHHHHhcCHHHHHhhcHHHHHHHHHHHHH
Q 000674 943 GVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTE 1022 (1358)
Q Consensus 943 ~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~D~~~id~~l~~~l~~~~~~~~~ 1022 (1358)
++++...+..|+..+..+....++-.++|.++|+++...+..-......|+++||+..|++.+|...=..+...+..++.
T Consensus 66 ~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~ 145 (573)
T COG4987 66 GLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVL 145 (573)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHH
Confidence 44566777788888889999999999999999999999999999999999999999999999999988888888877777
Q ss_pred HHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHH
Q 000674 1023 LLAIIGIMTFVTWQVLVVA-IFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYL 1101 (1358)
Q Consensus 1023 ~l~~i~v~~~~~~~l~~~~-l~~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~G~~tIRAf~~e~~f~~~~~ 1101 (1358)
.+++++.+.+++|++++.+ +.++++...+...+.+..|...+.-...+..+.+++.|-+.|....+.||+++++.+.+.
T Consensus 146 ~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~ 225 (573)
T COG4987 146 IAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALE 225 (573)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHH
Confidence 7777777778888876544 344444455666677778888888888899999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 000674 1102 KLVDIDASLFFHTNGVMEWLILRVEALQNLTLF-TAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLS-RWYCYLAN 1179 (1358)
Q Consensus 1102 ~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~-~~~~~~~l~~~g~is~g~~gl~l~ya~~l~~~l~~l~-~~~~~le~ 1179 (1358)
+.-+...+...+......|-...+.++..+.+. ..++.+.....|..+.-.+.+++..++....++.-+. ..+.++.+
T Consensus 226 ~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq 305 (573)
T COG4987 226 ATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQ 305 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhH
Confidence 999999999999999999998888877766555 3333333344566553333333333344555555555 55678899
Q ss_pred HhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcc-eEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHH
Q 000674 1180 YIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKG-RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTT 1258 (1358)
Q Consensus 1180 ~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G-~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKST 1258 (1358)
...|.+|+.+..+.++|.... +.. -|..| .++++||+|+|+++.++||+|+||++++||||||+|||||||||
T Consensus 306 ~~~Sa~Rl~~i~~q~~e~~~~--~~~----~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKST 379 (573)
T COG4987 306 VIASARRLNDILDQKPEVTFP--DEQ----TATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKST 379 (573)
T ss_pred HHHHHHHHhhhccCCcccCCC--ccc----cCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHH
Confidence 999999999988877765432 111 12222 79999999999888888999999999999999999999999999
Q ss_pred HHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhc
Q 000674 1259 LISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISS 1337 (1358)
Q Consensus 1259 L~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~IsiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~ 1337 (1358)
++++|.|-|+|++|+|..+|+|++.++-+++|..|++++|.++||+||+|+||.-.+ ++||||+|+||++++|++++++
T Consensus 380 llqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~ 459 (573)
T COG4987 380 LLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLES 459 (573)
T ss_pred HHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999995322 4899999999999999999999
Q ss_pred CCCccccccccCCcCCCCC
Q 000674 1338 LPNKLDSSEQITYDYGWSS 1356 (1358)
Q Consensus 1338 Lp~Gldt~v~e~g~~n~s~ 1356 (1358)
.|+||||.+||+|. +.|=
T Consensus 460 ~p~gl~t~lge~G~-~LSG 477 (573)
T COG4987 460 APDGLNTWLGEGGR-RLSG 477 (573)
T ss_pred ChhhhhchhccCCC-cCCc
Confidence 99999999999999 8774
No 67
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.2e-47 Score=491.85 Aligned_cols=464 Identities=19% Similarity=0.255 Sum_probs=339.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000674 344 RSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALP 422 (1358)
Q Consensus 344 ~~~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~-~~~~w~~plqi~~~~~~L~~~lG~~~l~ 422 (1358)
..|++.-..|-..++++.++-...-.+...+|+|+|..|.|++.+++.+.. +.......++++..+++.-...-+..++
T Consensus 884 ~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~ 963 (1381)
T KOG0054|consen 884 KGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIA 963 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHH
Confidence 344444445555555555554444445678999999999999999875543 4444444444444443333322233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 423 GLVLFLICGLLNVPFAKILQKCQSEFM----IAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQL 498 (1358)
Q Consensus 423 gl~v~~~~~~l~~~~~~~~~~~q~~~m----~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~ 498 (1358)
.+++.+++.. +.+.+.+..++.. ..+.-=.+-.+|.|+|+-+|+.|+.|+.|.++-...-+.-.+.. .+
T Consensus 964 ~~pl~v~~~~----~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~---f~ 1036 (1381)
T KOG0054|consen 964 IIPLGVIYYF----VQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAF---FL 1036 (1381)
T ss_pred HHHHHHHHHH----HHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHH---HH
Confidence 3333333332 3333333333322 22344456789999999999999999999887665444432211 11
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000674 499 RKAYGTVI----YWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLL 574 (1358)
Q Consensus 499 ~~~~~~~~----~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~ 574 (1358)
..+.+-.+ -..+..++..+++.. ++..++..+++.|=-+++.--.+..-++.+-.....+-.-.+|.+|+.+|.+
T Consensus 1037 ~~~a~RWla~Rle~ig~~~v~~~al~~-vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~ 1115 (1381)
T KOG0054|consen 1037 SISANRWLAVRLELLGNLVVLIAALFA-VLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTD 1115 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhc
Confidence 11111111 011122222222222 1222223678877777776666666666666666666667899999999998
Q ss_pred ccCCCccchhcc-cc--cCCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCC
Q 000674 575 DHELNNDDVRRI-SL--QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS 651 (1358)
Q Consensus 575 ~~e~~~~~~~~~-~~--~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~ 651 (1358)
.++..+...+.. ++ -+.++.|+|+|.+..|.++. .++|+||||+|++||.+||||++|||||||.++|.++.+|.+
T Consensus 1116 ~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~l-p~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~ 1194 (1381)
T KOG0054|consen 1116 IPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNL-PLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAE 1194 (1381)
T ss_pred CCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCC-cchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccC
Confidence 433222222111 22 24678999999999999874 589999999999999999999999999999999999999999
Q ss_pred cEEEEcC-------------eEEEEeCCCCCCCCCHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCC
Q 000674 652 GTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718 (1358)
Q Consensus 652 G~i~~~g-------------~i~yv~Q~~~~~~~tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~ 718 (1358)
|+|.+|| +++.+||+|.+|+||+|.|+.--.++.+++..+++|.|.|++-++.+|+|-+++|.|+|.
T Consensus 1195 G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~ 1274 (1381)
T KOG0054|consen 1195 GEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGE 1274 (1381)
T ss_pred CeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCc
Confidence 9999998 599999999999999999999777888999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEE
Q 000674 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQ 798 (1358)
Q Consensus 719 ~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~ 798 (1358)
|+|-||||-++||||+.++++|++|||+|+++|++|-..| ++.++...+++|||.+.|+++.+.++|||+|||+|+|+|
T Consensus 1275 N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lI-Q~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~E 1353 (1381)
T KOG0054|consen 1275 NFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALI-QKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVE 1353 (1381)
T ss_pred cCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHH-HHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEee
Confidence 9999999999999999999999999999999999997754 667788889999999999999999999999999999999
Q ss_pred ecChHHHHhcCc-hHHHHHH
Q 000674 799 SGNYQELLLAGT-AFEQLVN 817 (1358)
Q Consensus 799 ~g~~~~l~~~~~-~~~~~~~ 817 (1358)
.|+|++|+++++ .|.+++.
T Consensus 1354 fdsP~~Ll~~~~S~f~~~l~ 1373 (1381)
T KOG0054|consen 1354 FDSPAELLSDKDSLFSSLLK 1373 (1381)
T ss_pred cCChHHHHhCCcchHHHHHH
Confidence 999999998754 4544443
No 68
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-48 Score=435.99 Aligned_cols=411 Identities=23% Similarity=0.314 Sum_probs=317.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHH
Q 000674 400 SLALQLFLAIGVLFGVVGLGALPGLVLFLICG-LLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKF 478 (1358)
Q Consensus 400 ~~plqi~~~~~~L~~~lG~~~l~gl~v~~~~~-~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f 478 (1358)
...+++.+..+++|+..||...+..++.+++. .+.......-..++++..++..+.-...-+.|-+-.++|.|+=|+.+
T Consensus 65 P~~~Ei~l~~vi~~~~~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e 144 (497)
T COG5265 65 PTLVEISLVAVILWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYE 144 (497)
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhh
Confidence 34578999999999888876544433333332 22222223333344444444444445678899999999999999877
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 479 KSLIESRREK----EFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPE 554 (1358)
Q Consensus 479 ~~~i~~~R~~----El~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~ 554 (1358)
.++-.+..+. +++..-....+......++...- ....+-.... +..+.+|.+.....-++...+..|++.+..
T Consensus 145 ~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~~I~~~~l--~~~m~~s~~~-v~~g~~TvgD~V~~Nall~qls~Plnflg~ 221 (497)
T COG5265 145 AVRYDHALETYEKAAIKVHVSLLVLNFGQTAIFSTGL--RVMMTMSALG-VEEGQLTVGDLVNVNALLFQLSIPLNFLGF 221 (497)
T ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--HHHHhhcHHH-HhhccCCchhHHhHHHHHhhhhhhhhhhHH
Confidence 6665444433 33322111122222112211111 1111111111 234789999988888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCccchhccccc-CCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCC
Q 000674 555 ALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQ-KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVG 633 (1358)
Q Consensus 555 ~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~~~-~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~G 633 (1358)
....+-|+++..++..+.+..+-...+..+-.+.. ...+.|.|+|++|.|+++ +++|+++||++++|+.++|+|++|
T Consensus 222 ~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~--r~iL~~isf~i~~g~tvAiVg~SG 299 (497)
T COG5265 222 SYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPR--RPILNGISFTIPLGKTVAIVGESG 299 (497)
T ss_pred HHHHHHHhhhhHHHHHHhhccchhhccCCCCccccccccceEEEEEEEeecccc--chhhcCccccccCccEEEEEeCCC
Confidence 99999999999999988775432111111111111 345679999999999874 689999999999999999999999
Q ss_pred CCHHHHHHHHhCCccCCCcEEEEcCe-------------EEEEeCCCCCCCCCHHHHHhcCCCC-CHHHHHHHHHHhccH
Q 000674 634 AGKSSLLYAILGEIPKISGTVNLYGS-------------IAYVSQTSWIQSGSIRDNILYGKPM-DKARYDKAIKACALD 699 (1358)
Q Consensus 634 sGKStLl~~ilG~~~~~~G~i~~~g~-------------i~yv~Q~~~~~~~tv~eni~~g~~~-~~~~~~~~~~~~~l~ 699 (1358)
+||||+++.+.+++++++|.|.++|+ ||.|||+..+||.|+..||.+|++. .++....+.++.++.
T Consensus 300 ~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~ 379 (497)
T COG5265 300 AGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIH 379 (497)
T ss_pred CcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhh
Confidence 99999999999999999999999984 9999999999999999999999874 566778899999999
Q ss_pred HHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCc
Q 000674 700 KDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV 779 (1358)
Q Consensus 700 ~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~ 779 (1358)
+.++.+|+|.+|.+||+|-.|||||||||++||++..+|+|++|||.|||||.|+++.|-. .++...+|+|.+++.|++
T Consensus 380 ~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~-~l~~~~~~rttlviahrl 458 (497)
T COG5265 380 DFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQA-ALREVSAGRTTLVIAHRL 458 (497)
T ss_pred HHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHH-HHHHHhCCCeEEEEeehh
Confidence 9999999999999999999999999999999999999999999999999999999999854 445667899999999999
Q ss_pred chhhccCeEEEEeCCeEEEecChHHHHhcCchHHHHH
Q 000674 780 EFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLV 816 (1358)
Q Consensus 780 ~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 816 (1358)
+.+-.||.|+||++|+|+|.|+++|++..++.|++++
T Consensus 459 sti~~adeiivl~~g~i~erg~h~~ll~~~g~ya~mw 495 (497)
T COG5265 459 STIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEMW 495 (497)
T ss_pred hhccCCceEEEeeCCEEEecCcHHHHHHcCChHHHHh
Confidence 9999999999999999999999999999999888765
No 69
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=2.9e-47 Score=477.39 Aligned_cols=429 Identities=15% Similarity=0.123 Sum_probs=327.7
Q ss_pred HHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCh
Q 000674 912 FVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPV 991 (1358)
Q Consensus 912 ~~~~~~~~~~wl~~~~~~~~~~~~~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~ 991 (1358)
.....+..++.+..+.+.........+..++++.++..++.++..++....+.+...++|.++++++++.|++||++.++
T Consensus 30 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~ 109 (555)
T TIGR01194 30 GGLAIIALLASINNAIHEENFLGQGSLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGA 109 (555)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcCc
Confidence 33344455555555544211111112223444555667778888889999999999999999999999999999999999
Q ss_pred hhHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 000674 992 GRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKA 1071 (1358)
Q Consensus 992 G~IlnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~i~v~~~~~~~l~~~~l~~~~~~~~~~~~y~~~sr~l~rl~~~~~s 1071 (1358)
|++++|+++|++.++..+.. +..++..++.+++.++++++.+|.++++++.++++..++..+..+..++..+......+
T Consensus 110 G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (555)
T TIGR01194 110 HNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEED 188 (555)
T ss_pred chhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999988754 66677777778888888999999998887766666555555555555566666666778
Q ss_pred hHHHHHHHHhcchHHHHhcccHH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 000674 1072 PVMNYTAETSQGVVTIRAFNMVD--RFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVA 1149 (1358)
Q Consensus 1072 pl~s~~~Etl~G~~tIRAf~~e~--~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~l~~~g~is 1149 (1358)
.+.+++.|.+.|+++||+|+.++ ...+++.+..++..+................+++..+...+.. ......|.++
T Consensus 189 ~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~t 266 (555)
T TIGR01194 189 AFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCAL--FAAAMFASID 266 (555)
T ss_pred HHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcCCC
Confidence 89999999999999999999954 4566666666665555443322222222222222111111111 1111236889
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCc--CCCC-C--CCCCCCcceEEEEEEEEE
Q 000674 1150 PGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIV--EDKR-P--PSSWPFKGRIELRQLKIR 1224 (1358)
Q Consensus 1150 ~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~--~~~~-~--~~~wp~~G~I~f~nVsf~ 1224 (1358)
.|.+..++.|+..+..|+..+...+.+++...+|.+|+.++++.+.+++... ++.. . .+.....+.|+|+||+|+
T Consensus 267 ~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~ 346 (555)
T TIGR01194 267 AAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMN 346 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEE
Confidence 9999999999999999999999999999999999999999976432221110 0000 0 011123478999999999
Q ss_pred eCCC---CCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCceeccccc
Q 000674 1225 YRPN---APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPT 1301 (1358)
Q Consensus 1225 Y~~~---~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~IsiVpQdp~ 1301 (1358)
|++. .+++|+|+||+|++||++||||+||||||||+++|.|+|+|++|+|.+||+|+++++.+++|+++++|||||+
T Consensus 347 y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~ 426 (555)
T TIGR01194 347 PKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFH 426 (555)
T ss_pred eCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChh
Confidence 9643 2369999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCccccc
Q 000674 1302 LFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSS 1345 (1358)
Q Consensus 1302 LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~Gldt~ 1345 (1358)
+|++|+|+|+.| +.+|++++++++.++++++++++|+||||.
T Consensus 427 lf~~ti~~n~~~--~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~ 468 (555)
T TIGR01194 427 LFDDLIGPDEGE--HASLDNAQQYLQRLEIADKVKIEDGGFSTT 468 (555)
T ss_pred hhhhhhhccccc--chhHHHHHHHHHHcCCchhhcccccccCCc
Confidence 999999999854 468999999999999999999999999996
No 70
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-47 Score=445.80 Aligned_cols=416 Identities=18% Similarity=0.195 Sum_probs=353.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccChhhHHHHHhcCHHHHHhhcHHHHHH
Q 000674 936 ILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVF 1015 (1358)
Q Consensus 936 ~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~D~~~id~~l~~~l~~ 1015 (1358)
.+++..++..++..+..+.+.....+.+.++...+|.++++++.+.+..|-...|+|+....++.-++.++..+...++.
T Consensus 41 ~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq 120 (559)
T COG4988 41 PLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQ 120 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666667778888888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHH
Q 000674 1016 VAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDR 1095 (1358)
Q Consensus 1016 ~~~~~~~~l~~i~v~~~~~~~l~~~~l~~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~G~~tIRAf~~e~~ 1095 (1358)
++.+.+..+..++.+++.+|...++.+..+++...........++...+..-.+...+.+||-+.++|+.|+|+|++.+.
T Consensus 121 ~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~ 200 (559)
T COG4988 121 MFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEA 200 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHH
Confidence 99999999999999999999987766544444444444445556666666777788899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcC-CccchhHHHHHHHHHHHHHHHHHHHHHH
Q 000674 1096 FFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLV-LIPR-GYVAPGLVGLSLSYAFTLTGTQVFLSRW 1173 (1358)
Q Consensus 1096 f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~-l~~~-g~is~g~~gl~l~ya~~l~~~l~~l~~~ 1173 (1358)
..++..+.-.+..+......+..---+..+|++..+.+..+++.+. .+.. |.++....-+++..+.-+..|+..+...
T Consensus 201 ~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~ 280 (559)
T COG4988 201 TEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSF 280 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9888888887777777666666555567788888887776666533 2344 7888888888899999999999999999
Q ss_pred HHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCC
Q 000674 1174 YCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTG 1253 (1358)
Q Consensus 1174 ~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTG 1253 (1358)
|..-.++..+.|.+..+++.|.+.+... ......|-.+.+|+.+|++++|+++. ++++|+||+++|||++||||+||
T Consensus 281 fH~~~~g~aa~d~i~~~l~~~~~~~~~~--~~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talvG~SG 357 (559)
T COG4988 281 FHAAAAGEAAADKLFTLLESPVATPGSG--EKAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALVGASG 357 (559)
T ss_pred HHHHhhhhhHHHHHHHHhcCCCCCCCCc--cccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEEEEECCCC
Confidence 9999999999999999998776644211 11123333345677779999997665 79999999999999999999999
Q ss_pred ccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCc
Q 000674 1254 SGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLK 1332 (1358)
Q Consensus 1254 SGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~IsiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~ 1332 (1358)
||||||+++|.|+.+|++|+|.+||+|+++++.+++|+++++|||+|++|+|||||||.-++ +.|||||++|++++++.
T Consensus 358 aGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~ 437 (559)
T COG4988 358 AGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLL 437 (559)
T ss_pred CCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHH
Confidence 99999999999999999999999999999999999999999999999999999999996444 37999999999999999
Q ss_pred hHHhcCCCccccccccCCcCCCCC
Q 000674 1333 TTISSLPNKLDSSEQITYDYGWSS 1356 (1358)
Q Consensus 1333 ~~I~~Lp~Gldt~v~e~g~~n~s~ 1356 (1358)
||++. |+||||++||+|. |=|.
T Consensus 438 ~~v~~-p~GLdt~ige~G~-~LSg 459 (559)
T COG4988 438 EFVPK-PDGLDTVIGEGGA-GLSG 459 (559)
T ss_pred HhhcC-CCcccchhccCCC-CCCH
Confidence 99999 9999999999999 8764
No 71
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=5.7e-47 Score=474.83 Aligned_cols=405 Identities=15% Similarity=0.141 Sum_probs=328.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccChhhHHHHHhcCHHHHHhhcHH-HHHHH
Q 000674 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPF-SIVFV 1016 (1358)
Q Consensus 938 l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~D~~~id~~l~~-~l~~~ 1016 (1358)
+.+++++.++..++.+++.++....+.+....++.++++++++.|+. ..|..++++++|++.+...+.. .+..+
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~ 123 (544)
T TIGR01842 49 TVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAF 123 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34444555666777888889999999999999999999999999984 2367789999999999987766 45555
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHH
Q 000674 1017 AASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRF 1096 (1358)
Q Consensus 1017 ~~~~~~~l~~i~v~~~~~~~l~~~~l~~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~G~~tIRAf~~e~~f 1096 (1358)
+..++.++. ++++++.+|++.++++..++++.++..++.+..++..+...+..+...+++.|+++|+++||+|+.++.+
T Consensus 124 ~~~~~~~~~-~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~ 202 (544)
T TIGR01842 124 FDAPWMPIY-LLVCFLLHPWIGILALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNL 202 (544)
T ss_pred HHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHH
Confidence 555554443 4567888998877666555555555555555555566666677788899999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 1097 FQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTL-FTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYC 1175 (1358)
Q Consensus 1097 ~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~-~~~~~~~~l~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~ 1175 (1358)
.+++.+..++..+.................++..+.. ++.++.+.++..|.+++|.+.+++.|...+..++..+...+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~ 282 (544)
T TIGR01842 203 TKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWK 282 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998887766665544444333333333333222 222233445568999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCcc
Q 000674 1176 YLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSG 1255 (1358)
Q Consensus 1176 ~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSG 1255 (1358)
+++....+.+|+.++++.++|.+. ....+ +..+.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||
T Consensus 283 ~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~---~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsG 356 (544)
T TIGR01842 283 QFSGARQAYKRLNELLANYPSRDP---AMPLP---EPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSG 356 (544)
T ss_pred HHHHHHHHHHHHHHHHhCCccccC---CCCCC---CCCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCC
Confidence 999999999999999987665321 11111 235789999999999765557999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchH
Q 000674 1256 KTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTT 1334 (1358)
Q Consensus 1256 KSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~IsiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~ 1334 (1358)
||||+++|.|+++|++|+|.+||+|+++++.+.+|+++++|||||++|+||+|+||..++ +++|+|+++|++.++++++
T Consensus 357 KSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~ 436 (544)
T TIGR01842 357 KSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHEL 436 (544)
T ss_pred HHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHH
Confidence 999999999999999999999999999999999999999999999999999999997554 4899999999999999999
Q ss_pred HhcCCCccccccccCCcCCCC
Q 000674 1335 ISSLPNKLDSSEQITYDYGWS 1355 (1358)
Q Consensus 1335 I~~Lp~Gldt~v~e~g~~n~s 1355 (1358)
++++|+||||.++|+|. |.|
T Consensus 437 i~~l~~gl~t~~~~~g~-~LS 456 (544)
T TIGR01842 437 ILRLPDGYDTVIGPGGA-TLS 456 (544)
T ss_pred HHhCccccccccCCCcC-CCC
Confidence 99999999999999998 776
No 72
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-46 Score=434.19 Aligned_cols=409 Identities=20% Similarity=0.280 Sum_probs=316.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccChhhHHHHHhcCHHHHHhhcHHHHHH
Q 000674 936 ILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVF 1015 (1358)
Q Consensus 936 ~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~D~~~id~~l~~~l~~ 1015 (1358)
..+..|.+..+.+.+|..++.+.+.....++.+....+.+.+.+.+.++||.+..+|.+.+++.+-...|...+...+..
T Consensus 75 ~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~ 154 (591)
T KOG0057|consen 75 ALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFN 154 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHH
Confidence 45677888889999999999999999999999999999999999999999999999999988888888888877777777
Q ss_pred HHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHH
Q 000674 1016 VAASGTELLAIIGIMTF-VTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVD 1094 (1358)
Q Consensus 1016 ~~~~~~~~l~~i~v~~~-~~~~l~~~~l~~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~G~~tIRAf~~e~ 1094 (1358)
++..++.+......+.+ ..+.+.++++..+..|..+.....+.--+.++....+.....+..-|++.+-.+||+||.|+
T Consensus 155 i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~ 234 (591)
T KOG0057|consen 155 IIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEE 234 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHH
Confidence 66666655555444332 44555554444444443221111111112233334455566778889999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 000674 1095 RFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF-LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRW 1173 (1358)
Q Consensus 1095 ~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~-~~l~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~ 1173 (1358)
+..++|+..+.++.+...........+.+.-..+.++....+..+ +--+..+.++.|.+.+..+...++..+++.+...
T Consensus 235 ~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~v 314 (591)
T KOG0057|consen 235 YEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSV 314 (591)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHH
Confidence 999999999988877766555444443333333322211111111 1123457889999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCC
Q 000674 1174 YCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTG 1253 (1358)
Q Consensus 1174 ~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTG 1253 (1358)
+.++-+++.-++-.+...+.... . .+. +++.-+..|.|+|+||+|.|.|+. +||||+||+|++||||||||++|
T Consensus 315 yr~~~q~l~Dm~~~~~l~~~~~~---i-~~~-~~~i~~~~~~I~F~dV~f~y~~k~-~iL~gvsf~I~kGekVaIvG~nG 388 (591)
T KOG0057|consen 315 YRELRQALTDMRTLFILLEVDED---I-QEA-ALPIELFGGSIEFDDVHFSYGPKR-KVLKGVSFTIPKGEKVAIVGSNG 388 (591)
T ss_pred HHHHHHHHHhHHHHHhhhhhhhh---h-hhc-cCCcccCCCcEEEEeeEEEeCCCC-ceecceeEEecCCCEEEEECCCC
Confidence 99998888776665543221111 1 111 111123457899999999998764 59999999999999999999999
Q ss_pred ccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCc
Q 000674 1254 SGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLK 1332 (1358)
Q Consensus 1254 SGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~IsiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~ 1332 (1358)
|||||++++|+||+| .+|+|+|||+||++++++.+|+.||+||||..||++||-+||...+ ..+|||+.++||++++|
T Consensus 389 sGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~h 467 (591)
T KOG0057|consen 389 SGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLH 467 (591)
T ss_pred CCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcH
Confidence 999999999999999 9999999999999999999999999999999999999999997554 47999999999999999
Q ss_pred hHHhcCCCccccccccCCc
Q 000674 1333 TTISSLPNKLDSSEQITYD 1351 (1358)
Q Consensus 1333 ~~I~~Lp~Gldt~v~e~g~ 1351 (1358)
|.|+++|+||+|.|||.|-
T Consensus 468 d~i~~l~~GY~T~VGerG~ 486 (591)
T KOG0057|consen 468 DVISRLPDGYQTLVGERGL 486 (591)
T ss_pred HHHHhccccchhhHhhccc
Confidence 9999999999999999885
No 73
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=3.2e-46 Score=504.32 Aligned_cols=190 Identities=21% Similarity=0.272 Sum_probs=154.8
Q ss_pred CccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCc----cCCCcEEEEcC------------eEEEEeCCCCC-CCC
Q 000674 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI----PKISGTVNLYG------------SIAYVSQTSWI-QSG 672 (1358)
Q Consensus 610 ~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~----~~~~G~i~~~g------------~i~yv~Q~~~~-~~~ 672 (1358)
+++|+|+|+++++||+++|+|||||||||||++|+|.. +|.+|+|.++| .++|++|++.+ .+.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence 46899999999999999999999999999999999996 46899999987 28999998754 567
Q ss_pred CHHHHHhcCCC----------CCHHHHH-----HHHHHhccHHHHhcCCCCCCccccC-CCCCCChHHHHHHHHHHHHhc
Q 000674 673 SIRDNILYGKP----------MDKARYD-----KAIKACALDKDINNFDHGDLTEIGQ-RGLNLSGGQKQRIQLARAVYN 736 (1358)
Q Consensus 673 tv~eni~~g~~----------~~~~~~~-----~~~~~~~l~~dl~~l~~gd~t~ig~-~g~~LSGGQkqRv~LARal~~ 736 (1358)
||+||+.|+.. ..++.+. .+++..+|.+ --+|.+|+ ....|||||||||+||||++.
T Consensus 154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-------~~~t~vg~~~~~~LSGGerkRvsIA~aL~~ 226 (1394)
T TIGR00956 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSH-------TRNTKVGNDFVRGVSGGERKRVSIAEASLG 226 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCccc-------ccCceeCCCcCCCCCcccchHHHHHHHHHh
Confidence 99999988521 2222221 2333333322 22455654 467899999999999999999
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCc-chhh-ccCeEEEEeCCeEEEecChHHHH
Q 000674 737 DADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQV-EFLS-EVDRILVLEGGQITQSGNYQELL 806 (1358)
Q Consensus 737 ~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~-~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 806 (1358)
+|++++|||||+|||+.++..+.+.+..... .|+|+|+++|++ +.+. .+|+|++|++|++++.|+.+++.
T Consensus 227 ~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 227 GAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 9999999999999999999999887665544 489999999997 4554 58999999999999999998874
No 74
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-47 Score=480.29 Aligned_cols=206 Identities=20% Similarity=0.359 Sum_probs=168.0
Q ss_pred CcEEEEeeEEEeCCCC-CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000674 593 RSVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------------- 658 (1358)
..++++|++++|+... ..++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 3689999999996422 34799999999999999999999999999999999999999999987643
Q ss_pred --------------eEEEEeCCC--CC-CCCCHHHHHhcCC----CCCH----HHHHHHHHHhccHHHHhcCCCCCCccc
Q 000674 659 --------------SIAYVSQTS--WI-QSGSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEI 713 (1358)
Q Consensus 659 --------------~i~yv~Q~~--~~-~~~tv~eni~~g~----~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~i 713 (1358)
+||||+|+| .+ ...||.||+.++. ..+. ++..++++..++... ....
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~ 162 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTIL 162 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHH
Confidence 489999998 34 4579999998752 1222 233344444444210 0123
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcC-CcEEEEEcCCcchhhc-cCeEEEE
Q 000674 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVL 791 (1358)
Q Consensus 714 g~~g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l 791 (1358)
..+..+|||||||||+||||++.+|++|||||||++||+.+.+.+.+.+.....+ |+|+|+||||++.+.. ||+|++|
T Consensus 163 ~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl 242 (623)
T PRK10261 163 SRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVM 242 (623)
T ss_pred hCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEe
Confidence 3677899999999999999999999999999999999999999988766554433 8999999999999865 8999999
Q ss_pred eCCeEEEecChHHHH
Q 000674 792 EGGQITQSGNYQELL 806 (1358)
Q Consensus 792 ~~G~i~~~g~~~~l~ 806 (1358)
++|++++.|+++++.
T Consensus 243 ~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 243 YQGEAVETGSVEQIF 257 (623)
T ss_pred eCCeecccCCHHHhh
Confidence 999999999887764
No 75
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-47 Score=473.47 Aligned_cols=196 Identities=23% Similarity=0.338 Sum_probs=163.0
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------~ 659 (1358)
.++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 4899999999963 4699999999999999999999999999999999999999999999876 3
Q ss_pred EEEEeCCCCCC-CCCHHHHHhcCCC-----C-----CH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHH
Q 000674 660 IAYVSQTSWIQ-SGSIRDNILYGKP-----M-----DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1358)
Q Consensus 660 i~yv~Q~~~~~-~~tv~eni~~g~~-----~-----~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 724 (1358)
++|++|++.++ +.|++||+.++.. . +. ++..+.++.+++.. ....+..+|||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgG~ 150 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV-----------DLDEKVANLSISH 150 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCC-----------CcccchhhCCHHH
Confidence 89999998664 5699999987631 0 11 12223333333321 1235678999999
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChH
Q 000674 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1358)
Q Consensus 725 kqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1358)
||||+||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++++.. ||++++|++|++++.|+++
T Consensus 151 ~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (510)
T PRK09700 151 KQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVS 230 (510)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchh
Confidence 999999999999999999999999999999999988766655568999999999999875 8999999999998776543
No 76
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.6e-47 Score=468.35 Aligned_cols=194 Identities=23% Similarity=0.371 Sum_probs=161.3
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC--CCcEEEEcC-------------
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK--ISGTVNLYG------------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~--~~G~i~~~g------------- 658 (1358)
.++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 5899999999963 4699999999999999999999999999999999999996 899999876
Q ss_pred -eEEEEeCCCCCC-CCCHHHHHhcCCCC------CHH----HHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHH
Q 000674 659 -SIAYVSQTSWIQ-SGSIRDNILYGKPM------DKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1358)
Q Consensus 659 -~i~yv~Q~~~~~-~~tv~eni~~g~~~------~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 726 (1358)
.++|++|++.++ +.|++||+.++... +.+ +.+++++..++. + ....+..+|||||||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---------~--~~~~~~~~LSgGqkq 150 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLD---------I--NPATPVGNLGLGQQQ 150 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCC---------C--CcccchhhCCHHHHH
Confidence 289999998664 56999999986421 221 222233333221 1 123567899999999
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecC
Q 000674 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1358)
Q Consensus 727 Rv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1358)
|++||||++.+|+++||||||++||+...+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 151 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 226 (506)
T PRK13549 151 LVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRP 226 (506)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecc
Confidence 9999999999999999999999999999999988766555568999999999999876 89999999999987653
No 77
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=8.5e-47 Score=471.32 Aligned_cols=204 Identities=20% Similarity=0.353 Sum_probs=164.7
Q ss_pred cEEEEeeEEEeCCC-CCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC---------
Q 000674 594 SVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~-~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~-----~~G~i~~~g--------- 658 (1358)
-++++|++++|+.. ...++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999642 124799999999999999999999999999999999999986 799998765
Q ss_pred --------eEEEEeCCCC--C-CCCCHHHHHhcCC----CCC----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCC
Q 000674 659 --------SIAYVSQTSW--I-QSGSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1358)
Q Consensus 659 --------~i~yv~Q~~~--~-~~~tv~eni~~g~----~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~ 719 (1358)
+++|++|++. + ...|++||+.++. ..+ .++..++++.+++..... ....+..+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--------~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAK--------RLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHhhCCcc
Confidence 3899999984 3 3469999986421 122 133445555555532100 12356789
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEE
Q 000674 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1358)
Q Consensus 720 LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1358)
|||||||||+||||++.+|+++||||||++||+...+++.+.+.+... .|+|+|+|||+++.+.. ||+|++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999876655444 38999999999999875 8999999999999
Q ss_pred EecChHHH
Q 000674 798 QSGNYQEL 805 (1358)
Q Consensus 798 ~~g~~~~l 805 (1358)
+.|+++++
T Consensus 237 ~~g~~~~~ 244 (529)
T PRK15134 237 EQNRAATL 244 (529)
T ss_pred EeCCHHHH
Confidence 88876654
No 78
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.4e-46 Score=441.65 Aligned_cols=206 Identities=25% Similarity=0.386 Sum_probs=168.8
Q ss_pred cEEEEeeEEEeCCCCC-CccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCC----CcEEEEcC----------
Q 000674 594 SVKIQEGNFSWDPELA-IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI----SGTVNLYG---------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~-~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~----~G~i~~~g---------- 658 (1358)
-++++|.+..|..... .++++||||++.+||.+||+|.+||||||+.++|+|..++. +|+|.++|
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5889999999876532 25999999999999999999999999999999999999987 89998877
Q ss_pred -------eEEEEeCCCC-CCC--CCHHHHHhc----CCCC-CH---HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCC
Q 000674 659 -------SIAYVSQTSW-IQS--GSIRDNILY----GKPM-DK---ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1358)
Q Consensus 659 -------~i~yv~Q~~~-~~~--~tv~eni~~----g~~~-~~---~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~L 720 (1358)
.|||++|+|+ .+| .||.+-|.- .... .+ ++..+.++..++.+.... +..+..|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 4999999986 233 577766642 2222 12 233344444444433221 4678899
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHh-cCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEE
Q 000674 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1358)
Q Consensus 721 SGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1358)
||||||||.||+|+..+|+++|+||||+|||+.++++|.+.+.... ..|.++|+||||+..+.+ ||||+||++|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999998776554 358999999999999887 89999999999999
Q ss_pred ecChHHHHhc
Q 000674 799 SGNYQELLLA 808 (1358)
Q Consensus 799 ~g~~~~l~~~ 808 (1358)
.|+.+++.++
T Consensus 236 ~G~~~~i~~~ 245 (539)
T COG1123 236 TGPTEEILSN 245 (539)
T ss_pred ecCHHHHHhc
Confidence 9999998754
No 79
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.7e-46 Score=464.33 Aligned_cols=193 Identities=22% Similarity=0.399 Sum_probs=158.4
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC--CCcEEEEcC--------------
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK--ISGTVNLYG-------------- 658 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~--~~G~i~~~g-------------- 658 (1358)
++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 688999999963 4699999999999999999999999999999999999987 799999876
Q ss_pred eEEEEeCCCCCC-CCCHHHHHhcCCCC-------CHH----HHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHH
Q 000674 659 SIAYVSQTSWIQ-SGSIRDNILYGKPM-------DKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1358)
Q Consensus 659 ~i~yv~Q~~~~~-~~tv~eni~~g~~~-------~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 726 (1358)
.++|++|++.++ +.|++||+.++... +.+ +.+++++.+++.... ...+..+|||||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~q 148 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN----------VTRPVGDYGGGQQQ 148 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc----------ccCchhhCCHHHHH
Confidence 389999998754 56999999886421 111 222233333322110 11346789999999
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEec
Q 000674 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1358)
Q Consensus 727 Rv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1358)
||+||||++.+|+++||||||++||+...+.+.+.+.....+|+|+|++||+++++.. ||+|++|++|+++..|
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~ 223 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATK 223 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeec
Confidence 9999999999999999999999999999999988766555568999999999999876 8999999999987543
No 80
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=5.1e-46 Score=461.55 Aligned_cols=198 Identities=24% Similarity=0.417 Sum_probs=168.5
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------~ 659 (1358)
.++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 5899999999973 4699999999999999999999999999999999999999999999876 2
Q ss_pred EEEEeCCCCCC-CCCHHHHHhcCCCCC---HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHh
Q 000674 660 IAYVSQTSWIQ-SGSIRDNILYGKPMD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1358)
Q Consensus 660 i~yv~Q~~~~~-~~tv~eni~~g~~~~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~ 735 (1358)
++|++|++.++ +.|++||+.++.... +++..+.++..++... ...+..+|||||||||+||||++
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLD-----------LDSSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcc-----------ccCChhhCCHHHHHHHHHHHHHH
Confidence 89999998765 569999999875322 2344445555554322 23567789999999999999999
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHH
Q 000674 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1358)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1358)
.+|+++||||||++||+...+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence 9999999999999999999999988766555568999999999999865 899999999999988876654
No 81
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-45 Score=460.06 Aligned_cols=206 Identities=18% Similarity=0.319 Sum_probs=161.8
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCCCC-C
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQ-S 671 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--~i~yv~Q~~~~~-~ 671 (1358)
|+++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +++|++|++.++ +
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 78 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEE 78 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCC
Confidence 688999999963 4699999999999999999999999999999999999999999999976 699999997654 5
Q ss_pred CCHHHHHhcCCC-C------------------C-HHHHHHHHH----------HhccHHHHhcCCCCCCccccCCCCCCC
Q 000674 672 GSIRDNILYGKP-M------------------D-KARYDKAIK----------ACALDKDINNFDHGDLTEIGQRGLNLS 721 (1358)
Q Consensus 672 ~tv~eni~~g~~-~------------------~-~~~~~~~~~----------~~~l~~dl~~l~~gd~t~ig~~g~~LS 721 (1358)
.|++||+.++.. . + ...+.+..+ ......-++.+...+. .......+||
T Consensus 79 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~~LS 157 (530)
T PRK15064 79 FTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE-QHYGLMSEVA 157 (530)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh-HhcCchhhcC
Confidence 699999987531 0 0 000000000 0011122233322110 0124567999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEE-Ee
Q 000674 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QS 799 (1358)
Q Consensus 722 GGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~ 799 (1358)
|||||||+||||++.+|+++||||||++||+...+++.+.+. ..++|||+||||++++.. ||+|++|++|+++ +.
T Consensus 158 gGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~ 234 (530)
T PRK15064 158 PGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLN---ERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYP 234 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH---hCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEec
Confidence 999999999999999999999999999999999999877553 247899999999999876 8999999999994 78
Q ss_pred cChHHHHh
Q 000674 800 GNYQELLL 807 (1358)
Q Consensus 800 g~~~~l~~ 807 (1358)
|+++++++
T Consensus 235 g~~~~~~~ 242 (530)
T PRK15064 235 GNYDEYMT 242 (530)
T ss_pred CCHHHHHH
Confidence 99988764
No 82
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=4.4e-46 Score=461.91 Aligned_cols=193 Identities=20% Similarity=0.335 Sum_probs=160.8
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------~ 659 (1358)
-++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4889999999963 4699999999999999999999999999999999999999999999876 3
Q ss_pred EEEEeCCCCCC-CCCHHHHHhcCCCC-------CHH----HHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000674 660 IAYVSQTSWIQ-SGSIRDNILYGKPM-------DKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1358)
Q Consensus 660 i~yv~Q~~~~~-~~tv~eni~~g~~~-------~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 727 (1358)
++|++|++.++ +.|++||+.++... +.+ +..++++.+++. +. ...+..+||||||||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---------~~--~~~~~~~LSgG~~qr 149 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLR---------FS--SDKLVGELSIGEQQM 149 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCC---------CC--ccCchhhCCHHHHHH
Confidence 89999998654 57999999986421 121 222333333332 21 235678999999999
Q ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEec
Q 000674 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1358)
Q Consensus 728 v~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1358)
++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++|||++.+.. ||+|++|++|++++.|
T Consensus 150 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~ 223 (501)
T PRK10762 150 VEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAER 223 (501)
T ss_pred HHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEec
Confidence 999999999999999999999999999999987665554568899999999999876 8999999999998754
No 83
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=4.7e-46 Score=464.07 Aligned_cols=194 Identities=26% Similarity=0.395 Sum_probs=160.3
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCc--cCCCcEEEEc---------------
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLY--------------- 657 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~--~~~~G~i~~~--------------- 657 (1358)
++++|++++|+. +++|+|+||++.+||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 468999999963 46999999999999999999999999999999999997 7999999875
Q ss_pred --------C-----------------------eEEEEeCC-CCC-CCCCHHHHHhcCCC---CC----HHHHHHHHHHhc
Q 000674 658 --------G-----------------------SIAYVSQT-SWI-QSGSIRDNILYGKP---MD----KARYDKAIKACA 697 (1358)
Q Consensus 658 --------g-----------------------~i~yv~Q~-~~~-~~~tv~eni~~g~~---~~----~~~~~~~~~~~~ 697 (1358)
| .++|++|+ +.+ ...|++||+.++.. .+ .++..++++.++
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 1 28999997 444 45799999987521 22 134455566666
Q ss_pred cHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEc
Q 000674 698 LDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVT 776 (1358)
Q Consensus 698 l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvt 776 (1358)
+...++ ++..+|||||||||+||||++.+|+++||||||++||+.+.+++.+.+..... .|+|||+||
T Consensus 158 l~~~~~-----------~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivt 226 (520)
T TIGR03269 158 LSHRIT-----------HIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226 (520)
T ss_pred Chhhhh-----------cCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 643322 56778999999999999999999999999999999999999999876655433 489999999
Q ss_pred CCcchhhc-cCeEEEEeCCeEEEecCh
Q 000674 777 HQVEFLSE-VDRILVLEGGQITQSGNY 802 (1358)
Q Consensus 777 H~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1358)
||++.+.. ||+|++|++|++++.|++
T Consensus 227 Hd~~~~~~~~d~i~~l~~G~i~~~g~~ 253 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGTP 253 (520)
T ss_pred CCHHHHHHhcCEEEEEeCCEEeeecCH
Confidence 99999875 899999999999765543
No 84
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3e-43 Score=472.15 Aligned_cols=202 Identities=24% Similarity=0.354 Sum_probs=172.9
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eE
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------------~i 660 (1358)
..|+++|+++.|+++ ++++++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++| .+
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcE
Confidence 468999999999632 35799999999999999999999999999999999999999999999987 38
Q ss_pred EEEeCCCCCC-CCCHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000674 661 AYVSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1358)
Q Consensus 661 ~yv~Q~~~~~-~~tv~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 732 (1358)
|||||++.++ +.||+||+.|+.. .. +++.++.++.++|.+.. .++..+||||||||++|||
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~-----------~~~~~~LSGGqKQRLsLAr 1074 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKR-----------NEEAQDLSGGMQRKLSVAI 1074 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHH
Confidence 9999998765 5799999987421 12 23344555555554322 3567899999999999999
Q ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHh
Q 000674 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1358)
Q Consensus 733 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1358)
|++.+|+++||||||||||+..++++++.+.+. .+|+|+|++||+++.+.. ||||++|++|++...|+.+++.+
T Consensus 1075 ALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l-~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257 1075 AFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY-RSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHH-hCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999998876654 468999999999999876 89999999999999999998864
No 85
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=4.9e-46 Score=460.89 Aligned_cols=196 Identities=22% Similarity=0.324 Sum_probs=166.7
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~i~ 661 (1358)
++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++
T Consensus 4 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 4 LQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred EEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 789999999963 3599999999999999999999999999999999999999999998765 279
Q ss_pred EEeCCCCC---------CCCCHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000674 662 YVSQTSWI---------QSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1358)
Q Consensus 662 yv~Q~~~~---------~~~tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 732 (1358)
|++|++.. +..|++||+.++.. +.++.+++++..++....+ .+..+||||||||++|||
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~ 148 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITALLD-----------RRFKYLSTGETRKTLLCQ 148 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHhhhh-----------CCcccCCHHHHHHHHHHH
Confidence 99998642 14689999876521 2445666777776654332 567789999999999999
Q ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHH
Q 000674 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1358)
Q Consensus 733 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1358)
|++.+|+++||||||++||+...+++.+.+.....+|+|+|++||+++.+.. ||++++|++|+++..|+++++
T Consensus 149 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 222 (490)
T PRK10938 149 ALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEI 222 (490)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999988776655568999999999999876 899999999999988876654
No 86
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-45 Score=413.21 Aligned_cols=391 Identities=18% Similarity=0.255 Sum_probs=326.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccChhhHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH-HHh
Q 000674 956 SFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMT-FVT 1034 (1358)
Q Consensus 956 ~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~i~v~~-~~~ 1034 (1358)
..++...+..+.+.+--+.|.|++.+.+.|.-+..+|.+..-...-..-|+..+.+.+..++..++.+....+++. ..+
T Consensus 3 ~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~ 82 (497)
T COG5265 3 DRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYG 82 (497)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcc
Confidence 3455667777888888889999999999999888777655444444445555566666666666666665555554 468
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHH
Q 000674 1035 WQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHT 1114 (1358)
Q Consensus 1035 ~~l~~~~l~~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~G~~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~ 1114 (1358)
|+++++.+..+++|.++......---..+|...++.+...+.-.+++-+-.|++.||.|+.+..+|...++.+.++..+.
T Consensus 83 ~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~ 162 (497)
T COG5265 83 WWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKV 162 (497)
T ss_pred cHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHH
Confidence 99988888887777766544444444566777777888888999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcC
Q 000674 1115 NGVMEWLILRVEALQNLTLFTAALF-LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHI 1193 (1358)
Q Consensus 1115 ~~~~~wl~~~l~~l~~~~~~~~~~~-~~l~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~ 1193 (1358)
.....||.+.-..+........... ...+..|.++.|.+.....|..++..|++.+...+.++.++..-.|+.++.++.
T Consensus 163 ~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~ 242 (497)
T COG5265 163 HVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDV 242 (497)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhcc
Confidence 8888888876655544433332222 233467899999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCcCCCCCCCCCC-CcceEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCC
Q 000674 1194 PPEPPAIVEDKRPPSSWP-FKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272 (1358)
Q Consensus 1194 ~~E~~~~~~~~~~~~~wp-~~G~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G 1272 (1358)
+.|.. +....|+.|| ..|.|.|+||+|.|.|..| +|+|+||++++|+++||||++|+||||+..+|+||||+++|
T Consensus 243 ~~~v~---d~pda~~L~~~~~g~v~F~~V~F~y~~~r~-iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG 318 (497)
T COG5265 243 EAEVS---DAPDAPPLWPVRLGAVAFINVSFAYDPRRP-ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG 318 (497)
T ss_pred chhhc---cCCCCccccccccceEEEEEEEeeccccch-hhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc
Confidence 76643 2333456675 4689999999999988765 99999999999999999999999999999999999999999
Q ss_pred EEEEcCEeCCCCChHHHhhcCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCccccccccCC
Q 000674 1273 SILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSEQITY 1350 (1358)
Q Consensus 1273 ~I~IDGvDI~~i~l~~LRs~IsiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~Gldt~v~e~g 1350 (1358)
+|.|||.||+++..+.||+.||+||||.+||++|+..|+...+ ..|+||+++|++.|++++||+++|+||||.|||-|
T Consensus 319 ~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerg 397 (497)
T COG5265 319 SITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERG 397 (497)
T ss_pred eEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhe
Confidence 9999999999999999999999999999999999999997544 47999999999999999999999999999999966
No 87
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=7.3e-45 Score=455.41 Aligned_cols=206 Identities=26% Similarity=0.347 Sum_probs=163.3
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCCCC-
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQ- 670 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--~i~yv~Q~~~~~- 670 (1358)
-++++|++++|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ ++|||+|+|.++
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 83 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDP 83 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCC
Confidence 5899999999962 24699999999999999999999999999999999999999999999864 699999999876
Q ss_pred CCCHHHHHhcCCC-CC---------------H-H-------HHHHHHHH----------hccHHHHhcCCCCCCccccCC
Q 000674 671 SGSIRDNILYGKP-MD---------------K-A-------RYDKAIKA----------CALDKDINNFDHGDLTEIGQR 716 (1358)
Q Consensus 671 ~~tv~eni~~g~~-~~---------------~-~-------~~~~~~~~----------~~l~~dl~~l~~gd~t~ig~~ 716 (1358)
+.|++||+.++.. +. . + ++.++.+. ..+...++.+... ....+
T Consensus 84 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~---~~~~~ 160 (556)
T PRK11819 84 EKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP---PWDAK 160 (556)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC---cccCc
Confidence 4699999987531 00 0 0 00011000 0111222333221 12467
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCe
Q 000674 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1358)
Q Consensus 717 g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1358)
..+|||||||||+||||++.+|+++|||||||+||+...+++.+.+.. . ++|+|+|||+++++.. ||+|++|++|+
T Consensus 161 ~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~-~--~~tviiisHd~~~~~~~~d~i~~l~~g~ 237 (556)
T PRK11819 161 VTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHD-Y--PGTVVAVTHDRYFLDNVAGWILELDRGR 237 (556)
T ss_pred hhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHh-C--CCeEEEEeCCHHHHHhhcCeEEEEeCCE
Confidence 789999999999999999999999999999999999999998765433 2 3599999999999976 89999999999
Q ss_pred EE-EecChHHHHh
Q 000674 796 IT-QSGNYQELLL 807 (1358)
Q Consensus 796 i~-~~g~~~~l~~ 807 (1358)
++ +.|+++++.+
T Consensus 238 i~~~~g~~~~~~~ 250 (556)
T PRK11819 238 GIPWEGNYSSWLE 250 (556)
T ss_pred EEEecCCHHHHHH
Confidence 86 7899888754
No 88
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-45 Score=454.79 Aligned_cols=192 Identities=22% Similarity=0.350 Sum_probs=160.6
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------~ 659 (1358)
.++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4889999999963 4699999999999999999999999999999999999999999998865 3
Q ss_pred EEEEeCCCCCC-CCCHHHHHhcCCC------CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHH
Q 000674 660 IAYVSQTSWIQ-SGSIRDNILYGKP------MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1358)
Q Consensus 660 i~yv~Q~~~~~-~~tv~eni~~g~~------~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 728 (1358)
++|++|++.++ +.|++||+.++.. .+. ++..+.++.+++.. ....+..+||||||||+
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv 149 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI-----------DPDTPLKYLSIGQRQMV 149 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCC-----------CcCCchhhCCHHHHHHH
Confidence 89999998765 4699999998631 121 12333344433321 12356789999999999
Q ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEe
Q 000674 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQS 799 (1358)
Q Consensus 729 ~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~ 799 (1358)
+||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++++.. ||+|++|++|+++..
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~ 221 (501)
T PRK11288 150 EIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVAT 221 (501)
T ss_pred HHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 99999999999999999999999999999988766554568999999999999866 899999999998753
No 89
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-45 Score=451.26 Aligned_cols=190 Identities=26% Similarity=0.342 Sum_probs=157.3
Q ss_pred EeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------eEEEE
Q 000674 598 QEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SIAYV 663 (1358)
Q Consensus 598 ~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------~i~yv 663 (1358)
+|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 2 ~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 2 SNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 578888863 4699999999999999999999999999999999999999999999876 38999
Q ss_pred eCCCCC-CCCCHHHHHhcCCC------CCHH----HHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000674 664 SQTSWI-QSGSIRDNILYGKP------MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1358)
Q Consensus 664 ~Q~~~~-~~~tv~eni~~g~~------~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 732 (1358)
+|++.+ ++.|++||+.++.. .+.+ +.+++++.+++.. ....+..+|||||||||+|||
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv~lA~ 147 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI-----------DPRAKVATLSVSQMQMIEIAK 147 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCC-----------CccCchhhCCHHHHHHHHHHH
Confidence 999865 46799999987631 1221 1222233222221 123567899999999999999
Q ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecC
Q 000674 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1358)
Q Consensus 733 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1358)
|++.+|+++||||||++||+.+.+++.+.+.....+|+|+|++||+++++.. ||++++|++|++++.|+
T Consensus 148 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~ 217 (491)
T PRK10982 148 AFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQP 217 (491)
T ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999988766555568999999999999875 89999999999987654
No 90
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.2e-44 Score=451.06 Aligned_cols=206 Identities=27% Similarity=0.353 Sum_probs=166.0
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCCCC-
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQ- 670 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--~i~yv~Q~~~~~- 670 (1358)
-++++|++++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++ .|+|++|+|+++
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 81 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDP 81 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCC
Confidence 4789999999962 24699999999999999999999999999999999999999999999874 699999999875
Q ss_pred CCCHHHHHhcCCCC------------------CH---------HHHHHHHHHhccH-------HHHhcCCCCCCccccCC
Q 000674 671 SGSIRDNILYGKPM------------------DK---------ARYDKAIKACALD-------KDINNFDHGDLTEIGQR 716 (1358)
Q Consensus 671 ~~tv~eni~~g~~~------------------~~---------~~~~~~~~~~~l~-------~dl~~l~~gd~t~ig~~ 716 (1358)
+.|++||+.++... +. .++.+.++.++.. .-++.+... ....+
T Consensus 82 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~ 158 (552)
T TIGR03719 82 TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP---PWDAD 158 (552)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC---cccCc
Confidence 57999999875310 01 1222333333321 122233221 12467
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCe
Q 000674 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1358)
Q Consensus 717 g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1358)
..+|||||||||+||||++.+|+++||||||++||+.+.+++.+.+.. . ++|+|+|||+++++.. ||++++|++|+
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~-~--~~tvIiisHd~~~~~~~~d~v~~l~~g~ 235 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQE-Y--PGTVVAVTHDRYFLDNVAGWILELDRGR 235 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHh-C--CCeEEEEeCCHHHHHhhcCeEEEEECCE
Confidence 789999999999999999999999999999999999999998775433 2 3599999999999986 89999999999
Q ss_pred EE-EecChHHHHh
Q 000674 796 IT-QSGNYQELLL 807 (1358)
Q Consensus 796 i~-~~g~~~~l~~ 807 (1358)
++ +.|+++++.+
T Consensus 236 i~~~~g~~~~~~~ 248 (552)
T TIGR03719 236 GIPWEGNYSSWLE 248 (552)
T ss_pred EEEecCCHHHHHH
Confidence 76 7899888764
No 91
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-45 Score=423.77 Aligned_cols=263 Identities=25% Similarity=0.361 Sum_probs=221.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccchhcccccCCCCcEEEEeeEEEeCCC
Q 000674 528 APLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPE 607 (1358)
Q Consensus 528 ~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~ 607 (1358)
++++|+++|+++++|+.+..++..+|..... .+|++.|+..+|.+...+.. ..+..+.|+++|++++|+.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~nls~~y~~~ 93 (329)
T PRK14257 23 NELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKE--DFNHANVFEIRNFNFWYMNR 93 (329)
T ss_pred chhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccC--CCCcCceEEEEeeEEEecCC
Confidence 6799999999999999999999988876543 57999998877654321111 12344689999999999753
Q ss_pred CCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC---------------eEEEEeCCC
Q 000674 608 LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG---------------SIAYVSQTS 667 (1358)
Q Consensus 608 ~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~-----~~~G~i~~~g---------------~i~yv~Q~~ 667 (1358)
..++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++| +++||||+|
T Consensus 94 -~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~ 172 (329)
T PRK14257 94 -TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKP 172 (329)
T ss_pred -CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCC
Confidence 3579999999999999999999999999999999999996 5799988654 599999999
Q ss_pred CCCCCCHHHHHhcCCCC---C-HH----HHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 000674 668 WIQSGSIRDNILYGKPM---D-KA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1358)
Q Consensus 668 ~~~~~tv~eni~~g~~~---~-~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~ 739 (1358)
|++++|++|||.|+..+ + ++ .+.++++.|++..+++ +.+++++.+||||||||++||||++++|+
T Consensus 173 ~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~-------~~~~~~~~~LSgGqkqRl~LARAl~~~p~ 245 (329)
T PRK14257 173 TPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVK-------DDLDKAGNALSGGQQQRLCIARAIALEPE 245 (329)
T ss_pred ccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhh-------hhhhCCcccCCHHHHHHHHHHHHHHhCCC
Confidence 99999999999986432 1 22 3667788888765553 56789999999999999999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhc
Q 000674 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 740 illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1358)
|+||||||+|||+++.+++. +++....+++|+|+|||+++++.. ||+|++|++|+|++.|+++++...
T Consensus 246 IlLLDEPts~LD~~~~~~i~-~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~ 314 (329)
T PRK14257 246 VLLMDEPTSALDPIATAKIE-ELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIH 314 (329)
T ss_pred EEEEeCCcccCCHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999965 455555667999999999999987 999999999999999999998754
No 92
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.2e-41 Score=426.69 Aligned_cols=381 Identities=15% Similarity=0.142 Sum_probs=290.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccChhhHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHH
Q 000674 946 TASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLA 1025 (1358)
Q Consensus 946 ~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~D~~~id~~l~~~l~~~~~~~~~~l~ 1025 (1358)
++..++.+++.++....+.+...+++.++++++++.|++||+++++|++++|+++|++.+...+. .+..++..++.+++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~ 137 (547)
T PRK10522 59 LLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLG 137 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 33345667778888889999999999999999999999999999999999999999999987654 46667778888888
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccH---HHHHHHHHH
Q 000674 1026 IIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMV---DRFFQNYLK 1102 (1358)
Q Consensus 1026 ~i~v~~~~~~~l~~~~l~~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~G~~tIRAf~~e---~~f~~~~~~ 1102 (1358)
.++++++++|.++++++..+++..++..++.+..++..+...+..+...+++.|.++|+.+|+ ++.+ +.+.+++.+
T Consensus 138 ~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~ 216 (547)
T PRK10522 138 SAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEP 216 (547)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhH
Confidence 888999999999888777777766666666666666666667778899999999999999995 5443 456677777
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000674 1103 LVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLI-PRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYI 1181 (1358)
Q Consensus 1103 ~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~l~-~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~ 1181 (1358)
..+...+.................++. .+..++..+.. ..+..+.+.++++..+.+.+..|+..+...+.+++...
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~ 293 (547)
T PRK10522 217 DAQEYRHHIIRADTFHLSAVNWSNIMM---LGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQ 293 (547)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655444332221111111111111 11111111111 01122334444444555567789999999999999999
Q ss_pred hHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHH
Q 000674 1182 ISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLIS 1261 (1358)
Q Consensus 1182 ~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~ 1261 (1358)
.+.+|+.++.+.|+|++. ++..+. |..+.|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||++
T Consensus 294 ~a~~ri~~l~~~~~~~~~--~~~~~~---~~~~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ 367 (547)
T PRK10522 294 VAFNKLNKLALAPYKAEF--PRPQAF---PDWQTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAM 367 (547)
T ss_pred HHHHHHHHHhcccccccc--cccccc---CcCceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 999999998765543221 111111 123689999999999743 46999999999999999999999999999999
Q ss_pred HHhcccCCCCCEEEEcCEeCCCCChHHHhhcCceecccccccccchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCc
Q 000674 1262 ALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNK 1341 (1358)
Q Consensus 1262 lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~IsiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~G 1341 (1358)
+|.|+|+|++|+|.+||+|+++++.+++|+++++|||||++|+||+++| . ...+|++++++++++++.+++.. |+|
T Consensus 368 ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n-~--~~~~~~~~~~~~~~~~l~~~~~~-~~~ 443 (547)
T PRK10522 368 LLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE-G--KPANPALVEKWLERLKMAHKLEL-EDG 443 (547)
T ss_pred HHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc-c--CchHHHHHHHHHHHcCCchhhhc-ccc
Confidence 9999999999999999999999999999999999999999999999999 2 35688999999999999887653 544
No 93
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-42 Score=440.54 Aligned_cols=206 Identities=23% Similarity=0.333 Sum_probs=156.9
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCCCCCC
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSG 672 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--~i~yv~Q~~~~~~~ 672 (1358)
|.++|++++|+. +++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++| .++|++|++.....
T Consensus 2 i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~ 78 (638)
T PRK10636 2 IVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQ 78 (638)
T ss_pred EEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCC
Confidence 678999999974 4699999999999999999999999999999999999999999999987 58999997544445
Q ss_pred CHHHHHhcCCC-C--------------CHHHHHHHHH---H-------hccHHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000674 673 SIRDNILYGKP-M--------------DKARYDKAIK---A-------CALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1358)
Q Consensus 673 tv~eni~~g~~-~--------------~~~~~~~~~~---~-------~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 727 (1358)
|+.+++.-+.. + +...|..... . .....-++.+...+ .....+..+||||||||
T Consensus 79 ~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~-~~~~~~~~~LSgGerqR 157 (638)
T PRK10636 79 PALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSN-EQLERPVSDFSGGWRMR 157 (638)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCc-hhhcCchhhcCHHHHHH
Confidence 76666542110 0 0001100000 0 01111233332210 11235678999999999
Q ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEE-EecChHHH
Q 000674 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSGNYQEL 805 (1358)
Q Consensus 728 v~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~g~~~~l 805 (1358)
|+|||||+.+||+|||||||++||+.+..++.+.+.. . +.|+|+||||++++.. ||+|++|++|++. +.|+|+++
T Consensus 158 v~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~-~--~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 158 LNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKS-Y--QGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSF 234 (638)
T ss_pred HHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHh-C--CCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHH
Confidence 9999999999999999999999999999998765433 2 5699999999999986 8999999999996 67888877
Q ss_pred Hh
Q 000674 806 LL 807 (1358)
Q Consensus 806 ~~ 807 (1358)
..
T Consensus 235 ~~ 236 (638)
T PRK10636 235 EV 236 (638)
T ss_pred HH
Confidence 53
No 94
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-44 Score=372.52 Aligned_cols=202 Identities=26% Similarity=0.424 Sum_probs=178.0
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------~ 659 (1358)
-|+++|++.+|+. ..+|+|||++|++||.++|+||+||||||||++|.|+.+|++|+|.++| +
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 4789999999984 4699999999999999999999999999999999999999999999998 3
Q ss_pred EEEEeCCCCCC-CCCHHHHHhcCC----CCC----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000674 660 IAYVSQTSWIQ-SGSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1358)
Q Consensus 660 i~yv~Q~~~~~-~~tv~eni~~g~----~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 730 (1358)
+|+|+|+..+| +.||.|||..+. ... +++-.+.++..+|.+..+. .+..|||||||||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~-----------yP~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADA-----------YPAQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhh-----------CccccCcHHHHHHHH
Confidence 78999998875 679999998862 122 2344456667777666554 556899999999999
Q ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhcC
Q 000674 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1358)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1358)
||||+.+|+++|+|||||||||+...++.+.......+|.|.|+|||++.|.++ ||||+.|++|+|+++|+++++..+.
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999999999999999999999999999988777777889999999999999988 7999999999999999999998654
No 95
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=4.5e-42 Score=435.91 Aligned_cols=204 Identities=24% Similarity=0.371 Sum_probs=157.5
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe--EEEEeCCCCC-C
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--IAYVSQTSWI-Q 670 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g~--i~yv~Q~~~~-~ 670 (1358)
.++++|++++|+. .++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++|. ++|++|.+.. .
T Consensus 3 ~l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~ 79 (635)
T PRK11147 3 LISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNV 79 (635)
T ss_pred EEEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCC
Confidence 3789999999974 46999999999999999999999999999999999999999999999874 7999997643 3
Q ss_pred CCCHHHHHhcCCCC-------------------CHH---HHHHH---HH-------HhccHHHHhcCCCCCCccccCCCC
Q 000674 671 SGSIRDNILYGKPM-------------------DKA---RYDKA---IK-------ACALDKDINNFDHGDLTEIGQRGL 718 (1358)
Q Consensus 671 ~~tv~eni~~g~~~-------------------~~~---~~~~~---~~-------~~~l~~dl~~l~~gd~t~ig~~g~ 718 (1358)
.+++.+++..+... ..+ .+..+ ++ ......-++.+... ...+..
T Consensus 80 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~----~~~~~~ 155 (635)
T PRK11147 80 EGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD----PDAALS 155 (635)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC----CCCchh
Confidence 46788776432100 000 00000 00 00111122333221 135678
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEE
Q 000674 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1358)
Q Consensus 719 ~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1358)
+|||||||||+||||++.+|++|||||||++||+.+.+++.+.+... +.|+|+||||++++.. ||+|++|++|+++
T Consensus 156 ~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvlivsHd~~~l~~~~d~i~~L~~G~i~ 232 (635)
T PRK11147 156 SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFISHDRSFIRNMATRIVDLDRGKLV 232 (635)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 99999999999999999999999999999999999999987655432 3599999999999986 8999999999997
Q ss_pred -EecChHHHHh
Q 000674 798 -QSGNYQELLL 807 (1358)
Q Consensus 798 -~~g~~~~l~~ 807 (1358)
+.|+|+++..
T Consensus 233 ~~~g~~~~~~~ 243 (635)
T PRK11147 233 SYPGNYDQYLL 243 (635)
T ss_pred EecCCHHHHHH
Confidence 5698888764
No 96
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=4.3e-42 Score=416.41 Aligned_cols=206 Identities=28% Similarity=0.420 Sum_probs=166.6
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCCCC-
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQ- 670 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--~i~yv~Q~~~~~- 670 (1358)
.|.++|++++|+ ++++|+|+|+++.+|+++||||+||+||||||++|.|+..|++|+|...+ +++|++|++...
T Consensus 3 ~i~~~~ls~~~g---~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~ 79 (530)
T COG0488 3 MITLENLSLAYG---DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDP 79 (530)
T ss_pred eEEEeeeEEeeC---CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCC
Confidence 478999999995 35799999999999999999999999999999999999999999999987 799999999876
Q ss_pred CCCHHHHHhcCCCCC---HHHHHHHHH------------------H-------hccHHHHhcCCCCCCccccCCCCCCCh
Q 000674 671 SGSIRDNILYGKPMD---KARYDKAIK------------------A-------CALDKDINNFDHGDLTEIGQRGLNLSG 722 (1358)
Q Consensus 671 ~~tv~eni~~g~~~~---~~~~~~~~~------------------~-------~~l~~dl~~l~~gd~t~ig~~g~~LSG 722 (1358)
+.||+|.+.-+...- ..+++.... . ......+..++..+. ..+..+|||
T Consensus 80 ~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~---~~~~~~LSG 156 (530)
T COG0488 80 EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE---DRPVSSLSG 156 (530)
T ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc---cCchhhcCH
Confidence 459999998764210 111111111 0 112223333332222 356789999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEE-Eec
Q 000674 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSG 800 (1358)
Q Consensus 723 GQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~g 800 (1358)
|||.||+|||||..+||+|||||||++||..+.+++-+.+. ..+| |+|+||||.+||.. |++|+-+++|++. +.|
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~--~~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~G 233 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLK--RYPG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKG 233 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH--hCCC-cEEEEeCCHHHHHHHhhheEEecCCceeEecC
Confidence 99999999999999999999999999999999999866543 3456 99999999999998 7999999999886 789
Q ss_pred ChHHHHhc
Q 000674 801 NYQELLLA 808 (1358)
Q Consensus 801 ~~~~l~~~ 808 (1358)
+|+.+.+.
T Consensus 234 ny~~~~~~ 241 (530)
T COG0488 234 NYSSYLEQ 241 (530)
T ss_pred CHHHHHHH
Confidence 99988754
No 97
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.6e-40 Score=446.80 Aligned_cols=197 Identities=23% Similarity=0.322 Sum_probs=156.3
Q ss_pred CccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEEcC----------eEEEEeCCCC-CCCCCHH
Q 000674 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYG----------SIAYVSQTSW-IQSGSIR 675 (1358)
Q Consensus 610 ~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~---~G~i~~~g----------~i~yv~Q~~~-~~~~tv~ 675 (1358)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++| .++||+|++. +.+.||+
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 257 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVK 257 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHH
Confidence 46899999999999999999999999999999999999998 99999987 3899999975 4578999
Q ss_pred HHHhcCCC-------CC-------HH---------HHHHHHHHhc---------cHHHHhcCC--CCCCccccC-CCCCC
Q 000674 676 DNILYGKP-------MD-------KA---------RYDKAIKACA---------LDKDINNFD--HGDLTEIGQ-RGLNL 720 (1358)
Q Consensus 676 eni~~g~~-------~~-------~~---------~~~~~~~~~~---------l~~dl~~l~--~gd~t~ig~-~g~~L 720 (1358)
||+.|+.. ++ ++ +.+..++++. .+.-++.+. +-.+|.+|. ....|
T Consensus 258 EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rgl 337 (1470)
T PLN03140 258 ETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGI 337 (1470)
T ss_pred HHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCC
Confidence 99988521 10 01 0111111111 112233333 334667764 45789
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcc-hh-hccCeEEEEeCCeEE
Q 000674 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVE-FL-SEVDRILVLEGGQIT 797 (1358)
Q Consensus 721 SGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~-~l-~~~d~i~~l~~G~i~ 797 (1358)
||||||||+|||+++.+|++++|||||+|||+.++.++.+.+.+... .|+|+|+++|++. .+ ..+|+|++|++|+++
T Consensus 338 SGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~iv 417 (1470)
T PLN03140 338 SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIV 417 (1470)
T ss_pred CcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEE
Confidence 99999999999999999999999999999999999999876665543 5899999999973 44 558999999999999
Q ss_pred EecChHHHH
Q 000674 798 QSGNYQELL 806 (1358)
Q Consensus 798 ~~g~~~~l~ 806 (1358)
+.|+.+++.
T Consensus 418 y~G~~~~~~ 426 (1470)
T PLN03140 418 YQGPRDHIL 426 (1470)
T ss_pred EeCCHHHHH
Confidence 999999886
No 98
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=3.5e-40 Score=417.79 Aligned_cols=204 Identities=23% Similarity=0.318 Sum_probs=148.7
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCCCCCCC
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g~i~yv~Q~~~~~~~ 672 (1358)
..|.++|++++|+. .++|+|+||+|++|++++|+|+|||||||||++|+|+.. .| +--+|+|+|++|++.-.+.
T Consensus 176 ~~I~i~nls~~y~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~--~g-~p~~g~I~~~~Q~~~g~~~ 249 (718)
T PLN03073 176 KDIHMENFSISVGG---RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAI--DG-IPKNCQILHVEQEVVGDDT 249 (718)
T ss_pred eeEEEceEEEEeCC---CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CC-CCCCCEEEEEeccCCCCCC
Confidence 46999999999963 359999999999999999999999999999999999741 13 2224678899997544444
Q ss_pred CHHHHHhcCC-------------------------------------CCC--HHHHHHHHHHhcc----------HHHHh
Q 000674 673 SIRDNILYGK-------------------------------------PMD--KARYDKAIKACAL----------DKDIN 703 (1358)
Q Consensus 673 tv~eni~~g~-------------------------------------~~~--~~~~~~~~~~~~l----------~~dl~ 703 (1358)
|+.|.++-.. +.+ .+++.++.+..++ ..-+.
T Consensus 250 t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~ 329 (718)
T PLN03073 250 TALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILA 329 (718)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 5544322100 000 0122222222211 11122
Q ss_pred cCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhh
Q 000674 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS 783 (1358)
Q Consensus 704 ~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~ 783 (1358)
.+...+ .....+..+||||||||++||||++.+|++|||||||++||+...+++.+.+.. . ++|+|+||||++++.
T Consensus 330 ~lgl~~-~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~-~--~~tviivsHd~~~l~ 405 (718)
T PLN03073 330 GLSFTP-EMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLK-W--PKTFIVVSHAREFLN 405 (718)
T ss_pred HCCCCh-HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH-c--CCEEEEEECCHHHHH
Confidence 222110 112345678999999999999999999999999999999999999998775533 2 689999999999998
Q ss_pred c-cCeEEEEeCCeEE-EecChHHHH
Q 000674 784 E-VDRILVLEGGQIT-QSGNYQELL 806 (1358)
Q Consensus 784 ~-~d~i~~l~~G~i~-~~g~~~~l~ 806 (1358)
. ||+|++|++|++. +.|+|+++.
T Consensus 406 ~~~d~i~~l~~g~i~~~~g~~~~~~ 430 (718)
T PLN03073 406 TVVTDILHLHGQKLVTYKGDYDTFE 430 (718)
T ss_pred HhCCEEEEEECCEEEEeCCCHHHHH
Confidence 7 8999999999996 788888764
No 99
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=2e-39 Score=411.98 Aligned_cols=439 Identities=10% Similarity=-0.000 Sum_probs=340.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcC---CCCc-h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 901 LLCLGVLAQSGFVGLQAAATYWLAYAIQI---PKIT-S----GILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFS 972 (1358)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~wl~~~~~~---~~~~-~----~~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~ 972 (1358)
.+++.+++.++...+.+..+++....++. .+.. . ..+..+++++.++..+..++...+......+..+.+|+
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~ 176 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYS 176 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555566777777777665543 1111 1 11222333344455556666677777888889999999
Q ss_pred HHHHHhhcCCcccccccChhhHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHH
Q 000674 973 GFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTF-VTWQVLVVAIFAMVAVRFV 1051 (1358)
Q Consensus 973 ~l~~~ll~~p~~fFd~~p~G~IlnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~i~v~~~-~~~~l~~~~l~~~~~~~~~ 1051 (1358)
+.+++....++.|||+ ++|++++|+++|++.+...+...+..++..++.+++.+++++. .+|.+.++++..+++..++
T Consensus 177 ~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i 255 (659)
T TIGR00954 177 KYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVV 255 (659)
T ss_pred HHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 9999999999999997 8999999999999999999999999999999988888887776 8999988888888888888
Q ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 000674 1052 QRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNL 1131 (1358)
Q Consensus 1052 ~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~G~~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~ 1131 (1358)
.+++.+..+++.+..+...+...+.++|.++|+++||+|+.++.+.+++.+..++..+..........++....+++...
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 335 (659)
T TIGR00954 256 LTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKY 335 (659)
T ss_pred HHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888888877777777777766666432
Q ss_pred H--HHHHHHH-H-HHhc----CCccchhHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCC
Q 000674 1132 T--LFTAALF-L-VLIP----RGYVAPGLVG-LSLSY---AFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPA 1199 (1358)
Q Consensus 1132 ~--~~~~~~~-~-~l~~----~g~is~g~~g-l~l~y---a~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~ 1199 (1358)
. .+...+. . ++.. .|.++.|... .+++| ..++..++..+...+.+++...++.+|+.++++.++|...
T Consensus 336 ~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~ 415 (659)
T TIGR00954 336 TWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKS 415 (659)
T ss_pred HHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 1111111 1 2222 2678887643 35555 5667889999999999999999999999999975433110
Q ss_pred ------CcCCCC------------C--CCCCCCcceEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHH
Q 000674 1200 ------IVEDKR------------P--PSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTL 1259 (1358)
Q Consensus 1200 ------~~~~~~------------~--~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL 1259 (1358)
..++.. + ...-...|.|+++||+++|+++ +++|+|+||+|++||++||||++|||||||
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGKSTL 494 (659)
T TIGR00954 416 GNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGKSSL 494 (659)
T ss_pred ccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCHHHH
Confidence 000000 0 0000134679999999999644 359999999999999999999999999999
Q ss_pred HHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCceecccccccccchhhhcCCC--------CCCCHHHHHHHHHHcCC
Q 000674 1260 ISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL--------GLYSDDEIWKALEKCQL 1331 (1358)
Q Consensus 1260 ~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~IsiVpQdp~LF~GTIR~NLdp~--------~~~sDeeI~~AL~~a~l 1331 (1358)
+++|.|+++|++|+|.+|+ |+++++|||||.+|++|+|+||... .+.++++++++++.+++
T Consensus 495 l~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l 563 (659)
T TIGR00954 495 FRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQL 563 (659)
T ss_pred HHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCC
Confidence 9999999999999999875 7889999999999999999999521 23578999999999999
Q ss_pred chHHhcCCCccccccccCCcCCCC
Q 000674 1332 KTTISSLPNKLDSSEQITYDYGWS 1355 (1358)
Q Consensus 1332 ~~~I~~Lp~Gldt~v~e~g~~n~s 1355 (1358)
++++.. |.||||..+ .|+ +-|
T Consensus 564 ~~~~~~-~~g~~~~~~-~~~-~LS 584 (659)
T TIGR00954 564 THILER-EGGWSAVQD-WMD-VLS 584 (659)
T ss_pred HHHHhh-cCCcccccc-ccc-CCC
Confidence 999987 999999875 444 444
No 100
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.8e-40 Score=368.05 Aligned_cols=206 Identities=23% Similarity=0.430 Sum_probs=164.6
Q ss_pred CcEEEEeeEEEeCCC-CCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC--------
Q 000674 593 RSVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG-------- 658 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~-~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~-----~~G~i~~~g-------- 658 (1358)
.-+.++|.+.++..+ ....++++|||++.+||.+|+||.+|||||-..++++|+++. -+|+|.++|
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 357788887777532 345789999999999999999999999999999999999975 478998876
Q ss_pred ---------eEEEEeCCCCC-CC--CCHHHHH----hcCCCCC----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCC
Q 000674 659 ---------SIAYVSQTSWI-QS--GSIRDNI----LYGKPMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718 (1358)
Q Consensus 659 ---------~i~yv~Q~~~~-~~--~tv~eni----~~g~~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~ 718 (1358)
+|+.++|+|-- .| .||..-| ...+... +++..+.++..++.+--. .+...+.
T Consensus 85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~--------rl~~yPH 156 (534)
T COG4172 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEK--------RLDAYPH 156 (534)
T ss_pred HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhh--------hhhhCCc
Confidence 59999999953 23 3665544 3333322 344455555555543222 2446788
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeE
Q 000674 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1358)
Q Consensus 719 ~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1358)
+|||||||||.||.|+..+||+||-||||.|||..+..+|.+.+..... .|-.++++|||+..+++ ||||.||.+|++
T Consensus 157 eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~i 236 (534)
T COG4172 157 ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEI 236 (534)
T ss_pred ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEE
Confidence 9999999999999999999999999999999999999999886655433 48899999999999987 899999999999
Q ss_pred EEecChHHHH
Q 000674 797 TQSGNYQELL 806 (1358)
Q Consensus 797 ~~~g~~~~l~ 806 (1358)
+|.|+.+++.
T Consensus 237 vE~~~t~~lF 246 (534)
T COG4172 237 VETGTTETLF 246 (534)
T ss_pred eecCcHHHHh
Confidence 9998876664
No 101
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=6.8e-41 Score=380.50 Aligned_cols=222 Identities=27% Similarity=0.363 Sum_probs=201.6
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~i 660 (1358)
.|+++|++++|+.+ ..++|+|+||+|++||+++|+|+||||||||+++|.|+++ .+|+|.++| ++
T Consensus 2 ~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 2 QMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred eEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 58999999999743 3469999999999999999999999999999999999998 799999987 48
Q ss_pred EEEeCCCCCCCCCHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000674 661 AYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1358)
Q Consensus 661 ~yv~Q~~~~~~~tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~i 740 (1358)
+|+||+|+++++|++||+....++..++..++++.+++...++.+|.+.+|.+++.|.+||||||||++||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999964334667788899999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHHhcCchHHHHHHh
Q 000674 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818 (1358)
Q Consensus 741 llLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 818 (1358)
+||||||++||+.+.+.+.+.+.. ..+++|+|+|||+++.+..||+|++|++|++++.|+++++++++..|++++..
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~-~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 236 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQ-AFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISP 236 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHH-hcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhh
Confidence 999999999999999988765543 34689999999999998889999999999999999999999877777777654
No 102
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-41 Score=358.49 Aligned_cols=203 Identities=30% Similarity=0.407 Sum_probs=175.9
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~i~ 661 (1358)
|+++|+++.|.+ ..+++|+||+|++||+++++||+||||||+|++|.++++|++|+|.++| +||
T Consensus 2 I~~~nvsk~y~~---~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYGN---KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcCC---ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 789999999983 5699999999999999999999999999999999999999999999998 499
Q ss_pred EEeCCCCC-CCCCHHHHHhcCC---CCCHH----HHHHHHHHhccHH-HHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000674 662 YVSQTSWI-QSGSIRDNILYGK---PMDKA----RYDKAIKACALDK-DINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1358)
Q Consensus 662 yv~Q~~~~-~~~tv~eni~~g~---~~~~~----~~~~~~~~~~l~~-dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 732 (1358)
||-|+.-+ ++.||.|||.+-. .++++ |.++.++..+|++ ++. .+.+.+|||||+|||.+||
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~----------~RyP~eLSGGQQQRVGv~R 148 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYA----------DRYPHELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHh----------hcCchhcCcchhhHHHHHH
Confidence 99998765 5889999998742 34544 4455666666654 222 2567899999999999999
Q ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchh-hccCeEEEEeCCeEEEecChHHHHhcCc
Q 000674 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLAGT 810 (1358)
Q Consensus 733 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1358)
||..+|+++|+||||+||||-+.+.+-+++..... -|||+|+||||++.. +-+|||.+|++|++++.++|++++.++.
