Query 000674
Match_columns 1358
No_of_seqs 479 out of 5013
Neff 7.7
Searched_HMMs 29240
Date Tue Mar 26 17:41:54 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000674.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_445-449//hhsearch_pdb/000674hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 1387.5 104.1 1126 218-1356 2-1220(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 1099.1 99.7 1071 277-1356 48-1174(1284)
3 4a82_A Cystic fibrosis transme 1.0 1 1 622.5 64.2 545 270-817 7-574 (578)
4 4f4c_A Multidrug resistance pr 1.0 1 1 619.5 59.1 524 294-819 769-1316(1321)
5 3qf4_B Uncharacterized ABC tra 1.0 1 1 613.1 62.1 543 272-820 32-591 (598)
6 3qf4_A ABC transporter, ATP-bi 1.0 1 1 609.6 68.7 546 268-819 14-578 (587)
7 3b60_A Lipid A export ATP-bind 1.0 1 1 584.6 70.6 541 271-819 19-579 (582)
8 3b5x_A Lipid A export ATP-bind 1.0 1 1 583.1 74.8 542 270-819 18-579 (582)
9 2yl4_A ATP-binding cassette SU 1.0 1 1 582.0 68.4 544 271-818 13-582 (595)
10 3g5u_A MCG1178, multidrug resi 1.0 1 1 532.4 56.4 543 274-820 702-1271(1284)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=1387.54 Aligned_cols=1126 Identities=19% Similarity=0.220 Sum_probs=825.9
Q ss_pred HHHHC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC---------CCCCCCHHHHHHHHH-HHHHHHHHHHHH
Q ss_conf 98141-6998889999999548289999999999999987202---------799983089999999-668799999999
Q 000674 218 LSLGY-SKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENN---------SNNNGNLVRKVITNV-YLKENIFIAICA 286 (1358)
Q Consensus 218 ~~~g~-~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~---------~~~~~~~l~~~l~~~-~~~~~~~~~~~~ 286 (1358)
++.|. +++|+..|.+++.|+|..+...+.+++.|.+..++.. +...++.-++.|++. -+++.++..+..
T Consensus 2 ~r~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Lfrya~~~d~~l~~~g~ 81 (1321)
T 4f4c_A 2 LRNGSLRQSLRTLDSFSLAPEDVLKTAIKTVEDYEGDNIDSNGEIKITRDAKEEVVNKVSIPQLYRYTTTLEKLLLFIGT 81 (1321)
T ss_dssp --CHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTSTTTBCSSSCBCCSCC---CCSSCCCHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCCHHHCCCCCCCCCCCCCHHHCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHH
T ss_conf 87731006876354456795011100001134542435543343100122320256877999973156767899999999
Q ss_pred HHHHHHHHHHHHH---HHHHHHHCC-------CC--------CC----CHHH-----HHHHHHHHHHHHHHHH-HHHHHH
Q ss_conf 9999999999999---999998413-------89--------73----2457-----9999999999999999-999999
Q 000674 287 LLRTIAVVVGPLL---LYAFVNYSN-------RG--------EE----NLQE-----GLSIVGCLIITKVVES-FTQRHC 338 (1358)
Q Consensus 287 ~~~~~~~~~~P~l---l~~li~~~~-------~~--------~~----~~~~-----g~~~~~~l~~~~~~~~-~~~~~~ 338 (1358)
+...+.+.+.|++ +..+++.+. .. .. .... .+.++ ++++...+-+ +....+
T Consensus 82 ~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~i~~~~~~~~~~~~~ 160 (1321)
T 4f4c_A 82 LVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVMNVVWSYA-AMTVGMWAAGQITVTCY 160 (1321)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999970100014543000344310016899999999999999-99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999984599346888997899999996999994189-8999999999999999999999996
Q 000674 339 FFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFP-FWFHLTWSLALQLFLAIGVLFGVVG 417 (1358)
Q Consensus 339 ~~~~~~~g~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~-~~~~~~w~~plqi~~a~~~L~~~lG 417 (1358)
.+.+.++..++| ..+|+|.++++-...+++++|+++|+++.|++++.+++ ..+..++..+++++.++++++..-.