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pa 228 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPA 228 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCcc
Confidence 99999999999999999999999998777665443 389999999999885 5599999999999999999999998754
No 103
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-41 Score=369.21 Aligned_cols=204 Identities=26% Similarity=0.387 Sum_probs=176.5
Q ss_pred EEEEeeEEEeCCC--CCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000674 595 VKIQEGNFSWDPE--LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1358)
Q Consensus 595 i~~~~~~f~~~~~--~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------- 658 (1358)
|+++++++.|... ....+++|+||+|++||+.+|+|.+|+|||||+++|.++..|++|+|.++|
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999863 235689999999999999999999999999999999999999999999998
Q ss_pred --eEEEEeCCCCCCC-CCHHHHHhcCCCC---C-HH---HHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHH
Q 000674 659 --SIAYVSQTSWIQS-GSIRDNILYGKPM---D-KA---RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1358)
Q Consensus 659 --~i~yv~Q~~~~~~-~tv~eni~~g~~~---~-~~---~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 728 (1358)
+||+++|++.+++ .||.|||.|+.+. . ++ |..+.++..+|.+.. +..+.+|||||||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~-----------~~yP~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKA-----------DRYPAQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhh-----------ccCchhcCcchhhHH
Confidence 4999999998876 7999999997542 2 23 334444445555332 356789999999999
Q ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHH
Q 000674 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806 (1358)
Q Consensus 729 ~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 806 (1358)
+|||||..+|+|||.|||||||||++.+.|.+.+.+... -|-|+++|||.++.++. |||+.||++|+++++|+..++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 999999999999999999999999999999987665443 48999999999999987 9999999999999999999998
Q ss_pred hcC
Q 000674 807 LAG 809 (1358)
Q Consensus 807 ~~~ 809 (1358)
.++
T Consensus 231 ~~P 233 (339)
T COG1135 231 ANP 233 (339)
T ss_pred cCc
Confidence 665
No 104
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-41 Score=362.80 Aligned_cols=190 Identities=33% Similarity=0.453 Sum_probs=165.4
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------eEEEEeC
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQ 665 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------~i~yv~Q 665 (1358)
.+.+++++.+|+. ..+|+|+||+|++||+++|+|||||||||||++|+|+.+|++|+|.++| .++||+|
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ 79 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQ 79 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEec
Confidence 4789999999985 5799999999999999999999999999999999999999999999987 5899999
Q ss_pred CCCC-CCCCHHHHHhcCCCCC-------HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcC
Q 000674 666 TSWI-QSGSIRDNILYGKPMD-------KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1358)
Q Consensus 666 ~~~~-~~~tv~eni~~g~~~~-------~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~ 737 (1358)
++-+ +..||+|||.+|.+.. .++..+.++.++|...-+ ..+.+|||||||||+||||++.+
T Consensus 80 ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~-----------~~P~qLSGGMrQRVaiARAL~~~ 148 (248)
T COG1116 80 EDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFED-----------KYPHQLSGGMRQRVAIARALATR 148 (248)
T ss_pred cCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhh-----------cCccccChHHHHHHHHHHHHhcC
Confidence 9875 5789999999986531 235666677777765444 45678999999999999999999
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeC--CeEE
Q 000674 738 ADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEG--GQIT 797 (1358)
Q Consensus 738 ~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~--G~i~ 797 (1358)
|+++||||||+|||+.|+.++.+.+.+.+. .++|+++||||+++.-. +|||++|.+ |+|.
T Consensus 149 P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 149 PKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred CCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 999999999999999999999888877654 47999999999998654 899999998 4453
No 105
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.3e-41 Score=364.93 Aligned_cols=201 Identities=32% Similarity=0.531 Sum_probs=175.3
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------eEEE
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAY 662 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g----------~i~y 662 (1358)
..|+++|++++|+++ ++|+||||++++|++++|+||||||||||+++|+|+++|.+|+|.+.| +|||
T Consensus 3 ~~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgY 79 (254)
T COG1121 3 PMIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGY 79 (254)
T ss_pred cEEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEE
Confidence 358999999999853 599999999999999999999999999999999999999999999876 4999
Q ss_pred EeCCC---CCCCCCHHHHHhcCCCC-----------CHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHH
Q 000674 663 VSQTS---WIQSGSIRDNILYGKPM-----------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1358)
Q Consensus 663 v~Q~~---~~~~~tv~eni~~g~~~-----------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 728 (1358)
|||.. |-|..||+|-+..|... |.++.+++++..++.+..+ ++..+|||||+|||
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~-----------r~i~~LSGGQ~QRV 148 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD-----------RQIGELSGGQKQRV 148 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhC-----------CcccccCcHHHHHH
Confidence 99964 66889999999987432 3467778888888773322 45678999999999
Q ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHh
Q 000674 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1358)
Q Consensus 729 ~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1358)
-|||||+++||+++|||||+|+|+.+++.+++.+.....+|+||++||||++.+.. +|+|+.|+ +++...|++++..+
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~~ 227 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLT 227 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhccC
Confidence 99999999999999999999999999999998776666679999999999998765 89999985 56888999999875
Q ss_pred c
Q 000674 808 A 808 (1358)
Q Consensus 808 ~ 808 (1358)
.
T Consensus 228 ~ 228 (254)
T COG1121 228 E 228 (254)
T ss_pred H
Confidence 4
No 106
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=6.8e-41 Score=366.88 Aligned_cols=201 Identities=26% Similarity=0.414 Sum_probs=177.1
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~i 660 (1358)
.++++|++|+|+. +++++|+||++++||+++|+|||||||||||++|+|.++|.+|+|.++| .+
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 3689999999983 5799999999999999999999999999999999999999999999998 59
Q ss_pred EEEeCCCCC-CCCCHHHHHhcCCC-----------CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHH
Q 000674 661 AYVSQTSWI-QSGSIRDNILYGKP-----------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1358)
Q Consensus 661 ~yv~Q~~~~-~~~tv~eni~~g~~-----------~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 728 (1358)
|||||++.. ++.||+|-+.+|+. .|++...++++.+++.+..+ +...+|||||||||
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~-----------r~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLAD-----------RPVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhc-----------CcccccChhHHHHH
Confidence 999999754 57799999999852 13335566677777765433 45678999999999
Q ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHh-cCCcEEEEEcCCcchhh-ccCeEEEEeCCeEEEecChHHHH
Q 000674 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELL 806 (1358)
Q Consensus 729 ~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 806 (1358)
.|||||+++|+++|||||||+||...+-++++.+.+.. .+|+|+|+|+||++... .||++++|++|+++.+|+++|++
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999998877765 46899999999999865 59999999999999999999987
Q ss_pred hc
Q 000674 807 LA 808 (1358)
Q Consensus 807 ~~ 808 (1358)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 54
No 107
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=3.7e-38 Score=360.50 Aligned_cols=402 Identities=17% Similarity=0.190 Sum_probs=296.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccChhhHHHHHhcCHHHHHhhcHHHHHHHHHHHHH
Q 000674 943 GVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTE 1022 (1358)
Q Consensus 943 ~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~D~~~id~~l~~~l~~~~~~~~~ 1022 (1358)
.+.++.+++..+|+.++.+.+.+.-+++..+.+...+++|..--...+....+ +|.+++..++...-...+...-.
T Consensus 71 ~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW 146 (580)
T COG4618 71 GLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPW 146 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCch
Confidence 34456677888999999999999999999999999988887654333334444 47788877765422221111111
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHH
Q 000674 1023 LLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLK 1102 (1358)
Q Consensus 1023 ~l~~i~v~~~~~~~l~~~~l~~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~G~~tIRAf~~e~~f~~~~~~ 1102 (1358)
.-..+++++.+.|++.++++...++.+.+...-....|+--+..++..+.-..+..-+..+..+|+|.|+.....+++.+
T Consensus 147 ~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~ 226 (580)
T COG4618 147 MPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGR 226 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHH
Confidence 22344556667777776666554444443333333344444444445555667888899999999999998777777665
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000674 1103 LVDIDASLFFHTNGVMEWLILRVEALQ-NLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYI 1181 (1358)
Q Consensus 1103 ~~d~~~~~~~~~~~~~~wl~~~l~~l~-~~~~~~~~~~~~l~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~ 1181 (1358)
....+....-...-.+.-++...-.+- .+-..+.++.++++.+|++|+|.+...--.......|+...+..|.++-.+.
T Consensus 227 ~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar 306 (580)
T COG4618 227 FNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAAR 306 (580)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHH
Confidence 554433322211111111111000000 0112233444567789999999887776677777889999999999999999
Q ss_pred hHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHH
Q 000674 1182 ISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLIS 1261 (1358)
Q Consensus 1182 ~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~ 1261 (1358)
.|..|+.+.++..++.... -..|. .+|.+..+++++.=++...++|+||||+++|||-+|||||||||||||.+
T Consensus 307 ~s~~Rl~~lL~~~p~~~~~---m~LP~---P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR 380 (580)
T COG4618 307 QSYKRLNELLAELPAAAER---MPLPA---PQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLAR 380 (580)
T ss_pred HHHHHHHHHHHhCccccCC---CCCCC---CCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHH
Confidence 9999999999765554321 11221 36999999999966555668999999999999999999999999999999
Q ss_pred HHhcccCCCCCEEEEcCEeCCCCChHHHhhcCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCC
Q 000674 1262 ALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPN 1340 (1358)
Q Consensus 1262 lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~IsiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~ 1340 (1358)
+|.|.+.|.+|+|.+||-|+++.+.++|-++|||.|||-.||+|||++||.-|+ +.++|.|.+|.+.|+.||.|.++|+
T Consensus 381 ~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~ 460 (580)
T COG4618 381 LLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQ 460 (580)
T ss_pred HHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcC
Confidence 999999999999999999999999999999999999999999999999997777 6788889999999999999999999
Q ss_pred ccccccccCCcCCCC
Q 000674 1341 KLDSSEQITYDYGWS 1355 (1358)
Q Consensus 1341 Gldt~v~e~g~~n~s 1355 (1358)
||||.+||+|. +=|
T Consensus 461 GYdT~iG~~G~-~LS 474 (580)
T COG4618 461 GYDTRIGEGGA-TLS 474 (580)
T ss_pred CccCccCCCCC-CCC
Confidence 99999999998 544
No 108
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-40 Score=376.18 Aligned_cols=203 Identities=32% Similarity=0.431 Sum_probs=180.0
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEE
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-----------~i~y 662 (1358)
.|+++|++++|++. .+++|+|++|++||+++++|||||||||||++|+|+.+|++|+|.++| +||+
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iam 79 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM 79 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEE
Confidence 58999999999853 289999999999999999999999999999999999999999999988 4999
Q ss_pred EeCCCCC-CCCCHHHHHhcCCCCC-------HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000674 663 VSQTSWI-QSGSIRDNILYGKPMD-------KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1358)
Q Consensus 663 v~Q~~~~-~~~tv~eni~~g~~~~-------~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal 734 (1358)
|+|+.-+ +++||+|||.||.... +++.+++.+..+++..++ .++.+||||||||||||||+
T Consensus 80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~-----------r~P~~LSGGQrQRVAlaRAl 148 (338)
T COG3839 80 VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLN-----------RKPLQLSGGQRQRVALARAL 148 (338)
T ss_pred EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHh-----------cCcccCChhhHHHHHHHHHH
Confidence 9999876 5789999999996532 457778888888888777 45678999999999999999
Q ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhcCc
Q 000674 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAGT 810 (1358)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1358)
.++|+++|||||+|+||++....+..++.+... -|.|+|+||||..++.. +|||++|++|+|.+.|++.|+.++..
T Consensus 149 Vr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred hcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 999999999999999999999998877765443 37899999999887654 89999999999999999999987643
No 109
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=7.5e-40 Score=344.70 Aligned_cols=204 Identities=27% Similarity=0.412 Sum_probs=176.6
Q ss_pred CCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000674 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1358)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------------- 658 (1358)
...|+++++++++.. +.+++|+||+|++||+++|+||+||||||||++|.|+++|++|+|.++|
T Consensus 6 ~~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 6 EPLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred cceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH
Confidence 467999999999974 5799999999999999999999999999999999999999999999987
Q ss_pred ---eEEEEeCCCCCC-CCCHHHHHhcCC----CCCHHHHH----HHHHHhccHHH-HhcCCCCCCccccCCCCCCChHHH
Q 000674 659 ---SIAYVSQTSWIQ-SGSIRDNILYGK----PMDKARYD----KAIKACALDKD-INNFDHGDLTEIGQRGLNLSGGQK 725 (1358)
Q Consensus 659 ---~i~yv~Q~~~~~-~~tv~eni~~g~----~~~~~~~~----~~~~~~~l~~d-l~~l~~gd~t~ig~~g~~LSGGQk 725 (1358)
++|+++|+.-+| +.||+||+.|.. ..+++.++ .-+++++|..+ .+. .+.+||||++
T Consensus 83 ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~-----------~PsELSGGM~ 151 (263)
T COG1127 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADL-----------YPSELSGGMR 151 (263)
T ss_pred HHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhh-----------CchhhcchHH
Confidence 499999998887 469999999963 24444443 34677888777 454 4568999999
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc--CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecCh
Q 000674 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1358)
Q Consensus 726 qRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1358)
+|++||||+..||+++++||||+||||.++..+ ++++.... -|.|+|+||||++.+.. ||+++++.||+|+..|++
T Consensus 152 KRvaLARAialdPell~~DEPtsGLDPI~a~~~-~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~ 230 (263)
T COG1127 152 KRVALARAIALDPELLFLDEPTSGLDPISAGVI-DELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTP 230 (263)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCcchHHHH-HHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCH
Confidence 999999999999999999999999999998875 55554432 37899999999998876 799999999999999999
Q ss_pred HHHHhcCc
Q 000674 803 QELLLAGT 810 (1358)
Q Consensus 803 ~~l~~~~~ 810 (1358)
+|+.+.+.
T Consensus 231 ~el~~sd~ 238 (263)
T COG1127 231 EELLASDD 238 (263)
T ss_pred HHHHhCCC
Confidence 99987654
No 110
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-40 Score=358.12 Aligned_cols=203 Identities=32% Similarity=0.446 Sum_probs=175.4
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------~ 659 (1358)
.|.++|.+..|+. .++++|||++|+.||++++.|||||||||||++|+|+..|++|.|.++| +
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRK 78 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcc
Confidence 4678888888874 4689999999999999999999999999999999999999999999987 4
Q ss_pred EEEEeCCCCC-CCCCHHHHHhcCCCCC---------HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000674 660 IAYVSQTSWI-QSGSIRDNILYGKPMD---------KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1358)
Q Consensus 660 i~yv~Q~~~~-~~~tv~eni~~g~~~~---------~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 729 (1358)
||||+|+.-+ +.+||.|||.||.+.. +.+..+.++.|.|+.--+ .++..||||||||||
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~-----------ryP~QLSGGQrQRVA 147 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLAD-----------RYPAQLSGGQRQRVA 147 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhh-----------cCchhcChHHHHHHH
Confidence 9999999875 5789999999997322 345566677777654322 567899999999999
Q ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcC-CcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHh
Q 000674 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1358)
Q Consensus 730 LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1358)
||||+..+|++|||||||+|||++..+.+-..+.....+ |.|+++||||.++... ||||++|++|+|.+.|+++|+..
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 999999999999999999999999999987766655444 8899999999998655 89999999999999999999976
Q ss_pred cCc
Q 000674 808 AGT 810 (1358)
Q Consensus 808 ~~~ 810 (1358)
.+.
T Consensus 228 ~P~ 230 (345)
T COG1118 228 HPA 230 (345)
T ss_pred CCC
Confidence 543
No 111
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-40 Score=340.50 Aligned_cols=206 Identities=27% Similarity=0.408 Sum_probs=178.2
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCC-----cEEEEcC---------
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS-----GTVNLYG--------- 658 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~-----G~i~~~g--------- 658 (1358)
..++++|+++.|+. +.+|+|||++|++++++|++||+||||||||+++.+..+..+ |+|.++|
T Consensus 6 ~~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 56899999999984 469999999999999999999999999999999999887765 8998887
Q ss_pred ------eEEEEeCCCCCCCCCHHHHHhcCCCC---C----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHH
Q 000674 659 ------SIAYVSQTSWIQSGSIRDNILYGKPM---D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1358)
Q Consensus 659 ------~i~yv~Q~~~~~~~tv~eni~~g~~~---~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 725 (1358)
+||.|+|.|..|.+||+|||.+|... . ++..++.++.++|.+..+. .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 49999999999999999999998432 1 2455666777777665542 23467888999999
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHH
Q 000674 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1358)
Q Consensus 726 qRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1358)
||++||||+.-+|+|+|||||||||||.+..+| ++++..+.++-|+|+|||+++...+ +|+...+.+|+++|.|+.++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kI-EeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~ 234 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKI-EELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDK 234 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHH-HHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHh
Confidence 999999999999999999999999999999997 4566666678899999999999877 69999999999999999999
Q ss_pred HHhcC
Q 000674 805 LLLAG 809 (1358)
Q Consensus 805 l~~~~ 809 (1358)
+..++
T Consensus 235 iF~~P 239 (253)
T COG1117 235 IFTNP 239 (253)
T ss_pred hhcCc
Confidence 87654
No 112
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=4.8e-40 Score=375.54 Aligned_cols=204 Identities=29% Similarity=0.425 Sum_probs=179.6
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEE
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIA 661 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-----------~i~ 661 (1358)
..++++|++.+|. +..+++|+||+|++||+++++|||||||||+|++|+|+.+|++|+|.++| .|+
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig 80 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIG 80 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccc
Confidence 4689999999998 35799999999999999999999999999999999999999999999998 499
Q ss_pred EEeCCCCC-CCCCHHHHHhcCCCC----C-H---HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000674 662 YVSQTSWI-QSGSIRDNILYGKPM----D-K---ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1358)
Q Consensus 662 yv~Q~~~~-~~~tv~eni~~g~~~----~-~---~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 732 (1358)
+|+|+.-+ +++||.|||.||... . + +++.++++..+|....+ +++.+|||||||||+|||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~-----------R~p~qLSGGQqQRVALAR 149 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFAD-----------RKPHQLSGGQQQRVALAR 149 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhh-----------hChhhhChHHHHHHHHHH
Confidence 99999776 578999999999651 2 2 36667777777765333 677899999999999999
Q ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchh-hccCeEEEEeCCeEEEecChHHHHhcCc
Q 000674 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLAGT 810 (1358)
Q Consensus 733 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1358)
||..+|+++|||||+||||.+.++++-.++..... .|.|.|+||||.+.. ..+|||++|++|+|.+.|+++|+...+.
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~ 229 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPA 229 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcc
Confidence 99999999999999999999999999887776543 489999999999874 5689999999999999999999987653
No 113
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.1e-39 Score=348.44 Aligned_cols=193 Identities=28% Similarity=0.407 Sum_probs=163.5
Q ss_pred EEEEeeEEEeCCCC-CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000674 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1358)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------- 658 (1358)
++++|++..|.... ..++|+++||+|++||+++|+||+||||||||++|.|+..|++|.|.++|
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 56889999887542 24799999999999999999999999999999999999999999999987
Q ss_pred --eEEEEeCCCC-CCCCCHHHHHhcCC----CCC---HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHH
Q 000674 659 --SIAYVSQTSW-IQSGSIRDNILYGK----PMD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1358)
Q Consensus 659 --~i~yv~Q~~~-~~~~tv~eni~~g~----~~~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 728 (1358)
+||||+|+.. +++.|++|||.++. ... .++.++.++..++.+... ..++.+|||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHHHH
Confidence 3999999976 57889999998532 111 334445555555554333 145789999999999
Q ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhccCeEEEEeCCeEE
Q 000674 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQIT 797 (1358)
Q Consensus 729 ~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~ 797 (1358)
|+|||++.+|++++.||||.+||.++++.+++.+..... .|+|+|+||||.+....|||++.|+||++.
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 999999999999999999999999999999987766544 489999999999999999999999999954
No 114
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=4.8e-39 Score=400.92 Aligned_cols=179 Identities=23% Similarity=0.335 Sum_probs=147.9
Q ss_pred eeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEE-----------EcC---------
Q 000674 599 EGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN-----------LYG--------- 658 (1358)
Q Consensus 599 ~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~-----------~~g--------- 658 (1358)
+.+++|+.+ ..+|++++ ++++||+++|+||||||||||+++|+|+++|++|+|. ++|
T Consensus 78 ~~~~~yg~~--~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 78 EPVHRYGVN--GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred CceEEecCC--ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence 478888742 36899999 9999999999999999999999999999999999996 544
Q ss_pred ------eEEEEeC----CCCCCCCCHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHH
Q 000674 659 ------SIAYVSQ----TSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1358)
Q Consensus 659 ------~i~yv~Q----~~~~~~~tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 728 (1358)
+++|.+| .|.++.+|++||+.... ..++.+++++..++....+ .+..+||||||||+
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~--~~~~~~~~l~~l~l~~~~~-----------~~~~~LSgGe~qrv 221 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD--ERGKLDEVVERLGLENILD-----------RDISELSGGELQRV 221 (590)
T ss_pred HhccCcceeecccchhhhhhhhcchHHHHHHhhh--HHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHH
Confidence 2455555 56667789999997521 2345666777766654332 56678999999999
Q ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCC
Q 000674 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGG 794 (1358)
Q Consensus 729 ~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G 794 (1358)
+||||++++|++|+||||||+||++...++++.+..... |+|+|+|||+++.+.. +|+|++|++|
T Consensus 222 ~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 222 AIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999886655545 8999999999999976 8999999753
No 115
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.5e-38 Score=362.55 Aligned_cols=219 Identities=41% Similarity=0.710 Sum_probs=196.1
Q ss_pred cCCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCCC
Q 000674 589 QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSW 668 (1358)
Q Consensus 589 ~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g~i~yv~Q~~~ 668 (1358)
+.....++++|+++.+ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++|++|+++
T Consensus 34 ~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~ 108 (282)
T cd03291 34 SSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSW 108 (282)
T ss_pred CCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCccc
Confidence 3456679999999962 35999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCC
Q 000674 669 IQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFS 748 (1358)
Q Consensus 669 ~~~~tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep~s 748 (1358)
+++.|++||+.++......++.+.++++++.+.++.++.+..+.+++++.+||||||||++||||++++|+++||||||+
T Consensus 109 l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~ 188 (282)
T cd03291 109 IMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFG 188 (282)
T ss_pred ccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 98899999999876555556677788888988899999998888889999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHHhcCchH
Q 000674 749 AVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812 (1358)
Q Consensus 749 ~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 812 (1358)
+||+.+.+.+.+.++....+++|+|++||+++.+..||++++|++|++++.|+++++......+
T Consensus 189 gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~ 252 (282)
T cd03291 189 YLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDF 252 (282)
T ss_pred cCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhcchHH
Confidence 9999999988876654444678999999999999889999999999999999999987644333
No 116
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.2e-38 Score=357.76 Aligned_cols=219 Identities=31% Similarity=0.469 Sum_probs=192.1
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~i~ 661 (1358)
++++|+++.|+.. ..++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4689999999643 25699999999999999999999999999999999999999999999987 389
Q ss_pred EEeCCCCCCCCCHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000674 662 YVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1358)
Q Consensus 662 yv~Q~~~~~~~tv~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~i 740 (1358)
|++|++++++.|++||+.++.. ...++..+.++..++.+.++.+|.|..+..++++.+|||||||||+||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 9999999988999999998653 334455556666778888888888877778889999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHHhcCchHHHH
Q 000674 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815 (1358)
Q Consensus 741 llLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 815 (1358)
+||||||++||+.+.+.+.+.+... .+|+|+|++||+++.+..||++++|++|++++.|+++++..+.+.+..+
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 233 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDI-CAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYL 233 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHH
Confidence 9999999999999999988766554 3589999999999999889999999999999999999988766555443
No 117
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=7.9e-39 Score=350.68 Aligned_cols=201 Identities=56% Similarity=0.983 Sum_probs=183.2
Q ss_pred EEEEeeEEEeCCCCC--CccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCCCCCCC
Q 000674 595 VKIQEGNFSWDPELA--IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~--~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g~i~yv~Q~~~~~~~ 672 (1358)
++++|+++.|++... .++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+|+|++|+|.+++.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~ 80 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNG 80 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccC
Confidence 468999999975321 369999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Q 000674 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752 (1358)
Q Consensus 673 tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~ 752 (1358)
|++||+.++..++.++..++.+.+++.+.+..+|.|..+.+++++.+||||||||++||||++++|++++|||||++||+
T Consensus 81 t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~ 160 (204)
T cd03250 81 TIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDA 160 (204)
T ss_pred cHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 99999999876666677788888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhH-hcCCcEEEEEcCCcchhhccCeEEEEeCCe
Q 000674 753 HTAATLFNECVMA-ALEKKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1358)
Q Consensus 753 ~~~~~i~~~~~~~-~~~~~tvilvtH~~~~l~~~d~i~~l~~G~ 795 (1358)
+..+.+++.++.. ..+++|+|++||+++.+..+|++++|++|+
T Consensus 161 ~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 161 HVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999988766543 345799999999999988899999999985
No 118
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-39 Score=339.85 Aligned_cols=200 Identities=30% Similarity=0.445 Sum_probs=173.0
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------- 658 (1358)
.|+++|++..|+. ++.+|+||||+|++||+++|+|++||||||||++|.|..+|++|+|.++|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 5899999999984 46799999999999999999999999999999999999999999999987
Q ss_pred -eEEEEeCCCCC-CCCCHHHHHhcCCC------------CCHHHHH---HHHHHhccHHHHhcCCCCCCccccCCCCCCC
Q 000674 659 -SIAYVSQTSWI-QSGSIRDNILYGKP------------MDKARYD---KAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1358)
Q Consensus 659 -~i~yv~Q~~~~-~~~tv~eni~~g~~------------~~~~~~~---~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 721 (1358)
+|||++|++.+ +..||.+|++.|+- +.++... ++++..++.+..- .+..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-----------qra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-----------QRASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-----------HHhccCC
Confidence 49999999875 67899999987742 2233333 3444444444332 5678999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHh-cCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEe
Q 000674 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQS 799 (1358)
Q Consensus 722 GGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~ 799 (1358)
|||+|||+|||||+++|+++|-|||+++|||.+++++++.+.+.. ..|.|+|+.-|++++..+ ||||+-|++|+|+++
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999998877654 468999999999999865 999999999999999
Q ss_pred cChHHHH
Q 000674 800 GNYQELL 806 (1358)
Q Consensus 800 g~~~~l~ 806 (1358)
|+.+|+.
T Consensus 230 g~~~el~ 236 (258)
T COG3638 230 GPASELT 236 (258)
T ss_pred CChhhhh
Confidence 9999964
No 119
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=7.1e-39 Score=321.25 Aligned_cols=199 Identities=29% Similarity=0.435 Sum_probs=174.0
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-----------~i~yv 663 (1358)
+.++++.|+|.... -..+++|+.||+++|+||+||||||||+.|+|+..|.+|+|.++| .++.+
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSml 76 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhh
Confidence 46778999997532 367899999999999999999999999999999999999999998 39999
Q ss_pred eCCCCCC-CCCHHHHHhcCCC-------CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHh
Q 000674 664 SQTSWIQ-SGSIRDNILYGKP-------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1358)
Q Consensus 664 ~Q~~~~~-~~tv~eni~~g~~-------~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~ 735 (1358)
+|+..+| ..||.+||.+|.. .+.++.+.+....+|...++++|. +|||||||||+|||++.
T Consensus 77 FQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARclv 145 (231)
T COG3840 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCLV 145 (231)
T ss_pred hhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHHh
Confidence 9999887 5699999999853 245677778888899888887764 79999999999999999
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhHh-cCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhcC
Q 000674 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1358)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1358)
++.+|+|||||||||||.-..++...+.+.. .++.|+++|||+++.+.. +|+++++++|+|.++|+.+++....
T Consensus 146 R~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 146 REQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred ccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence 9999999999999999999998876555443 467899999999999876 8999999999999999999987543
No 120
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-37 Score=367.19 Aligned_cols=197 Identities=25% Similarity=0.357 Sum_probs=166.2
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe-------------
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g~------------- 659 (1358)
.-++++|++++|+. .++|+|+||++.+||+++++|.||+|||||+|+|.|.++|++|+|.++|+
T Consensus 7 ~ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~ 83 (500)
T COG1129 7 PLLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83 (500)
T ss_pred ceeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhC
Confidence 35789999999984 57999999999999999999999999999999999999999999999983
Q ss_pred -EEEEeCCCCC-CCCCHHHHHhcCCCC-------CHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000674 660 -IAYVSQTSWI-QSGSIRDNILYGKPM-------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1358)
Q Consensus 660 -i~yv~Q~~~~-~~~tv~eni~~g~~~-------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 730 (1358)
|+.|.|+..+ ++.||.|||-+|++. |..+.++..++ .++.+..... ...+..+||+||||-|+|
T Consensus 84 GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~-----~l~~lg~~~~--~~~~v~~LsiaqrQ~VeI 156 (500)
T COG1129 84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARE-----LLARLGLDID--PDTLVGDLSIAQRQMVEI 156 (500)
T ss_pred CcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHH-----HHHHcCCCCC--hhhhhhhCCHHHHHHHHH
Confidence 9999999875 789999999888642 32333221111 1222211111 335677899999999999
Q ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEe
Q 000674 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQS 799 (1358)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~ 799 (1358)
|||+..++++++||||||+|+.+..+++|+.+.+...+|.++|+|||+++.+.. ||||.||+||+.+..
T Consensus 157 ArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~ 226 (500)
T COG1129 157 ARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGT 226 (500)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeee
Confidence 999999999999999999999999999999887778899999999999999876 899999999998854
No 121
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-38 Score=349.24 Aligned_cols=202 Identities=28% Similarity=0.482 Sum_probs=180.0
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------~ 659 (1358)
.++++|++|+|+++ .++|+|+|+++++||.++|+|+||||||||++++.|+++|++|.|.++| +
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 47899999999875 5799999999999999999999999999999999999999999998876 3
Q ss_pred EEEEeCCC--CCCCCCHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000674 660 IAYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1358)
Q Consensus 660 i~yv~Q~~--~~~~~tv~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 730 (1358)
||||+|+| .++..||.|.+.||.. .. +++..++++.|++....+ +.+.+|||||||||+|
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~-----------r~p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLD-----------RPPFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhcc-----------CCccccCCcceeeHHh
Confidence 99999999 4789999999999853 33 346667788888876644 4567999999999999
Q ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcC-CcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhc
Q 000674 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1358)
|.+|..+|++++||||||+||+...+.+.+.+.+...+ |+|+|++|||++.+.. ||++++|++|+++.+|+++++.++
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 99999999999999999999999999998877666555 6899999999999877 999999999999999999888754
No 122
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=4.5e-38 Score=353.23 Aligned_cols=215 Identities=32% Similarity=0.503 Sum_probs=189.7
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~i~ 661 (1358)
++++|+++.|+...+.++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4689999999753335799999999999999999999999999999999999999999999877 399
Q ss_pred EEeCCCCCCCCCHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000674 662 YVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1358)
Q Consensus 662 yv~Q~~~~~~~tv~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~i 740 (1358)
|++|++.+++.|++||+.++.. ...++..+.++.+++.+.++.+|.|..+..+.++.+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999888899999998753 234455666777788888888888888888888999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHHhcCc
Q 000674 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGT 810 (1358)
Q Consensus 741 llLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1358)
+||||||++||++..+.+.+.+.... +|+|+|++||+++.+..||++++|++|++++.|+.+++.....
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 229 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKG 229 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcCh
Confidence 99999999999999999887665544 7899999999999988899999999999999999888865443
No 123
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=2.4e-37 Score=355.62 Aligned_cols=192 Identities=27% Similarity=0.421 Sum_probs=171.1
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe-------------
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g~------------- 659 (1358)
..+++++.++.|+ ...+.+||||+|++||+.|++|.||+|||||+++|.|.++|++|+|.++|+
T Consensus 3 ~~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~ 79 (501)
T COG3845 3 PALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79 (501)
T ss_pred ceEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHc
Confidence 4689999999998 357899999999999999999999999999999999999999999999984
Q ss_pred -EEEEeCCCCC-CCCCHHHHHhcCCCC------C----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000674 660 -IAYVSQTSWI-QSGSIRDNILYGKPM------D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1358)
Q Consensus 660 -i~yv~Q~~~~-~~~tv~eni~~g~~~------~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 727 (1358)
||.|.|++-+ .+.||.|||..|.+- + .++.++..+.+++.-|.+ ++...||=|||||
T Consensus 80 GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~-----------~~V~dLsVG~qQR 148 (501)
T COG3845 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPD-----------AKVADLSVGEQQR 148 (501)
T ss_pred CCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcc-----------ceeecCCcchhHH
Confidence 9999999876 678999999998752 2 345556666666665554 5677899999999
Q ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEE
Q 000674 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1358)
Q Consensus 728 v~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1358)
|.|-+|||++|+++|||||||-|-|...+++|+.+.+...+|+|||++||.++.+.. ||++-||.+|+++.
T Consensus 149 VEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg 220 (501)
T COG3845 149 VEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG 220 (501)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe
Confidence 999999999999999999999999999999999888778899999999999999876 89999999999863
No 124
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-38 Score=334.64 Aligned_cols=205 Identities=25% Similarity=0.405 Sum_probs=177.1
Q ss_pred cEEEEeeEEEeCCCC-CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000674 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------- 658 (1358)
.++++|.++.|+... ..++++||||++.+||.++|+|++|||||||.++|+|+.+|++|+|.++|
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 578999999998542 12599999999999999999999999999999999999999999999988
Q ss_pred eEEEEeCCCC---CCCCCHHHHHhcCCC-----CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000674 659 SIAYVSQTSW---IQSGSIRDNILYGKP-----MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1358)
Q Consensus 659 ~i~yv~Q~~~---~~~~tv~eni~~g~~-----~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 730 (1358)
.|-+|+|+|. -+..||++-|.-+.. ..+++..++++..+|.+.... +++.+|||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~----------R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLD----------RRPHELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHh----------cCchhcChhHHHHHHH
Confidence 3899999985 255699988864422 234567788888888765432 5678899999999999
Q ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhc
Q 000674 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1358)
||||..+|+++|+|||||+||+.+...|++.+..... .+-|.|+||||+..+.+ ||||+||++|+++|.++.+++...
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 9999999999999999999999999999987765443 47799999999999987 999999999999999999998766
No 125
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.1e-38 Score=349.64 Aligned_cols=212 Identities=30% Similarity=0.501 Sum_probs=190.1
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~i 660 (1358)
.++++|++++|+.+ .++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCCC--CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 57899999999632 3699999999999999999999999999999999999999999999876 38
Q ss_pred EEEeCCCCCCCCCHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 000674 661 AYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1358)
Q Consensus 661 ~yv~Q~~~~~~~tv~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~ 739 (1358)
+|++|++++++.|++||+.++.+ ...++..+.++.+++...++.+|.|..+..+.+..+|||||||||+||||++++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999888899999998754 34456677788888988899999888888889999999999999999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHHhc
Q 000674 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 740 illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1358)
++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+..||++++|++|++.+.|+++++.++
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKL-MKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 99999999999999999988766544 468999999999999888999999999999999998887643
No 126
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.5e-38 Score=349.77 Aligned_cols=214 Identities=32% Similarity=0.540 Sum_probs=189.8
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~i~ 661 (1358)
++++|++++|+.. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4689999999743 23699999999999999999999999999999999999999999999876 389
Q ss_pred EEeCCCCCCCCCHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000674 662 YVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1358)
Q Consensus 662 yv~Q~~~~~~~tv~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~i 740 (1358)
|++|++++++.|++||+.++.. ...+.+.+.++.+.+.+.++.++.|..+..+.++.+||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999988999999998753 345566677777888888999988888888889999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHHhcCc
Q 000674 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGT 810 (1358)
Q Consensus 741 llLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1358)
+||||||++||+.+.+.+.+.+... .+++|+|++||+++.+..||++++|++|++++.|+++++.....
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 228 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERL-MKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGG 228 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCc
Confidence 9999999999999999987765544 46899999999999998899999999999999999988865543
No 127
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-37 Score=349.05 Aligned_cols=215 Identities=33% Similarity=0.554 Sum_probs=190.4
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~i~ 661 (1358)
++++|++++|+.+ .++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4689999999632 4689999999999999999999999999999999999999999999977 289
Q ss_pred EEeCCCCCCCCCHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000674 662 YVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1358)
Q Consensus 662 yv~Q~~~~~~~tv~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~i 740 (1358)
|++|++++++.|++||+.++.. ...+...+.++.+++.+.++.++.|..+.++.++.+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998753 334455667778888888899999988888899999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHHhcCchH
Q 000674 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812 (1358)
Q Consensus 741 llLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 812 (1358)
+||||||++||+++.+.+.+.+..... |+|+|++||+.+.+..||++++|++|++.+.|+.+++......+
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~ 229 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLY 229 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHH
Confidence 999999999999999998876655444 89999999999999889999999999999999998887654433
No 128
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.1e-38 Score=321.06 Aligned_cols=193 Identities=24% Similarity=0.399 Sum_probs=173.1
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g---------------- 658 (1358)
|+|+|++..|+.. .++|+|+||+|++||++.++||+|||||||+++|.++.+|++|+|.++|
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7899999999875 5799999999999999999999999999999999999999999999987
Q ss_pred eEEEEeCCCC-CCCCCHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000674 659 SIAYVSQTSW-IQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1358)
Q Consensus 659 ~i~yv~Q~~~-~~~~tv~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 730 (1358)
+||+|+|+.- +++.||.||+.|... .. +++..++++..+|......+|. .|||||||||+|
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHH
Confidence 5999999976 578899999999743 22 3566678888899888887764 799999999999
Q ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhcc-CeEEEEeCCeEEEec
Q 000674 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSG 800 (1358)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~-d~i~~l~~G~i~~~g 800 (1358)
|||+.++|+++|.||||.+|||..+..|++........|.||+++|||.+.+... -+++.+++|+++...
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 9999999999999999999999999999987666677899999999999999885 799999999998653
No 129
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.5e-37 Score=352.63 Aligned_cols=216 Identities=27% Similarity=0.388 Sum_probs=193.7
Q ss_pred CCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000674 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1358)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------------- 658 (1358)
.+.++++|++++|+.. ..++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 17 ~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 17 GGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 4579999999999753 24699999999999999999999999999999999999999999999876
Q ss_pred eEEEEeCCCCCCCCCHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000674 659 SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1358)
Q Consensus 659 ~i~yv~Q~~~~~~~tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~ 738 (1358)
.++|++|+|++++.|++||+........+++.++++..++.+.++.+|.|.++.+++++.+||||||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 38999999999999999999765444456677788888899999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHHhcC
Q 000674 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1358)
Q Consensus 739 ~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1358)
++++|||||++||+++.+.+++.+.. ..+++|+|++||+++.+..||+|++|++|++++.|+++++.+..
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~-~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 245 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMT-AFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQE 245 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHH-hcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhcc
Confidence 99999999999999998887765543 44689999999999999889999999999999999999987653
No 130
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=3.7e-38 Score=367.52 Aligned_cols=203 Identities=25% Similarity=0.351 Sum_probs=172.7
Q ss_pred EEEEeeEEEeCCCC-CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000674 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1358)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------- 658 (1358)
|+++|++++|+... ..++|+|+||++++||+++|+|+||||||||+++|.|+.+|++|+|.++|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996422 34799999999999999999999999999999999999999999999876
Q ss_pred -eEEEEeCCCCCC-CCCHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000674 659 -SIAYVSQTSWIQ-SGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1358)
Q Consensus 659 -~i~yv~Q~~~~~-~~tv~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 729 (1358)
+|+|++|++.++ +.|++||+.++.. .+. ++..+.++..++.+.. ...+.+|||||||||+
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~-----------~~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKH-----------DSYPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHHH
Confidence 389999999876 5799999998632 222 2334455555554322 2567899999999999
Q ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcC-CcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHh
Q 000674 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1358)
Q Consensus 730 LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1358)
||||++.+|+++|||||||+||+.+.+.+.+.+.....+ |.|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 999999999999999999999999999998776655443 8999999999999876 89999999999999999999975
Q ss_pred c
Q 000674 808 A 808 (1358)
Q Consensus 808 ~ 808 (1358)
.
T Consensus 231 ~ 231 (343)
T TIGR02314 231 H 231 (343)
T ss_pred C
Confidence 4
No 131
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-38 Score=369.01 Aligned_cols=203 Identities=31% Similarity=0.449 Sum_probs=175.2
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEE
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-----------~i~y 662 (1358)
.++++|++++|+. +.++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++| .|||
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAM 80 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 3789999999942 24699999999999999999999999999999999999999999999987 3999
Q ss_pred EeCCCCCC-CCCHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000674 663 VSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1358)
Q Consensus 663 v~Q~~~~~-~~tv~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal 734 (1358)
|+|++.++ +.||+|||.|+.. .+ .++..++++..++....+ .++.+|||||||||+||||+
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~QRvalARAL 149 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLD-----------RKPRELSGGQRQRVAMGRAI 149 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhh-----------CChhhCCHHHHHHHHHHHHH
Confidence 99999876 6799999998743 22 234456666666654433 55678999999999999999
Q ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcC-CcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhcC
Q 000674 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1358)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1358)
+.+|+++|||||||+||+.+.+++.+.+.....+ |.|+|+||||.+.+.. ||+|++|++|++++.|+++++.++.
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 9999999999999999999999998877654443 8999999999998765 8999999999999999999997654
No 132
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.7e-37 Score=344.54 Aligned_cols=206 Identities=28% Similarity=0.436 Sum_probs=186.9
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~i 660 (1358)
.++++|++++|+.. .+++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 47899999999743 24699999999999999999999999999999999999999999999876 38
Q ss_pred EEEeCCCCCCCCCHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000674 661 AYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1358)
Q Consensus 661 ~yv~Q~~~~~~~tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~i 740 (1358)
+|++|++.+++.|++||+.+......++..+.++..++.+.+..++.|..+..++++.+||||||||++||||++.+|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999988999999987655666777788888999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecC
Q 000674 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1358)
Q Consensus 741 llLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 801 (1358)
+||||||++||+.+.+.+.+.+... .+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREA-FKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 9999999999999999987765543 45689999999999998899999999999998775
No 133
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-37 Score=364.25 Aligned_cols=203 Identities=27% Similarity=0.344 Sum_probs=173.7
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEE
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIA 661 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-----------~i~ 661 (1358)
..++++|++++|+. .++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++| +++
T Consensus 5 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 81 (351)
T PRK11432 5 NFVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDIC 81 (351)
T ss_pred cEEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 36899999999963 4689999999999999999999999999999999999999999999987 489
Q ss_pred EEeCCCCCC-CCCHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHH
Q 000674 662 YVSQTSWIQ-SGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1358)
Q Consensus 662 yv~Q~~~~~-~~tv~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARa 733 (1358)
||+|++.++ +.||+|||.|+.. .++ ++.+++++..++.... ..++.+|||||||||+||||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~-----------~r~~~~LSgGq~QRVaLARa 150 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFE-----------DRYVDQISGGQQQRVALARA 150 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHHH
Confidence 999999876 5799999999743 222 2344455555554322 25678999999999999999
Q ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhcC
Q 000674 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1358)
Q Consensus 734 l~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1358)
++.+|+++|||||||+||+...+.+.+.+..... .|+|+|+||||.+.+.. ||+|++|++|++.+.|+++++....
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p 228 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999998877655443 38999999999998755 8999999999999999999997654
No 134
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-37 Score=360.33 Aligned_cols=208 Identities=23% Similarity=0.389 Sum_probs=173.7
Q ss_pred CCCcEEEEeeEEEeCCCC--CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------
Q 000674 591 SDRSVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------- 658 (1358)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~--~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g---------- 658 (1358)
.+..++++|++|+|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 345689999999997432 24699999999999999999999999999999999999999999998864
Q ss_pred -------------------eEEEEeCCC--CCCCCCHHHHHhcCCC---CCHH----HHHHHHHHhccHHHHhcCCCCCC
Q 000674 659 -------------------SIAYVSQTS--WIQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDL 710 (1358)
Q Consensus 659 -------------------~i~yv~Q~~--~~~~~tv~eni~~g~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~ 710 (1358)
.++||+|+| .+++.|++|||.|+.. .+.+ +..+.++.+++..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------- 168 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDS--------- 168 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChh---------
Confidence 279999998 6788899999998732 2222 22333444443211
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhh-ccCeEE
Q 000674 711 TEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRIL 789 (1358)
Q Consensus 711 t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~ 789 (1358)
..++++.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.....+|+|+|+|||+++.+. .||+|+
T Consensus 169 -~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~ 247 (320)
T PRK13631 169 -YLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVI 247 (320)
T ss_pred -HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE
Confidence 234678899999999999999999999999999999999999999998776555456899999999999875 599999
Q ss_pred EEeCCeEEEecChHHHHhc
Q 000674 790 VLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 790 ~l~~G~i~~~g~~~~l~~~ 808 (1358)
+|++|++++.|+++++...
T Consensus 248 vl~~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 248 VMDKGKILKTGTPYEIFTD 266 (320)
T ss_pred EEECCEEEEeCCHHHHhcC
Confidence 9999999999999998754
No 135
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-37 Score=348.36 Aligned_cols=199 Identities=27% Similarity=0.384 Sum_probs=167.5
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g---------------- 658 (1358)
++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 468999999963 4699999999999999999999999999999999999999999998866
Q ss_pred eEEEEeCCCCCCC-CCHHHHHhcCCC----CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000674 659 SIAYVSQTSWIQS-GSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1358)
Q Consensus 659 ~i~yv~Q~~~~~~-~tv~eni~~g~~----~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 729 (1358)
.++|++|++.++. .|++||+.++.. .+. ++..++++.+++.... ..+..+|||||||||+
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE-----------DLYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHH
Confidence 2899999987765 599999987522 222 2234445555443322 3566789999999999
Q ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHh
Q 000674 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1358)
Q Consensus 730 LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1358)
||||++++|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999998877655444 48999999999998876 89999999999999999988764
No 136
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=3.9e-37 Score=341.46 Aligned_cols=205 Identities=38% Similarity=0.598 Sum_probs=182.5
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~i 660 (1358)
.++++|+++.|+.. ..++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 47899999999642 24699999999999999999999999999999999999999999999877 38
Q ss_pred EEEeCCCCCCCCCHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 000674 661 AYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1358)
Q Consensus 661 ~yv~Q~~~~~~~tv~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~ 739 (1358)
+|++|+++++..|++||+.++.. .++++..+.++.+++.+.++..|.|..|.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999888899999988643 34556777888889988889999999898888899999999999999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEec
Q 000674 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800 (1358)
Q Consensus 740 illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g 800 (1358)
++||||||++||+.+.+.+++.+.... +++|+|++||+++.+..||++++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999887665543 348999999999988779999999999998654
No 137
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=2.2e-37 Score=363.79 Aligned_cols=202 Identities=30% Similarity=0.389 Sum_probs=174.2
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEE
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-----------~i~y 662 (1358)
.++++|++++|+. .++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++| .++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~ 80 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGI 80 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 4899999999973 4589999999999999999999999999999999999999999999987 3999
Q ss_pred EeCCCCCC-CCCHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000674 663 VSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1358)
Q Consensus 663 v~Q~~~~~-~~tv~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal 734 (1358)
|+|++.++ +.||+|||.|+.. .+ .++.+++++..++...+ ..++.+|||||||||+|||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~-----------~~~~~~LSgGq~QRvaLARaL 149 (353)
T TIGR03265 81 VFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSE-----------RKYPGQLSGGQQQRVALARAL 149 (353)
T ss_pred EeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchh-----------hCChhhCCHHHHHHHHHHHHH
Confidence 99999876 5799999998742 22 23444555555554332 256789999999999999999
Q ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhcC
Q 000674 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1358)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1358)
+.+|+++|||||||+||+...+++.+.+..... .|.|+|+||||.+.+.. ||+|++|++|++++.|+++++.++.
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 150 ATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 999999999999999999999999877765544 38999999999998765 8999999999999999999998754
No 138
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=1.4e-37 Score=364.42 Aligned_cols=189 Identities=26% Similarity=0.361 Sum_probs=163.3
Q ss_pred CccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------eEEEEeCCCCCCC-
Q 000674 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIAYVSQTSWIQS- 671 (1358)
Q Consensus 610 ~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-----------------~i~yv~Q~~~~~~- 671 (1358)
+++++|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++| +++||+|++++++
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 4689999999999999999999999999999999999999999999877 4999999999875
Q ss_pred CCHHHHHhcCCCC---CH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEc
Q 000674 672 GSIRDNILYGKPM---DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744 (1358)
Q Consensus 672 ~tv~eni~~g~~~---~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLD 744 (1358)
.||+|||.|+..+ +. ++..++++..+|... .++++.+|||||||||+||||++++|+++|||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~-----------~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEY-----------EHRYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchh-----------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 6999999986432 22 233444555555432 34677899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhcC
Q 000674 745 DPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1358)
Q Consensus 745 ep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1358)
|||||||+.+.+++++.+..... .++|+|+||||++++.. ||+|++|++|++++.|+++++..+.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p 221 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNP 221 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCc
Confidence 99999999999999988776544 48999999999998755 8999999999999999999998654
No 139
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-37 Score=354.85 Aligned_cols=204 Identities=22% Similarity=0.402 Sum_probs=172.6
Q ss_pred EEEEeeEEEeCCCCC--CccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000674 595 VKIQEGNFSWDPELA--IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~--~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------- 658 (1358)
|+++|++|+|+.+.. +++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 689999999974321 3699999999999999999999999999999999999999999999876
Q ss_pred ---eEEEEeCCC--CCCCCCHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHH
Q 000674 659 ---SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1358)
Q Consensus 659 ---~i~yv~Q~~--~~~~~tv~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 726 (1358)
.++||+|+| .+++.|+.||+.|+.. ... +++.++++..++..++ .++.+.+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEF----------WEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhh----------ccCCcccCCHHHHH
Confidence 279999998 6778899999998742 222 2445555555554322 13567899999999
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHH
Q 000674 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1358)
Q Consensus 727 Rv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1358)
|++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999887665444468999999999999865 999999999999999999998
Q ss_pred Hhc
Q 000674 806 LLA 808 (1358)
Q Consensus 806 ~~~ 808 (1358)
...
T Consensus 232 ~~~ 234 (288)
T PRK13643 232 FQE 234 (288)
T ss_pred HcC
Confidence 653
No 140
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-37 Score=354.74 Aligned_cols=204 Identities=23% Similarity=0.375 Sum_probs=173.2
Q ss_pred EEEEeeEEEeCCCC--CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000674 595 VKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1358)
Q Consensus 595 i~~~~~~f~~~~~~--~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------- 658 (1358)
++++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997432 14699999999999999999999999999999999999999999998876
Q ss_pred ---eEEEEeCCC--CCCCCCHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHH
Q 000674 659 ---SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1358)
Q Consensus 659 ---~i~yv~Q~~--~~~~~tv~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 726 (1358)
.++||+|+| .+++.|++|||.|+.. .+. ++.+++++.++|..++. ..++.+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----------~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL----------ARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh----------hCCcccCCHHHHH
Confidence 289999998 5778899999998632 222 34556666666653332 2567789999999
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHH
Q 000674 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1358)
Q Consensus 727 Rv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1358)
|++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999998876655444 48999999999999865 89999999999999999998
Q ss_pred HHhc
Q 000674 805 LLLA 808 (1358)
Q Consensus 805 l~~~ 808 (1358)
+.+.
T Consensus 233 ~~~~ 236 (290)
T PRK13634 233 IFAD 236 (290)
T ss_pred HhcC
Confidence 8654
No 141
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-37 Score=352.82 Aligned_cols=204 Identities=25% Similarity=0.379 Sum_probs=174.5
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~i 660 (1358)
.++++|++++|+.....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| ++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48899999999753234699999999999999999999999999999999999999999999887 38
Q ss_pred EEEeCCCC--CCCCCHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000674 661 AYVSQTSW--IQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1358)
Q Consensus 661 ~yv~Q~~~--~~~~tv~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 731 (1358)
+|++|+|. ++..||+|||.|+.. .++ ++..++++..++....+ ..+.+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKE-----------REPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHHHHHH
Confidence 99999984 567899999998732 222 34556667777754433 45678999999999999
Q ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHHhc
Q 000674 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1358)
||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999998876655544 38999999999999877999999999999999999988654
No 142
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=4.6e-37 Score=362.54 Aligned_cols=204 Identities=28% Similarity=0.375 Sum_probs=175.2
Q ss_pred CCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eE
Q 000674 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SI 660 (1358)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-----------~i 660 (1358)
...++++|++++|+. .++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++| .+
T Consensus 12 ~~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~i 88 (375)
T PRK09452 12 SPLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHV 88 (375)
T ss_pred CceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 345899999999973 4689999999999999999999999999999999999999999999987 39
Q ss_pred EEEeCCCCCC-CCCHHHHHhcCCCC---CH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000674 661 AYVSQTSWIQ-SGSIRDNILYGKPM---DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1358)
Q Consensus 661 ~yv~Q~~~~~-~~tv~eni~~g~~~---~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 732 (1358)
+||+|++.++ +.||+|||.|+... .. ++.+++++..++...++ .++.+|||||||||+|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~p~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQ-----------RKPHQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHHHHH
Confidence 9999998776 67999999997432 22 23455566666654433 456789999999999999
Q ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhcC
Q 000674 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1358)
Q Consensus 733 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1358)
||+.+|+++|||||||+||++..+.+.+.+..... .|.|+|+||||.+.+.. +|+|++|++|+|.+.|+++++..+.
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999998877665544 48999999999998754 9999999999999999999998764
No 143
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-37 Score=353.55 Aligned_cols=206 Identities=26% Similarity=0.412 Sum_probs=172.2
Q ss_pred cEEEEeeEEEeCCCC--CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000674 594 SVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~--~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------------- 658 (1358)
.++++|++++|+... .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 378999999997432 14699999999999999999999999999999999999999999998876
Q ss_pred --eEEEEeCCC--CCCCCCHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000674 659 --SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1358)
Q Consensus 659 --~i~yv~Q~~--~~~~~tv~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 727 (1358)
+++|++|+| .+++.|++||+.|+.. .+. ++..++++.+++.. .+....++.+||||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgGq~qr 152 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGGQKRR 152 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHHHHHH
Confidence 389999998 4678899999998632 232 23445555555531 011236678999999999
Q ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHH
Q 000674 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1358)
Q Consensus 728 v~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1358)
++||||++.+|+++||||||++||+.+.+++.+.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~ 232 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999876655444 38999999999999864 999999999999999999988
Q ss_pred Hhc
Q 000674 806 LLA 808 (1358)
Q Consensus 806 ~~~ 808 (1358)
.+.
T Consensus 233 ~~~ 235 (287)
T PRK13637 233 FKE 235 (287)
T ss_pred HhC
Confidence 653
No 144
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=4.2e-37 Score=361.69 Aligned_cols=203 Identities=28% Similarity=0.420 Sum_probs=174.5
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCC--cEEEEcC-----------e
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS--GTVNLYG-----------S 659 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~--G~i~~~g-----------~ 659 (1358)
+.++++|++++|+. ..+|+|+||++++||+++|+|||||||||||++|+|+.+|++ |+|.++| .
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ 80 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRG 80 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCC
Confidence 46899999999974 369999999999999999999999999999999999999999 9999987 3
Q ss_pred EEEEeCCCCCC-CCCHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000674 660 IAYVSQTSWIQ-SGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1358)
Q Consensus 660 i~yv~Q~~~~~-~~tv~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 731 (1358)
|+||+|++.++ +.||+|||.|+.. ... ++.+++++..+|.... .+++.+|||||||||+||
T Consensus 81 ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~-----------~~~~~~LSgGq~QRvaLA 149 (362)
T TIGR03258 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAA-----------AHLPAQLSGGMQQRIAIA 149 (362)
T ss_pred EEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchh-----------hCChhhCCHHHHHHHHHH
Confidence 89999999876 5699999998642 221 2444555555554333 256779999999999999
Q ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcC--CcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhc
Q 000674 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~--~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1358)
|||+.+|+++|||||||+||+...+++.+.+.....+ |.|+|+||||++.+.. ||+|++|++|++++.|+++++..+
T Consensus 150 RAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 150 RAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999998877655444 7899999999999765 899999999999999999999865
Q ss_pred C
Q 000674 809 G 809 (1358)
Q Consensus 809 ~ 809 (1358)
.
T Consensus 230 p 230 (362)
T TIGR03258 230 P 230 (362)
T ss_pred c
Confidence 4
No 145
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=6.1e-37 Score=360.01 Aligned_cols=201 Identities=31% Similarity=0.433 Sum_probs=172.3
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-----------~i~yv 663 (1358)
++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| +++||
T Consensus 3 L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v 79 (353)
T PRK10851 3 IEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFV 79 (353)
T ss_pred EEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEE
Confidence 789999999974 4699999999999999999999999999999999999999999999987 39999
Q ss_pred eCCCCCC-CCCHHHHHhcCCCC-------CH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000674 664 SQTSWIQ-SGSIRDNILYGKPM-------DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1358)
Q Consensus 664 ~Q~~~~~-~~tv~eni~~g~~~-------~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 731 (1358)
+|++.++ +.|++||+.|+... +. ++..+.++..++.... ..++.+|||||||||+||
T Consensus 80 ~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LSgGq~QRvalA 148 (353)
T PRK10851 80 FQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA-----------DRYPAQLSGGQKQRVALA 148 (353)
T ss_pred ecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHHHHH
Confidence 9999876 57999999987431 21 2334455555554322 256789999999999999
Q ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcC-CcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhcC
Q 000674 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1358)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1358)
||++.+|+++||||||++||+.+.+++.+.+.....+ |+|+|+||||++.+.. ||+|++|++|++++.|+++++..+.
T Consensus 149 rAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p 228 (353)
T PRK10851 149 RALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREP 228 (353)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999999998776654444 7899999999999766 8999999999999999999997654
No 146
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.8e-37 Score=343.28 Aligned_cols=199 Identities=30% Similarity=0.406 Sum_probs=168.3
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-----------~i~yv 663 (1358)
++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v 79 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFV 79 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEE
Confidence 789999999974 4699999999999999999999999999999999999999999999876 38999
Q ss_pred eCCCCCC-CCCHHHHHhcCCCC-------CH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000674 664 SQTSWIQ-SGSIRDNILYGKPM-------DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1358)
Q Consensus 664 ~Q~~~~~-~~tv~eni~~g~~~-------~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 731 (1358)
+|+|.++ +.|++||+.++... +. ++..+.++.+++.... ..++.+||||||||++||
T Consensus 80 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la 148 (239)
T cd03296 80 FQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLA-----------DRYPAQLSGGQRQRVALA 148 (239)
T ss_pred ecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhh-----------hcChhhCCHHHHHHHHHH
Confidence 9999876 57999999876321 11 2233444555543322 356678999999999999
Q ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHh
Q 000674 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1358)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1358)
||++.+|+++||||||++||+++.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 149 RALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 999999999999999999999999998876655444 37899999999998765 89999999999999999988764
No 147
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-37 Score=352.63 Aligned_cols=204 Identities=25% Similarity=0.423 Sum_probs=171.6
Q ss_pred EEEEeeEEEeCCCC--CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000674 595 VKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1358)
Q Consensus 595 i~~~~~~f~~~~~~--~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------- 658 (1358)
|+++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|.|.++|++|+|.++|
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999997532 13699999999999999999999999999999999999999999998853
Q ss_pred -----------------------eEEEEeCCC--CCCCCCHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCC
Q 000674 659 -----------------------SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFD 706 (1358)
Q Consensus 659 -----------------------~i~yv~Q~~--~~~~~tv~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~ 706 (1358)
.||||+|+| .++..||+|||.|+.. .++ ++..++++.++|..++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~---- 158 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESY---- 158 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh----
Confidence 279999986 4677899999998742 222 2345556666654222
Q ss_pred CCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-c
Q 000674 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-V 785 (1358)
Q Consensus 707 ~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~ 785 (1358)
.++++.+||||||||++||||++.+|+++||||||++||+...+.+.+.+.....+|+|+|++|||++.+.. |
T Consensus 159 ------~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~a 232 (305)
T PRK13651 159 ------LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWT 232 (305)
T ss_pred ------hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhC
Confidence 225678999999999999999999999999999999999999999887665554568999999999998765 9
Q ss_pred CeEEEEeCCeEEEecChHHHHhc
Q 000674 786 DRILVLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 786 d~i~~l~~G~i~~~g~~~~l~~~ 808 (1358)
|+|++|++|++++.|+++++..+
T Consensus 233 drv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 233 KRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999998654
No 148
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=7.8e-37 Score=353.91 Aligned_cols=202 Identities=24% Similarity=0.388 Sum_probs=171.5
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eE
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------------~i 660 (1358)
..++++|++++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| ++
T Consensus 6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcE
Confidence 46899999999973 4699999999999999999999999999999999999999999999976 49
Q ss_pred EEEeCCCCCC-CCCHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000674 661 AYVSQTSWIQ-SGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1358)
Q Consensus 661 ~yv~Q~~~~~-~~tv~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 732 (1358)
||+||++.++ +.|++||+.+... .+. ++..++++.+++.... ..+..+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKA-----------DAKVGELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHh-----------cCchhhCCHHHHHHHHHHH
Confidence 9999998875 5799999985221 121 2333445555544322 2456789999999999999
Q ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhc
Q 000674 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 733 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1358)
|++++|++++|||||++||+...+++++.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999988765555568999999999999976 999999999999999999998643
No 149
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=6.7e-37 Score=343.36 Aligned_cols=199 Identities=22% Similarity=0.350 Sum_probs=166.5
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------eE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------~i 660 (1358)
++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468899999963 4699999999999999999999999999999999999999999998876 28
Q ss_pred EEEeCCCCCCC-CCHHHHHhcCCCC-------------CH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCCh
Q 000674 661 AYVSQTSWIQS-GSIRDNILYGKPM-------------DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1358)
Q Consensus 661 ~yv~Q~~~~~~-~tv~eni~~g~~~-------------~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSG 722 (1358)
+|++|++.++. .|++||+.++... +. ++..+.++..++.. ..+.++.+|||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSg 146 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD-----------LADRPAGELSY 146 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccc-----------hhhCChhhCCH
Confidence 99999987765 5999999875321 01 12223333333322 23467789999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecC
Q 000674 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1358)
Q Consensus 723 GQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1358)
|||||++||||++.+|++++|||||++||+.+.+.+++.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 147 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~ 226 (236)
T cd03219 147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecC
Confidence 99999999999999999999999999999999999988766544478999999999999876 89999999999999999
Q ss_pred hHHHHh
Q 000674 802 YQELLL 807 (1358)
Q Consensus 802 ~~~l~~ 807 (1358)
++++..
T Consensus 227 ~~~~~~ 232 (236)
T cd03219 227 PDEVRN 232 (236)
T ss_pred HHHhcc
Confidence 888753
No 150
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9e-37 Score=361.45 Aligned_cols=202 Identities=26% Similarity=0.382 Sum_probs=173.3
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEE
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-----------~i~y 662 (1358)
.++++|++++|+. .++|+|+||++++||+++|+|||||||||||++|+|+++|++|+|.++| .++|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~ 79 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGM 79 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEE
Confidence 4789999999973 4689999999999999999999999999999999999999999999977 3999
Q ss_pred EeCCCCCC-CCCHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000674 663 VSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1358)
Q Consensus 663 v~Q~~~~~-~~tv~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal 734 (1358)
++|++.++ +.|++||+.|+.. .+ .++..++++.+++...++ .++.+|||||||||+||||+
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~-----------~~~~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLD-----------RKPKALSGGQRQRVAIGRTL 148 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhc-----------CChhhCCHHHHHHHHHHHHH
Confidence 99998876 5799999998642 22 234455666666654333 55678999999999999999
Q ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhcC
Q 000674 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1358)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1358)
+.+|+++||||||++||+...+.+.+.+..... .|+|+|+||||++.+.. ||+|++|++|++.+.|+++++....
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p 225 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999998877655444 38999999999998765 8999999999999999999987643
No 151
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.2e-37 Score=337.55 Aligned_cols=192 Identities=31% Similarity=0.417 Sum_probs=162.2
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-----------~i~yv 663 (1358)
++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v 77 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMV 77 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEE
Confidence 468899999964 4699999999999999999999999999999999999999999999876 38999
Q ss_pred eCCCCCC-CCCHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHh
Q 000674 664 SQTSWIQ-SGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1358)
Q Consensus 664 ~Q~~~~~-~~tv~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~ 735 (1358)
+|++.++ +.|++||+.++.. .+. ++..+.++.+++...++ +...+||||||||++||||++
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLN-----------RYPHELSGGQQQRVALARALA 146 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHHHHHHHHh
Confidence 9998765 5799999987532 122 23445555555544333 456789999999999999999
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEec
Q 000674 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1358)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1358)
.+|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++++.. ||++++|++|++++.|
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999876655444 48999999999998866 8999999999998765
No 152
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.6e-36 Score=335.87 Aligned_cols=198 Identities=42% Similarity=0.792 Sum_probs=177.6
Q ss_pred EEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------
Q 000674 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------------- 658 (1358)
Q Consensus 596 ~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g----------------- 658 (1358)
.+.|++|+|+.+ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 567899999854 4699999999999999999999999999999999999999999998854
Q ss_pred eEEEEeCCCCCCCCCHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000674 659 SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1358)
Q Consensus 659 ~i~yv~Q~~~~~~~tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~ 738 (1358)
.++|++|++.+++.|++||+.++.+.+.++..++++.+++.+.++.+|.|+++.++.++.+||||||||++||||++.+|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 38999999998889999999987666666677888999998888889999999899999999999999999999999999
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHH-HHhHh-cCCcEEEEEcCCcchhhccCeEEEEeCCe
Q 000674 739 DIYLFDDPFSAVDAHTAATLFNE-CVMAA-LEKKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1358)
Q Consensus 739 ~illLDep~s~lD~~~~~~i~~~-~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~G~ 795 (1358)
+++||||||++||+.+.+.+.+. ++... .+++|+|++||+.+.+..||++++|++|+
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999988773 44433 34789999999999988899999999884
No 153
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-36 Score=350.46 Aligned_cols=205 Identities=21% Similarity=0.411 Sum_probs=170.7
Q ss_pred cEEEEeeEEEeCCCC--CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000674 594 SVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~--~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------------- 658 (1358)
.++++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997432 24699999999999999999999999999999999999999999998876
Q ss_pred ----eEEEEeCCC--CCCCCCHHHHHhcCCC---CCHH----HHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHH
Q 000674 659 ----SIAYVSQTS--WIQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1358)
Q Consensus 659 ----~i~yv~Q~~--~~~~~tv~eni~~g~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 725 (1358)
.||||+|+| .++..|++|||.|+.. .+.+ +..+.++.+++..+. ....+.+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~ 151 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDV----------MSQSPFQMSGGQM 151 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcccCCHHHH
Confidence 379999997 4677899999998632 2322 233444444443221 2256789999999
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChH
Q 000674 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1358)
Q Consensus 726 qRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1358)
||++||||++.+|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~ 231 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPK 231 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999998876655443 48999999999999865 8999999999999999999
Q ss_pred HHHhc
Q 000674 804 ELLLA 808 (1358)
Q Consensus 804 ~l~~~ 808 (1358)
++...
T Consensus 232 ~~~~~ 236 (286)
T PRK13646 232 ELFKD 236 (286)
T ss_pred HHHhC
Confidence 88653
No 154
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-36 Score=347.97 Aligned_cols=199 Identities=29% Similarity=0.460 Sum_probs=171.2
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~i 660 (1358)
.++++|++++|+.+ .++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++| .+
T Consensus 4 ~l~~~~l~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKDG--TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCCC--CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 48899999999632 4699999999999999999999999999999999999999999999877 38
Q ss_pred EEEeCCC--CCCCCCHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000674 661 AYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1358)
Q Consensus 661 ~yv~Q~~--~~~~~tv~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 731 (1358)
+|++|+| .++..|++||+.|+.. .+ .+++.++++.+++....+ ....+||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRD-----------KPPYHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhc-----------CChhhCCHHHHHHHHHH
Confidence 9999998 5678899999998632 22 234556666666654433 45568999999999999
Q ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHH
Q 000674 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1358)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1358)
||++.+|+++||||||++||+.+.+++.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999987666554568999999999999865 999999999999999998754
No 155
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.3e-37 Score=338.34 Aligned_cols=197 Identities=21% Similarity=0.367 Sum_probs=167.2
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------------~i~y 662 (1358)
++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEE
Confidence 468999999963 4699999999999999999999999999999999999999999999876 3899
Q ss_pred EeCCCCCCC-CCHHHHHhcCC---CCC----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000674 663 VSQTSWIQS-GSIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1358)
Q Consensus 663 v~Q~~~~~~-~tv~eni~~g~---~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal 734 (1358)
++|++.++. .|++||+.++. ..+ .++..+.++.+++....+ .+..+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAAD-----------RLVKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CChhhCCHHHHHHHHHHHHH
Confidence 999987654 69999998742 121 234455666666654332 45678999999999999999
Q ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcC-CcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHH
Q 000674 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1358)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1358)
+.+|+++||||||++||+++.+.+.+.+.....+ |+|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999988766655444 8899999999999876 899999999999999887764
No 156
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=8.5e-37 Score=337.76 Aligned_cols=190 Identities=24% Similarity=0.411 Sum_probs=160.8
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g---------------- 658 (1358)
++++|++++|+.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 6789999999643 24699999999999999999999999999999999999999999999876
Q ss_pred eEEEEeCCCCCC-CCCHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000674 659 SIAYVSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1358)
Q Consensus 659 ~i~yv~Q~~~~~-~~tv~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 730 (1358)
.++|++|++.++ +.|++||+.++.. .+ +++..++++.+++.+..+ ....+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAH-----------ALPMQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHHHH
Confidence 389999999865 4799999987521 11 234555666666654333 4557899999999999
Q ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeE
Q 000674 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1358)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1358)
|||++++|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++++.. ||++++|++|++
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999987665544468999999999999876 899999999975
No 157
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-36 Score=356.96 Aligned_cols=203 Identities=27% Similarity=0.371 Sum_probs=171.1
Q ss_pred EEEEeeEEEeCCCC-CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000674 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1358)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------- 658 (1358)
++++|++++|+... +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 68999999997321 35799999999999999999999999999999999999999999999876
Q ss_pred -eEEEEeCCCCCC-CCCHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000674 659 -SIAYVSQTSWIQ-SGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1358)
Q Consensus 659 -~i~yv~Q~~~~~-~~tv~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 729 (1358)
+++|++|++.++ +.|++||+.++.. .+. ++..+.++..++... ...++.+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDK-----------ADRYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHHHH
Confidence 399999999876 4799999987632 222 233344444444322 23567789999999999
Q ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHh
Q 000674 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1358)
Q Consensus 730 LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1358)
||||++++|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++++.|+.+++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999877665444 48999999999999876 89999999999999999999875
Q ss_pred c
Q 000674 808 A 808 (1358)
Q Consensus 808 ~ 808 (1358)
.
T Consensus 231 ~ 231 (343)
T PRK11153 231 H 231 (343)
T ss_pred C
Confidence 5
No 158
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.1e-36 Score=334.07 Aligned_cols=188 Identities=34% Similarity=0.503 Sum_probs=161.4
Q ss_pred EEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------eEEEEeCC
Q 000674 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAYVSQT 666 (1358)
Q Consensus 597 ~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g----------~i~yv~Q~ 666 (1358)
++|++++|+.. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|+
T Consensus 2 ~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~ 79 (205)
T cd03226 2 IENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQD 79 (205)
T ss_pred cccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecC
Confidence 57889999642 4699999999999999999999999999999999999999999999877 48999999
Q ss_pred C--CCCCCCHHHHHhcCCC---CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEE
Q 000674 667 S--WIQSGSIRDNILYGKP---MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741 (1358)
Q Consensus 667 ~--~~~~~tv~eni~~g~~---~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~il 741 (1358)
| .+++.|++||+.++.. .++++..++++.+++.+.++ .+..+||||||||++||||++.+|+++
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~~~p~ll 148 (205)
T cd03226 80 VDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKE-----------RHPLSLSGGQKQRLAIAAALLSGKDLL 148 (205)
T ss_pred hhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcC-----------CCchhCCHHHHHHHHHHHHHHhCCCEE
Confidence 7 4567899999988643 22345667777777754433 455689999999999999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEE
Q 000674 742 LFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1358)
Q Consensus 742 lLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1358)
||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|+++
T Consensus 149 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 149 IFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999887665544568999999999999875 8999999999874
No 159
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-36 Score=337.48 Aligned_cols=197 Identities=31% Similarity=0.422 Sum_probs=165.2
Q ss_pred EEEEeeEEEeCCCC-CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------eEEEEeC
Q 000674 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQ 665 (1358)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------~i~yv~Q 665 (1358)
++++|++++|+... .+++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 46899999997421 14699999999999999999999999999999999999999999999877 4899999
Q ss_pred CCCCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcC
Q 000674 666 TSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1358)
Q Consensus 666 ~~~~~~-~tv~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~ 737 (1358)
++.++. .|++||+.++.. .. .++..+.++.+++.+.++ .+..+||||||||++||||++++
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~al~~~ 149 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFEN-----------AYPHQLSGGMRQRVALARALAVD 149 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCcccCCHHHHHHHHHHHHHHcC
Confidence 998765 799999987532 11 234455666666654333 45678999999999999999999
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEe--CCeEEEecCh
Q 000674 738 ADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLE--GGQITQSGNY 802 (1358)
Q Consensus 738 ~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~--~G~i~~~g~~ 802 (1358)
|+++||||||++||+.+.+.+++.+..... .++|+|++||+++.+.. ||++++|+ +|+++++++.
T Consensus 150 p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 150 PDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999887655433 48999999999998765 89999999 7999988764
No 160
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.1e-36 Score=339.47 Aligned_cols=197 Identities=31% Similarity=0.442 Sum_probs=164.9
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCc-----cCCCcEEEEcC-----------
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI-----PKISGTVNLYG----------- 658 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~-----~~~~G~i~~~g----------- 658 (1358)
++++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|+|++ +|++|+|.++|
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 468999999964 36999999999999999999999999999999999999 99999998876
Q ss_pred ----eEEEEeCCCCCCCCCHHHHHhcCCCC----C----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHH
Q 000674 659 ----SIAYVSQTSWIQSGSIRDNILYGKPM----D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1358)
Q Consensus 659 ----~i~yv~Q~~~~~~~tv~eni~~g~~~----~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 726 (1358)
.++|++|++.+++.|++||+.++... . +++..++++.+++.+.+...++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 38999999987788999999875321 1 2234455555555443332100 5789999999
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHH
Q 000674 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1358)
Q Consensus 727 Rv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1358)
|++||||++.+|+++||||||++||+.+.+.+++.+.....+ +|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999999999999998766554445 899999999998865 89999999999999988665
No 161
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=2e-36 Score=332.70 Aligned_cols=192 Identities=22% Similarity=0.347 Sum_probs=166.0
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-----------~i~yv 663 (1358)
++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGAL 77 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEe
Confidence 468999999963 4699999999999999999999999999999999999999999999977 38999
Q ss_pred eCCCCCC-CCCHHHHHhcCC---CCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 000674 664 SQTSWIQ-SGSIRDNILYGK---PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1358)
Q Consensus 664 ~Q~~~~~-~~tv~eni~~g~---~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~ 739 (1358)
+|++.++ +.|++||+.++. ..++++.++.++..++...++ +++.+||||||||++||||++.+|+
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAK-----------KKVKGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHh-----------hhHhhCCHHHHHHHHHHHHHhcCCC
Confidence 9998765 689999997753 224556666777777765433 4567899999999999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEec
Q 000674 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1358)
Q Consensus 740 illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1358)
++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999887665544468999999999999876 8999999999998764
No 162
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-36 Score=338.97 Aligned_cols=202 Identities=25% Similarity=0.377 Sum_probs=172.5
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~i 660 (1358)
.++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4789999999963 4699999999999999999999999999999999999999999999876 38
Q ss_pred EEEeCCCCCCCCCHHHHHhcCCCC---CHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcC
Q 000674 661 AYVSQTSWIQSGSIRDNILYGKPM---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1358)
Q Consensus 661 ~yv~Q~~~~~~~tv~eni~~g~~~---~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~ 737 (1358)
+|++|++.++..|++||+.++... ..++..+.++.+++..++. .+.+.+||||||||++||||++++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYA----------TRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHh----------hCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999988888999999876422 2334555666666643221 246778999999999999999999
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhc
Q 000674 738 ADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 738 ~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1358)
|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 999999999999999999998876655444 48999999999999876 899999999999999999988654
No 163
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-36 Score=341.19 Aligned_cols=199 Identities=31% Similarity=0.419 Sum_probs=166.3
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g---------------- 658 (1358)
++++|++++|+.+ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPNG--KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCCc--cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 4688999999641 4699999999999999999999999999999999999999999998876
Q ss_pred eEEEEeCCCCCC-CCCHHHHHhcCCC------------CC---HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCCh
Q 000674 659 SIAYVSQTSWIQ-SGSIRDNILYGKP------------MD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1358)
Q Consensus 659 ~i~yv~Q~~~~~-~~tv~eni~~g~~------------~~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSG 722 (1358)
.++|++|++.++ +.|++||+.++.. .. .++..+.++.+++... ...++.+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDK-----------AYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhh-----------hCCCcccCCH
Confidence 289999998765 4799999987531 01 1223334444444322 2356789999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEec
Q 000674 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1358)
Q Consensus 723 GQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1358)
|||||++||||++++|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 999999999999999999999999999999999999876665443 48999999999999885 8999999999999999
Q ss_pred ChHHHH
Q 000674 801 NYQELL 806 (1358)
Q Consensus 801 ~~~~l~ 806 (1358)
+++++.
T Consensus 228 ~~~~~~ 233 (241)
T cd03256 228 PPAELT 233 (241)
T ss_pred CHHHhh
Confidence 988863
No 164
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=2e-36 Score=341.04 Aligned_cols=198 Identities=31% Similarity=0.432 Sum_probs=166.8
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g---------------- 658 (1358)
++++|++++|+. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 678999999962 24699999999999999999999999999999999999999999999876
Q ss_pred eEEEEeCCCCCC-CCCHHHHHhcCCCC---------------CHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCCh
Q 000674 659 SIAYVSQTSWIQ-SGSIRDNILYGKPM---------------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1358)
Q Consensus 659 ~i~yv~Q~~~~~-~~tv~eni~~g~~~---------------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSG 722 (1358)
.++|++|++.++ +.|++||+.++... +.++..+.++.+++...+ ..++.+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKA-----------YQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCH
Confidence 289999998765 47999999875310 112334445555554332 356789999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEec
Q 000674 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1358)
Q Consensus 723 GQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1358)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999998876655433 47899999999999865 8999999999999999
Q ss_pred ChHHH
Q 000674 801 NYQEL 805 (1358)
Q Consensus 801 ~~~~l 805 (1358)
+++++
T Consensus 229 ~~~~~ 233 (243)
T TIGR02315 229 APSEL 233 (243)
T ss_pred CHHHh
Confidence 98886
No 165
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=2.1e-36 Score=358.59 Aligned_cols=201 Identities=24% Similarity=0.433 Sum_probs=173.4
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~i 660 (1358)
.++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++| ++
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4789999999973 4699999999999999999999999999999999999999999999987 38
Q ss_pred EEEeCCCCC-CCCCHHHHHhcCCC-----C------CHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHH
Q 000674 661 AYVSQTSWI-QSGSIRDNILYGKP-----M------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1358)
Q Consensus 661 ~yv~Q~~~~-~~~tv~eni~~g~~-----~------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 728 (1358)
|||+|++.+ ++.|++||+.+++. + +.++.+++++..++.+..+ ....+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~-----------~~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFAD-----------RPVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHH
Confidence 999999876 68899999988742 1 1234455566656543322 45678999999999
Q ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHh
Q 000674 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1358)
Q Consensus 729 ~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1358)
+|||||+++|+++||||||++||+.....+.+.+.....+|+|+|++||+++.+.+ ||++++|++|++++.|++++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999887666554468999999999999865 89999999999999999999875
Q ss_pred c
Q 000674 808 A 808 (1358)
Q Consensus 808 ~ 808 (1358)
.
T Consensus 229 ~ 229 (402)
T PRK09536 229 A 229 (402)
T ss_pred c
Confidence 4
No 166
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-36 Score=344.73 Aligned_cols=203 Identities=24% Similarity=0.429 Sum_probs=174.6
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~i 660 (1358)
.++++|+++.|+.. .+++|+|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++| .+
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 58999999999642 34699999999999999999999999999999999999999999999987 38
Q ss_pred EEEeCCC--CCCCCCHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000674 661 AYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1358)
Q Consensus 661 ~yv~Q~~--~~~~~tv~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 731 (1358)
+|++|++ .+++.|++|||.++.. .+. ++..++++.++|...++ ....+||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLN-----------REPHRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhh-----------CCcccCCHHHHHHHHHH
Confidence 9999998 4677899999988632 222 34556666667765444 45568999999999999
Q ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcC-CcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHHhc
Q 000674 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1358)
||++.+|+++||||||++||+.+.+.+++.+.....+ |+|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999998766655444 8999999999999888999999999999999999888654
No 167
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=2.7e-36 Score=335.36 Aligned_cols=198 Identities=30% Similarity=0.471 Sum_probs=165.0
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------eE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------~i 660 (1358)
++++|++++|+. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 468999999963 3699999999999999999999999999999999999999999999876 28
Q ss_pred EEEeCCCCCCC-CCHHHHHhcCCCCC-----HHHHHHHHHHh-ccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHH
Q 000674 661 AYVSQTSWIQS-GSIRDNILYGKPMD-----KARYDKAIKAC-ALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1358)
Q Consensus 661 ~yv~Q~~~~~~-~tv~eni~~g~~~~-----~~~~~~~~~~~-~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARa 733 (1358)
+|++|++.++. .|++||+.++.... .++..++++.+ .+.. ....++.+||||||||++||||
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-----------~~~~~~~~LS~G~~qrv~lara 146 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKE-----------RRKQLAGTLSGGEQQMLAIARA 146 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhh-----------hhhCchhhCCHHHHHHHHHHHH
Confidence 99999997765 59999998764321 11222333332 1211 1236678999999999999999
Q ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHH
Q 000674 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806 (1358)
Q Consensus 734 l~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 806 (1358)
++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++.+.|+.+++.