T Consensus 161 ~~~~~r~~~~lR----~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~~~i~~~~~~~ 236 (1321)
T 4f4c_A 161 LYVAEQMNNRLR----REFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSW 236 (1321)
T ss_dssp HHHHHHHHHHHH----HHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHH----HHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999----9999999788989987998489999999999999999999999999999999999999999989
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999998999999999999999999999999999994099999822299999999999999999999999
Q 000674 418 LGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQ 497 (1358)
Q Consensus 418 ~~~l~gl~v~~i~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~EiL~~Ik~IK~~awE~~f~~~i~~~R~~El~~l~~~~ 497 (1358)
..+++.++++.+..++...+++.+.+..++.++..+++.+.++|.++|||+||+|+||+.+.++..+..++..+.-.+..
T Consensus 237 ~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 316 (1321)
T 4f4c_A 237 QLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKG 316 (1321)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999998399999821429999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999899999-999999999973898889888999999999989999999999999999999999999984346
Q 000674 498 LRKAYGTVIYWMSPTI-ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDH 576 (1358)
Q Consensus 498 ~~~~~~~~~~~~~p~l-v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~L~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~ 576 (1358)
...+...........+ ..++.+.+..++.++.++++.+|+++.++..+..|+..++..+..+.++.+|.+||.+||+.+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~ 396 (1321)
T 4f4c_A 317 LFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRK 396 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999999999999999959986999999999999999999989999999999999999999997178
Q ss_pred C-CCCCCHHCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 7-896000001235899848999447972799987620137898508809999879999888899998299658771899
Q 000674 577 E-LNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655 (1358)
Q Consensus 577 e-~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~ 655 (1358)
+ .++.........+.++.|+++|++|+|+..++.|+|+|+||++++|++++||||+|||||||+++|+|++++.+|+|.
T Consensus 397 ~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~ 476 (1321)
T 4f4c_A 397 PVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKIT 476 (1321)
T ss_dssp CCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCC
T ss_conf 53456665565677888767999855407999987433331886228827899805898577888875456516448615
Q ss_pred ECC-------------EEEEEECCCCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 909-------------2999807887999888999852999-99899999999823078882189999741258877789
Q 000674 656 LYG-------------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1358)
Q Consensus 656 ~~g-------------~iayv~Q~~wi~~~TireNIlfg~~-~d~~~y~~vi~~c~L~~dl~~lp~GD~T~IGe~g~~LS 721 (1358)
++| +++||+|+||++|+||||||+||.| .+++++.++++.|++++|++.||+||+|+|||+|.+||
T Consensus 477 idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LS 556 (1321)
T 4f4c_A 477 IDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLS 556 (1321)
T ss_dssp ETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCC
T ss_pred CCCCCCHHCCHHHHHHCCCCCCCCCEEECCCHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCEECCCCCCCC
T ss_conf 79965011259998504666587533207861678864155220999999998756546887088888607558988777
Q ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCEEEEEECCEEEEECC
Q ss_conf 58999999999971499899872888888999999999999967029969999838810361039699993993889249
Q 000674 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1358)
Q Consensus 722 GGQkqRi~LARAly~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l~~kT~ilvth~~~~l~~~d~i~~l~~G~i~~~G~ 801 (1358)
|||||||+||||+|++|+|++||||+||||+++++ ++++++.+.+++||+|+|||+++.++.||+|++|++|+|+|+|+
T Consensus 557 GGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~-~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gt 635 (1321)
T 4f4c_A 557 GGQKQRIAIARALVRNPKILLLDEATSALDAESEG-IVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGD 635 (1321)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHH-HHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHH-HHHHHHHHHHCCCEEEEECCCHHHHHHCCEEEEEECCEEECCCC
T ss_conf 77879999999872599989984554468878999-99999999847988999736387898689899963996513689
Q ss_pred HHHHHHCCCHHHHHHHHHHHHCCC----CCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 689986182389999962210026----999988898984211124-678899999988877786432122246777458
Q 000674 802 YQELLLAGTAFEQLVNAHRDAITG----LGPLDNAGQGGAEKVEKG-RTARPEEPNGIYPRKESSEGEISVKGLTQLTED 876 (1358)
Q Consensus 802 ~~el~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (1358)
|+||+++++.|.++.+.+...... ......+........+.. ......+.+... .+... ............++
T Consensus 636 h~eL~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~ 713 (1321)
T 4f4c_A 636 HRALMAQQGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIM-NRVRS-STIGSITNGPVIDE 713 (1321)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH-HHHHC-CCCCCCCCCCCHHH
T ss_conf 99999853279999996221222233233443322321112222234222222211022-11101-32124567740257
Q ss_pred ---------------HHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCCCC---CCH
Q ss_conf ---------------88750760389999999970442589999999999999999799999864----03787---742
Q 000674 877 ---------------EEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYA----IQIPK---ITS 934 (1358)
Q Consensus 877 ---------------e~~~~g~v~~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~----~~~~~---~~~ 934 (1358)
|.++.|..++..++.|......++.+++.+++............+|+..| ...+. ...