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 147 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred HhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 999999999999999999999999887665544468999999999998766 8999999999999999887764
No 168
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-36 Score=356.73 Aligned_cols=205 Identities=26% Similarity=0.361 Sum_probs=173.9
Q ss_pred CCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eE
Q 000674 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SI 660 (1358)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-----------~i 660 (1358)
...++++|++++|+. .++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++| .+
T Consensus 17 ~~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i 93 (377)
T PRK11607 17 TPLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPI 93 (377)
T ss_pred CceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 346999999999963 4689999999999999999999999999999999999999999999987 38
Q ss_pred EEEeCCCCCC-CCCHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000674 661 AYVSQTSWIQ-SGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1358)
Q Consensus 661 ~yv~Q~~~~~-~~tv~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 732 (1358)
|||+|++.++ +.||.|||.|+.. .+. ++..+.++..++.... ..++.+|||||||||+|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~-----------~~~~~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFA-----------KRKPHQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHH
Confidence 9999999876 5699999998742 222 2334455555554322 2567789999999999999
Q ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhcCc
Q 000674 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAGT 810 (1358)
Q Consensus 733 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1358)
|++.+|+++|||||||+||+...+.+.+.+..... .|.|+|+||||.+.+.. +|+|++|++|++++.|+++++..+..
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~ 242 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPT 242 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCc
Confidence 99999999999999999999999998876655433 48999999999998755 99999999999999999999986543
No 169
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-36 Score=344.41 Aligned_cols=200 Identities=26% Similarity=0.442 Sum_probs=170.8
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------eE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------~i 660 (1358)
++++|++++|+.+ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPDG--TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCCC--CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 6789999999632 4599999999999999999999999999999999999999999998876 28
Q ss_pred EEEeCCCC--CCCCCHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000674 661 AYVSQTSW--IQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1358)
Q Consensus 661 ~yv~Q~~~--~~~~tv~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 731 (1358)
+|++|+|. +++.|++||+.++.. .+ .++.+++++.+++.... ...+.+||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYR-----------HRSPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHh-----------cCCcccCCHHHHHHHHHH
Confidence 99999985 567899999988632 22 23344555556654433 245678999999999999
Q ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHHh
Q 000674 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL 807 (1358)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 807 (1358)
||++.+|+++||||||++||+.+.+.+++.+.....+|+|+|++||+++.+..||++++|++|++++.|+.+++..
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999988876554456899999999999997799999999999999999988764
No 170
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.7e-36 Score=335.81 Aligned_cols=191 Identities=28% Similarity=0.411 Sum_probs=159.3
Q ss_pred EEEEeeEEEeCCCC-CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000674 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1358)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------- 658 (1358)
++++|++++|+... ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999997421 14699999999999999999999999999999999999999999998765
Q ss_pred --eEEEEeCCCCCCC-CCHHHHHhcCCCC---C----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHH
Q 000674 659 --SIAYVSQTSWIQS-GSIRDNILYGKPM---D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1358)
Q Consensus 659 --~i~yv~Q~~~~~~-~tv~eni~~g~~~---~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 728 (1358)
.++|++|++.++. .|++||+.++... + +++..+.++.+++...+ ..++.+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRL-----------NHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhh-----------hcChhhcCHHHHHHH
Confidence 3899999988765 5999999885321 1 22344555555554322 356678999999999
Q ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhccCeEEEEeCCeE
Q 000674 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1358)
Q Consensus 729 ~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i 796 (1358)
+||||++.+|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+..||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999998876655444 48999999999998877899999999974
No 171
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2.5e-36 Score=353.08 Aligned_cols=202 Identities=27% Similarity=0.427 Sum_probs=171.2
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eE
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------------~i 660 (1358)
..|+++|++++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 40 ~~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~i 116 (340)
T PRK13536 40 VAIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARI 116 (340)
T ss_pred eeEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccE
Confidence 46999999999973 4699999999999999999999999999999999999999999999987 39
Q ss_pred EEEeCCCCCC-CCCHHHHHhc-CCC--CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000674 661 AYVSQTSWIQ-SGSIRDNILY-GKP--MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1358)
Q Consensus 661 ~yv~Q~~~~~-~~tv~eni~~-g~~--~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 732 (1358)
||+||++.++ +.|++||+.+ +.. .+. ++.+++++.+++.+.. ..+..+||||||||++|||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~-----------~~~~~~LS~G~kqrv~lA~ 185 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-----------DARVSDLSGGMKRRLTLAR 185 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------CCChhhCCHHHHHHHHHHH
Confidence 9999998874 6799999975 211 121 2233444444443221 2556789999999999999
Q ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhc
Q 000674 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 733 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1358)
|++++|+++||||||++||+.+.+++++.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999988776655568999999999999976 999999999999999999998643
No 172
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-36 Score=346.55 Aligned_cols=204 Identities=24% Similarity=0.423 Sum_probs=170.6
Q ss_pred cEEEEeeEEEeCCCC--CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000674 594 SVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~--~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------------- 658 (1358)
.++++|++++|++.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997421 24699999999999999999999999999999999999999999998876
Q ss_pred ----eEEEEeCCC--CCCCCCHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHH
Q 000674 659 ----SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1358)
Q Consensus 659 ----~i~yv~Q~~--~~~~~tv~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 725 (1358)
.++|++|+| .+++.|++||+.++.. ... ++..+.++.+++..++ ...++.+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDL----------ISKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhH----------hhCCcccCCHHHH
Confidence 279999997 4667899999987531 222 2344555555554222 1256789999999
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHH
Q 000674 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1358)
Q Consensus 726 qRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1358)
||++||||++.+|+++||||||++||+...+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999887665544468999999999999865 89999999999999999998
Q ss_pred HHh
Q 000674 805 LLL 807 (1358)
Q Consensus 805 l~~ 807 (1358)
+..
T Consensus 232 ~~~ 234 (287)
T PRK13641 232 IFS 234 (287)
T ss_pred Hhc
Confidence 764
No 173
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=3.4e-36 Score=349.13 Aligned_cols=201 Identities=26% Similarity=0.396 Sum_probs=170.1
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eE
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------------~i 660 (1358)
..++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 3 ~~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i 79 (303)
T TIGR01288 3 VAIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAI 79 (303)
T ss_pred cEEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcE
Confidence 45899999999973 4699999999999999999999999999999999999999999999876 38
Q ss_pred EEEeCCCCCC-CCCHHHHHhcC-C--CCCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000674 661 AYVSQTSWIQ-SGSIRDNILYG-K--PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1358)
Q Consensus 661 ~yv~Q~~~~~-~~tv~eni~~g-~--~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 732 (1358)
+|++|++.++ +.|++||+.+. . ..+. ++.++.++.+++.... ..+..+||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-----------DVRVALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHh-----------cCchhhCCHHHHHHHHHHH
Confidence 9999998776 57999999742 1 1222 2233444444443322 2456789999999999999
Q ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHh
Q 000674 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1358)
Q Consensus 733 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1358)
|++++|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999988766555568999999999999876 89999999999999999998864
No 174
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=3.9e-36 Score=336.96 Aligned_cols=200 Identities=23% Similarity=0.385 Sum_probs=168.8
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------------~i~y 662 (1358)
++++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| .++|
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGV 78 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEE
Confidence 678999999963 4699999999999999999999999999999999999999999999876 3899
Q ss_pred EeCCCCC-CCCCHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000674 663 VSQTSWI-QSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1358)
Q Consensus 663 v~Q~~~~-~~~tv~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal 734 (1358)
++|++.+ ++.|++||+.++.. ... ++..+.++..++.. ..++++.+||||||||++||||+
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrl~laral 147 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAE-----------RADDKVRELNGGHRRRVEIARAL 147 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHHHHHHHH
Confidence 9999876 57899999986532 222 12233344444432 23466789999999999999999
Q ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHHhc
Q 000674 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1358)
+.+|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 999999999999999999999999876655443 58999999999999888999999999999999999888654
No 175
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-36 Score=338.57 Aligned_cols=197 Identities=27% Similarity=0.316 Sum_probs=168.4
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------eEEEEe
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVS 664 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------~i~yv~ 664 (1358)
..++++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++
T Consensus 11 ~~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~ 87 (257)
T PRK11247 11 TPLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMF 87 (257)
T ss_pred CcEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEe
Confidence 46999999999973 4699999999999999999999999999999999999999999999876 489999
Q ss_pred CCCCCCC-CCHHHHHhcCCCC-CHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEE
Q 000674 665 QTSWIQS-GSIRDNILYGKPM-DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742 (1358)
Q Consensus 665 Q~~~~~~-~tv~eni~~g~~~-~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~ill 742 (1358)
|++.++. .|++||+.++... .+++..+.++..++...+ .+++.+||||||||++||||++.+|+++|
T Consensus 88 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGqkqrl~laraL~~~p~lll 156 (257)
T PRK11247 88 QDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRA-----------NEWPAALSGGQKQRVALARALIHRPGLLL 156 (257)
T ss_pred cCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9987765 7999999986321 234555666666665433 35678999999999999999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChH
Q 000674 743 FDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1358)
Q Consensus 743 LDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1358)
|||||++||+.+.+.+.+.+..... .++|+|++||+++++.. ||+|++|++|++++.|+.+
T Consensus 157 LDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 157 LDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999998876655433 47999999999999865 8999999999999887654
No 176
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-36 Score=336.53 Aligned_cols=197 Identities=24% Similarity=0.348 Sum_probs=165.0
Q ss_pred cEEEEeeEEEeCCCC-CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000674 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------- 658 (1358)
.++++|++++|+... ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 488999999997432 14699999999999999999999999999999999999999999999876
Q ss_pred ---eEEEEeCCCCCCC-CCHHHHHhcCC---CCCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000674 659 ---SIAYVSQTSWIQS-GSIRDNILYGK---PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1358)
Q Consensus 659 ---~i~yv~Q~~~~~~-~tv~eni~~g~---~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 727 (1358)
.++|++|++.++. .|++||+.++. ..+. ++..++++.+++... ..+++.+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHR-----------ANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHH
Confidence 3899999987764 59999998742 1221 234455555555332 235677899999999
Q ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhccCeEEEEeCCeEEEecC
Q 000674 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1358)
Q Consensus 728 v~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 801 (1358)
++||||++.+|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+..+|++++|++|++++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 9999999999999999999999999999998876655443 5899999999999998889999999999998765
No 177
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-36 Score=345.02 Aligned_cols=198 Identities=29% Similarity=0.389 Sum_probs=166.3
Q ss_pred EEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------e
Q 000674 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------S 659 (1358)
Q Consensus 597 ~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-----------------~ 659 (1358)
++|+++.|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 27 ~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 27 KEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 4566666653 4689999999999999999999999999999999999999999998865 3
Q ss_pred EEEEeCCCCCC-CCCHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000674 660 IAYVSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1358)
Q Consensus 660 i~yv~Q~~~~~-~~tv~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 731 (1358)
++|++|++.++ +.|++||+.++.. .+ .++..++++.+++.+.++ ....+||||||||++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qrv~lA 172 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEH-----------KYPDELSGGMQQRVGLA 172 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CCcccCCHHHHHHHHHH
Confidence 89999999876 5799999987521 22 234455666666654443 45568999999999999
Q ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhc
Q 000674 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1358)
||++++|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999998876655433 48999999999998865 899999999999999999998754
No 178
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-36 Score=336.60 Aligned_cols=202 Identities=27% Similarity=0.406 Sum_probs=168.5
Q ss_pred EEEEeeEEEeCCCC-CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000674 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1358)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------- 658 (1358)
++++|++++|+... ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 67899999997421 12799999999999999999999999999999999999999999998865
Q ss_pred -eEEEEeCCCCCCC-CCHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000674 659 -SIAYVSQTSWIQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1358)
Q Consensus 659 -~i~yv~Q~~~~~~-~tv~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 729 (1358)
.++|++|++.++. .|++||+.++.. .+. ++..+.++..++...+ .....+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKA-----------DAYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------hcChhhCCHHHHHHHH
Confidence 3899999998765 799999987521 221 2334445555554322 2566789999999999
Q ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcC-CcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHh
Q 000674 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1358)
Q Consensus 730 LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1358)
||||++.+|+++||||||++||+.+.+.+++.+.....+ |+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999988766554444 8999999999999876 89999999999999999887753
No 179
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-36 Score=339.19 Aligned_cols=204 Identities=25% Similarity=0.359 Sum_probs=172.3
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc---CCCcEEEEcC------------
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---KISGTVNLYG------------ 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~---~~~G~i~~~g------------ 658 (1358)
.|+++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 4789999999973 469999999999999999999999999999999999974 6899999876
Q ss_pred -eEEEEeCCCCCCCCCHHHHHhcCCCC---------CHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHH
Q 000674 659 -SIAYVSQTSWIQSGSIRDNILYGKPM---------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1358)
Q Consensus 659 -~i~yv~Q~~~~~~~tv~eni~~g~~~---------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 728 (1358)
.++|++|++.+++.|++||+.++... ..++..+.++.+++.+.+.. ...+++.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHH
Confidence 38999999998889999999875211 11234556677676543332 12356789999999999
Q ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHh
Q 000674 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1358)
Q Consensus 729 ~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1358)
+||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+.+++..
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKEL-SHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-hCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999887765444 458999999999999875 89999999999999999998864
Q ss_pred c
Q 000674 808 A 808 (1358)
Q Consensus 808 ~ 808 (1358)
.
T Consensus 231 ~ 231 (246)
T PRK14269 231 N 231 (246)
T ss_pred C
Confidence 3
No 180
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=2.7e-36 Score=332.94 Aligned_cols=189 Identities=37% Similarity=0.572 Sum_probs=159.8
Q ss_pred EEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------eEEEEeCCCC
Q 000674 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQTSW 668 (1358)
Q Consensus 597 ~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------~i~yv~Q~~~ 668 (1358)
++|++++|+. .++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .++|++|++.
T Consensus 2 ~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~ 78 (213)
T cd03235 2 VEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRS 78 (213)
T ss_pred cccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccc
Confidence 5788999963 4699999999999999999999999999999999999999999999987 3999999986
Q ss_pred C---CCCCHHHHHhcCCCC-----------CHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000674 669 I---QSGSIRDNILYGKPM-----------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1358)
Q Consensus 669 ~---~~~tv~eni~~g~~~-----------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal 734 (1358)
+ ++.|++||+.++... ..++.+++++.+++.+.++ .+..+||||||||++||||+
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~al 147 (213)
T cd03235 79 IDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD-----------RQIGELSGGQQQRVLLARAL 147 (213)
T ss_pred cccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHh-----------CCcccCCHHHHHHHHHHHHH
Confidence 5 457999999875321 1234556666667664443 45678999999999999999
Q ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEec
Q 000674 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1358)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1358)
+.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++++.. ||++++|++| +++.|
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999887666554478999999999999876 8999999886 55543
No 181
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-36 Score=340.70 Aligned_cols=205 Identities=24% Similarity=0.390 Sum_probs=171.0
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC---------
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG--------- 658 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~-----~~~G~i~~~g--------- 658 (1358)
..++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (253)
T PRK14242 5 PKMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81 (253)
T ss_pred cEEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence 46899999999963 369999999999999999999999999999999999864 5899998865
Q ss_pred ------eEEEEeCCCCCCCCCHHHHHhcCCC---C-C----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHH
Q 000674 659 ------SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1358)
Q Consensus 659 ------~i~yv~Q~~~~~~~tv~eni~~g~~---~-~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 724 (1358)
.++|++|++.+++.|++||+.++.. . . .++..+.++.+++.+.+. +..++.+.+|||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 154 (253)
T PRK14242 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQ 154 (253)
T ss_pred HHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHH
Confidence 3899999998887899999987521 1 1 233444555555543222 12346788999999
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChH
Q 000674 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1358)
Q Consensus 725 kqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1358)
||||+||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 155 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14242 155 QQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHEL-KARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTE 233 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999988766544 457899999999999865 8999999999999999998
Q ss_pred HHHhc
Q 000674 804 ELLLA 808 (1358)
Q Consensus 804 ~l~~~ 808 (1358)
++.+.
T Consensus 234 ~~~~~ 238 (253)
T PRK14242 234 QIFTR 238 (253)
T ss_pred HHHcC
Confidence 88643
No 182
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=6.8e-36 Score=328.22 Aligned_cols=189 Identities=25% Similarity=0.471 Sum_probs=163.6
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------e
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~ 659 (1358)
+.++++|++++|+.. ..++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 568999999999743 24699999999999999999999999999999999999999999999876 4
Q ss_pred EEEEeCCCCCCCCCHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 000674 660 IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1358)
Q Consensus 660 i~yv~Q~~~~~~~tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~ 739 (1358)
++|++|+|.+++.|++||+.+...++.++..+.++ +++++.+||||||||++||||++.+|+
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999988899999998654444332222221 235788999999999999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecC
Q 000674 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1358)
Q Consensus 740 illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 801 (1358)
++||||||++||+...+.+.+.+... .+++|+|++||+.+.+..+|++++|++|++.+.|+
T Consensus 146 llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 146 VLVLDEATASIDYATDALIQKTIREE-FTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 99999999999999999887765544 46899999999999987799999999999998775
No 183
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=4.3e-36 Score=333.17 Aligned_cols=198 Identities=24% Similarity=0.433 Sum_probs=167.1
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------------~i~y 662 (1358)
++++|+++.|+.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence 4689999999742 24699999999999999999999999999999999999999999999876 2899
Q ss_pred EeCCCCCC-CCCHHHHHhcCC---CCC----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000674 663 VSQTSWIQ-SGSIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1358)
Q Consensus 663 v~Q~~~~~-~~tv~eni~~g~---~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal 734 (1358)
++|++.++ +.|++||+.++. ... .++..++++.+++.+.++ ....+||||||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKAN-----------KRARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------ChhhhCCHHHHHHHHHHHHH
Confidence 99998776 679999998642 122 234455666666643332 45678999999999999999
Q ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHH
Q 000674 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1358)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1358)
+.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEV-RKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHH-hcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999988765543 346899999999999876 899999999999999988764
No 184
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=3.5e-36 Score=333.42 Aligned_cols=195 Identities=21% Similarity=0.353 Sum_probs=163.7
Q ss_pred EEEEeeEEEeCCCCC-CccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEE
Q 000674 595 VKIQEGNFSWDPELA-IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIA 661 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~-~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------------~i~ 661 (1358)
++++|++++|+.... .++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 678999999974311 2699999999999999999999999999999999999999999999876 389
Q ss_pred EEeCCCCCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHH
Q 000674 662 YVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1358)
Q Consensus 662 yv~Q~~~~~~-~tv~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARa 733 (1358)
|++|++.++. .|++||+.+... .+ .++..+.++..++.+.+ .+++.+||||||||++||||
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~lara 150 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELL-----------DRRVGGFSTGMRQKVAIARA 150 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hhhhhhcCHHHHHHHHHHHH
Confidence 9999998766 599999976421 11 23344555665554333 35678999999999999999
Q ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEec
Q 000674 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1358)
Q Consensus 734 l~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1358)
++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. +|++++|++|++.+.|
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999887665554568999999999998875 8999999999998754
No 185
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=3.8e-36 Score=336.42 Aligned_cols=199 Identities=23% Similarity=0.401 Sum_probs=166.5
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------eE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------~i 660 (1358)
++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|..+|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 468999999963 4699999999999999999999999999999999999999999998875 28
Q ss_pred EEEeCCCCCCC-CCHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000674 661 AYVSQTSWIQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1358)
Q Consensus 661 ~yv~Q~~~~~~-~tv~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 732 (1358)
+|++|++.++. .|++||+.++.+ ... ++.++.++..++... ..+.+.+||||||||++|||
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la~ 146 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHL-----------RKSKASSLSGGERRRVEIAR 146 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHHHHHH
Confidence 99999987765 599999987532 111 123334444444322 23567899999999999999
Q ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHh
Q 000674 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1358)
Q Consensus 733 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1358)
|++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++.+.|+.+++..
T Consensus 147 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 147 ALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999999999999999999999887665544568999999999988765 89999999999999999888753
No 186
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-36 Score=344.27 Aligned_cols=202 Identities=26% Similarity=0.448 Sum_probs=172.8
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------- 658 (1358)
.++++|++++|+. +.++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 5899999999963 24699999999999999999999999999999999999999999999876
Q ss_pred eEEEEeCCC--CCCCCCHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000674 659 SIAYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1358)
Q Consensus 659 ~i~yv~Q~~--~~~~~tv~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 729 (1358)
.++|++|+| .+++.|++||+.++.. +. .++..++++.+++.... ..++.+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK-----------DKPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------hCCcccCCHHHHHHHH
Confidence 289999998 4678899999987521 22 23445566666665432 2567899999999999
Q ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcC-CcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHh
Q 000674 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1358)
Q Consensus 730 LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1358)
||||++.+|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999988766554443 8999999999999875 99999999999999999999865
Q ss_pred c
Q 000674 808 A 808 (1358)
Q Consensus 808 ~ 808 (1358)
.
T Consensus 232 ~ 232 (283)
T PRK13636 232 E 232 (283)
T ss_pred C
Confidence 4
No 187
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5e-36 Score=343.77 Aligned_cols=201 Identities=26% Similarity=0.439 Sum_probs=176.5
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEE
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIA 661 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------------~i~ 661 (1358)
.++++|++..|+. ++.+|+||||++++||+++++||||||||||+++|+|+++|++|+|.+.| ++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheE
Confidence 4778999999973 24699999999999999999999999999999999999999999999988 499
Q ss_pred EEeCCCCC-CCCCHHHHHhcC-----CC--CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHH
Q 000674 662 YVSQTSWI-QSGSIRDNILYG-----KP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1358)
Q Consensus 662 yv~Q~~~~-~~~tv~eni~~g-----~~--~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARa 733 (1358)
|+||+|.+ .+.|++||+.|- .+ .+.++.+++++..+|.++. ..+..+||+|||||++||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHHH
Confidence 99999975 577999999873 22 2356777888888776522 25678899999999999999
Q ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCC-cEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHh
Q 000674 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-KTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1358)
Q Consensus 734 l~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~-~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1358)
|.++|++++|||||+||||..+..+++.+.....+| +||+++||.++.+.. ||+|++|++|++++.|+.+++..
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 999999999999999999999999988777666666 799999999999887 99999999999999999988754
No 188
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=3.2e-36 Score=332.44 Aligned_cols=192 Identities=30% Similarity=0.426 Sum_probs=162.1
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-----------~i~yv 663 (1358)
++++|++++|+. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~ 77 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMV 77 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEE
Confidence 468999999974 3699999999999999999999999999999999999999999999876 38999
Q ss_pred eCCCCCC-CCCHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHh
Q 000674 664 SQTSWIQ-SGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1358)
Q Consensus 664 ~Q~~~~~-~~tv~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~ 735 (1358)
+|++.++ +.|++||+.++.. ... ++..+.++..++...+ ...+.+||||||||++||||++
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qr~~laral~ 146 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLL-----------DRKPKQLSGGQRQRVALGRAIV 146 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHH-----------hCChhhCCHHHHHHHHHHHHHh
Confidence 9999876 5799999987521 222 2334445555554332 3566789999999999999999
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEec
Q 000674 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1358)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1358)
.+|+++||||||++||+++.+.+.+.+..... +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999998876655444 48999999999998876 8999999999998765
No 189
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=5.8e-36 Score=333.48 Aligned_cols=205 Identities=29% Similarity=0.439 Sum_probs=175.5
Q ss_pred CCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------
Q 000674 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1358)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------------ 658 (1358)
..+.++++|++++|+.....++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 45679999999999753234699999999999999999999999999999999999999999999876
Q ss_pred -eEEEEeCCCCCCCCCHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhc
Q 000674 659 -SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN 736 (1358)
Q Consensus 659 -~i~yv~Q~~~~~~~tv~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~ 736 (1358)
.++|++|++.+++.|++||+.++.. .......+..+...+.+.++.++.|..+..++++.+||||||||++||||+++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 3899999999888899999988643 22223333344455667788887776677788899999999999999999999
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeE
Q 000674 737 DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1358)
Q Consensus 737 ~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i 796 (1358)
+|+++||||||++||+++.+.+.+.+... .+++|+|++||+++++..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDW-PERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999987765543 346899999999999977999999999974
No 190
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-36 Score=339.14 Aligned_cols=205 Identities=29% Similarity=0.396 Sum_probs=170.7
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC---------
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~-----~~G~i~~~g--------- 658 (1358)
..++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 46899999999963 3699999999999999999999999999999999999987 489998865
Q ss_pred ------eEEEEeCCCCCCCCCHHHHHhcCCC----CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHH
Q 000674 659 ------SIAYVSQTSWIQSGSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1358)
Q Consensus 659 ------~i~yv~Q~~~~~~~tv~eni~~g~~----~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 724 (1358)
.++|++|++.+++.|++|||.++.. .+. ++..+.++.+++...+.. ....++.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgG~ 155 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKD-------KLNTNALSLSGGQ 155 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHH-------HHhCCcccCCHHH
Confidence 3899999998888999999988632 121 233444555554322211 1235678999999
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChH
Q 000674 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1358)
Q Consensus 725 kqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1358)
|||++||||++.+|+++||||||++||+.+.+.+++.+... .+++|+|++||+++++.. ||++++|++|++++.|+++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 234 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL-KESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTD 234 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999988765554 457899999999999865 8999999999999999999
Q ss_pred HHHhc
Q 000674 804 ELLLA 808 (1358)
Q Consensus 804 ~l~~~ 808 (1358)
++..+
T Consensus 235 ~~~~~ 239 (254)
T PRK14273 235 ELFFN 239 (254)
T ss_pred HHHhC
Confidence 88654
No 191
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=6.6e-36 Score=337.44 Aligned_cols=203 Identities=29% Similarity=0.421 Sum_probs=169.2
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCC-----CcEEEEcC-----------
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-----SGTVNLYG----------- 658 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~-----~G~i~~~g----------- 658 (1358)
++++|++++|+. .++++|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 689999999974 35899999999999999999999999999999999999998 99998865
Q ss_pred ----eEEEEeCCCCCCCCCHHHHHhcCCC----CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHH
Q 000674 659 ----SIAYVSQTSWIQSGSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1358)
Q Consensus 659 ----~i~yv~Q~~~~~~~tv~eni~~g~~----~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 726 (1358)
.++|+||++.+++.|++||+.++.. .+. ++..++++..++.++++ .....++.+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 3899999998888999999987521 111 23344555555542221 1234667899999999
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHH
Q 000674 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1358)
Q Consensus 727 Rv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1358)
|++||||++.+|+++||||||++||+.+.+.+++.+... .+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQEL-KKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999987755443 335899999999998865 899999999999999999888
Q ss_pred Hhc
Q 000674 806 LLA 808 (1358)
Q Consensus 806 ~~~ 808 (1358)
...
T Consensus 231 ~~~ 233 (247)
T TIGR00972 231 FTN 233 (247)
T ss_pred HhC
Confidence 643
No 192
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-36 Score=309.49 Aligned_cols=201 Identities=25% Similarity=0.346 Sum_probs=173.5
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------------~i~y 662 (1358)
+++.+++.+|++ ...+++|+||++++||+++|.|+||+||||+|++|.+++.|++|.|.++| +||.
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcce
Confidence 567889999986 34589999999999999999999999999999999999999999999987 5888
Q ss_pred EeCCCCC-CCCCHHHHHhcC-CCC------CHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000674 663 VSQTSWI-QSGSIRDNILYG-KPM------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1358)
Q Consensus 663 v~Q~~~~-~~~tv~eni~~g-~~~------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal 734 (1358)
++.+.-+ ...|++|||.|. +-+ -+.+..+..+..++.+-++ .+..++|-||||||+||||+
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~-----------rRv~~~S~G~kqkV~iARAl 148 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-----------RRVGEFSTGMKQKVAIARAL 148 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHH-----------HHHhhhchhhHHHHHHHHHH
Confidence 8865444 578999999863 211 2456677777777766555 56778999999999999999
Q ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhc
Q 000674 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1358)
++||++++||||+||||..+.+.+.+.+.+...+|++||+.||.++.++. ||+|+++++|+++..|+.+++.+.
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 99999999999999999999998877666666679999999999999985 999999999999999999998654
No 193
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=7.7e-36 Score=335.53 Aligned_cols=200 Identities=26% Similarity=0.417 Sum_probs=168.5
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------e
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g---------------~ 659 (1358)
++++|++++|+. .++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 678999999963 4699999999999999999999999999999999999999999998876 3
Q ss_pred EEEEeCCCCCC-CCCHHHHHhcCC----CCCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000674 660 IAYVSQTSWIQ-SGSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1358)
Q Consensus 660 i~yv~Q~~~~~-~~tv~eni~~g~----~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 730 (1358)
++|++|++.++ ..|++||+.++. ..+. ++..++++..++...+ ..++.+||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERA-----------HHYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHH-----------hcChhhcCHHHHHHHHH
Confidence 89999998765 579999998753 1222 2333444544443322 35667899999999999
Q ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhc
Q 000674 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1358)
|||++.+|++++|||||++||+++.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999887655544468999999999999876 899999999999999999887643
No 194
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-36 Score=337.60 Aligned_cols=202 Identities=28% Similarity=0.397 Sum_probs=167.5
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~i~ 661 (1358)
++++|++++|++. .++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4689999999742 4699999999999999999999999999999999999999999999876 389
Q ss_pred EEeCCCCCC-CCCHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHH
Q 000674 662 YVSQTSWIQ-SGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1358)
Q Consensus 662 yv~Q~~~~~-~~tv~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARa 733 (1358)
|++|++.++ ..|++||+.++.. .+. ++..+.++..++.. .....+++.+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHH
Confidence 999999876 5799999987532 221 22333444444432 011236678999999999999999
Q ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHh
Q 000674 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1358)
Q Consensus 734 l~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1358)
++.+|++++|||||++||+.+.+.+.+.+..... +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999999999998876665444 38999999999998765 89999999999999999888754
No 195
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-36 Score=343.40 Aligned_cols=205 Identities=20% Similarity=0.353 Sum_probs=169.6
Q ss_pred cEEEEeeEEEeCCCC--CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000674 594 SVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~--~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------------- 658 (1358)
.++++|++++|+... ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 378999999997432 14699999999999999999999999999999999999999999998876
Q ss_pred ----eEEEEeCCC--CCCCCCHHHHHhcCCC---CCHH----HHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHH
Q 000674 659 ----SIAYVSQTS--WIQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1358)
Q Consensus 659 ----~i~yv~Q~~--~~~~~tv~eni~~g~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 725 (1358)
.|+|++|++ .+++.|++||+.++.. .+.+ +.+++++..++..+. ...++.+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~ 151 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESL----------FEKNPFELSGGQM 151 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcccCCHHHH
Confidence 289999997 5677899999987531 2222 223334444443211 2356788999999
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHH
Q 000674 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1358)
Q Consensus 726 qRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1358)
||++||||++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 152 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (280)
T PRK13649 152 RRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKD 231 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999887765544458999999999999865 89999999999999999988
Q ss_pred HHhc
Q 000674 805 LLLA 808 (1358)
Q Consensus 805 l~~~ 808 (1358)
+...
T Consensus 232 ~~~~ 235 (280)
T PRK13649 232 IFQD 235 (280)
T ss_pred HhcC
Confidence 8653
No 196
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.3e-36 Score=342.36 Aligned_cols=204 Identities=22% Similarity=0.350 Sum_probs=173.8
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCC---cEEEEcC-----------
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS---GTVNLYG----------- 658 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~---G~i~~~g----------- 658 (1358)
..++++|+++.|+.. ..++++|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 468999999999643 2469999999999999999999999999999999999999987 8998876
Q ss_pred --eEEEEeCCCC--CCCCCHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000674 659 --SIAYVSQTSW--IQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1358)
Q Consensus 659 --~i~yv~Q~~~--~~~~tv~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 727 (1358)
.++|++|+|. +++.|++||+.|+.. .+. ++..++++.+++...++ ....+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYID-----------SEPANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhc-----------CCcccCCHHHHHH
Confidence 3899999984 568899999988632 222 23455666666654333 5567999999999
Q ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHH
Q 000674 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806 (1358)
Q Consensus 728 v~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 806 (1358)
++||||++++|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999876655444 389999999999998779999999999999999999886
Q ss_pred hc
Q 000674 807 LA 808 (1358)
Q Consensus 807 ~~ 808 (1358)
..
T Consensus 232 ~~ 233 (282)
T PRK13640 232 SK 233 (282)
T ss_pred cC
Confidence 43
No 197
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-35 Score=341.01 Aligned_cols=204 Identities=25% Similarity=0.393 Sum_probs=173.2
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~i 660 (1358)
.++++|++++|+.....++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48899999999753334699999999999999999999999999999999999999999999876 38
Q ss_pred EEEeCCCC--CCCCCHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000674 661 AYVSQTSW--IQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1358)
Q Consensus 661 ~yv~Q~~~--~~~~tv~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 731 (1358)
+|++|+|. +++.|+.|||.++.. ... ++.+++++.+++....+ .++..||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKT-----------REPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHHHHHH
Confidence 99999983 677899999987521 222 23455566666643322 45678999999999999
Q ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcC-CcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHHhc
Q 000674 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1358)
||++.+|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999988766554443 8999999999999888999999999999999999988654
No 198
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=8e-36 Score=347.90 Aligned_cols=208 Identities=24% Similarity=0.373 Sum_probs=172.7
Q ss_pred CCcEEEEeeEEEeCCCC----------CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---
Q 000674 592 DRSVKIQEGNFSWDPEL----------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--- 658 (1358)
Q Consensus 592 ~~~i~~~~~~f~~~~~~----------~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--- 658 (1358)
+.-++++|++++|+... ..++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 34689999999996421 24689999999999999999999999999999999999999999998876
Q ss_pred -------------eEEEEeCCCC--C-CCCCHHHHHhcCC-----CCCHH----HHHHHHHHhccHHHHhcCCCCCCccc
Q 000674 659 -------------SIAYVSQTSW--I-QSGSIRDNILYGK-----PMDKA----RYDKAIKACALDKDINNFDHGDLTEI 713 (1358)
Q Consensus 659 -------------~i~yv~Q~~~--~-~~~tv~eni~~g~-----~~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~i 713 (1358)
+++||+|+|. + +..||.|||.++. ..+++ +..+.++..++.++. .
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~----------~ 155 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNL----------I 155 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHH----------h
Confidence 4999999983 4 4689999997531 12322 333455555553221 2
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEE
Q 000674 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVL 791 (1358)
Q Consensus 714 g~~g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l 791 (1358)
...+.+|||||||||+||||++.+|+++|+||||++||+.+.+++.+.+..... .|.|+|+||||++.+.. ||+|++|
T Consensus 156 ~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl 235 (331)
T PRK15079 156 NRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVM 235 (331)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 356789999999999999999999999999999999999999999886655444 38999999999999976 8999999
Q ss_pred eCCeEEEecChHHHHhcC
Q 000674 792 EGGQITQSGNYQELLLAG 809 (1358)
Q Consensus 792 ~~G~i~~~g~~~~l~~~~ 809 (1358)
++|+|++.|+.+++.++.
T Consensus 236 ~~G~ive~g~~~~i~~~~ 253 (331)
T PRK15079 236 YLGHAVELGTYDEVYHNP 253 (331)
T ss_pred ECCEEEEEcCHHHHHcCC
Confidence 999999999999998654
No 199
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.5e-36 Score=340.68 Aligned_cols=204 Identities=25% Similarity=0.412 Sum_probs=172.7
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------e
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~ 659 (1358)
..++++|++++|+.+ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 6 ~~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 6 VMIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred eEEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 358999999999632 34699999999999999999999999999999999999999999998876 3
Q ss_pred EEEEeCCC--CCCCCCHHHHHhcCCC---CCHH----HHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000674 660 IAYVSQTS--WIQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1358)
Q Consensus 660 i~yv~Q~~--~~~~~tv~eni~~g~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 730 (1358)
++|++|+| .+++.|++||+.++.. ++.+ +..++++..++...++ .++.+||||||||++|
T Consensus 85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~l 153 (271)
T PRK13632 85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLD-----------KEPQNLSGGQKQRVAI 153 (271)
T ss_pred eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CCcccCCHHHHHHHHH
Confidence 89999998 4567899999987531 2322 2345556666654433 4567999999999999
Q ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcC-CcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHHhc
Q 000674 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1358)
|||++.+|+++||||||++||+.+.+.+++.+.....+ ++|+|++||+++.+..||++++|++|++.+.|+.+++...
T Consensus 154 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 154 ASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999998776655444 5899999999998877999999999999999998887643
No 200
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.7e-36 Score=314.61 Aligned_cols=206 Identities=29% Similarity=0.439 Sum_probs=172.4
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe--------------
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-------------- 659 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g~-------------- 659 (1358)
-++++|++..|.. .++|+++||++++||+++++|+||+||||||++|+|..++.+|+|.++|.
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 4678999999975 47999999999999999999999999999999999999999999999883
Q ss_pred EEEEeCCCCCC-CCCHHHHHhcCCCCCHH-HHHH--HHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHh
Q 000674 660 IAYVSQTSWIQ-SGSIRDNILYGKPMDKA-RYDK--AIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1358)
Q Consensus 660 i~yv~Q~~~~~-~~tv~eni~~g~~~~~~-~~~~--~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~ 735 (1358)
|+||||.-.+| +.||+||+..|...... +..+ .-+...+-+.++. ....++.+|||||+|.+++||||+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lke-------r~~~~aG~LSGGEQQMLAiaRALm 152 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKE-------RRNQRAGTLSGGEQQMLAIARALM 152 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHH-------HhcCcccCCChHHHHHHHHHHHHh
Confidence 99999998876 67999999987432211 1111 1122223333322 234789999999999999999999
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcC-CcEEEEEcCCcchhh-ccCeEEEEeCCeEEEecChHHHHhcC
Q 000674 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLAG 809 (1358)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1358)
++|++++||||+.+|-|...++||+.+.....+ |-||++|.++..+.- -+||.++|++|+|+.+|+.+|+.++.
T Consensus 153 ~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 153 SRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred cCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 999999999999999999999999877666544 679999999999865 58999999999999999999998664
No 201
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.3e-36 Score=343.98 Aligned_cols=206 Identities=23% Similarity=0.375 Sum_probs=168.3
Q ss_pred CcEEEEeeEEEeCCCC--CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------
Q 000674 593 RSVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~--~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------------ 658 (1358)
+.++++|++++|+... ..++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 4689999999997532 13599999999999999999999999999999999999999999998765
Q ss_pred ------eEEEEeCCCC--CCCCCHHHHHhcCCC---CCHH----HHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChH
Q 000674 659 ------SIAYVSQTSW--IQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1358)
Q Consensus 659 ------~i~yv~Q~~~--~~~~tv~eni~~g~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 723 (1358)
.++|++|+|. +++.|++||+.++.. ...+ +..+.++.+++..+ ..++.+.+||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~----------~~~~~~~~LS~G 154 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPED----------YVKRSPFELSGG 154 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------HhcCChhhCCHH
Confidence 3899999984 566799999988632 2221 12233333333211 123567899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecC
Q 000674 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1358)
Q Consensus 724 QkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1358)
||||++||||++.+|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999998876654443 48999999999998765 89999999999999999
Q ss_pred hHHHHhc
Q 000674 802 YQELLLA 808 (1358)
Q Consensus 802 ~~~l~~~ 808 (1358)
++++.+.
T Consensus 235 ~~~~~~~ 241 (289)
T PRK13645 235 PFEIFSN 241 (289)
T ss_pred HHHHhcC
Confidence 9887643
No 202
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.9e-36 Score=329.00 Aligned_cols=192 Identities=28% Similarity=0.443 Sum_probs=161.6
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------eEEEEeC
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------SIAYVSQ 665 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g---------~i~yv~Q 665 (1358)
++++|+++.|+. +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q 77 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPE 77 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEecc
Confidence 468999999963 4699999999999999999999999999999999999999999999987 4999999
Q ss_pred CCCCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcC
Q 000674 666 TSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1358)
Q Consensus 666 ~~~~~~-~tv~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~ 737 (1358)
++.++. .|++||+.++.. .. .++..+.++..++...+ .++..+||||||||++||||++.+
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 78 ERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYA-----------NKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred CCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHH-----------hCcHhhCCHHHHHHHHHHHHHhcC
Confidence 987764 699999976421 11 22334455555554332 356778999999999999999999
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEec
Q 000674 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1358)
Q Consensus 738 ~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1358)
|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++.+.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999887765544568899999999999865 8999999999998754
No 203
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=8.7e-36 Score=340.22 Aligned_cols=202 Identities=23% Similarity=0.316 Sum_probs=169.3
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------- 658 (1358)
..++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (269)
T PRK11831 6 NLVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV 82 (269)
T ss_pred ceEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHH
Confidence 35899999999963 4699999999999999999999999999999999999999999998876
Q ss_pred --eEEEEeCCCCCCC-CCHHHHHhcCC----CCCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000674 659 --SIAYVSQTSWIQS-GSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1358)
Q Consensus 659 --~i~yv~Q~~~~~~-~tv~eni~~g~----~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 727 (1358)
.++|++|++.++. .|++||+.++. ..+. ++..+.++.+++.... ..+..+||||||||
T Consensus 83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qr 151 (269)
T PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAA-----------KLMPSELSGGMARR 151 (269)
T ss_pred hhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHH
Confidence 3899999998765 59999998642 1222 1233344444443222 24567899999999
Q ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHH
Q 000674 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1358)
Q Consensus 728 v~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1358)
++||||++.+|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 152 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 152 AALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999998876655443 37999999999999876 899999999999999999998
Q ss_pred Hhc
Q 000674 806 LLA 808 (1358)
Q Consensus 806 ~~~ 808 (1358)
.+.
T Consensus 232 ~~~ 234 (269)
T PRK11831 232 QAN 234 (269)
T ss_pred hcC
Confidence 754
No 204
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-35 Score=337.89 Aligned_cols=207 Identities=28% Similarity=0.410 Sum_probs=172.7
Q ss_pred CCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC-------
Q 000674 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG------- 658 (1358)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~-----~~~G~i~~~g------- 658 (1358)
..+.++++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|
T Consensus 10 ~~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~ 86 (260)
T PRK10744 10 APSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK 86 (260)
T ss_pred CCceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc
Confidence 3456899999999963 369999999999999999999999999999999999986 5899998865
Q ss_pred --------eEEEEeCCCCCCCCCHHHHHhcCCC----CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCCh
Q 000674 659 --------SIAYVSQTSWIQSGSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1358)
Q Consensus 659 --------~i~yv~Q~~~~~~~tv~eni~~g~~----~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSG 722 (1358)
+++|++|++.++..|++||+.++.. .+. ++..++++..++..++. ...++++.+|||
T Consensus 87 ~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~ 159 (260)
T PRK10744 87 QDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSG 159 (260)
T ss_pred cchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCH
Confidence 3899999998878999999987532 222 23445555555533222 123467889999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecC
Q 000674 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1358)
Q Consensus 723 GQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1358)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 160 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 238 (260)
T PRK10744 160 GQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL-KQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGN 238 (260)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999987766544 357899999999999865 89999999999999999
Q ss_pred hHHHHhc
Q 000674 802 YQELLLA 808 (1358)
Q Consensus 802 ~~~l~~~ 808 (1358)
.+++...
T Consensus 239 ~~~~~~~ 245 (260)
T PRK10744 239 TDTIFTK 245 (260)
T ss_pred HHHHHhC
Confidence 9988653
No 205
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=9.6e-36 Score=338.02 Aligned_cols=204 Identities=26% Similarity=0.408 Sum_probs=170.6
Q ss_pred CCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000674 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1358)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------------- 658 (1358)
++.++++|+++.|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (257)
T PRK10619 3 ENKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79 (257)
T ss_pred CccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccc
Confidence 356899999999973 4699999999999999999999999999999999999999999998776
Q ss_pred -------------eEEEEeCCCCCCC-CCHHHHHhcCC----CCCH----HHHHHHHHHhccHHHHhcCCCCCCccccCC
Q 000674 659 -------------SIAYVSQTSWIQS-GSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1358)
Q Consensus 659 -------------~i~yv~Q~~~~~~-~tv~eni~~g~----~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~ 716 (1358)
.++|++|++.++. .|++||+.++. ..+. ++..+.++..++...+ .+..
T Consensus 80 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~ 149 (257)
T PRK10619 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKY 149 (257)
T ss_pred ccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCC
Confidence 3899999998765 69999998642 1221 2333444444443221 1356
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCe
Q 000674 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1358)
Q Consensus 717 g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1358)
+.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|+
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~ 229 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 229 (257)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 78999999999999999999999999999999999999999987665544468999999999999986 89999999999
Q ss_pred EEEecChHHHHhc
Q 000674 796 ITQSGNYQELLLA 808 (1358)
Q Consensus 796 i~~~g~~~~l~~~ 808 (1358)
+++.|+++++...
T Consensus 230 i~~~~~~~~~~~~ 242 (257)
T PRK10619 230 IEEEGAPEQLFGN 242 (257)
T ss_pred EEEeCCHHHhhhC
Confidence 9999999987643
No 206
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=7.4e-36 Score=331.50 Aligned_cols=192 Identities=27% Similarity=0.413 Sum_probs=160.1
Q ss_pred EEEEeeEEEeCCCC-CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000674 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1358)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------- 658 (1358)
++++|++++|+... ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 67899999996422 24699999999999999999999999999999999999999999998865
Q ss_pred --eEEEEeCCCCCC-CCCHHHHHhcCC---CCCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHH
Q 000674 659 --SIAYVSQTSWIQ-SGSIRDNILYGK---PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1358)
Q Consensus 659 --~i~yv~Q~~~~~-~~tv~eni~~g~---~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 728 (1358)
.++|++|++.++ +.|++||+.++. .++. ++..+.++.+++...+ ...+.+||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRI-----------NHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHHH
Confidence 389999998776 579999998742 1221 2334455555554322 355678999999999
Q ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhccCeEEEEeCCeEE
Q 000674 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQIT 797 (1358)
Q Consensus 729 ~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~ 797 (1358)
+||||++.+|+++||||||++||+++.+.+.+.+..... .++|+|++||+++++..+|++++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 999999999999999999999999999998876655443 479999999999998889999999999985
No 207
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=5.3e-36 Score=352.44 Aligned_cols=189 Identities=33% Similarity=0.473 Sum_probs=162.4
Q ss_pred CccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------------eEEEEeCCCC
Q 000674 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------------SIAYVSQTSW 668 (1358)
Q Consensus 610 ~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g---------------------~i~yv~Q~~~ 668 (1358)
..+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| +++|++|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 4589999999999999999999999999999999999999999999876 3899999998
Q ss_pred CCC-CCHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000674 669 IQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1358)
Q Consensus 669 ~~~-~tv~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~i 740 (1358)
+++ .|++||+.++.. .++ ++..+.++..+|....+ ..+.+|||||||||+||||++++|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~-----------~~~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWAD-----------KKPGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 875 799999998642 222 23445566666543322 45678999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhcC
Q 000674 741 YLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1358)
Q Consensus 741 llLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1358)
+|||||||+||+.+.+.+++.+..... .++|+|++|||++++.. +|+|++|++|++++.|+++++..++
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p 256 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNP 256 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCc
Confidence 999999999999999999887766544 38999999999999755 8999999999999999999997653
No 208
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-35 Score=340.00 Aligned_cols=204 Identities=24% Similarity=0.376 Sum_probs=174.1
Q ss_pred cEEEEeeEEEeCCCC---CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------
Q 000674 594 SVKIQEGNFSWDPEL---AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~---~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------------ 658 (1358)
-++++|++++|+... .+++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 478999999997431 24699999999999999999999999999999999999999999999876
Q ss_pred --eEEEEeCCCC--CCCCCHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000674 659 --SIAYVSQTSW--IQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1358)
Q Consensus 659 --~i~yv~Q~~~--~~~~tv~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 727 (1358)
.++|++|+|. ++..|+.||+.|+.. .+ .++.+++++.+++.+.++ ....+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRR-----------HAPHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHH
Confidence 3899999984 566799999998632 12 234556677777765443 4567899999999
Q ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHH
Q 000674 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806 (1358)
Q Consensus 728 v~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 806 (1358)
++||||++.+|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999998876655433 489999999999998779999999999999999999986
Q ss_pred hc
Q 000674 807 LA 808 (1358)
Q Consensus 807 ~~ 808 (1358)
..
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 54
No 209
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-35 Score=336.53 Aligned_cols=200 Identities=21% Similarity=0.339 Sum_probs=168.0
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------~ 659 (1358)
.++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 5899999999963 4699999999999999999999999999999999999999999999876 2
Q ss_pred EEEEeCCCCCCC-CCHHHHHhcCCC-----------C-----C------HHHHHHHHHHhccHHHHhcCCCCCCccccCC
Q 000674 660 IAYVSQTSWIQS-GSIRDNILYGKP-----------M-----D------KARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1358)
Q Consensus 660 i~yv~Q~~~~~~-~tv~eni~~g~~-----------~-----~------~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~ 716 (1358)
++|++|++.++. .|++||+.++.. + + .++..+.++..++.. ....+
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~ 150 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLE-----------HANRQ 150 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhh-----------hhhCC
Confidence 789999998765 599999997521 0 0 012222333333322 23467
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcC-CcEEEEEcCCcchhhc-cCeEEEEeCC
Q 000674 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGG 794 (1358)
Q Consensus 717 g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G 794 (1358)
+.+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++.+.. ||++++|++|
T Consensus 151 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQG 230 (255)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 7899999999999999999999999999999999999999988766655444 8899999999999876 8999999999
Q ss_pred eEEEecChHHHHh
Q 000674 795 QITQSGNYQELLL 807 (1358)
Q Consensus 795 ~i~~~g~~~~l~~ 807 (1358)
++++.|+.+++..
T Consensus 231 ~i~~~~~~~~~~~ 243 (255)
T PRK11300 231 TPLANGTPEEIRN 243 (255)
T ss_pred eEEecCCHHHHhh
Confidence 9999999988754
No 210
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-35 Score=335.60 Aligned_cols=199 Identities=26% Similarity=0.397 Sum_probs=169.5
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~i~ 661 (1358)
++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 689999999963 4699999999999999999999999999999999999999999999876 389
Q ss_pred EEeCCCCCCC-CCHHHHHhcCCC-----C------CHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000674 662 YVSQTSWIQS-GSIRDNILYGKP-----M------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1358)
Q Consensus 662 yv~Q~~~~~~-~tv~eni~~g~~-----~------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 729 (1358)
|++|++.++. .|+.||+.++.. + +.++..++++.+++....+ .++..||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD-----------RRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc-----------CCcccCCHHHHHHHH
Confidence 9999987664 599999988631 1 1223445555555544332 567789999999999
Q ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHh
Q 000674 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1358)
Q Consensus 730 LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1358)
||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999999999999887665544468999999999999876 89999999999999999988754
No 211
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-35 Score=331.46 Aligned_cols=201 Identities=22% Similarity=0.356 Sum_probs=166.5
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------~ 659 (1358)
.++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4889999999963 4699999999999999999999999999999999999999999998876 2
Q ss_pred EEEEeCCCCCCC-CCHHHHHhcCCCC-CHHHH----HHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHH
Q 000674 660 IAYVSQTSWIQS-GSIRDNILYGKPM-DKARY----DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1358)
Q Consensus 660 i~yv~Q~~~~~~-~tv~eni~~g~~~-~~~~~----~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARa 733 (1358)
++|++|++.++. .|++||+.++... +.+.. .++++... .+.. ....++.+||||||||++||||
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~---~l~~-------~~~~~~~~LS~G~~qrl~la~a 151 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFP---RLHE-------RRIQRAGTMSGGEQQMLAIGRA 151 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHH---HHHH-------HHhCchhhCCHHHHHHHHHHHH
Confidence 899999988765 6999999886421 21222 22222221 1111 1124677899999999999999
Q ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHh
Q 000674 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1358)
Q Consensus 734 l~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1358)
++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 152 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred HHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 999999999999999999999999887766554568999999999998765 89999999999999999998864
No 212
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-35 Score=338.03 Aligned_cols=203 Identities=22% Similarity=0.334 Sum_probs=170.6
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~i 660 (1358)
.++++|++++|+.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 58999999999753 24689999999999999999999999999999999999999999999987 38
Q ss_pred EEEeCCCC--CCCCCHHHHHhcCCC---CCHH----HHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000674 661 AYVSQTSW--IQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1358)
Q Consensus 661 ~yv~Q~~~--~~~~tv~eni~~g~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 731 (1358)
+|++|+|. +++.|+++|+.++.. ...+ +..++++..++.+.. ..++.+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERA-----------DYEPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCCcccCCHHHHHHHHHH
Confidence 99999985 567799999988632 2222 233444444443322 246779999999999999
Q ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHHhc
Q 000674 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1358)
||++.+|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999998876655433 37999999999999877999999999999999999988654
No 213
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.1e-35 Score=336.58 Aligned_cols=201 Identities=27% Similarity=0.432 Sum_probs=167.8
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------- 658 (1358)
.++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 3789999999963 3699999999999999999999999999999999999999999997754
Q ss_pred ------eEEEEeCCCCCC-CCCHHHHHhcCC----CCCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChH
Q 000674 659 ------SIAYVSQTSWIQ-SGSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1358)
Q Consensus 659 ------~i~yv~Q~~~~~-~~tv~eni~~g~----~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 723 (1358)
.++|++|++.++ ..|++||+.++. ..+. ++..+.++..++... ...++.+||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G 148 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK-----------ETSYPRRLSGG 148 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcch-----------hhCChhhCChH
Confidence 389999998776 579999997642 1222 223333444444321 23567899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecCh
Q 000674 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1358)
Q Consensus 724 QkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1358)
||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+.
T Consensus 149 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 228 (250)
T PRK11264 149 QQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPA 228 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999887655544468999999999999876 899999999999999999
Q ss_pred HHHHhc
Q 000674 803 QELLLA 808 (1358)
Q Consensus 803 ~~l~~~ 808 (1358)
+++.+.
T Consensus 229 ~~~~~~ 234 (250)
T PRK11264 229 KALFAD 234 (250)
T ss_pred HHHhcC
Confidence 988643
No 214
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.9e-33 Score=306.56 Aligned_cols=505 Identities=15% Similarity=0.143 Sum_probs=316.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 000674 269 KVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVES-FTQRHCFFGSRRSGM 347 (1358)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~ 347 (1358)
-.++|.+++.++....+.+...+ ++-.++-.+-+++-+..+....-..+.+++.+..++.+ ++..--.+..+..-.
T Consensus 5 l~llr~nr~~~i~~~a~s~a~g~---~g~~lLa~in~al~e~~~~~~~~l~~f~~llllf~~ss~is~lg~t~~gq~~I~ 81 (546)
T COG4615 5 LLLLRQNRWPFISVMALSLASGA---LGIGLLAFINQALIETADTSLLVLPEFLGLLLLFMVSSLISQLGLTTLGQHFIY 81 (546)
T ss_pred HHHhcccccHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhcccceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788877665544443333 33333333333432222211111112222222222222 222222233344445
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000674 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLF 427 (1358)
Q Consensus 348 rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~ 427 (1358)
++|..++..|..--+ ..-.+.+.+.+..-++.|+..|.-.+..+..+-.+.+-+..++..|+++-+...+..++.+
T Consensus 82 klr~~~~~kil~tpl----erier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~i 157 (546)
T COG4615 82 KLRSEFIKKILDTPL----ERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWI 157 (546)
T ss_pred HHHHHHHHHHhcCHH----HHHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 666666655543222 2223355678899999999998866666665555555555666667666555555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHH--HHHHH-HHHHHHHHHHHHHHHHHHHHHH-
Q 000674 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEE--KFKSL-IESRREKEFKWLSEAQLRKAYG- 503 (1358)
Q Consensus 428 ~~~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~--~f~~~-i~~~R~~El~~l~~~~~~~~~~- 503 (1358)
++.+..+........++..+..+..|+-.+..+.++.|-|.+|+..=.. .+.+. +...++.+- ...+...+.
T Consensus 158 vv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~----~~~~~n~f~~ 233 (546)
T COG4615 158 VVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRH----HIIRANTFHL 233 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHh----hhhhhhHHHH
Confidence 6666667666666666677777888999999999999999998865321 12221 122222221 111111121
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccch
Q 000674 504 TVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV 583 (1358)
Q Consensus 504 ~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~ 583 (1358)
....|..-.+.+++....|......=-+...+.|.....-.++.|+.+....++.+.+|.++++||.++=.+|+...-..
T Consensus 234 la~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~~ 313 (546)
T COG4615 234 LAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPR 313 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCCC
Confidence 11223222222222211111111000112244444444556799999999999999999999999999854443322111
Q ss_pred hcccccCCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe----
Q 000674 584 RRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS---- 659 (1358)
Q Consensus 584 ~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g~---- 659 (1358)
.+ ..++-..++++|+.|+|.+. ..-+..||++|++||++-|+|.||||||||++.+.|+++|++|+|.++|+
T Consensus 314 ~q--~~p~~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~ 389 (546)
T COG4615 314 PQ--AFPDWKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSA 389 (546)
T ss_pred CC--cCCcccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCC
Confidence 11 11224579999999999864 26788999999999999999999999999999999999999999999985
Q ss_pred ---------EEEEeCCCCCCCCCHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000674 660 ---------IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1358)
Q Consensus 660 ---------i~yv~Q~~~~~~~tv~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 729 (1358)
++-|+-|-|+|+.+ +-+.. -.++..++-++...+....+ +.+|..+ ...||-|||.|++
T Consensus 390 e~ledYR~LfSavFsDyhLF~~l-----l~~e~~as~q~i~~~LqrLel~~kts-l~d~~fs-----~~kLStGQkKRlA 458 (546)
T COG4615 390 EQLEDYRKLFSAVFSDYHLFDQL-----LGPEGKASPQLIEKWLQRLELAHKTS-LNDGRFS-----NLKLSTGQKKRLA 458 (546)
T ss_pred CCHHHHHHHHHHHhhhHhhhHhh-----hCCccCCChHHHHHHHHHHHHhhhhc-ccCCccc-----ccccccchHHHHH
Confidence 22233333333221 11122 23455555555555554332 3344332 3579999999999
Q ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhH-hcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEe
Q 000674 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA-ALEKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1358)
Q Consensus 730 LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~-~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1358)
+--|+.-+.|||++||=-+.-||+-+++.++...-. ..+||||+.||||-.+...|||++.|++|++++.
T Consensus 459 ll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 459 LLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred HHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 999999999999999999999999999998877643 4579999999999999999999999999999864
No 215
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.5e-36 Score=324.47 Aligned_cols=188 Identities=29% Similarity=0.439 Sum_probs=164.0
Q ss_pred cceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------eEEEEeCCCC-CCCCC
Q 000674 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIAYVSQTSW-IQSGS 673 (1358)
Q Consensus 612 ~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-----------------~i~yv~Q~~~-~~~~t 673 (1358)
-++|+||+++.||+.+|.|-+|||||||++++.++.+|++|+|.++| +++.|+|+.- +++.|
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 47899999999999999999999999999999999999999999988 4999999965 57889
Q ss_pred HHHHHhcCCCC---C-H---HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCC
Q 000674 674 IRDNILYGKPM---D-K---ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1358)
Q Consensus 674 v~eni~~g~~~---~-~---~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep 746 (1358)
|.||+.||.+. + + ++..+.++..+|...-+ .++.+||||+||||.||||+..+|||+|+|||
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~-----------~yp~eLSGGMqQRVGLARAla~~~~IlLMDEa 191 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYAD-----------KYPNELSGGMQQRVGLARALANDPDILLMDEA 191 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhh-----------cCcccccchHHHHHHHHHHHccCCCEEEecCc
Confidence 99999999753 1 2 34445566667765444 45678999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhcCc
Q 000674 747 FSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAGT 810 (1358)
Q Consensus 747 ~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1358)
||||||-...++-+++..... -+||+|+||||+++.-+ .|||.+|++|+|++.|+++|+..++.
T Consensus 192 FSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PA 257 (386)
T COG4175 192 FSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPA 257 (386)
T ss_pred hhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCcc
Confidence 999999999999888876543 37999999999998654 79999999999999999999997654
No 216
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-35 Score=334.17 Aligned_cols=199 Identities=29% Similarity=0.389 Sum_probs=169.5
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~i~ 661 (1358)
++++|++++|+. .++|+|+||++++|++++|+|+||||||||+++|+|+.+|++|+|.++| .++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999974 4699999999999999999999999999999999999999999999877 289
Q ss_pred EEeCCCCC-CCCCHHHHHhcCCC-C------CHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHH
Q 000674 662 YVSQTSWI-QSGSIRDNILYGKP-M------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1358)
Q Consensus 662 yv~Q~~~~-~~~tv~eni~~g~~-~------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARa 733 (1358)
|++|++.+ ++.|++||+.++.. . ..++.++.++..++....+ ..+.+||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAG-----------RDYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHH
Confidence 99999876 67899999987532 1 1223445555555544322 4677999999999999999
Q ss_pred Hh------cCCCEEEEcCCCCCCCHHHHHHHHHHHHhHh-cCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHH
Q 000674 734 VY------NDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1358)
Q Consensus 734 l~------~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1358)
++ .+|+++||||||++||+.+.+++.+.+.... .+|+|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999887665544 468999999999999875 899999999999999999887
Q ss_pred Hh
Q 000674 806 LL 807 (1358)
Q Consensus 806 ~~ 807 (1358)
..
T Consensus 229 ~~ 230 (258)
T PRK13548 229 LT 230 (258)
T ss_pred hC
Confidence 64
No 217
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-35 Score=338.60 Aligned_cols=200 Identities=26% Similarity=0.366 Sum_probs=168.1
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------e
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g---------------~ 659 (1358)
++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 678999999963 4699999999999999999999999999999999999999999998865 3
Q ss_pred EEEEeCCCC--CCCCCHHHHHhcCC---CCCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000674 660 IAYVSQTSW--IQSGSIRDNILYGK---PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1358)
Q Consensus 660 i~yv~Q~~~--~~~~tv~eni~~g~---~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 730 (1358)
++|++|++. ++..|+.||+.++. ..+. ++..++++..++.... ..++.+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-----------HQPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh-----------cCCchhCCHHHHHHHHH
Confidence 899999985 46678999998742 1222 2233455555554322 24577899999999999
Q ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhc
Q 000674 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1358)
|||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999887665544468999999999999865 899999999999999999887653
No 218
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-35 Score=352.45 Aligned_cols=188 Identities=27% Similarity=0.407 Sum_probs=160.9
Q ss_pred ccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------eEEEEeCCCCCC-CC
Q 000674 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIAYVSQTSWIQ-SG 672 (1358)
Q Consensus 611 ~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-----------------~i~yv~Q~~~~~-~~ 672 (1358)
++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++| +++|++|++.++ +.
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 479999999999999999999999999999999999999999999875 389999999876 57
Q ss_pred CHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcC
Q 000674 673 SIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1358)
Q Consensus 673 tv~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDe 745 (1358)
|++||+.++.. ++. ++..++++.+++...++ .++.+|||||||||+||||++.+|+++||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~-----------~~~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAH-----------SYPDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhh-----------cCcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999998632 222 33445566666644332 5567899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhcC
Q 000674 746 PFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1358)
Q Consensus 746 p~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1358)
||++||+.+.+.+.+.+..... .++|+|++||+++.+.. ||+|++|++|++++.|+++++..+.
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~ 256 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNP 256 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCc
Confidence 9999999999999887765543 58999999999999865 8999999999999999999987653
No 219
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-35 Score=327.20 Aligned_cols=190 Identities=26% Similarity=0.398 Sum_probs=160.8
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------------~i~y 662 (1358)
++++|+++.|+. .++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEE
Confidence 468999999964 36999999999999 9999999999999999999999999999999877 3899
Q ss_pred EeCCCCCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000674 663 VSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1358)
Q Consensus 663 v~Q~~~~~~-~tv~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal 734 (1358)
++|++.++. .|++||+.+... .+ +++.++.++.+++....+ ..+.+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-----------KKIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-----------CchhhCCHHHHHHHHHHHHH
Confidence 999998765 599999986421 11 234455666666654332 45678999999999999999
Q ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEec
Q 000674 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1358)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1358)
+++|+++||||||++||+.+.+++.+.+.... +++|+|++||+++.+.. +|++++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELG-EDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999887665443 46899999999999875 8999999999998764
No 220
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.4e-35 Score=331.28 Aligned_cols=198 Identities=29% Similarity=0.471 Sum_probs=165.7
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------eE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------~i 660 (1358)
++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 468999999973 4699999999999999999999999999999999999999999999876 38
Q ss_pred EEEeCCCCCCC-CCHHHHHhcCCC-C--C-HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHh
Q 000674 661 AYVSQTSWIQS-GSIRDNILYGKP-M--D-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1358)
Q Consensus 661 ~yv~Q~~~~~~-~tv~eni~~g~~-~--~-~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~ 735 (1358)
+|++|++.++. .|++||+.++.. . + .+...++++..+... ....++..+||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~----------~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLK----------EMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHH----------HHhhCChhhCCHHHHHHHHHHHHHh
Confidence 99999998765 599999987532 1 1 223334444433111 1123567899999999999999999
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHH
Q 000674 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1358)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1358)
++|+++||||||++||+.+.+++.+.+..... .++|+|++||+++++.. ||+++++++|++++.|+.+++
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999998876665444 37999999999999886 899999999999999998887
No 221
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-35 Score=337.83 Aligned_cols=202 Identities=27% Similarity=0.423 Sum_probs=171.7
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~i 660 (1358)
.++++|++++|+.+ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 3 ~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 37899999999632 3599999999999999999999999999999999999999999999876 38
Q ss_pred EEEeCCCC--CCCCCHHHHHhcCC---CCCHH----HHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000674 661 AYVSQTSW--IQSGSIRDNILYGK---PMDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1358)
Q Consensus 661 ~yv~Q~~~--~~~~tv~eni~~g~---~~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 731 (1358)
+|++|+|. +++.|+.||+.++. ..+.+ +.++.++.+++.+.++ ..+..||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qrl~la 149 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRD-----------RVPHHLSGGEKKRVAIA 149 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhc-----------CCcccCCHHHHHHHHHH
Confidence 99999973 56789999998753 23332 3455666666654433 45678999999999999
Q ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcC-CcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhc
Q 000674 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1358)
||++.+|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 9999999999999999999999999988766554443 8999999999999865 899999999999999999998753
No 222
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-35 Score=339.07 Aligned_cols=201 Identities=25% Similarity=0.446 Sum_probs=169.8
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------e
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g---------------~ 659 (1358)
++++|++++|+. ..++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 679999999963 23699999999999999999999999999999999999999999998876 2
Q ss_pred EEEEeCCC--CCCCCCHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000674 660 IAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1358)
Q Consensus 660 i~yv~Q~~--~~~~~tv~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 730 (1358)
|+|++|++ .+++.|+.||+.++.. ... ++..++++.+++.... ..++.+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFE-----------NKPPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhh-----------cCChhhCCHHHHHHHHH
Confidence 79999997 4677899999987531 221 2344455555553221 24567899999999999
Q ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhc
Q 000674 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1358)
|||++.+|++++|||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999987766554468999999999999875 999999999999999999988653
No 223
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-35 Score=332.14 Aligned_cols=200 Identities=21% Similarity=0.377 Sum_probs=167.4
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------~ 659 (1358)
.++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3788999999963 4699999999999999999999999999999999999999999999876 3
Q ss_pred EEEEeCCCCCCC-CCHHHHHhcCCCC----CH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000674 660 IAYVSQTSWIQS-GSIRDNILYGKPM----DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1358)
Q Consensus 660 i~yv~Q~~~~~~-~tv~eni~~g~~~----~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 730 (1358)
++|++|++.++. .|++||+.++... +. ++..+.++..++.. ....+..+||||||||++|
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~l 148 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEH-----------LRDSMGQSLSGGERRRVEI 148 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHH-----------HhhcchhhCCHHHHHHHHH
Confidence 899999987665 6999999875321 21 22333444443322 2335678999999999999
Q ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHh
Q 000674 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1358)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1358)
|||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 149 ARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 999999999999999999999999998876654444468999999999988765 89999999999999999998864
No 224
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-35 Score=336.53 Aligned_cols=206 Identities=23% Similarity=0.378 Sum_probs=171.9
Q ss_pred CCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC-------
Q 000674 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG------- 658 (1358)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~-----~~G~i~~~g------- 658 (1358)
.+..++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 16 ~~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 16 TEIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred CCceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 4557999999999973 4699999999999999999999999999999999999975 899998876
Q ss_pred --------eEEEEeCCCCCCCCCHHHHHhcCCC---C--C----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCC
Q 000674 659 --------SIAYVSQTSWIQSGSIRDNILYGKP---M--D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1358)
Q Consensus 659 --------~i~yv~Q~~~~~~~tv~eni~~g~~---~--~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 721 (1358)
.++|++|++.+++.|++||+.++.. . . .++..++++.+++.+++. +..++++.+||
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS 165 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLS 165 (267)
T ss_pred cchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCC
Confidence 3899999998887899999987531 1 1 123345555555543221 12346778999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEec
Q 000674 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1358)
Q Consensus 722 GGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1358)
||||||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 166 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l-~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g 244 (267)
T PRK14235 166 GGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDEL-RQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVG 244 (267)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-hcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999987765443 347899999999999866 8999999999999999
Q ss_pred ChHHHHh
Q 000674 801 NYQELLL 807 (1358)
Q Consensus 801 ~~~~l~~ 807 (1358)
+.+++..
T Consensus 245 ~~~~~~~ 251 (267)
T PRK14235 245 DTEKMFT 251 (267)
T ss_pred CHHHHHh
Confidence 9988864
No 225
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.1e-35 Score=328.50 Aligned_cols=189 Identities=26% Similarity=0.409 Sum_probs=159.5
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g---------------- 658 (1358)
++++|++++|+.. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4689999999642 4699999999999999999999999999999999999999999998876
Q ss_pred eEEEEeCCCCCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000674 659 SIAYVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1358)
Q Consensus 659 ~i~yv~Q~~~~~~-~tv~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 730 (1358)
.++|++|++.++. .|++||+.++.. .+ .++..+.++.+++...++ ....+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHR-----------ALPAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CChhhcCHHHHHHHHH
Confidence 3899999998765 699999987531 12 123445566666654333 4566899999999999
Q ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeE
Q 000674 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1358)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1358)
|||++.+|+++||||||++||+++.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999887666544568999999999999876 899999999974
No 226
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2e-35 Score=332.75 Aligned_cols=198 Identities=22% Similarity=0.350 Sum_probs=166.5
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------eE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------~i 660 (1358)
++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999963 4699999999999999999999999999999999999999999999876 28
Q ss_pred EEEeCCCCCCC-CCHHHHHhcCCCCC---------------HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHH
Q 000674 661 AYVSQTSWIQS-GSIRDNILYGKPMD---------------KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1358)
Q Consensus 661 ~yv~Q~~~~~~-~tv~eni~~g~~~~---------------~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 724 (1358)
+|++|++.++. .|++||+.++...+ +++.++.++..++.. ...++..+|||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~Ge 148 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD-----------EADRLAGLLSHGQ 148 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHH
Confidence 99999998765 59999998753211 112233333333322 2346678999999
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChH
Q 000674 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1358)
Q Consensus 725 kqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1358)
|||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~ 227 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSL-AGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLD 227 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHH-hcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHH
Confidence 99999999999999999999999999999999988765544 347899999999999876 8999999999999999998
Q ss_pred HHHh
Q 000674 804 ELLL 807 (1358)
Q Consensus 804 ~l~~ 807 (1358)
++..
T Consensus 228 ~~~~ 231 (242)
T TIGR03411 228 QVQA 231 (242)
T ss_pred HHhc
Confidence 8764
No 227
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-35 Score=336.42 Aligned_cols=202 Identities=25% Similarity=0.355 Sum_probs=171.2
Q ss_pred CCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000674 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1358)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------------- 658 (1358)
+..++++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 9 ~~~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 85 (265)
T PRK10575 9 DTTFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85 (265)
T ss_pred CceEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhh
Confidence 446899999999963 4699999999999999999999999999999999999999999999887
Q ss_pred eEEEEeCCCCC-CCCCHHHHHhcCCC--------C---CHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHH
Q 000674 659 SIAYVSQTSWI-QSGSIRDNILYGKP--------M---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1358)
Q Consensus 659 ~i~yv~Q~~~~-~~~tv~eni~~g~~--------~---~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 726 (1358)
.++|++|++.+ +..|+.||+.++.. . +.++..+.++.+++...++ .+..+|||||||
T Consensus 86 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~q 154 (265)
T PRK10575 86 KVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAH-----------RLVDSLSGGERQ 154 (265)
T ss_pred heEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-----------CCcccCCHHHHH
Confidence 38999999755 55699999987531 1 1234455666666654333 456689999999
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHH
Q 000674 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1358)
Q Consensus 727 Rv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1358)
|++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~ 234 (265)
T PRK10575 155 RAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAE 234 (265)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHH
Confidence 99999999999999999999999999999998876655443 38999999999999865 89999999999999999988
Q ss_pred HHh
Q 000674 805 LLL 807 (1358)
Q Consensus 805 l~~ 807 (1358)
+..
T Consensus 235 ~~~ 237 (265)
T PRK10575 235 LMR 237 (265)
T ss_pred hcC
Confidence 754
No 228
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=2.1e-35 Score=336.47 Aligned_cols=205 Identities=24% Similarity=0.368 Sum_probs=168.7
Q ss_pred EEEEeeEEEeCCC------CCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------
Q 000674 595 VKIQEGNFSWDPE------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------- 658 (1358)
Q Consensus 595 i~~~~~~f~~~~~------~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g---------- 658 (1358)
++++|++++|+.. .++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999642 135799999999999999999999999999999999999999999998876
Q ss_pred ------eEEEEeCCCC--C-CCCCHHHHHhcCC----CCCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCC
Q 000674 659 ------SIAYVSQTSW--I-QSGSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1358)
Q Consensus 659 ------~i~yv~Q~~~--~-~~~tv~eni~~g~----~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 721 (1358)
.++|++|++. + ...|++||+.++. .++. ++..++++..++..+ ..+.++.+||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~LS 152 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSE----------DADKLPRQLS 152 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChh----------hhhCChhhCC
Confidence 3899999973 3 4579999996532 1221 233344444444311 1235678999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEe
Q 000674 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQS 799 (1358)
Q Consensus 722 GGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~ 799 (1358)
||||||++||||++++|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++++.
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 9999999999999999999999999999999999988876655444 38999999999999975 899999999999999
Q ss_pred cChHHHHhcC
Q 000674 800 GNYQELLLAG 809 (1358)
Q Consensus 800 g~~~~l~~~~ 809 (1358)
|+++++....
T Consensus 233 g~~~~~~~~~ 242 (265)
T TIGR02769 233 CDVAQLLSFK 242 (265)
T ss_pred CCHHHHcCCC
Confidence 9999987643
No 229
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-35 Score=325.50 Aligned_cols=190 Identities=29% Similarity=0.441 Sum_probs=160.8
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-----------~i~yv 663 (1358)
|+++|++++|+.. . .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 75 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSML 75 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEE
Confidence 4689999999632 2 399999999999999999999999999999999999999999987 38999
Q ss_pred eCCCCCCC-CCHHHHHhcCCCC-------CHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHh
Q 000674 664 SQTSWIQS-GSIRDNILYGKPM-------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1358)
Q Consensus 664 ~Q~~~~~~-~tv~eni~~g~~~-------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~ 735 (1358)
+|++.++. .|++||+.++... ++++..++++.+++...++ ....+||||||||++||||++
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEK-----------RLPGELSGGERQRVALARVLV 144 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHh-----------CCcccCCHHHHHHHHHHHHHh
Confidence 99998765 5999999876321 1334556666666654443 345689999999999999999
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEec
Q 000674 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1358)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1358)
.+|+++||||||++||+++.+.+.+.+..... +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 145 RDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999998876655433 48999999999999876 8999999999998654
No 230
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-35 Score=335.98 Aligned_cols=203 Identities=22% Similarity=0.303 Sum_probs=172.2
Q ss_pred CCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------
Q 000674 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1358)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------------ 658 (1358)
+...++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~~~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~ 80 (265)
T PRK10253 4 SVARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVA 80 (265)
T ss_pred cccEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHh
Confidence 3457899999999973 4699999999999999999999999999999999999999999999876
Q ss_pred -eEEEEeCCCCCC-CCCHHHHHhcCC-CC-------C---HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHH
Q 000674 659 -SIAYVSQTSWIQ-SGSIRDNILYGK-PM-------D---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1358)
Q Consensus 659 -~i~yv~Q~~~~~-~~tv~eni~~g~-~~-------~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 725 (1358)
.++|++|++.++ +.|++||+.++. +. . .++..++++..++.+.+ ..++.+||||||
T Consensus 81 ~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Gq~ 149 (265)
T PRK10253 81 RRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLA-----------DQSVDTLSGGQR 149 (265)
T ss_pred hheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHh-----------cCCcccCChHHH
Confidence 389999998765 579999998752 11 1 12344555555665432 256789999999
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChH
Q 000674 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1358)
Q Consensus 726 qRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1358)
||++||||++.+|+++||||||++||+.+.+++.+.+..... +|+|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 150 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 229 (265)
T PRK10253 150 QRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPK 229 (265)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999877655444 48899999999998865 8999999999999999998
Q ss_pred HHHh
Q 000674 804 ELLL 807 (1358)
Q Consensus 804 ~l~~ 807 (1358)
++..
T Consensus 230 ~~~~ 233 (265)
T PRK10253 230 EIVT 233 (265)
T ss_pred HHhh
Confidence 8764
No 231
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-35 Score=331.56 Aligned_cols=199 Identities=29% Similarity=0.400 Sum_probs=166.0
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------- 658 (1358)
.++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 3789999999964 4699999999999999999999999999999999999999999998865
Q ss_pred ----eEEEEeCCCCCCC-CCHHHHHhcCC----CCCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHH
Q 000674 659 ----SIAYVSQTSWIQS-GSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1358)
Q Consensus 659 ----~i~yv~Q~~~~~~-~tv~eni~~g~----~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 725 (1358)
.++|++|++.++. .|++||+.++. .... ++..+.++..++... ....+.+||||||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~ 147 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPY-----------ADRFPLHLSGGQQ 147 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHH
Confidence 3899999998764 69999997421 1111 223334444444332 2356679999999
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHH
Q 000674 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1358)
Q Consensus 726 qRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1358)
||++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 148 qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 227 (242)
T PRK11124 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999887655444468999999999999876 89999999999999999888
Q ss_pred HH
Q 000674 805 LL 806 (1358)
Q Consensus 805 l~ 806 (1358)
+.
T Consensus 228 ~~ 229 (242)
T PRK11124 228 FT 229 (242)
T ss_pred hc
Confidence 64
No 232
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.1e-35 Score=328.56 Aligned_cols=188 Identities=23% Similarity=0.421 Sum_probs=159.4
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g---------------- 658 (1358)
++++|++++|+. +.++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 678999999952 24699999999999999999999999999999999999999999998865
Q ss_pred eEEEEeCCCCCC-CCCHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000674 659 SIAYVSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1358)
Q Consensus 659 ~i~yv~Q~~~~~-~~tv~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 730 (1358)
.++|++|++.++ ..|++||+.++.. .+ +++..+.++..++.+.++ ....+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKAD-----------AFPEQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHHHH
Confidence 389999999876 4799999987521 22 234455666666654333 4456899999999999
Q ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCe
Q 000674 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1358)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1358)
|||++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999987766544468999999999999876 89999999985
No 233
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.1e-35 Score=327.63 Aligned_cols=187 Identities=31% Similarity=0.497 Sum_probs=157.4
Q ss_pred EEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEEE
Q 000674 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYV 663 (1358)
Q Consensus 597 ~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~i~yv 663 (1358)
++|++++|+.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 2 ~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 2 LKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred ceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 67899999642 24699999999999999999999999999999999999999999999876 38999
Q ss_pred eCCCC--CCCCCHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000674 664 SQTSW--IQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1358)
Q Consensus 664 ~Q~~~--~~~~tv~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal 734 (1358)
+|++. +++.|++||+.++.. .+. ++..+.++..++...++ +++.+||||||||++||||+
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRD-----------RSPFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHHHHHHHHHHHHH
Confidence 99983 578899999987522 221 23344555555543332 56678999999999999999
Q ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCe
Q 000674 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1358)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1358)
+++|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999988766554458999999999999987 89999999985
No 234
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.5e-35 Score=329.45 Aligned_cols=198 Identities=24% Similarity=0.341 Sum_probs=165.1
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------e
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~ 659 (1358)
..++++|+++.|+. .++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .
T Consensus 6 ~~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (225)
T PRK10247 6 PLLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82 (225)
T ss_pred ceEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhc
Confidence 46899999999963 4699999999999999999999999999999999999999999999886 3
Q ss_pred EEEEeCCCCCCCCCHHHHHhcCCC-----CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000674 660 IAYVSQTSWIQSGSIRDNILYGKP-----MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1358)
Q Consensus 660 i~yv~Q~~~~~~~tv~eni~~g~~-----~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal 734 (1358)
++|++|++.+++.|++||+.++.. .++++..+.++.+++.. +....++.+||||||||++||||+
T Consensus 83 i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~laral 152 (225)
T PRK10247 83 VSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRNL 152 (225)
T ss_pred cEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHHH
Confidence 899999999888899999986421 12233344555554432 122467789999999999999999
Q ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhccCeEEEEe-CCeEEEecChH
Q 000674 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLE-GGQITQSGNYQ 803 (1358)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~-~G~i~~~g~~~ 803 (1358)
+++|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.++.||++++|+ ++..+++|+|+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 153 QFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999988776554433 4889999999999998899999994 66677777764
No 235
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-35 Score=334.91 Aligned_cols=204 Identities=25% Similarity=0.432 Sum_probs=169.7
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCC---ccC--CCcEEEEcC----------
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE---IPK--ISGTVNLYG---------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~---~~~--~~G~i~~~g---------- 658 (1358)
.++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+ .+| ++|+|.++|
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 5789999999964 4699999999999999999999999999999999996 454 589998765
Q ss_pred -----eEEEEeCCCCCCCCCHHHHHhcCCC---C-C----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHH
Q 000674 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1358)
Q Consensus 659 -----~i~yv~Q~~~~~~~tv~eni~~g~~---~-~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 725 (1358)
.++|++|++.+++.|++||+.++.. . + +++..++++.+++.++++ +..++++.+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHH
Confidence 3899999998887899999987531 1 1 123344555555543222 123467889999999
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHH
Q 000674 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1358)
Q Consensus 726 qRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1358)
||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~ 231 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL-KKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKK 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999988766554 457899999999999865 89999999999999999999
Q ss_pred HHhc
Q 000674 805 LLLA 808 (1358)
Q Consensus 805 l~~~ 808 (1358)
+.++
T Consensus 232 ~~~~ 235 (250)
T PRK14245 232 IFTN 235 (250)
T ss_pred HhcC
Confidence 8654
No 236
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=2.3e-35 Score=329.12 Aligned_cols=196 Identities=28% Similarity=0.379 Sum_probs=164.3
Q ss_pred CcEEEEeeEEEeCCCCC-CccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000674 593 RSVKIQEGNFSWDPELA-IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~-~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------------- 658 (1358)
..++++|++++|+.... .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 35899999999975322 3589999999999999999999999999999999999999999998765
Q ss_pred ----eEEEEeCCCCCCC-CCHHHHHhcCC---CCC----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHH
Q 000674 659 ----SIAYVSQTSWIQS-GSIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1358)
Q Consensus 659 ----~i~yv~Q~~~~~~-~tv~eni~~g~---~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 726 (1358)
.++|++|++.++. .|++||+.++. ..+ .++..+.++.+++.+.++ .++.+|||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Ge~q 153 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLD-----------HLPAQLSGGEQQ 153 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CChhhCCHHHHH
Confidence 3899999987765 69999998642 111 234455666666654433 456689999999
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhccCeEEEEeCCeEEEe
Q 000674 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1358)
Q Consensus 727 Rv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1358)
|++||||++++|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+..||++++|++|++++.
T Consensus 154 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 154 RVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 99999999999999999999999999999998876655444 37899999999999877999999999999753
No 237
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-35 Score=335.80 Aligned_cols=206 Identities=22% Similarity=0.362 Sum_probs=170.2
Q ss_pred CCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC--------
Q 000674 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG-------- 658 (1358)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~-----~~~G~i~~~g-------- 658 (1358)
+..++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 11 ~~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 11 NIIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred CceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 346999999999974 469999999999999999999999999999999999987 5899998865
Q ss_pred -------eEEEEeCCCCCCCCCHHHHHhcCCCC---C---HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHH
Q 000674 659 -------SIAYVSQTSWIQSGSIRDNILYGKPM---D---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1358)
Q Consensus 659 -------~i~yv~Q~~~~~~~tv~eni~~g~~~---~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 725 (1358)
.++|++|++.++..|++||+.++... + +++..++++.+++...++ .....++.+||||||
T Consensus 88 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 160 (269)
T PRK14259 88 DPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYSLSGGQQ 160 (269)
T ss_pred CHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCcccCCHHHH
Confidence 38999999988778999999986432 1 123334455444432221 123467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeC-----------
Q 000674 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEG----------- 793 (1358)
Q Consensus 726 qRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~----------- 793 (1358)
||++||||++.+|+++||||||++||+.+.+++.+.+... .+++|+|++||+++.+.. ||++++|++
T Consensus 161 qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~ 239 (269)
T PRK14259 161 QRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHEL-KKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKV 239 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcCEEEEEecccccccccccc
Confidence 9999999999999999999999999999999988765443 457899999999998865 899999996
Q ss_pred CeEEEecChHHHHhc
Q 000674 794 GQITQSGNYQELLLA 808 (1358)
Q Consensus 794 G~i~~~g~~~~l~~~ 808 (1358)
|++++.|+.+++...
T Consensus 240 g~~~~~~~~~~~~~~ 254 (269)
T PRK14259 240 GYLVEFNETKKIFNS 254 (269)
T ss_pred ceEEEeCCHHHHHhC
Confidence 678999999998654
No 238
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=2.3e-35 Score=315.92 Aligned_cols=166 Identities=34% Similarity=0.593 Sum_probs=151.2
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe------------EEE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------IAY 662 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g~------------i~y 662 (1358)
++++|++++|+.. ..++++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|. ++|
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEE
Confidence 4689999999753 236999999999999999999999999999999999999999999998872 899
Q ss_pred EeCCCCCCCCCHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEE
Q 000674 663 VSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742 (1358)
Q Consensus 663 v~Q~~~~~~~tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~ill 742 (1358)
++|++++++.|++||+ +.+||||||||++||||++++|+++|
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999998889999998 45799999999999999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEec
Q 000674 743 FDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800 (1358)
Q Consensus 743 LDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g 800 (1358)
|||||++||+++.+.+++.+... .+++|+|++||++++++.||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEV-LKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999988766544 4689999999999999889999999999998754
No 239
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=2.4e-35 Score=341.47 Aligned_cols=198 Identities=24% Similarity=0.396 Sum_probs=169.7
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------------~i~y 662 (1358)
++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .+||
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEE
Confidence 789999999963 4699999999999999999999999999999999999999999999877 3999
Q ss_pred EeCCCCCC-CCCHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000674 663 VSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1358)
Q Consensus 663 v~Q~~~~~-~~tv~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal 734 (1358)
+||++.++ +.|++||+.+... .+ .++.+++++..++.+.. .++..+||||||||++||||+
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQ-----------HKKIGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-----------cCchhhCCHHHHHHHHHHHHH
Confidence 99999876 4699999975321 12 23445555555554332 356789999999999999999
Q ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHh
Q 000674 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1358)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1358)
+++|++++|||||++||+.+.+++++.+... .+++|+|++||+++.+.. ||+|++|++|++.+.|+.+++..
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~-~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNI-GKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999988766544 457999999999999876 99999999999999999999864
No 240
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.4e-35 Score=343.85 Aligned_cols=187 Identities=24% Similarity=0.385 Sum_probs=161.1
Q ss_pred CccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEEEeCCCCCC-CCCHHH
Q 000674 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAYVSQTSWIQ-SGSIRD 676 (1358)
Q Consensus 610 ~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------------~i~yv~Q~~~~~-~~tv~e 676 (1358)
.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .+||+||++.++ +.|++|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 85 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRE 85 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHH
Confidence 4699999999999999999999999999999999999999999999987 389999998775 469999
Q ss_pred HHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCC
Q 000674 677 NILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749 (1358)
Q Consensus 677 ni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep~s~ 749 (1358)
|+.+... .. .++.+++++.+++....+ .+..+||||||||++||||++++|++++|||||++
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEERAEELLELFELGEAAD-----------RPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhC-----------CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9986421 11 234555666666654332 56678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHh
Q 000674 750 VDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1358)
Q Consensus 750 lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1358)
||+.+.+.+++.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 99999999988666555568999999999999876 99999999999999999998864
No 241
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.7e-35 Score=334.23 Aligned_cols=199 Identities=27% Similarity=0.405 Sum_probs=168.4
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~i~ 661 (1358)
++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++| .++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 678999999963 4699999999999999999999999999999999999999999999877 389
Q ss_pred EEeCCCC-CCCCCHHHHHhcCCC-C------C----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000674 662 YVSQTSW-IQSGSIRDNILYGKP-M------D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1358)
Q Consensus 662 yv~Q~~~-~~~~tv~eni~~g~~-~------~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 729 (1358)
|++|++. .+..|++||+.++.. . . .++..++++.+++.+.. ..++.+||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLA-----------DRDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCHHHHHHHH
Confidence 9999985 457899999987531 1 0 12334455555554322 2567789999999999
Q ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHh
Q 000674 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1358)
Q Consensus 730 LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1358)
||||++.+|+++||||||++||+...+.+.+.+.....+++|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999999887665544458999999999999965 89999999999999999988754
No 242
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-35 Score=334.94 Aligned_cols=205 Identities=26% Similarity=0.379 Sum_probs=169.8
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC---------
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~-----~~G~i~~~g--------- 658 (1358)
..++++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|
T Consensus 11 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 11 PQIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eeEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 36899999999963 4699999999999999999999999999999999999975 799998765
Q ss_pred ------eEEEEeCCCCCCCCCHHHHHhcCCC---CCHH----HHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHH
Q 000674 659 ------SIAYVSQTSWIQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1358)
Q Consensus 659 ------~i~yv~Q~~~~~~~tv~eni~~g~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 725 (1358)
.++|++|++.++..|++||+.++.. .+.+ +..++++.+++..++. ....+++.+||||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 160 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS-------DRLKSPALSLSGGQQ 160 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCChhhCCHHHH
Confidence 3899999998888999999987531 2222 2334444444432211 123467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHH
Q 000674 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1358)
Q Consensus 726 qRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1358)
||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l-~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 239 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL-KKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQ 239 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH-hhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999987765544 357999999999999865 89999999999999999998
Q ss_pred HHhc
Q 000674 805 LLLA 808 (1358)
Q Consensus 805 l~~~ 808 (1358)
+.++
T Consensus 240 ~~~~ 243 (258)
T PRK14268 240 IFHN 243 (258)
T ss_pred HhcC
Confidence 8643
No 243
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-35 Score=334.78 Aligned_cols=208 Identities=24% Similarity=0.362 Sum_probs=174.0
Q ss_pred CCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC------
Q 000674 590 KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG------ 658 (1358)
Q Consensus 590 ~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~-----~~~G~i~~~g------ 658 (1358)
.....++++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 16 ~~~~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 92 (267)
T PRK14237 16 EEEIALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRK 92 (267)
T ss_pred CCCeEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccc
Confidence 34457999999999963 469999999999999999999999999999999999986 5899998775
Q ss_pred ---------eEEEEeCCCCCCCCCHHHHHhcCCC----CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCC
Q 000674 659 ---------SIAYVSQTSWIQSGSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1358)
Q Consensus 659 ---------~i~yv~Q~~~~~~~tv~eni~~g~~----~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 721 (1358)
.++|++|++.++..|++||+.++.. .++ ++..++++.+++.+++. +..++.+.+||
T Consensus 93 ~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS 165 (267)
T PRK14237 93 EINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLS 165 (267)
T ss_pred cCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCC
Confidence 3899999999888899999987532 111 23444556666543332 22456788999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEec
Q 000674 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1358)
Q Consensus 722 GGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1358)
||||||++||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 166 ~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g 244 (267)
T PRK14237 166 GGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFEL-KKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYD 244 (267)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999988765544 457899999999999865 8999999999999999
Q ss_pred ChHHHHhc
Q 000674 801 NYQELLLA 808 (1358)
Q Consensus 801 ~~~~l~~~ 808 (1358)
+++++...
T Consensus 245 ~~~~~~~~ 252 (267)
T PRK14237 245 KTRNIFTN 252 (267)
T ss_pred CHHHHhcC
Confidence 99988643
No 244
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-35 Score=325.80 Aligned_cols=198 Identities=27% Similarity=0.462 Sum_probs=168.5
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-----------~i~yv 663 (1358)
++++|++++|+. .+ .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 2 l~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 76 (232)
T PRK10771 2 LKLTDITWLYHH---LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSML 76 (232)
T ss_pred eEEEEEEEEECC---cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEE
Confidence 679999999963 22 399999999999999999999999999999999999999999887 38999
Q ss_pred eCCCCCCC-CCHHHHHhcCCC----CC---HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHh
Q 000674 664 SQTSWIQS-GSIRDNILYGKP----MD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1358)
Q Consensus 664 ~Q~~~~~~-~tv~eni~~g~~----~~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~ 735 (1358)
+|++.++. .|++||+.++.. .. +++..++++..++.+.++ ....+||||||||++||||++
T Consensus 77 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~ 145 (232)
T PRK10771 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLA-----------RLPGQLSGGQRQRVALARCLV 145 (232)
T ss_pred ecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHh-----------CCcccCCHHHHHHHHHHHHHh
Confidence 99997765 699999987531 11 234555666666665444 455689999999999999999
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhc
Q 000674 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1358)
++|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+.. ||++++|++|++.+.|+++++...
T Consensus 146 ~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 146 REQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999998876655443 48899999999999876 899999999999999999998754
No 245
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-35 Score=333.56 Aligned_cols=205 Identities=27% Similarity=0.418 Sum_probs=168.9
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc--C---CCcEEEEcC---------
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--K---ISGTVNLYG--------- 658 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~--~---~~G~i~~~g--------- 658 (1358)
..++++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|
T Consensus 11 ~~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~ 87 (259)
T PRK14274 11 EVYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87 (259)
T ss_pred ceEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccC
Confidence 35899999999973 469999999999999999999999999999999999987 3 589998765
Q ss_pred ------eEEEEeCCCCCCCCCHHHHHhcCCCC----CHH----HHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHH
Q 000674 659 ------SIAYVSQTSWIQSGSIRDNILYGKPM----DKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1358)
Q Consensus 659 ------~i~yv~Q~~~~~~~tv~eni~~g~~~----~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 724 (1358)
.++|++|++.+++.|++||+.++... +++ +..++++..++.+.+. ...+.++.+|||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq 160 (259)
T PRK14274 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQ 160 (259)
T ss_pred HHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHH
Confidence 38999999988888999999875321 211 2233444444433221 12346788999999
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChH
Q 000674 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1358)
Q Consensus 725 kqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1358)
|||++||||++.+|+++||||||++||+++.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 161 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 239 (259)
T PRK14274 161 QQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKL-KEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTN 239 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-hcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999887655443 457899999999999875 8999999999999999999
Q ss_pred HHHhc
Q 000674 804 ELLLA 808 (1358)
Q Consensus 804 ~l~~~ 808 (1358)
++..+
T Consensus 240 ~~~~~ 244 (259)
T PRK14274 240 KMFSN 244 (259)
T ss_pred HHhhC
Confidence 98654
No 246
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=2.9e-35 Score=333.18 Aligned_cols=200 Identities=27% Similarity=0.420 Sum_probs=167.9
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g---------------- 658 (1358)
|+++|+++.|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 468999999963 4699999999999999999999999999999999999999999998765
Q ss_pred ----------eEEEEeCCCCCC-CCCHHHHHhcCC----CCCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCC
Q 000674 659 ----------SIAYVSQTSWIQ-SGSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1358)
Q Consensus 659 ----------~i~yv~Q~~~~~-~~tv~eni~~g~----~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~ 719 (1358)
.++|++|++.++ ..|++||+.++. ..+. ++..+.++..++... ..+.+.+
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADK-----------ADHMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhH-----------hhcChhh
Confidence 389999998776 579999998752 1122 233444555554432 2356678
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEE
Q 000674 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1358)
Q Consensus 720 LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1358)
||||||||++||||++++|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++.+.. +|++++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999998876655444 38999999999999865 8999999999999
Q ss_pred EecChHHHHhc
Q 000674 798 QSGNYQELLLA 808 (1358)
Q Consensus 798 ~~g~~~~l~~~ 808 (1358)
+.|+++++.+.
T Consensus 227 ~~g~~~~~~~~ 237 (252)
T TIGR03005 227 EQGKPDEIFRQ 237 (252)
T ss_pred EeCCHHHHhcC
Confidence 99999988644
No 247
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-35 Score=332.14 Aligned_cols=204 Identities=28% Similarity=0.395 Sum_probs=169.1
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCC-----CcEEEEcC----------
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-----SGTVNLYG---------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~-----~G~i~~~g---------- 658 (1358)
.++++|+++.|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5889999999973 46999999999999999999999999999999999999987 69998754
Q ss_pred -----eEEEEeCCCCCCCCCHHHHHhcCCCC----CH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHH
Q 000674 659 -----SIAYVSQTSWIQSGSIRDNILYGKPM----DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1358)
Q Consensus 659 -----~i~yv~Q~~~~~~~tv~eni~~g~~~----~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 725 (1358)
.++|++|++.+++.|++||+.++... .+ ++..++++..++.+.++ ...+.++.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHHHH
Confidence 39999999998888999999886321 11 12233333334332221 123467889999999
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHH
Q 000674 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1358)
Q Consensus 726 qRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1358)
||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++.+.|+.++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL-KQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGE 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 9999999999999999999999999999999987755443 467999999999999876 79999999999999999988
Q ss_pred HHhc
Q 000674 805 LLLA 808 (1358)
Q Consensus 805 l~~~ 808 (1358)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14249 233 IFSR 236 (251)
T ss_pred HHhC
Confidence 8644
No 248
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-35 Score=335.57 Aligned_cols=206 Identities=23% Similarity=0.333 Sum_probs=168.8
Q ss_pred CCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC--------
Q 000674 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG-------- 658 (1358)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~-----~~~G~i~~~g-------- 658 (1358)
+..++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 19 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 95 (268)
T PRK14248 19 EHILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI 95 (268)
T ss_pred CceEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc
Confidence 346899999999963 469999999999999999999999999999999999864 6899998765
Q ss_pred -------eEEEEeCCCCCCCCCHHHHHhcCCCC----CH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChH
Q 000674 659 -------SIAYVSQTSWIQSGSIRDNILYGKPM----DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1358)
Q Consensus 659 -------~i~yv~Q~~~~~~~tv~eni~~g~~~----~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 723 (1358)
.++|++|++.+++.|++||+.++... .. ++..+.++.+++..++. ...+.++.+||||
T Consensus 96 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG 168 (268)
T PRK14248 96 NVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSGG 168 (268)
T ss_pred cHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCHH
Confidence 38999999998888999999875321 11 12233334443321111 2234678899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecCh
Q 000674 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1358)
Q Consensus 724 QkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1358)
||||++||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 169 q~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~ 247 (268)
T PRK14248 169 QQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITEL-KEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQT 247 (268)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHH-hcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999987755544 346899999999998865 899999999999999999
Q ss_pred HHHHhc
Q 000674 803 QELLLA 808 (1358)
Q Consensus 803 ~~l~~~ 808 (1358)
+++..+
T Consensus 248 ~~~~~~ 253 (268)
T PRK14248 248 EQIFTS 253 (268)
T ss_pred HHHHhC
Confidence 888654
No 249
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-35 Score=332.48 Aligned_cols=204 Identities=28% Similarity=0.380 Sum_probs=171.0
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~-----~~G~i~~~g---------- 658 (1358)
-++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 4789999999963 4699999999999999999999999999999999999875 799998865
Q ss_pred -----eEEEEeCCCCCCCCCHHHHHhcCCCC----CH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHH
Q 000674 659 -----SIAYVSQTSWIQSGSIRDNILYGKPM----DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1358)
Q Consensus 659 -----~i~yv~Q~~~~~~~tv~eni~~g~~~----~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 725 (1358)
.++|++|++.+++.|++||+.|+... +. ++..++++.+++..++.. ..+.++.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHHH
Confidence 28999999998889999999875321 11 234456666665433321 23357789999999
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHH
Q 000674 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1358)
Q Consensus 726 qRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1358)
||++||||++.+|+++||||||++||+.+.+++.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~-~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 232 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVEL-KKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEK 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHH
Confidence 9999999999999999999999999999999987755543 346899999999999876 89999999999999999998
Q ss_pred HHhc
Q 000674 805 LLLA 808 (1358)
Q Consensus 805 l~~~ 808 (1358)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14270 233 IFLE 236 (251)
T ss_pred HhcC
Confidence 8644
No 250
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=3.4e-35 Score=326.53 Aligned_cols=196 Identities=21% Similarity=0.302 Sum_probs=168.5
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------eEEEEeC
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------SIAYVSQ 665 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g---------~i~yv~Q 665 (1358)
++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|++|
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q 77 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIE 77 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcC
Confidence 468999999973 4699999999999999999999999999999999999999999999876 4899999
Q ss_pred CCCCC-CCCHHHHHhcCC---CCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEE
Q 000674 666 TSWIQ-SGSIRDNILYGK---PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741 (1358)
Q Consensus 666 ~~~~~-~~tv~eni~~g~---~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~il 741 (1358)
++.++ +.|++||+.++. ..++++..+.++..++.+..+ .++.+||||||||++||||++.+|+++
T Consensus 78 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rv~laral~~~p~ll 146 (223)
T TIGR03740 78 SPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGK-----------KKAKQFSLGMKQRLGIAIALLNHPKLL 146 (223)
T ss_pred CCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHh-----------hhHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 98765 479999997642 234556667777777754333 456789999999999999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHH
Q 000674 742 LFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1358)
Q Consensus 742 lLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1358)
||||||++||+.+.+.+.+.+.....+|+|+|++||+++++.. ||++++|++|++.+.|+.++
T Consensus 147 llDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 147 ILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999887665554568899999999999865 89999999999999988654
No 251
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=5.2e-35 Score=333.03 Aligned_cols=198 Identities=27% Similarity=0.435 Sum_probs=166.4
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEEcC------------
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYG------------ 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~---~G~i~~~g------------ 658 (1358)
.++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4789999999963 46999999999999999999999999999999999999986 49998776
Q ss_pred ------eEEEEeCCCCCCC-CCHHHHHhcCCC------------CC---HHHHHHHHHHhccHHHHhcCCCCCCccccCC
Q 000674 659 ------SIAYVSQTSWIQS-GSIRDNILYGKP------------MD---KARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1358)
Q Consensus 659 ------~i~yv~Q~~~~~~-~tv~eni~~g~~------------~~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~ 716 (1358)
.++|++|++.++. .|++||+.++.. .. +++..++++..++...+ ..+
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFA-----------HQR 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHH-----------hCC
Confidence 2799999987655 699999987531 01 12334455555554322 356
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCC
Q 000674 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGG 794 (1358)
Q Consensus 717 g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G 794 (1358)
+.+||||||||++||||++.+|+++||||||++||+++.+.+.+.+..... +|+|+|++||+++.+.. ||++++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 778999999999999999999999999999999999999998876655443 48999999999998765 8999999999
Q ss_pred eEEEecChHHH
Q 000674 795 QITQSGNYQEL 805 (1358)
Q Consensus 795 ~i~~~g~~~~l 805 (1358)
++.+.|+++++
T Consensus 230 ~i~~~g~~~~~ 240 (262)
T PRK09984 230 HVFYDGSSQQF 240 (262)
T ss_pred EEEEeCCHHHh
Confidence 99999999986
No 252
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-35 Score=341.60 Aligned_cols=207 Identities=20% Similarity=0.302 Sum_probs=172.1
Q ss_pred CcEEEEeeEEEeCCCC-------CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------
Q 000674 593 RSVKIQEGNFSWDPEL-------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------- 658 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~-------~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------- 658 (1358)
..++++|++++|+... ..++++||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 3589999999997421 24689999999999999999999999999999999999999999998876
Q ss_pred ---------eEEEEeCCCC--C-CCCCHHHHHhcCC----CCCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCC
Q 000674 659 ---------SIAYVSQTSW--I-QSGSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718 (1358)
Q Consensus 659 ---------~i~yv~Q~~~--~-~~~tv~eni~~g~----~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~ 718 (1358)
+|+||+|+|. + +..|+.+|+..+. .... ++..+.++.+++.++. ....+.
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~p~ 153 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEH----------YDRYPH 153 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHH----------hcCCCc
Confidence 4899999983 3 4569999986421 1222 3445556666664321 125678
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeE
Q 000674 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1358)
Q Consensus 719 ~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1358)
+|||||||||+||||++.+|+++|+||||++||+.+.+++++.+..... .|.|+|+||||++.+.. ||+|++|++|+|
T Consensus 154 ~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 154 MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRC 233 (327)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999887665544 48999999999999976 899999999999
Q ss_pred EEecChHHHHhcC
Q 000674 797 TQSGNYQELLLAG 809 (1358)
Q Consensus 797 ~~~g~~~~l~~~~ 809 (1358)
++.|+.+++.++.
T Consensus 234 ve~g~~~~~~~~p 246 (327)
T PRK11308 234 VEKGTKEQIFNNP 246 (327)
T ss_pred EEECCHHHHhcCC
Confidence 9999999998754
No 253
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-35 Score=331.95 Aligned_cols=204 Identities=29% Similarity=0.381 Sum_probs=168.5
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~-----~~G~i~~~g---------- 658 (1358)
.++++|++++|++ .++++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4789999999974 4699999999999999999999999999999999999974 799998876
Q ss_pred ---eEEEEeCCCCC-CCCCHHHHHhcCCCC-----CH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHH
Q 000674 659 ---SIAYVSQTSWI-QSGSIRDNILYGKPM-----DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1358)
Q Consensus 659 ---~i~yv~Q~~~~-~~~tv~eni~~g~~~-----~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 725 (1358)
.++|++|++.+ ++.|++||+.++... .. ++..+.++.+++.+.+. ......+.+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCcccCCHHHH
Confidence 38999999864 578999999875321 11 22334455555432111 123456789999999
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHH
Q 000674 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1358)
Q Consensus 726 qRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1358)
||++||||++++|++++|||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++.+.|++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLEL-KKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTRE 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHH
Confidence 9999999999999999999999999999999988766554 357999999999999865 89999999999999999998
Q ss_pred HHhc
Q 000674 805 LLLA 808 (1358)
Q Consensus 805 l~~~ 808 (1358)
+.+.
T Consensus 232 ~~~~ 235 (250)
T PRK14247 232 VFTN 235 (250)
T ss_pred HHcC
Confidence 8643
No 254
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-35 Score=331.56 Aligned_cols=204 Identities=27% Similarity=0.435 Sum_probs=169.1
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC----------
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG---------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~-----~~~G~i~~~g---------- 658 (1358)
.++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4889999999963 469999999999999999999999999999999999997 4799998766
Q ss_pred -----eEEEEeCCCCCCCCCHHHHHhcCCC---C-CH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHH
Q 000674 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1358)
Q Consensus 659 -----~i~yv~Q~~~~~~~tv~eni~~g~~---~-~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 725 (1358)
.++|++|++.+++.|++||+.++.. . ++ ++..++++.+++..+.. ...+.++.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK-------DNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchH-------HHhccChhhCCHHHH
Confidence 2899999999888999999987532 1 11 23344455544432111 112467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHH
Q 000674 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1358)
Q Consensus 726 qRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1358)
||++||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMEL-KHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEE 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHH-HcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999987765544 457899999999999876 89999999999999999988
Q ss_pred HHhc
Q 000674 805 LLLA 808 (1358)
Q Consensus 805 l~~~ 808 (1358)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14251 233 MFIA 236 (251)
T ss_pred HHhC
Confidence 8643
No 255
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-35 Score=331.40 Aligned_cols=194 Identities=26% Similarity=0.416 Sum_probs=163.6
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------eEEEEeCC
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQT 666 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------~i~yv~Q~ 666 (1358)
++++|+++.|+. .++++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| .++|++|+
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~ 78 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQN 78 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCC
Confidence 678999999963 4699999999999999999999999999999999999999999999977 38999999
Q ss_pred CCCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000674 667 SWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1358)
Q Consensus 667 ~~~~~-~tv~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~ 738 (1358)
+.++. .|++||+.++.. .. .++..+.++.+++...++ .++.+||||||||++||||++.+|
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qrl~laral~~~p 147 (255)
T PRK11248 79 EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEK-----------RYIWQLSGGQRQRVGIARALAANP 147 (255)
T ss_pred CccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhh-----------CChhhCCHHHHHHHHHHHHHhcCC
Confidence 87765 799999987521 22 123455566665543322 467789999999999999999999
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEe--CCeEEEecCh
Q 000674 739 DIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLE--GGQITQSGNY 802 (1358)
Q Consensus 739 ~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~--~G~i~~~g~~ 802 (1358)
+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+.. ||++++|+ +|++++.++.
T Consensus 148 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 148 QLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999998876655433 48999999999999876 89999998 5999987653
No 256
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=5.1e-35 Score=326.49 Aligned_cols=196 Identities=26% Similarity=0.403 Sum_probs=158.5
Q ss_pred EEEEeeEEEeCCCC-CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000674 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1358)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------- 658 (1358)
++++|++++|+... ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 67899999996421 12699999999999999999999999999999999999999999998865
Q ss_pred -eEEEEeCCCC--C-CCCCHHHHHhcCCC-----CCHHHHH----HHHHHhccHHHHhcCCCCCCccccCCCCCCChHHH
Q 000674 659 -SIAYVSQTSW--I-QSGSIRDNILYGKP-----MDKARYD----KAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1358)
Q Consensus 659 -~i~yv~Q~~~--~-~~~tv~eni~~g~~-----~~~~~~~----~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 725 (1358)
.++|++|++. + .+.|++||+.++.. .+.+..+ +.++..++.. .....++.+||||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~ 151 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE----------EVLNRYPHELSGGQR 151 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh----------hHhhCCchhcCHHHH
Confidence 3899999983 3 46899999976421 1111111 2233333311 123467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcC-CcEEEEEcCCcchhhc-cCeEEEEeCCeEEEec
Q 000674 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1358)
Q Consensus 726 qRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1358)
||++||||++++|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++.+.. ||++++|++|++++.|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999999999999988766554444 8999999999999875 8999999999998754
No 257
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-35 Score=331.16 Aligned_cols=204 Identities=28% Similarity=0.423 Sum_probs=168.9
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~-----~~G~i~~~g---------- 658 (1358)
.++++|+++.|+. .++++|+||++++||+++|+|+||||||||+++|+|..++ ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 3 KISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred eEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 5889999999973 3699999999999999999999999999999999998763 699998875
Q ss_pred -----eEEEEeCCCCCCCCCHHHHHhcCCC---C-C----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHH
Q 000674 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1358)
Q Consensus 659 -----~i~yv~Q~~~~~~~tv~eni~~g~~---~-~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 725 (1358)
.++|++|++.+++.|++||+.++.. . . .++..+.++.+++.+++. ...++++.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHHH
Confidence 3899999998877999999987632 1 1 122334444555433332 123467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHH
Q 000674 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1358)
Q Consensus 726 qRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1358)
||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQEL-KKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999987655444 457899999999998876 89999999999999999988
Q ss_pred HHhc
Q 000674 805 LLLA 808 (1358)
Q Consensus 805 l~~~ 808 (1358)
+...
T Consensus 232 ~~~~ 235 (250)
T PRK14240 232 LFTN 235 (250)
T ss_pred HHhC
Confidence 7643
No 258
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-35 Score=332.05 Aligned_cols=204 Identities=26% Similarity=0.398 Sum_probs=168.2
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCc--cC---CCcEEEEcC----------
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PK---ISGTVNLYG---------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~--~~---~~G~i~~~g---------- 658 (1358)
.++++|++++|+. +++++|+||++++||+++|+||||||||||+++|+|+. +| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 5889999999973 46999999999999999999999999999999999985 36 589998865
Q ss_pred -----eEEEEeCCCCCCCCCHHHHHhcCCC---C-CH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHH
Q 000674 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1358)
Q Consensus 659 -----~i~yv~Q~~~~~~~tv~eni~~g~~---~-~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 725 (1358)
.++|++|++.+++.|++||+.++.. . ++ ++..++++.+++...+. +..++++.+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHH
Confidence 3899999999888999999986521 1 11 22233444444432221 123467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHH
Q 000674 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1358)
Q Consensus 726 qRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1358)
||++||||++.+|+++||||||++||+.+.+.+++.+... .+++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGL-KDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQ 233 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHH-hhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999988765544 346899999999998765 89999999999999999999
Q ss_pred HHhc
Q 000674 805 LLLA 808 (1358)
Q Consensus 805 l~~~ 808 (1358)
+.++
T Consensus 234 ~~~~ 237 (252)
T PRK14239 234 MFMN 237 (252)
T ss_pred HHhC
Confidence 8654
No 259
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=3.9e-35 Score=325.84 Aligned_cols=190 Identities=24% Similarity=0.354 Sum_probs=159.5
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g---------------- 658 (1358)
++++|+++.|+. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 678999999952 24699999999999999999999999999999999999999999998876
Q ss_pred eEEEEeCCCCC-CCCCHHHHHhcCC---CCCHH----HHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000674 659 SIAYVSQTSWI-QSGSIRDNILYGK---PMDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1358)
Q Consensus 659 ~i~yv~Q~~~~-~~~tv~eni~~g~---~~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 730 (1358)
.++|++|++.+ ++.|++||+.++. ..+.+ +..+.++..++...+ .....+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKA-----------KNFPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCCchhCCHHHHHHHHH
Confidence 38999999875 6789999998753 12221 233444555554333 24567899999999999
Q ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEE
Q 000674 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1358)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1358)
|||++++|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++++.. ||++++|++|+++
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 999999999999999999999999999887665544468899999999999976 8999999999985
No 260
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-35 Score=344.47 Aligned_cols=198 Identities=28% Similarity=0.437 Sum_probs=168.9
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g---------------- 658 (1358)
+++ |++++|+. . .+ |+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 455 78888863 2 23 99999999999999999999999999999999999999998765
Q ss_pred -eEEEEeCCCCCC-CCCHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHh
Q 000674 659 -SIAYVSQTSWIQ-SGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1358)
Q Consensus 659 -~i~yv~Q~~~~~-~~tv~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~ 735 (1358)
.++|++|++.++ +.|++||+.++.. .+.++..++++.+++.+.++ .++.+|||||||||+||||++
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLD-----------RYPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhh-----------CCcccCCHHHHHHHHHHHHHH
Confidence 389999999876 5799999998743 23455666777776654433 456789999999999999999
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcC-CcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhcC
Q 000674 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1358)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1358)
.+|+++||||||++||+...+.+.+.+.....+ |+|+|+||||++.+.. ||++++|++|++.+.|+++++..+.
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 999999999999999999999988776554444 7899999999998765 8999999999999999999998664
No 261
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=4.7e-35 Score=329.95 Aligned_cols=199 Identities=22% Similarity=0.275 Sum_probs=162.3
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCc--cCCCcEEEEcCe-------------
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLYGS------------- 659 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~--~~~~G~i~~~g~------------- 659 (1358)
++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++|.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 468999999963 46999999999999999999999999999999999995 799999998761
Q ss_pred -EEEEeCCCCCCC-CCHHHHHhcCCC----------CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCC-CCCh
Q 000674 660 -IAYVSQTSWIQS-GSIRDNILYGKP----------MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGL-NLSG 722 (1358)
Q Consensus 660 -i~yv~Q~~~~~~-~tv~eni~~g~~----------~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~-~LSG 722 (1358)
++|++|++.++. .|++||+.+... .+. ++..++++..++..++ ...+.. +|||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~~LS~ 147 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF----------LNRSVNEGFSG 147 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh----------cccccccCcCH
Confidence 899999987654 699999976421 111 2233344444443221 113344 5999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc--cCeEEEEeCCeEEEec
Q 000674 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE--VDRILVLEGGQITQSG 800 (1358)
Q Consensus 723 GQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~--~d~i~~l~~G~i~~~g 800 (1358)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999887665554468999999999999875 7999999999999999
Q ss_pred ChHHHH
Q 000674 801 NYQELL 806 (1358)
Q Consensus 801 ~~~~l~ 806 (1358)
+++++.
T Consensus 228 ~~~~~~ 233 (243)
T TIGR01978 228 DVELAK 233 (243)
T ss_pred CHHHhc
Confidence 887653
No 262
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=8.1e-35 Score=331.90 Aligned_cols=206 Identities=19% Similarity=0.311 Sum_probs=170.0
Q ss_pred cEEEEeeEEEeCCC------CCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------
Q 000674 594 SVKIQEGNFSWDPE------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~------~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------- 658 (1358)
.++++|++++|+.. .+.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48899999999631 124699999999999999999999999999999999999999999999876
Q ss_pred ----eEEEEeCCCC--C-CCCCHHHHHhcCC----CCCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChH
Q 000674 659 ----SIAYVSQTSW--I-QSGSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1358)
Q Consensus 659 ----~i~yv~Q~~~--~-~~~tv~eni~~g~----~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 723 (1358)
.++|++|++. + .+.|+.+|+.++. .... ++..++++.+++..+.. .....+||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LS~G 153 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA----------SYYPHMLAPG 153 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHH----------hcCchhcCHH
Confidence 3899999984 3 3459999987532 1221 23445566666632221 1355789999
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecC
Q 000674 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1358)
Q Consensus 724 QkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1358)
||||++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999998876665444 38899999999999986 89999999999999999
Q ss_pred hHHHHhcC
Q 000674 802 YQELLLAG 809 (1358)
Q Consensus 802 ~~~l~~~~ 809 (1358)
++++....
T Consensus 234 ~~~~~~~~ 241 (267)
T PRK15112 234 TADVLASP 241 (267)
T ss_pred HHHHhcCC
Confidence 99987653
No 263
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=3.2e-35 Score=324.55 Aligned_cols=188 Identities=29% Similarity=0.433 Sum_probs=158.4
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------e
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g---------------~ 659 (1358)
++++|++++|+. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 468999999964 4699999999999999999999999999999999999999999998876 2
Q ss_pred EEEEeCCCCCCC-CCHHHHHhcCC----CCCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000674 660 IAYVSQTSWIQS-GSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1358)
Q Consensus 660 i~yv~Q~~~~~~-~tv~eni~~g~----~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 730 (1358)
++|++|++.++. .|++||+.++. ..+. ++..+.++.+++...+ ..+..+||||||||++|
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~l 146 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKA-----------DAYPAQLSGGQQQRVAI 146 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHh-----------hhCccccCHHHHHHHHH
Confidence 899999998764 79999998752 2222 2334445555554332 35667899999999999
Q ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeE
Q 000674 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1358)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1358)
|||++++|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999887666544468999999999999876 899999999975
No 264
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=9.9e-35 Score=327.33 Aligned_cols=199 Identities=26% Similarity=0.398 Sum_probs=171.7
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCCCCC
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQS 671 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--~i~yv~Q~~~~~~ 671 (1358)
.++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .++|++|++.++.
T Consensus 4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~ 80 (251)
T PRK09544 4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDT 80 (251)
T ss_pred EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEecccccccc
Confidence 4789999999973 4699999999999999999999999999999999999999999999987 5999999986643
Q ss_pred ---CCHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCC
Q 000674 672 ---GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFS 748 (1358)
Q Consensus 672 ---~tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep~s 748 (1358)
.|+++|+.+......++..++++.+++.+.++ .+..+||||||||++||||++.+|+++||||||+
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~ 149 (251)
T PRK09544 81 TLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLID-----------APMQKLSGGETQRVLLARALLNRPQLLVLDEPTQ 149 (251)
T ss_pred ccChhHHHHHhccccccHHHHHHHHHHcCChHHHh-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 48999987654445566777788887765443 4567899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhHhcC-CcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHh
Q 000674 749 AVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1358)
Q Consensus 749 ~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1358)
+||+.+.+.+++.+.....+ ++|+|++||+++.+.. ||++++|++ ++++.|+++++.+
T Consensus 150 ~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~ 209 (251)
T PRK09544 150 GVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL 209 (251)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC
Confidence 99999999988766554444 8999999999999865 899999965 7999999998864
No 265
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-35 Score=332.52 Aligned_cols=205 Identities=24% Similarity=0.374 Sum_probs=168.8
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC---------
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG--------- 658 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~-----~~~G~i~~~g--------- 658 (1358)
..++++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 23 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 23 VVFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred eEEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 36899999999973 369999999999999999999999999999999999987 6999998866
Q ss_pred ------eEEEEeCCCCCCCCCHHHHHhcCCC---C-CHHH----HHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHH
Q 000674 659 ------SIAYVSQTSWIQSGSIRDNILYGKP---M-DKAR----YDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1358)
Q Consensus 659 ------~i~yv~Q~~~~~~~tv~eni~~g~~---~-~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 724 (1358)
.++|++|++.++..|++||+.++.. . +++. ..+.++..++..++. ...++++.+|||||
T Consensus 100 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-------~~~~~~~~~LSgGe 172 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK-------DRLHDNAYGLSGGQ 172 (271)
T ss_pred HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHH-------HHHhcCcccCCHHH
Confidence 3899999999888899999987521 1 1111 122233332222222 12346788999999
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChH
Q 000674 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1358)
Q Consensus 725 kqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1358)
|||++||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++++.. ||++++|++|++++.|+++
T Consensus 173 ~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~ 251 (271)
T PRK14238 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQEL-KKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTD 251 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHH-HcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999988755443 447899999999999875 8999999999999999999
Q ss_pred HHHhc
Q 000674 804 ELLLA 808 (1358)
Q Consensus 804 ~l~~~ 808 (1358)
++..+
T Consensus 252 ~~~~~ 256 (271)
T PRK14238 252 KIFSN 256 (271)
T ss_pred HHHcC
Confidence 88644
No 266
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=5.4e-35 Score=309.00 Aligned_cols=162 Identities=26% Similarity=0.437 Sum_probs=146.4
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCCCCCC
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSG 672 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--~i~yv~Q~~~~~~~ 672 (1358)
++++|++++|+.+ +++|+|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++| +++|++|++.+++.
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~ 78 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLG 78 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccc
Confidence 4689999999643 4699999999999999999999999999999999999999999999987 79999999998889
Q ss_pred CHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Q 000674 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752 (1358)
Q Consensus 673 tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~ 752 (1358)
|++||+.++ ++.+||||||||++||||++++|++++|||||++||+
T Consensus 79 tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~ 124 (166)
T cd03223 79 TLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124 (166)
T ss_pred cHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCH
Confidence 999999864 2457999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCe
Q 000674 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1358)
Q Consensus 753 ~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~ 795 (1358)
++.+.+.+.+... ++|+|++||+.+....||++++|++|.
T Consensus 125 ~~~~~l~~~l~~~---~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 125 ESEDRLYQLLKEL---GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred HHHHHHHHHHHHh---CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 9999987755432 589999999998877799999998763
No 267
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-35 Score=331.04 Aligned_cols=204 Identities=27% Similarity=0.394 Sum_probs=170.7
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC----------
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG---------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~-----~~~G~i~~~g---------- 658 (1358)
.++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 5899999999963 369999999999999999999999999999999999976 4799998865
Q ss_pred -----eEEEEeCCCCCCCCCHHHHHhcCCCC---C---HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000674 659 -----SIAYVSQTSWIQSGSIRDNILYGKPM---D---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1358)
Q Consensus 659 -----~i~yv~Q~~~~~~~tv~eni~~g~~~---~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 727 (1358)
+++|++|++.+++.|++||+.++... . .++..++++.+++..++.. ..+.++.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHH
Confidence 38999999988878999999876421 1 1234445565666544331 1346788999999999
Q ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEe---------CCeEE
Q 000674 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLE---------GGQIT 797 (1358)
Q Consensus 728 v~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~---------~G~i~ 797 (1358)
++||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|+ +|+++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~ 238 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHEL-KEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLV 238 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 99999999999999999999999999999987765443 346899999999999876 89999998 89999
Q ss_pred EecChHHHHhc
Q 000674 798 QSGNYQELLLA 808 (1358)
Q Consensus 798 ~~g~~~~l~~~ 808 (1358)
+.|+.+++.+.
T Consensus 239 ~~~~~~~~~~~ 249 (264)
T PRK14243 239 EFDRTEKIFNS 249 (264)
T ss_pred EeCCHHHHHhC
Confidence 99999998654
No 268
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.5e-35 Score=339.76 Aligned_cols=208 Identities=20% Similarity=0.350 Sum_probs=169.4
Q ss_pred cEEEEeeEEEeCCCCC-CccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc----CCCcEEEEcC----------
Q 000674 594 SVKIQEGNFSWDPELA-IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP----KISGTVNLYG---------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~-~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~----~~~G~i~~~g---------- 658 (1358)
-++++|++++|+.... ..+|+||||+|++||+++|+|+||||||||+++|+|+++ +++|+|.++|
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3789999999975322 369999999999999999999999999999999999997 4899999877
Q ss_pred -------eEEEEeCCCC---CCCCCHHHHHhcC----CCCC----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCC
Q 000674 659 -------SIAYVSQTSW---IQSGSIRDNILYG----KPMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1358)
Q Consensus 659 -------~i~yv~Q~~~---~~~~tv~eni~~g----~~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~L 720 (1358)
.|+|++|+|. .+..|+.+++... .... .++..+.++..+|.+.. ...+..+.+|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA--------SRLDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhCCchhC
Confidence 2899999984 2456887776432 1112 23344555555553211 1234678899
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEE
Q 000674 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1358)
Q Consensus 721 SGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1358)
||||||||+||||++.+|+++|+||||++||+.+...+.+.+..... .|.|+|+||||++.+.. ||+|++|++|+|++
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999887665544 48999999999999865 89999999999999
Q ss_pred ecChHHHHhcC
Q 000674 799 SGNYQELLLAG 809 (1358)
Q Consensus 799 ~g~~~~l~~~~ 809 (1358)
.|+.+++.++.
T Consensus 235 ~g~~~~~~~~p 245 (326)
T PRK11022 235 TGKAHDIFRAP 245 (326)
T ss_pred ECCHHHHhhCC
Confidence 99999998654
No 269
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-34 Score=331.94 Aligned_cols=207 Identities=24% Similarity=0.386 Sum_probs=171.3
Q ss_pred CCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC-------
Q 000674 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG------- 658 (1358)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~-----~~G~i~~~g------- 658 (1358)
....++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.++ ++|+|.++|
T Consensus 22 ~~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~ 98 (272)
T PRK14236 22 EQTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK 98 (272)
T ss_pred CCcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccc
Confidence 3456999999999963 3699999999999999999999999999999999999874 899998765
Q ss_pred --------eEEEEeCCCCCCCCCHHHHHhcCCC---C-C----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCCh
Q 000674 659 --------SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1358)
Q Consensus 659 --------~i~yv~Q~~~~~~~tv~eni~~g~~---~-~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSG 722 (1358)
.++|++|++.+++.|++||+.++.. . . +++..++++..++.+++. +..++++.+|||
T Consensus 99 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~ 171 (272)
T PRK14236 99 VDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSG 171 (272)
T ss_pred cCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCH
Confidence 4899999998887899999987522 1 1 122344445545543322 234577889999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecC
Q 000674 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1358)
Q Consensus 723 GQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1358)
|||||++||||++++|++++|||||++||+.+.+.+.+.+.... +++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 172 Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~-~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~ 250 (272)
T PRK14236 172 GQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELK-SKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGD 250 (272)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999998877655443 47899999999999865 89999999999999999
Q ss_pred hHHHHhc
Q 000674 802 YQELLLA 808 (1358)
Q Consensus 802 ~~~l~~~ 808 (1358)
++++...
T Consensus 251 ~~~~~~~ 257 (272)
T PRK14236 251 TDTLFTS 257 (272)
T ss_pred HHHHhcC
Confidence 9887643
No 270
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=5.2e-35 Score=311.65 Aligned_cols=160 Identities=38% Similarity=0.598 Sum_probs=146.6
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~i~ 661 (1358)
++++|++++|+.. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4689999999743 24699999999999999999999999999999999999999999999876 389
Q ss_pred EEeCCCCCCCCCHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEE
Q 000674 662 YVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741 (1358)
Q Consensus 662 yv~Q~~~~~~~tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~il 741 (1358)
|++|++++++.|++||+ ||||||||++||||++++|+++
T Consensus 80 ~~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~l 118 (173)
T cd03246 80 YLPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRIL 118 (173)
T ss_pred EECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 99999998888999998 9999999999999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeE
Q 000674 742 LFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1358)
Q Consensus 742 lLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i 796 (1358)
||||||++||+++.+.+.+.+.....+|+|+|++||+++.+..||++++|++|++
T Consensus 119 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 119 VLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 9999999999999999988765554568999999999999877999999999974
No 271
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.1e-34 Score=325.28 Aligned_cols=199 Identities=33% Similarity=0.441 Sum_probs=167.7
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-----------~i~yv 663 (1358)
++++|++++|+. +++|+|+||++.+||+++|+|+||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~ 77 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFV 77 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEE
Confidence 468999999974 3699999999999999999999999999999999999999999998875 48999
Q ss_pred eCCCCCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHh
Q 000674 664 SQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1358)
Q Consensus 664 ~Q~~~~~~-~tv~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~ 735 (1358)
||+|.++. .|++||+.++.. .+ .++..+.++..++.... .....+||||||||++||||++
T Consensus 78 ~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lS~G~~qrl~laral~ 146 (237)
T TIGR00968 78 FQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLG-----------DRYPNQLSGGQRQRVALARALA 146 (237)
T ss_pred ecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHh-----------hCChhhCCHHHHHHHHHHHHHh
Confidence 99998775 599999987642 12 12233444444443322 2456789999999999999999
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcC-CcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHh
Q 000674 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1358)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1358)
++|++++|||||++||+++.+.+.+.+.....+ ++|+|++||+++.+.. ||++++|++|++++.|+.+++.+
T Consensus 147 ~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 147 VEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 999999999999999999999988766554444 7999999999999876 89999999999999999988864
No 272
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-35 Score=329.91 Aligned_cols=204 Identities=26% Similarity=0.369 Sum_probs=167.5
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~-----~~G~i~~~g---------- 658 (1358)
.++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4789999999964 4699999999999999999999999999999999999987 499998865
Q ss_pred -----eEEEEeCCCCCCC-CCHHHHHhcCCC---C--CHH----HHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChH
Q 000674 659 -----SIAYVSQTSWIQS-GSIRDNILYGKP---M--DKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1358)
Q Consensus 659 -----~i~yv~Q~~~~~~-~tv~eni~~g~~---~--~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 723 (1358)
.++|++|++.++. .|++||+.++.. . ..+ +..++++..++...+. .....++.+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccChhhCCHH
Confidence 3899999998765 599999987521 1 121 2233344444332221 1234677899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecCh
Q 000674 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1358)
Q Consensus 724 QkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1358)
||||++||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 232 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL-KKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPT 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999988766554 346899999999999865 899999999999999999
Q ss_pred HHHHhc
Q 000674 803 QELLLA 808 (1358)
Q Consensus 803 ~~l~~~ 808 (1358)
+++.+.
T Consensus 233 ~~~~~~ 238 (253)
T PRK14267 233 RKVFEN 238 (253)
T ss_pred HHHHhC
Confidence 988644
No 273
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-35 Score=330.15 Aligned_cols=203 Identities=27% Similarity=0.404 Sum_probs=166.9
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC-----------
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG----------- 658 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~-----~~~G~i~~~g----------- 658 (1358)
-+++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 468899999963 469999999999999999999999999999999999986 4799998865
Q ss_pred ----eEEEEeCCCCCCCCCHHHHHhcCCC---C--CHH----HHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHH
Q 000674 659 ----SIAYVSQTSWIQSGSIRDNILYGKP---M--DKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1358)
Q Consensus 659 ----~i~yv~Q~~~~~~~tv~eni~~g~~---~--~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 725 (1358)
.++|++|++.+++.|++||+.++.. . +.+ +..++++..++.+++. +.++.++.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHH
Confidence 3899999998887899999987521 1 111 2233444444432211 123467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHH
Q 000674 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1358)
Q Consensus 726 qRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1358)
||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQEL-KKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQE 234 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999887655444 458999999999999876 89999999999999999988
Q ss_pred HHhc
Q 000674 805 LLLA 808 (1358)
Q Consensus 805 l~~~ 808 (1358)
+.+.
T Consensus 235 ~~~~ 238 (251)
T PRK14244 235 IFKN 238 (251)
T ss_pred HhcC
Confidence 8654
No 274
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-35 Score=329.02 Aligned_cols=204 Identities=26% Similarity=0.381 Sum_probs=168.2
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~-----~~G~i~~~g---------- 658 (1358)
.++++|+++.|++ .++++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4789999999963 4699999999999999999999999999999999999874 899998865
Q ss_pred -----eEEEEeCCCCCCCCCHHHHHhcCCC---C-CHH----HHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHH
Q 000674 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-DKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1358)
Q Consensus 659 -----~i~yv~Q~~~~~~~tv~eni~~g~~---~-~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 725 (1358)
.++|++|++.++..|++||+.++.. . ..+ +..+.++..++..+++ ...++++.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHH
Confidence 3899999998888999999987521 1 111 2233344444433221 123467889999999
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHH
Q 000674 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1358)
Q Consensus 726 qRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1358)
||++||||++.+|++++|||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEEL-SENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTRE 231 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHH-hcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999999987665544 357899999999998765 89999999999999999988
Q ss_pred HHhc
Q 000674 805 LLLA 808 (1358)
Q Consensus 805 l~~~ 808 (1358)
+.+.
T Consensus 232 ~~~~ 235 (250)
T PRK14262 232 IVER 235 (250)
T ss_pred HHhC
Confidence 8643
No 275
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.4e-34 Score=319.23 Aligned_cols=190 Identities=25% Similarity=0.419 Sum_probs=161.1
Q ss_pred EEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEEe
Q 000674 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYVS 664 (1358)
Q Consensus 596 ~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-----------~i~yv~ 664 (1358)
+++|+++.|+. .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++
T Consensus 2 ~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~ 76 (213)
T TIGR01277 2 ALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLF 76 (213)
T ss_pred eEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEe
Confidence 68899999962 46799999999999999999999999999999999999999999876 389999
Q ss_pred CCCCCCC-CCHHHHHhcCC-C-C-----CHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhc
Q 000674 665 QTSWIQS-GSIRDNILYGK-P-M-----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN 736 (1358)
Q Consensus 665 Q~~~~~~-~tv~eni~~g~-~-~-----~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~ 736 (1358)
|+|.++. .|++||+.++. + . ++++..++++..++.+..+ ....+||||||||++||||++.
T Consensus 77 q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~laral~~ 145 (213)
T TIGR01277 77 QENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLD-----------RLPEQLSGGQRQRVALARCLVR 145 (213)
T ss_pred ccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhh-----------CCcccCCHHHHHHHHHHHHHhc
Confidence 9998765 69999998642 1 1 1234555666666654433 4456899999999999999999
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecC
Q 000674 737 DADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1358)
Q Consensus 737 ~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1358)
+|++++|||||++||+.+.+.+++.+..... .++|+|++||+.+.+.. ||++++|++|++.+.|.
T Consensus 146 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 146 PNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999998876665444 37899999999999875 89999999999998774
No 276
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=1.3e-34 Score=328.98 Aligned_cols=206 Identities=21% Similarity=0.286 Sum_probs=165.5
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------- 658 (1358)
.++++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 5899999999964 4699999999999999999999999999999999999999999998765
Q ss_pred -------eEEEEeCCCC---CCCCCHHHHHhcCC----CCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHH
Q 000674 659 -------SIAYVSQTSW---IQSGSIRDNILYGK----PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1358)
Q Consensus 659 -------~i~yv~Q~~~---~~~~tv~eni~~g~----~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 724 (1358)
.++|++|++. ..+.|+.||+.+.. ..+.....+. ..+.++.++.++ +..++++.+|||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~-~~~~~~~~~LS~Gq 156 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRAT-----AGDWLERVEIDA-ARIDDLPTTFSGGM 156 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHH-----HHHHHHHcCCCh-hHHhCCCccCCHHH
Confidence 2899999984 23568999986421 1111111110 112233333221 23457788999999
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecCh
Q 000674 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1358)
Q Consensus 725 kqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1358)
|||++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++++.. ||++++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~ 236 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLT 236 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999998876654433 38899999999999975 899999999999999999
Q ss_pred HHHHhc
Q 000674 803 QELLLA 808 (1358)
Q Consensus 803 ~~l~~~ 808 (1358)
+++..+
T Consensus 237 ~~~~~~ 242 (258)
T PRK11701 237 DQVLDD 242 (258)
T ss_pred HHHhcC
Confidence 988644
No 277
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.3e-35 Score=325.24 Aligned_cols=200 Identities=30% Similarity=0.408 Sum_probs=169.2
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-----------~i~yv 663 (1358)
+.++|++++|+. +++++|+||++++||+++|+|+||||||||+++|+|+++|.+|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTV 77 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEE
Confidence 468999999974 3699999999999999999999999999999999999999999999876 48999
Q ss_pred eCCCCCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHh
Q 000674 664 SQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1358)
Q Consensus 664 ~Q~~~~~~-~tv~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~ 735 (1358)
+|++.++. .|++||+.++.. .+ ++++.++++..++.+.++ ....+||||||||++||||++
T Consensus 78 ~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qrl~laral~ 146 (232)
T cd03300 78 FQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYAN-----------RKPSQLSGGQQQRVAIARALV 146 (232)
T ss_pred ecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHHHHh
Confidence 99998774 699999986521 12 234445555555544333 456789999999999999999
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhc
Q 000674 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1358)
++|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++.+.|+.+++...
T Consensus 147 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 147 NEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 99999999999999999999998876655443 38999999999999876 899999999999999998887643
No 278
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.9e-36 Score=305.71 Aligned_cols=208 Identities=22% Similarity=0.353 Sum_probs=169.4
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------~ 659 (1358)
.+..+|...+|.. +++.+|+||++++||+|++.||||+||||.+.++.|+.+|++|+|.+++ .
T Consensus 4 ~L~a~~l~K~y~k---r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 4 TLVAENLAKSYKK---RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred EEEehhhhHhhCC---eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 4667888889974 5799999999999999999999999999999999999999999999987 3
Q ss_pred EEEEeCCCCCCC-CCHHHHHhcCCCCCH---HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHh
Q 000674 660 IAYVSQTSWIQS-GSIRDNILYGKPMDK---ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1358)
Q Consensus 660 i~yv~Q~~~~~~-~tv~eni~~g~~~~~---~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~ 735 (1358)
|||+||+|.+|. .||+|||..-.++.+ +.-++-.+..+|.+++..- ..-..++.+||||||+|+.|||||.
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~-----hlr~~~a~sLSGGERRR~EIARaLa 155 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHIT-----HLRDSKAYSLSGGERRRVEIARALA 155 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchH-----HHhcCcccccccchHHHHHHHHHHh
Confidence 999999999985 599999986433221 1111111112232222211 1123678999999999999999999
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcch-hhccCeEEEEeCCeEEEecChHHHHhcC
Q 000674 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQELLLAG 809 (1358)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~-l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1358)
.+|+.+||||||+++||.....|-+.+.....+|-.|+++-|++.. +.-|||.+++.+|++..+|+++|+.+++
T Consensus 156 ~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 156 ANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred cCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 9999999999999999999999866555556678899999999865 7779999999999999999999998654
No 279
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-34 Score=327.46 Aligned_cols=205 Identities=24% Similarity=0.369 Sum_probs=169.3
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc--C---CCcEEEEcC---------
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--K---ISGTVNLYG--------- 658 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~--~---~~G~i~~~g--------- 658 (1358)
+.++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ | ++|+|.++|
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 46899999999973 469999999999999999999999999999999999986 4 689998876
Q ss_pred ------eEEEEeCCCCCCC-CCHHHHHhcCCC----CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChH
Q 000674 659 ------SIAYVSQTSWIQS-GSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1358)
Q Consensus 659 ------~i~yv~Q~~~~~~-~tv~eni~~g~~----~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 723 (1358)
.++|++|++.++. .|++||+.++.. .+. ++..+.++.+++...+.. ..+..+.+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcCcCCHH
Confidence 2899999998766 699999986421 121 234455555555432221 123567899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecCh
Q 000674 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1358)
Q Consensus 724 QkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1358)
||||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++.+.|+.
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~-~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 231 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEEL-KEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGET 231 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-HhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999987765443 356899999999999865 899999999999999999
Q ss_pred HHHHhc
Q 000674 803 QELLLA 808 (1358)
Q Consensus 803 ~~l~~~ 808 (1358)
+++...
T Consensus 232 ~~~~~~ 237 (252)
T PRK14256 232 KKIFTT 237 (252)
T ss_pred HHHHhC
Confidence 988654
No 280
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-34 Score=323.71 Aligned_cols=199 Identities=31% Similarity=0.454 Sum_probs=169.1
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-----------~i~yv 663 (1358)
++++|+++.|+. ++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~ 76 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYV 76 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEE
Confidence 468899999963 279999999999999999999999999999999999999999999987 48999
Q ss_pred eCCCCCC-CCCHHHHHhcCCCC---C----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHh
Q 000674 664 SQTSWIQ-SGSIRDNILYGKPM---D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1358)
Q Consensus 664 ~Q~~~~~-~~tv~eni~~g~~~---~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~ 735 (1358)
+|++.++ ..|++||+.++... + .++..+.++.+++...++ +++.+||||||||++||||++
T Consensus 77 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~laral~ 145 (235)
T cd03299 77 PQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLN-----------RKPETLSGGEQQRVAIARALV 145 (235)
T ss_pred eecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHh-----------cCcccCCHHHHHHHHHHHHHH
Confidence 9998876 57999999875321 1 123345566666654443 456789999999999999999
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhc
Q 000674 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1358)
++|++++|||||++||+.+.+++.+.+..... .++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 146 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 146 VNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 99999999999999999999998876655433 38999999999999876 899999999999999999887654
No 281
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=327.20 Aligned_cols=203 Identities=25% Similarity=0.381 Sum_probs=168.3
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~-----~~G~i~~~g---------- 658 (1358)
.++++|+++.|+. +++|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4789999999973 4699999999999999999999999999999999999986 599998866
Q ss_pred ----eEEEEeCCCCCCCCCHHHHHhcCCC---CC-H----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHH
Q 000674 659 ----SIAYVSQTSWIQSGSIRDNILYGKP---MD-K----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1358)
Q Consensus 659 ----~i~yv~Q~~~~~~~tv~eni~~g~~---~~-~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 726 (1358)
.++|++|++.++..|++||+.++.. .. + ++..+.++..++.+++. ....+++.+|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHH
Confidence 2899999998888999999987532 11 1 12233444444443332 1234677899999999
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHH
Q 000674 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1358)
Q Consensus 727 Rv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1358)
||+||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+.+++
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEEL-KKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999987755443 346899999999999876 899999999999999998887
Q ss_pred Hh
Q 000674 806 LL 807 (1358)
Q Consensus 806 ~~ 807 (1358)
..
T Consensus 232 ~~ 233 (249)
T PRK14253 232 FS 233 (249)
T ss_pred Hc
Confidence 53
No 282
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-34 Score=339.20 Aligned_cols=208 Identities=19% Similarity=0.293 Sum_probs=169.8
Q ss_pred cEEEEeeEEEeCCCC-CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc----CCCcEEEEcC----------
Q 000674 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP----KISGTVNLYG---------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~----~~~G~i~~~g---------- 658 (1358)
.++++|++++|+... ...+++|+||+|++||+++|+|+||||||||+++|+|+.+ +++|+|.++|
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 478999999996432 3469999999999999999999999999999999999986 5899999876
Q ss_pred -------eEEEEeCCCCC---CCCCHHHHHhcCC---CC------C----HHHHHHHHHHhccHHHHhcCCCCCCccccC
Q 000674 659 -------SIAYVSQTSWI---QSGSIRDNILYGK---PM------D----KARYDKAIKACALDKDINNFDHGDLTEIGQ 715 (1358)
Q Consensus 659 -------~i~yv~Q~~~~---~~~tv~eni~~g~---~~------~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~ 715 (1358)
.|+||+|+|.. +..||.+|+.... .. + .++..+.++..+|.+..+ ...+
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--------~~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--------AMRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--------HHhC
Confidence 39999999862 3569999996421 00 1 123445555555542111 1235
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeC
Q 000674 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEG 793 (1358)
Q Consensus 716 ~g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~ 793 (1358)
.+.+|||||||||+||||++.+|+++|+||||++||+.+.+++.+.+..... .|.|+|+||||++.+.. ||+|++|++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 6789999999999999999999999999999999999999999887665544 48999999999999976 899999999
Q ss_pred CeEEEecChHHHHhcC
Q 000674 794 GQITQSGNYQELLLAG 809 (1358)
Q Consensus 794 G~i~~~g~~~~l~~~~ 809 (1358)
|+|++.|+.+++..+.
T Consensus 235 G~ive~g~~~~i~~~p 250 (330)
T PRK15093 235 GQTVETAPSKELVTTP 250 (330)
T ss_pred CEEEEECCHHHHHhCC
Confidence 9999999999987653
No 283
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-34 Score=326.99 Aligned_cols=204 Identities=25% Similarity=0.345 Sum_probs=168.3
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~-----~~G~i~~~g---------- 658 (1358)
.++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+.++ ++|+|.++|
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 5899999999963 4699999999999999999999999999999999998753 489998765
Q ss_pred -----eEEEEeCCCCCCCCCHHHHHhcCCCC----CHH----HHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHH
Q 000674 659 -----SIAYVSQTSWIQSGSIRDNILYGKPM----DKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1358)
Q Consensus 659 -----~i~yv~Q~~~~~~~tv~eni~~g~~~----~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 725 (1358)
.++|++|++.+++.|++||+.++... +.. +..++++..++.+++. +..++++.+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK-------DRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhH-------HHhhcChhhCCHHHH
Confidence 38999999988888999999986321 111 2233344444432222 234577889999999
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHH
Q 000674 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1358)
Q Consensus 726 qRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1358)
||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~-~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDL-KKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQ 234 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHH
Confidence 9999999999999999999999999999999987655443 346899999999999875 89999999999999999988
Q ss_pred HHhc
Q 000674 805 LLLA 808 (1358)
Q Consensus 805 l~~~ 808 (1358)
+...
T Consensus 235 ~~~~ 238 (253)
T PRK14261 235 IFEN 238 (253)
T ss_pred HHhC
Confidence 8643
No 284
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-34 Score=329.90 Aligned_cols=200 Identities=26% Similarity=0.418 Sum_probs=166.4
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------eEEEE
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAYV 663 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g----------~i~yv 663 (1358)
.++++|++++|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 6 ~l~~~~l~~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v 83 (272)
T PRK15056 6 GIVVNDVTVTWRN--GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYV 83 (272)
T ss_pred eEEEEeEEEEecC--CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEe
Confidence 5899999999963 24699999999999999999999999999999999999999999999887 39999
Q ss_pred eCCCCC---CCCCHHHHHhcCCC--------C---CHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000674 664 SQTSWI---QSGSIRDNILYGKP--------M---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1358)
Q Consensus 664 ~Q~~~~---~~~tv~eni~~g~~--------~---~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 729 (1358)
+|++.+ ...++++|+.++.. . ++++..++++..++.... ..+..+||||||||++
T Consensus 84 ~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgG~~qrv~ 152 (272)
T PRK15056 84 PQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFR-----------HRQIGELSGGQKKRVF 152 (272)
T ss_pred ccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHh-----------cCCcccCCHHHHHHHH
Confidence 999854 34578999875421 0 122344555656654432 2456789999999999
Q ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHh
Q 000674 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1358)
Q Consensus 730 LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1358)
||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+++++ +|++++.|+++++..
T Consensus 153 laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 153 LARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTFT 230 (272)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhccC
Confidence 9999999999999999999999999999887665544568999999999998765 8999777 899999999988753
No 285
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-34 Score=328.00 Aligned_cols=205 Identities=27% Similarity=0.406 Sum_probs=171.7
Q ss_pred CCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC--------
Q 000674 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG-------- 658 (1358)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~-----~~G~i~~~g-------- 658 (1358)
.+.|+++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 346899999999973 3699999999999999999999999999999999999875 799998754
Q ss_pred ---------eEEEEeCCCCCCCCCHHHHHhcCCC---CC-----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCC
Q 000674 659 ---------SIAYVSQTSWIQSGSIRDNILYGKP---MD-----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1358)
Q Consensus 659 ---------~i~yv~Q~~~~~~~tv~eni~~g~~---~~-----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 721 (1358)
.++|++|++.++..|++||+.++.. .. +++..++++.+++.+++. +..++.+.+||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCcccCC
Confidence 3899999999888899999987531 11 234455555565543332 22346788999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEec
Q 000674 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1358)
Q Consensus 722 GGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1358)
||||||++||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|+|||+++.+.. ||++++|++|++++.|
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l-~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g 242 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDL-KNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFG 242 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-HhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999987765544 346899999999999875 8999999999999999
Q ss_pred ChHHHHh
Q 000674 801 NYQELLL 807 (1358)
Q Consensus 801 ~~~~l~~ 807 (1358)
+.+++..
T Consensus 243 ~~~~~~~ 249 (265)
T PRK14252 243 ATDTIFI 249 (265)
T ss_pred CHHHHHh
Confidence 9988764
No 286
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-34 Score=331.53 Aligned_cols=206 Identities=29% Similarity=0.454 Sum_probs=169.1
Q ss_pred CCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC--------
Q 000674 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG-------- 658 (1358)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~-----~~~G~i~~~g-------- 658 (1358)
+..++++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 37 ~~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~ 113 (285)
T PRK14254 37 ETVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113 (285)
T ss_pred CceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 345899999999963 469999999999999999999999999999999999987 6899998865
Q ss_pred -------eEEEEeCCCCCCCCCHHHHHhcCCC---CC---HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHH
Q 000674 659 -------SIAYVSQTSWIQSGSIRDNILYGKP---MD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1358)
Q Consensus 659 -------~i~yv~Q~~~~~~~tv~eni~~g~~---~~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 725 (1358)
.++|++|++.++..|++||+.++.. .. .++.++.++..++...+.. ..++++.+||||||
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LSgGe~ 186 (285)
T PRK14254 114 DPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-------QLDSSGLDLSGGQQ 186 (285)
T ss_pred chHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH-------HHhCCcccCCHHHH
Confidence 3899999998877899999987521 11 2334445555554322211 23467889999999
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEE-EEeCCeEEEecChH
Q 000674 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRIL-VLEGGQITQSGNYQ 803 (1358)
Q Consensus 726 qRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~-~l~~G~i~~~g~~~ 803 (1358)
||++||||++++|+++||||||++||+.+.+.+.+.+.... +++|+|++||+++.+.. ||+++ +|++|++++.|+++
T Consensus 187 qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~-~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~ 265 (285)
T PRK14254 187 QRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA-EEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTD 265 (285)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHH
Confidence 99999999999999999999999999999999877655443 45899999999999876 89975 57999999999988
Q ss_pred HHHhc
Q 000674 804 ELLLA 808 (1358)
Q Consensus 804 ~l~~~ 808 (1358)
++..+
T Consensus 266 ~~~~~ 270 (285)
T PRK14254 266 KIFEN 270 (285)
T ss_pred HHHhC
Confidence 87643
No 287
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-34 Score=331.96 Aligned_cols=206 Identities=28% Similarity=0.376 Sum_probs=168.2
Q ss_pred CCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC--------
Q 000674 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG-------- 658 (1358)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~-----~~~G~i~~~g-------- 658 (1358)
+..++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|.|+.+ |++|+|.++|
T Consensus 37 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~ 113 (286)
T PRK14275 37 KPHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT 113 (286)
T ss_pred ceEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhccc
Confidence 346899999999963 359999999999999999999999999999999999864 4999998865
Q ss_pred -------eEEEEeCCCCCCCCCHHHHHhcCCC---C-CHH----HHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChH
Q 000674 659 -------SIAYVSQTSWIQSGSIRDNILYGKP---M-DKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1358)
Q Consensus 659 -------~i~yv~Q~~~~~~~tv~eni~~g~~---~-~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 723 (1358)
.++|++|++.++..|++||+.++.. . +.+ +..+.++..++...+. ....+++.+||||
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgG 186 (286)
T PRK14275 114 DEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS-------DRLDKNALGLSGG 186 (286)
T ss_pred chHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh-------hHhhCChhhCCHH
Confidence 3899999998887899999987632 1 111 2223334444321111 1224677899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecCh
Q 000674 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1358)
Q Consensus 724 QkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1358)
||||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 187 q~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~-~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~ 265 (286)
T PRK14275 187 QQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQEL-RGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPT 265 (286)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999988755443 346899999999999876 899999999999999999
Q ss_pred HHHHhc
Q 000674 803 QELLLA 808 (1358)
Q Consensus 803 ~~l~~~ 808 (1358)
+++.+.
T Consensus 266 ~~~~~~ 271 (286)
T PRK14275 266 AQLFTN 271 (286)
T ss_pred HHHHhC
Confidence 988654
No 288
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-34 Score=327.82 Aligned_cols=199 Identities=26% Similarity=0.348 Sum_probs=167.5
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCC--------CcEEEEcC--------
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI--------SGTVNLYG-------- 658 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~--------~G~i~~~g-------- 658 (1358)
++++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 678999999963 46999999999999999999999999999999999999998 99999977
Q ss_pred -----eEEEEeCCCC-CCCCCHHHHHhcCCC-C-------C---HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCC
Q 000674 659 -----SIAYVSQTSW-IQSGSIRDNILYGKP-M-------D---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1358)
Q Consensus 659 -----~i~yv~Q~~~-~~~~tv~eni~~g~~-~-------~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 721 (1358)
.++|++|++. ++..|++||+.++.. . . .++.+++++..++.. ..+..+.+||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATA-----------LVGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHh-----------hhcCCcccCC
Confidence 2799999975 567899999987531 1 1 123344444554432 2346778999
Q ss_pred hHHHHHHHHHHHHh---------cCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcC-CcEEEEEcCCcchhhc-cCeEEE
Q 000674 722 GGQKQRIQLARAVY---------NDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILV 790 (1358)
Q Consensus 722 GGQkqRv~LARal~---------~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~ 790 (1358)
|||||||+||||++ .+|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++.+.. ||++++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999 599999999999999999999998766654444 8999999999999865 899999
Q ss_pred EeCCeEEEecChHHHHh
Q 000674 791 LEGGQITQSGNYQELLL 807 (1358)
Q Consensus 791 l~~G~i~~~g~~~~l~~ 807 (1358)
|++|++++.|+.+++..
T Consensus 228 l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 228 LADGAIVAHGAPADVLT 244 (272)
T ss_pred EECCeEEEecCHHHHcC
Confidence 99999999999988854
No 289
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-34 Score=325.11 Aligned_cols=208 Identities=21% Similarity=0.279 Sum_probs=171.4
Q ss_pred CcEEEEeeEEEeCCC-----------------CCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEE
Q 000674 593 RSVKIQEGNFSWDPE-----------------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~-----------------~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~ 655 (1358)
.+|+++|++..|... ...++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~ 82 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD 82 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence 357788887777642 234689999999999999999999999999999999999999999999
Q ss_pred EcCeEEEEeCCCCCC-CCCHHHHHhcCC---CCCHHHHH----HHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000674 656 LYGSIAYVSQTSWIQ-SGSIRDNILYGK---PMDKARYD----KAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1358)
Q Consensus 656 ~~g~i~yv~Q~~~~~-~~tv~eni~~g~---~~~~~~~~----~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 727 (1358)
++|.+++++|++.+. ..|++||+.++. .++.+... ++++..++.+. +...+.+||||||||
T Consensus 83 ~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Gq~qr 151 (264)
T PRK13546 83 RNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEF-----------IYQPVKKYSSGMRAK 151 (264)
T ss_pred ECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hcCCcccCCHHHHHH
Confidence 999999999998765 579999997642 23333222 23333333322 235678999999999
Q ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHH
Q 000674 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806 (1358)
Q Consensus 728 v~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 806 (1358)
++||||++++|+++||||||++||+...+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++.+.|+++++.
T Consensus 152 v~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (264)
T PRK13546 152 LGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVL 231 (264)
T ss_pred HHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999887765554568999999999999876 8999999999999999999988
Q ss_pred hcCch
Q 000674 807 LAGTA 811 (1358)
Q Consensus 807 ~~~~~ 811 (1358)
.....
T Consensus 232 ~~~~~ 236 (264)
T PRK13546 232 PKYEA 236 (264)
T ss_pred HHhHH
Confidence 65433
No 290
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=4.1e-34 Score=323.99 Aligned_cols=204 Identities=25% Similarity=0.394 Sum_probs=169.7
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC----CCcEEEEcC-----------
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK----ISGTVNLYG----------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~----~~G~i~~~g----------- 658 (1358)
.++++|++++| . .++|+|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 79 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGR 79 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccc
Confidence 58899999999 2 3699999999999999999999999999999999999999 999999876
Q ss_pred eEEEEeCCCC-CC--CCCHHHHHhc-----CCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000674 659 SIAYVSQTSW-IQ--SGSIRDNILY-----GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1358)
Q Consensus 659 ~i~yv~Q~~~-~~--~~tv~eni~~-----g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 730 (1358)
.++|++|++. .+ ..|+.+|+.+ +...++++..+.++.+++... .+.+++.+.+||||||||++|
T Consensus 80 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv~l 151 (254)
T PRK10418 80 KIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRMMI 151 (254)
T ss_pred eEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHHHH
Confidence 3999999984 33 3688888754 322233455666666655321 123456788999999999999
Q ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhc
Q 000674 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1358)
|||++.+|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++.+.. ||++++|++|++++.|+.+++.+.
T Consensus 152 aral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 231 (254)
T PRK10418 152 ALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNA 231 (254)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 9999999999999999999999999998876655433 47899999999999865 899999999999999999998754
Q ss_pred C
Q 000674 809 G 809 (1358)
Q Consensus 809 ~ 809 (1358)
.
T Consensus 232 ~ 232 (254)
T PRK10418 232 P 232 (254)
T ss_pred C
Confidence 3
No 291
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.7e-34 Score=336.97 Aligned_cols=210 Identities=18% Similarity=0.361 Sum_probs=170.4
Q ss_pred CCcEEEEeeEEEeCCC-CCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEEcC---------
Q 000674 592 DRSVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYG--------- 658 (1358)
Q Consensus 592 ~~~i~~~~~~f~~~~~-~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~---~G~i~~~g--------- 658 (1358)
+..++++|++++|... ....+++|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|
T Consensus 10 ~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred CceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 3468999999999643 2346999999999999999999999999999999999999996 99998876
Q ss_pred --------eEEEEeCCCC--C-CCCCHHHHHhcCC----CCCHH----HHHHHHHHhccHHHHhcCCCCCCccccCCCCC
Q 000674 659 --------SIAYVSQTSW--I-QSGSIRDNILYGK----PMDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1358)
Q Consensus 659 --------~i~yv~Q~~~--~-~~~tv~eni~~g~----~~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~ 719 (1358)
.|+||+|+|. + +..|+.+|+.... ..+.+ +..+.++..++ +++. ..++..+.+
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~~-~~~~~~p~~ 161 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEAR-KRMKMYPHE 161 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CChH-HHhcCCccc
Confidence 3999999983 3 4578988885421 22222 22233333333 2221 234678899
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEE
Q 000674 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1358)
Q Consensus 720 LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1358)
|||||||||+||||++.+|+++|+||||++||+.+.+.+.+.+..... .|.|+|+||||++.+.. ||+|++|++|+|+
T Consensus 162 LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~iv 241 (330)
T PRK09473 162 FSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTM 241 (330)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999876655444 38999999999999875 8999999999999
Q ss_pred EecChHHHHhcC
Q 000674 798 QSGNYQELLLAG 809 (1358)
Q Consensus 798 ~~g~~~~l~~~~ 809 (1358)
+.|+.+++.++.
T Consensus 242 e~g~~~~i~~~p 253 (330)
T PRK09473 242 EYGNARDVFYQP 253 (330)
T ss_pred EECCHHHHHhCC
Confidence 999999998654
No 292
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-34 Score=326.64 Aligned_cols=204 Identities=25% Similarity=0.408 Sum_probs=170.2
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~-----~~G~i~~~g---------- 658 (1358)
.++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 7 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 7 AIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred eEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 6899999999963 4699999999999999999999999999999999999885 489998865
Q ss_pred -----eEEEEeCCCCCCCCCHHHHHhcCCC----CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHH
Q 000674 659 -----SIAYVSQTSWIQSGSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1358)
Q Consensus 659 -----~i~yv~Q~~~~~~~tv~eni~~g~~----~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 725 (1358)
.++|++|++.+++.|++||+.++.. +++ ++..++++.+++.+++.. ..+.++.+||||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence 3899999998888999999987521 121 233455555665433321 12367789999999
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEe-----CCeEEEe
Q 000674 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLE-----GGQITQS 799 (1358)
Q Consensus 726 qRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~-----~G~i~~~ 799 (1358)
||++||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++++.. ||++++|+ +|++++.
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSL-RSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 9999999999999999999999999999999988766544 346899999999999876 89999998 5999999
Q ss_pred cChHHHHhc
Q 000674 800 GNYQELLLA 808 (1358)
Q Consensus 800 g~~~~l~~~ 808 (1358)
|+++++.+.