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1321)
T 4f4c_A 714 KEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQG 793 (1321)
T ss_dssp --CCCCCCHHHHHHHTTTTSCCCCCCHHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTH
T ss_pred HHHHCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 77531540389999999970786310999999987789999999999999999999999999999987517934556678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCHHHHHHHHHCCHHHHHHHCHHH
Q ss_conf 489999989899999999999999999999999999999989863298655334--680047998712798998320799
Q 000674 935 GILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDS--TPVGRILTRLSSDLSILDFDIPFS 1012 (1358)
Q Consensus 935 ~~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~as~~l~~~l~~~ilr~p~sfFd~--~p~GrIlnRfs~Di~~id~~l~~~ 1012 (1358)
.+|..+|++++++..++.+++.++....+.++++++|.+++++++++|++|||+ +|+|+|+||+++|++.+|..++..
T Consensus 794 ~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~ 873 (1321)
T 4f4c_A 794 HFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFR 873 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999998887349933321678884888850250599999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHCCC
Q ss_conf 99999999999999988997768999999999999999999999978999999815046278999997613288872342
Q 000674 1013 IVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNM 1092 (1358)
Q Consensus 1013 l~~~~~~~~~~i~~i~vi~~~~~~~~l~~i~l~~~~~~~~~~y~~~sr~l~rl~~~~~spi~s~~~Etl~G~~tIRaf~~ 1092 (1358)
+..++..++.+++.++++++.+|.+.++++++++++.+...++.+..+...+......++...++.|+++|+++||+|++
T Consensus 874 l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~ 953 (1321)
T 4f4c_A 874 FSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAR 953 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999986537777022137868999999998889999999999999999999999988898899999962798886141
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCC--CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999988866799999998899999999999999999999-9986189--65656999999999999999999
Q 000674 1093 VDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF-LVLIPRG--YVAPGLVGLSLSYAFTLTGTQVF 1169 (1358)
Q Consensus 1093 ~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~l~-~v~~~~~--~is~g~~gl~l~ya~~l~~~l~~ 1169 (1358)
++++.+++.+..|...+..+.......+.......+..+...++... +.++..+ .+.++.+...+.+......++.+
T Consensus 954 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 1033 (1321)
T 4f4c_A 954 EDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGF 1033 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 48899999999999999999999999999999999999999999987578875376542147899999999877889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCC-CCCCCCCEEEECCCCEEEE
Q ss_conf 999999999885599999984449999998767899999999755099998899838999-9842262177509959999
Q 000674 1170 LSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNA-PLVLKGITCTFSEGTRVGV 1248 (1358)
Q Consensus 1170 l~~~~~~le~~~~sveRi~ey~~~~~E~~~~~~~~~~~~~wp~~G~Ief~nvsf~Y~~~~-~~VLk~Isl~I~~GekVgI 1248 (1358)
+.+.+.+++..+.+++|+.++++.++|.+. ...+++.||..|.|+|+||+|+|+++. .+|||||||+|+|||||||
T Consensus 1034 ~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaI 1110 (1321)
T 4f4c_A 1034 ATSYFPEYAKATFAGGIIFGMLRKISKIDS---LSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLAL 1110 (1321)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHCCCSSCT---TCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC---CCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEE
T ss_conf 999999999999999989998607665777---66778788888818999879857999988212451699889899999
Q ss_pred ECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCCEECCCCCCCCCCHHHHC----CCCCCCCHHHHHH
Q ss_conf 879996389999899315489997799969738999947885019153466522346415514----9999999999999
Q 000674 1249 VGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL----DPLGLYSDDEIWK 1324 (1358)
Q Consensus 1249 VGrTGSGKSTL~~~L~Rl~ep~~G~I~IDGvDI~~i~l~~LRs~isiIpQdp~LF~GTIR~NL----dp~~~~sDeeI~~ 1324 (1358)
|||||||||||+++|+|||||++|+|+|||+||+++++++||++|++|||||+||+||||+|| || .+++|+|||+
T Consensus 1111 VG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~-~~~sd~ei~~ 1189 (1321)
T 4f4c_A 1111 VGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDP-SSVTMAQVEE 1189 (1321)
T ss_dssp ECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCT-TTSCHHHHHH
T ss_pred ECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHHHEEEECCCCEEECCCHHHHHHCCCCC-CCCCHHHHHH
T ss_conf 899998199999999568638997899999986549999998545998789973272399997454999-9999999999
Q ss_pred HHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99984981587307886564023377678778
Q 000674 1325 ALEKCQLKTTISSLPNKLDSSEQITYDYGWSS 1356 (1358)
Q Consensus 1325 AL~~a~l~~~I~~Lp~gldt~v~e~g~~n~s~ 1356 (1358)
||++|+++|||++||+||||+|+|+|. |+|-
T Consensus 1190 Al~~a~l~~~I~~Lp~GldT~vge~G~-~LSg 1220 (1321)
T 4f4c_A 1190 AARLANIHNFIAELPEGFETRVGDRGT-QLSG 1220 (1321)
T ss_dssp HHHHTTCHHHHHTSTTTTCSEETTTSC-SSCH
T ss_pred HHHHHCCHHHHHCCCCCCCCEECCCCC-CCCH
T ss_conf 999829849997176789998238891-5699
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=1099.10 Aligned_cols=1071 Identities=18% Similarity=0.185 Sum_probs=751.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----------CC--------CH-HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8799999999999999999999999999841389----------73--------24-57999999999999999999999
Q 000674 277 KENIFIAICALLRTIAVVVGPLLLYAFVNYSNRG----------EE--------NL-QEGLSIVGCLIITKVVESFTQRH 337 (1358)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~----------~~--------~~-~~g~~~~~~l~~~~~~~~~~~~~ 337 (1358)
..+++..++.++..+...+.|+++..+++..... .. .. .....++..++...++..++...
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (1284)
T 3g5u_A 48 LYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYI 127 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999986134443322222211111002446889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999998459934688899789999999699999418989-9999999999999999999999
Q 000674 338 CFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVV 416 (1358)
Q Consensus 338 ~~~~~~~~g~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~-~~~~w~~plqi~~a~~~L~~~l 416 (1358)
..+...+.+.++-..+...+|+|.++++....+++++|+++|.++.|++.+.+.... +..+....+.++.++++++..-
T Consensus 128 ~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 207 (1284)
T 3g5u_A 128 QVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRG 207 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999986998997568877899999988999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68999999999999999899999999999999999999999999999409999982229999999999999999999999
Q 000674 417 GLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEA 496 (1358)
Q Consensus 417 G~~~l~gl~v~~i~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~EiL~~Ik~IK~~awE~~f~~~i~~~R~~El~~l~~~ 496 (1358)
...+++.++++.++..+...+.+..++..++..+..++..+...|.++||++||.|++|+.+.++..+.-++-.+.-.+.