T Consensus 236 ~~~~~~~~~ 244 (259)
T PRK14260 236 GVTTQIFSN 244 (259)
T ss_pred CCHHHHhcC
Confidence 999998643
No 293
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-34 Score=329.23 Aligned_cols=205 Identities=24% Similarity=0.338 Sum_probs=170.2
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC---------
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~-----~~G~i~~~g--------- 658 (1358)
..++++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 20 ~~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 96 (276)
T PRK14271 20 PAMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV 96 (276)
T ss_pred cEEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchh
Confidence 35799999999973 4699999999999999999999999999999999999985 699998866
Q ss_pred -----eEEEEeCCCCCCCCCHHHHHhcCCC----CCHHHH----HHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHH
Q 000674 659 -----SIAYVSQTSWIQSGSIRDNILYGKP----MDKARY----DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1358)
Q Consensus 659 -----~i~yv~Q~~~~~~~tv~eni~~g~~----~~~~~~----~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 725 (1358)
.++|++|++.+++.|++||+.++.. ...+.+ .+.++.+++...+ .+...+.+.+||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LSgGq~ 169 (276)
T PRK14271 97 LEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV-------KDRLSDSPFRLSGGQQ 169 (276)
T ss_pred HHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhCCcccCCHHHH
Confidence 3899999999888999999987532 122222 2334444443221 1234467889999999
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHH
Q 000674 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1358)
Q Consensus 726 qRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1358)
||++||||++.+|+++||||||++||+.+.+.+++.+.... +++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus 170 qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~ 248 (276)
T PRK14271 170 QLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA-DRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQ 248 (276)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999887655443 45899999999999876 89999999999999999999
Q ss_pred HHhc
Q 000674 805 LLLA 808 (1358)
Q Consensus 805 l~~~ 808 (1358)
+.+.
T Consensus 249 ~~~~ 252 (276)
T PRK14271 249 LFSS 252 (276)
T ss_pred HHhC
Confidence 8754
No 294
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-34 Score=327.11 Aligned_cols=206 Identities=24% Similarity=0.361 Sum_probs=170.2
Q ss_pred CCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC--------
Q 000674 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG-------- 658 (1358)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~-----~~G~i~~~g-------- 658 (1358)
+..++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.++ ++|+|.++|
T Consensus 18 ~~~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~ 94 (274)
T PRK14265 18 HSVFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQI 94 (274)
T ss_pred CceEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccc
Confidence 347999999999974 3699999999999999999999999999999999999863 689998765
Q ss_pred -------eEEEEeCCCCCCCCCHHHHHhcCCC---CC---HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHH
Q 000674 659 -------SIAYVSQTSWIQSGSIRDNILYGKP---MD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1358)
Q Consensus 659 -------~i~yv~Q~~~~~~~tv~eni~~g~~---~~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 725 (1358)
.++|++|++.+++.|++||+.++.. +. ++...+.++.+++...+.. ...+.+.+||||||
T Consensus 95 ~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~ 167 (274)
T PRK14265 95 NSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGGQQ 167 (274)
T ss_pred hhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHHHH
Confidence 3899999998887899999987632 11 1223344555555332221 23467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEe---------CCe
Q 000674 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLE---------GGQ 795 (1358)
Q Consensus 726 qRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~---------~G~ 795 (1358)
|||+||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|+ +|+
T Consensus 168 qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~ 246 (274)
T PRK14265 168 QRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLEL-KEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGK 246 (274)
T ss_pred HHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCce
Confidence 9999999999999999999999999999999988766544 356899999999999876 89999998 899
Q ss_pred EEEecChHHHHhc
Q 000674 796 ITQSGNYQELLLA 808 (1358)
Q Consensus 796 i~~~g~~~~l~~~ 808 (1358)
+++.|+.+++..+
T Consensus 247 ~~~~g~~~~~~~~ 259 (274)
T PRK14265 247 LVEFSPTEQMFGS 259 (274)
T ss_pred EEEeCCHHHHHhC
Confidence 9999999998654
No 295
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=3e-31 Score=318.50 Aligned_cols=437 Identities=18% Similarity=0.258 Sum_probs=302.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCC-----CCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHH
Q 000674 339 FFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKK-----HSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVL 412 (1358)
Q Consensus 339 ~~~~~~~~~rir~~l~~~iy~K~L~ls~~~~~~-----~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L 412 (1358)
.|..+++.++.|..|+.....|=|.-...-+-. +..-..=+.++-|+..+.+... ....+....++++.-..+|
T Consensus 107 ~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iL 186 (604)
T COG4178 107 TWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGIL 186 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999988754321100 1111233578888887766433 2334444445555555677
Q ss_pred HHHHhHH---------HHHHHH--HHHHHHHHHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHhhHHHHHHhchHH
Q 000674 413 FGVVGLG---------ALPGLV--LFLICGLLNVPFAKILQ----KCQS-EFMIAQDERLRSTSEILNNMKIIKLQSWEE 476 (1358)
Q Consensus 413 ~~~lG~~---------~l~gl~--v~~~~~~l~~~~~~~~~----~~q~-~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~ 476 (1358)
|...|.- .++|.. ++++.+++...++-++. +... +....-|-|-.++ .+..+...|-+|.-|+
T Consensus 187 w~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lv-rv~enaE~IAly~GE~ 265 (604)
T COG4178 187 WSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLV-RVRENAEAIALYRGEK 265 (604)
T ss_pred HHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHH-HHHhhHHHHHHhcCcH
Confidence 7555522 122222 12223333333332222 2111 1122234454443 4667888999999997
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH---HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Q 000674 477 KFKSLIESRREKEFKWLSEAQL----RKAYGTVIYWM---SPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPV 549 (1358)
Q Consensus 477 ~f~~~i~~~R~~El~~l~~~~~----~~~~~~~~~~~---~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl 549 (1358)
.-.+++++.=..=++..++... +..++....++ .|.++.+-- ++. +.++-+...++-..|+.+...+
T Consensus 266 ~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~-----~f~-g~i~~G~lmqa~~aF~~v~ssl 339 (604)
T COG4178 266 VERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPR-----YFS-GQITFGGLMQAVGAFGQVHSSL 339 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHh-----hhc-CcChHHHHHHHHHHHHHHHHHH
Confidence 6665554422222222222110 11111111122 222222211 223 6899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccC---CCccch----hcc--cccCCCCcEEEEeeEEEeCCCCCCccceeEEEEe
Q 000674 550 RMIPEALSIMIQVKVSFDRINAFLLDHE---LNNDDV----RRI--SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDI 620 (1358)
Q Consensus 550 ~~lp~~i~~~~~a~vS~~Ri~~fL~~~e---~~~~~~----~~~--~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i 620 (1358)
+.+-.....+.+=+.++.|+.+|-.+-| .+.... .+. .... +..|+++|++..-+.+ .+.+++.|+++
T Consensus 340 swfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~nl~l~~p~~--~~ll~~l~~~v 416 (604)
T COG4178 340 SWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNA-DHGITLENLSLRTPDG--QTLLSELNFEV 416 (604)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccc-cceeEEeeeeEECCCC--Ceeeccceeee
Confidence 9999999999999999999999974322 111000 000 0111 5789999999988764 47899999999
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCCCCCCCHHHHHhcCCC---CCHHHHHHHHHH
Q 000674 621 KWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSGSIRDNILYGKP---MDKARYDKAIKA 695 (1358)
Q Consensus 621 ~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--~i~yv~Q~~~~~~~tv~eni~~g~~---~~~~~~~~~~~~ 695 (1358)
++||.+.|.|+||||||||+++|.|+.|--+|+|.... .+-|+||.|.++.+|.||-|.++.. ++++.+.+++.+
T Consensus 417 ~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~ 496 (604)
T COG4178 417 RPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHK 496 (604)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHH
Confidence 99999999999999999999999999999999998874 4899999999999999999999753 678899999999
Q ss_pred hccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEE
Q 000674 696 CALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILV 775 (1358)
Q Consensus 696 ~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilv 775 (1358)
|+|.+-.+++.+-+. -...||||||||+++||.++++|++++|||.|||||+.++..+++.+ +..+.+.|+|-|
T Consensus 497 vgL~~L~~rl~~~~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l-~~~lp~~tvISV 570 (604)
T COG4178 497 VGLGDLAERLDEEDR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLL-KEELPDATVISV 570 (604)
T ss_pred cCcHHHHHHHhccCc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHH-HhhCCCCEEEEe
Confidence 999988888765432 34579999999999999999999999999999999999999998754 555688999999
Q ss_pred cCCcchhhccCeEEEE
Q 000674 776 THQVEFLSEVDRILVL 791 (1358)
Q Consensus 776 tH~~~~l~~~d~i~~l 791 (1358)
.|+.......++.+-+
T Consensus 571 ~Hr~tl~~~h~~~l~l 586 (604)
T COG4178 571 GHRPTLWNFHSRQLEL 586 (604)
T ss_pred ccchhhHHHHhhheee
Confidence 9998877666654444
No 296
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-34 Score=325.47 Aligned_cols=204 Identities=27% Similarity=0.412 Sum_probs=171.2
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC----------
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG---------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~-----~~~G~i~~~g---------- 658 (1358)
.++++|+++.|+. +++|+|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 4789999999973 469999999999999999999999999999999999864 4899998766
Q ss_pred -----eEEEEeCCCCCCCCCHHHHHhcCCC----CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHH
Q 000674 659 -----SIAYVSQTSWIQSGSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1358)
Q Consensus 659 -----~i~yv~Q~~~~~~~tv~eni~~g~~----~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 725 (1358)
.++|+||++.+++.|++||+.++.. .++ +++.+.++.+++.+++..+ .++.+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-------LDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-------HhCCcccCCHHHH
Confidence 3899999999888899999987521 122 3445566666665544321 2466789999999
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHH
Q 000674 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1358)
Q Consensus 726 qRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1358)
||++||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. +|++++|++|++.+.|++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~-~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL-KEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQ 231 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHH
Confidence 9999999999999999999999999999999987765544 457899999999999877 79999999999999999998
Q ss_pred HHhc
Q 000674 805 LLLA 808 (1358)
Q Consensus 805 l~~~ 808 (1358)
+...
T Consensus 232 ~~~~ 235 (250)
T PRK14266 232 IFIN 235 (250)
T ss_pred HHhC
Confidence 8644
No 297
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-34 Score=324.99 Aligned_cols=205 Identities=25% Similarity=0.358 Sum_probs=173.5
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC---------
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~-----~~G~i~~~g--------- 658 (1358)
..+.+++.++.|.. .++++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 7 ~~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 83 (261)
T PRK14263 7 IVMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVD 83 (261)
T ss_pred ceEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccc
Confidence 45788889998863 4699999999999999999999999999999999999986 799998876
Q ss_pred ------eEEEEeCCCCCCCCCHHHHHhcCCC---CC---HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHH
Q 000674 659 ------SIAYVSQTSWIQSGSIRDNILYGKP---MD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1358)
Q Consensus 659 ------~i~yv~Q~~~~~~~tv~eni~~g~~---~~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 726 (1358)
.++|++|++.+++.|++||+.++.. +. .++..+.++..++..++.. ..++++.+|||||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~q 156 (261)
T PRK14263 84 PVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQ 156 (261)
T ss_pred hHhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHH
Confidence 2899999999888999999988642 11 2345566666666544432 234677899999999
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEe--------CCeEE
Q 000674 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLE--------GGQIT 797 (1358)
Q Consensus 727 Rv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~--------~G~i~ 797 (1358)
|++||||++++|+++||||||++||+.+.+.+++.+... .+++|+|++||+++.+.. ||++++|+ +|+++
T Consensus 157 rv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~-~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~ 235 (261)
T PRK14263 157 RLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVEL-KKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLV 235 (261)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEE
Confidence 999999999999999999999999999999988766554 457899999999998865 89999996 89999
Q ss_pred EecChHHHHhc
Q 000674 798 QSGNYQELLLA 808 (1358)
Q Consensus 798 ~~g~~~~l~~~ 808 (1358)
+.|+.+++.+.
T Consensus 236 ~~g~~~~~~~~ 246 (261)
T PRK14263 236 EMGPTAQIFQN 246 (261)
T ss_pred EeCCHHHHHhC
Confidence 99999998654
No 298
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-34 Score=325.97 Aligned_cols=204 Identities=25% Similarity=0.394 Sum_probs=167.0
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~-----~~G~i~~~g---------- 658 (1358)
.++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4889999999974 3699999999999999999999999999999999999974 799998865
Q ss_pred -----eEEEEeCCCCCCC-CCHHHHHhcCCC----CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHH
Q 000674 659 -----SIAYVSQTSWIQS-GSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1358)
Q Consensus 659 -----~i~yv~Q~~~~~~-~tv~eni~~g~~----~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 724 (1358)
.++|++|++.++. .|++||+.++.. ... ++..++++..++...+. ......+.+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK-------DRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHH
Confidence 3899999987765 699999986421 111 22334444454432211 12346678999999
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEe------CCeEE
Q 000674 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLE------GGQIT 797 (1358)
Q Consensus 725 kqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~------~G~i~ 797 (1358)
|||++||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||+|++|+ +|+++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~ 232 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL-KQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLV 232 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEE
Confidence 99999999999999999999999999999999987765544 456899999999999865 89999997 89999
Q ss_pred EecChHHHHhc
Q 000674 798 QSGNYQELLLA 808 (1358)
Q Consensus 798 ~~g~~~~l~~~ 808 (1358)
+.|+++++...
T Consensus 233 ~~~~~~~~~~~ 243 (258)
T PRK14241 233 EIDDTEKIFSN 243 (258)
T ss_pred ecCCHHHHHhC
Confidence 99999988653
No 299
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-34 Score=332.11 Aligned_cols=205 Identities=28% Similarity=0.448 Sum_probs=169.9
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC---------
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG--------- 658 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~-----~~~G~i~~~g--------- 658 (1358)
..+.++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 46899999999974 469999999999999999999999999999999999986 6899998865
Q ss_pred ------eEEEEeCCCCCCCCCHHHHHhcCCCC---------------C-----HHHHHHHHHHhccHHHHhcCCCCCCcc
Q 000674 659 ------SIAYVSQTSWIQSGSIRDNILYGKPM---------------D-----KARYDKAIKACALDKDINNFDHGDLTE 712 (1358)
Q Consensus 659 ------~i~yv~Q~~~~~~~tv~eni~~g~~~---------------~-----~~~~~~~~~~~~l~~dl~~l~~gd~t~ 712 (1358)
.++|++|++.+++.|++||+.++... + .++..+.++.+++..++. +.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVN-------DR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhh-------HH
Confidence 38999999998888999999976321 0 123344455555433332 23
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeE-EE
Q 000674 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRI-LV 790 (1358)
Q Consensus 713 ig~~g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i-~~ 790 (1358)
.++++.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++ ++
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~-~~~~tiiivtH~~~~i~~~~d~i~~~ 272 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEEL-AEEYTVVVVTHNMQQAARISDQTAVF 272 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCEEEEEEcCHHHHHHhcCEEEEE
Confidence 45778899999999999999999999999999999999999999987765544 345899999999999876 8997 56
Q ss_pred EeCCeEEEecChHHHHhc
Q 000674 791 LEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 791 l~~G~i~~~g~~~~l~~~ 808 (1358)
|++|++++.|+++++.+.
T Consensus 273 l~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 273 LTGGELVEYDDTDKIFEN 290 (305)
T ss_pred ecCCEEEEeCCHHHHHhC
Confidence 799999999999988643
No 300
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=3.6e-34 Score=326.56 Aligned_cols=207 Identities=25% Similarity=0.372 Sum_probs=168.9
Q ss_pred cEEEEeeEEEeCCC------CCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------
Q 000674 594 SVKIQEGNFSWDPE------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~------~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------- 658 (1358)
.++++|+++.|+.. .++++++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 37899999999731 125799999999999999999999999999999999999999999998876
Q ss_pred -------eEEEEeCCCC--C-CCCCHHHHHhcCC----CCCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCC
Q 000674 659 -------SIAYVSQTSW--I-QSGSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1358)
Q Consensus 659 -------~i~yv~Q~~~--~-~~~tv~eni~~g~----~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~L 720 (1358)
.++|++|++. + .+.|++||+.+.. ..+. ++.++.++.+++..+ ..+.++.+|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~L 152 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDS----------VLDKRPPQL 152 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChh----------HhhCCCccC
Confidence 3899999983 3 4579999986531 1121 234445554444321 123567899
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEE
Q 000674 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1358)
Q Consensus 721 SGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1358)
|||||||++||||++++|+++||||||++||+.+.+.+.+.+..... .++|+|++||+++.+.. ||++++|++|++++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999999998876655443 38899999999999986 89999999999999
Q ss_pred ecChHHHHhcCc
Q 000674 799 SGNYQELLLAGT 810 (1358)
Q Consensus 799 ~g~~~~l~~~~~ 810 (1358)
.|+++++.....
T Consensus 233 ~g~~~~~~~~~~ 244 (268)
T PRK10419 233 TQPVGDKLTFSS 244 (268)
T ss_pred eCChhhccCCCC
Confidence 999999865433
No 301
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=3.6e-34 Score=338.39 Aligned_cols=195 Identities=25% Similarity=0.408 Sum_probs=164.3
Q ss_pred eeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------eEE
Q 000674 599 EGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIA 661 (1358)
Q Consensus 599 ~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-----------------~i~ 661 (1358)
|++++|+. . .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++
T Consensus 4 ~l~~~~~~---~-~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---F-SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---E-EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 67888863 2 34 99999999999999999999999999999999999999998765 289
Q ss_pred EEeCCCCCCC-CCHHHHHhcCCCC-C----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHh
Q 000674 662 YVSQTSWIQS-GSIRDNILYGKPM-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1358)
Q Consensus 662 yv~Q~~~~~~-~tv~eni~~g~~~-~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~ 735 (1358)
|++|++.++. .|++||+.|+... . .++.++.++..++...+ ..++.+|||||||||+||||++
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLL-----------GRLPGRLSGGEKQRVAIGRALL 147 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHHH
Confidence 9999998764 6999999987431 1 12345555555554333 3567799999999999999999
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcC-CcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhcC
Q 000674 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1358)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1358)
.+|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++.+.. ||++++|++|++++.|+++++....
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 999999999999999999999998877655444 8999999999999865 8999999999999999999987654
No 302
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-34 Score=325.32 Aligned_cols=205 Identities=25% Similarity=0.408 Sum_probs=170.2
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCC-----CcEEEEcC----------
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-----SGTVNLYG---------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~-----~G~i~~~g---------- 658 (1358)
.++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.+|+ +|+|.++|
T Consensus 7 ~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 7 AIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred eEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 5899999999963 35899999999999999999999999999999999999985 79887654
Q ss_pred -----eEEEEeCCCCCCCCCHHHHHhcCCC---C-C----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHH
Q 000674 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1358)
Q Consensus 659 -----~i~yv~Q~~~~~~~tv~eni~~g~~---~-~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 725 (1358)
.++|++|++.++..|++||+.++.. . . .++..++++..++...+.. ..++.+.+||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 156 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQQ 156 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence 3899999988877999999986421 1 1 1233445555555332221 23467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeC-----CeEEE
Q 000674 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEG-----GQITQ 798 (1358)
Q Consensus 726 qRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~-----G~i~~ 798 (1358)
||++||||++++|+++||||||++||+.+.+.+.+.+..... +++|+|++||+++.+.. ||+|++|++ |++++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 999999999999999999999999999999998876655433 48999999999999876 899999999 99999
Q ss_pred ecChHHHHhc
Q 000674 799 SGNYQELLLA 808 (1358)
Q Consensus 799 ~g~~~~l~~~ 808 (1358)
.|+++++.+.
T Consensus 237 ~~~~~~~~~~ 246 (261)
T PRK14258 237 FGLTKKIFNS 246 (261)
T ss_pred eCCHHHHHhC
Confidence 9999998654
No 303
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-34 Score=323.98 Aligned_cols=204 Identities=26% Similarity=0.378 Sum_probs=165.5
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCC-----CcEEEEcC----------
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-----SGTVNLYG---------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~-----~G~i~~~g---------- 658 (1358)
.++++|++++|+. .++++|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 3788999999963 46999999999999999999999999999999999999874 89998865
Q ss_pred -----eEEEEeCCCCCCC-CCHHHHHhcCCC---C-CHHH----HHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHH
Q 000674 659 -----SIAYVSQTSWIQS-GSIRDNILYGKP---M-DKAR----YDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1358)
Q Consensus 659 -----~i~yv~Q~~~~~~-~tv~eni~~g~~---~-~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 724 (1358)
.++|++|++.++. .|++||+.++.. . .++. ..+.++..++...+. .....++.+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~ 153 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVK-------DRLKTPATGLSGGQ 153 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhh-------hhhcCCcccCCHHH
Confidence 3899999998766 699999986431 1 1221 222223333322111 11235678999999
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChH
Q 000674 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1358)
Q Consensus 725 kqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1358)
|||++||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDL-KKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTD 232 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999988765543 357999999999999886 8999999999999999999
Q ss_pred HHHhc
Q 000674 804 ELLLA 808 (1358)
Q Consensus 804 ~l~~~ 808 (1358)
++...
T Consensus 233 ~~~~~ 237 (252)
T PRK14272 233 QLFTN 237 (252)
T ss_pred HHHhC
Confidence 98654
No 304
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=3.7e-34 Score=318.82 Aligned_cols=199 Identities=29% Similarity=0.406 Sum_probs=157.9
Q ss_pred EEEEeeEEEeCCCC-CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc---CCCcEEEEcC----------eE
Q 000674 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---KISGTVNLYG----------SI 660 (1358)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~---~~~G~i~~~g----------~i 660 (1358)
+.++|+++.++... .+++++|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++| .+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i 83 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCV 83 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccE
Confidence 56899999997542 3579999999999999999999999999999999999999 9999999877 39
Q ss_pred EEEeCCCCCCC-CCHHHHHhcCCCC------CHHHHHHHHHHhccHHHHhcCCCCCCcc-ccCCCCCCChHHHHHHHHHH
Q 000674 661 AYVSQTSWIQS-GSIRDNILYGKPM------DKARYDKAIKACALDKDINNFDHGDLTE-IGQRGLNLSGGQKQRIQLAR 732 (1358)
Q Consensus 661 ~yv~Q~~~~~~-~tv~eni~~g~~~------~~~~~~~~~~~~~l~~dl~~l~~gd~t~-ig~~g~~LSGGQkqRv~LAR 732 (1358)
+|++|++.+++ .|++||+.++... .++...+..+.. .++. .+.+. ..+...+||||||||++|||
T Consensus 84 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~----~l~~---~~l~~~~~~~~~~LS~G~~qrl~lar 156 (226)
T cd03234 84 AYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDV----LLRD---LALTRIGGNLVKGISGGERRRVSIAV 156 (226)
T ss_pred EEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHH----HHHh---hcchhhhcccccCcCHHHHHHHHHHH
Confidence 99999998766 4999999875211 111100000100 1111 11222 23567899999999999999
Q ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCc-chhh-ccCeEEEEeCCeEEEec
Q 000674 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV-EFLS-EVDRILVLEGGQITQSG 800 (1358)
Q Consensus 733 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~-~~l~-~~d~i~~l~~G~i~~~g 800 (1358)
|++++|+++||||||++||+.+.+++.+.+.....+++|+|++||+. +.+. .||++++|++|++++.|
T Consensus 157 al~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 157 QLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999998876655444688999999998 4555 58999999999998765
No 305
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.1e-34 Score=287.81 Aligned_cols=194 Identities=27% Similarity=0.405 Sum_probs=166.0
Q ss_pred cEEEEeeEEEeCCC-CCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000674 594 SVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~-~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------- 658 (1358)
.|++++++.+-+.. ....+|++++|.|++||.++||||+||||||||..+.|+..|++|+|++.|
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 46667776665433 245689999999999999999999999999999999999999999999876
Q ss_pred ---eEEEEeCCCC-CCCCCHHHHHhcCCCCC-------HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000674 659 ---SIAYVSQTSW-IQSGSIRDNILYGKPMD-------KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1358)
Q Consensus 659 ---~i~yv~Q~~~-~~~~tv~eni~~g~~~~-------~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 727 (1358)
+||+|+|... ++|+|..||+..+.+.. .+.-.+.+++.+|.+-+.. .+.+||||++||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~H-----------yP~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTH-----------YPAQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCccccccc-----------CccccCchHHHH
Confidence 5999999875 68999999998764322 2335566777777665554 456899999999
Q ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHh-cCCcEEEEEcCCcchhhccCeEEEEeCCeEEE
Q 000674 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRILVLEGGQITQ 798 (1358)
Q Consensus 728 v~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~ 798 (1358)
|+||||+...|+|++-||||-+||..++++|.+.++... ..|.|.|+||||.....+|||++-|++|++++
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 999999999999999999999999999999998888654 46899999999999999999999999999975
No 306
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-34 Score=323.23 Aligned_cols=204 Identities=27% Similarity=0.429 Sum_probs=166.4
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc--C---CCcEEEEcC----------
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--K---ISGTVNLYG---------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~--~---~~G~i~~~g---------- 658 (1358)
.++++|+++.|+. +++|+|+||++++||+++|+|+||||||||+++|+|..+ | ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4889999999973 469999999999999999999999999999999999865 4 589998865
Q ss_pred -----eEEEEeCCCCCCCCCHHHHHhcCCC---C-CH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHH
Q 000674 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1358)
Q Consensus 659 -----~i~yv~Q~~~~~~~tv~eni~~g~~---~-~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 725 (1358)
.++|++|++.+++.|++||+.++.. . .. ++..+.++.+++...+. ......+.+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK-------DHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchh-------hHHhcCcccCCHHHH
Confidence 3899999998887899999987521 1 11 12233334443322111 123467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHH
Q 000674 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1358)
Q Consensus 726 qRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1358)
||++||||++.+|+++||||||++||+++.+.+.+.+... .+++|+|++||+++.+.. ||+|++|++|++++.|+..+
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLEL-RDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQ 233 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-HhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999987765544 345899999999999876 89999999999999999888
Q ss_pred HHhc
Q 000674 805 LLLA 808 (1358)
Q Consensus 805 l~~~ 808 (1358)
...+
T Consensus 234 ~~~~ 237 (252)
T PRK14255 234 MFLN 237 (252)
T ss_pred HhcC
Confidence 7644
No 307
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-34 Score=316.31 Aligned_cols=185 Identities=30% Similarity=0.424 Sum_probs=155.3
Q ss_pred eeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------eEE
Q 000674 599 EGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIA 661 (1358)
Q Consensus 599 ~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-----------------~i~ 661 (1358)
|++++|++. .+ |+||++++ |+++|+||||||||||+++|+|+++|++|+|.++| .++
T Consensus 5 ~l~~~~~~~---~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 78 (214)
T cd03297 5 DIEKRLPDF---TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIG 78 (214)
T ss_pred eeeEecCCe---ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEE
Confidence 788888742 23 99999999 99999999999999999999999999999998865 389
Q ss_pred EEeCCCCCC-CCCHHHHHhcCCCC-C----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHh
Q 000674 662 YVSQTSWIQ-SGSIRDNILYGKPM-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1358)
Q Consensus 662 yv~Q~~~~~-~~tv~eni~~g~~~-~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~ 735 (1358)
|++|++.++ +.|++||+.++... . +++..+.++..++.... ..++.+||||||||++||||++
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~ 147 (214)
T cd03297 79 LVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLL-----------NRYPAQLSGGEKQRVALARALA 147 (214)
T ss_pred EEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHh-----------hcCcccCCHHHHHHHHHHHHHh
Confidence 999999876 56999999875321 1 23445555555554332 3567899999999999999999
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcC-CcEEEEEcCCcchhhc-cCeEEEEeCCeEEEec
Q 000674 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1358)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1358)
++|++++|||||++||+.+.+.+++.+.....+ |+|+|++||+++.+.. ||++++|++|++++.|
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 148 AQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999988766554444 8999999999999865 8999999999998765
No 308
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=4.1e-34 Score=317.13 Aligned_cols=191 Identities=27% Similarity=0.412 Sum_probs=160.7
Q ss_pred EEEEeeEEEeCCCC-CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000674 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1358)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------- 658 (1358)
++++|+++.|++.. ..++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 68899999996432 25699999999999999999999999999999999999999999998875
Q ss_pred -eEEEEeCCCCCCC-CCHHHHHhcCCC----CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHH
Q 000674 659 -SIAYVSQTSWIQS-GSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1358)
Q Consensus 659 -~i~yv~Q~~~~~~-~tv~eni~~g~~----~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 728 (1358)
.++|++|++.++. .|+.||+.++.. .+. +++.+.++.+++.+.++ ..+.+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLD-----------YYPHNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHH
Confidence 3899999997765 799999987532 222 24455666666654443 45678999999999
Q ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhccCeEEEEeCCeE
Q 000674 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1358)
Q Consensus 729 ~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i 796 (1358)
+||||++.+|+++||||||++||+.+.+.+.+.+..... +++|+|++||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999998876654443 48999999999997767999999999986
No 309
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.1e-34 Score=303.44 Aligned_cols=159 Identities=28% Similarity=0.500 Sum_probs=144.4
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------------~i~y 662 (1358)
++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEE
Confidence 368899999963 3699999999999999999999999999999999999999999998876 3899
Q ss_pred EeCCCCCCC-CCHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEE
Q 000674 663 VSQTSWIQS-GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741 (1358)
Q Consensus 663 v~Q~~~~~~-~tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~il 741 (1358)
++|++.++. .|++||+. ||||||||++||||++.+|+++
T Consensus 78 ~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 78 LPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred EecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 999998765 59999974 9999999999999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeE
Q 000674 742 LFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1358)
Q Consensus 742 lLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1358)
||||||++||+.+.+.+.+.+.....+|.|+|++||+.+++.. ||++++|++|++
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999988776555568999999999999885 899999999974
No 310
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=5.6e-34 Score=309.26 Aligned_cols=174 Identities=26% Similarity=0.430 Sum_probs=151.3
Q ss_pred cEEEEeeEEEeCCC---CCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCc--cCCCcEEEEcC----------
Q 000674 594 SVKIQEGNFSWDPE---LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLYG---------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~---~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~--~~~~G~i~~~g---------- 658 (1358)
.++++|++++|+.. ...++++|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++|
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 47899999999752 1256999999999999999999999999999999999999 99999998876
Q ss_pred eEEEEeCCCCCC-CCCHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcC
Q 000674 659 SIAYVSQTSWIQ-SGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1358)
Q Consensus 659 ~i~yv~Q~~~~~-~~tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~ 737 (1358)
.++|++|++.++ +.|++||+.++... . .||||||||++||||++.+
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~~~------------------~---------------~LS~G~~qrv~laral~~~ 129 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAAKL------------------R---------------GLSGGERKRVSIALELVSN 129 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHHHh------------------c---------------cCCHHHHHHHHHHHHHHcC
Confidence 489999998875 46999999753210 0 7999999999999999999
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcc-hhhc-cCeEEEEeCCeEEEec
Q 000674 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVE-FLSE-VDRILVLEGGQITQSG 800 (1358)
Q Consensus 738 ~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~-~l~~-~d~i~~l~~G~i~~~g 800 (1358)
|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++ .+.. ||++++|++|++.+.|
T Consensus 130 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 130 PSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 9999999999999999999988766554446899999999996 5654 8999999999998654
No 311
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-34 Score=294.92 Aligned_cols=204 Identities=28% Similarity=0.420 Sum_probs=171.3
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~i~ 661 (1358)
|+.+|++++-. .+.+|++++|++++||.++|+||||+||||||++|.||+.|++|++.++| .-|
T Consensus 2 i~a~nls~~~~---Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLA---GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEee---cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 56778887765 35699999999999999999999999999999999999999999999988 368
Q ss_pred EEeCCCCC-CCCCHHHHHhcCCC-C----CHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHh
Q 000674 662 YVSQTSWI-QSGSIRDNILYGKP-M----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1358)
Q Consensus 662 yv~Q~~~~-~~~tv~eni~~g~~-~----~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~ 735 (1358)
.+||+..+ |.-||+|-+.+|+- . +.++-.++.++|-...|+..+.. +...+|||||||||.|||.|.
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~-------R~y~~LSGGEqQRVqlARvLa 151 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAG-------RDYRTLSGGEQQRVQLARVLA 151 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhc-------cchhhcCchHHHHHHHHHHHH
Confidence 99999776 88999999999852 2 21233334444444445555543 345679999999999999999
Q ss_pred c------CCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhc
Q 000674 736 N------DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 736 ~------~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1358)
+ ++++++||||||+||.....++++.......+|..|+.|-||++.... ||+|++|.+||++..|++++.+..
T Consensus 152 Ql~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~ 231 (259)
T COG4559 152 QLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTD 231 (259)
T ss_pred HccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCH
Confidence 6 556999999999999999999998877777888999999999999765 999999999999999999999864
No 312
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=9.7e-34 Score=321.07 Aligned_cols=205 Identities=23% Similarity=0.282 Sum_probs=164.6
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------- 658 (1358)
.++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 4889999999964 3589999999999999999999999999999999999999999998864
Q ss_pred -------eEEEEeCCCC--C-CCCCHHHHHhcC-----CCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChH
Q 000674 659 -------SIAYVSQTSW--I-QSGSIRDNILYG-----KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1358)
Q Consensus 659 -------~i~yv~Q~~~--~-~~~tv~eni~~g-----~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 723 (1358)
.++|++|++. + +..|+.+|+.+. .....+... ...+.++.++.+ .+..+..+.+||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------~~~~~l~~l~l~-~~~~~~~~~~LSgG 152 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRA------AAHDWLEEVEID-PTRIDDLPRAFSGG 152 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHH------HHHHHHHHcCCC-hhhhhcCchhcCHH
Confidence 2799999974 2 345889998542 110111111 112223333321 12345678899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecC
Q 000674 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1358)
Q Consensus 724 QkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1358)
||||++||||++++|+++||||||++||+.+.+.+.+.+..... .|+|+|+|||+++.+.. ||++++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~ 232 (253)
T TIGR02323 153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGL 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999998876655443 48999999999999885 89999999999999999
Q ss_pred hHHHHhc
Q 000674 802 YQELLLA 808 (1358)
Q Consensus 802 ~~~l~~~ 808 (1358)
.+++..+
T Consensus 233 ~~~~~~~ 239 (253)
T TIGR02323 233 TDQVLDD 239 (253)
T ss_pred HHHHhcC
Confidence 9888643
No 313
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=7.3e-34 Score=317.18 Aligned_cols=189 Identities=24% Similarity=0.378 Sum_probs=156.1
Q ss_pred cceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC----CCcEEEEcC-----------eEEEEeCCCC--C-CCCC
Q 000674 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK----ISGTVNLYG-----------SIAYVSQTSW--I-QSGS 673 (1358)
Q Consensus 612 ~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~----~~G~i~~~g-----------~i~yv~Q~~~--~-~~~t 673 (1358)
+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++| .++|++|++. + ...|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 47899999999999999999999999999999999999 899999876 4999999985 3 2469
Q ss_pred HHHHHhcCCC----CC---HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCC
Q 000674 674 IRDNILYGKP----MD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1358)
Q Consensus 674 v~eni~~g~~----~~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep 746 (1358)
++||+.+... .. .+++.+.++.+++.. + .+..++.+.+|||||||||+||||++++|+++|||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------P-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------h-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999865321 11 123445555555531 1 0123467789999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhc
Q 000674 747 FSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 747 ~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1358)
|++||+.+.+.+.+.+..... .++|+|++||+++.+.. ||++++|++|++.+.|+++++...
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 216 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999998876665544 37899999999999875 899999999999999999998754
No 314
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-33 Score=335.75 Aligned_cols=205 Identities=22% Similarity=0.248 Sum_probs=171.6
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCCCC-CC
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWI-QS 671 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g~i~yv~Q~~~~-~~ 671 (1358)
..++++|++|.|+.....++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.-.++.+.+.+ ..
T Consensus 20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~ 99 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQ 99 (549)
T ss_pred ceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCC
Confidence 45889999999976544579999999999999999999999999999999999999999999999976666665544 45
Q ss_pred CCHHHHHhcCC---CCCHH----HHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEc
Q 000674 672 GSIRDNILYGK---PMDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744 (1358)
Q Consensus 672 ~tv~eni~~g~---~~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLD 744 (1358)
.|++||+.++. ..+.+ +..++++.+++...++ .++.+||||||||++||||++.+|+++|||
T Consensus 100 lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld-----------~~~~~LSGGQrQRVaLArAL~~~P~LLLLD 168 (549)
T PRK13545 100 LTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIY-----------QPVKTYSSGMKSRLGFAISVHINPDILVID 168 (549)
T ss_pred CcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhh-----------CCcccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 69999997642 22222 2334555566654333 456789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhc
Q 000674 745 DPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 745 ep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1358)
|||++||+.+.+.+++.+.....+|+|+|++||+++.+.. ||++++|++|++.+.|+++++...
T Consensus 169 EPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 169 EALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 9999999999999887665544568999999999999876 899999999999999999998754
No 315
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-33 Score=309.28 Aligned_cols=180 Identities=22% Similarity=0.308 Sum_probs=151.2
Q ss_pred cEEEEeeEEEeCCC-CCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc---CCCcEEEEcC-----------
Q 000674 594 SVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---KISGTVNLYG----------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~-~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~---~~~G~i~~~g----------- 658 (1358)
.+.++|++|.|+.. .+.++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 36799999999864 34579999999999999999999999999999999999999 8999998876
Q ss_pred -eEEEEeCCCCCCC-CCHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhc
Q 000674 659 -SIAYVSQTSWIQS-GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN 736 (1358)
Q Consensus 659 -~i~yv~Q~~~~~~-~tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~ 736 (1358)
.++|++|++.++. .|++||+.++.... ..++...||||||||++||||+++
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---------------------------~~~~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRCK---------------------------GNEFVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhhc---------------------------cccchhhCCHHHHHHHHHHHHHhh
Confidence 3899999987654 69999998753110 124567899999999999999999
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcC-CcEEEEEcC-Ccchhh-ccCeEEEEeCCeEEEec
Q 000674 737 DADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTH-QVEFLS-EVDRILVLEGGQITQSG 800 (1358)
Q Consensus 737 ~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH-~~~~l~-~~d~i~~l~~G~i~~~g 800 (1358)
+|+++||||||++||+.+.+.+.+.+.....+ +.|+|+++| +.+.+. .||++++|++|++++.|
T Consensus 136 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 136 RASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999988766554443 567666655 556665 48999999999998754
No 316
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-34 Score=305.94 Aligned_cols=202 Identities=23% Similarity=0.350 Sum_probs=169.9
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe--------------E
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------------I 660 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g~--------------i 660 (1358)
.++++++.+|.. -.+++|+||++++||+++++|||||||||++++|.|.++|++|+|.++|. |
T Consensus 5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 467889999873 56999999999999999999999999999999999999999999999883 8
Q ss_pred EEEeCCCCCC-CCCHHHHHhcCCC-------------C--C----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCC
Q 000674 661 AYVSQTSWIQ-SGSIRDNILYGKP-------------M--D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1358)
Q Consensus 661 ~yv~Q~~~~~-~~tv~eni~~g~~-------------~--~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~L 720 (1358)
+--+|.+-+| ++||.||++.+.. + + .++-.+.++.++|.+.. ++...+|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a-----------~~~A~~L 150 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELA-----------DRPAGNL 150 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhh-----------cchhhcC
Confidence 8899999875 6799999987621 1 0 11222334444443322 3667899
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEE
Q 000674 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1358)
Q Consensus 721 SGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1358)
|+|||+|+.|||||+.+|+++|||||.+|+.+....++.+.+..... .|.|+++|.||++.+.. ||||+||+.|+++.
T Consensus 151 syG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IA 230 (250)
T COG0411 151 SYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIA 230 (250)
T ss_pred ChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcc
Confidence 99999999999999999999999999999999999999887665554 46899999999999876 99999999999999
Q ss_pred ecChHHHHhcCc
Q 000674 799 SGNYQELLLAGT 810 (1358)
Q Consensus 799 ~g~~~~l~~~~~ 810 (1358)
+|+|+|+.+++.
T Consensus 231 eG~P~eV~~dp~ 242 (250)
T COG0411 231 EGTPEEVRNNPR 242 (250)
T ss_pred cCCHHHHhcCHH
Confidence 999999987643
No 317
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=7.1e-34 Score=317.04 Aligned_cols=182 Identities=35% Similarity=0.459 Sum_probs=152.4
Q ss_pred ceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe--------EEEEeCCCCCCC-CCHHHHHhcCC-
Q 000674 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------IAYVSQTSWIQS-GSIRDNILYGK- 682 (1358)
Q Consensus 613 l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g~--------i~yv~Q~~~~~~-~tv~eni~~g~- 682 (1358)
|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. .+|++|++.++. .|++||+.++.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999873 589999987764 79999998641
Q ss_pred ----CCCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Q 000674 683 ----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754 (1358)
Q Consensus 683 ----~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~ 754 (1358)
..++ ++..+.++.+++...++ ..+.+||||||||++||||++++|+++||||||++||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~ 149 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAAD-----------KRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALT 149 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHHHc-----------CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHH
Confidence 1222 23445566666654332 4567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHH
Q 000674 755 AATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1358)
Q Consensus 755 ~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1358)
.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++++.|+..++
T Consensus 150 ~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 150 RGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 9998876655444 48899999999999865 899999999999988765443
No 318
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-33 Score=306.80 Aligned_cols=174 Identities=22% Similarity=0.335 Sum_probs=150.6
Q ss_pred cEEEEeeEEEeCCCC-CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCc--cCCCcEEEEcC---------eEE
Q 000674 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLYG---------SIA 661 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~--~~~~G~i~~~g---------~i~ 661 (1358)
.++++|+++.|++.. ++++++|+||++++||+++|+||||||||||+++|+|.. +|++|+|.++| .++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 478999999997421 246999999999999999999999999999999999986 48999999876 489
Q ss_pred EEeCCCCCCC-CCHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000674 662 YVSQTSWIQS-GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1358)
Q Consensus 662 yv~Q~~~~~~-~tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~i 740 (1358)
|++|++.++. .|++||+.++.. ++ +||||||||++||||++.+|++
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~~---------~~------------------------~LSgGe~qrv~la~al~~~p~v 129 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFSAL---------LR------------------------GLSVEQRKRLTIGVELAAKPSI 129 (192)
T ss_pred EecccCccccCCcHHHHHHHHHH---------Hh------------------------cCCHHHhHHHHHHHHHhcCCcE
Confidence 9999987655 699999986420 00 7999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcch-h-hccCeEEEEeC-CeEEEec
Q 000674 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF-L-SEVDRILVLEG-GQITQSG 800 (1358)
Q Consensus 741 llLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~-l-~~~d~i~~l~~-G~i~~~g 800 (1358)
++|||||++||+.+.+.+++.+.....+++|+|++||+++. + ..||++++|++ |++++.|
T Consensus 130 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 130 LFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999988665544458999999999984 4 55899999999 9998765
No 319
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-34 Score=286.51 Aligned_cols=204 Identities=24% Similarity=0.382 Sum_probs=173.4
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------- 658 (1358)
.+++++|....|.. ..+|++||++.++|+.+.|+|.+||||||+|++|.=+..|..|.|.++|
T Consensus 5 ~~l~v~dlHK~~G~---~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~ 81 (256)
T COG4598 5 NALEVEDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLK 81 (256)
T ss_pred cceehhHHHhhccc---chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCee
Confidence 46788888888875 3599999999999999999999999999999999999999999999876
Q ss_pred ------------eEEEEeCCCCCC-CCCHHHHHhcC------CCCC--HHHHHHHHHHhccHHHHhcCCCCCCccccCCC
Q 000674 659 ------------SIAYVSQTSWIQ-SGSIRDNILYG------KPMD--KARYDKAIKACALDKDINNFDHGDLTEIGQRG 717 (1358)
Q Consensus 659 ------------~i~yv~Q~~~~~-~~tv~eni~~g------~~~~--~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g 717 (1358)
+.++|+|+..++ .+||.||+.-. .+-+ .++-+..+...++.+.-+ ..+
T Consensus 82 ~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~-----------~YP 150 (256)
T COG4598 82 PADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKAD-----------AYP 150 (256)
T ss_pred eCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhh-----------cCc
Confidence 379999998775 67999999643 2222 234444555566654433 456
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeE
Q 000674 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1358)
Q Consensus 718 ~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1358)
..|||||+||++|||||..+|+++|+|||||||||+-.-++.+.......+|+|.++|||.+.|.++ +.+|+.+++|.|
T Consensus 151 ~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~i 230 (256)
T COG4598 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKI 230 (256)
T ss_pred cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeeccee
Confidence 7899999999999999999999999999999999999888877666667789999999999999988 599999999999
Q ss_pred EEecChHHHHhcCc
Q 000674 797 TQSGNYQELLLAGT 810 (1358)
Q Consensus 797 ~~~g~~~~l~~~~~ 810 (1358)
.++|+|+++..++.
T Consensus 231 EE~G~P~qvf~nP~ 244 (256)
T COG4598 231 EEEGPPEQVFGNPQ 244 (256)
T ss_pred cccCChHHHhcCCC
Confidence 99999999986643
No 320
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-33 Score=318.28 Aligned_cols=206 Identities=22% Similarity=0.341 Sum_probs=167.4
Q ss_pred CCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000674 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1358)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------------- 658 (1358)
.+.+.++|++++|+. +++++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|
T Consensus 8 ~~~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~ 84 (257)
T PRK14246 8 EDVFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84 (257)
T ss_pred hhheeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCC
Confidence 346899999999974 4689999999999999999999999999999999999999997765543
Q ss_pred ------eEEEEeCCCCCCC-CCHHHHHhcCCC---C-CHHH----HHHHHHHhccHHHHhcCCCCCCccccCCCCCCChH
Q 000674 659 ------SIAYVSQTSWIQS-GSIRDNILYGKP---M-DKAR----YDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1358)
Q Consensus 659 ------~i~yv~Q~~~~~~-~tv~eni~~g~~---~-~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 723 (1358)
+++|++|+|.++. .|++||+.++.. . .++. ..+.++..++.+.+. ...++.+..||||
T Consensus 85 ~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G 157 (257)
T PRK14246 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY-------DRLNSPASQLSGG 157 (257)
T ss_pred HHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccch-------hhhcCCcccCCHH
Confidence 3899999998765 599999987521 1 2222 223333334322110 1234677899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecCh
Q 000674 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1358)
Q Consensus 724 QkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1358)
||||++||||++++|++++|||||++||+.+.+.+.+.+... .+++|+|++||+++++.. ||++++|++|++.+.|+.
T Consensus 158 ~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~ 236 (257)
T PRK14246 158 QQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITEL-KNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSS 236 (257)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999987765443 356899999999999965 899999999999999999
Q ss_pred HHHHhc
Q 000674 803 QELLLA 808 (1358)
Q Consensus 803 ~~l~~~ 808 (1358)
+++.+.
T Consensus 237 ~~~~~~ 242 (257)
T PRK14246 237 NEIFTS 242 (257)
T ss_pred HHHHhC
Confidence 988754
No 321
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=8.6e-34 Score=311.48 Aligned_cols=181 Identities=28% Similarity=0.409 Sum_probs=151.3
Q ss_pred EEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------e
Q 000674 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------S 659 (1358)
Q Consensus 597 ~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-----------------~ 659 (1358)
++|+++.|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4688999963 4699999999999999999999999999999999999999999998765 3
Q ss_pred EEEEeCCCCCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000674 660 IAYVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1358)
Q Consensus 660 i~yv~Q~~~~~~-~tv~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 731 (1358)
++|++|++.++. .|++||+.++.. .+ .++..+.++..++.... +.+..+||||||||++||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lS~G~~qr~~la 146 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKL-----------KQKIYELSGGEQQRVALA 146 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhh-----------cCChhhCCHHHHHHHHHH
Confidence 899999998765 799999987422 11 23444555655554332 255678999999999999
Q ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEE
Q 000674 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVL 791 (1358)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l 791 (1358)
||++++|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+..||++++|
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 147 RAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 999999999999999999999999998876655444589999999999987779999875
No 322
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.9e-33 Score=333.43 Aligned_cols=213 Identities=21% Similarity=0.368 Sum_probs=177.9
Q ss_pred CCcEEEEeeEEEeCCC--------CCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----
Q 000674 592 DRSVKIQEGNFSWDPE--------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----- 658 (1358)
Q Consensus 592 ~~~i~~~~~~f~~~~~--------~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g----- 658 (1358)
+..++++|++..|... ....+++||||++++||.++|||++|||||||.++|+|+.+|++|+|.++|
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~ 357 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDL 357 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccc
Confidence 3457799999999852 234689999999999999999999999999999999999999999999876
Q ss_pred ----------eEEEEeCCCCC---CCCCHHHHHhcCCC----CC----HHHHHHHHHHhccHHHHhcCCCCCCccccCCC
Q 000674 659 ----------SIAYVSQTSWI---QSGSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRG 717 (1358)
Q Consensus 659 ----------~i~yv~Q~~~~---~~~tv~eni~~g~~----~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g 717 (1358)
++-+++|+|.- +..||+++|.-... .. +++..+.++..+|.+++ ...++
T Consensus 358 ~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~----------l~ryP 427 (539)
T COG1123 358 TGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEF----------LDRYP 427 (539)
T ss_pred ccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHH----------HhcCc
Confidence 48899999862 56799999864321 11 23455557777776542 34678
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCe
Q 000674 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1358)
Q Consensus 718 ~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1358)
.+|||||||||+|||||..+|+++++|||+|+||+.++.++.+.+.+... -|-|.|+||||+.++.+ ||||+||++|+
T Consensus 428 ~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~ 507 (539)
T COG1123 428 HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGR 507 (539)
T ss_pred hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCe
Confidence 89999999999999999999999999999999999999999987766544 38999999999999987 89999999999
Q ss_pred EEEecChHHHHhcC-chHHH
Q 000674 796 ITQSGNYQELLLAG-TAFEQ 814 (1358)
Q Consensus 796 i~~~g~~~~l~~~~-~~~~~ 814 (1358)
|++.|+.+++.+.. ..|.+
T Consensus 508 iVE~G~~~~v~~~p~h~Ytr 527 (539)
T COG1123 508 IVEEGPTEKVFENPQHPYTR 527 (539)
T ss_pred EEEeCCHHHHhcCCCChHHH
Confidence 99999998888663 33443
No 323
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-33 Score=301.99 Aligned_cols=160 Identities=34% Similarity=0.464 Sum_probs=144.7
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------e
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g---------------~ 659 (1358)
++++|++++|+. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 468999999964 4699999999999999999999999999999999999999999998765 3
Q ss_pred EEEEeCCCCCC-CCCHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000674 660 IAYVSQTSWIQ-SGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1358)
Q Consensus 660 i~yv~Q~~~~~-~~tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~ 738 (1358)
++|++|+|.++ +.|++||+.+. ||||||||++||||++++|
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p 119 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDP 119 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCC
Confidence 89999998876 56999998764 9999999999999999999
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHhHhcC-CcEEEEEcCCcchhhc-cCeEEEEeCCe
Q 000674 739 DIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1358)
Q Consensus 739 ~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1358)
++++|||||++||+.+.+.+++.+.....+ ++|+|++||+++.+.. ||++++|++|+
T Consensus 120 ~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 120 DVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999998766655555 7899999999999985 89999999985
No 324
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8e-34 Score=287.61 Aligned_cols=195 Identities=27% Similarity=0.405 Sum_probs=159.9
Q ss_pred EEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe--------EEEEeCCC
Q 000674 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------IAYVSQTS 667 (1358)
Q Consensus 596 ~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g~--------i~yv~Q~~ 667 (1358)
.+++.+.+|+... .++|+|+|++|.+||+++++||+||||||||+.++|+++|..|+|.++|+ -|.|+|++
T Consensus 5 ~~~~~sl~y~g~~-~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~ 83 (259)
T COG4525 5 NVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNE 83 (259)
T ss_pred ehhheEEecCCcc-hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccC
Confidence 4567788887653 56999999999999999999999999999999999999999999999874 69999997
Q ss_pred CC-CCCCHHHHHhcCCC---CCHH-H---HHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 000674 668 WI-QSGSIRDNILYGKP---MDKA-R---YDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1358)
Q Consensus 668 ~~-~~~tv~eni~~g~~---~~~~-~---~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~ 739 (1358)
-+ +..++.||+.||.. .++. | ..+.+...+|.+. + .....+||||||||+.|||||..+|+
T Consensus 84 ~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~-------~----~~~i~qLSGGmrQRvGiARALa~eP~ 152 (259)
T COG4525 84 ALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGA-------E----HKYIWQLSGGMRQRVGIARALAVEPQ 152 (259)
T ss_pred ccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccc-------c----ccceEeecchHHHHHHHHHHhhcCcc
Confidence 64 67899999999954 3332 2 2223333333221 1 25678899999999999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhh-ccCeEEEEe--CCeEEEecCh
Q 000674 740 IYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLE--GGQITQSGNY 802 (1358)
Q Consensus 740 illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~--~G~i~~~g~~ 802 (1358)
.++||||++|||+-+.+++-+.+...+. .||.+++|||+++..- -+++++||+ .|+|++.-++
T Consensus 153 ~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 153 LLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred eEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence 9999999999999999998776666553 6999999999999865 489999997 6899876443
No 325
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=2.6e-33 Score=316.05 Aligned_cols=193 Identities=25% Similarity=0.406 Sum_probs=160.2
Q ss_pred EEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEE
Q 000674 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAY 662 (1358)
Q Consensus 596 ~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~i~y 662 (1358)
+++|+++. .+|+|+||++++||+++|+|+||||||||+++|+|..++ +|+|.++| .++|
T Consensus 2 ~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 2 QLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred cccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEE
Confidence 45666663 279999999999999999999999999999999999864 99999876 2899
Q ss_pred EeCCCC-CCCCCHHHHHhcCCCC--C----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHh
Q 000674 663 VSQTSW-IQSGSIRDNILYGKPM--D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1358)
Q Consensus 663 v~Q~~~-~~~~tv~eni~~g~~~--~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~ 735 (1358)
++|++. .++.|++||+.++... + .++..++++..++...++ ..+..||||||||++||||++
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~ 142 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLG-----------RSVNQLSGGEWQRVRLAAVVL 142 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHHh
Confidence 999975 5678999999986432 1 224455666666643332 467789999999999999999
Q ss_pred c-------CCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHh
Q 000674 736 N-------DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1358)
Q Consensus 736 ~-------~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1358)
+ +|+++||||||++||+...+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 143 ~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 143 QVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred ccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 8 679999999999999999999887665544568999999999998765 89999999999999999988754
No 326
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.3e-33 Score=303.32 Aligned_cols=160 Identities=29% Similarity=0.488 Sum_probs=144.3
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------~ 659 (1358)
.++++|++++| +++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 48899999987 79999999999999999999999999999999999999999998876 3
Q ss_pred EEEEeCCC----CCCCCCHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHh
Q 000674 660 IAYVSQTS----WIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1358)
Q Consensus 660 i~yv~Q~~----~~~~~tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~ 735 (1358)
++|++|++ ..++.|++||+.++.. ||||||||++||||++
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~ 120 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLA 120 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHc
Confidence 89999985 3556899999987421 9999999999999999
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeE
Q 000674 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1358)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1358)
.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++
T Consensus 121 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 121 RDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999887665544468999999999998877 899999999974
No 327
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-33 Score=298.97 Aligned_cols=158 Identities=39% Similarity=0.646 Sum_probs=144.0
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~i~ 661 (1358)
++++|+++.|+.. ..++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4688999999753 23689999999999999999999999999999999999999999999877 389
Q ss_pred EEeCCCCCCCCCHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEE
Q 000674 662 YVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741 (1358)
Q Consensus 662 yv~Q~~~~~~~tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~il 741 (1358)
|++|++.+++.|++||+ ||||||||++||||++.+|+++
T Consensus 80 ~~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~ll 118 (171)
T cd03228 80 YVPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPIL 118 (171)
T ss_pred EEcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEE
Confidence 99999988888999997 9999999999999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCe
Q 000674 742 LFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1358)
Q Consensus 742 lLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~ 795 (1358)
||||||++||+.+.+++.+.+... .+++|+|++||+++.++.||++++|++|+
T Consensus 119 llDEP~~gLD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 119 ILDEATSALDPETEALILEALRAL-AKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999999987765544 45799999999999998899999999985
No 328
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=1.9e-33 Score=312.22 Aligned_cols=192 Identities=28% Similarity=0.336 Sum_probs=154.3
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeC-CCCC-CCC
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQ-TSWI-QSG 672 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g~i~yv~Q-~~~~-~~~ 672 (1358)
+.++|.+..|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|...+..+ ...+ ++.
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 99 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPEL 99 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCC
Confidence 456677777753 46999999999999999999999999999999999999999999999997544333 3333 467
Q ss_pred CHHHHHhcCCC---CCHH----HHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcC
Q 000674 673 SIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1358)
Q Consensus 673 tv~eni~~g~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDe 745 (1358)
|++||+.++.. .+.+ +..++++..++.+.+ .....+||||||||++||||++++|+++||||
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~laral~~~p~llllDE 168 (224)
T cd03220 100 TGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFI-----------DLPVKTYSSGMKARLAFAIATALEPDILLIDE 168 (224)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999986532 1221 233344444443222 24567899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEec
Q 000674 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1358)
Q Consensus 746 p~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1358)
||++||+.+.+.+++.+.....+++|+|++||+++.+.. +|++++|++|++++.|
T Consensus 169 P~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 169 VLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999888766554567899999999999875 8999999999998765
No 329
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-33 Score=355.17 Aligned_cols=206 Identities=19% Similarity=0.279 Sum_probs=172.0
Q ss_pred CcEEEEeeEEEeCCCC--------CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------
Q 000674 593 RSVKIQEGNFSWDPEL--------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~--------~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------ 658 (1358)
..++++|+++.|+... ..++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~ 391 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL 391 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC
Confidence 4589999999996311 24689999999999999999999999999999999999999999999876
Q ss_pred ----------eEEEEeCCCC---CCCCCHHHHHhcCC---CC-CH----HHHHHHHHHhccHHHHhcCCCCCCccccCCC
Q 000674 659 ----------SIAYVSQTSW---IQSGSIRDNILYGK---PM-DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRG 717 (1358)
Q Consensus 659 ----------~i~yv~Q~~~---~~~~tv~eni~~g~---~~-~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g 717 (1358)
+|+|++|+|. .++.||.||+.++. .. .. ++..+.++.+++..+. ...+.
T Consensus 392 ~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~----------~~~~~ 461 (623)
T PRK10261 392 SPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEH----------AWRYP 461 (623)
T ss_pred CHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHH----------hhCCc
Confidence 3899999983 35679999997642 11 11 3445566666664221 12556
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCe
Q 000674 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1358)
Q Consensus 718 ~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1358)
.+|||||||||+||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|+||||++.+.. ||+|++|++|+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 78999999999999999999999999999999999999999877665544 38999999999999876 89999999999
Q ss_pred EEEecChHHHHhc
Q 000674 796 ITQSGNYQELLLA 808 (1358)
Q Consensus 796 i~~~g~~~~l~~~ 808 (1358)
|++.|+.+++..+
T Consensus 542 iv~~g~~~~i~~~ 554 (623)
T PRK10261 542 IVEIGPRRAVFEN 554 (623)
T ss_pred EEEecCHHHHhcC
Confidence 9999999998754
No 330
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=2.3e-33 Score=314.26 Aligned_cols=180 Identities=24% Similarity=0.364 Sum_probs=148.2
Q ss_pred CccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEEEe-CCCCC-CCCCHH
Q 000674 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAYVS-QTSWI-QSGSIR 675 (1358)
Q Consensus 610 ~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------------~i~yv~-Q~~~~-~~~tv~ 675 (1358)
+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|++ |++.+ +..|++
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~ 113 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVI 113 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHH
Confidence 4699999999999999999999999999999999999999999998876 389998 55555 467999
Q ss_pred HHHhcCCC---CCHH----HHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCC
Q 000674 676 DNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFS 748 (1358)
Q Consensus 676 eni~~g~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep~s 748 (1358)
||+.+... .+.+ +..+.++.+++.+.. ..+..+||||||||++||||++.+|+++||||||+
T Consensus 114 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 182 (236)
T cd03267 114 DSFYLLAAIYDLPPARFKKRLDELSELLDLEELL-----------DTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTI 182 (236)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 99976421 2222 223344444443322 24567899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEec
Q 000674 749 AVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1358)
Q Consensus 749 ~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1358)
+||+.+.+++.+.+..... +++|+|++||+++++.. ||++++|++|++++.|
T Consensus 183 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 183 GLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999876655433 47899999999999876 8999999999998754
No 331
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=5.9e-33 Score=314.52 Aligned_cols=198 Identities=22% Similarity=0.307 Sum_probs=161.6
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCC--ccCCCcEEEEcC-------------
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE--IPKISGTVNLYG------------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~--~~~~~G~i~~~g------------- 658 (1358)
.++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+ ++|++|+|.++|
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 5899999999963 3699999999999999999999999999999999998 579999998865
Q ss_pred -eEEEEeCCCCCCC-CCHHHHHhcCCC----------CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCC-CCC
Q 000674 659 -SIAYVSQTSWIQS-GSIRDNILYGKP----------MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGL-NLS 721 (1358)
Q Consensus 659 -~i~yv~Q~~~~~~-~tv~eni~~g~~----------~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~-~LS 721 (1358)
.++|++|++.++. .|+++|+.++.. .+. ++..+.++.+++.+. ..+.... .||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~~LS 153 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPS----------FLSRNVNEGFS 153 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchh----------hhccccccCCC
Confidence 2789999987654 589999876421 011 122334444444311 1224444 599
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc--cCeEEEEeCCeEEEe
Q 000674 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE--VDRILVLEGGQITQS 799 (1358)
Q Consensus 722 GGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~--~d~i~~l~~G~i~~~ 799 (1358)
||||||++||||++++|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++++.. +|++++|++|++++.
T Consensus 154 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999887665544468999999999999875 799999999999999
Q ss_pred cChHH
Q 000674 800 GNYQE 804 (1358)
Q Consensus 800 g~~~~ 804 (1358)
|+++.
T Consensus 234 ~~~~~ 238 (252)
T CHL00131 234 GDAEL 238 (252)
T ss_pred cChhh
Confidence 98874
No 332
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.4e-33 Score=305.97 Aligned_cols=183 Identities=25% Similarity=0.296 Sum_probs=156.5
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------------~i~y 662 (1358)
++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++| +++|
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEE
Confidence 678999999963 4699999999999999999999999999999999999999999999876 3899
Q ss_pred EeCCCCCC-CCCHHHHHhcCCC----CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcC
Q 000674 663 VSQTSWIQ-SGSIRDNILYGKP----MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1358)
Q Consensus 663 v~Q~~~~~-~~tv~eni~~g~~----~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~ 737 (1358)
++|++.++ +.|++||+.++.+ .++++.+++++.+++....+ .+..+||||||||++||||++++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFED-----------VPVRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhh-----------CChhhcCHHHHHHHHHHHHHhcC
Confidence 99998765 4799999987532 23456677777777764432 45678999999999999999999
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhcc-CeEEEE
Q 000674 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVL 791 (1358)
Q Consensus 738 ~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~-d~i~~l 791 (1358)
|++++|||||++||+.+.+.+.+.+.....+++|+|++||+++++..| +|++++
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999998876555445688999999999999886 677766
No 333
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.9e-34 Score=281.39 Aligned_cols=179 Identities=26% Similarity=0.381 Sum_probs=155.6
Q ss_pred CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEEEeCCCCCCCCCHH
Q 000674 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWIQSGSIR 675 (1358)
Q Consensus 609 ~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~i~yv~Q~~~~~~~tv~ 675 (1358)
+.++|+++||++.+||..+|+||+|||||||++++.-+.+|++|++.+.| +|+||.|.|-+|.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 45799999999999999999999999999999999999999999999988 49999999999999999
Q ss_pred HHHhcCC-----CCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q 000674 676 DNILYGK-----PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAV 750 (1358)
Q Consensus 676 eni~~g~-----~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep~s~l 750 (1358)
||+.|.. ..|.+.....++..++.. +.+.++..+||||+|||++|+|-|---|+|+|||||||||
T Consensus 95 DNlifP~~~r~rr~dr~aa~~llar~~l~~----------~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAALDLLARFALPD----------SILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hccccchHHhccCCChHHHHHHHHHcCCch----------hhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 9999973 345555555555544432 3445788899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhHh-cCCcEEEEEcCCcch-hhccCeEEEEeCCeEE
Q 000674 751 DAHTAATLFNECVMAA-LEKKTVILVTHQVEF-LSEVDRILVLEGGQIT 797 (1358)
Q Consensus 751 D~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~-l~~~d~i~~l~~G~i~ 797 (1358)
|+++++.|-+.+.+.. .++..++.||||.+. +.++|+++.+..|++-
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 9999999866655544 467899999999988 7789999999999774
No 334
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-33 Score=309.29 Aligned_cols=208 Identities=24% Similarity=0.400 Sum_probs=167.6
Q ss_pred EEEEeeEEEeCCCC-CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-C----CCcEEEEcC----------
Q 000674 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-K----ISGTVNLYG---------- 658 (1358)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~-~----~~G~i~~~g---------- 658 (1358)
++++|.+.+|.... ...+++||||++++||+++|||.+||||||+.++|+|+++ + .+|+|.++|
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 47888888887543 3579999999999999999999999999999999999998 3 578998876
Q ss_pred -------eEEEEeCCCCC---CCCCHHHHHh----cCCCC--C---HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCC
Q 000674 659 -------SIAYVSQTSWI---QSGSIRDNIL----YGKPM--D---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1358)
Q Consensus 659 -------~i~yv~Q~~~~---~~~tv~eni~----~g~~~--~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~ 719 (1358)
.|||++|+|-- +-.||.+-+. ..... . .++..+.++..++.+.-+ .....+.+
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~--------~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPER--------RLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHH--------HHhhCCcc
Confidence 49999999852 3347766553 22111 1 223444555555543211 23467889
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEE
Q 000674 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1358)
Q Consensus 720 LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1358)
|||||||||.||.|+..+|+++|.||||+|||..++.+|.+.+.+... .|.|+|+||||+..+.+ ||||+||..|+|+
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 999999999999999999999999999999999999999887665543 68999999999999876 8999999999999
Q ss_pred EecChHHHHhcCc
Q 000674 798 QSGNYQELLLAGT 810 (1358)
Q Consensus 798 ~~g~~~~l~~~~~ 810 (1358)
|.|+.+++.++..
T Consensus 234 E~g~~~~i~~~P~ 246 (316)
T COG0444 234 EEGPVEEIFKNPK 246 (316)
T ss_pred EeCCHHHHhcCCC
Confidence 9999999987654
No 335
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=7e-33 Score=305.70 Aligned_cols=187 Identities=22% Similarity=0.298 Sum_probs=155.6
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------eEEE
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAY 662 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g----------~i~y 662 (1358)
..++++|++++|+. +++++|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++| .++|
T Consensus 10 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~ 86 (214)
T PRK13543 10 PLLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAY 86 (214)
T ss_pred ceEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEE
Confidence 45899999999964 3699999999999999999999999999999999999999999999987 2899
Q ss_pred EeCCCCCCC-CCHHHHHhcCCCC----CHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcC
Q 000674 663 VSQTSWIQS-GSIRDNILYGKPM----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1358)
Q Consensus 663 v~Q~~~~~~-~tv~eni~~g~~~----~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~ 737 (1358)
++|++.++. .|++||+.++... .+++.++.++..++... ...+..+||||||||++||||++.+
T Consensus 87 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~laral~~~ 155 (214)
T PRK13543 87 LGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGY-----------EDTLVRQLSAGQKKRLALARLWLSP 155 (214)
T ss_pred eecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhh-----------ccCChhhCCHHHHHHHHHHHHHhcC
Confidence 999987665 5999999764321 12233344444444322 2356678999999999999999999
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeC
Q 000674 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEG 793 (1358)
Q Consensus 738 ~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~ 793 (1358)
|++++|||||++||+...+.+.+.+.....+|+|+|++||+++.+.. ||++++++.
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 156 APLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 99999999999999999999887665555568999999999999876 899999864
No 336
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-34 Score=291.70 Aligned_cols=200 Identities=28% Similarity=0.438 Sum_probs=172.4
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~i~ 661 (1358)
|+++|++.+|+. +.+++|+|++|++|.+++++||||+||||||+++.+++++++|+|.++| +++
T Consensus 2 I~i~nv~K~y~~---~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYGT---KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhCC---EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 678999999974 5799999999999999999999999999999999999999999999998 377
Q ss_pred EEeCCCCCC-CCCHHHHHhcCC-CC--------CHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000674 662 YVSQTSWIQ-SGSIRDNILYGK-PM--------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1358)
Q Consensus 662 yv~Q~~~~~-~~tv~eni~~g~-~~--------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 731 (1358)
..-|+..+. ..||||-+.||+ || |+...+++++...|++ + .+ +.-.+||||||||.-+|
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~-l---~d-------ryLd~LSGGQrQRAfIA 147 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLED-L---SD-------RYLDELSGGQRQRAFIA 147 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccc-h---HH-------HhHHhcccchhhhhhhh
Confidence 888887764 669999999996 33 3445556666555532 2 11 34567999999999999
Q ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhc
Q 000674 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1358)
..+++|.|.++||||+++||.+....+++.+.+... -|||+|+|-||.++... +|+|+.|++|+++.+|+++|+.+.
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 999999999999999999999999999987766554 38999999999999975 899999999999999999999854
No 337
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.5e-33 Score=303.34 Aligned_cols=182 Identities=24% Similarity=0.334 Sum_probs=152.2
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------------~i~y 662 (1358)
++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++| +++|
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEE
Confidence 678999999963 4699999999999999999999999999999999999999999999876 3899
Q ss_pred EeCCCCC-CCCCHHHHHhcCCCC--CHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 000674 663 VSQTSWI-QSGSIRDNILYGKPM--DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1358)
Q Consensus 663 v~Q~~~~-~~~tv~eni~~g~~~--~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~ 739 (1358)
++|++.+ ++.|++||+.++... ++.+..+.++..++... ...+..+||||||||++||||++++|+
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHL-----------IDYPCGLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchh-----------hhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 9999877 468999999986321 22344445554444321 124556899999999999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEE
Q 000674 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILV 790 (1358)
Q Consensus 740 illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~ 790 (1358)
++||||||++||+.+.+.+.+.+.....+++|+|++||+.+.+..+|.-++
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 999999999999999999887666544568999999999999999987543
No 338
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=8.3e-33 Score=302.06 Aligned_cols=183 Identities=25% Similarity=0.367 Sum_probs=155.8
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------------~i~y 662 (1358)
++++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++| +++|
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEE
Confidence 468999999964 4689999999999999999999999999999999999999999998876 4899
Q ss_pred EeCCCCCC-CCCHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000674 663 VSQTSWIQ-SGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1358)
Q Consensus 663 v~Q~~~~~-~~tv~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~i 740 (1358)
++|++.++ +.|++||+.+..+ .++++.+++++..++....+ .+..+||||||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-----------RPVAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhc-----------CchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99998764 6899999987643 34566677777777764332 45678999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEE
Q 000674 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVL 791 (1358)
Q Consensus 741 llLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l 791 (1358)
+||||||++||+...+.+.+.+.....+|+|+|++||+...+.. +|+++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999887665544568999999999887665 7888776
No 339
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1.3e-32 Score=310.96 Aligned_cols=198 Identities=24% Similarity=0.307 Sum_probs=154.9
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCc--cCCCcEEEEcC--------------
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLYG-------------- 658 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~--~~~~G~i~~~g-------------- 658 (1358)
++++|+++.|+. .++++|+||+|++||+++|+|+||||||||+++|+|+. +|++|+|.++|
T Consensus 2 i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 688999999973 46999999999999999999999999999999999995 69999998876
Q ss_pred eEEEEeCCCCCCC-CCHHHHHhcCC-------C---CC----HHHHHHHHHHhccHHHHhcCCCCCCccccCCC-CCCCh
Q 000674 659 SIAYVSQTSWIQS-GSIRDNILYGK-------P---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRG-LNLSG 722 (1358)
Q Consensus 659 ~i~yv~Q~~~~~~-~tv~eni~~g~-------~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g-~~LSG 722 (1358)
.++|++|++.++. .|..+++.+.. . .+ .++.++.++..+ ++.+..+ ..+ .+|||
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~---~~~~~~LS~ 148 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLK-------MPEDLLT---RSVNVGFSG 148 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcC-------CChhhcc---cCCCCCCCH
Confidence 2899999987543 35555543211 0 01 011122222222 2222222 223 37999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc--cCeEEEEeCCeEEEec
Q 000674 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE--VDRILVLEGGQITQSG 800 (1358)
Q Consensus 723 GQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~--~d~i~~l~~G~i~~~g 800 (1358)
|||||++||||++++|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++++.. +|++++|++|++++.|
T Consensus 149 G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g 228 (248)
T PRK09580 149 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 228 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeC
Confidence 99999999999999999999999999999999999877554444457999999999999876 7999999999999999
Q ss_pred ChHHH
Q 000674 801 NYQEL 805 (1358)
Q Consensus 801 ~~~~l 805 (1358)
+++..
T Consensus 229 ~~~~~ 233 (248)
T PRK09580 229 DFTLV 233 (248)
T ss_pred CHHHH
Confidence 98754
No 340
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-33 Score=274.04 Aligned_cols=199 Identities=30% Similarity=0.414 Sum_probs=167.5
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------- 658 (1358)
+|.+++.+|.|.. ..+|-||+|+.+.||.+.+.||+|+|||||++.+.=+.-|.+|+..+.|
T Consensus 2 sirv~~in~~yg~---~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGA---HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEccccccccc---chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 5889999999985 3689999999999999999999999999999999888889999998865
Q ss_pred ----eEEEEeCCCCC-CCCCHHHHHhc------CCCCC--HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHH
Q 000674 659 ----SIAYVSQTSWI-QSGSIRDNILY------GKPMD--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1358)
Q Consensus 659 ----~i~yv~Q~~~~-~~~tv~eni~~------g~~~~--~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 725 (1358)
++|.|+|+-.+ +..||.||+.- |.+.+ ..+-.+.++...|.+..+. .+..|||||+
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr-----------~plhlsggqq 147 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADR-----------YPLHLSGGQQ 147 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhcccccccc-----------Cceecccchh
Confidence 49999999766 56799999864 22222 2233445555555544443 4568999999
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHH
Q 000674 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1358)
Q Consensus 726 qRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1358)
|||+||||++.+|+++++||||+||||+...++.+.+......|-|-++|||.+++.++ +.+|+.|++|+|++.|+.+.
T Consensus 148 qrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred hhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhh
Confidence 99999999999999999999999999999999887665555678999999999999987 79999999999999998776
Q ss_pred HH
Q 000674 805 LL 806 (1358)
Q Consensus 805 l~ 806 (1358)
+.
T Consensus 228 ft 229 (242)
T COG4161 228 FT 229 (242)
T ss_pred cc
Confidence 54
No 341
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=1.3e-32 Score=300.28 Aligned_cols=172 Identities=28% Similarity=0.369 Sum_probs=148.9
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCC--ccCCCcEEEEcC--------------
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE--IPKISGTVNLYG-------------- 658 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~--~~~~~G~i~~~g-------------- 658 (1358)
++++|++++|+. .++++|+||++++||+++|+|+||||||||+++|+|+ .+|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 468899999973 4699999999999999999999999999999999999 479999999876
Q ss_pred eEEEEeCCCCCCC-CCHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcC
Q 000674 659 SIAYVSQTSWIQS-GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1358)
Q Consensus 659 ~i~yv~Q~~~~~~-~tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~ 737 (1358)
.++|++|++.++. .++++|+ + ....+||||||||++||||++++
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l------------------------~-----------~~~~~LS~G~~qrv~laral~~~ 122 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL------------------------R-----------YVNEGFSGGEKKRNEILQLLLLE 122 (200)
T ss_pred cEEEeecChhhccCccHHHHH------------------------h-----------hccccCCHHHHHHHHHHHHHhcC
Confidence 2999999987665 4666655 0 11247999999999999999999
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhh--ccCeEEEEeCCeEEEecChHHH
Q 000674 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS--EVDRILVLEGGQITQSGNYQEL 805 (1358)
Q Consensus 738 ~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~--~~d~i~~l~~G~i~~~g~~~~l 805 (1358)
|++++|||||++||+.+.+.+++.+.....+++|+|++||+++.+. .||++++|++|++.+.| ..|+
T Consensus 123 p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~ 191 (200)
T cd03217 123 PDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKEL 191 (200)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHH
Confidence 9999999999999999999988766655445899999999999987 58999999999999998 4444
No 342
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=5.2e-33 Score=298.20 Aligned_cols=178 Identities=28% Similarity=0.444 Sum_probs=141.8
Q ss_pred EEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCCCCCCCCHH
Q 000674 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIR 675 (1358)
Q Consensus 596 ~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g~i~yv~Q~~~~~~~tv~ 675 (1358)
+++|+++.|+. .++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.- +.+ ......+
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~--~~~---~~~~~~~ 72 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKD--LAS---LSPKELA 72 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE--CCc---CCHHHHH
Confidence 36899999964 469999999999999999999999999999999999999999999998740 000 0000112
Q ss_pred HHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Q 000674 676 DNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA 755 (1358)
Q Consensus 676 eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~ 755 (1358)
..+.+- .++++.+++.+.++ .++.+||||||||++||||++.+|+++||||||++||+.+.
T Consensus 73 ~~i~~~--------~q~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~ 133 (180)
T cd03214 73 RKIAYV--------PQALELLGLAHLAD-----------RPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQ 133 (180)
T ss_pred HHHhHH--------HHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 222211 11566667765433 45678999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhcC-CcEEEEEcCCcchhhc-cCeEEEEeCCeEEEec
Q 000674 756 ATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1358)
Q Consensus 756 ~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1358)
+.+.+.+.....+ ++|+|++||+++++.. ||++++|++|++.+.|
T Consensus 134 ~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 134 IELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9987765544344 7899999999999855 8999999999998653
No 343
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=7.6e-33 Score=345.91 Aligned_cols=205 Identities=19% Similarity=0.326 Sum_probs=168.3
Q ss_pred CcEEEEeeEEEeCCC--------CCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------
Q 000674 593 RSVKIQEGNFSWDPE--------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~--------~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------ 658 (1358)
..++++|++++|+.. .++++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~ 352 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNL 352 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEcccc
Confidence 358999999999631 12469999999999999999999999999999999999985 899999876
Q ss_pred ----------eEEEEeCCCC--C-CCCCHHHHHhcCCC-----CC----HHHHHHHHHHhccHHHHhcCCCCCCccccCC
Q 000674 659 ----------SIAYVSQTSW--I-QSGSIRDNILYGKP-----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1358)
Q Consensus 659 ----------~i~yv~Q~~~--~-~~~tv~eni~~g~~-----~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~ 716 (1358)
+++|++|++. + .+.|++||+.++.. .+ +++..+.++..++..+. ...+
T Consensus 353 ~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~ 422 (529)
T PRK15134 353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPET----------RHRY 422 (529)
T ss_pred chhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHH----------HhcC
Confidence 2899999972 4 45799999987521 11 12334445555553211 1256
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcC-CcEEEEEcCCcchhhc-cCeEEEEeCC
Q 000674 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGG 794 (1358)
Q Consensus 717 g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G 794 (1358)
..+|||||||||+||||++.+|+++||||||++||+.+.+.+++.+.....+ |+|+|+||||++++.. ||+|++|++|
T Consensus 423 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQG 502 (529)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 7789999999999999999999999999999999999999998876655443 8999999999999875 8999999999
Q ss_pred eEEEecChHHHHhc
Q 000674 795 QITQSGNYQELLLA 808 (1358)
Q Consensus 795 ~i~~~g~~~~l~~~ 808 (1358)
++++.|+.+++.+.