T Consensus 208 ~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~~~~ 287 (1284)
T 3g5u_A 208 WKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKK 287 (1284)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999787999984653999999999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999998-9999999999999997389888988899999999998999999999999999999999999998434
Q 000674 497 QLRKAYGTVIYW-MSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLD 575 (1358)
Q Consensus 497 ~~~~~~~~~~~~-~~p~lv~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~L~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~ 575 (1358)
....+....+.. .......++.+.+..++..+.++++.+++.+..+.....|+..+...+..+.++..+.+|+.++++.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~ 367 (1284)
T 3g5u_A 288 AITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDN 367 (1284)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999999999999992998899999999999999999999999999999999999999999728
Q ss_pred CC-CCCCCHHCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 67-89600000123589984899944797279998762013789850880999987999988889999829965877189
Q 000674 576 HE-LNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654 (1358)
Q Consensus 576 ~e-~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v 654 (1358)
++ .++.......+++..+.|+++|++|+|+.+++.++|+|+||++++|+.++|+|++|||||||+++|+|++++.+|+|
T Consensus 368 ~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i 447 (1284)
T 3g5u_A 368 KPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447 (1284)
T ss_dssp CCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEE
T ss_conf 98677666567777777771899998997699998710125458975998899989999979999999807889997389
Q ss_pred EECC-------------EEEEEECCCCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 9909-------------2999807887999888999852999-9989999999982307888218999974125887778
Q 000674 655 NLYG-------------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1358)
Q Consensus 655 ~~~g-------------~iayv~Q~~wi~~~TireNIlfg~~-~d~~~y~~vi~~c~L~~dl~~lp~GD~T~IGe~g~~L 720 (1358)
.++| .++||+|+||++++||+|||.||.+ .+++++.++++.|++.++++.+|+|++|.+||+|.+|
T Consensus 448 ~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~L 527 (1284)
T 3g5u_A 448 SIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQL 527 (1284)
T ss_dssp EETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSS
T ss_pred EECCEEHHHCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 99999877579999986548986887537766999974579899999999999982969999746563345014787865
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCEEEEEECCEEEEEC
Q ss_conf 95899999999997149989987288888899999999999996702996999983881036103969999399388924
Q 000674 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800 (1358)
Q Consensus 721 SGGQkqRi~LARAly~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l~~kT~ilvth~~~~l~~~d~i~~l~~G~i~~~G 800 (1358)
||||||||+||||++++|+|++||||+|+||+++++.+. +++....+++|+|+|||+++.+..||+|++|++|+|++.|
T Consensus 528 SgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~-~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g 606 (1284)
T 3g5u_A 528 SGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQ-AALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQG 606 (1284)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHH-HHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCEEEEEC
T ss_conf 999999999999995299989997987777999999999-9999973999899994077899749989999899999978
Q ss_pred CHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCHHHH
Q ss_conf 96899861823899999622100269999888989842111246788999999888777864321--2224677745888
Q 000674 801 NYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEI--SVKGLTQLTEDEE 878 (1358)
Q Consensus 801 ~~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~e~ 878 (1358)
+|+|+++.++.|.++...+.......... .......... ....................... ..........+|+
T Consensus 607 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1284)
T 3g5u_A 607 NHDELMREKGIYFKLVMTQTAGNEIELGN--EACKSKDEID-NLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEA 683 (1284)
T ss_dssp CHHHHHHTTSHHHHHHHHTC------------------------------------------------------------
T ss_pred CHHHHHHCCCHHHHHHHHHHHCCCCCCCC--CCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 89999867877999999743002211133--3333222223-44333333332000345433344564223321102455
Q ss_pred HH--HCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHHH
Q ss_conf 75--076038999999997044258999999999999999----979999986403787-----7424899999898999
Q 000674 879 ME--IGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQ----AAATYWLAYAIQIPK-----ITSGILIGVYAGVSTA 947 (1358)
Q Consensus 879 ~~--~g~v~~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~wl~~~~~~~~-----~~~~~~l~iy~~l~~~ 947 (1358)
.+ .....+..+.+|.+.......+ .+++.++...+. .....++..+..... .....+..+|++++++
T Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 761 (1284)
T 3g5u_A 684 LDEDVPPASFWRILKLNSTEWPYFVV--GIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGII 761 (1284)
T ss_dssp CCCCCSCCCTTHHHHHHHHTCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 53136625899999984515799999--9999999999999999999999999855685033677999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCHHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999998986329865533--46800479987127989983207999999999999999
Q 000674 948 SAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFD--STPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLA 1025 (1358)
Q Consensus 948 ~~i~~~~~~~~~~~~~~~as~~l~~~l~~~ilr~p~sfFd--~~p~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~ 1025 (1358)
..++.+++.+.....+.+...++|.+++++++++|++||| .+|+|+++||+++|++.++..++..+..++..++.+++
T Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~ 841 (1284)
T 3g5u_A 762 SFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGT 841 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999998399888757899889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99889977689999999999999999999999789999998150462789999976132888723428999999999998
Q 000674 1026 IIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVD 1105 (1358)
Q Consensus 1026 ~i~vi~~~~~~~~l~~i~l~~~~~~~~~~y~~~sr~l~rl~~~~~spi~s~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d 1105 (1358)
.+++++..+|.+.++++..++++..+...+.+..+...+......+....++.|+++|+++||+|++++++.+++.+..+
T Consensus 842 ~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~ 921 (1284)
T 3g5u_A 842 GIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQ 921 (1284)
T ss_dssp HHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99999999699999999999999999999999999999999999999999999999889999984659999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 886679999999889999999999999999999-9998618965656999999999999999999999999999885599
Q 000674 1106 IDASLFFHTNGVMEWLILRVEALQNLTLFTAAL-FLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISV 1184 (1358)
Q Consensus 1106 ~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~l-~~v~~~~~~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sv 1184 (1358)
...+..........+.......+..+....... ...++..+.++.|.+..++.+......++..+.....+++....+.
T Consensus 922 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 1001 (1284)
T 3g5u_A 922 IPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSA 1001 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999990980699999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCC-CCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 99998444999999876789999999975509999889983899-99842262177509959999879996389999899
Q 000674 1185 ERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISAL 1263 (1358)
Q Consensus 1185 eRi~ey~~~~~E~~~~~~~~~~~~~wp~~G~Ief~nvsf~Y~~~-~~~VLk~Isl~I~~GekVgIVGrTGSGKSTL~~~L 1263 (1358)
+|+.++++.+++.+...+. +.+.++.+|.|+|+||+|+|+.. ..++|+|+||+|++||++||||+||||||||+++|
T Consensus 1002 ~ri~~~l~~~~~~~~~~~~--~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l 1079 (1284)
T 3g5u_A 1002 SHIIRIIEKTPEIDSYSTQ--GLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL 1079 (1284)
T ss_dssp HHHHHHHHSCCSSSSCCSS--CCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCC--CCCCCCCCCCEEEEEEEEECCCCCCCEEECCEEEEECCCCEEEEECCCCCCHHHHHHHH
T ss_conf 9999998388766665556--65456777857999989977999987002030599769988999889999789999999
Q ss_pred HCCCCCCCCEEEECCEECCCCCHHHHHHCCCEECCCCCCCCCCHHHHCCCC---CCCCHHHHHHHHHHCCCCHHHHCCCC
Q ss_conf 315489997799969738999947885019153466522346415514999---99999999999998498158730788
Q 000674 1264 FRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL---GLYSDDEIWKALEKCQLKTTISSLPN 1340 (1358)
Q Consensus 1264 ~Rl~ep~~G~I~IDGvDI~~i~l~~LRs~isiIpQdp~LF~GTIR~NLdp~---~~~sDeeI~~AL~~a~l~~~I~~Lp~ 1340 (1358)
+|+++|++|+|.+||+|+++++++++|+++++|||||.+|++|||+||.+. ...+++++++++++++++++++++|+
T Consensus 1080 ~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~ 1159 (1284)