T Consensus 503 ~i~~~~~~~~~~~~ 516 (529)
T PRK15134 503 EVVEQGDCERVFAA 516 (529)
T ss_pred EEEEEcCHHHHhcC
Confidence 99999999988643
No 344
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-33 Score=346.76 Aligned_cols=203 Identities=19% Similarity=0.308 Sum_probs=165.7
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-CCCcEEEEcC-------------
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-KISGTVNLYG------------- 658 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~-~~~G~i~~~g------------- 658 (1358)
..++++|+++.|+...+.++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~ 337 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIA 337 (506)
T ss_pred ceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence 35899999999853223469999999999999999999999999999999999998 5999999876
Q ss_pred -eEEEEeCCC---CC-CCCCHHHHHhcCCC--C------CH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCC
Q 000674 659 -SIAYVSQTS---WI-QSGSIRDNILYGKP--M------DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1358)
Q Consensus 659 -~i~yv~Q~~---~~-~~~tv~eni~~g~~--~------~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 721 (1358)
.++|++|++ .+ .+.|+.||+.++.. + +. ++..+.++.+++.. + ....+..+||
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~--~~~~~~~~LS 407 (506)
T PRK13549 338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKT--------A--SPELAIARLS 407 (506)
T ss_pred CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccC--------C--CcccccccCC
Confidence 289999996 34 46799999987521 1 11 12233334333321 0 1235678999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEec
Q 000674 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1358)
Q Consensus 722 GGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1358)
|||||||+||||+..+|+++||||||++||+.+.+.+++.+.....+|+|+|++|||++.+.. ||++++|++|+++..|
T Consensus 408 gG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~ 487 (506)
T PRK13549 408 GGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDL 487 (506)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999999999987766555568999999999999876 8999999999999999
Q ss_pred ChHHH
Q 000674 801 NYQEL 805 (1358)
Q Consensus 801 ~~~~l 805 (1358)
+.+++
T Consensus 488 ~~~~~ 492 (506)
T PRK13549 488 INHNL 492 (506)
T ss_pred ccccC
Confidence 88765
No 345
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.2e-32 Score=343.73 Aligned_cols=209 Identities=22% Similarity=0.367 Sum_probs=168.2
Q ss_pred CcEEEEeeEEEeCC--CCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEc-C-----------
Q 000674 593 RSVKIQEGNFSWDP--ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY-G----------- 658 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~--~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~-g----------- 658 (1358)
..++++|++++|+. +...++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++ |
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~ 357 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP 357 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccch
Confidence 35899999999963 122469999999999999999999999999999999999999999999984 3
Q ss_pred --------eEEEEeCCCCCC-CCCHHHHHhcCCC--CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChH
Q 000674 659 --------SIAYVSQTSWIQ-SGSIRDNILYGKP--MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1358)
Q Consensus 659 --------~i~yv~Q~~~~~-~~tv~eni~~g~~--~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 723 (1358)
+++|++|++.++ +.|++||+.++.. ... ++..+.++.+++...- .......+..+||||
T Consensus 358 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~~~~~LSgG 431 (520)
T TIGR03269 358 DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEK------AEEILDKYPDELSEG 431 (520)
T ss_pred hhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCcc------chhhhhCChhhCCHH
Confidence 289999998655 5799999986321 111 2233344444443100 000123667899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecC
Q 000674 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1358)
Q Consensus 724 QkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1358)
|||||+||||++.+|+++||||||++||+...+.+.+.+..... .|+|+|+||||++++.. ||++++|++|++++.|+
T Consensus 432 q~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~ 511 (520)
T TIGR03269 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511 (520)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999877655444 38999999999999876 89999999999999999
Q ss_pred hHHHHh
Q 000674 802 YQELLL 807 (1358)
Q Consensus 802 ~~~l~~ 807 (1358)
++++.+
T Consensus 512 ~~~~~~ 517 (520)
T TIGR03269 512 PEEIVE 517 (520)
T ss_pred HHHHHh
Confidence 888753
No 346
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.4e-32 Score=308.37 Aligned_cols=192 Identities=23% Similarity=0.340 Sum_probs=156.6
Q ss_pred EEeCCCCCCccceeEEEEee-----CCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-eEEEEeCCCC-CCCCCH
Q 000674 602 FSWDPELAIPTLRGVNLDIK-----WAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSW-IQSGSI 674 (1358)
Q Consensus 602 f~~~~~~~~~~l~~i~l~i~-----~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-~i~yv~Q~~~-~~~~tv 674 (1358)
|+|++. ...++|++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++| +++|++|++. .++.|+
T Consensus 1 ~~y~~~--~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv 78 (246)
T cd03237 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTV 78 (246)
T ss_pred CCCccc--ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCH
Confidence 567643 347888888887 6899999999999999999999999999999999999 8999999986 468899
Q ss_pred HHHHhcCCC-C--CHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Q 000674 675 RDNILYGKP-M--DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVD 751 (1358)
Q Consensus 675 ~eni~~g~~-~--~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD 751 (1358)
+||+.+... . ...+..++++.+++...++ .+..+||||||||++||||++.+|+++||||||++||
T Consensus 79 ~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~-----------~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD 147 (246)
T cd03237 79 RDLLSSITKDFYTHPYFKTEIAKPLQIEQILD-----------REVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147 (246)
T ss_pred HHHHHHHhhhccccHHHHHHHHHHcCCHHHhh-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 999975422 1 1233455666666654332 5667899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEE--EecChHHHH
Q 000674 752 AHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQIT--QSGNYQELL 806 (1358)
Q Consensus 752 ~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~--~~g~~~~l~ 806 (1358)
+.+...+.+.+..... .++|+|+|||+++.+.. ||++++|+++..+ ..++++++.
T Consensus 148 ~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 148 VEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 9999998776554433 48999999999999886 8999999775444 556666654
No 347
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.5e-32 Score=289.35 Aligned_cols=161 Identities=27% Similarity=0.412 Sum_probs=131.7
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCCCCCCCCH
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSI 674 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g~i~yv~Q~~~~~~~tv 674 (1358)
++++|++++|+. .++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.- +. ..+.
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~--~~------~~~~ 69 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKE--VS------FASP 69 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE--CC------cCCH
Confidence 468999999974 369999999999999999999999999999999999999999999998740 00 0000
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Q 000674 675 RDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754 (1358)
Q Consensus 675 ~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~ 754 (1358)
++ .+. ..+... ..||||||||++||||++++|++++|||||++||+.+
T Consensus 70 ~~-----------~~~---------~~i~~~------------~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~ 117 (163)
T cd03216 70 RD-----------ARR---------AGIAMV------------YQLSVGERQMVEIARALARNARLLILDEPTAALTPAE 117 (163)
T ss_pred HH-----------HHh---------cCeEEE------------EecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHH
Confidence 00 000 000000 0199999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEE
Q 000674 755 AATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1358)
Q Consensus 755 ~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1358)
.+++.+.+.....+++|+|++||+++.+.. ||++++|++|++++
T Consensus 118 ~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 118 VERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999987765554568999999999998876 89999999999874
No 348
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.5e-32 Score=299.66 Aligned_cols=184 Identities=23% Similarity=0.300 Sum_probs=156.3
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------eEEEEe
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAYVS 664 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g----------~i~yv~ 664 (1358)
++++|+++.|+. ..+++|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++| .++|++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (207)
T PRK13539 3 LEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLG 79 (207)
T ss_pred EEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEec
Confidence 789999999964 3589999999999999999999999999999999999999999999887 379999
Q ss_pred CCCCC-CCCCHHHHHhcCCC---CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000674 665 QTSWI-QSGSIRDNILYGKP---MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1358)
Q Consensus 665 Q~~~~-~~~tv~eni~~g~~---~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~i 740 (1358)
|++.+ ++.|++||+.+... .++++..+.++..++....+ .+..+||||||||++||||++++|++
T Consensus 80 ~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~al~~~p~l 148 (207)
T PRK13539 80 HRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH-----------LPFGYLSAGQKRRVALARLLVSNRPI 148 (207)
T ss_pred CCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHc-----------CChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 87654 57899999976432 23445666777777754332 34568999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeC
Q 000674 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEG 793 (1358)
Q Consensus 741 llLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~ 793 (1358)
+||||||++||+.+.+++.+.+.....+|+|+|++||+++.++. |+++.++.
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 149 WILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 99999999999999999987665555568999999999999988 99887754
No 349
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=1.4e-32 Score=305.25 Aligned_cols=179 Identities=31% Similarity=0.469 Sum_probs=149.6
Q ss_pred EEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe--------EEEEeCCCCC---CCCCHHHHHhcCCC---
Q 000674 618 LDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------IAYVSQTSWI---QSGSIRDNILYGKP--- 683 (1358)
Q Consensus 618 l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g~--------i~yv~Q~~~~---~~~tv~eni~~g~~--- 683 (1358)
|++++||+++|+|+||||||||+++|+|.++|++|+|.++|. ++|++|++.+ ++.|++||+.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 578999999999999999999999999999999999999883 9999999864 35799999987521
Q ss_pred --C------CHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Q 000674 684 --M------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA 755 (1358)
Q Consensus 684 --~------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~ 755 (1358)
+ +.++..++++.+++.+.. ..+..+||||||||++||||++++|++++|||||++||+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~ 149 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLTELA-----------DRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQ 149 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCchhh-----------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 1 112334445555554322 245678999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhc
Q 000674 756 ATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 756 ~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1358)
+.+.+.+.....+|+|+|++||+++.+.. ||+++++ +|++++.|+++++.++
T Consensus 150 ~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~ 202 (223)
T TIGR03771 150 ELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP 202 (223)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence 99988766554568999999999998865 8999999 8999999999988653
No 350
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=2e-32 Score=304.68 Aligned_cols=187 Identities=24% Similarity=0.350 Sum_probs=151.1
Q ss_pred EEEEeeEEEeCCC----CCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEc--C----------
Q 000674 595 VKIQEGNFSWDPE----LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY--G---------- 658 (1358)
Q Consensus 595 i~~~~~~f~~~~~----~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~--g---------- 658 (1358)
++++|++++|+.. ...++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++ |
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 6789999999631 12469999999999999999999999999999999999999999999886 3
Q ss_pred ---------eEEEEeCCCCCC-CCCHHHHHhcCC---CCCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCC
Q 000674 659 ---------SIAYVSQTSWIQ-SGSIRDNILYGK---PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1358)
Q Consensus 659 ---------~i~yv~Q~~~~~-~~tv~eni~~g~---~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 721 (1358)
.++|++|++.++ +.|++||+.++. ..+. ++..++++..++...+ ...++.+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERL----------WHLPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh----------hhCCcccCC
Confidence 389999998764 569999997631 1222 2223334443333211 124577899
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEE
Q 000674 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVL 791 (1358)
Q Consensus 722 GGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l 791 (1358)
||||||++||||++.+|++++|||||++||+++.+.+.+.+.....+|+|+|++||+.+++.. ||+++.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999887665554568999999999998864 8999876
No 351
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=8.1e-33 Score=349.91 Aligned_cols=196 Identities=27% Similarity=0.373 Sum_probs=162.6
Q ss_pred CCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEEcCe----------EEEEeCCCCCC-CCC
Q 000674 608 LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYGS----------IAYVSQTSWIQ-SGS 673 (1358)
Q Consensus 608 ~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~---~G~i~~~g~----------i~yv~Q~~~~~-~~t 673 (1358)
.++++|+|+|+++++||+++|+|||||||||||++|+|+.++. +|+|.++|. +|||+|+++++ +.|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 3567999999999999999999999999999999999999874 799999883 69999999876 569
Q ss_pred HHHHHhcCCCCCH----HHHHHHHHHhccHHHHhcC--CCCCCccccCC--CCCCChHHHHHHHHHHHHhcCCCEEEEcC
Q 000674 674 IRDNILYGKPMDK----ARYDKAIKACALDKDINNF--DHGDLTEIGQR--GLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1358)
Q Consensus 674 v~eni~~g~~~~~----~~~~~~~~~~~l~~dl~~l--~~gd~t~ig~~--g~~LSGGQkqRv~LARal~~~~~illLDe 745 (1358)
|+||+.|+..... .+.++ ....++.++.+ ++..+|.+|+. +..|||||||||+||||++.+|++++|||
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~---~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDE 192 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEK---RERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDE 192 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHH---HHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeC
Confidence 9999998643210 01111 11122233332 33457889974 47899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcc-h-hhccCeEEEEeCCeEEEecChHHHH
Q 000674 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVE-F-LSEVDRILVLEGGQITQSGNYQELL 806 (1358)
Q Consensus 746 p~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~-~-l~~~d~i~~l~~G~i~~~g~~~~l~ 806 (1358)
||||||++++.++.+.+.+...+|+|+|+++|+++ . .+.+|++++|++|++++.|+++++.
T Consensus 193 PtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 193 PTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255 (617)
T ss_pred CCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence 99999999999999888776667999999999986 4 4569999999999999999999885
No 352
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.9e-33 Score=295.02 Aligned_cols=184 Identities=26% Similarity=0.440 Sum_probs=162.7
Q ss_pred eEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------eEEEEeCCCCCC-CCCHHH
Q 000674 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIAYVSQTSWIQ-SGSIRD 676 (1358)
Q Consensus 615 ~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-----------------~i~yv~Q~~~~~-~~tv~e 676 (1358)
++||+.+.-.++||-|++|||||||+++|.|+.+|++|.|.++| +||||+|+.-+| +.||+-
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 68888888789999999999999999999999999999999988 499999999875 679999
Q ss_pred HHhcCCCCC-HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Q 000674 677 NILYGKPMD-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA 755 (1358)
Q Consensus 677 ni~~g~~~~-~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~ 755 (1358)
|+.||.... ...++++++..++..-+++ .+.+||||+||||+|+|||..+|+++|||||+|+||...+
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R-----------~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDR-----------YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhh-----------CCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 999998754 5678888888888887775 4568999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhcC-CcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhcC
Q 000674 756 ATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1358)
Q Consensus 756 ~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1358)
++|.-.+-+...+ +--+++|||.++++.+ ||+|++|++|++...|..+++..+.
T Consensus 165 ~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 165 REILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred hHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 9987665444333 5679999999988765 9999999999999999999998654
No 353
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.3e-30 Score=348.67 Aligned_cols=206 Identities=19% Similarity=0.292 Sum_probs=175.7
Q ss_pred CCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------
Q 000674 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1358)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------------ 658 (1358)
.+..++++|+++.|+.+ .+++++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 1934 ~~~~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~ 2012 (2272)
T TIGR01257 1934 KTDILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQ 2012 (2272)
T ss_pred CCceEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhh
Confidence 34579999999999742 25799999999999999999999999999999999999999999999987
Q ss_pred eEEEEeCCCCCC-CCCHHHHHhcCC---CCCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000674 659 SIAYVSQTSWIQ-SGSIRDNILYGK---PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1358)
Q Consensus 659 ~i~yv~Q~~~~~-~~tv~eni~~g~---~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 730 (1358)
.||||||++.++ +.|++||+.+.. ...+ ++.+++++.++|.+..+ ++..+||||||||+++
T Consensus 2013 ~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~d-----------k~~~~LSGGqKqRLsl 2081 (2272)
T TIGR01257 2013 NMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYAD-----------RLAGTYSGGNKRKLST 2081 (2272)
T ss_pred hEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhc-----------CChhhCCHHHHHHHHH
Confidence 389999997665 679999997631 1222 23345566676654333 5677899999999999
Q ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhc
Q 000674 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1358)
|||++.+|++++|||||+|||+..++.+++.+.....+|+|+|++||+++.+.. ||||++|++|++...|+++++.++
T Consensus 2082 A~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2082 AIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 999999999999999999999999999998766655568999999999999876 999999999999999999998653
No 354
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-32 Score=338.27 Aligned_cols=200 Identities=24% Similarity=0.382 Sum_probs=168.7
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCC--
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSW-- 668 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--~i~yv~Q~~~-- 668 (1358)
..++++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++| ++||++|++.
T Consensus 318 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~ 394 (530)
T PRK15064 318 NALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYD 394 (530)
T ss_pred ceEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEccccccc
Confidence 46999999999964 3699999999999999999999999999999999999999999999987 6999999974
Q ss_pred CC-CCCHHHHHhcCC--CCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcC
Q 000674 669 IQ-SGSIRDNILYGK--PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1358)
Q Consensus 669 ~~-~~tv~eni~~g~--~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDe 745 (1358)
++ +.|++||+.+.. ..++++.++.++..++..+. ...++.+||||||||++||||++++|+++||||
T Consensus 395 ~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGq~qrv~la~al~~~p~lllLDE 464 (530)
T PRK15064 395 FENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDD----------IKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDE 464 (530)
T ss_pred CCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhH----------hcCcccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 33 479999986521 22344556667766663221 125678999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEE-EecChHHHHhc
Q 000674 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSGNYQELLLA 808 (1358)
Q Consensus 746 p~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~g~~~~l~~~ 808 (1358)
||++||+.+.+.+.+.+.. . +.|+|+||||++++.. ||++++|++|+++ +.|+++++.+.
T Consensus 465 Pt~~LD~~~~~~l~~~l~~-~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 465 PTNHMDMESIESLNMALEK-Y--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred CCCCCCHHHHHHHHHHHHH-C--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 9999999999998875543 2 4599999999999876 8999999999998 88999887654
No 355
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.8e-32 Score=295.46 Aligned_cols=179 Identities=19% Similarity=0.271 Sum_probs=150.5
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------eEEEEeC
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------SIAYVSQ 665 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g---------~i~yv~Q 665 (1358)
++++|++++|+. +.++ ++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++| .++|++|
T Consensus 2 l~~~~l~~~~~~---~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGH 77 (195)
T ss_pred eEEEEeeEEECC---cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccC
Confidence 678999999963 3344 59999999999999999999999999999999999999999987 2899999
Q ss_pred CCCC-CCCCHHHHHhcCCCC--CHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEE
Q 000674 666 TSWI-QSGSIRDNILYGKPM--DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742 (1358)
Q Consensus 666 ~~~~-~~~tv~eni~~g~~~--~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~ill 742 (1358)
++.+ ++.|++||+.++... ..++..++++.+++.+..+ +++.+||||||||++||||++++|++++
T Consensus 78 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rl~la~al~~~p~~ll 146 (195)
T PRK13541 78 NLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLD-----------EKCYSLSSGMQKIVAIARLIACQSDLWL 146 (195)
T ss_pred CcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhc-----------cChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8754 678999999875432 2345556666666654332 5677999999999999999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeE
Q 000674 743 FDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRI 788 (1358)
Q Consensus 743 LDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i 788 (1358)
|||||++||+.+.+.+.+.+.....+++|+|++||+++.++.+|-+
T Consensus 147 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~ 192 (195)
T PRK13541 147 LDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQIL 192 (195)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhhee
Confidence 9999999999999988776543445689999999999999998865
No 356
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=5.2e-32 Score=295.23 Aligned_cols=180 Identities=24% Similarity=0.305 Sum_probs=148.2
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------------~i~y 662 (1358)
++++|+++.|+. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEE
Confidence 468899999964 4699999999999999999999999999999999999999999999877 3799
Q ss_pred EeCCCCCC-CCCHHHHHhcCCCC---CHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000674 663 VSQTSWIQ-SGSIRDNILYGKPM---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1358)
Q Consensus 663 v~Q~~~~~-~~tv~eni~~g~~~---~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~ 738 (1358)
++|++.++ +.|++||+.+.... ++++..++++..++.+.++ .+..+||||||||++||||++++|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFED-----------LPAAQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhc-----------CChhhcCHHHHHHHHHHHHHhcCC
Confidence 99998765 47999999764321 2334566677666654432 456789999999999999999999
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEE
Q 000674 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRIL 789 (1358)
Q Consensus 739 ~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~ 789 (1358)
++++|||||++||+.+.+.+.+.+.....+|+|+|++||+...+. +++++
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~ 196 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EAREL 196 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEe
Confidence 999999999999999999887766554456899999999975432 34443
No 357
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.98 E-value=3.4e-29 Score=290.70 Aligned_cols=452 Identities=17% Similarity=0.193 Sum_probs=292.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHH---HHHHhHHHHHhhHHH-HHHHHHHHHHHHH
Q 000674 331 ESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIV---NYIAVDAYRMGEFPF-WFHLTWSLALQLF 406 (1358)
Q Consensus 331 ~~~~~~~~~~~~~~~~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~iv---Nlms~D~~~i~~~~~-~~~~~w~~plqi~ 406 (1358)
.+....-..|...-+..|.|.-++.-+|++=++-..--+-....+.|. .+++.|++++..... ....+-.+|+.++
T Consensus 135 ~s~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~ 214 (659)
T KOG0060|consen 135 ISLLNALLKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLV 214 (659)
T ss_pred HHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeee
Confidence 344445556778889999999999999998776321100000111122 367889988765433 3345556677777
Q ss_pred HHHHHHHHHHhHH---HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHH
Q 000674 407 LAIGVLFGVVGLG---ALPGLVL--FLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSL 481 (1358)
Q Consensus 407 ~~~~~L~~~lG~~---~l~gl~v--~~~~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~ 481 (1358)
.-.+.+|...||- .+.+-.+ .++.-.+..|+.+++...|+.. -|-|-+. +++..|-..|-+|+-+..-...
T Consensus 215 ~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklE---GdfRy~h-~rlr~NaE~iAFY~g~~~E~~~ 290 (659)
T KOG0060|consen 215 YYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLE---GDFRYKH-SRLRVNAEEIAFYRGGQVEHQR 290 (659)
T ss_pred hhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhh---cchhhhe-eeeeecchhhhhhccCchHHHH
Confidence 7777777766553 3322111 1111122334445444444332 2333332 2344556678888887655544
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHH---HHHHHHHH-HHHHHHhCCCCCCHHHHHHHHH----HHHHHHHHH
Q 000674 482 IESRREKEFKWLSEAQLRK----AYGTVIYWMS---PTIISSVI-FLGCALTGSAPLNASTIFTVLA----TLRSMGEPV 549 (1358)
Q Consensus 482 i~~~R~~El~~l~~~~~~~----~~~~~~~~~~---p~~v~~~~-f~~~~l~~~~~Lt~~~~Ft~l~----lf~~l~~pl 549 (1358)
+++.=+.=++.+++....+ .+..++-+.. +.++.... |.+. . ...++++..++-++ .+.-+...+
T Consensus 291 ~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h--~-y~~~s~aEL~~~i~~na~~~i~Li~~f 367 (659)
T KOG0060|consen 291 TDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGH--V-YDDLSPAELSGLISNNAFVFIYLISAF 367 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeeccc--c-cCCcCHHHHHHHHhhhHHHHHHHHHHH
Confidence 4433333333333322111 1111111111 11111111 1111 1 13567776555443 233344445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-cCCC-------------ccchhc-------ccccCCCCcEEEEeeEEEeCCCC
Q 000674 550 RMIPEALSIMIQVKVSFDRINAFLLD-HELN-------------NDDVRR-------ISLQKSDRSVKIQEGNFSWDPEL 608 (1358)
Q Consensus 550 ~~lp~~i~~~~~a~vS~~Ri~~fL~~-~e~~-------------~~~~~~-------~~~~~~~~~i~~~~~~f~~~~~~ 608 (1358)
..+...-..+.+-..-..||.++++. ++.. .+...+ ......+..|++++++++-|++
T Consensus 368 ~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~- 446 (659)
T KOG0060|consen 368 GRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTN- 446 (659)
T ss_pred HHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCC-
Confidence 55555555555555567788887641 1100 000000 0111245789999999998876
Q ss_pred CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEc--C---eEEEEeCCCCCCCCCHHHHHhcCC-
Q 000674 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY--G---SIAYVSQTSWIQSGSIRDNILYGK- 682 (1358)
Q Consensus 609 ~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~--g---~i~yv~Q~~~~~~~tv~eni~~g~- 682 (1358)
+..+.+|+||+|++|+-+.|+||||||||||++.+.|+.+..+|++.-. | .+-|+||.|....||.||-+.++.
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~ 526 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLK 526 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCc
Confidence 4567888999999999999999999999999999999999999999764 3 499999999999999999999972
Q ss_pred -------CCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Q 000674 683 -------PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA 755 (1358)
Q Consensus 683 -------~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~ 755 (1358)
..+.++..+.++..+|..-++..+.=|+..+-+-...||+|||||++.||-+|++|++-+|||.|||||..++
T Consensus 527 ~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE 606 (659)
T KOG0060|consen 527 AEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVE 606 (659)
T ss_pred cccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHH
Confidence 1356788899999999887776554444444566788999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeC
Q 000674 756 ATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEG 793 (1358)
Q Consensus 756 ~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~ 793 (1358)
..+++.|. ..|-|.|-|.|+.+.-+.-|.++-|+.
T Consensus 607 ~~~Yr~~r---~~giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 607 GALYRKCR---EMGITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHH---HcCCeEEEeccHHHHHhhhhEEEEecC
Confidence 99998774 357899999999998888899999975
No 358
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.98 E-value=3.3e-32 Score=338.90 Aligned_cols=198 Identities=18% Similarity=0.349 Sum_probs=158.7
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------~ 659 (1358)
.++++|+++.|. .+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 589999998642 389999999999999999999999999999999999999999999876 2
Q ss_pred EEEEeCCC----CCCCCCHHHHHhcCCCC------------CHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChH
Q 000674 660 IAYVSQTS----WIQSGSIRDNILYGKPM------------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1358)
Q Consensus 660 i~yv~Q~~----~~~~~tv~eni~~g~~~------------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 723 (1358)
++|++|++ .+.+.|++||+.++... ...... ....+-++.+.... .....+..+||||
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~-~~~~~~~~~LSgG 413 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQ-----RTAENQRELLALKC-HSVNQNITELSGG 413 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHH-----HHHHHHHHhcCCCC-CCccCccccCChH
Confidence 89999984 34467999999876321 111100 01112233332210 0134667889999
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecCh
Q 000674 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1358)
Q Consensus 724 QkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1358)
|||||+||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++|||++.+.. ||++++|++|++++.++.
T Consensus 414 q~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 414 NQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 9999999999999999999999999999999999988666555568999999999998865 899999999999987754
No 359
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.98 E-value=3.6e-32 Score=294.61 Aligned_cols=161 Identities=27% Similarity=0.416 Sum_probs=135.0
Q ss_pred CccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------eEEEEeCCC--CCCCC
Q 000674 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------SIAYVSQTS--WIQSG 672 (1358)
Q Consensus 610 ~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g---------------~i~yv~Q~~--~~~~~ 672 (1358)
+++|+|+||+|++||+++|+||||||||||+++|+|..+|++|+|.++| .++|++|+| .+++.
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 4689999999999999999999999999999999999999999998865 389999998 46778
Q ss_pred CHHHHHhcCC---CCCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcC
Q 000674 673 SIRDNILYGK---PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1358)
Q Consensus 673 tv~eni~~g~---~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDe 745 (1358)
|++||+.++. ..+. ++..+.++..++.+..+ ++..+||||||||++||||++.+|+++||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRE-----------RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhh-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999998752 1222 23444555555543322 4567899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcch
Q 000674 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF 781 (1358)
Q Consensus 746 p~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~ 781 (1358)
||++||+.+.+.+.+.+.....+|+|+|++||++++
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999999887765554568999999999875
No 360
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.98 E-value=3.3e-32 Score=338.28 Aligned_cols=200 Identities=21% Similarity=0.289 Sum_probs=161.6
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-CCcEEEEcC--------------
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-ISGTVNLYG-------------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~-~~G~i~~~g-------------- 658 (1358)
.++++|++++|+.+.+.++++|+||++++||+++|+||||||||||+++|+|..+| ++|+|.++|
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 58999999988432124689999999999999999999999999999999999985 899999876
Q ss_pred eEEEEeCCC----CCCCCCHHHHHhcCCC--------CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCCh
Q 000674 659 SIAYVSQTS----WIQSGSIRDNILYGKP--------MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1358)
Q Consensus 659 ~i~yv~Q~~----~~~~~tv~eni~~g~~--------~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSG 722 (1358)
+++|++|++ .+++.|++||+.++.. .+. ++.++.++.+++..+ ....+..+|||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSg 406 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTA----------SPFLPIGRLSG 406 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCC----------CccCccccCCH
Confidence 289999996 3456799999987521 111 122333333333110 12356788999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecC
Q 000674 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1358)
Q Consensus 723 GQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1358)
|||||++||||++.+|+++||||||++||+.+.+.+++.+.....+|+|+|++|||++++.. ||++++|++|+++..++
T Consensus 407 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~ 486 (500)
T TIGR02633 407 GNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFV 486 (500)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999887665555568999999999999876 89999999999997765
Q ss_pred hH
Q 000674 802 YQ 803 (1358)
Q Consensus 802 ~~ 803 (1358)
.+
T Consensus 487 ~~ 488 (500)
T TIGR02633 487 NH 488 (500)
T ss_pred cc
Confidence 44
No 361
>PLN03211 ABC transporter G-25; Provisional
Probab=99.98 E-value=2.1e-31 Score=336.50 Aligned_cols=191 Identities=26% Similarity=0.358 Sum_probs=159.4
Q ss_pred CccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCC--CcEEEEcC---------eEEEEeCCCCCC-CCCHHHH
Q 000674 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI--SGTVNLYG---------SIAYVSQTSWIQ-SGSIRDN 677 (1358)
Q Consensus 610 ~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~--~G~i~~~g---------~i~yv~Q~~~~~-~~tv~en 677 (1358)
+++|+|+|+++++||+++|+||||||||||+++|+|..+|. +|+|.++| ++|||+|++.++ +.||+||
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 160 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRET 160 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHH
Confidence 56999999999999999999999999999999999999885 89999988 389999998876 5799999
Q ss_pred HhcCC------CCCHH----HHHHHHHHhccHHHHhcCCCCCCccccC-CCCCCChHHHHHHHHHHHHhcCCCEEEEcCC
Q 000674 678 ILYGK------PMDKA----RYDKAIKACALDKDINNFDHGDLTEIGQ-RGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1358)
Q Consensus 678 i~~g~------~~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~-~g~~LSGGQkqRv~LARal~~~~~illLDep 746 (1358)
+.|.. ..+++ +.+++++..+|. +..+|.+|+ .+..||||||||++||||++++|++++||||
T Consensus 161 l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEP 233 (659)
T PLN03211 161 LVFCSLLRLPKSLTKQEKILVAESVISELGLT-------KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 233 (659)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-------hhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCC
Confidence 98742 12222 223334433332 223566664 4678999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcch-h-hccCeEEEEeCCeEEEecChHHHHh
Q 000674 747 FSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF-L-SEVDRILVLEGGQITQSGNYQELLL 807 (1358)
Q Consensus 747 ~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~-l-~~~d~i~~l~~G~i~~~g~~~~l~~ 807 (1358)
|++||+.++.++.+.+.+...+|+|+|++||+++. + ..+|++++|++|++++.|+.+++.+
T Consensus 234 tsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 234 TSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred CCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 99999999999988766555579999999999984 4 4589999999999999999998863
No 362
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.98 E-value=6.2e-32 Score=335.51 Aligned_cols=196 Identities=22% Similarity=0.344 Sum_probs=160.8
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------~ 659 (1358)
.++++|+++. .+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| .
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 5788888732 489999999999999999999999999999999999999999999876 2
Q ss_pred EEEEeCCC----CCCCCCHHHHHhcCCCC---------CH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCCh
Q 000674 660 IAYVSQTS----WIQSGSIRDNILYGKPM---------DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1358)
Q Consensus 660 i~yv~Q~~----~~~~~tv~eni~~g~~~---------~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSG 722 (1358)
++|++|++ .+.+.|+.||+.++... +. ++.++.++.+++.. + ....+..+|||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~--~~~~~~~~LSg 399 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKT--------P--SREQLIMNLSG 399 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCccc--------C--CccCccccCCH
Confidence 79999997 34568999999875310 11 12223333333311 1 12356789999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecC
Q 000674 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1358)
Q Consensus 723 GQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1358)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+|.|+|+||||++++.. ||++++|++|++++.|+
T Consensus 400 Gq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~ 479 (501)
T PRK11288 400 GNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELA 479 (501)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999987665555568999999999999866 89999999999999998
Q ss_pred hHHHH
Q 000674 802 YQELL 806 (1358)
Q Consensus 802 ~~~l~ 806 (1358)
.+++.
T Consensus 480 ~~~~~ 484 (501)
T PRK11288 480 REQAT 484 (501)
T ss_pred cccCC
Confidence 87654
No 363
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=5.9e-32 Score=283.72 Aligned_cols=205 Identities=23% Similarity=0.390 Sum_probs=176.0
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------eEEEEe
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------SIAYVS 664 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g---------~i~yv~ 664 (1358)
.+++++++.+|+. ..+++|+||++++|++.+++|+||+||||.+++|+|+++|++|+|.++| +|||.|
T Consensus 2 ~L~ie~vtK~Fg~---k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLP 78 (300)
T COG4152 2 ALEIEGVTKSFGD---KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLP 78 (300)
T ss_pred ceEEecchhccCc---eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccCh
Confidence 4789999999974 4699999999999999999999999999999999999999999999998 699999
Q ss_pred CCCCC-CCCCHHHHHhcCC---CCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000674 665 QTSWI-QSGSIRDNILYGK---PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1358)
Q Consensus 665 Q~~~~-~~~tv~eni~~g~---~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~i 740 (1358)
.+--+ +..||.|-+.|-. .++.+..++-+ ...++++.-.+. -.++..+||.|.+|+|.+--|++++|++
T Consensus 79 EERGLy~k~tv~dql~yla~LkGm~~~e~~~~~-----~~wLer~~i~~~--~~~kIk~LSKGnqQKIQfisaviHePeL 151 (300)
T COG4152 79 EERGLYPKMTVEDQLKYLAELKGMPKAEIQKKL-----QAWLERLEIVGK--KTKKIKELSKGNQQKIQFISAVIHEPEL 151 (300)
T ss_pred hhhccCccCcHHHHHHHHHHhcCCcHHHHHHHH-----HHHHHhcccccc--ccchHHHhhhhhhHHHHHHHHHhcCCCE
Confidence 99765 6789999998732 23444333322 233444433322 1367889999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhc
Q 000674 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 741 llLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1358)
++||||||||||.+.+.+-+.++....+|+|||+.||+++.+.. ||+++.|++|+.+-+|+.+++.++
T Consensus 152 lILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~ 220 (300)
T COG4152 152 LILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRS 220 (300)
T ss_pred EEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHh
Confidence 99999999999999998888888888899999999999999987 999999999999999999998764
No 364
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.97 E-value=7.1e-32 Score=334.96 Aligned_cols=194 Identities=23% Similarity=0.405 Sum_probs=159.8
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------~ 659 (1358)
.++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 578888873 369999999999999999999999999999999999999999999876 2
Q ss_pred EEEEeCCC---C-CCCCCHHHHHhcCCC---------CCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCCh
Q 000674 660 IAYVSQTS---W-IQSGSIRDNILYGKP---------MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1358)
Q Consensus 660 i~yv~Q~~---~-~~~~tv~eni~~g~~---------~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSG 722 (1358)
+||++|++ . +++.|++||+.++.. .+. ++.++.++.+++.. + ...+++.+|||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~--~~~~~~~~LSg 398 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT--------P--SMEQAIGLLSG 398 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCC--------C--CccCchhhCCH
Confidence 89999997 2 356799999987521 111 12223333333310 1 13467789999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecC
Q 000674 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1358)
Q Consensus 723 GQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1358)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++|||++++.. ||++++|++|+++..|+
T Consensus 399 Gekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~ 478 (501)
T PRK10762 399 GNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFT 478 (501)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999988766655568999999999999876 89999999999999988
Q ss_pred hHHH
Q 000674 802 YQEL 805 (1358)
Q Consensus 802 ~~~l 805 (1358)
.+++
T Consensus 479 ~~~~ 482 (501)
T PRK10762 479 REQA 482 (501)
T ss_pred cccC
Confidence 7765
No 365
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.97 E-value=2e-31 Score=293.27 Aligned_cols=184 Identities=18% Similarity=0.227 Sum_probs=148.2
Q ss_pred cceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEE-EcCeEEEEeCCCCCC-CCCHHHHHhcCC---CCCH
Q 000674 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN-LYGSIAYVSQTSWIQ-SGSIRDNILYGK---PMDK 686 (1358)
Q Consensus 612 ~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~-~~g~i~yv~Q~~~~~-~~tv~eni~~g~---~~~~ 686 (1358)
+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|. ++|....+.|++.++ +.|++||+.+.. ..+.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~ 81 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDG 81 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCH
Confidence 68999999999999999999999999999999999999999997 777644455666665 469999998642 2333
Q ss_pred HHHHHHH-HHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhH
Q 000674 687 ARYDKAI-KACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765 (1358)
Q Consensus 687 ~~~~~~~-~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~ 765 (1358)
++..+.+ +..++.. . ...+...||||||||++||||++.+|+++|||||++++|+.+.+.+.+.+...
T Consensus 82 ~~~~~~~~~~~~l~~-------~----~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~ 150 (213)
T PRK15177 82 DEFSHFCYQLTQLEQ-------C----YTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQ 150 (213)
T ss_pred HHHHHHHHHHhChhH-------H----hhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHH
Confidence 3322222 2222221 1 12456789999999999999999999999999999999999999887755443
Q ss_pred hcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHh
Q 000674 766 ALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1358)
Q Consensus 766 ~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1358)
.+++|+|++||+++.+.. ||++++|++|++++.|+.++..+
T Consensus 151 -~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 192 (213)
T PRK15177 151 -LQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATA 192 (213)
T ss_pred -hhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHH
Confidence 356799999999999865 89999999999999999888753
No 366
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=1.5e-31 Score=290.85 Aligned_cols=189 Identities=25% Similarity=0.332 Sum_probs=160.0
Q ss_pred cEEEEeeEEEeCCCC------CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeE-EEEeCC
Q 000674 594 SVKIQEGNFSWDPEL------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSI-AYVSQT 666 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~------~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g~i-~yv~Q~ 666 (1358)
-++++|.+..|+... ...+++||||+|++||.++|||.|||||||+-++|+|+++|++|+|.++|+= .-..
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 467888888887532 1468999999999999999999999999999999999999999999998851 1111
Q ss_pred CCCCCCCHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCC
Q 000674 667 SWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1358)
Q Consensus 667 ~~~~~~tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep 746 (1358)
.....+++.+.++..++.++.. .+.+.+|||||||||+||||+.-+|+++++|||
T Consensus 82 ---------------~~~~~~~v~elL~~Vgl~~~~~----------~ryPhelSGGQrQRi~IARALal~P~liV~DEp 136 (268)
T COG4608 82 ---------------KEERRERVLELLEKVGLPEEFL----------YRYPHELSGGQRQRIGIARALALNPKLIVADEP 136 (268)
T ss_pred ---------------hhHHHHHHHHHHHHhCCCHHHh----------hcCCcccCchhhhhHHHHHHHhhCCcEEEecCc
Confidence 1122456778888888776543 366789999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhcC
Q 000674 747 FSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1358)
Q Consensus 747 ~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1358)
+|+||..++.+|.+.+..... .|-|.+++|||++.+.+ +|+|.||..|+|++.|+.+++..+.
T Consensus 137 vSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p 201 (268)
T COG4608 137 VSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNP 201 (268)
T ss_pred hhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCC
Confidence 999999999999876655433 48899999999999987 8999999999999999999998754
No 367
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.97 E-value=3.7e-31 Score=272.66 Aligned_cols=141 Identities=32% Similarity=0.507 Sum_probs=129.4
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCCCCCC
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSG 672 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--~i~yv~Q~~~~~~~ 672 (1358)
++++|+++.|+. .++++|+||++++||+++|+|+||||||||+++|.|+.+|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~------- 70 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ------- 70 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc-------
Confidence 468899999964 3699999999999999999999999999999999999999999999998 5899998
Q ss_pred CHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Q 000674 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752 (1358)
Q Consensus 673 tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~ 752 (1358)
||||||||++||||++++|++++||||+++||+
T Consensus 71 -----------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~ 103 (144)
T cd03221 71 -----------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDL 103 (144)
T ss_pred -----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCe
Q 000674 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1358)
Q Consensus 753 ~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1358)
.+.+.+.+.+.. . ++|+|++||+.+.+.. ||++++|++|+
T Consensus 104 ~~~~~l~~~l~~-~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 104 ESIEALEEALKE-Y--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHHHHHHH-c--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 999988775533 2 5799999999999876 89999999986
No 368
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=5.7e-31 Score=292.75 Aligned_cols=207 Identities=22% Similarity=0.378 Sum_probs=173.1
Q ss_pred CcEEEEeeEEEeCCCC--------CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------
Q 000674 593 RSVKIQEGNFSWDPEL--------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~--------~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------ 658 (1358)
..++.+|+...|+-+. ...+.+++||++++||.++|||.+|||||||-.+|++++++. |+|.+.|
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~ 353 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGL 353 (534)
T ss_pred ceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccccc
Confidence 4567778877776432 235789999999999999999999999999999999999887 9999887
Q ss_pred ----------eEEEEeCCCC---CCCCCHHHHHhcCCCC------CH---HHHHHHHHHhccHHHHhcCCCCCCccccCC
Q 000674 659 ----------SIAYVSQTSW---IQSGSIRDNILYGKPM------DK---ARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1358)
Q Consensus 659 ----------~i~yv~Q~~~---~~~~tv~eni~~g~~~------~~---~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~ 716 (1358)
++-.|+|+|+ -+.+||.+-|.-|... +. ++..++++..+|+++.. .+.
T Consensus 354 ~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r----------~RY 423 (534)
T COG4172 354 SRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATR----------NRY 423 (534)
T ss_pred ChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHh----------hcC
Confidence 3899999996 3678999998776421 22 34455666677766443 367
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHh-cCCcEEEEEcCCcchhhc-cCeEEEEeCC
Q 000674 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGG 794 (1358)
Q Consensus 717 g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G 794 (1358)
+.+.||||||||+||||++-+|++++|||||||||..+..++.+.+.... ..|-+-+++|||+..++. ||+|+||++|
T Consensus 424 PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~G 503 (534)
T COG4172 424 PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDG 503 (534)
T ss_pred CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCC
Confidence 88999999999999999999999999999999999999999988665543 347899999999999987 8999999999
Q ss_pred eEEEecChHHHHhcCc
Q 000674 795 QITQSGNYQELLLAGT 810 (1358)
Q Consensus 795 ~i~~~g~~~~l~~~~~ 810 (1358)
+|+|+|+.+++.++..
T Consensus 504 kiVE~G~~~~if~~P~ 519 (534)
T COG4172 504 KIVEQGPTEAVFANPQ 519 (534)
T ss_pred EEeeeCCHHHHhcCCC
Confidence 9999999999987654
No 369
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.97 E-value=2.2e-31 Score=311.05 Aligned_cols=171 Identities=30% Similarity=0.405 Sum_probs=143.9
Q ss_pred EECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEEeCCCCCC-CCCHHHHHhcCCC---CCH----HH
Q 000674 628 VCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYVSQTSWIQ-SGSIRDNILYGKP---MDK----AR 688 (1358)
Q Consensus 628 i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-----------~i~yv~Q~~~~~-~~tv~eni~~g~~---~~~----~~ 688 (1358)
|+||||||||||+++|+|+++|++|+|.++| +++|++|++.++ +.|++||+.|+.. .+. ++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 6899999999999999999999999999987 389999998876 5699999998642 221 23
Q ss_pred HHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-
Q 000674 689 YDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL- 767 (1358)
Q Consensus 689 ~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~- 767 (1358)
.+++++.+++...+ .++..+|||||||||+||||++++|+++||||||++||+.+.+.+.+.+.....
T Consensus 81 ~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~ 149 (325)
T TIGR01187 81 VLEALRLVQLEEFA-----------DRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149 (325)
T ss_pred HHHHHHHcCCcchh-----------cCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 44455555554322 256778999999999999999999999999999999999999999877665444
Q ss_pred CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhcC
Q 000674 768 EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1358)
Q Consensus 768 ~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1358)
.|+|+|+|||+++.+.. ||+|++|++|++.+.|+++++....
T Consensus 150 ~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~ 192 (325)
T TIGR01187 150 LGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEP 192 (325)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 38999999999998765 8999999999999999999997653
No 370
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=8.5e-31 Score=328.61 Aligned_cols=200 Identities=22% Similarity=0.342 Sum_probs=164.4
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCC-CC
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTS-WI 669 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--~i~yv~Q~~-~~ 669 (1358)
..++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.+.+ ++||++|++ .+
T Consensus 323 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~ 399 (556)
T PRK11819 323 KVIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDAL 399 (556)
T ss_pred eEEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhc
Confidence 46999999999964 4699999999999999999999999999999999999999999999965 599999996 44
Q ss_pred -CCCCHHHHHhcCCCC-----CHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEE
Q 000674 670 -QSGSIRDNILYGKPM-----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLF 743 (1358)
Q Consensus 670 -~~~tv~eni~~g~~~-----~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illL 743 (1358)
.+.|++||+.++... ++.+.+..++..++..+. ...+..+||||||||++||||++.+|+++||
T Consensus 400 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~la~al~~~p~lllL 469 (556)
T PRK11819 400 DPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGD----------QQKKVGVLSGGERNRLHLAKTLKQGGNVLLL 469 (556)
T ss_pred CCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhH----------hcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 457999999876321 122233344444443211 2356778999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeC-CeEE-EecChHHHHhc
Q 000674 744 DDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEG-GQIT-QSGNYQELLLA 808 (1358)
Q Consensus 744 Dep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~-G~i~-~~g~~~~l~~~ 808 (1358)
||||++||+.+.+.+.+.+... + .|+|+||||++++.. ||+|++|++ |++. ..|+++++.+.
T Consensus 470 DEPt~~LD~~~~~~l~~~l~~~--~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 470 DEPTNDLDVETLRALEEALLEF--P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred cCCCCCCCHHHHHHHHHHHHhC--C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 9999999999999988755432 3 499999999999876 899999986 7876 58999988654
No 371
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.97 E-value=1.7e-31 Score=331.83 Aligned_cols=195 Identities=19% Similarity=0.360 Sum_probs=158.7
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------~ 659 (1358)
.++++|++. .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 588888873 159999999999999999999999999999999999999999999876 3
Q ss_pred EEEEeCCC----CCCCCCHHHHHhcC----CCC--CH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHH
Q 000674 660 IAYVSQTS----WIQSGSIRDNILYG----KPM--DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1358)
Q Consensus 660 i~yv~Q~~----~~~~~tv~eni~~g----~~~--~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 725 (1358)
++|+||++ ...+.|+.||+... ... .. ++.++.++.+++.. .....+..+||||||
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~k 409 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKF----------NHAEQAARTLSGGNQ 409 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCC----------CCccCccccCCcHHH
Confidence 89999985 34457999998632 011 11 11223333333310 113466789999999
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHH
Q 000674 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1358)
Q Consensus 726 qRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1358)
||++||||++.+|++|||||||++||+.+.+.+.+.+.....+|+|+|++|||++++.. ||++++|++|+++..|+.++
T Consensus 410 qrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~ 489 (510)
T PRK15439 410 QKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAA 489 (510)
T ss_pred HHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999988766555568999999999999876 89999999999999998876
Q ss_pred HH
Q 000674 805 LL 806 (1358)
Q Consensus 805 l~ 806 (1358)
+.
T Consensus 490 ~~ 491 (510)
T PRK15439 490 IN 491 (510)
T ss_pred CC
Confidence 64
No 372
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=7.2e-31 Score=329.25 Aligned_cols=199 Identities=22% Similarity=0.347 Sum_probs=163.1
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCC-C
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSW-I 669 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--~i~yv~Q~~~-~ 669 (1358)
..++++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.+++ +|||++|++. +
T Consensus 321 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~ 397 (552)
T TIGR03719 321 KVIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDAL 397 (552)
T ss_pred eEEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCcccc
Confidence 46899999999963 4699999999999999999999999999999999999999999999865 5999999963 4
Q ss_pred -CCCCHHHHHhcCCCC---C--HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEE
Q 000674 670 -QSGSIRDNILYGKPM---D--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLF 743 (1358)
Q Consensus 670 -~~~tv~eni~~g~~~---~--~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illL 743 (1358)
.+.|++||+.++... . +.+.++.++.+++..+. ...+..+|||||||||+||||++.+|+++||
T Consensus 398 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGe~qrv~la~al~~~p~lllL 467 (552)
T TIGR03719 398 DPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSD----------QQKKVGQLSGGERNRVHLAKTLKSGGNVLLL 467 (552)
T ss_pred CCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhH----------hcCchhhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 467999999886421 1 22233444444443211 2356778999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeC-CeEE-EecChHHHHh
Q 000674 744 DDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEG-GQIT-QSGNYQELLL 807 (1358)
Q Consensus 744 Dep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~-G~i~-~~g~~~~l~~ 807 (1358)
||||++||+.+.+.+.+.+... . .|+|+||||++++.. ||+|++|++ |++. ..|+++++.+
T Consensus 468 DEPt~~LD~~~~~~l~~~l~~~--~-~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 468 DEPTNDLDVETLRALEEALLEF--A-GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred eCCCCCCCHHHHHHHHHHHHHC--C-CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 9999999999999988755432 3 499999999999876 899999987 5776 6788887754
No 373
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=7.4e-31 Score=332.55 Aligned_cols=199 Identities=20% Similarity=0.387 Sum_probs=164.8
Q ss_pred CCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCC--
Q 000674 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTS-- 667 (1358)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--~i~yv~Q~~-- 667 (1358)
+..++++|++++|+. .++|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+.+ ++||++|++
T Consensus 310 ~~~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~ 386 (638)
T PRK10636 310 NPLLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLE 386 (638)
T ss_pred CceEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchh
Confidence 446999999999963 4699999999999999999999999999999999999999999999864 699999975
Q ss_pred CC-CCCCHHHHHhc-CCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcC
Q 000674 668 WI-QSGSIRDNILY-GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1358)
Q Consensus 668 ~~-~~~tv~eni~~-g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDe 745 (1358)
.+ .+.|+.+++.. ......++..++++.+++..+. ...+..+|||||||||+||||++++|+++||||
T Consensus 387 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~----------~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDE 456 (638)
T PRK10636 387 FLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDK----------VTEETRRFSGGEKARLVLALIVWQRPNLLLLDE 456 (638)
T ss_pred hCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhH----------hcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 23 34588888742 2222334555666666654321 124677899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEE-EecChHHHH
Q 000674 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSGNYQELL 806 (1358)
Q Consensus 746 p~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~g~~~~l~ 806 (1358)
||++||+.+.+.+.+.+.. . . .|+|+||||++++.. ||+|++|++|+++ +.|+++++.
T Consensus 457 Pt~~LD~~~~~~l~~~L~~-~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 457 PTNHLDLDMRQALTEALID-F-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CCCCCCHHHHHHHHHHHHH-c-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 9999999999998775543 2 3 499999999999976 8999999999997 789999985
No 374
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.97 E-value=1.3e-30 Score=300.42 Aligned_cols=207 Identities=23% Similarity=0.358 Sum_probs=144.9
Q ss_pred CCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCCCCCC
Q 000674 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQS 671 (1358)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g~i~yv~Q~~~~~~ 671 (1358)
...|.++|.++++.. .+.++|..|++.+|+.++|+|+|||||||+|++|.|-..|..-++. +...+++.---.
T Consensus 73 s~dvk~~sls~s~~g---~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d----~y~ls~e~~ps~ 145 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHG---VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHID----FYLLSREIEPSE 145 (614)
T ss_pred cccceeeeeeeccCC---ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccc----hhhhcccCCCch
Confidence 356899999999874 5789999999999999999999999999999999998888654442 333444322111
Q ss_pred C-CHHHHHhcCCC------CCHHHHHHHHHHhc---cHH---------------HHh--cCCCC-CCccccCCCCCCChH
Q 000674 672 G-SIRDNILYGKP------MDKARYDKAIKACA---LDK---------------DIN--NFDHG-DLTEIGQRGLNLSGG 723 (1358)
Q Consensus 672 ~-tv~eni~~g~~------~~~~~~~~~~~~~~---l~~---------------dl~--~l~~g-d~t~ig~~g~~LSGG 723 (1358)
. +++.-+.+... +..|+|...++... +.. ... ....| ......++..+||||
T Consensus 146 ~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgG 225 (614)
T KOG0927|consen 146 KQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGG 225 (614)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCch
Confidence 2 23332222110 00111111111100 000 000 00111 112234667899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCc-EEEEEcCCcchhhc-cCeEEEEeCCe-EEEec
Q 000674 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQVEFLSE-VDRILVLEGGQ-ITQSG 800 (1358)
Q Consensus 724 QkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~-tvilvtH~~~~l~~-~d~i~~l~~G~-i~~~g 800 (1358)
||.|++|||||..+|++|||||||++||..+..++-+.+.. .++ ++++++|..++++. |.+|+-|++++ +.+.|
T Consensus 226 wrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k---~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~G 302 (614)
T KOG0927|consen 226 WRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAK---YDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEG 302 (614)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHh---ccCceEEEEecchhhhhhHhhhhheecccceeeecC
Confidence 99999999999999999999999999999999998654432 234 89999999999997 89999999999 67899
Q ss_pred ChHHHHhc
Q 000674 801 NYQELLLA 808 (1358)
Q Consensus 801 ~~~~l~~~ 808 (1358)
+|+++...
T Consensus 303 nydqy~~t 310 (614)
T KOG0927|consen 303 NYDQYVKT 310 (614)
T ss_pred CHHHHhhH
Confidence 99998643
No 375
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=1.2e-30 Score=331.55 Aligned_cols=200 Identities=24% Similarity=0.376 Sum_probs=163.2
Q ss_pred CCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCC--
Q 000674 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTS-- 667 (1358)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--~i~yv~Q~~-- 667 (1358)
+..++++|++++|+. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+.. +|||++|++
T Consensus 317 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~ 393 (635)
T PRK11147 317 KIVFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAE 393 (635)
T ss_pred CceEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccc
Confidence 346899999999963 4699999999999999999999999999999999999999999999843 599999985
Q ss_pred CCCCCCHHHHHhcCCC-C--C--HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEE
Q 000674 668 WIQSGSIRDNILYGKP-M--D--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742 (1358)
Q Consensus 668 ~~~~~tv~eni~~g~~-~--~--~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~ill 742 (1358)
...+.||.||+.++.. . + ..+..+.++.+++..+. ...+..+||||||||++||||++.+|++||
T Consensus 394 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGekqRl~la~al~~~p~lLl 463 (635)
T PRK11147 394 LDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKR----------AMTPVKALSGGERNRLLLARLFLKPSNLLI 463 (635)
T ss_pred cCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHH----------HhChhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 3356799999987532 1 1 22333444444443221 225667899999999999999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEe-CCeEE-EecChHHHHh
Q 000674 743 FDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLE-GGQIT-QSGNYQELLL 807 (1358)
Q Consensus 743 LDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~-~G~i~-~~g~~~~l~~ 807 (1358)
|||||++||+.+.+.+.+.+ ... +.|+|+||||++++.. ||++++++ +|++. +.|+|+++++
T Consensus 464 LDEPt~~LD~~~~~~l~~~l-~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 464 LDEPTNDLDVETLELLEELL-DSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred EcCCCCCCCHHHHHHHHHHH-HhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 99999999999988876543 322 4599999999999976 89999998 89987 5799999853
No 376
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=1.7e-30 Score=329.65 Aligned_cols=198 Identities=25% Similarity=0.409 Sum_probs=163.7
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCCCC
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQ 670 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--~i~yv~Q~~~~~ 670 (1358)
..++++|++++|+.+ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +|||++|++. .
T Consensus 507 ~~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~-~ 583 (718)
T PLN03073 507 PIISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHV-D 583 (718)
T ss_pred ceEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEecccc-c
Confidence 468999999999642 3589999999999999999999999999999999999999999999876 5999999873 3
Q ss_pred CCCHHHHHhc--C---CCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcC
Q 000674 671 SGSIRDNILY--G---KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1358)
Q Consensus 671 ~~tv~eni~~--g---~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDe 745 (1358)
..++.+|... . ....++++.++++.+++..+.. ..++.+||||||||++||||++++|+++||||
T Consensus 584 ~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~----------~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDE 653 (718)
T PLN03073 584 GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKKPHILLLDE 653 (718)
T ss_pred cCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHh----------cCCccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3455555432 1 1234566777777777754322 24577899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEE-EecChHHHH
Q 000674 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSGNYQELL 806 (1358)
Q Consensus 746 p~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~g~~~~l~ 806 (1358)
||++||+.+.+.+.+.+... + .|+|+||||++++.. ||++++|++|+++ ..|+++++.
T Consensus 654 PT~~LD~~s~~~l~~~L~~~--~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 654 PSNHLDLDAVEALIQGLVLF--Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred CCCCCCHHHHHHHHHHHHHc--C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 99999999999887654332 3 499999999999976 8999999999998 788888764
No 377
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=1e-30 Score=326.26 Aligned_cols=193 Identities=23% Similarity=0.315 Sum_probs=163.5
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCCCC-CC
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWI-QS 671 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g~i~yv~Q~~~~-~~ 671 (1358)
..++++|++++|+. ..|+++|+++++||+++|+||||||||||+++|+|+++|++|+|.++-+++|+||++.. ++
T Consensus 339 ~~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~ 414 (590)
T PRK13409 339 TLVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYD 414 (590)
T ss_pred eEEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCC
Confidence 45899999999963 25999999999999999999999999999999999999999999988789999999764 57
Q ss_pred CCHHHHHhcCCC-CC-HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCC
Q 000674 672 GSIRDNILYGKP-MD-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749 (1358)
Q Consensus 672 ~tv~eni~~g~~-~~-~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep~s~ 749 (1358)
.||+||+.++.. +. +....++++..++.+..+ ....+|||||||||+||||+.++|++|||||||++
T Consensus 415 ~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~-----------~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~ 483 (590)
T PRK13409 415 GTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLD-----------KNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAH 483 (590)
T ss_pred CcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHh-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 899999987532 22 234456677777754332 56778999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecC
Q 000674 750 VDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1358)
Q Consensus 750 lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1358)
||+.+...+.+.+..... .|+|+|+||||++++.. ||++++|++ ++...|+
T Consensus 484 LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 484 LDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 999999998876655444 48999999999999876 899999965 7777776
No 378
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.97 E-value=1.8e-30 Score=329.92 Aligned_cols=202 Identities=24% Similarity=0.381 Sum_probs=169.5
Q ss_pred cEEEEeeEEEeCCCC-CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000674 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------- 658 (1358)
.++++|+++.|+... ..++|+|+||++++||+++|+|+||||||||+++|+|+++|++|++.++|
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 488999999996422 24699999999999999999999999999999999999999999998876
Q ss_pred ---eEEEEeCCCCCC-CCCHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000674 659 ---SIAYVSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1358)
Q Consensus 659 ---~i~yv~Q~~~~~-~~tv~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 727 (1358)
.++|++|++.++ ..|+.||+.++.. .. +++..+.++.+++.+.+ ..++.+||||||||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~-----------~~~~~~LS~Gq~qr 152 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRV-----------EYQPSQLSGGQQQR 152 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------cCCcccCCHHHHHH
Confidence 379999999876 4699999986421 11 12334445555554332 35667899999999
Q ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEEEecChHHHH
Q 000674 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806 (1358)
Q Consensus 728 v~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 806 (1358)
++||||++++|++++|||||++||+.+.+.+.+.+.....+++|+|++||+.+.+..||++++|++|+++++|+.++..
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 9999999999999999999999999999998876654444689999999999988889999999999999999988764
No 379
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=1.1e-30 Score=276.55 Aligned_cols=153 Identities=25% Similarity=0.298 Sum_probs=132.8
Q ss_pred EeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-eEEEEeCCCCCCCCCHHH
Q 000674 598 QEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSWIQSGSIRD 676 (1358)
Q Consensus 598 ~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-~i~yv~Q~~~~~~~tv~e 676 (1358)
.|++++|+. .++++| ++++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.
T Consensus 4 ~~l~~~~~~---~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~-------- 71 (177)
T cd03222 4 PDCVKRYGV---FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYID-------- 71 (177)
T ss_pred CCeEEEECC---EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCC--------
Confidence 467888863 467888 499999999999999999999999999999999999999998 5899998652
Q ss_pred HHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Q 000674 677 NILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAA 756 (1358)
Q Consensus 677 ni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~ 756 (1358)
||||||||++||||++.+|++++|||||++||+.+.+
T Consensus 72 -------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~ 108 (177)
T cd03222 72 -------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRL 108 (177)
T ss_pred -------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhcCC-cEEEEEcCCcchhhc-cCeEEEEeCCeEEEe--cChHHH
Q 000674 757 TLFNECVMAALEK-KTVILVTHQVEFLSE-VDRILVLEGGQITQS--GNYQEL 805 (1358)
Q Consensus 757 ~i~~~~~~~~~~~-~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~--g~~~~l 805 (1358)
.+.+.+.....++ +|+|++||+++.+.. ||++++|+++..+++ |.+...
T Consensus 109 ~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 161 (177)
T cd03222 109 NAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGT 161 (177)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcch
Confidence 9887665544454 899999999999885 899999998866543 544433
No 380
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=3.1e-30 Score=274.78 Aligned_cols=188 Identities=27% Similarity=0.361 Sum_probs=164.2
Q ss_pred CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCC--CCCCCCHHHHHhc-----C
Q 000674 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTS--WIQSGSIRDNILY-----G 681 (1358)
Q Consensus 609 ~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g~i~yv~Q~~--~~~~~tv~eni~~-----g 681 (1358)
...+|+||||++.+||.++|+|+|||||||||++|.|.++|++|+|.++|+|++.-.-. .-++.|.||||.+ |
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G 118 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILG 118 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhC
Confidence 34689999999999999999999999999999999999999999999999999766543 3457799999975 2
Q ss_pred C--CCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH
Q 000674 682 K--PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLF 759 (1358)
Q Consensus 682 ~--~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~ 759 (1358)
. ..-+++++++++-..|.+.++ .+..+.|-|++.|+++|-|...+|||||+||.++.-|+.-.++=.
T Consensus 119 ~~~~ei~~~~~eIieFaELG~fi~-----------~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~ 187 (249)
T COG1134 119 LTRKEIDEKVDEIIEFAELGDFID-----------QPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL 187 (249)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhh-----------CchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHH
Confidence 2 223567888888888877665 567899999999999999999999999999999999999888766
Q ss_pred HHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHh
Q 000674 760 NECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1358)
Q Consensus 760 ~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1358)
+.+.....+++|+|+||||++.+++ ||+++.|++|+|...|++++..+
T Consensus 188 ~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 188 ERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred HHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 6655555778999999999999987 99999999999999999999874
No 381
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.97 E-value=1.3e-30 Score=323.34 Aligned_cols=194 Identities=24% Similarity=0.374 Sum_probs=157.1
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-CCcEEEEcC-------------
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-ISGTVNLYG------------- 658 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~-~~G~i~~~g------------- 658 (1358)
..++++|+++.|+. .++|+|+||++++||+++|+||||||||||+++|+|+.++ ++|+|.++|
T Consensus 259 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~ 335 (490)
T PRK10938 259 PRIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIK 335 (490)
T ss_pred ceEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHH
Confidence 46999999999963 3589999999999999999999999999999999998876 699998865
Q ss_pred -eEEEEeCCCCCC---CCCHHHHHhcCCC--------CC---HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChH
Q 000674 659 -SIAYVSQTSWIQ---SGSIRDNILYGKP--------MD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1358)
Q Consensus 659 -~i~yv~Q~~~~~---~~tv~eni~~g~~--------~~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 723 (1358)
+++|++|++.++ ..++++++.++.. .. +++.++.++.+++..+. ...++.+||||
T Consensus 336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG 405 (490)
T PRK10938 336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRT----------ADAPFHSLSWG 405 (490)
T ss_pred hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhh----------ccCchhhCCHH
Confidence 289999997542 2477777764310 11 12445556666554311 12566789999
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCC-cEEEEEcCCcchhhc--cCeEEEEeCCeEEEe
Q 000674 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-KTVILVTHQVEFLSE--VDRILVLEGGQITQS 799 (1358)
Q Consensus 724 QkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~-~tvilvtH~~~~l~~--~d~i~~l~~G~i~~~ 799 (1358)
||||++||||++.+|+++||||||++||+.+.+.+.+.+.....++ .|+|++|||++++.. ||++++|++|++++.
T Consensus 406 q~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 406 QQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 9999999999999999999999999999999999987766554455 469999999999874 699999999998764
No 382
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.8e-30 Score=321.84 Aligned_cols=201 Identities=21% Similarity=0.334 Sum_probs=157.6
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe-------------
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g~------------- 659 (1358)
..|+++|+++.+ .++|+|+||++++||+++|+||||||||||+++|.|+.+|++|+|.++|.
T Consensus 249 ~~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 323 (491)
T PRK10982 249 VILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH 323 (491)
T ss_pred cEEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHC
Confidence 368999999863 25899999999999999999999999999999999999999999999861
Q ss_pred -EEEEeCCCC----CCCCCHHHHHhcC-----CC----CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHH
Q 000674 660 -IAYVSQTSW----IQSGSIRDNILYG-----KP----MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1358)
Q Consensus 660 -i~yv~Q~~~----~~~~tv~eni~~g-----~~----~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 725 (1358)
++|++|++. +.+.|+.+|+.+. .. .+....++ .....++.+..++. ....+..+||||||
T Consensus 324 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~-~~~~~~~~LSgGq~ 397 (491)
T PRK10982 324 GFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS-----DTQWVIDSMRVKTP-GHRTQIGSLSGGNQ 397 (491)
T ss_pred CCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH-----HHHHHHHhcCccCC-CcccccccCCcHHH
Confidence 899999852 3456777774321 11 11111111 11122333322211 13467889999999
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHH
Q 000674 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1358)
Q Consensus 726 qRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1358)
||++||||+..+|+++||||||++||+.+.+.+++.+.....+|+|+|++|||++++.. ||++++|++|+++..++.++
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~ 477 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKT 477 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999988665555578999999999999875 89999999999998776543
No 383
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=2.3e-30 Score=291.61 Aligned_cols=186 Identities=23% Similarity=0.290 Sum_probs=148.8
Q ss_pred eeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEE-----------EcC---------
Q 000674 599 EGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN-----------LYG--------- 658 (1358)
Q Consensus 599 ~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~-----------~~g--------- 658 (1358)
|++++|+.. .++|+|+| .+++||+++|+||||||||||+++|+|+++|++|+|. ++|
T Consensus 5 ~~~~~y~~~--~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 5 EPVHRYGPN--SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred CcceeecCc--chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence 578888642 35899999 5999999999999999999999999999999999995 434
Q ss_pred ------eEEEEeCCCCCCCCCHHHHHhcCCC--CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000674 659 ------SIAYVSQTSWIQSGSIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1358)
Q Consensus 659 ------~i~yv~Q~~~~~~~tv~eni~~g~~--~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 730 (1358)
.++|++|++..+..++.+|+.+... ..+++..++++.+++... ...++.+||||||||++|
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv~l 150 (255)
T cd03236 82 LLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHV-----------LDRNIDQLSGGELQRVAI 150 (255)
T ss_pred hhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHH
Confidence 2688899877666677777765321 123455566666655432 235678999999999999
Q ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEe
Q 000674 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQS 799 (1358)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~ 799 (1358)
|||++.+|++++|||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||+|++|+ |++.+.
T Consensus 151 aral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~ 219 (255)
T cd03236 151 AAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAY 219 (255)
T ss_pred HHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcc
Confidence 999999999999999999999999998877665544468999999999999885 89999995 556543
No 384
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.97 E-value=4.6e-30 Score=347.80 Aligned_cols=204 Identities=22% Similarity=0.332 Sum_probs=170.9
Q ss_pred cEEEEeeEEEeCCC-CCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc---CCCcEEEEcC---------eE
Q 000674 594 SVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---KISGTVNLYG---------SI 660 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~-~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~---~~~G~i~~~g---------~i 660 (1358)
.++++|++++++.+ ..+++|+|+|+++++||+++|+|||||||||||++|+|..+ +++|+|.++| .+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i 838 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSI 838 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcce
Confidence 47899999999632 23579999999999999999999999999999999999997 6889999988 38
Q ss_pred EEEeCCCC-CCCCCHHHHHhcCC------CCCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000674 661 AYVSQTSW-IQSGSIRDNILYGK------PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1358)
Q Consensus 661 ~yv~Q~~~-~~~~tv~eni~~g~------~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 729 (1358)
|||+|++. +++.||+||+.|+. ..++ ++.+++++..++.+. .++.+|+.+.+||||||||++
T Consensus 839 ~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~-------~d~~v~~~~~~LSgGqrqRl~ 911 (1394)
T TIGR00956 839 GYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESY-------ADAVVGVPGEGLNVEQRKRLT 911 (1394)
T ss_pred eeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh-------CCCeeCCCCCCCCHHHhhHHH
Confidence 99999865 56789999999752 1222 233455665555432 356788888899999999999
Q ss_pred HHHHHhcCCC-EEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchh--hccCeEEEEeCC-eEEEecChHH
Q 000674 730 LARAVYNDAD-IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFL--SEVDRILVLEGG-QITQSGNYQE 804 (1358)
Q Consensus 730 LARal~~~~~-illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l--~~~d~i~~l~~G-~i~~~g~~~~ 804 (1358)
||||+..+|+ +++|||||||||+.++..+.+.+.+...+|+|+|+++|+++.. ..+|++++|++| ++++.|+.++
T Consensus 912 Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 912 IGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred HHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 9999999997 9999999999999999999887766656799999999999863 568999999997 9999998743
No 385
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=5.8e-30 Score=270.92 Aligned_cols=151 Identities=26% Similarity=0.417 Sum_probs=123.8
Q ss_pred CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe--------EEEEeCCCCCCCCCHHHHHhc
Q 000674 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------IAYVSQTSWIQSGSIRDNILY 680 (1358)
Q Consensus 609 ~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g~--------i~yv~Q~~~~~~~tv~eni~~ 680 (1358)
.+++|+|+||++++|++++|+|||||||||||+++++ ++|++.+.|. ++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~~~~~~~~~~q--------------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKFSRNKLIFIDQ--------------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcccccccccEEEEhH---------------
Confidence 4578999999999999999999999999999999974 6899887764 344443
Q ss_pred CCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcC--CCEEEEcCCCCCCCHHHHHHH
Q 000674 681 GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND--ADIYLFDDPFSAVDAHTAATL 758 (1358)
Q Consensus 681 g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~--~~illLDep~s~lD~~~~~~i 758 (1358)
.+.++..++. +. ..++++.+||||||||++||||++++ |+++||||||++||+...+.+
T Consensus 68 ---------~~~l~~~~L~---------~~-~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l 128 (176)
T cd03238 68 ---------LQFLIDVGLG---------YL-TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQL 128 (176)
T ss_pred ---------HHHHHHcCCC---------cc-ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHH
Confidence 2233333332 11 13467889999999999999999999 999999999999999999998
Q ss_pred HHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeCCeEE
Q 000674 759 FNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQIT 797 (1358)
Q Consensus 759 ~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~ 797 (1358)
.+.+.....+|+|+|++||+++++..||++++|++|+..
T Consensus 129 ~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~~ 167 (176)
T cd03238 129 LEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSGK 167 (176)
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCCC
Confidence 876655444689999999999998889999999776543
No 386
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=6.1e-30 Score=264.09 Aligned_cols=189 Identities=28% Similarity=0.389 Sum_probs=155.1
Q ss_pred CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEEEeCCCC---CCCC
Q 000674 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSW---IQSG 672 (1358)
Q Consensus 609 ~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~i~yv~Q~~~---~~~~ 672 (1358)
++++|+++|++|++|+++.|+|.||+|||||+++|.|.+.|++|+|.++| .++-|+|+|- ..+.
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 46799999999999999999999999999999999999999999999988 2788999985 4678
Q ss_pred CHHHHHhcCC------CCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCC
Q 000674 673 SIRDNILYGK------PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1358)
Q Consensus 673 tv~eni~~g~------~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep 746 (1358)
||.||+.... .+....-.+ .......-+..++.|-....+.+..-|||||||-++|+.|..+.|+|++|||=
T Consensus 98 TieENl~la~~Rg~~rgl~~~ln~~--~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEH 175 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSALNER--RRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEH 175 (263)
T ss_pred cHHHHHHHHHhcCcccccchhhhHH--HHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecch
Confidence 9999997631 121110000 01112234667777777777788889999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchh-hccCeEEEEeCCeEEEe
Q 000674 747 FSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEVDRILVLEGGQITQS 799 (1358)
Q Consensus 747 ~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~ 799 (1358)
|+||||++++.+++.-.+... .+-|.+||||+++.. +.-+|.++|++|+|+.+
T Consensus 176 TAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 176 TAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred hhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEE
Confidence 999999999999876555443 356999999999875 55799999999999964
No 387
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.96 E-value=4.6e-30 Score=272.80 Aligned_cols=197 Identities=23% Similarity=0.389 Sum_probs=161.7
Q ss_pred CCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------
Q 000674 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1358)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------------ 658 (1358)
.+.-|+++|+++.|.. +++|+|||++|++||..+|+|||||||||||+.+.|+.+|++|.+.+.|
T Consensus 28 ~~~li~l~~v~v~r~g---k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~el 104 (257)
T COG1119 28 NEPLIELKNVSVRRNG---KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFEL 104 (257)
T ss_pred CcceEEecceEEEECC---EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHH
Confidence 3456999999999974 5799999999999999999999999999999999999999999998765
Q ss_pred --eEEEEeCC---CCCCCCCHHHHHhcC---------CCCCHHHHHH---HHHHhccHHHHhcCCCCCCccccCCCCCCC
Q 000674 659 --SIAYVSQT---SWIQSGSIRDNILYG---------KPMDKARYDK---AIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1358)
Q Consensus 659 --~i~yv~Q~---~~~~~~tv~eni~~g---------~~~~~~~~~~---~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 721 (1358)
+||||+-+ -...+.+++|-|+-| .+++++.+++ .++.+++.. ..++.-.+||
T Consensus 105 rk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~-----------la~r~~~~LS 173 (257)
T COG1119 105 RKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH-----------LADRPFGSLS 173 (257)
T ss_pred HHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhh-----------hccCchhhcC
Confidence 48999853 233467889888743 1345544443 344444433 2235678899
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcC--CcEEEEEcCCcchhhcc-CeEEEEeCCeEEE
Q 000674 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLSEV-DRILVLEGGQITQ 798 (1358)
Q Consensus 722 GGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~--~~tvilvtH~~~~l~~~-d~i~~l~~G~i~~ 798 (1358)
-||||||-||||++.+|.++|||||+++||....+.+.+.+...... +.|+|+|||+.+.++.| ++++.+++|+++.
T Consensus 174 ~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~ 253 (257)
T COG1119 174 QGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred HhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceee
Confidence 99999999999999999999999999999999998887776655443 78999999999999885 9999999999998
Q ss_pred ecC
Q 000674 799 SGN 801 (1358)
Q Consensus 799 ~g~ 801 (1358)
+|.
T Consensus 254 ~g~ 256 (257)
T COG1119 254 QGK 256 (257)
T ss_pred ccc
Confidence 874
No 388
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.5e-28 Score=257.93 Aligned_cols=142 Identities=39% Similarity=0.599 Sum_probs=126.7
Q ss_pred EEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe-------------EEEE
Q 000674 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-------------IAYV 663 (1358)
Q Consensus 597 ~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g~-------------i~yv 663 (1358)
++|++|.|+. .++++++|+++++|++++|+|+||||||||+++|.|+++|.+|+|.++|. ++|+
T Consensus 2 ~~~~~~~~~~---~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~ 78 (157)
T cd00267 2 IENLSFRYGG---RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYV 78 (157)
T ss_pred eEEEEEEeCC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEE
Confidence 6789999964 36999999999999999999999999999999999999999999999873 3444
Q ss_pred eCCCCCCCCCHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEE
Q 000674 664 SQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLF 743 (1358)
Q Consensus 664 ~Q~~~~~~~tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illL 743 (1358)
+| ||||||||++||||++.+|++++|
T Consensus 79 ~q------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 79 PQ------------------------------------------------------LSGGQRQRVALARALLLNPDLLLL 104 (157)
T ss_pred ee------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 43 999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCe
Q 000674 744 DDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1358)
Q Consensus 744 Dep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1358)
||||++||+.+...+.+.+.....+++|++++||+++++.. ||++++|++|+
T Consensus 105 DEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 105 DEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 99999999999998877665444446899999999999988 69999999875
No 389
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=5.6e-29 Score=249.30 Aligned_cols=188 Identities=23% Similarity=0.353 Sum_probs=154.6
Q ss_pred CccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEEEeCCCCC-CCCCHH
Q 000674 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWI-QSGSIR 675 (1358)
Q Consensus 610 ~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~i~yv~Q~~~~-~~~tv~ 675 (1358)
..+.+.+||++++|+..+|+|.||||||||.++|.|.++|++|+|.++| .|-.++|+|.- +|. |
T Consensus 26 ~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NP--R 103 (267)
T COG4167 26 VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNP--R 103 (267)
T ss_pred hhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccCh--h
Confidence 3478999999999999999999999999999999999999999999987 38899999852 332 2
Q ss_pred HHH----hcC----CCCCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEE
Q 000674 676 DNI----LYG----KPMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLF 743 (1358)
Q Consensus 676 eni----~~g----~~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illL 743 (1358)
-|| -++ -.+++ ++..+.++..+|-+|-.. -++..||-||||||+|||||+-+|+|++.
T Consensus 104 l~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan----------~~~~~la~~QKQRVaLARALIL~P~iIIa 173 (267)
T COG4167 104 LRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHAN----------YYPHMLAPGQKQRVALARALILRPKIIIA 173 (267)
T ss_pred hhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccc----------cchhhcCchhHHHHHHHHHHhcCCcEEEe
Confidence 222 121 12332 344445666666655433 35678999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhcC
Q 000674 744 DDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1358)
Q Consensus 744 Dep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1358)
||.+++||.....++.+..+.... .|-+-|.|+.++..+++ +|+|+||++|+++|.|+..++...+
T Consensus 174 DeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P 241 (267)
T COG4167 174 DEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASP 241 (267)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCC
Confidence 999999999999999876555433 48899999999999998 7999999999999999999998764
No 390
>PLN03140 ABC transporter G family member; Provisional
Probab=99.96 E-value=2e-28 Score=330.14 Aligned_cols=204 Identities=24% Similarity=0.371 Sum_probs=167.1
Q ss_pred cEEEEeeEEEeCCC----------CCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEEcC---
Q 000674 594 SVKIQEGNFSWDPE----------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--KISGTVNLYG--- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~----------~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~--~~~G~i~~~g--- 658 (1358)
.+.++|+++..+.. ....+|+|+|+++++|++++|+|||||||||||++|+|..+ +.+|+|.++|
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 58899999887531 12469999999999999999999999999999999999976 3789999987
Q ss_pred -------eEEEEeCCCCC-CCCCHHHHHhcCC------CCCH----HHHHHHHHHhccHHHHhcCCCCCCccccCCC-CC
Q 000674 659 -------SIAYVSQTSWI-QSGSIRDNILYGK------PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRG-LN 719 (1358)
Q Consensus 659 -------~i~yv~Q~~~~-~~~tv~eni~~g~------~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g-~~ 719 (1358)
.+|||+|++.+ ++.||+||+.|+. ..+. ++.+++++..+|.+.. ++.+|..+ ..
T Consensus 947 ~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~-------~~~vg~~~~~~ 1019 (1470)
T PLN03140 947 KQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLK-------DAIVGLPGVTG 1019 (1470)
T ss_pred ChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHh-------CCccCCCCCCC
Confidence 27999999754 5679999998742 1222 2345666666665432 34455443 57
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcch-h-hccCeEEEEeC-CeE
Q 000674 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF-L-SEVDRILVLEG-GQI 796 (1358)
Q Consensus 720 LSGGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~-l-~~~d~i~~l~~-G~i 796 (1358)
||||||||++|||||+.+|++++|||||||||+.++..+.+.+.+...+|+|+|++||+++. + ..+|++++|++ |++
T Consensus 1020 LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~ 1099 (1470)
T PLN03140 1020 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1099 (1470)
T ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEE
Confidence 99999999999999999999999999999999999999988776666678999999999984 3 56899999996 899
Q ss_pred EEecChHH
Q 000674 797 TQSGNYQE 804 (1358)
Q Consensus 797 ~~~g~~~~ 804 (1358)
++.|+..+
T Consensus 1100 v~~G~~~~ 1107 (1470)
T PLN03140 1100 IYSGPLGR 1107 (1470)
T ss_pred EEECCccc
Confidence 99998653
No 391
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=1.2e-28 Score=239.54 Aligned_cols=183 Identities=23% Similarity=0.360 Sum_probs=149.0
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEEcC-----------eE
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYG-----------SI 660 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~---~G~i~~~g-----------~i 660 (1358)
..++|++..-+. .-.|.|+|++|.+||++-+.||+|||||||++-+.|.+.+. +|++.+++ ++
T Consensus 3 l~l~nvsl~l~g---~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~ 79 (213)
T COG4136 3 LCLKNVSLRLPG---SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQI 79 (213)
T ss_pred eeeeeeeecCCC---ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhhe
Confidence 467788866553 45899999999999999999999999999999999999874 79998876 49
Q ss_pred EEEeCCCCCCC-CCHHHHHhcCCCCC------HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHH
Q 000674 661 AYVSQTSWIQS-GSIRDNILYGKPMD------KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1358)
Q Consensus 661 ~yv~Q~~~~~~-~tv~eni~~g~~~~------~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARa 733 (1358)
|..+|++|+|. .+|-+|++|..+-+ ....+.+++..+|...+.+ .+.+||||||.||+|-|+
T Consensus 80 GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~-----------dP~tlSGGQrARvaL~R~ 148 (213)
T COG4136 80 GILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQ-----------DPATLSGGQRARVALLRA 148 (213)
T ss_pred eeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhc-----------ChhhcCcchHHHHHHHHH
Confidence 99999999875 69999999986532 1223345666677666554 455899999999999999
Q ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHh-cCCcEEEEEcCCcchhhccCeEEEE
Q 000674 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRILVL 791 (1358)
Q Consensus 734 l~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l 791 (1358)
+.+.|+.++||||||.||..-..+..+-++... ..|-.+|+||||.+..+.-.||+-|
T Consensus 149 Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 149 LLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 999999999999999999988877666666543 3578899999999988854565544
No 392
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.96 E-value=6e-29 Score=282.79 Aligned_cols=142 Identities=41% Similarity=0.671 Sum_probs=135.3
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcC
Q 000674 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1358)
Q Consensus 1214 G~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~I 1293 (1358)
|+|+|+|++++|+++.+++|+|+||+|++||++|||||||||||||+++|+|+++ .+|+|.|||+|+.+++.+++|++|
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 6799999999997666679999999999999999999999999999999999998 789999999999999999999999
Q ss_pred ceecccccccccchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCccccccccCCcCCCCCC
Q 000674 1294 SIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSEQITYDYGWSSS 1357 (1358)
Q Consensus 1294 siVpQdp~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~Gldt~v~e~g~~n~s~~ 1357 (1358)
++|||+|.+|++|+++|++|++..+++++|++++.+++++++..+|+|||+.++|+|. |+|..
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~-~LS~G 142 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGC-VLSHG 142 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCC-CCCHH
Confidence 9999999999999999999988789999999999999999999999999999999988 98853
No 393
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.3e-25 Score=249.05 Aligned_cols=375 Identities=19% Similarity=0.223 Sum_probs=257.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccChhhHHHHHhcCHHHHHhhcHHHHHHHHHHH
Q 000674 941 YAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASG 1020 (1358)
Q Consensus 941 y~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~D~~~id~~l~~~l~~~~~~~ 1020 (1358)
++++..+..+...+........|.+...+++.++.++++.+|+.-+++-..||++.++++|+..|... -..+..+.+..
T Consensus 54 f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~-~s~lp~~~qa~ 132 (546)
T COG4615 54 FLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFA-FSRLPELVQAI 132 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeeh-HhhhHHHHHHH
Confidence 33333444444555666777889999999999999999999999999999999999999999999833 23445577777
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHH
Q 000674 1021 TELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNY 1100 (1358)
Q Consensus 1021 ~~~l~~i~v~~~~~~~l~~~~l~~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~G~~tIRAf~~e~~f~~~~ 1100 (1358)
+..+++++.+++.+|++..+.+..+++..+.+.+..+..-+-.+...++...+.++++-.++|.+..+......+.....
T Consensus 133 il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~ 212 (546)
T COG4615 133 ILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNN 212 (546)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhh
Confidence 78889999999999998877766665555544333333333333334555678899999999999988766433332221
Q ss_pred H--H----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 000674 1101 L--K----LVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLI-PRGYVAPGLVGLSLSYAFTLTGTQVFLSRW 1173 (1358)
Q Consensus 1101 ~--~----~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~l~-~~g~is~g~~gl~l~ya~~l~~~l~~l~~~ 1173 (1358)
. . .-+..............|-.+.+-.+..+ ..++. ..+--+...+.......+.+-+|+..++..
T Consensus 213 ~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGl-------vf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgi 285 (546)
T COG4615 213 LYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGL-------VFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGI 285 (546)
T ss_pred hcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhh
Confidence 1 1 11111111111223344544332111111 11111 111111111111222234456889999999
Q ss_pred HHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCC
Q 000674 1174 YCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTG 1253 (1358)
Q Consensus 1174 ~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTG 1253 (1358)
...+-++.++.+||.++..-|..+. -....+-++| -.||++||.|+|.++. --+.-||++|+.||.|=|+|.+|
T Consensus 286 lP~l~~AqvA~~kiakle~~~~~a~--~~~~q~~p~~---~~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~NG 359 (546)
T COG4615 286 LPTLLTAQVAFNKIAKLELAPYKAD--FPRPQAFPDW---KTLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNG 359 (546)
T ss_pred hhHHHHHHHHHHHHHHhhcCCcccc--CCCCCcCCcc---cceeeeeeeeccCccc-ceecceeeEEecCcEEEEECCCC
Confidence 9999999999999998765222111 1111222335 4699999999997754 35788999999999999999999
Q ss_pred ccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCceecccccccccchhhhcCCCCCCCHHHHHHHHHHcCCch
Q 000674 1254 SGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKT 1333 (1358)
Q Consensus 1254 SGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~IsiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~ 1333 (1358)
|||||++++|.|+|.|++|+|++||.+++.=++++.|+-++-|.-|-+||+.++ .|.+..+.+.|..-|++-.+..
T Consensus 360 sGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll----~~e~~as~q~i~~~LqrLel~~ 435 (546)
T COG4615 360 SGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL----GPEGKASPQLIEKWLQRLELAH 435 (546)
T ss_pred CcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh----CCccCCChHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999998875 3444467777766666555443
No 394
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=1.9e-27 Score=289.02 Aligned_cols=202 Identities=25% Similarity=0.412 Sum_probs=170.9
Q ss_pred CCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCC-
Q 000674 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTS- 667 (1358)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--~i~yv~Q~~- 667 (1358)
....++++|++++|+.+ +++++++||.|.+|+.++|+||||+||||||+.|+|...|.+|+|.+.. ++||.+|+.
T Consensus 318 g~~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~ 395 (530)
T COG0488 318 GKLVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRD 395 (530)
T ss_pred CCeeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhh
Confidence 45678999999999754 5799999999999999999999999999999999999999999998865 599999985
Q ss_pred -CCCCCCHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcC
Q 000674 668 -WIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1358)
Q Consensus 668 -~~~~~tv~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDe 745 (1358)
+..+.|+.|++.-..+ ..+...+..+..+++..+-. ..+...||||||.|+.||+.+.++|.+|||||
T Consensus 396 ~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~----------~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDE 465 (530)
T COG0488 396 ELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQ----------EKPVGVLSGGEKARLLLAKLLLQPPNLLLLDE 465 (530)
T ss_pred hcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHH----------hCchhhcCHhHHHHHHHHHHhccCCCEEEEcC
Confidence 3456699999987653 33677777888887766543 25677899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEE-ecChHHHHhc
Q 000674 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQ-SGNYQELLLA 808 (1358)
Q Consensus 746 p~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~-~g~~~~l~~~ 808 (1358)
||++||..+...+-+.+. . . .-|+|+||||.+|++. |++++.+++ ++.. .|+|+++.+.
T Consensus 466 PTNhLDi~s~~aLe~aL~-~-f-~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 466 PTNHLDIESLEALEEALL-D-F-EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred CCccCCHHHHHHHHHHHH-h-C-CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 999999999887754332 1 2 3499999999999998 799999999 6665 4999988654
No 395
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=7.8e-28 Score=244.55 Aligned_cols=201 Identities=21% Similarity=0.339 Sum_probs=165.6
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------- 658 (1358)
..++++|++.+++. -.+|+|+||++.+||+-+|+||||+||||++..|.|-.+|+.|++.++|
T Consensus 4 ~iL~~~~vsVsF~G---F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr 80 (249)
T COG4674 4 IILYLDGVSVSFGG---FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80 (249)
T ss_pred ceEEEeceEEEEcc---eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHH
Confidence 35788899999974 4689999999999999999999999999999999999999999999988
Q ss_pred -eEEEEeCCCCCC-CCCHHHHHhcCCC---------------CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCC
Q 000674 659 -SIAYVSQTSWIQ-SGSIRDNILYGKP---------------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1358)
Q Consensus 659 -~i~yv~Q~~~~~-~~tv~eni~~g~~---------------~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 721 (1358)
.||-=+|.|-.| +.||+||+..... .++++.++++...+|.+.- .....+||
T Consensus 81 ~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~-----------~~~A~~LS 149 (249)
T COG4674 81 AGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDER-----------DRLAALLS 149 (249)
T ss_pred hccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhh-----------hhhhhhhc
Confidence 278889999876 6699999854321 1233556666655554322 24467899
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEec
Q 000674 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1358)
Q Consensus 722 GGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1358)
-||||++.|+.-+.++|++++||||.+++-.......- ++++...+++++++|.||++|+.. ||+|-||+.|.+..+|
T Consensus 150 HGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~ta-eLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EG 228 (249)
T COG4674 150 HGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTA-ELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEG 228 (249)
T ss_pred cchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHH-HHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecc
Confidence 99999999999999999999999999999444444433 455566678899999999999987 8999999999999999
Q ss_pred ChHHHHhc
Q 000674 801 NYQELLLA 808 (1358)
Q Consensus 801 ~~~~l~~~ 808 (1358)
+.+++.++
T Consensus 229 sld~v~~d 236 (249)
T COG4674 229 SLDEVQND 236 (249)
T ss_pred cHHHhhcC
Confidence 99998654
No 396
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=9.6e-28 Score=256.17 Aligned_cols=188 Identities=23% Similarity=0.336 Sum_probs=146.6
Q ss_pred CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe------------EEEEeC---CCCCCCCC
Q 000674 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------IAYVSQ---TSWIQSGS 673 (1358)
Q Consensus 609 ~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g~------------i~yv~Q---~~~~~~~t 673 (1358)
..++.+||||+|++|++++.+|+||+||||+||+|.|.+.|++|.|.+.|. +++|.- +-|-...
T Consensus 36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp- 114 (325)
T COG4586 36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP- 114 (325)
T ss_pred hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech-
Confidence 346899999999999999999999999999999999999999999999983 444431 2222111
Q ss_pred HHHHHhcC---CCCCHHHHHH----HHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCC
Q 000674 674 IRDNILYG---KPMDKARYDK----AIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1358)
Q Consensus 674 v~eni~~g---~~~~~~~~~~----~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep 746 (1358)
+.|-+..- .+...++|++ ..+..+++..+ ..+...||-|||.|+.||.||.++|+|++||||
T Consensus 115 ~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~l-----------k~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEp 183 (325)
T COG4586 115 ALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFL-----------KWPVRKLSLGQRMRAELAAALLHPPKVLFLDEP 183 (325)
T ss_pred hhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhh-----------hhhhhhccchHHHHHHHHHHhcCCCcEEEecCC
Confidence 22222111 1223334433 33333443333 356789999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhHh-cCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhc
Q 000674 747 FSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 747 ~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1358)
|-+||..++..|.+.+.... .++.||+++||+++-+.. ||||+.|+.|++++.|+.+++.++
T Consensus 184 TvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~ 247 (325)
T COG4586 184 TVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ 247 (325)
T ss_pred ccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHH
Confidence 99999999999877665433 468899999999998876 999999999999999999998754
No 397
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=5.5e-27 Score=269.25 Aligned_cols=193 Identities=27% Similarity=0.407 Sum_probs=140.0
Q ss_pred CCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEc-------CeEEEEe
Q 000674 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY-------GSIAYVS 664 (1358)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~-------g~i~yv~ 664 (1358)
..+|.+.|.+.+|.. +..|.+-++++..|-.+++||+||+||||||++|.. |.|..- |.--..-
T Consensus 78 ~~Di~~~~fdLa~G~---k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~ 148 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGG---KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEAL 148 (582)
T ss_pred ccceeeeeeeeeecc---hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHH
Confidence 356888888888873 568999999999999999999999999999999986 333211 1101111
Q ss_pred CCCCCCCCC-HHHHHhcCCCC----C-HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000674 665 QTSWIQSGS-IRDNILYGKPM----D-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1358)
Q Consensus 665 Q~~~~~~~t-v~eni~~g~~~----~-~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~ 738 (1358)
|+- +...+ +.+-+.-.... . ++-|.+++...+..+++...| ..+||||-|.|++|||||..+|
T Consensus 149 ~~~-l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~p----------t~slSGGWrMrlaLARAlf~~p 217 (582)
T KOG0062|consen 149 QSV-LESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQP----------TKSLSGGWRMRLALARALFAKP 217 (582)
T ss_pred hhh-hhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhcc----------ccccCcchhhHHHHHHHHhcCC
Confidence 111 11222 23322222111 1 234555677777777777644 4579999999999999999999
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEE-EecChHHHHh
Q 000674 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSGNYQELLL 807 (1358)
Q Consensus 739 ~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~g~~~~l~~ 807 (1358)
|+|||||||+.||.+...++-+.+.. .+.|+|+||||..||.. |..|+-+++-++- +.|+|+++.+
T Consensus 218 DlLLLDEPTNhLDv~av~WLe~yL~t---~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk 285 (582)
T KOG0062|consen 218 DLLLLDEPTNHLDVVAVAWLENYLQT---WKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVK 285 (582)
T ss_pred CEEeecCCcccchhHHHHHHHHHHhh---CCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHH
Confidence 99999999999999999998654422 24799999999999988 7888888887764 6777776643
No 398
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=1.2e-25 Score=283.52 Aligned_cols=191 Identities=24% Similarity=0.353 Sum_probs=152.4
Q ss_pred CccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC---CCcEEEEcC----------eEEEEeCCCC-CCCCCHH
Q 000674 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK---ISGTVNLYG----------SIAYVSQTSW-IQSGSIR 675 (1358)
Q Consensus 610 ~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~---~~G~i~~~g----------~i~yv~Q~~~-~~~~tv~ 675 (1358)
..+|+|++.-+++|+.+.+.||.||||||||+++.|..+. ..|+|..+| .++|++|+.+ +...|||
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 4689999999999999999999999999999999999864 356888877 4999999765 6788999
Q ss_pred HHHhcCC-------CCC---HHHHH-----HHHHHhccHHHHhcCCCCCCccccCCC-CCCChHHHHHHHHHHHHhcCCC
Q 000674 676 DNILYGK-------PMD---KARYD-----KAIKACALDKDINNFDHGDLTEIGQRG-LNLSGGQKQRIQLARAVYNDAD 739 (1358)
Q Consensus 676 eni~~g~-------~~~---~~~~~-----~~~~~~~l~~dl~~l~~gd~t~ig~~g-~~LSGGQkqRv~LARal~~~~~ 739 (1358)
|-+.|.. .+| +..|. .+++..+| ....+|.+|... .-.|||||.||++|-+++.++.
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL-------~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~ 280 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGL-------DHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPAS 280 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCc-------hhhccceecccccccccCcccceeeeeeeeecCcc
Confidence 9998842 122 22222 23333333 334456676543 5689999999999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhHh-cCCcEEEEEcCCcch--hhccCeEEEEeCCeEEEecChHHHHh
Q 000674 740 IYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEF--LSEVDRILVLEGGQITQSGNYQELLL 807 (1358)
Q Consensus 740 illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~--l~~~d~i~~l~~G~i~~~g~~~~l~~ 807 (1358)
++++||+|.|||..++-++.+.+.... .-+.|.++.-|+... .+..|+|.+|.+|+++++|+.++.+.
T Consensus 281 ~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 281 ILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred eeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 999999999999999998876555433 347788888888753 55689999999999999999998863
No 399
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.94 E-value=7.6e-27 Score=259.29 Aligned_cols=180 Identities=23% Similarity=0.322 Sum_probs=123.5
Q ss_pred CCccceeEEEEeeCCeEEEEECCCCCCHHHHH-HHHhC--------------------CccCCCcEEEEcC-eEEEEeCC
Q 000674 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLL-YAILG--------------------EIPKISGTVNLYG-SIAYVSQT 666 (1358)
Q Consensus 609 ~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl-~~ilG--------------------~~~~~~G~i~~~g-~i~yv~Q~ 666 (1358)
+.++|+|+||++++||+++|+|+||||||||+ ..+.+ ...|..+. +.| ..++..|+
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 84 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDS--IEGLSPAIAIDQ 84 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCcccccc--ccCCCceEEecC
Confidence 35799999999999999999999999999996 33321 01111111 112 23444444
Q ss_pred CC-CC--CCCHH---HHHhc-CCCCCH---HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhc
Q 000674 667 SW-IQ--SGSIR---DNILY-GKPMDK---ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN 736 (1358)
Q Consensus 667 ~~-~~--~~tv~---eni~~-g~~~~~---~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~ 736 (1358)
+. .. ..++. +...+ ...+.. ....+.++.+++ .+. ....++.+||||||||++||||++.
T Consensus 85 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l---------~~~-~~~~~~~~LSgG~~qrv~laral~~ 154 (226)
T cd03270 85 KTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGL---------GYL-TLSRSAPTLSGGEAQRIRLATQIGS 154 (226)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCC---------Ccc-cccCccCcCCHHHHHHHHHHHHHHh
Confidence 43 11 12322 21111 100111 111222333322 211 1346788999999999999999999
Q ss_pred CC--CEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEE------eCCeEEEec
Q 000674 737 DA--DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVL------EGGQITQSG 800 (1358)
Q Consensus 737 ~~--~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l------~~G~i~~~g 800 (1358)
+| +++||||||++||+.+.+.+.+.+.....+|.|+|++||+++.+..||++++| ++|+|+++|
T Consensus 155 ~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 155 GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 98 59999999999999999999887765555689999999999998889999999 999999876
No 400
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=9.6e-27 Score=291.17 Aligned_cols=207 Identities=27% Similarity=0.428 Sum_probs=174.1
Q ss_pred CcEEEEeeEEEeCCC--CCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC---CCcEEEEcC---------
Q 000674 593 RSVKIQEGNFSWDPE--LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK---ISGTVNLYG--------- 658 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~--~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~---~~G~i~~~g--------- 658 (1358)
..+.++|.+..-+.. ..+.+|+|||.++++||+.||.||+||||||||++|+|-.+. .+|+|.++|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~ 103 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFR 103 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhh
Confidence 456778887776544 246799999999999999999999999999999999999974 799999999
Q ss_pred -eEEEEeCCCC-CCCCCHHHHHhcC------CCCC----HHHHHHHHHHhccHHHHhcCCCCCCccccC-CCCCCChHHH
Q 000674 659 -SIAYVSQTSW-IQSGSIRDNILYG------KPMD----KARYDKAIKACALDKDINNFDHGDLTEIGQ-RGLNLSGGQK 725 (1358)
Q Consensus 659 -~i~yv~Q~~~-~~~~tv~eni~~g------~~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~-~g~~LSGGQk 725 (1358)
..|||.|+.. +.+.||+|++.|. ...+ +++++++++.-+|. +.+ +|.||. ....+|||||
T Consensus 104 ~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~-~~~------~t~ig~~~~rgiSGGEr 176 (613)
T KOG0061|consen 104 KISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE-KCA------DTLIGNPGIRGLSGGER 176 (613)
T ss_pred heeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh-hhc------cceecCCCCCccccchh
Confidence 3899999876 5678999999874 2122 35666777777666 332 456653 2357999999
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcch--hhccCeEEEEeCCeEEEecChH
Q 000674 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF--LSEVDRILVLEGGQITQSGNYQ 803 (1358)
Q Consensus 726 qRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~--l~~~d~i~~l~~G~i~~~g~~~ 803 (1358)
+||++|.-+..||.|++|||||||||..++.++.+.+.+...+|||||++=|++.. ....|++++|.+|++++.|+++
T Consensus 177 kRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~ 256 (613)
T KOG0061|consen 177 KRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPR 256 (613)
T ss_pred hHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHH
Confidence 99999999999999999999999999999999998887777789999999999964 4668999999999999999998
Q ss_pred HHH
Q 000674 804 ELL 806 (1358)
Q Consensus 804 ~l~ 806 (1358)
++.
T Consensus 257 ~~~ 259 (613)
T KOG0061|consen 257 ELL 259 (613)
T ss_pred HHH
Confidence 775
No 401
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=8.3e-26 Score=237.34 Aligned_cols=200 Identities=24% Similarity=0.344 Sum_probs=162.6
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCc--cCCCcEEEEcCe-------------
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLYGS------------- 659 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~--~~~~G~i~~~g~------------- 659 (1358)
++++|...+-..+ +++|+++||+|++||+.+|.||||||||||.++|+|.- ++++|+|.++|.
T Consensus 4 L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 4 LEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred eEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 5788888776532 47999999999999999999999999999999999984 789999999983
Q ss_pred -EEEEeCCCC-CCCCCHHHHHhcCC----CC---C---HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000674 660 -IAYVSQTSW-IQSGSIRDNILYGK----PM---D---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1358)
Q Consensus 660 -i~yv~Q~~~-~~~~tv~eni~~g~----~~---~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 727 (1358)
+...+|.|. ++.-|+.+-+.-+. .. . .++.++.++..++++++.. ..+ ...+|||+|.|
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~------R~v---N~GFSGGEkKR 152 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLE------RYV---NEGFSGGEKKR 152 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhh------ccc---CCCcCcchHHH
Confidence 889999987 55668888776431 11 1 2344455555666653321 112 23599999999
Q ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhcc--CeEEEEeCCeEEEecChHHH
Q 000674 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV--DRILVLEGGQITQSGNYQEL 805 (1358)
Q Consensus 728 v~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~--d~i~~l~~G~i~~~g~~~~l 805 (1358)
.-|+.++..+|++.|||||-||||...-+.+.+-+-....+|.+++++||.-+.+... |++.+|-+|+|+.+|.+ ++
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el 231 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-EL 231 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HH
Confidence 9999999999999999999999999999887766555566799999999999999875 99999999999999998 66
Q ss_pred H
Q 000674 806 L 806 (1358)
Q Consensus 806 ~ 806 (1358)
.
T Consensus 232 ~ 232 (251)
T COG0396 232 A 232 (251)
T ss_pred H
Confidence 4
No 402
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=3.5e-26 Score=227.48 Aligned_cols=217 Identities=24% Similarity=0.337 Sum_probs=163.6
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------- 658 (1358)
-+++++.+..|.+. .-.+|+||++.|||..+|||.+||||||||++|.|-+.|+.|+|....
T Consensus 6 LL~V~~lsk~Yg~~---~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGPG---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCCC---cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 56788899999864 357999999999999999999999999999999999999999998752
Q ss_pred -------eEEEEeCCCCC---CCCCHHHHHhcC-CCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000674 659 -------SIAYVSQTSWI---QSGSIRDNILYG-KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1358)
Q Consensus 659 -------~i~yv~Q~~~~---~~~tv~eni~~g-~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 727 (1358)
.-|+|.|+|.- ..-|.-.||--- .......|-++-.. + .+.++..+ =|.+.|.+.+.+.|||++||
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~-a-~~WL~~VE-I~~~RiDD~PrtFSGGMqQR 159 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAE-A-QDWLEEVE-IDLDRIDDLPRTFSGGMQQR 159 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHH-H-HHHHHhcc-cCcccccCcccccchHHHHH
Confidence 27999999841 111222333100 00111223222111 1 11223222 24556778899999999999
Q ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc-CCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHH
Q 000674 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1358)
Q Consensus 728 v~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1358)
+.|||-+...|+++++||||.+||..+..++.+.+..... -+-.+|+||||+....- +||..||++|+++++|-.+.+
T Consensus 160 LQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTDrv 239 (258)
T COG4107 160 LQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRV 239 (258)
T ss_pred HHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecccccccc
Confidence 9999999999999999999999999999999875544332 37799999999999886 899999999999999988888
Q ss_pred HhcCc-hHHHHH
Q 000674 806 LLAGT-AFEQLV 816 (1358)
Q Consensus 806 ~~~~~-~~~~~~ 816 (1358)
+.... .|.+++
T Consensus 240 LDDP~hPYTQLL 251 (258)
T COG4107 240 LDDPHHPYTQLL 251 (258)
T ss_pred ccCCCCchHHHH
Confidence 76543 344443
No 403
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.93 E-value=1.1e-25 Score=252.20 Aligned_cols=182 Identities=24% Similarity=0.379 Sum_probs=129.8
Q ss_pred ccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHh--------CCc--cCCCcEEEE----cCeEEEEeCCCC--------
Q 000674 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL--------GEI--PKISGTVNL----YGSIAYVSQTSW-------- 668 (1358)
Q Consensus 611 ~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~il--------G~~--~~~~G~i~~----~g~i~yv~Q~~~-------- 668 (1358)
..|+|++++||.|.+++|+|++|||||||++.++ +.. .|..++... -..+-+|.|.|.
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4699999999999999999999999999998663 111 122221110 012344444332
Q ss_pred ---------------------------------------CCCCCHHHHHhcCCCCC-HHHHHHHHHHhccHHHHhcCCCC
Q 000674 669 ---------------------------------------IQSGSIRDNILYGKPMD-KARYDKAIKACALDKDINNFDHG 708 (1358)
Q Consensus 669 ---------------------------------------~~~~tv~eni~~g~~~~-~~~~~~~~~~~~l~~dl~~l~~g 708 (1358)
+.+.|+.||+.|-..+. .++..+.++ .+..+
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~---------~vgL~ 159 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLC---------DVGLG 159 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHH---------HcCCc
Confidence 23445555554422211 111222222 22222
Q ss_pred CCccccCCCCCCChHHHHHHHHHHHHhcC---CCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhcc
Q 000674 709 DLTEIGQRGLNLSGGQKQRIQLARAVYND---ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV 785 (1358)
Q Consensus 709 d~t~ig~~g~~LSGGQkqRv~LARal~~~---~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~ 785 (1358)
+. ..+++..+||||||||++||||+.++ |++++|||||++||++..+.+.+.+.....+|.|+|++||+++++..|
T Consensus 160 ~l-~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~a 238 (261)
T cd03271 160 YI-KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCA 238 (261)
T ss_pred hh-hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC
Confidence 21 24678889999999999999999996 799999999999999999999876655555689999999999999889
Q ss_pred CeEEEE------eCCeEEEecCh
Q 000674 786 DRILVL------EGGQITQSGNY 802 (1358)
Q Consensus 786 d~i~~l------~~G~i~~~g~~ 802 (1358)
|++++| ++|+|+++|++
T Consensus 239 D~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 239 DWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CEEEEecCCcCCCCCEEEEeCCC
Confidence 999999 89999999874
No 404
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.93 E-value=8.8e-25 Score=290.65 Aligned_cols=94 Identities=27% Similarity=0.477 Sum_probs=84.2
Q ss_pred ccCCCCCCChHHHHHHHHHHHHh---cCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEE
Q 000674 713 IGQRGLNLSGGQKQRIQLARAVY---NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRIL 789 (1358)
Q Consensus 713 ig~~g~~LSGGQkqRv~LARal~---~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~ 789 (1358)
.++...+||||||||++||||++ .+|++|||||||++||++..+.+++.+.....+|+|+|+|||+++.+..||+++
T Consensus 803 l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi 882 (1809)
T PRK00635 803 LGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVL 882 (1809)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEE
Confidence 36788899999999999999998 699999999999999999999998876665567899999999999997799999
Q ss_pred EEe------CCeEEEecChHHHH
Q 000674 790 VLE------GGQITQSGNYQELL 806 (1358)
Q Consensus 790 ~l~------~G~i~~~g~~~~l~ 806 (1358)
+|+ +|+++..|+++++.
T Consensus 883 ~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 883 ELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred EEccCCCCCCCEEEEeCCHHHHH
Confidence 996 78999999887764
No 405
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.9e-26 Score=265.56 Aligned_cols=170 Identities=19% Similarity=0.318 Sum_probs=135.9
Q ss_pred HHhhHHHHHHHhhcCCCCCCCCcC------CC---CCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEecCCcEEEEE
Q 000674 1179 NYIISVERIKQFMHIPPEPPAIVE------DK---RPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVV 1249 (1358)
Q Consensus 1179 ~~~~sveRi~e~~~~~~E~~~~~~------~~---~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIV 1249 (1358)
..+.+++|+.+|+..+.|.....+ .. ..+..||..|.|+|+|++++|+++.+++|+||||+|++||++|||
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~Iv 114 (329)
T PRK14257 35 QKLNKYQRAFAWLKLPKQKKAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFI 114 (329)
T ss_pred hccccccchhhHHhcccccchhhhhcccccccccccccCCCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEE
Confidence 456778888888777665432111 10 113469999999999999999765567999999999999999999
Q ss_pred CCCCccHHHHHHHHhcccC-----CCCCEEEEcCEeCC--CCChHHHhhcCceecccccccccchhhhcC--C-CCCCCH
Q 000674 1250 GRTGSGKTTLISALFRLVE-----PAGGSILIDGVDIC--SMGLKDLRVKLSIIPQEPTLFRGSVRTNLD--P-LGLYSD 1319 (1358)
Q Consensus 1250 GrTGSGKSTL~~lL~R~~e-----~~~G~I~IDGvDI~--~i~l~~LRs~IsiVpQdp~LF~GTIR~NLd--p-~~~~sD 1319 (1358)
||||||||||+++|+|+++ |++|+|.|||+||+ ++++.++|+++++|||+|.+|++|+++||+ | +..++|
T Consensus 115 G~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~ 194 (329)
T PRK14257 115 GPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGIND 194 (329)
T ss_pred CCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCCh
Confidence 9999999999999999997 57999999999997 567789999999999999999999999997 3 334566
Q ss_pred HHH-----HHHHHHcCCchHHhcCCCccccccccCCcCCCCC
Q 000674 1320 DEI-----WKALEKCQLKTTISSLPNKLDSSEQITYDYGWSS 1356 (1358)
Q Consensus 1320 eeI-----~~AL~~a~l~~~I~~Lp~Gldt~v~e~g~~n~s~ 1356 (1358)
++. .++++.++++ +++++.+++.|. |.|.
T Consensus 195 ~~~~~~~~~~~l~~~~L~-------~~l~~~~~~~~~-~LSg 228 (329)
T PRK14257 195 RKILEKIVEKSLKSAALW-------DEVKDDLDKAGN-ALSG 228 (329)
T ss_pred HHHHHHHHHHHHHHcCCc-------chhhhhhhCCcc-cCCH
Confidence 654 4566777764 446677888888 7764
No 406
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.4e-25 Score=228.33 Aligned_cols=164 Identities=24% Similarity=0.366 Sum_probs=133.3
Q ss_pred CCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe------------EEEEeCCCCC-CCCCHH
Q 000674 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------IAYVSQTSWI-QSGSIR 675 (1358)
Q Consensus 609 ~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g~------------i~yv~Q~~~~-~~~tv~ 675 (1358)
+...+.++||++.+||.+.|.|||||||||||++|.|+++|++|+|.++|. .-|..-++-+ ...|+.
T Consensus 14 e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ 93 (209)
T COG4133 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTAL 93 (209)
T ss_pred cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHH
Confidence 357899999999999999999999999999999999999999999999862 3344444544 467999
Q ss_pred HHHhcCCC----CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Q 000674 676 DNILYGKP----MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVD 751 (1358)
Q Consensus 676 eni~~g~~----~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep~s~lD 751 (1358)
||+.|-.. -+.+...++++..+|.. ++.+ +..+||-|||+||+|||-..+.+++.|||||+++||
T Consensus 94 ENL~F~~~~~~~~~~~~i~~Al~~vgL~g-~~dl----------p~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLD 162 (209)
T COG4133 94 ENLHFWQRFHGSGNAATIWEALAQVGLAG-LEDL----------PVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALD 162 (209)
T ss_pred HHHHHHHHHhCCCchhhHHHHHHHcCccc-cccc----------chhhcchhHHHHHHHHHHHcCCCCceeecCcccccC
Confidence 99998433 34567777888877753 3333 456899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-hHhcCCcEEEEEcCCcchhhc
Q 000674 752 AHTAATLFNECV-MAALEKKTVILVTHQVEFLSE 784 (1358)
Q Consensus 752 ~~~~~~i~~~~~-~~~~~~~tvilvtH~~~~l~~ 784 (1358)
.+....+ ..++ ....+|..||++||+.--+..
T Consensus 163 k~g~a~l-~~l~~~H~~~GGiVllttHq~l~~~~ 195 (209)
T COG4133 163 KEGVALL-TALMAAHAAQGGIVLLTTHQPLPIAS 195 (209)
T ss_pred HHHHHHH-HHHHHHHhcCCCEEEEecCCccCCCc
Confidence 9987764 4444 445678899999999765543
No 407
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.93 E-value=1.1e-25 Score=230.52 Aligned_cols=123 Identities=37% Similarity=0.603 Sum_probs=108.6
Q ss_pred ceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEEEeCCCCCCC-CCHHHHH
Q 000674 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWIQS-GSIRDNI 678 (1358)
Q Consensus 613 l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------~i~yv~Q~~~~~~-~tv~eni 678 (1358)
|+|+|+++++||+++|+|+||||||||+++|+|.++|++|+|.++| .++|++|++.++. .|++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 6899999999999999999999999999999999999999999987 4999999987654 579999
Q ss_pred hcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCC
Q 000674 679 LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFS 748 (1358)
Q Consensus 679 ~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep~s 748 (1358)
...++++++++.+++... ..+.++.++..||||||||++||||++++|++++||||||
T Consensus 80 -----~~~~~~~~~l~~l~~~~~-------~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -----ESDERIEEVLKKLGLEDL-------LDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -----HHHHHHHHHHHHTTHGGG-------TGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -----cccccccccccccccccc-------cccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 345577778887776652 2346778889999999999999999999999999999996
No 408
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.92 E-value=5.1e-21 Score=219.29 Aligned_cols=451 Identities=17% Similarity=0.238 Sum_probs=265.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHH---HHHHHHhHHHHHhhHHHHHHHHHHH
Q 000674 325 IITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGE---IVNYIAVDAYRMGEFPFWFHLTWSL 401 (1358)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~---ivNlms~D~~~i~~~~~~~~~~w~~ 401 (1358)
++.++-.++.+..-.|...+++...|+-|+.-.|++=+.-..--+-...-|. .=|-++.|+..+.+....+..-..-
T Consensus 164 ~liaiPAtFvNS~Iryle~klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtK 243 (728)
T KOG0064|consen 164 FLIAIPASFVNSAIRYLESKLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTK 243 (728)
T ss_pred HhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhh
Confidence 3444455566666678888999999999999999987753211000001122 2356888998887755443333333
Q ss_pred H-HHHHHHHHHHHHHH---hHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhHHH
Q 000674 402 A-LQLFLAIGVLFGVV---GLGA--LPGLVLFLICGLLNVPFAKILQKCQSEFMIA-------QDERLRSTSEILNNMKI 468 (1358)
Q Consensus 402 p-lqi~~~~~~L~~~l---G~~~--l~gl~v~~~~~~l~~~~~~~~~~~q~~~m~~-------~D~R~~~~~E~L~~Ik~ 468 (1358)
| +.++++.+-|-... |.+. ++|+++. +. ++.++.++-+.-+. +..--.+=+.++++-..
T Consensus 244 P~lDl~l~s~~L~~s~~s~g~~~~~~~~lvv~-----lT---a~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEE 315 (728)
T KOG0064|consen 244 PVLDLILISFTLLDSATSVGAAGITLAGLVVY-----LT---AFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEE 315 (728)
T ss_pred HHHHHHHHHHHHHhhhccccccchhhhhhHHH-----HH---HHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHH
Confidence 4 56666665555433 2221 2222221 11 22233222221111 11112355677888889
Q ss_pred HHHhchHHHHHHHHHHHHHHHHH---HHHHHH-HHHHHHHH---HHHHHHH--HHHHHHHHHHHHhCCCC--CC-----H
Q 000674 469 IKLQSWEEKFKSLIESRREKEFK---WLSEAQ-LRKAYGTV---IYWMSPT--IISSVIFLGCALTGSAP--LN-----A 532 (1358)
Q Consensus 469 IK~~~wE~~f~~~i~~~R~~El~---~l~~~~-~~~~~~~~---~~~~~p~--~v~~~~f~~~~l~~~~~--Lt-----~ 532 (1358)
|-+|+-.+.-.+++++.-+.=.. ...+.. .......+ -.|.+.- ++++-.++... .+.+. +. -
T Consensus 316 IAfy~GhkvE~~ql~~sy~~L~~qm~li~k~r~~YiMleqF~mKYvWsg~GlvmvsiPI~~~t~-~s~~~~~~~e~~~sr 394 (728)
T KOG0064|consen 316 IAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLEQFVMKYTWSGTGLVMVSIPILTSTL-ASEGTLQLSEEGNSR 394 (728)
T ss_pred HHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeeeeccc-CCCCcccccccchhH
Confidence 99998876666665554333111 111110 00000000 0111100 00100011100 01111 11 1
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCC-----------c---cch-h-c--cccc---
Q 000674 533 STIFT-VLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLD-HELN-----------N---DDV-R-R--ISLQ--- 589 (1358)
Q Consensus 533 ~~~Ft-~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~-~e~~-----------~---~~~-~-~--~~~~--- 589 (1358)
...|+ .=-+.-.....+..+-.....+.|-..--.|+.+.+.- +|.. + ... + + .+.+
T Consensus 395 t~~f~t~r~LL~saAdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~ 474 (728)
T KOG0064|consen 395 TKEFITNRRLLLSAADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTD 474 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccc
Confidence 12232 22233334455555555666666655556677643321 1100 0 000 0 0 0000
Q ss_pred --CCCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeC
Q 000674 590 --KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQ 665 (1358)
Q Consensus 590 --~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--~i~yv~Q 665 (1358)
.....|.++|+-.--|.. ..+...+||+|++|..+.|+||||||||||.++|.|+.|...|...... ++-|+||
T Consensus 475 ~i~~~~gI~lenIpvItP~~--~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQ 552 (728)
T KOG0064|consen 475 AIRNFNGIILENIPVITPAG--DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQ 552 (728)
T ss_pred hhhcccceEEecCceeccCc--ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccC
Confidence 012357788877666543 4578999999999999999999999999999999999999999887753 6999999
Q ss_pred CCCCCCCCHHHHHhcCC--------CCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcC
Q 000674 666 TSWIQSGSIRDNILYGK--------PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1358)
Q Consensus 666 ~~~~~~~tv~eni~~g~--------~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~ 737 (1358)
.|..--+|.||-|.++. .+.+....++++...|+.-++. ..|-+ .+-+--..||||+|||++.||.+|++
T Consensus 553 RPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr-~~g~d-a~~dWkd~LsgGekQR~~mARm~yHr 630 (728)
T KOG0064|consen 553 RPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQR-EGGWD-AVRDWKDVLSGGEKQRMGMARMFYHR 630 (728)
T ss_pred CCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHh-ccChh-hhccHHhhccchHHHHHHHHHHHhcC
Confidence 99988999999999864 3455667777777777754443 22221 12223346999999999999999999
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEE
Q 000674 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVL 791 (1358)
Q Consensus 738 ~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l 791 (1358)
|+.-+|||+|||+-++++..||+.+. ..|-+.|-|||+++..+.-.+.+-.
T Consensus 631 PkyalLDEcTsAvsidvE~~i~~~ak---~~gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 631 PKYALLDECTSAVSIDVEGKIFQAAK---DAGISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred cchhhhhhhhcccccchHHHHHHHHH---hcCceEEEeecCccHHHHHHHHHhc
Confidence 99999999999999999999998653 2478999999999987654443333
No 409
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.92 E-value=1.2e-24 Score=283.82 Aligned_cols=203 Identities=21% Similarity=0.332 Sum_probs=173.6
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g-------------- 658 (1358)
.++..+|.++.|+.... +.+++++.|++||+.++.|+|||||||++++|.|+.+|++|++.++|
T Consensus 563 ~~~~~~~L~k~y~~~~~--Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG--AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecchhh--hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 57888999999986533 89999999999999999999999999999999999999999999976
Q ss_pred eEEEEeCCCCC-CCCCHHHHHhcC---CCCC----HHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000674 659 SIAYVSQTSWI-QSGSIRDNILYG---KPMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1358)
Q Consensus 659 ~i~yv~Q~~~~-~~~tv~eni~~g---~~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 730 (1358)
.+|||||+.-+ ...|.||.+.+- +.+. ++..++.+++.+|.+..+ .+..++|||+|+|+++
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~-----------~~~~~ySgG~kRkLs~ 709 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYAN-----------KQVRTYSGGNKRRLSF 709 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhc-----------cchhhCCCcchhhHHH
Confidence 39999998655 578999999762 1122 233455666666665544 3467899999999999
Q ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChHHHHhc
Q 000674 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1358)
|-|+..+|++++||||++|+||+.++++++.+.....+||.+|++||.+++.+. |||+.+|.+|++...|+++++..+
T Consensus 710 aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsr 788 (885)
T KOG0059|consen 710 AIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSR 788 (885)
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhh
Confidence 999999999999999999999999999998766555567799999999999987 999999999999999999998743
No 410
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=5.2e-25 Score=218.75 Aligned_cols=188 Identities=25% Similarity=0.376 Sum_probs=142.9
Q ss_pred EEEEeeEEEeCC----CCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEc--C----------
Q 000674 595 VKIQEGNFSWDP----ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY--G---------- 658 (1358)
Q Consensus 595 i~~~~~~f~~~~----~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~--g---------- 658 (1358)
+.++|+++++.- .-.-|+++|+||+++.||++++-||+|+||||||+++-|.|.|++|+|.+. |
T Consensus 5 l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~p 84 (235)
T COG4778 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84 (235)
T ss_pred eeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccCh
Confidence 456666655532 123479999999999999999999999999999999999999999999874 2
Q ss_pred ---------eEEEEeCCC-CCCCCCHHHHHh-----cCCCCCH--HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCC
Q 000674 659 ---------SIAYVSQTS-WIQSGSIRDNIL-----YGKPMDK--ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1358)
Q Consensus 659 ---------~i~yv~Q~~-~~~~~tv~eni~-----~g~~~~~--~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 721 (1358)
.||||+|-- .++.-+..|-+. -|-+-+. ++....+....+-+.+=.| .+.+.|
T Consensus 85 r~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~L----------aPaTFS 154 (235)
T COG4778 85 REVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSL----------APATFS 154 (235)
T ss_pred HHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcC----------CCcccC
Confidence 489999963 344444444433 2332221 2233334444444433333 467899
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEe
Q 000674 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLE 792 (1358)
Q Consensus 722 GGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~ 792 (1358)
||++|||.|||.++-|-+|+||||||++||+...+-+.+.+...+.+|..+|=+-||-+.=.. |||++.|.
T Consensus 155 GGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 155 GGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred CchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 999999999999999999999999999999999998887666667789999999999776555 79988774
No 411
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.91 E-value=1.8e-24 Score=234.63 Aligned_cols=153 Identities=21% Similarity=0.208 Sum_probs=120.3
Q ss_pred eeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCc---------EEEEc----------CeEEEEeCCCCCCCCCH
Q 000674 614 RGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISG---------TVNLY----------GSIAYVSQTSWIQSGSI 674 (1358)
Q Consensus 614 ~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G---------~i~~~----------g~i~yv~Q~~~~~~~tv 674 (1358)
+++++++++| +++|+||||||||||+++|.|.+++..| ++... .+|+|++|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 9999999999999999999998866532 34332 2689999999877
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHh----cCCCEEEEcCCCCCC
Q 000674 675 RDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY----NDADIYLFDDPFSAV 750 (1358)
Q Consensus 675 ~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~----~~~~illLDep~s~l 750 (1358)
|+.. ..++.+++++. + + ....+..+||||||||++||||+. ++|++++||||+++|
T Consensus 89 -----~~~~-~~~~~~~~l~~----------~-~---~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~L 148 (197)
T cd03278 89 -----YSII-SQGDVSEIIEA----------P-G---KKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAAL 148 (197)
T ss_pred -----eeEE-ehhhHHHHHhC----------C-C---ccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccC
Confidence 3221 23344444443 1 1 112567889999999999999986 577999999999999
Q ss_pred CHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEe
Q 000674 751 DAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLE 792 (1358)
Q Consensus 751 D~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~ 792 (1358)
|+.....+.+.+.. ..++.|+|++||+++.+..||+++.|.
T Consensus 149 D~~~~~~l~~~l~~-~~~~~tiIiitH~~~~~~~~d~v~~~~ 189 (197)
T cd03278 149 DDANVERFARLLKE-FSKETQFIVITHRKGTMEAADRLYGVT 189 (197)
T ss_pred CHHHHHHHHHHHHH-hccCCEEEEEECCHHHHhhcceEEEEE
Confidence 99999998875544 345789999999999988899999885
No 412
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.90 E-value=3.3e-24 Score=247.80 Aligned_cols=200 Identities=23% Similarity=0.340 Sum_probs=169.2
Q ss_pred CCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEc--CeEEEEeCCCC-
Q 000674 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY--GSIAYVSQTSW- 668 (1358)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~--g~i~yv~Q~~~- 668 (1358)
...|.++|++|.|+.+. .+++++||-+..++.+++|||||+||||||+++.|++.|..|.|.-. ..+++..|+-.
T Consensus 387 ~pvi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e 464 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAE 464 (614)
T ss_pred CCeEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHh
Confidence 45789999999998754 68999999999999999999999999999999999999999999754 35778788643
Q ss_pred --CCCCCHHHHHh--cCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEc
Q 000674 669 --IQSGSIRDNIL--YGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744 (1358)
Q Consensus 669 --~~~~tv~eni~--~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLD 744 (1358)
-...+.-|++. |......+.++.++..|+|..|.+.. ...+||+|||.||..||.++..|.+|+||
T Consensus 465 ~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~----------p~~~LS~Gqr~rVlFa~l~~kqP~lLlLD 534 (614)
T KOG0927|consen 465 QLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVV----------PMSQLSDGQRRRVLFARLAVKQPHLLLLD 534 (614)
T ss_pred hcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCcccccc----------chhhcccccchhHHHHHHHhcCCcEEEec
Confidence 34668888886 44445678899999999999877653 45689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEE-EecChHHHH
Q 000674 745 DPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSGNYQELL 806 (1358)
Q Consensus 745 ep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~g~~~~l~ 806 (1358)
|||++||..+...+-+ .++.. ..++|+||||..++.+ +++|.+++||.+. ..|.+....
T Consensus 535 EPtnhLDi~tid~lae-aiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk 595 (614)
T KOG0927|consen 535 EPTNHLDIETIDALAE-AINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYK 595 (614)
T ss_pred CCCcCCCchhHHHHHH-HHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHH
Confidence 9999999999887654 33322 3489999999999988 7999999999886 678887764
No 413
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.90 E-value=7.8e-21 Score=229.15 Aligned_cols=386 Identities=17% Similarity=0.165 Sum_probs=258.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccChh------hHHHHHhcCHHHHHhhcH
Q 000674 937 LIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVG------RILTRLSSDLSILDFDIP 1010 (1358)
Q Consensus 937 ~l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G------~IlnRfs~D~~~id~~l~ 1010 (1358)
.+.+|.++..+..++...+.++......+....|-+.++++-+.-- +||-....| ..=.|+..|+...-...-
T Consensus 88 ~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~-~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~ 166 (604)
T COG4178 88 QLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPR-RYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTL 166 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHhcccccCCCChHHhHHHHHHHHHhhHH
Confidence 3567777777777777778888888888888888888888888776 555444443 234688888876655444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------hHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 000674 1011 FSIVFVAASGTELLAIIGIMTFV---------------TWQVLVV----AIFAMVAVRFVQRYYIATARELIRINGTTKA 1071 (1358)
Q Consensus 1011 ~~l~~~~~~~~~~l~~i~v~~~~---------------~~~l~~~----~l~~~~~~~~~~~~y~~~sr~l~rl~~~~~s 1071 (1358)
.....++.++++++...+++.-. ...+..+ ++....+..++.+...+-.-+..+.|+.-|.
T Consensus 167 ~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~ 246 (604)
T COG4178 167 DLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRY 246 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHH
Confidence 44444555555554444444311 1111111 1112222334555555556666666666665
Q ss_pred hHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCccch
Q 000674 1072 PVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTA-ALFLVLIPRGYVAP 1150 (1358)
Q Consensus 1072 pl~s~~~Etl~G~~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~-~~~~~l~~~g~is~ 1150 (1358)
.+. -.-+....|-.|+-|+...++..+..+.-.+.+......+.++...-...+-+.+++- .+.+-....|.++.
T Consensus 247 ~Lv----rv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~ 322 (604)
T COG4178 247 SLV----RVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITF 322 (604)
T ss_pred HHH----HHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChH
Confidence 433 2345566777888777666666555554444443333333333322222222222111 11122235789999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhc------CCCCCCCCcCCCCCCCCCCCcceEEEEEEEEE
Q 000674 1151 GLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMH------IPPEPPAIVEDKRPPSSWPFKGRIELRQLKIR 1224 (1358)
Q Consensus 1151 g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~------~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~ 1224 (1358)
|.+..+.+...++...+.|++..+..+..-.++..|+.++.+ .++|.+.... .+....-..+..|+|+|++..
T Consensus 323 G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~nl~l~ 401 (604)
T COG4178 323 GGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTG-RRIDFDDNADHGITLENLSLR 401 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccc-ccccccccccceeEEeeeeEE
Confidence 999999998899999999999999999999999999999863 2222211100 000000001468999999999
Q ss_pred eCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCceecccccccc
Q 000674 1225 YRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFR 1304 (1358)
Q Consensus 1225 Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~IsiVpQdp~LF~ 1304 (1358)
-+++. ..|+++||+|+|||.+-|.|+||||||||+++|.|+++.-+|+|.+=. -+++-++||.|++=.
T Consensus 402 ~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~ 469 (604)
T COG4178 402 TPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQ 469 (604)
T ss_pred CCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCC
Confidence 87665 689999999999999999999999999999999999999999987641 156889999999999
Q ss_pred cchhhhcC-CCC--CCCHHHHHHHHHHcCCchHHhcCCC
Q 000674 1305 GSVRTNLD-PLG--LYSDDEIWKALEKCQLKTTISSLPN 1340 (1358)
Q Consensus 1305 GTIR~NLd-p~~--~~sDeeI~~AL~~a~l~~~I~~Lp~ 1340 (1358)
||+|+=|. |.. .++|+|+.++|.+|+|.+++.++.+
T Consensus 470 GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~ 508 (604)
T COG4178 470 GTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE 508 (604)
T ss_pred ccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc
Confidence 99999984 443 3899999999999999999998753
No 414
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.89 E-value=1e-22 Score=226.31 Aligned_cols=141 Identities=55% Similarity=0.963 Sum_probs=130.2
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcC
Q 000674 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1358)
Q Consensus 1214 G~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~I 1293 (1358)
|.|+++|++++|+.+..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 57999999999975444699999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecccccccccchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCccccccccCCcCCCC
Q 000674 1294 SIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSEQITYDYGWS 1355 (1358)
Q Consensus 1294 siVpQdp~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~Gldt~v~e~g~~n~s 1355 (1358)
+++||+|.+|++|+++|++++...+++++.++++..++.+++..+|.|+++...+.+. +-|
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~-~LS 141 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGE-NLS 141 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCC-cCC
Confidence 9999999999999999999776677889999999999999999999999999877665 544
No 415
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.89 E-value=1.1e-22 Score=224.11 Aligned_cols=180 Identities=17% Similarity=0.208 Sum_probs=126.1
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEee-CCeEEEEECCCCCCHHHHHHHHhCCc-cCCCcEEEE------------cCe
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIK-WAQKIAVCGSVGAGKSSLLYAILGEI-PKISGTVNL------------YGS 659 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~-~G~~~~i~G~~GsGKStLl~~ilG~~-~~~~G~i~~------------~g~ 659 (1358)
.|+++|.. +|..+ .+++|+.. +|++++|+||||||||||+++|.+.+ .+..+.... ...
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAE 77 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEE
Confidence 46777766 55422 56777654 58999999999999999999999543 333333322 125
Q ss_pred EEEEeCCCCCCCCCHHHHHhcCCCCCHHHHHHHH--HHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhc-
Q 000674 660 IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAI--KACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN- 736 (1358)
Q Consensus 660 i~yv~Q~~~~~~~tv~eni~~g~~~~~~~~~~~~--~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~- 736 (1358)
|++++|++.......+ +. ..+.+.+.+.+ +...+ .+.+..++.+||||||||++||||++.
T Consensus 78 v~~~f~~~~~~~~~~r----~~-gl~~~~~~~~~~l~~g~l-----------~~~l~~~~~~lS~G~~~r~~la~al~~~ 141 (213)
T cd03279 78 VSFTFQLGGKKYRVER----SR-GLDYDQFTRIVLLPQGEF-----------DRFLARPVSTLSGGETFLASLSLALALS 141 (213)
T ss_pred EEEEEEECCeEEEEEE----ec-CCCHHHHHHhhhhhhcch-----------HHHhcCCccccCHHHHHHHHHHHHHHhH
Confidence 8888888743211111 11 23333333221 11112 123346788999999999999999984
Q ss_pred ---------CCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeE
Q 000674 737 ---------DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1358)
Q Consensus 737 ---------~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1358)
+|++++|||||++||+...+.+.+.+.....+++|+|++||+++++.. +|+++++++|.+
T Consensus 142 p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 142 EVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 679999999999999999999876554444458899999999999876 799999999864
No 416
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.88 E-value=1.5e-22 Score=221.00 Aligned_cols=155 Identities=21% Similarity=0.293 Sum_probs=122.8
Q ss_pred eEEEEeeCCeEEEEECCCCCCHHHHHHHH----hCCccCCCcEEEEc----------CeEEEEeCCC-C----C-CCCCH
Q 000674 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAI----LGEIPKISGTVNLY----------GSIAYVSQTS-W----I-QSGSI 674 (1358)
Q Consensus 615 ~i~l~i~~G~~~~i~G~~GsGKStLl~~i----lG~~~~~~G~i~~~----------g~i~yv~Q~~-~----~-~~~tv 674 (1358)
..++++.+| +++|+||||||||||+.+| .|..+|.+|.+..+ ..|++++|++ + + .+.|+
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~ 93 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAI 93 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhH
Confidence 345667777 9999999999999999999 49999988765311 2599999987 2 1 23489
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHH------HHHHHHHhcCCCEEEEcCCCC
Q 000674 675 RDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR------IQLARAVYNDADIYLFDDPFS 748 (1358)
Q Consensus 675 ~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR------v~LARal~~~~~illLDep~s 748 (1358)
.||+.++. +++.++.+ .+.+.+|||||||| ++||||+..+|++++||||++
T Consensus 94 ~~~~~~~~---~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~ 150 (204)
T cd03240 94 LENVIFCH---QGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTT 150 (204)
T ss_pred hhceeeec---hHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCcc
Confidence 99998752 22222111 35677999999996 789999999999999999999
Q ss_pred CCCHHHHH-HHHHHHHhHhcC-CcEEEEEcCCcchhhccCeEEEEeC
Q 000674 749 AVDAHTAA-TLFNECVMAALE-KKTVILVTHQVEFLSEVDRILVLEG 793 (1358)
Q Consensus 749 ~lD~~~~~-~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~ 793 (1358)
+||+...+ .+.+.+.....+ ++|+|++||+++.+..||+++.|++
T Consensus 151 ~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 151 NLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred ccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 99999999 887766544444 7899999999998888999999964
No 417
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.88 E-value=1.8e-22 Score=229.17 Aligned_cols=143 Identities=45% Similarity=0.730 Sum_probs=130.4
Q ss_pred CcceEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhh
Q 000674 1212 FKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291 (1358)
Q Consensus 1212 ~~G~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs 1291 (1358)
..|.|+++|++++|+.....+|+|+||+|+|||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+.+...+|+
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 46899999999999654346999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceecccccccccchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCccccccccCCcCCCC
Q 000674 1292 KLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSEQITYDYGWS 1355 (1358)
Q Consensus 1292 ~IsiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~Gldt~v~e~g~~n~s 1355 (1358)
+++++||+|.+|++|+++|+++.....+++++++++.+++.+.+..+|.|+++.+++.+. +-|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~-~LS 158 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGE-NFS 158 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCC-cCC
Confidence 999999999999999999998754456778899999999999999999999999888666 544
No 418
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.88 E-value=4.8e-22 Score=235.34 Aligned_cols=182 Identities=27% Similarity=0.423 Sum_probs=148.8
Q ss_pred cceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe--------------EEEEeCCC----CCCCCC
Q 000674 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------------IAYVSQTS----WIQSGS 673 (1358)
Q Consensus 612 ~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g~--------------i~yv~Q~~----~~~~~t 673 (1358)
.++|+||++++||+++|.|-.|||+|-|+++|.|.-++.+|+|.++|+ |+|||.+- .+...+
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~s 353 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS 353 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCc
Confidence 478999999999999999999999999999999998999999999984 99999873 467889
Q ss_pred HHHHHhcCC--------CCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcC
Q 000674 674 IRDNILYGK--------PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1358)
Q Consensus 674 v~eni~~g~--------~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDe 745 (1358)
|++||.+.. ..+..+-++..+. ...+++.=..+ ......+||||.+|+|.|||.|+.+|+++||||
T Consensus 354 I~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~--~~~~l~Ik~~s----~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDE 427 (500)
T COG1129 354 IAENITLASLRRFSRRGLIDRRKERALAER--YIRRLRIKTPS----PEQPIGTLSGGNQQKVVLARWLATDPKVLILDE 427 (500)
T ss_pred HHHheehHhhhhhccccccChHHHHHHHHH--HHHhcCcccCC----ccchhhcCCchhhhhHHHHHHHhcCCCEEEECC
Confidence 999997651 1222222222221 12222211111 224567899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhh-ccCeEEEEeCCeEEEe
Q 000674 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQS 799 (1358)
Q Consensus 746 p~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~ 799 (1358)
||.|+|.-...+||+.+.....+|++||++|.++.++- .||||+||++|+|+..
T Consensus 428 PTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e 482 (500)
T COG1129 428 PTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGE 482 (500)
T ss_pred CCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEE
Confidence 99999999999999887778889999999999998865 5999999999999864
No 419
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=9.2e-22 Score=219.46 Aligned_cols=200 Identities=23% Similarity=0.359 Sum_probs=136.7
Q ss_pred cEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCCCCCCCC
Q 000674 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGS 673 (1358)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g~i~yv~Q~~~~~~~t 673 (1358)
.|.++|.+.+-. .+..+.|.|+.|-.|..+++|||||-||||||+-|..---..-- +-.+-||-|+..-...|
T Consensus 264 DIKiEnF~ISA~---Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPp----nIDvLlCEQEvvad~t~ 336 (807)
T KOG0066|consen 264 DIKIENFDISAQ---GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPP----NIDVLLCEQEVVADSTS 336 (807)
T ss_pred cceeeeeeeecc---cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCC----CCceEeeeeeeeecCcH
Confidence 577777766643 34588999999999999999999999999999999743211001 11467888886655555
Q ss_pred HHHHHhcC---------------------CCCCHHHHHHHHHH---hc-------cHHHHhcCCCCCCccccCCC-CCCC
Q 000674 674 IRDNILYG---------------------KPMDKARYDKAIKA---CA-------LDKDINNFDHGDLTEIGQRG-LNLS 721 (1358)
Q Consensus 674 v~eni~~g---------------------~~~~~~~~~~~~~~---~~-------l~~dl~~l~~gd~t~ig~~g-~~LS 721 (1358)
.-+.|+-. .....++.+++.+. .+ ..+-+.. .|-..+..+++ ..+|
T Consensus 337 Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAG--LGFskEMQ~rPt~kFS 414 (807)
T KOG0066|consen 337 AIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAG--LGFSKEMQERPTTKFS 414 (807)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhh--cCCChhHhcCCccccC
Confidence 54444321 11112333333221 11 1112222 22233333444 5799
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEE-Ee
Q 000674 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QS 799 (1358)
Q Consensus 722 GGQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~ 799 (1358)
||-|.||+||||||..|-+|.|||||++||-...-++ ++.++++ .||.++|+||-.|+.. |..|+.+++-++- +.
T Consensus 415 GGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWL-dNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYr 491 (807)
T KOG0066|consen 415 GGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWL-DNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYR 491 (807)
T ss_pred CceeeehhHHHHHhcCceeeeecCCccccccceeeeh-hhHHhhh--hheeEEEecccchHHHHHHHHhhhhhhhhhhhc
Confidence 9999999999999999999999999999999888775 3334444 4799999999999987 8889988887764 55
Q ss_pred cChHHH
Q 000674 800 GNYQEL 805 (1358)
Q Consensus 800 g~~~~l 805 (1358)
|+|.-+
T Consensus 492 GNY~~F 497 (807)
T KOG0066|consen 492 GNYTLF 497 (807)
T ss_pred chHHHH
Confidence 666543
No 420
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.88 E-value=2.6e-22 Score=226.39 Aligned_cols=176 Identities=22% Similarity=0.263 Sum_probs=112.5
Q ss_pred ccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCC----------------ccCCCcEEEEcCeEEEEeCCCCCC----
Q 000674 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE----------------IPKISGTVNLYGSIAYVSQTSWIQ---- 670 (1358)
Q Consensus 611 ~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~----------------~~~~~G~i~~~g~i~yv~Q~~~~~---- 670 (1358)
.++++++ |++++|+||||||||||+++|.+. ..+.+|.....+.|.+++|++.-+
T Consensus 16 ~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~ 90 (243)
T cd03272 16 TVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPID 90 (243)
T ss_pred cccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCC
Confidence 4666665 889999999999999999999843 333334111112234444432110
Q ss_pred --CCCHH-------HHHhcC-CCCCHHHHHHHHHHhccHHHHh--cCCCCCC-------ccccCCCCCCChHHHHHHHHH
Q 000674 671 --SGSIR-------DNILYG-KPMDKARYDKAIKACALDKDIN--NFDHGDL-------TEIGQRGLNLSGGQKQRIQLA 731 (1358)
Q Consensus 671 --~~tv~-------eni~~g-~~~~~~~~~~~~~~~~l~~dl~--~l~~gd~-------t~ig~~g~~LSGGQkqRv~LA 731 (1358)
+.+++ +++.+. .....+.+...++.+++..+-. ..+.|.. ...++++.+||||||||++||
T Consensus 91 ~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~la 170 (243)
T cd03272 91 KEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALA 170 (243)
T ss_pred CCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHHH
Confidence 00111 111111 1123344444444444332100 0112211 123577889999999999999
Q ss_pred HHHh----cCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEe
Q 000674 732 RAVY----NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLE 792 (1358)
Q Consensus 732 Ral~----~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~ 792 (1358)
||++ .+|++++|||||++||+...+.+.+.+... .+++|+|++||+.+....||++++|+
T Consensus 171 ~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~-~~~~~ii~~~h~~~~~~~~d~i~~l~ 234 (243)
T cd03272 171 LIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKEL-SDGAQFITTTFRPELLEVADKFYGVK 234 (243)
T ss_pred HHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHH-hCCCEEEEEecCHHHHhhCCEEEEEE
Confidence 9997 368999999999999999999988765543 34788999999987777799999985
No 421
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.87 E-value=1.4e-21 Score=251.48 Aligned_cols=98 Identities=26% Similarity=0.494 Sum_probs=88.8
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhcCC---CEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEE
Q 000674 713 IGQRGLNLSGGQKQRIQLARAVYNDA---DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRIL 789 (1358)
Q Consensus 713 ig~~g~~LSGGQkqRv~LARal~~~~---~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~ 789 (1358)
.+++..+||||||||+.||||+.++| ++|||||||++||++..+.+.+.+.....+|+|+|++||+++.+..||+|+
T Consensus 824 l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii 903 (943)
T PRK00349 824 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWII 903 (943)
T ss_pred ccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEE
Confidence 46788999999999999999999999 999999999999999999988765555557899999999999998899999
Q ss_pred EE------eCCeEEEecChHHHHhcCc
Q 000674 790 VL------EGGQITQSGNYQELLLAGT 810 (1358)
Q Consensus 790 ~l------~~G~i~~~g~~~~l~~~~~ 810 (1358)
.| ++|+|++.|+++++.....
T Consensus 904 ~Lgp~~G~~~G~Iv~~Gt~~el~~~~~ 930 (943)
T PRK00349 904 DLGPEGGDGGGEIVATGTPEEVAKVEA 930 (943)
T ss_pred EecCCcCCCCCEEEEeCCHHHHHhCcc
Confidence 99 7999999999999986553
No 422
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.86 E-value=8e-22 Score=223.13 Aligned_cols=169 Identities=20% Similarity=0.236 Sum_probs=124.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHhCCccCCC-cEEEEcC----------------eEEEEeCCCC----------CCCCCHH
Q 000674 623 AQKIAVCGSVGAGKSSLLYAILGEIPKIS-GTVNLYG----------------SIAYVSQTSW----------IQSGSIR 675 (1358)
Q Consensus 623 G~~~~i~G~~GsGKStLl~~ilG~~~~~~-G~i~~~g----------------~i~yv~Q~~~----------~~~~tv~ 675 (1358)
..+++|+||||||||||+++|.|.+.+.. |++...+ +|++++|++. .+..||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 45999999999999999999999987753 4544321 6899999852 1245888
Q ss_pred HHHhcCCC---------CCHHHHHHHHHHhccHHH-Hh-cCCCCCC-------ccccCCCCCCChHHHHHHHHHHHHh--
Q 000674 676 DNILYGKP---------MDKARYDKAIKACALDKD-IN-NFDHGDL-------TEIGQRGLNLSGGQKQRIQLARAVY-- 735 (1358)
Q Consensus 676 eni~~g~~---------~~~~~~~~~~~~~~l~~d-l~-~l~~gd~-------t~ig~~g~~LSGGQkqRv~LARal~-- 735 (1358)
+|+..+.. ...+++.+.++.+++..| .. .++.|+- .....++.+||||||||++||||++
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 88765432 123456666777666421 00 0111111 1234677899999999999999998
Q ss_pred --cCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEe
Q 000674 736 --NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLE 792 (1358)
Q Consensus 736 --~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~ 792 (1358)
.+|+++++||||++||+...+++++.+... .+|.|+|++||+.+.+..||+++-+.
T Consensus 185 ~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~-~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLSHTQNIGRMIKTH-FKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred hccCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 588999999999999999999998765443 46889999999988888899998774
No 423
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.86 E-value=9.8e-22 Score=221.66 Aligned_cols=174 Identities=21% Similarity=0.207 Sum_probs=126.1
Q ss_pred EEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------------eEEEEeCCCC--CCCCCHH
Q 000674 618 LDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------------SIAYVSQTSW--IQSGSIR 675 (1358)
Q Consensus 618 l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--------------------~i~yv~Q~~~--~~~~tv~ 675 (1358)
+...++ +++|+||||||||||+.+|.+.+.+..|++...+ .+.|..|++- +...+++
T Consensus 18 ~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~ 96 (247)
T cd03275 18 IGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIIT 96 (247)
T ss_pred ecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEE
Confidence 333344 9999999999999999999988876666554311 1334344321 1222222
Q ss_pred HHHh----cCCCCCHHHHHHHHHHhccHHHHhc--CCCCCCccccC---------CCCCCChHHHHHHHHHHHHhcC---
Q 000674 676 DNIL----YGKPMDKARYDKAIKACALDKDINN--FDHGDLTEIGQ---------RGLNLSGGQKQRIQLARAVYND--- 737 (1358)
Q Consensus 676 eni~----~g~~~~~~~~~~~~~~~~l~~dl~~--l~~gd~t~ig~---------~g~~LSGGQkqRv~LARal~~~--- 737 (1358)
+.-. -|.+.+++.|++.++.|++..+... .+.|+.+.+.+ +..+||||||||++||||++.+
T Consensus 97 ~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~ 176 (247)
T cd03275 97 GGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQ 176 (247)
T ss_pred CCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccC
Confidence 2211 1344667888999999998755332 34555555433 2388999999999999999764
Q ss_pred -CCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEe
Q 000674 738 -ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLE 792 (1358)
Q Consensus 738 -~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~ 792 (1358)
|++++|||||++||+....++.+.+.....+|.|+|+|||+.+.+..||++++|.
T Consensus 177 ~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~ 232 (247)
T cd03275 177 PAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVY 232 (247)
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEE
Confidence 9999999999999999999988765554445889999999999888899999985
No 424
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.85 E-value=1.8e-21 Score=213.98 Aligned_cols=118 Identities=53% Similarity=0.988 Sum_probs=108.2
Q ss_pred CCCcceEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHH
Q 000674 1210 WPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL 1289 (1358)
Q Consensus 1210 wp~~G~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~L 1289 (1358)
||..+.++++|++++|.....++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 89999999999999996533469999999999999999999999999999999999999999999999999999999899
Q ss_pred hhcCceecccccccccchhhhcCCCCCCCHHHHHHHHH
Q 000674 1290 RVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALE 1327 (1358)
Q Consensus 1290 Rs~IsiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~AL~ 1327 (1358)
|++++++||+|.+|++|+++|+..+..++++++.++++
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~ 118 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR 118 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh
Confidence 99999999999999999999997665566777777776
No 425
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.85 E-value=9.5e-22 Score=200.32 Aligned_cols=127 Identities=24% Similarity=0.440 Sum_probs=113.2
Q ss_pred EEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHH---Hhhc
Q 000674 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---LRVK 1292 (1358)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~---LRs~ 1292 (1358)
|+|+||+.+|+.+ +++|+||||+|++||.+=++|+|||||||++++|+|...|++|+|.++|.|++++.-++ ||++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 8999999999877 77999999999999999999999999999999999999999999999999999988655 8999
Q ss_pred Cceeccccccccc-chhhhcC-CCC--CCC----HHHHHHHHHHcCCchHHhcCCCccc
Q 000674 1293 LSIIPQEPTLFRG-SVRTNLD-PLG--LYS----DDEIWKALEKCQLKTTISSLPNKLD 1343 (1358)
Q Consensus 1293 IsiVpQdp~LF~G-TIR~NLd-p~~--~~s----DeeI~~AL~~a~l~~~I~~Lp~Gld 1343 (1358)
||+|.||--|... |+.||+. |.. ..+ .+.+.++|+.+||.+-...+|..|.
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LS 139 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLS 139 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccC
Confidence 9999999998866 9999984 332 123 3457789999999999999998664
No 426
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.85 E-value=3.8e-22 Score=199.22 Aligned_cols=184 Identities=26% Similarity=0.411 Sum_probs=147.7
Q ss_pred cceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe-------------EEEEeCCC-CCCCCCHHHH
Q 000674 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-------------IAYVSQTS-WIQSGSIRDN 677 (1358)
Q Consensus 612 ~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g~-------------i~yv~Q~~-~~~~~tv~en 677 (1358)
-|-.+|.++..||+.-+||||||||||||..+.|+.+ -+|+|.+.|. -||.+|+. -.|.+-|...
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~Y 92 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHY 92 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhh
Confidence 3667889999999999999999999999999999874 6899999983 58998874 3567788888
Q ss_pred HhcCCCCCHHHH---HHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhc-------CCCEEEEcCCC
Q 000674 678 ILYGKPMDKARY---DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN-------DADIYLFDDPF 747 (1358)
Q Consensus 678 i~~g~~~~~~~~---~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~-------~~~illLDep~ 747 (1358)
+....|- +++- +.+.+..++++ ..|+....||||+-|||-||-.+.+ +.+++|+|||.
T Consensus 93 L~L~qP~-~~~a~~i~~i~~~L~l~D-----------KL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~ 160 (248)
T COG4138 93 LTLHQPD-KTRTELLNDVAGALALDD-----------KLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPM 160 (248)
T ss_pred hhhcCch-HHHHHHHHHHHhhhcccc-----------hhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCC
Confidence 8876653 3322 23333333322 2456678999999999999988775 45699999999
Q ss_pred CCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcch-hhccCeEEEEeCCeEEEecChHHHHhc
Q 000674 748 SAVDAHTAATLFNECVMAALEKKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 748 s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~-l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1358)
++||...+..+...+.....+|.|||+.+||++. +++||++..++.|++...|..+|++..
T Consensus 161 ~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 161 NSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred cchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 9999988877655444556689999999999975 888999999999999999999998754
No 427
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.84 E-value=1.4e-20 Score=241.96 Aligned_cols=93 Identities=29% Similarity=0.532 Sum_probs=84.7
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhc---CCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEE
Q 000674 713 IGQRGLNLSGGQKQRIQLARAVYN---DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRIL 789 (1358)
Q Consensus 713 ig~~g~~LSGGQkqRv~LARal~~---~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~ 789 (1358)
.+++..+||||||||+.|||++.. +|++|+|||||++||+...+.+.+.+.....+|+|+|++||+++.+..||+|+
T Consensus 822 l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii 901 (924)
T TIGR00630 822 LGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYII 901 (924)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE
Confidence 467889999999999999999997 59999999999999999999998776555557899999999999998899999
Q ss_pred EE------eCCeEEEecChHHH
Q 000674 790 VL------EGGQITQSGNYQEL 805 (1358)
Q Consensus 790 ~l------~~G~i~~~g~~~~l 805 (1358)
+| ++|+|++.|+++++
T Consensus 902 ~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 902 DLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EecCCccCCCCEEEEeCCHHHh
Confidence 99 79999999998875
No 428
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.84 E-value=1.9e-21 Score=245.90 Aligned_cols=190 Identities=24% Similarity=0.347 Sum_probs=160.1
Q ss_pred CCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEEcC----------eEEEEeCCC-CCCCCCH
Q 000674 608 LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--KISGTVNLYG----------SIAYVSQTS-WIQSGSI 674 (1358)
Q Consensus 608 ~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~--~~~G~i~~~g----------~i~yv~Q~~-~~~~~tv 674 (1358)
..+.+|+||+=-++||.++|++|++||||||||+.|+|-.. ..+|+|.++| .+|||.|+. .+...||
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TV 881 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTV 881 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccch
Confidence 34679999999999999999999999999999999999643 3578888988 489999986 5788899
Q ss_pred HHHHhcCC------CCC-H---HHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCC-CEEEE
Q 000674 675 RDNILYGK------PMD-K---ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA-DIYLF 743 (1358)
Q Consensus 675 ~eni~~g~------~~~-~---~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~-~illL 743 (1358)
||-+.|.. +.+ + +..++|++-.+|++-- +..||..|.-||.+||+|+.||--|..|| .|++|
T Consensus 882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFL 954 (1391)
T KOG0065|consen 882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSILFL 954 (1391)
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCceeEEe
Confidence 99998852 122 2 3346677766665432 24589999999999999999999999999 89999
Q ss_pred cCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcch--hhccCeEEEEe-CCeEEEecChHH
Q 000674 744 DDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF--LSEVDRILVLE-GGQITQSGNYQE 804 (1358)
Q Consensus 744 Dep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~--l~~~d~i~~l~-~G~i~~~g~~~~ 804 (1358)
||||||||+.++..+.+.+.+....|+||+.+-|+++- .+..|+++.|+ +|+.++.|+..+
T Consensus 955 DEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 955 DEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred cCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 99999999999999988877778899999999999974 56789999996 689999998654
No 429
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1.1e-20 Score=210.88 Aligned_cols=199 Identities=21% Similarity=0.381 Sum_probs=153.1
Q ss_pred CcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCC--
Q 000674 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSW-- 668 (1358)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--~i~yv~Q~~~-- 668 (1358)
..+-+.|++|.|+.. .|.+++++|-|.--..++||||||.||||||++|+|.+.|++|+.+-+- +||+..|+..
T Consensus 585 PvLGlH~VtFgy~gq--kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~ 662 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQ--KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEA 662 (807)
T ss_pred CeeecccccccCCCC--CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHh
Confidence 456789999999864 5899999999999999999999999999999999999999999987554 5999999753
Q ss_pred C-CCCCHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCC
Q 000674 669 I-QSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPF 747 (1358)
Q Consensus 669 ~-~~~tv~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep~ 747 (1358)
+ ...|--|.+.-+-..+.+..++.+-..+|..-.. | -+...||||||.||+||---++.|||+||||||
T Consensus 663 L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAH-------T---ikikdLSGGQKaRValaeLal~~PDvlILDEPT 732 (807)
T KOG0066|consen 663 LNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAH-------T---IKIKDLSGGQKARVALAELALGGPDVLILDEPT 732 (807)
T ss_pred hccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccc-------e---EeeeecCCcchHHHHHHHHhcCCCCEEEecCCC
Confidence 2 3447777775333333334445555555543222 2 245679999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhcc-CeEEEEeCCeEEE-ecChHHHH
Q 000674 748 SAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQ-SGNYQELL 806 (1358)
Q Consensus 748 s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~-d~i~~l~~G~i~~-~g~~~~l~ 806 (1358)
++||.++...+-+. ++.. +..||+||||-..+... -..+|+++-.|-+ .|.++++.
T Consensus 733 NNLDIESIDALaEA-Iney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeDYk 790 (807)
T KOG0066|consen 733 NNLDIESIDALAEA-INEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFEDYK 790 (807)
T ss_pred CCcchhhHHHHHHH-HHhc--cCcEEEEecccceeeecCceEEEEccCChhhccccHHHHH
Confidence 99999998876543 3322 34899999999988764 3567777766653 56666654
No 430
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.84 E-value=8.4e-21 Score=213.20 Aligned_cols=136 Identities=31% Similarity=0.507 Sum_probs=121.5
Q ss_pred EEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCce
Q 000674 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1358)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~Isi 1295 (1358)
|+++|++++|+.+..++|+|+||+|++||.+||+|++|||||||+++|.|++.|++|+|.+||.|+...+...+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 57999999996544569999999999999999999999999999999999999999999999999999888889999999
Q ss_pred ecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCccccccccCCc
Q 000674 1296 IPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSEQITYD 1351 (1358)
Q Consensus 1296 VpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~Gldt~v~e~g~ 1351 (1358)
+||+|.+|+.|+++||.... ..+.+++.++++..++.+++..+|.|+++.......
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 137 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGA 137 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCC
Confidence 99999999999999997432 245677888899999999999999999887655554
No 431
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=9.3e-21 Score=218.36 Aligned_cols=200 Identities=23% Similarity=0.359 Sum_probs=161.8
Q ss_pred CCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCCC
Q 000674 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWI 669 (1358)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g--~i~yv~Q~~~~ 669 (1358)
...+++.+++|.|+++.. +.+.++++++..-+.++++|+||+||||+++++.|+..|..|.+.+.+ +++|-.|...-
T Consensus 360 ~p~l~i~~V~f~y~p~~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd 438 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVD 438 (582)
T ss_pred CCeeEEEeeeccCCCcch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhh
Confidence 356899999999987654 799999999999999999999999999999999999999999998877 69999997421
Q ss_pred -CCC--CHHHHHhcCC-CCCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcC
Q 000674 670 -QSG--SIRDNILYGK-PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1358)
Q Consensus 670 -~~~--tv~eni~~g~-~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDe 745 (1358)
++. +.-|-..-.. ...++.|++.+...++..++..- ...+||||||-||++|.+...+|.+|+|||
T Consensus 439 ~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~----------si~~LSGGQKsrvafA~~~~~~PhlLVLDE 508 (582)
T KOG0062|consen 439 FLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQ----------SIASLSGGQKSRVAFAACTWNNPHLLVLDE 508 (582)
T ss_pred HHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhc----------cccccCCcchhHHHHHHHhcCCCcEEEecC
Confidence 222 2222222111 12678899999999998888742 246799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEE-ecChHHH
Q 000674 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQ-SGNYQEL 805 (1358)
Q Consensus 746 p~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~-~g~~~~l 805 (1358)
||++||..+-..+-+.+ +. . +..||+||||.++++. |+.+.+.+||++.. .|+.++.
T Consensus 509 PTNhLD~dsl~AL~~Al-~~-F-~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~~~y 567 (582)
T KOG0062|consen 509 PTNHLDRDSLGALAKAL-KN-F-NGGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGIDKY 567 (582)
T ss_pred CCccccHHHHHHHHHHH-Hh-c-CCcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccHHHH
Confidence 99999999987764432 11 2 3479999999999987 89999999999984 4554443
No 432
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=1.2e-20 Score=210.84 Aligned_cols=137 Identities=34% Similarity=0.537 Sum_probs=122.7
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcC
Q 000674 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1358)
Q Consensus 1214 G~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~I 1293 (1358)
|+|+++|++++|..+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|.+|+|.+||.++.+.+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 1 GEIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred CeEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 579999999999632 3599999999999999999999999999999999999999999999999999998888999999
Q ss_pred ceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCccccccccCCc
Q 000674 1294 SIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSEQITYD 1351 (1358)
Q Consensus 1294 siVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~Gldt~v~e~g~ 1351 (1358)
+++||+|.+|.+|+++|+..+. ...++++.++++.+++.++++.+|+|+++.+.....
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 138 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGG 138 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCC
Confidence 9999999999999999996432 345678889999999999999999999987655433
No 433
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.84 E-value=1.2e-20 Score=206.94 Aligned_cols=126 Identities=25% Similarity=0.409 Sum_probs=113.3
Q ss_pred EEEEEEEEEeCCCC---CCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhc
Q 000674 1216 IELRQLKIRYRPNA---PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVK 1292 (1358)
Q Consensus 1216 I~f~nVsf~Y~~~~---~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~ 1292 (1358)
|+++||+++|.+.. +++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 57999999997542 3699999999999999999999999999999999999999999999999 6
Q ss_pred CceecccccccccchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCccccccccCCcCCCC
Q 000674 1293 LSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSEQITYDYGWS 1355 (1358)
Q Consensus 1293 IsiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~Gldt~v~e~g~~n~s 1355 (1358)
|+++||+|.+|++|+++|+......++++.+++++.+++.+++..+|.|+++.+.+.+. ..|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~lS 129 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGI-NLS 129 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCC-cCC
Confidence 99999999999999999997654556778889999999999999999999998877665 554
No 434
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.83 E-value=2.9e-20 Score=210.64 Aligned_cols=179 Identities=22% Similarity=0.354 Sum_probs=138.6
Q ss_pred eeEEEeCCCCCCccceeEEEEeeC-----CeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCCC-CCCC
Q 000674 599 EGNFSWDPELAIPTLRGVNLDIKW-----AQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSW-IQSG 672 (1358)
Q Consensus 599 ~~~f~~~~~~~~~~l~~i~l~i~~-----G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g~i~yv~Q~~~-~~~~ 672 (1358)
+.-++|+.- ...+.+..|++.+ ||+++++||||-||||+.+.|+|.++|++|. ..+-+|+|=||--. -+++
T Consensus 340 ~~lv~y~~~--~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~~~~~vSyKPQyI~~~~~g 416 (591)
T COG1245 340 DTLVEYPDL--KKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-EEDLKVSYKPQYISPDYDG 416 (591)
T ss_pred ceeeecchh--eeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC-CccceEeecceeecCCCCC
Confidence 344567642 2356677776654 6789999999999999999999999999998 55568999999633 4899
Q ss_pred CHHHHHhcCCC--CCHHHHH-HHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEcCCCCC
Q 000674 673 SIRDNILYGKP--MDKARYD-KAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749 (1358)
Q Consensus 673 tv~eni~~g~~--~~~~~~~-~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~~~~illLDep~s~ 749 (1358)
||++-+.-..+ +...+|+ ++++-..|++-++ .+..+||||+.|||++|.||.+++|+||||||.+.
T Consensus 417 tV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e-----------~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~ 485 (591)
T COG1245 417 TVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLE-----------RPVDELSGGELQRVAIAAALSREADLYLLDEPSAY 485 (591)
T ss_pred cHHHHHHHhhhhhcccchhHHhhcCccchHHHHh-----------cccccCCchhHHHHHHHHHhccccCEEEecCchhh
Confidence 99998754321 4444443 4555556665544 46678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhH-h-cCCcEEEEEcCCcchhhc-cCeEEEEe
Q 000674 750 VDAHTAATLFNECVMA-A-LEKKTVILVTHQVEFLSE-VDRILVLE 792 (1358)
Q Consensus 750 lD~~~~~~i~~~~~~~-~-~~~~tvilvtH~~~~l~~-~d~i~~l~ 792 (1358)
||.+..-.+- ++++. . ..++|.++|.||+.++.. +||++|.+
T Consensus 486 LDvEqR~~va-kvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 486 LDVEQRIIVA-KVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred ccHHHHHHHH-HHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 9998765443 34433 2 357899999999999998 79999986
No 435
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.83 E-value=1.3e-20 Score=196.68 Aligned_cols=127 Identities=34% Similarity=0.526 Sum_probs=109.7
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCC-CCChHHHhhcC
Q 000674 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDIC-SMGLKDLRVKL 1293 (1358)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~-~i~l~~LRs~I 1293 (1358)
-|+++||+.+|... .||||||++|++||.|.|+||||||||||+++|.++-+|++|+|.|||.++. +.++..+|+++
T Consensus 2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 48999999999643 4999999999999999999999999999999999999999999999998874 34899999999
Q ss_pred ceeccccccccc-chhhhcC--CCC--CCC----HHHHHHHHHHcCCchHHhcCCCccc
Q 000674 1294 SIIPQEPTLFRG-SVRTNLD--PLG--LYS----DDEIWKALEKCQLKTTISSLPNKLD 1343 (1358)
Q Consensus 1294 siVpQdp~LF~G-TIR~NLd--p~~--~~s----DeeI~~AL~~a~l~~~I~~Lp~Gld 1343 (1358)
|+|+|...||+- |+-+|+. |-. .-+ .+.-.+-|+++||.|.....|..|.
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLS 138 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLS 138 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccC
Confidence 999999999976 9999984 211 112 3345677999999999999887764
No 436
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.83 E-value=3.1e-20 Score=206.24 Aligned_cols=138 Identities=35% Similarity=0.565 Sum_probs=122.7
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcC
Q 000674 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1358)
Q Consensus 1214 G~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~I 1293 (1358)
|+|+++|++++|+....++|+|+||+|++||.+||+|++|||||||+++|.|+.+|++|+|.+||.++.+++...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 56999999999964334599999999999999999999999999999999999999999999999999988888889999
Q ss_pred ceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCccccccccCCc
Q 000674 1294 SIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSEQITYD 1351 (1358)
Q Consensus 1294 siVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~Gldt~v~e~g~ 1351 (1358)
+++||+|.+|..|+++|+.... ..+++++.++++..++.+....+|.|+++.+.+...
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 139 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGR 139 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCc
Confidence 9999999999999999996332 245667889999999999999999999998766544
No 437
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.83 E-value=8.8e-21 Score=201.33 Aligned_cols=125 Identities=31% Similarity=0.476 Sum_probs=110.8
Q ss_pred EEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCce
Q 000674 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1358)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~Isi 1295 (1358)
|+|+||+++|.+ ..+++|+||+|++||.+.+||+|||||||+++.+-|++||++|+|+|||.||++++...||++|||
T Consensus 2 I~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 799999999973 459999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccccc-chhhhcC--CCC-CC----CHHHHHHHHHHcCCc--hHHhcCCCcc
Q 000674 1296 IPQEPTLFRG-SVRTNLD--PLG-LY----SDDEIWKALEKCQLK--TTISSLPNKL 1342 (1358)
Q Consensus 1296 VpQdp~LF~G-TIR~NLd--p~~-~~----sDeeI~~AL~~a~l~--~~I~~Lp~Gl 1342 (1358)
|-|.--||.- ||.+||. |-- .. -++.+.+-|+.++|. +|-.+.|.-|
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eL 136 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHEL 136 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhc
Confidence 9999999976 9999994 311 12 355678889999996 4777777644
No 438
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.83 E-value=2.6e-20 Score=207.67 Aligned_cols=140 Identities=30% Similarity=0.470 Sum_probs=122.1
Q ss_pred CcceEEEEEEEEEeCCC-CCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHh
Q 000674 1212 FKGRIELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLR 1290 (1358)
Q Consensus 1212 ~~G~I~f~nVsf~Y~~~-~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR 1290 (1358)
..|.++++|++++|+.. ..++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+....|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 45789999999999642 23599999999999999999999999999999999999999999999999999988888889
Q ss_pred hcCceecccccccccchhhhcCC-CCCCCHHHHHHHHHHcCCchHHhcCCCccccccccCCc
Q 000674 1291 VKLSIIPQEPTLFRGSVRTNLDP-LGLYSDDEIWKALEKCQLKTTISSLPNKLDSSEQITYD 1351 (1358)
Q Consensus 1291 s~IsiVpQdp~LF~GTIR~NLdp-~~~~sDeeI~~AL~~a~l~~~I~~Lp~Gldt~v~e~g~ 1351 (1358)
++++++||+|.+|.+|+++|++. ....+.+++++..+..+++++++.+|.|+++.+.+...
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~ 149 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGS 149 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCC
Confidence 99999999999999999999973 22334566777778888999999999888877665544
No 439
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.83 E-value=2e-21 Score=213.23 Aligned_cols=180 Identities=16% Similarity=0.129 Sum_probs=121.7
Q ss_pred EEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCCCC-CCCC
Q 000674 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWI-QSGS 673 (1358)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g~i~yv~Q~~~~-~~~t 673 (1358)
++++|.. +|. ...+++++++ ++++|+|||||||||++++|.-.+-...... ..++++|++|+... ++.|
T Consensus 6 l~l~nfk-~~~---~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~-~~~~i~~~~~~~~~~~~~~ 75 (212)
T cd03274 6 LVLENFK-SYA---GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKM-RQKKLSDLIHNSAGHPNLD 75 (212)
T ss_pred EEEECcc-cCC---CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHh-hhhhHHHHhcCCCCCCCCc
Confidence 4555543 444 3457888876 7999999999999999999972111100011 12468999998765 3457
Q ss_pred HHHHHhcCCCCC-HHHHHHHHHHh-------------ccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHhc---
Q 000674 674 IRDNILYGKPMD-KARYDKAIKAC-------------ALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN--- 736 (1358)
Q Consensus 674 v~eni~~g~~~~-~~~~~~~~~~~-------------~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~~--- 736 (1358)
++++..+-.... .+ .++.. +-..++..++++.+ .+...||||||||++||||++.
T Consensus 76 ~~~~~~~~~~~~~~~----~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~----~~~~~lS~G~~~r~~la~al~~~~~ 147 (212)
T cd03274 76 SCSVEVHFQEIIDKP----LLKSKGIDLDHNRFLILQGEVEQIAQMPKKSW----KNISNLSGGEKTLSSLALVFALHHY 147 (212)
T ss_pred eEEEEEEEEeCCCHH----HHHHCCcCCCCCceEEcCCcEEEeeccccccc----cchhhcCHHHHHHHHHHHHHHhccc
Confidence 777765432211 00 00000 00012223343332 3466899999999999999974
Q ss_pred -CCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhccCeEEEEeC
Q 000674 737 -DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEG 793 (1358)
Q Consensus 737 -~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~ 793 (1358)
+|++++|||||++||++..+.+.+.+.. ..++.|+|++||+.+....||++++|..
T Consensus 148 ~~p~ililDEPt~gLD~~~~~~l~~~l~~-~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 148 KPTPLYVMDEIDAALDFRNVSIVANYIKE-RTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred CCCCEEEEcCCCcCCCHHHHHHHHHHHHH-HcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 5899999999999999999988765544 4467899999999877777999999963
No 440
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=3.3e-20 Score=208.31 Aligned_cols=135 Identities=33% Similarity=0.543 Sum_probs=121.9
Q ss_pred EEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCce
Q 000674 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1358)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~Isi 1295 (1358)
++++|++++|+.+ ..+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++++.+...+|+.+++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999643 359999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccccchhhhcCCC-CCCCHHHHHHHHHHcCCchHHhcCCCccccccccCCc
Q 000674 1296 IPQEPTLFRGSVRTNLDPL-GLYSDDEIWKALEKCQLKTTISSLPNKLDSSEQITYD 1351 (1358)
Q Consensus 1296 VpQdp~LF~GTIR~NLdp~-~~~sDeeI~~AL~~a~l~~~I~~Lp~Gldt~v~e~g~ 1351 (1358)
+||+|.+|++|+++|+... ...+++++.++++.+++.+.+..+|.|+++.+.....
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 136 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGL 136 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCC
Confidence 9999999999999999633 2356778899999999999999999999998766544
No 441
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.82 E-value=9.1e-18 Score=190.19 Aligned_cols=222 Identities=15% Similarity=0.295 Sum_probs=195.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccChhhHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHH
Q 000674 946 TASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLA 1025 (1358)
Q Consensus 946 ~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~D~~~id~~l~~~l~~~~~~~~~~l~ 1025 (1358)
.+...+.....+...+.+.+..+++++++++++++.|.+||+++++|+++||+++|++.+++.+...+..++..+..+++
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~ 131 (275)
T PF00664_consen 52 LLIFLFSYIYFYLSSRISQRIRKDLRKRLFEKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIF 131 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhh
Confidence 33444444455556788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHH
Q 000674 1026 IIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVD 1105 (1358)
Q Consensus 1026 ~i~v~~~~~~~l~~~~l~~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~G~~tIRAf~~e~~f~~~~~~~~d 1105 (1358)
.+++++..+|+++++.+...+++.++..++.+..++..+...+..++..+++.|.++|+++||+|+.|+++.+++.+..+
T Consensus 132 ~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~ 211 (275)
T PF00664_consen 132 SLILLFFISWKLALILLIILPLLFLISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALE 211 (275)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHH
T ss_pred hhhcccccccccccccchhhhhhHhhhhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-hcCCccchhHHHHHHHHHHHHHHHH
Q 000674 1106 IDASLFFHTNGVMEWLILRVEALQNLTLFTAA-LFLVL-IPRGYVAPGLVGLSLSYAFTLTGTQ 1167 (1358)
Q Consensus 1106 ~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~-~~~~l-~~~g~is~g~~gl~l~ya~~l~~~l 1167 (1358)
+..+...+....+.|.....+++..+...++. +.... ...|.+++|.+..+++|...+.+|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 212 KYRKASFKYAKIQALLSSISQFISYLSIVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 99999988888888888888887777444333 33455 6789999999999999998888764
No 442
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=3.9e-20 Score=207.36 Aligned_cols=136 Identities=29% Similarity=0.446 Sum_probs=120.9
Q ss_pred EEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCce
Q 000674 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1358)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~Isi 1295 (1358)
|+++|++++|.....++|+|+||++++||.+||+|++|||||||+++|.|++.|++|+|.+||.++.+.+...+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 57999999996443359999999999999999999999999999999999999999999999999998888889999999
Q ss_pred ecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCccccccccCCc
Q 000674 1296 IPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSEQITYD 1351 (1358)
Q Consensus 1296 VpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~Gldt~v~e~g~ 1351 (1358)
+||+|.+|.+|+++|+..+. .++.+++.++++.+++.++++.+|.|+++.......
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 137 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGV 137 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCC
Confidence 99999999999999997432 345677888899999999999999999887665444
No 443
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.82 E-value=7.5e-20 Score=198.75 Aligned_cols=160 Identities=14% Similarity=0.136 Sum_probs=113.7
Q ss_pred cceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCC-----cE----EEE----cCeEEEEeCCCCCCCCCHHHHH
Q 000674 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS-----GT----VNL----YGSIAYVSQTSWIQSGSIRDNI 678 (1358)
Q Consensus 612 ~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~-----G~----i~~----~g~i~yv~Q~~~~~~~tv~eni 678 (1358)
.++++++++.+| +.+|+||||||||||+.+|...+.... |. +.- ...|.+.+|+.-+.. |
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~- 83 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N- 83 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C-
Confidence 356788888887 889999999999999999873322111 21 000 124777777654333 1
Q ss_pred hcCCCC--CHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH----hcCCCEEEEcCCCCCCCH
Q 000674 679 LYGKPM--DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV----YNDADIYLFDDPFSAVDA 752 (1358)
Q Consensus 679 ~~g~~~--~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal----~~~~~illLDep~s~lD~ 752 (1358)
... ..++.+++++. .+ ...++..+||||||||++||||+ +.+|++++||||+++||+
T Consensus 84 ---~~~~~~~~~~~~~l~~------------~~--~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~ 146 (198)
T cd03276 84 ---PLCVLSQDMARSFLTS------------NK--AAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDM 146 (198)
T ss_pred ---cCCHHHHHHHHHHhcc------------cc--ccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCH
Confidence 111 11222222222 11 12367789999999999999999 699999999999999999
Q ss_pred HHHHHHHHHHHhHhcC---CcEEEEEcCCcchhhccCeEEEEeCCe
Q 000674 753 HTAATLFNECVMAALE---KKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1358)
Q Consensus 753 ~~~~~i~~~~~~~~~~---~~tvilvtH~~~~l~~~d~i~~l~~G~ 795 (1358)
.....+.+.+.....+ ++|+|++||+++.+...|+|.+|..|+
T Consensus 147 ~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 147 VNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 9999988765554332 358999999999998899999998754
No 444
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.82 E-value=4.1e-20 Score=202.44 Aligned_cols=128 Identities=27% Similarity=0.480 Sum_probs=110.3
Q ss_pred EEEEEEEEEeCCC---CCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCC---hHHH
Q 000674 1216 IELRQLKIRYRPN---APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG---LKDL 1289 (1358)
Q Consensus 1216 I~f~nVsf~Y~~~---~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~---l~~L 1289 (1358)
|+|+||+..|... ...+|+||||+|++||..||||+||||||||++++-|+-+|++|+|.+||.||..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999752 346999999999999999999999999999999999999999999999999888776 6667
Q ss_pred hhcCceecccccccc-cchhhhcC-CCC--CCCHH----HHHHHHHHcCCchHHhcCCCccc
Q 000674 1290 RVKLSIIPQEPTLFR-GSVRTNLD-PLG--LYSDD----EIWKALEKCQLKTTISSLPNKLD 1343 (1358)
Q Consensus 1290 Rs~IsiVpQdp~LF~-GTIR~NLd-p~~--~~sDe----eI~~AL~~a~l~~~I~~Lp~Gld 1343 (1358)
|++|++|+|++.|++ -|+.+|+. |.. ..+.+ .+.+.|+.+||.|.-.+-|..|.
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLS 143 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLS 143 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcC
Confidence 899999999999998 69999995 443 23444 46688999999998887775543
No 445
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.81 E-value=6.7e-20 Score=203.15 Aligned_cols=138 Identities=17% Similarity=0.235 Sum_probs=119.1
Q ss_pred EEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCCh----HHHhh
Q 000674 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL----KDLRV 1291 (1358)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l----~~LRs 1291 (1358)
+.+.|..++|+++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+. ...|+
T Consensus 1 ~~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 1 VQVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred CeeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 3578999999765 459999999999999999999999999999999999999999999999999887653 34678
Q ss_pred cCceecccccccccchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCccccccccCCcCCCC
Q 000674 1292 KLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSEQITYDYGWS 1355 (1358)
Q Consensus 1292 ~IsiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~Gldt~v~e~g~~n~s 1355 (1358)
.++++||+|.+|+.|+++|+.....+++++.+++++.+++.+.+..+|.|+++....... +.|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~LS 142 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGI-NLS 142 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCC-cCC
Confidence 899999999999999999997544456777889999999999999999999887766544 444
No 446
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.81 E-value=7.2e-20 Score=205.79 Aligned_cols=136 Identities=35% Similarity=0.578 Sum_probs=119.8
Q ss_pred EEEEEEEEEeCCC-CCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCc
Q 000674 1216 IELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1358)
Q Consensus 1216 I~f~nVsf~Y~~~-~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~Is 1294 (1358)
|+++|++++|... ..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4789999999642 235999999999999999999999999999999999999999999999999999888888889999
Q ss_pred eecccccccccchhhhcCCC-CCCCHHHHHHHHHHcCCchHHhcCCCccccccccCCc
Q 000674 1295 IIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKALEKCQLKTTISSLPNKLDSSEQITYD 1351 (1358)
Q Consensus 1295 iVpQdp~LF~GTIR~NLdp~-~~~sDeeI~~AL~~a~l~~~I~~Lp~Gldt~v~e~g~ 1351 (1358)
++||+|.+|++|+++|+... ...+.+++.++++..++.+++..+|+|+++.......
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 138 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGS 138 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCc
Confidence 99999999999999999643 2345677888899999999999999999887655443
No 447
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.81 E-value=7.3e-20 Score=195.17 Aligned_cols=154 Identities=22% Similarity=0.211 Sum_probs=105.4
Q ss_pred eeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeE--EEEeCCCCCCCCCHHHHHhcCCCCCHHHHHH
Q 000674 614 RGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSI--AYVSQTSWIQSGSIRDNILYGKPMDKARYDK 691 (1358)
Q Consensus 614 ~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g~i--~yv~Q~~~~~~~tv~eni~~g~~~~~~~~~~ 691 (1358)
++..+...++.+.+|+||||||||+++.+|.=.+--.+-........ .+-...++-..+.|+ +.
T Consensus 13 ~~~~~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~------------ 78 (178)
T cd03239 13 RDETVVGGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVE--IT------------ 78 (178)
T ss_pred CCCEEecCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEE--EE------------
Confidence 33444444444999999999999999999853221100000000000 000011111111111 11
Q ss_pred HHHHhccHHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHh----cCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhc
Q 000674 692 AIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY----NDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767 (1358)
Q Consensus 692 ~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARal~----~~~~illLDep~s~lD~~~~~~i~~~~~~~~~ 767 (1358)
....+..+|.||.|+| ||||||||++||||+. .+|+++++|||+++||++..+.+.+.+.....
T Consensus 79 ------f~~~~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~ 146 (178)
T cd03239 79 ------FDKSYFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAK 146 (178)
T ss_pred ------EECceEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 1223678899999987 9999999999999985 79999999999999999999998876555444
Q ss_pred CCcEEEEEcCCcchhhccCeEEEEeC
Q 000674 768 EKKTVILVTHQVEFLSEVDRILVLEG 793 (1358)
Q Consensus 768 ~~~tvilvtH~~~~l~~~d~i~~l~~ 793 (1358)
+|+|+|++||+.+.+..+|+++.+++
T Consensus 147 ~g~tiIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 147 HTSQFIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred CCCEEEEEECCHHHHhhCCeEEEEEE
Confidence 57899999999998888999999864
No 448
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=7.3e-20 Score=193.53 Aligned_cols=121 Identities=32% Similarity=0.532 Sum_probs=106.8
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCC---hHHHhh
Q 000674 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG---LKDLRV 1291 (1358)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~---l~~LRs 1291 (1358)
.|+++||+.+|+. ...+|+||||+|++||.|||+|+||||||||+++|-|+.+|++|+|.++|.+|.+++ ++++|+
T Consensus 3 ~i~~~nl~k~yp~-~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPG-GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCC-CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 5899999999974 456999999999999999999999999999999999999999999999999999998 778899
Q ss_pred cCceeccccccccc-chhhhcC------------CCCCCCHH---HHHHHHHHcCCchHHh
Q 000674 1292 KLSIIPQEPTLFRG-SVRTNLD------------PLGLYSDD---EIWKALEKCQLKTTIS 1336 (1358)
Q Consensus 1292 ~IsiVpQdp~LF~G-TIR~NLd------------p~~~~sDe---eI~~AL~~a~l~~~I~ 1336 (1358)
++|+|+|++-|-.. |+-+|+- -|+-++.+ +..+||+++++.|+.-
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~ 142 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY 142 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH
Confidence 99999999999876 8999972 13344443 5788999999988764
No 449
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.80 E-value=8.3e-20 Score=202.13 Aligned_cols=127 Identities=25% Similarity=0.431 Sum_probs=107.8
Q ss_pred EEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChH---HHhhc
Q 000674 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK---DLRVK 1292 (1358)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~---~LRs~ 1292 (1358)
|+++|++++|+++..++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+.+.+.. .+|++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999964434599999999999999999999999999999999999999999999999999877643 47889
Q ss_pred Cceeccccccccc-chhhhcCCC----CC---CCHHHHHHHHHHcCCchHHhcCCCcc
Q 000674 1293 LSIIPQEPTLFRG-SVRTNLDPL----GL---YSDDEIWKALEKCQLKTTISSLPNKL 1342 (1358)
Q Consensus 1293 IsiVpQdp~LF~G-TIR~NLdp~----~~---~sDeeI~~AL~~a~l~~~I~~Lp~Gl 1342 (1358)
++++||+|.+|.. |+++|+... +. ..++++.++++..++.++....|..|
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 139 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQL 139 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhC
Confidence 9999999999874 999999521 11 13457889999999988877666543
No 450
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.80 E-value=5.7e-19 Score=180.99 Aligned_cols=200 Identities=23% Similarity=0.366 Sum_probs=156.1
Q ss_pred CCCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe-----------
Q 000674 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS----------- 659 (1358)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g~----------- 659 (1358)
.+.+|++.+..|+|+.. .|++-|+|++++.|....+||.|||||||||+++.|-.-.-.|.|.+.|+
T Consensus 10 ~~~aievsgl~f~y~~~--dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~S 87 (291)
T KOG2355|consen 10 SDFAIEVSGLQFKYKVS--DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESS 87 (291)
T ss_pred ccceEEEeccEEecccC--CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcccccccccc
Confidence 46789999999999864 48999999999999999999999999999999999987666788887663
Q ss_pred --EEEEeCC----------CCCC-CCCHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCChHHH
Q 000674 660 --IAYVSQT----------SWIQ-SGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1358)
Q Consensus 660 --i~yv~Q~----------~~~~-~~tv~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 725 (1358)
..|..-+ --+| +.++ +..+||-. .+.+|-++.++...+ |+. =+...+|-|||
T Consensus 88 gdl~YLGgeW~~~~~~agevplq~D~sa-e~mifgV~g~dp~Rre~LI~iLDI--dl~-----------WRmHkvSDGqr 153 (291)
T KOG2355|consen 88 GDLSYLGGEWSKTVGIAGEVPLQGDISA-EHMIFGVGGDDPERREKLIDILDI--DLR-----------WRMHKVSDGQR 153 (291)
T ss_pred CceeEecccccccccccccccccccccH-HHHHhhccCCChhHhhhhhhheec--cce-----------EEEeeccccch
Confidence 3443321 1122 2243 44455543 345666666654322 222 34578999999
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHh-cCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecChH
Q 000674 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1358)
Q Consensus 726 qRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1358)
+||.|+..|.+.=+++||||.|-.||.-....+.+.+.... .+|.|+|.+||-.+-+.. ..+++.|++|+++..-+|+
T Consensus 154 RRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~ 233 (291)
T KOG2355|consen 154 RRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQ 233 (291)
T ss_pred hhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccc
Confidence 99999999999999999999999999999998887665443 468999999999988876 8999999999999866665
Q ss_pred HHH
Q 000674 804 ELL 806 (1358)
Q Consensus 804 ~l~ 806 (1358)
++.
T Consensus 234 ~i~ 236 (291)
T KOG2355|consen 234 KIK 236 (291)
T ss_pred hhh
Confidence 554
No 451
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.80 E-value=8e-20 Score=189.65 Aligned_cols=122 Identities=27% Similarity=0.450 Sum_probs=108.1
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCC-----CEEEEcCEeCCC--CCh
Q 000674 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAG-----GSILIDGVDICS--MGL 1286 (1358)
Q Consensus 1214 G~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~-----G~I~IDGvDI~~--i~l 1286 (1358)
..++++|+++.|.. ..+|+|||++|++++.+|++|||||||||++++|-|+.|..+ |+|.+||.||.+ ++.
T Consensus 6 ~~~~~~~l~~yYg~--~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYYGD--KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEECc--hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 36899999999964 359999999999999999999999999999999999999976 999999999987 579
Q ss_pred HHHhhcCceecccccccccchhhhcCCC----CC---CCHHHHHHHHHHcCCchHHhc
Q 000674 1287 KDLRVKLSIIPQEPTLFRGSVRTNLDPL----GL---YSDDEIWKALEKCQLKTTISS 1337 (1358)
Q Consensus 1287 ~~LRs~IsiVpQdp~LF~GTIR~NLdp~----~~---~sDeeI~~AL~~a~l~~~I~~ 1337 (1358)
..||+++|+|.|.|.-|..||+||+... +. .=||-+.++|++|.|+|-|..
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD 141 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD 141 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH
Confidence 9999999999999999999999999532 11 125567889999999998864
No 452
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.80 E-value=1.2e-18 Score=201.86 Aligned_cols=205 Identities=21% Similarity=0.344 Sum_probs=165.0
Q ss_pred CCcEEEEeeEEEeCCCCCCccceeEEEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000674 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1358)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~i~G~~GsGKStLl~~ilG~~~~~~G~i~~~g------------- 658 (1358)
+..++++|.+..= +.+.+.++||||+++.||+++|.|-.|-|-+-|+.+|.|+.++.+|+|.++|
T Consensus 255 ~~vL~V~~L~v~~--~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r 332 (501)
T COG3845 255 EVVLEVEDLSVKD--RRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERR 332 (501)
T ss_pred CeEEEEeeeEeec--CCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHH
Confidence 4557777777643 3335689999999999999999999999999999999999999999999987
Q ss_pred --eEEEEeCCC----CCCCCCHHHHHhcCCCC----------CHHHHHHHHHHhccHHHHhcCCCCCCccccCCCCCCCh
Q 000674 659 --SIAYVSQTS----WIQSGSIRDNILYGKPM----------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1358)
Q Consensus 659 --~i~yv~Q~~----~~~~~tv~eni~~g~~~----------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSG 722 (1358)
.+||||.+. .....|+.||+.++.-. +...+.+..+ .+-+.++--+.+.. .+..+|||
T Consensus 333 ~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~--~li~~fdVr~~~~~----~~a~~LSG 406 (501)
T COG3845 333 RLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR--ELIEEFDVRAPSPD----APARSLSG 406 (501)
T ss_pred hcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHH--HHHHHcCccCCCCC----cchhhcCC
Confidence 279999985 46789999999876422 2222222211 22222222223322 45678999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhHhcCCcEEEEEcCCcchhhc-cCeEEEEeCCeEEEecC
Q 000674 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1358)
Q Consensus 723 GQkqRv~LARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1358)
|++||+-+||-+..+|++++...||-|||....+.|.+.++....+|+.|++++-+++++-. ||||.||.+|+++...+
T Consensus 407 GNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~ 486 (501)
T COG3845 407 GNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVP 486 (501)
T ss_pred cceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecccc
Confidence 99999999999999999999999999999999999999998888899999999999998755 99999999999987666
Q ss_pred hHH
Q 000674 802 YQE 804 (1358)
Q Consensus 802 ~~~ 804 (1358)
+++
T Consensus 487 ~~~ 489 (501)
T COG3845 487 PEE 489 (501)
T ss_pred ccc
Confidence 554
No 453
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.79 E-value=2.9e-19 Score=204.16 Aligned_cols=126 Identities=26% Similarity=0.435 Sum_probs=113.0
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCc
Q 000674 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1358)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~Is 1294 (1358)
.|+++||+.+|.+.. ||+|||++|+.||.+++||||||||||++++|.|+.+|++|+|.|||.|+++++.++ +.|+
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 699999999997533 999999999999999999999999999999999999999999999999999999987 8899
Q ss_pred eeccccccccc-chhhhcC-CCCC------CCHHHHHHHHHHcCCchHHhcCCCcccc
Q 000674 1295 IIPQEPTLFRG-SVRTNLD-PLGL------YSDDEIWKALEKCQLKTTISSLPNKLDS 1344 (1358)
Q Consensus 1295 iVpQdp~LF~G-TIR~NLd-p~~~------~sDeeI~~AL~~a~l~~~I~~Lp~Gldt 1344 (1358)
+|+|+..||.- ||++||. |... --++++.++++..++.+...+.|..|..
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSG 136 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSG 136 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCCh
Confidence 99999999976 9999995 2211 1266788999999999999999987653
No 454
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=2.4e-19 Score=205.94 Aligned_cols=128 Identities=23% Similarity=0.413 Sum_probs=110.2
Q ss_pred eEEEEEEEEEeCCC-CCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcC
Q 000674 1215 RIELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1358)
Q Consensus 1215 ~I~f~nVsf~Y~~~-~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~I 1293 (1358)
.++++||+++|+.. ..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999642 24599999999999999999999999999999999999999999999999999998888999999
Q ss_pred ceeccccc--ccccchhhhcCCCC---CCC----HHHHHHHHHHcCCchHHhcCCCcc
Q 000674 1294 SIIPQEPT--LFRGSVRTNLDPLG---LYS----DDEIWKALEKCQLKTTISSLPNKL 1342 (1358)
Q Consensus 1294 siVpQdp~--LF~GTIR~NLdp~~---~~s----DeeI~~AL~~a~l~~~I~~Lp~Gl 1342 (1358)
+++||+|. ++..|+++||.... ..+ ++.+.++++.+++.++....|..|
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~L 141 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARL 141 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccC
Confidence 99999983 56779999996211 122 356889999999998887776544
No 455
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=2.1e-19 Score=205.75 Aligned_cols=127 Identities=24% Similarity=0.411 Sum_probs=110.6
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCc
Q 000674 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1358)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~Is 1294 (1358)
-|+++||+++|+.+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+.+...+|++++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 48999999999633 35999999999999999999999999999999999999999999999999999988889999999
Q ss_pred eecccc--cccccchhhhcCCCC---CCC----HHHHHHHHHHcCCchHHhcCCCcc
Q 000674 1295 IIPQEP--TLFRGSVRTNLDPLG---LYS----DDEIWKALEKCQLKTTISSLPNKL 1342 (1358)
Q Consensus 1295 iVpQdp--~LF~GTIR~NLdp~~---~~s----DeeI~~AL~~a~l~~~I~~Lp~Gl 1342 (1358)
++||+| .+|..|+++|+.... ..+ ++++.++++.+++.++..+.|..|
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~L 139 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHL 139 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhC
Confidence 999999 688899999996211 122 356789999999988877777544
No 456
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.79 E-value=1e-16 Score=187.62 Aligned_cols=259 Identities=18% Similarity=0.154 Sum_probs=166.1
Q ss_pred HHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----HhcCCccchhHH
Q 000674 1079 ETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF-LV----LIPRGYVAPGLV 1153 (1358)
Q Consensus 1079 Etl~G~~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~-~~----l~~~g~is~g~~ 1153 (1358)
+-..+...|--|+.++.....-++..++.............|+.+..+++..+..++..+. +. .-..+.+++..+
T Consensus 270 rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL 349 (659)
T KOG0060|consen 270 RLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAEL 349 (659)
T ss_pred eeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcCHHHH
Confidence 3455666777777665554444444444444444445556677766665543221111100 00 012356676655
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCC-----------------CCCCCCc-CCCCCCCCCC
Q 000674 1154 GLSLSYAF----TLTGTQVFLSRWYCYLANYIISVERIKQFMHIP-----------------PEPPAIV-EDKRPPSSWP 1211 (1358)
Q Consensus 1154 gl~l~ya~----~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~-----------------~E~~~~~-~~~~~~~~wp 1211 (1358)
---+++.. .+.+.+..++....++..--.-..||-|+.+.- .|..+.. .....++.||
T Consensus 350 ~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~ 429 (659)
T KOG0060|consen 350 SGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEP 429 (659)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCccccc
Confidence 43333322 222233333333334444445567888876421 0111100 1111256788
Q ss_pred CcceEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhh
Q 000674 1212 FKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291 (1358)
Q Consensus 1212 ~~G~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs 1291 (1358)
....|+|++|++.=+.+.+...+|+||+|+.|+.+-|+|+||||||||++.|.++++..+|+|.--...-. +
T Consensus 430 ~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~--------~ 501 (659)
T KOG0060|consen 430 ADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP--------K 501 (659)
T ss_pred ccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC--------C
Confidence 88899999999998766666677799999999999999999999999999999999999999975321100 4
Q ss_pred cCceecccccccccchhhhcC-CC-------CCCCHHHHHHHHHHcCCchHHhcCCCcccccc
Q 000674 1292 KLSIIPQEPTLFRGSVRTNLD-PL-------GLYSDDEIWKALEKCQLKTTISSLPNKLDSSE 1346 (1358)
Q Consensus 1292 ~IsiVpQdp~LF~GTIR~NLd-p~-------~~~sDeeI~~AL~~a~l~~~I~~Lp~Gldt~v 1346 (1358)
.+=++||-|++=.||+|+-+- |. +..+|++|.+.|+.+++.+.+.. .+|+|+++
T Consensus 502 ~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r-~ggld~~~ 563 (659)
T KOG0060|consen 502 DLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLER-EGGLDQQV 563 (659)
T ss_pred ceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHH-hCCCCchh
Confidence 588999999999999999982 42 13689999999999999887665 58999776
No 457
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.79 E-value=3e-19 Score=196.65 Aligned_cols=121 Identities=33% Similarity=0.540 Sum_probs=104.9
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCc
Q 000674 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1358)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~Is 1294 (1358)
.++.+|++|+|. ..++|+||||+|++||.++|+||+|||||||+++|.|+..|.+|+|++||.||.+++..++-++++
T Consensus 2 ~L~~~~ls~~y~--~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYG--GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEEC--CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 478999999997 346999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccc-cccchhhhcC----CC----CCCC--HH-HHHHHHHHcCCchHHhc
Q 000674 1295 IIPQEPTL-FRGSVRTNLD----PL----GLYS--DD-EIWKALEKCQLKTTISS 1337 (1358)
Q Consensus 1295 iVpQdp~L-F~GTIR~NLd----p~----~~~s--De-eI~~AL~~a~l~~~I~~ 1337 (1358)
+|||++.. |.-|++|=+- |+ ...+ |+ .+.+||+.+++.++..+
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r 134 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR 134 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC
Confidence 99999754 4558888762 32 2223 33 47889999999998654
No 458
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.79 E-value=2.9e-19 Score=189.56 Aligned_cols=124 Identities=29% Similarity=0.516 Sum_probs=107.0
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChH---HHhh
Q 000674 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK---DLRV 1291 (1358)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~---~LRs 1291 (1358)
.|++++|+++|.. ..||+||||+|++||..||+|+||||||||++++.|+..|++|+|.|||.||.+++-+ .+|+
T Consensus 8 ~I~vr~v~~~fG~--~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 8 LIEVRGVTKSFGD--RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred eEEEeeeeeecCC--EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 6999999999953 4599999999999999999999999999999999999999999999999999999864 5699
Q ss_pred cCceeccccccccc-chhhhcC-CCCCC---CHHHHH----HHHHHcCCchH-HhcCCC
Q 000674 1292 KLSIIPQEPTLFRG-SVRTNLD-PLGLY---SDDEIW----KALEKCQLKTT-ISSLPN 1340 (1358)
Q Consensus 1292 ~IsiVpQdp~LF~G-TIR~NLd-p~~~~---sDeeI~----~AL~~a~l~~~-I~~Lp~ 1340 (1358)
++|++.|..-||+. ||+||+. |..+| +++++. .-|+.+||..- -...|.
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~Ps 144 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPS 144 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCch
Confidence 99999999999988 9999995 55444 455543 46788999877 344453
No 459
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=3.7e-19 Score=204.21 Aligned_cols=129 Identities=25% Similarity=0.411 Sum_probs=111.5
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCc
Q 000674 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1358)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~Is 1294 (1358)
.++++||+++|+...+++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+.+...+|++|+
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 48999999999644446999999999999999999999999999999999999999999999999999988888999999
Q ss_pred eecccc--cccccchhhhcCCCC---CCC----HHHHHHHHHHcCCchHHhcCCCccc
Q 000674 1295 IIPQEP--TLFRGSVRTNLDPLG---LYS----DDEIWKALEKCQLKTTISSLPNKLD 1343 (1358)
Q Consensus 1295 iVpQdp--~LF~GTIR~NLdp~~---~~s----DeeI~~AL~~a~l~~~I~~Lp~Gld 1343 (1358)
++||+| .+++.|+++||.... ..+ ++++.++++.+++.+++...|..|.
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS 142 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLS 142 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCC
Confidence 999999 466789999995311 123 3457889999999998888776543
No 460
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=6.2e-19 Score=198.42 Aligned_cols=123 Identities=33% Similarity=0.501 Sum_probs=106.8
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCc
Q 000674 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1358)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~Is 1294 (1358)
.++++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+..++...+|++++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 5899999999953 35999999999999999999999999999999999999999999999999999888888999999
Q ss_pred eecccccccccchhhhcCCCC---CCCHHHHHHHHHHcCCc-hHHhcCC
Q 000674 1295 IIPQEPTLFRGSVRTNLDPLG---LYSDDEIWKALEKCQLK-TTISSLP 1339 (1358)
Q Consensus 1295 iVpQdp~LF~GTIR~NLdp~~---~~sDeeI~~AL~~a~l~-~~I~~Lp 1339 (1358)
++||+|.+|++|+++|+.... ...++++.++++..++. +.....|
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 129 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDV 129 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCc
Confidence 999999999999999996321 12356788899999985 4444433
No 461
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.78 E-value=4.7e-19 Score=207.35 Aligned_cols=127 Identities=26% Similarity=0.434 Sum_probs=107.9
Q ss_pred EEEEEEEEEeCCC--CCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHH---Hh
Q 000674 1216 IELRQLKIRYRPN--APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---LR 1290 (1358)
Q Consensus 1216 I~f~nVsf~Y~~~--~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~---LR 1290 (1358)
|+++||+++|+.+ ..++|+||||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.||.+++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 236999999999999999999999999999999999999999999999999999987654 58
Q ss_pred hcCceecccccccc-cchhhhcC-CC--CCCC----HHHHHHHHHHcCCchHHhcCCCcc
Q 000674 1291 VKLSIIPQEPTLFR-GSVRTNLD-PL--GLYS----DDEIWKALEKCQLKTTISSLPNKL 1342 (1358)
Q Consensus 1291 s~IsiVpQdp~LF~-GTIR~NLd-p~--~~~s----DeeI~~AL~~a~l~~~I~~Lp~Gl 1342 (1358)
++|++|||++.+|. .|+++|+. |. ...+ ++++.++|+.+++.+.....|..|
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~L 141 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNL 141 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhC
Confidence 89999999999995 69999994 21 1122 345788999999998877766544
No 462
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.78 E-value=4e-19 Score=197.04 Aligned_cols=125 Identities=28% Similarity=0.441 Sum_probs=104.7
Q ss_pred EEEEEEEEEeCCCC--CCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHH----H
Q 000674 1216 IELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD----L 1289 (1358)
Q Consensus 1216 I~f~nVsf~Y~~~~--~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~----L 1289 (1358)
++++||+++|.++. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+.+.+. .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999996431 35999999999999999999999999999999999999999999999999999887543 4
Q ss_pred hhcCceeccccccccc-chhhhcCCC---CCC----CHHHHHHHHHHcCCchHHhcCCC
Q 000674 1290 RVKLSIIPQEPTLFRG-SVRTNLDPL---GLY----SDDEIWKALEKCQLKTTISSLPN 1340 (1358)
Q Consensus 1290 Rs~IsiVpQdp~LF~G-TIR~NLdp~---~~~----sDeeI~~AL~~a~l~~~I~~Lp~ 1340 (1358)
|++++++||+|.+|.+ |+++|+... ... .++++.++++..++.+.....|.
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 139 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPS 139 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChh
Confidence 6789999999999987 999998521 111 23568889999999877655544
No 463
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=7.9e-19 Score=200.96 Aligned_cols=128 Identities=27% Similarity=0.442 Sum_probs=108.8
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCc
Q 000674 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1358)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~Is 1294 (1358)
.|+++|++++|+++..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+...+|++++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 58999999999644456999999999999999999999999999999999999999999999999999888888999999
Q ss_pred eecccc--cccccchhhhcCCC---CCCCHH----HHHHHHHHcCCchHHhcCCCcc
Q 000674 1295 IIPQEP--TLFRGSVRTNLDPL---GLYSDD----EIWKALEKCQLKTTISSLPNKL 1342 (1358)
Q Consensus 1295 iVpQdp--~LF~GTIR~NLdp~---~~~sDe----eI~~AL~~a~l~~~I~~Lp~Gl 1342 (1358)
++||+| .++..|+++|+... ...+++ .+.++++..++.++....|..|
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 143 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNL 143 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccC
Confidence 999998 45577999999531 112333 3667889999988877766544
No 464
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=4.3e-19 Score=198.75 Aligned_cols=126 Identities=25% Similarity=0.401 Sum_probs=105.9
Q ss_pred eEEEEEEEEEeCCCC--CCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHH---H
Q 000674 1215 RIELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---L 1289 (1358)
Q Consensus 1215 ~I~f~nVsf~Y~~~~--~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~---L 1289 (1358)
.++++||+++|+++. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+++.+. +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999996432 36999999999999999999999999999999999999999999999999999988654 3
Q ss_pred h-hcCceeccccccccc-chhhhcCC---CCCC----CHHHHHHHHHHcCCchHHhcCCC
Q 000674 1290 R-VKLSIIPQEPTLFRG-SVRTNLDP---LGLY----SDDEIWKALEKCQLKTTISSLPN 1340 (1358)
Q Consensus 1290 R-s~IsiVpQdp~LF~G-TIR~NLdp---~~~~----sDeeI~~AL~~a~l~~~I~~Lp~ 1340 (1358)
| ++++++||+|.+|.+ |+++|+.. +... .++++.++++..++.+.....|.
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 144 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPS 144 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChh
Confidence 3 679999999999976 99999852 1111 23467899999999877655544
No 465
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=7.6e-19 Score=204.69 Aligned_cols=124 Identities=22% Similarity=0.323 Sum_probs=101.7
Q ss_pred ceEEEEEEEEEeCCC---CCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCC------
Q 000674 1214 GRIELRQLKIRYRPN---APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM------ 1284 (1358)
Q Consensus 1214 G~I~f~nVsf~Y~~~---~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i------ 1284 (1358)
..|+++|++++|+.. ..++|+||||+|++||++||+|++|||||||+++|.|+++|++|+|.+||+|+.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 369999999999643 23599999999999999999999999999999999999999999999999999763
Q ss_pred ----------ChHHHhhcCceecccc--cccccchhhhcCCC--C-CCCHH----HHHHHHHHcCCc-hHHhc
Q 000674 1285 ----------GLKDLRVKLSIIPQEP--TLFRGSVRTNLDPL--G-LYSDD----EIWKALEKCQLK-TTISS 1337 (1358)
Q Consensus 1285 ----------~l~~LRs~IsiVpQdp--~LF~GTIR~NLdp~--~-~~sDe----eI~~AL~~a~l~-~~I~~ 1337 (1358)
....+|+++++|||+| .+|++|+++|+... . ..+++ .+.++++..++. ++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcC
Confidence 4567899999999999 69999999999421 1 12333 345667777775 34443
No 466
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.78 E-value=4.6e-19 Score=194.55 Aligned_cols=122 Identities=25% Similarity=0.384 Sum_probs=104.0
Q ss_pred EEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCcee
Q 000674 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSII 1296 (1358)
Q Consensus 1217 ~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~IsiV 1296 (1358)
+++|++++|+.+ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.. ...|++++++
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 468999999642 359999999999999999999999999999999999999999999999999865 4677899999
Q ss_pred cccc--cccccchhhhcCCCC---CCCHHHHHHHHHHcCCchHHhcCCCcc
Q 000674 1297 PQEP--TLFRGSVRTNLDPLG---LYSDDEIWKALEKCQLKTTISSLPNKL 1342 (1358)
Q Consensus 1297 pQdp--~LF~GTIR~NLdp~~---~~sDeeI~~AL~~a~l~~~I~~Lp~Gl 1342 (1358)
||+| .+|..|+++|+.... ...++++.++++..++.++....|..|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 127 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSL 127 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhC
Confidence 9998 467899999996321 123467899999999998877777654
No 467
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.78 E-value=5e-19 Score=197.47 Aligned_cols=121 Identities=33% Similarity=0.552 Sum_probs=104.9
Q ss_pred EEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhccc-----CCCCCEEEEcCEeCCCCC--hHH
Q 000674 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLV-----EPAGGSILIDGVDICSMG--LKD 1288 (1358)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~-----e~~~G~I~IDGvDI~~i~--l~~ 1288 (1358)
|+++||+++|+. .++|+|+||+|++||++||+|++|||||||+++|.|++ +|++|+|.+||.|+.+++ ...
T Consensus 1 i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGD--KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 578999999964 35999999999999999999999999999999999999 999999999999998887 677
Q ss_pred HhhcCceecccccccccchhhhcCCC----CCC----CHHHHHHHHHHcCCchHHhcC
Q 000674 1289 LRVKLSIIPQEPTLFRGSVRTNLDPL----GLY----SDDEIWKALEKCQLKTTISSL 1338 (1358)
Q Consensus 1289 LRs~IsiVpQdp~LF~GTIR~NLdp~----~~~----sDeeI~~AL~~a~l~~~I~~L 1338 (1358)
+|++++++||+|.+|..|+++|+... +.. .++++.++++..++.+.....
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 136 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDR 136 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhcc
Confidence 89999999999999988999999531 111 235678899999998776554
No 468
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.78 E-value=9.5e-16 Score=173.64 Aligned_cols=269 Identities=20% Similarity=0.214 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000674 280 IFIAICALLRTIAVVVGPLLLYAFVNYSNRGEEN-LQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVY 358 (1358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~-~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~~~iy 358 (1358)
++..++.++..++..+.|+++..+++...+...+ ....+.++..+++..++.......+.+...+.+.+++..+...+|
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLF 81 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888888999999999987554333 344555555555555566666666666688999999999999999
Q ss_pred HHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHH
Q 000674 359 QKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWS-LALQLFLAIGVLFGVVGL-GALPGLVLFLICGLLNVP 436 (1358)
Q Consensus 359 ~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~~~~~w~-~plqi~~~~~~L~~~lG~-~~l~gl~v~~~~~~l~~~ 436 (1358)
+|.++.+....++.++|+++|.++.|++++.+........+. ..+.++.++++++. ++| .+++.++++.+..++...
T Consensus 82 ~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~l~~l~~~~~~~~~~~~ 160 (275)
T PF00664_consen 82 EKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFF-ISWKLALILLIILPLLFLISFI 160 (275)
T ss_dssp HHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcccc-cccccccccchhhhhhHhhhhh
Confidence 999999877566788999999999999999987765444333 33444444444433 343 333444455555667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 000674 437 FAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVI-YWMSPTIIS 515 (1358)
Q Consensus 437 ~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~-~~~~p~~v~ 515 (1358)
+.+..++..++..+..+++.+.++|.++|+|+||.|++|+.+.++.++.+++..+..++.....+..... .........
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (275)
T PF00664_consen 161 FSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIV 240 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999888877655544443333332222 222222222
Q ss_pred HHHHHHHHH-hCCCCCCHHHHHHHHHHHHHHHHHH
Q 000674 516 SVIFLGCAL-TGSAPLNASTIFTVLATLRSMGEPV 549 (1358)
Q Consensus 516 ~~~f~~~~l-~~~~~Lt~~~~Ft~l~lf~~l~~pl 549 (1358)
.+.+.+..+ ..++.++++.+++.+.+++.+..|+
T Consensus 241 ~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 241 LILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 223333334 4558999999999999999999886
No 469
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=4.8e-19 Score=199.97 Aligned_cols=120 Identities=20% Similarity=0.326 Sum_probs=104.7
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccC---CCCCEEEEcCEeCCCCChHHHhh
Q 000674 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE---PAGGSILIDGVDICSMGLKDLRV 1291 (1358)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e---~~~G~I~IDGvDI~~i~l~~LRs 1291 (1358)
.|+++|++++|+. .++|+|+||+|++||.+||+|++|||||||+++|.|+++ |++|+|.+||.|+.+.+...+|+
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 4789999999963 359999999999999999999999999999999999985 69999999999999998888999
Q ss_pred cCceecccccccccchhhhcCCCC---C------CCHHHHHHHHHHcCCchHHh
Q 000674 1292 KLSIIPQEPTLFRGSVRTNLDPLG---L------YSDDEIWKALEKCQLKTTIS 1336 (1358)
Q Consensus 1292 ~IsiVpQdp~LF~GTIR~NLdp~~---~------~sDeeI~~AL~~a~l~~~I~ 1336 (1358)
+++++||+|.+|..|+++|+.... . ..++++.++++.+++.+++.
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 133 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK 133 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhh
Confidence 999999999999999999995321 1 12346788999999976654
No 470
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.78 E-value=3.3e-19 Score=177.64 Aligned_cols=114 Identities=25% Similarity=0.469 Sum_probs=100.9
Q ss_pred EEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCceecccccc
Q 000674 1223 IRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTL 1302 (1358)
Q Consensus 1223 f~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~IsiVpQdp~L 1302 (1358)
.+|.....++|+|+||++++||.++|.||||||||||++.+.-+..|++|.++..|.|+++++.+.+|++++|+-|.|.|
T Consensus 9 ~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paL 88 (223)
T COG4619 9 VGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPAL 88 (223)
T ss_pred HHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccc
Confidence 35766666799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhcC-CCC----CCCHHHHHHHHHHcCCchHHh
Q 000674 1303 FRGSVRTNLD-PLG----LYSDDEIWKALEKCQLKTTIS 1336 (1358)
Q Consensus 1303 F~GTIR~NLd-p~~----~~sDeeI~~AL~~a~l~~~I~ 1336 (1358)
|.|||.+|+- |+. ..+.+.-.+-|+++++.+.+-
T Consensus 89 fg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L 127 (223)
T COG4619 89 FGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSIL 127 (223)
T ss_pred cccchhhccccchHHhccCCChHHHHHHHHHcCCchhhh
Confidence 9999999983 542 234455667788888887763
No 471
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=5.7e-19 Score=198.08 Aligned_cols=124 Identities=31% Similarity=0.487 Sum_probs=105.0
Q ss_pred EEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCCh---HHHhhc
Q 000674 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL---KDLRVK 1292 (1358)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l---~~LRs~ 1292 (1358)
|+++|++++|.. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+.+. ..+|++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 478999999953 359999999999999999999999999999999999999999999999999988764 567899
Q ss_pred Cceeccccccccc-chhhhcCCC----CCCC----HHHHHHHHHHcCCchHHhcCCCc
Q 000674 1293 LSIIPQEPTLFRG-SVRTNLDPL----GLYS----DDEIWKALEKCQLKTTISSLPNK 1341 (1358)
Q Consensus 1293 IsiVpQdp~LF~G-TIR~NLdp~----~~~s----DeeI~~AL~~a~l~~~I~~Lp~G 1341 (1358)
+++|||+|.+|.+ |+++|+... ...+ ++++.++++..++.++....|..
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 136 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAE 136 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhh
Confidence 9999999999987 999999521 1122 34577889999998776555543
No 472
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.78 E-value=4.6e-19 Score=195.94 Aligned_cols=126 Identities=28% Similarity=0.394 Sum_probs=106.1
Q ss_pred EEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCCh---HHHhhc
Q 000674 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL---KDLRVK 1292 (1358)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l---~~LRs~ 1292 (1358)
++++|++++|+.+ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+.+.+. ...|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4789999999643 459999999999999999999999999999999999999999999999999988764 357889
Q ss_pred Cceeccccccccc-chhhhcCCC---CCC----CHHHHHHHHHHcCCchHHhcCCCcc
Q 000674 1293 LSIIPQEPTLFRG-SVRTNLDPL---GLY----SDDEIWKALEKCQLKTTISSLPNKL 1342 (1358)
Q Consensus 1293 IsiVpQdp~LF~G-TIR~NLdp~---~~~----sDeeI~~AL~~a~l~~~I~~Lp~Gl 1342 (1358)
+++|||+|.+|.+ |+++|+... ... .++++.++++..++.+.....|..|
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 137 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAEL 137 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhc
Confidence 9999999999985 999999521 111 2356788999999987766655443
No 473
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=6.2e-19 Score=203.19 Aligned_cols=125 Identities=31% Similarity=0.509 Sum_probs=104.1
Q ss_pred eEEEEEEEEEeCCCC---CCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCC--hHHH
Q 000674 1215 RIELRQLKIRYRPNA---PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG--LKDL 1289 (1358)
Q Consensus 1215 ~I~f~nVsf~Y~~~~---~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~--l~~L 1289 (1358)
.|+++||+++|++.. .++|+||||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+++.+ ...+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 389999999996432 36999999999999999999999999999999999999999999999999998754 4678
Q ss_pred hhcCceecccc--cccccchhhhcCCCC---CCCH----HHHHHHHHHcCCc--hHHhcCC
Q 000674 1290 RVKLSIIPQEP--TLFRGSVRTNLDPLG---LYSD----DEIWKALEKCQLK--TTISSLP 1339 (1358)
Q Consensus 1290 Rs~IsiVpQdp--~LF~GTIR~NLdp~~---~~sD----eeI~~AL~~a~l~--~~I~~Lp 1339 (1358)
|+++++|||+| .+|..|+++|+.... ..++ +++.++++.+++. ++....|
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 142 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSP 142 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCc
Confidence 99999999998 578999999995211 1233 3578899999996 4444333
No 474
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.78 E-value=6.1e-19 Score=195.80 Aligned_cols=123 Identities=24% Similarity=0.364 Sum_probs=102.6
Q ss_pred EEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCce
Q 000674 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1358)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~Isi 1295 (1358)
|+++||+++|.++..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.. ..+|+++++
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEEE
Confidence 5799999999643245999999999999999999999999999999999999999999999999998753 677889999
Q ss_pred eccccccc-ccchhhhcCCCC---CCC----HHHHHHHHHHcCCchHHhcCC
Q 000674 1296 IPQEPTLF-RGSVRTNLDPLG---LYS----DDEIWKALEKCQLKTTISSLP 1339 (1358)
Q Consensus 1296 VpQdp~LF-~GTIR~NLdp~~---~~s----DeeI~~AL~~a~l~~~I~~Lp 1339 (1358)
+||+|.+| ..|+++|+.... ..+ ++++.++++..++.+.....+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 131 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRA 131 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChh
Confidence 99999999 579999984211 112 346788899999876654433
No 475
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.77 E-value=7e-19 Score=195.08 Aligned_cols=124 Identities=23% Similarity=0.380 Sum_probs=104.4
Q ss_pred EEEEEEEEEeCCCC--CCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcC
Q 000674 1216 IELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1358)
Q Consensus 1216 I~f~nVsf~Y~~~~--~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~I 1293 (1358)
|+++||+++|+... +++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 68999999996431 159999999999999999999999999999999999999999999999999986 456788999
Q ss_pred ceeccccccccc-chhhhcCCC---CCC----CHHHHHHHHHHcCCchHHhcCCC
Q 000674 1294 SIIPQEPTLFRG-SVRTNLDPL---GLY----SDDEIWKALEKCQLKTTISSLPN 1340 (1358)
Q Consensus 1294 siVpQdp~LF~G-TIR~NLdp~---~~~----sDeeI~~AL~~a~l~~~I~~Lp~ 1340 (1358)
+++||+|.+|.+ |+++|+... ... .++++.++++..++.+.....+.
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 135 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVG 135 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhh
Confidence 999999999986 999998421 111 24567889999999876655443
No 476
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.77 E-value=5.1e-19 Score=195.56 Aligned_cols=126 Identities=24% Similarity=0.389 Sum_probs=106.7
Q ss_pred EEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChH---HHhhc
Q 000674 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK---DLRVK 1292 (1358)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~---~LRs~ 1292 (1358)
++++|++++|+.+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+++.. .+|++
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 7899999999533 4599999999999999999999999999999999999999999999999999987643 47889
Q ss_pred Cceecccccccc-cchhhhcCCC----C---CCCHHHHHHHHHHcCCchHHhcCCCcc
Q 000674 1293 LSIIPQEPTLFR-GSVRTNLDPL----G---LYSDDEIWKALEKCQLKTTISSLPNKL 1342 (1358)
Q Consensus 1293 IsiVpQdp~LF~-GTIR~NLdp~----~---~~sDeeI~~AL~~a~l~~~I~~Lp~Gl 1342 (1358)
++++||+|.+|. .|+++|+... + ...+++++++++..++.+.....|..|
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 138 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQL 138 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhC
Confidence 999999999996 5999998521 1 112467889999999988776655433
No 477
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1e-18 Score=192.62 Aligned_cols=127 Identities=31% Similarity=0.499 Sum_probs=112.1
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCC-CCChHHHhhcC
Q 000674 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDIC-SMGLKDLRVKL 1293 (1358)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~-~i~l~~LRs~I 1293 (1358)
.|+++|++|+|.++ .++|+|+||+|++||.++|+|+||||||||+++|.|++.|++|.|.+||.|++ +.+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 58999999999877 67999999999999999999999999999999999999999999999999999 58999999999
Q ss_pred ceecccc--cccccchhhhcCCC--C-CCCHH----HHHHHHHHcCCchHHhcCCCcc
Q 000674 1294 SIIPQEP--TLFRGSVRTNLDPL--G-LYSDD----EIWKALEKCQLKTTISSLPNKL 1342 (1358)
Q Consensus 1294 siVpQdp--~LF~GTIR~NLdp~--~-~~sDe----eI~~AL~~a~l~~~I~~Lp~Gl 1342 (1358)
++|.|+| .+|..||.+.+... + ..+.+ .+.+||+.+++.++-..-|..|
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~L 139 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNL 139 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCcccc
Confidence 9999999 89999999998621 1 23444 4778999999998866656443
No 478
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=9.4e-19 Score=201.73 Aligned_cols=126 Identities=22% Similarity=0.409 Sum_probs=103.2
Q ss_pred eEEEEEEEEEeCCCC---CCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCC----ChH
Q 000674 1215 RIELRQLKIRYRPNA---PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM----GLK 1287 (1358)
Q Consensus 1215 ~I~f~nVsf~Y~~~~---~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i----~l~ 1287 (1358)
.|+++||+++|+++. .++|+||||+|++||++||+|++|||||||+++|.|+++|++|+|.+||+++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 389999999996432 3599999999999999999999999999999999999999999999999999764 356
Q ss_pred HHhhcCceecccc--cccccchhhhcCCC--C-CCC----HHHHHHHHHHcCCc-hHHhcCCC
Q 000674 1288 DLRVKLSIIPQEP--TLFRGSVRTNLDPL--G-LYS----DDEIWKALEKCQLK-TTISSLPN 1340 (1358)
Q Consensus 1288 ~LRs~IsiVpQdp--~LF~GTIR~NLdp~--~-~~s----DeeI~~AL~~a~l~-~~I~~Lp~ 1340 (1358)
.+|++|++|||+| .+|..|+++|+... . ..+ ++.+.++++.+++. +.....|.
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 144 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPF 144 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcc
Confidence 7899999999998 68989999999521 1 123 34566788888886 44444443
No 479
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.77 E-value=7.3e-19 Score=193.89 Aligned_cols=125 Identities=32% Similarity=0.474 Sum_probs=105.5
Q ss_pred EEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCcee
Q 000674 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSII 1296 (1358)
Q Consensus 1217 ~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~IsiV 1296 (1358)
+++|++++|+.+..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|++++++
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 47899999964324599999999999999999999999999999999999999999999999999988888899999999
Q ss_pred cccc--cccccchhhhcCCC---CCCC----HHHHHHHHHHcCCchHHhcCCCc
Q 000674 1297 PQEP--TLFRGSVRTNLDPL---GLYS----DDEIWKALEKCQLKTTISSLPNK 1341 (1358)
Q Consensus 1297 pQdp--~LF~GTIR~NLdp~---~~~s----DeeI~~AL~~a~l~~~I~~Lp~G 1341 (1358)
||+| .++..|+++|+... ...+ ++++.++++..++.+.....|..
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 134 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFT 134 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCccc
Confidence 9998 36788999999531 1122 34577889999998776665543
No 480
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=1.5e-18 Score=199.52 Aligned_cols=129 Identities=22% Similarity=0.382 Sum_probs=110.8
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCC---CEEEEcCEeCCCCChHHHh
Q 000674 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAG---GSILIDGVDICSMGLKDLR 1290 (1358)
Q Consensus 1214 G~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~---G~I~IDGvDI~~i~l~~LR 1290 (1358)
+.|+++|++++|++...++|+|+||+|++||.+||+|++|||||||+++|.|+++|++ |+|.+||.++.+.+...+|
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 4699999999996433459999999999999999999999999999999999999987 8999999999988888889
Q ss_pred hcCceecccc--cccccchhhhcCCC---CCCCH----HHHHHHHHHcCCchHHhcCCCcc
Q 000674 1291 VKLSIIPQEP--TLFRGSVRTNLDPL---GLYSD----DEIWKALEKCQLKTTISSLPNKL 1342 (1358)
Q Consensus 1291 s~IsiVpQdp--~LF~GTIR~NLdp~---~~~sD----eeI~~AL~~a~l~~~I~~Lp~Gl 1342 (1358)
++++++||+| .+++.|+++||... ...++ +++.++++.+++.++....|..|
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~L 144 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANL 144 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccC
Confidence 9999999999 46688999999621 12333 44788999999998887777544
No 481
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=1.4e-18 Score=199.50 Aligned_cols=127 Identities=25% Similarity=0.412 Sum_probs=109.1
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCc
Q 000674 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1358)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~Is 1294 (1358)
-++++||+++|+.+. .+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 3 ~l~~~~l~~~~~~~~-~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 3 LIETRDLCYSYSGSK-EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred eEEEEEEEEEeCCCC-ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 378999999995433 4999999999999999999999999999999999999999999999999999888888999999
Q ss_pred eecccc--cccccchhhhcCCCC---CCC----HHHHHHHHHHcCCchHHhcCCCcc
Q 000674 1295 IIPQEP--TLFRGSVRTNLDPLG---LYS----DDEIWKALEKCQLKTTISSLPNKL 1342 (1358)
Q Consensus 1295 iVpQdp--~LF~GTIR~NLdp~~---~~s----DeeI~~AL~~a~l~~~I~~Lp~Gl 1342 (1358)
++||+| .+|..|+++|+.... ..+ ++.+.++++.+++.+.....|..|
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 138 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHL 138 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccC
Confidence 999998 478889999995211 122 345789999999988877776544
No 482
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.77 E-value=1.2e-18 Score=185.86 Aligned_cols=96 Identities=30% Similarity=0.644 Sum_probs=90.6
Q ss_pred EEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCce
Q 000674 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1358)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~Isi 1295 (1358)
|+++|++++|+.+..++++|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+++.+.+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 57999999997544469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccccchhhhc
Q 000674 1296 IPQEPTLFRGSVRTNL 1311 (1358)
Q Consensus 1296 VpQdp~LF~GTIR~NL 1311 (1358)
+||+|.+|++|+++|+
T Consensus 81 ~~q~~~~~~~tv~~~l 96 (173)
T cd03246 81 LPQDDELFSGSIAENI 96 (173)
T ss_pred ECCCCccccCcHHHHC
Confidence 9999999999999995
No 483
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.76 E-value=1.2e-18 Score=200.25 Aligned_cols=125 Identities=25% Similarity=0.376 Sum_probs=110.1
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcC
Q 000674 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1358)
Q Consensus 1214 G~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~I 1293 (1358)
..|+++||+.+|. ...+++||||+|++||.+.+.|||||||||++++|.||..|++|+|.|||.||.+++.+. +.|
T Consensus 4 ~~l~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~k--R~i 79 (352)
T COG3842 4 PALEIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEK--RPI 79 (352)
T ss_pred ceEEEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhh--ccc
Confidence 3699999999997 346999999999999999999999999999999999999999999999999999999984 899
Q ss_pred ceeccccccccc-chhhhcCCC-C---CCCH----HHHHHHHHHcCCchHHhcCCCcc
Q 000674 1294 SIIPQEPTLFRG-SVRTNLDPL-G---LYSD----DEIWKALEKCQLKTTISSLPNKL 1342 (1358)
Q Consensus 1294 siVpQdp~LF~G-TIR~NLdp~-~---~~sD----eeI~~AL~~a~l~~~I~~Lp~Gl 1342 (1358)
++|+|+.-||.- ||++|+... . ...+ +.+.++|+.+++.++-...|..|
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qL 137 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQL 137 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhh
Confidence 999999999965 999998521 1 1233 36789999999999988877654
No 484
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=1.2e-18 Score=196.20 Aligned_cols=124 Identities=33% Similarity=0.471 Sum_probs=104.4
Q ss_pred EEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCC---hHHHhhc
Q 000674 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG---LKDLRVK 1292 (1358)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~---l~~LRs~ 1292 (1358)
++++||+++|..+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+ ...+|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4789999999642 35999999999999999999999999999999999999999999999999999887 5678899
Q ss_pred Cceecccccccc-cchhhhcCCC------------C---CCCHHHHHHHHHHcCCchHHhcCCC
Q 000674 1293 LSIIPQEPTLFR-GSVRTNLDPL------------G---LYSDDEIWKALEKCQLKTTISSLPN 1340 (1358)
Q Consensus 1293 IsiVpQdp~LF~-GTIR~NLdp~------------~---~~sDeeI~~AL~~a~l~~~I~~Lp~ 1340 (1358)
++++||++.+|. .|+++|+... + ...++++.++++..++.+.....|.
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 143 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRAD 143 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcc
Confidence 999999999887 5999999421 1 1124567888999999776555443
No 485
>PRK10908 cell division protein FtsE; Provisional
Probab=99.76 E-value=2.1e-18 Score=191.70 Aligned_cols=124 Identities=25% Similarity=0.394 Sum_probs=104.0
Q ss_pred EEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHH---Hhhc
Q 000674 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---LRVK 1292 (1358)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~---LRs~ 1292 (1358)
|+++|++++|+++ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+.+++.+. +|++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999533 45999999999999999999999999999999999999999999999999999876544 6889
Q ss_pred Cceeccccccc-ccchhhhcCCC---CCCCH----HHHHHHHHHcCCchHHhcCCC
Q 000674 1293 LSIIPQEPTLF-RGSVRTNLDPL---GLYSD----DEIWKALEKCQLKTTISSLPN 1340 (1358)
Q Consensus 1293 IsiVpQdp~LF-~GTIR~NLdp~---~~~sD----eeI~~AL~~a~l~~~I~~Lp~ 1340 (1358)
++++||+|.+| ..|+++|+... ...++ +++.++++..++.+...+.|.
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 136 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPI 136 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCch
Confidence 99999999875 56999999521 11232 346788999999877665554
No 486
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.76 E-value=2.4e-18 Score=185.87 Aligned_cols=127 Identities=30% Similarity=0.450 Sum_probs=105.1
Q ss_pred EEEEEEEEEeCCCC--CCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHH---H-
Q 000674 1216 IELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---L- 1289 (1358)
Q Consensus 1216 I~f~nVsf~Y~~~~--~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~---L- 1289 (1358)
++++||+..|..+. -.+|+|+||+|++||.|||+||||||||||+++|-++-.|++|.|.++|.|+..++-+. +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67999999996443 35999999999999999999999999999999999999999999999999999998443 3
Q ss_pred hhcCceeccccccccc-chhhhcC-C--CCCC----CHHHHHHHHHHcCCchHHh-cCCCcc
Q 000674 1290 RVKLSIIPQEPTLFRG-SVRTNLD-P--LGLY----SDDEIWKALEKCQLKTTIS-SLPNKL 1342 (1358)
Q Consensus 1290 Rs~IsiVpQdp~LF~G-TIR~NLd-p--~~~~----sDeeI~~AL~~a~l~~~I~-~Lp~Gl 1342 (1358)
|++||+|+|+..|++. |++||+. | +... .++.+.+.++..++.+... ..|..|
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eL 143 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSEL 143 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhc
Confidence 5679999999999977 9999985 2 2211 2455677788889986665 555433
No 487
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.76 E-value=4.1e-18 Score=194.89 Aligned_cols=122 Identities=25% Similarity=0.350 Sum_probs=107.7
Q ss_pred cceEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhc
Q 000674 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVK 1292 (1358)
Q Consensus 1213 ~G~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~ 1292 (1358)
.+.|+++|++++. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+|| +
T Consensus 37 ~~~l~i~nls~~~----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~ 99 (282)
T cd03291 37 DNNLFFSNLCLVG----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------R 99 (282)
T ss_pred CCeEEEEEEEEec----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------E
Confidence 4579999999962 3599999999999999999999999999999999999999999999998 4
Q ss_pred CceecccccccccchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCccccccccCCc
Q 000674 1293 LSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSEQITYD 1351 (1358)
Q Consensus 1293 IsiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~Gldt~v~e~g~ 1351 (1358)
++++||+|.+|++|+++|+.....+.+.++.++++.+++.+.+..+|+++++.+.+.+.
T Consensus 100 i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~ 158 (282)
T cd03291 100 ISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGI 158 (282)
T ss_pred EEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCC
Confidence 99999999999999999997433345566778899999999999999999988876655
No 488
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=1.1e-18 Score=195.41 Aligned_cols=127 Identities=28% Similarity=0.462 Sum_probs=106.4
Q ss_pred EEEEEEEEEeCCC--CCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChH---HHh
Q 000674 1216 IELRQLKIRYRPN--APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK---DLR 1290 (1358)
Q Consensus 1216 I~f~nVsf~Y~~~--~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~---~LR 1290 (1358)
|+++|++++|+.. ..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+.. ..|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 7899999999643 12599999999999999999999999999999999999999999999999999887654 358
Q ss_pred hcCceecccccccc-cchhhhcCCC---CCC----CHHHHHHHHHHcCCchHHhcCCCcc
Q 000674 1291 VKLSIIPQEPTLFR-GSVRTNLDPL---GLY----SDDEIWKALEKCQLKTTISSLPNKL 1342 (1358)
Q Consensus 1291 s~IsiVpQdp~LF~-GTIR~NLdp~---~~~----sDeeI~~AL~~a~l~~~I~~Lp~Gl 1342 (1358)
++++++||+|.+|. .|+++|+... ... .++++.++++..++.+.....|..|
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 141 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQL 141 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhC
Confidence 89999999999997 5999998521 111 2456889999999988776655433
No 489
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.76 E-value=1e-18 Score=192.18 Aligned_cols=121 Identities=23% Similarity=0.348 Sum_probs=104.2
Q ss_pred EEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCce
Q 000674 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1358)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~Isi 1295 (1358)
|+++|++++|.. .++|+|+||++++||.+||+|++|||||||+++|.|+.+|++|+|.+||.++.+. ..+|+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 578999999953 3599999999999999999999999999999999999999999999999999865 667889999
Q ss_pred eccccccc-ccchhhhcCCC---CCCCHHHHHHHHHHcCCchHHhcCCC
Q 000674 1296 IPQEPTLF-RGSVRTNLDPL---GLYSDDEIWKALEKCQLKTTISSLPN 1340 (1358)
Q Consensus 1296 VpQdp~LF-~GTIR~NLdp~---~~~sDeeI~~AL~~a~l~~~I~~Lp~ 1340 (1358)
+||++.+| ..|+++|+... ...+++++.++++..++.+.....|.
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 125 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVK 125 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHh
Confidence 99999888 46999999532 12356788999999999877655443
No 490
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.76 E-value=2e-18 Score=192.71 Aligned_cols=128 Identities=23% Similarity=0.339 Sum_probs=107.8
Q ss_pred eEEEEEEEEEeCCCC--CCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHH---H
Q 000674 1215 RIELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---L 1289 (1358)
Q Consensus 1215 ~I~f~nVsf~Y~~~~--~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~---L 1289 (1358)
.|+++|++++|+++. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 599999999996532 25999999999999999999999999999999999999999999999999999887654 2
Q ss_pred -hhcCceeccccccccc-chhhhcCC---CCCC----CHHHHHHHHHHcCCchHHhcCCCcc
Q 000674 1290 -RVKLSIIPQEPTLFRG-SVRTNLDP---LGLY----SDDEIWKALEKCQLKTTISSLPNKL 1342 (1358)
Q Consensus 1290 -Rs~IsiVpQdp~LF~G-TIR~NLdp---~~~~----sDeeI~~AL~~a~l~~~I~~Lp~Gl 1342 (1358)
+++++++||+|.+|.+ |+++|+.. +... ..+++.++++..++.++....|..|
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 147 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQL 147 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhC
Confidence 3689999999999986 99999852 1111 2456888999999988877766544
No 491
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.6e-18 Score=199.99 Aligned_cols=125 Identities=26% Similarity=0.398 Sum_probs=103.8
Q ss_pred EEEEEEEEEeCCCC---CCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCC----CChHH
Q 000674 1216 IELRQLKIRYRPNA---PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICS----MGLKD 1288 (1358)
Q Consensus 1216 I~f~nVsf~Y~~~~---~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~----i~l~~ 1288 (1358)
|+++||+++|+++. +++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.+++. .....
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999996433 259999999999999999999999999999999999999999999999999963 34667
Q ss_pred HhhcCceecccc--cccccchhhhcCCC--C-CCC----HHHHHHHHHHcCCc-hHHhcCCC
Q 000674 1289 LRVKLSIIPQEP--TLFRGSVRTNLDPL--G-LYS----DDEIWKALEKCQLK-TTISSLPN 1340 (1358)
Q Consensus 1289 LRs~IsiVpQdp--~LF~GTIR~NLdp~--~-~~s----DeeI~~AL~~a~l~-~~I~~Lp~ 1340 (1358)
+|+++++|+|+| .+|.+|+.+|+... . ..+ ++++.++++.+++. ++....|.
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 143 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPF 143 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcc
Confidence 899999999998 79999999999521 1 122 23577889999985 45554444
No 492
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.76 E-value=1.8e-18 Score=195.06 Aligned_cols=124 Identities=31% Similarity=0.460 Sum_probs=103.8
Q ss_pred EEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCCh---HHHhhc
Q 000674 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL---KDLRVK 1292 (1358)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l---~~LRs~ 1292 (1358)
|+++||+++|+++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+++. ..+|++
T Consensus 2 l~~~~l~~~~~~~-~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCCC-cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 6899999999623 459999999999999999999999999999999999999999999999999988764 457889
Q ss_pred Cceecccccccc-cchhhhcCCC------------CC---CCHHHHHHHHHHcCCchHHhcCCC
Q 000674 1293 LSIIPQEPTLFR-GSVRTNLDPL------------GL---YSDDEIWKALEKCQLKTTISSLPN 1340 (1358)
Q Consensus 1293 IsiVpQdp~LF~-GTIR~NLdp~------------~~---~sDeeI~~AL~~a~l~~~I~~Lp~ 1340 (1358)
++++||+|.+|. .|+++|+... +. ..++++.++++..++.+.....+.
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 144 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRAD 144 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcc
Confidence 999999999887 5999999521 01 123467888999999776655443
No 493
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.76 E-value=2.2e-18 Score=191.46 Aligned_cols=126 Identities=30% Similarity=0.479 Sum_probs=104.8
Q ss_pred EEEEEEEEEeCCCC--CCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHH---h
Q 000674 1216 IELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL---R 1290 (1358)
Q Consensus 1216 I~f~nVsf~Y~~~~--~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~L---R 1290 (1358)
++++||+++|.+.. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+.+++..+. |
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996421 359999999999999999999999999999999999999999999999999998876553 4
Q ss_pred -hcCceecccccccc-cchhhhcCC---CCCCC----HHHHHHHHHHcCCchHHhcCCCc
Q 000674 1291 -VKLSIIPQEPTLFR-GSVRTNLDP---LGLYS----DDEIWKALEKCQLKTTISSLPNK 1341 (1358)
Q Consensus 1291 -s~IsiVpQdp~LF~-GTIR~NLdp---~~~~s----DeeI~~AL~~a~l~~~I~~Lp~G 1341 (1358)
++++++||+|.+|. .|+++|+.. ....+ ++++.++++..++.+.....|..
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 141 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSE 141 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhh
Confidence 68999999999996 599999953 11122 34578899999998766655543
No 494
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=1.3e-18 Score=192.23 Aligned_cols=122 Identities=27% Similarity=0.398 Sum_probs=102.7
Q ss_pred EEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCce
Q 000674 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1358)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~Isi 1295 (1358)
++++|++++|.+ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+++.+ ..|+++++
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEEE
Confidence 478999999964 35999999999999999999999999999999999999999999999999998754 35788999
Q ss_pred ecccccccc-cchhhhcCCC---CCC----CHHHHHHHHHHcCCchHHhcCCCc
Q 000674 1296 IPQEPTLFR-GSVRTNLDPL---GLY----SDDEIWKALEKCQLKTTISSLPNK 1341 (1358)
Q Consensus 1296 VpQdp~LF~-GTIR~NLdp~---~~~----sDeeI~~AL~~a~l~~~I~~Lp~G 1341 (1358)
+||+|.+|. .|+++|+... ... .++++.++++..++.++....|..
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 130 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHE 130 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhh
Confidence 999999986 5999999521 111 234678899999998877665543
No 495
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=2e-18 Score=198.78 Aligned_cols=125 Identities=26% Similarity=0.436 Sum_probs=104.9
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCC--CCChHHHhhc
Q 000674 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDIC--SMGLKDLRVK 1292 (1358)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~--~i~l~~LRs~ 1292 (1358)
-|+++||+++|+++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+. ..+...+|++
T Consensus 5 ~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 58999999999633 45999999999999999999999999999999999999999999999999994 3456788999
Q ss_pred Cceecccc--cccccchhhhcCCC---CCCC----HHHHHHHHHHcCCchHHhcCCC
Q 000674 1293 LSIIPQEP--TLFRGSVRTNLDPL---GLYS----DDEIWKALEKCQLKTTISSLPN 1340 (1358)
Q Consensus 1293 IsiVpQdp--~LF~GTIR~NLdp~---~~~s----DeeI~~AL~~a~l~~~I~~Lp~ 1340 (1358)
++++||+| .+|+.|+++|+... ...+ ++.+.++++..++.++....+.
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 140 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTH 140 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcc
Confidence 99999998 57899999999521 1123 2456788899999876555443
No 496
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.8e-18 Score=197.45 Aligned_cols=126 Identities=28% Similarity=0.389 Sum_probs=109.2
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCc
Q 000674 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1358)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~Is 1294 (1358)
.++++||+++|+. ..+|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+.+.+...+|+.++
T Consensus 11 ~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 5999999999953 35999999999999999999999999999999999999999999999999999988889999999
Q ss_pred eeccccccccc-chhhhcCCC-C----------CCCHHHHHHHHHHcCCchHHhcCCCcc
Q 000674 1295 IIPQEPTLFRG-SVRTNLDPL-G----------LYSDDEIWKALEKCQLKTTISSLPNKL 1342 (1358)
Q Consensus 1295 iVpQdp~LF~G-TIR~NLdp~-~----------~~sDeeI~~AL~~a~l~~~I~~Lp~Gl 1342 (1358)
++||++.+|.+ |+++|+... . ...++++.++++.+++.++....|..|
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 148 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSL 148 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccC
Confidence 99999887766 999999521 0 112456889999999988777666544
No 497
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.76 E-value=1.5e-18 Score=191.69 Aligned_cols=124 Identities=32% Similarity=0.505 Sum_probs=103.8
Q ss_pred EEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCC--CChHHHhhcC
Q 000674 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICS--MGLKDLRVKL 1293 (1358)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~--i~l~~LRs~I 1293 (1358)
|+++||+++|.. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.. .+...+|+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 478999999964 359999999999999999999999999999999999999999999999999953 4556788999
Q ss_pred ceecccccccc-cchhhhcCCC----CCCC----HHHHHHHHHHcCCchHHhcCCCc
Q 000674 1294 SIIPQEPTLFR-GSVRTNLDPL----GLYS----DDEIWKALEKCQLKTTISSLPNK 1341 (1358)
Q Consensus 1294 siVpQdp~LF~-GTIR~NLdp~----~~~s----DeeI~~AL~~a~l~~~I~~Lp~G 1341 (1358)
+++||+|.+|. .|+++|+... ...+ ++++.++++..++.+.....|..
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 135 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQ 135 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccc
Confidence 99999999997 5999999532 1122 34577888999987766665543
No 498
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.76 E-value=2.1e-18 Score=196.36 Aligned_cols=120 Identities=31% Similarity=0.435 Sum_probs=102.9
Q ss_pred cceEEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccC-----CCCCEEEEcCEeCCC--CC
Q 000674 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICS--MG 1285 (1358)
Q Consensus 1213 ~G~I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e-----~~~G~I~IDGvDI~~--i~ 1285 (1358)
++.|+++|++++|.+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 11 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 568999999999963 359999999999999999999999999999999999987 589999999999964 45
Q ss_pred hHHHhhcCceecccccccccchhhhcCCC----CCCC----HHHHHHHHHHcCCchH
Q 000674 1286 LKDLRVKLSIIPQEPTLFRGSVRTNLDPL----GLYS----DDEIWKALEKCQLKTT 1334 (1358)
Q Consensus 1286 l~~LRs~IsiVpQdp~LF~GTIR~NLdp~----~~~s----DeeI~~AL~~a~l~~~ 1334 (1358)
...+|++++++||+|.+|..|+++|+... ...+ +++++++++.+++.+.
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 145 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNE 145 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChh
Confidence 67889999999999999999999999531 1122 3568889999998543
No 499
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.76 E-value=2e-18 Score=185.08 Aligned_cols=95 Identities=32% Similarity=0.612 Sum_probs=88.4
Q ss_pred EEEEEEEEEeCCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcCce
Q 000674 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1358)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~Isi 1295 (1358)
|+++|++++|+...+++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++... ...+|+++++
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 579999999965434699999999999999999999999999999999999999999999999999877 6778999999
Q ss_pred ecccccccccchhhhc
Q 000674 1296 IPQEPTLFRGSVRTNL 1311 (1358)
Q Consensus 1296 VpQdp~LF~GTIR~NL 1311 (1358)
+||+|.+|++|+++|+
T Consensus 80 ~~q~~~~~~~tv~~~i 95 (178)
T cd03247 80 LNQRPYLFDTTLRNNL 95 (178)
T ss_pred EccCCeeecccHHHhh
Confidence 9999999999999997
No 500
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=2.6e-18 Score=197.22 Aligned_cols=128 Identities=23% Similarity=0.356 Sum_probs=109.0
Q ss_pred eEEEEEEEEEeCCC-CCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCEeCCCCChHHHhhcC
Q 000674 1215 RIELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1358)
Q Consensus 1215 ~I~f~nVsf~Y~~~-~~~VLk~Is~~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LRs~I 1293 (1358)
-|+++||+++|+.. ..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999643 24599999999999999999999999999999999999999999999999999988888899999
Q ss_pred ceecccc--cccccchhhhcCCC-C--CCCHH----HHHHHHHHcCCchHHhcCCCcc
Q 000674 1294 SIIPQEP--TLFRGSVRTNLDPL-G--LYSDD----EIWKALEKCQLKTTISSLPNKL 1342 (1358)
Q Consensus 1294 siVpQdp--~LF~GTIR~NLdp~-~--~~sDe----eI~~AL~~a~l~~~I~~Lp~Gl 1342 (1358)
+++||+| .++..|+.+||... . ..+++ ++.++++.+++.++....|..|
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 141 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARL 141 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccC
Confidence 9999998 46788999999521 1 23333 4578899999988877655444
Done!