T 3g5u_A 1080 ERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPD 1159 (1284)
T ss_dssp TTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTT
T ss_pred HCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHCCC
T ss_conf 46867899779899998000789999702689877874066669999746687789999999999998395999972704
Q ss_pred CCCCCCCCCCCCCCCC
Q ss_conf 6564023377678778
Q 000674 1341 KLDSSEQITYDYGWSS 1356 (1358)
Q Consensus 1341 gldt~v~e~g~~n~s~ 1356 (1358)
||||.|+|+|. +.|-
T Consensus 1160 gldt~vge~G~-~LSg 1174 (1284)
T 3g5u_A 1160 KYNTRVGDKGT-QLSG 1174 (1284)
T ss_dssp GGGCBCSTTSC-SSCH
T ss_pred CCCCCCCCCCC-CCCH
T ss_conf 24561178889-3389
No 3
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=1.00 E-value=1 Score=622.55 Aligned_cols=545 Identities=21% Similarity=0.284 Sum_probs=445.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-C-HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999966879999999999999999999999999984138973-2-45----7999999999999999999999999999
Q 000674 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEE-N-LQ----EGLSIVGCLIITKVVESFTQRHCFFGSR 343 (1358)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~-~-~~----~g~~~~~~l~~~~~~~~~~~~~~~~~~~ 343 (1358)
.+.+.+++.++...++.++..++..+.|+++..+++....... . .. ..+.++.++++..++..++.....+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (578)
T 4a82_A 7 QFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQ 86 (578)
T ss_dssp HHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99889999999999999999999999999999999999816871146778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999998459934688899789999999699999418989-9999999999999999999999689999
Q 000674 344 RSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALP 422 (1358)
Q Consensus 344 ~~g~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~-~~~~w~~plqi~~a~~~L~~~lG~~~l~ 422 (1358)
+.+.++...+...+|+|.++++....++.++|+++|.++.|++++.++... ++.+|..++.+++++++++..-++.+++
T Consensus 87 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~ 166 (578)
T 4a82_A 87 WTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLA 166 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999987899997689869999999999999999999999999999999999999999996999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999899999999999999999999999999999409999982229999999999999999999999999999
Q 000674 423 GLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY 502 (1358)
Q Consensus 423 gl~v~~i~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~EiL~~Ik~IK~~awE~~f~~~i~~~R~~El~~l~~~~~~~~~ 502 (1358)
.++++.+...+...+.+...+.+++.++..+++.+.++|.++|||+||.|+||+.+.++..+.++++.+...+.....+.
T Consensus 167 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (578)
T 4a82_A 167 ALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAY 246 (578)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999998249999981664999999999999999999999999999
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999899999--9999999999738988898889999999999899999999999999999999999999843467896
Q 000674 503 GTVIYWMSPTI--ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNN 580 (1358)
Q Consensus 503 ~~~~~~~~p~l--v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~L~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~ 580 (1358)
...+......+ +.+..++++.... +.++++.+++.+.++..+..|+..++..+..+.++.+|.+|+.++++.++..+
T Consensus 247 ~~~~~~~~~~~~~~~v~~~g~~~v~~-g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 325 (578)
T 4a82_A 247 SFAAINTVTDIGPIIVIGVGAYLAIS-GSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIK 325 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-TSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999999999999999999985-99589999999999999999999999999999999999999999976897666
Q ss_pred CCHHCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC--
Q ss_conf 000001235899848999447972799987620137898508809999879999888899998299658771899909--
Q 000674 581 DDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-- 658 (1358)
Q Consensus 581 ~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g-- 658 (1358)
+.....+.+...+.++++|.+|+|+.+ +.++|+|+||++++|+.++|+||+|||||||+++|+|+++|.+|+|.++|
T Consensus 326 ~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~ 404 (578)
T 4a82_A 326 NGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHN 404 (578)
T ss_dssp CCTTCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEE
T ss_pred CCCCCCCCCCCCCEEEEEEEEEECCCC-CCCCEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEE
T ss_conf 787766667778807999999975899-9741343379987999999989999859999999846788999679999998
Q ss_pred -----------EEEEEECCCCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf -----------2999807887999888999852999-9989999999982307888218999974125887778958999
Q 000674 659 -----------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1358)
Q Consensus 659 -----------~iayv~Q~~wi~~~TireNIlfg~~-~d~~~y~~vi~~c~L~~dl~~lp~GD~T~IGe~g~~LSGGQkq 726 (1358)
+++||+|+||++++|++|||.+|.+ .++++..++++.+++.++++.+|+|++|.+||+|.+|||||||
T Consensus 405 ~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Q 484 (578)
T 4a82_A 405 IKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQ 484 (578)
T ss_dssp GGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHH
T ss_pred HHHCCHHHHHHHEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCHHHHHHCCCCCCCCHHHHH
T ss_conf 44278999960068992898347645999985279998899999999880959999757330102530688967999999
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCEEEEEECCEEEEECCHHHHH
Q ss_conf 99999997149989987288888899999999999996702996999983881036103969999399388924968998
Q 000674 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806 (1358)
Q Consensus 727 Ri~LARAly~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l~~kT~ilvth~~~~l~~~d~i~~l~~G~i~~~G~~~el~ 806 (1358)
|++||||++++|++++||||+|+||+++++.+. +++....+++|+|++||+++.+..||+|++|++|++++.|+++|++
T Consensus 485 rv~lAral~~~p~illlDEpts~LD~~~~~~i~-~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~ 563 (578)
T 4a82_A 485 RLSIARIFLNNPPILILDEATSALDLESESIIQ-EALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELI 563 (578)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHH-HHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCEEEEECCHHHHH
T ss_conf 999999997499999997865457999999999-9999980899799983178999719989999899899988899998
Q ss_pred HCCCHHHHHHH
Q ss_conf 61823899999
Q 000674 807 LAGTAFEQLVN 817 (1358)
Q Consensus 807 ~~~~~~~~l~~ 817 (1358)
+.++.|.++.+
T Consensus 564 ~~~~~~~~~~~ 574 (578)
T 4a82_A 564 AKQGAYEHLYS 574 (578)
T ss_dssp HTTSHHHHHHT
T ss_pred HCCCHHHHHHH
T ss_conf 58838999998
No 4
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=619.51 Aligned_cols=524 Identities=18% Similarity=0.214 Sum_probs=384.4
Q ss_pred HHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC--C
Q ss_conf 999999999998413-8973245799999999999999999999999999999999999999999999845993468--8
Q 000674 294 VVGPLLLYAFVNYSN-RGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGR--K 370 (1358)
Q Consensus 294 ~~~P~ll~~li~~~~-~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~rir~~l~~~iy~K~L~ls~~~~--~ 370 (1358)
-..++++..+++... ++......+..|+..+++..++..++.....+...+.+.++-..+...+|+|.++.+-.-. .
T Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~ 848 (1321)
T 4f4c_A 769 PTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSP 848 (1321)
T ss_dssp HHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSG
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCC
T ss_conf 99999999999875179345566789999999999999999999999999999999999999999888734993332167
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89978999999969999941898-99999999999999999999999689999999999999998999999999999999
Q 000674 371 KHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFM 449 (1358)
Q Consensus 371 ~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~a~~~L~~~lG~~~l~gl~v~~i~~~l~~~~~~~~~~~q~~~m 449 (1358)
++++|+++|.++.|++.+.+... .+..+....+.++.++++++..-...++..++++.++........+...+.+.+..
T Consensus 849 ~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~ 928 (1321)
T 4f4c_A 849 QNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSA 928 (1321)
T ss_dssp GGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTS
T ss_pred CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88848888502505999999999999999998653777702213786899999999888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHC--
Q ss_conf 9999999999999940999998222999999999999999999999999999999999899999-9999999999738--
Q 000674 450 IAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTI-ISSVIFLGCALTG-- 526 (1358)
Q Consensus 450 ~~~D~R~~~~~EiL~~Ik~IK~~awE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~p~l-v~~~~f~~~~l~~-- 526 (1358)
+...+......|.++|+++||.|++|+.|.++..+.-+...+...+.....+....+......+ ..++.+.+..++.
T Consensus 929 ~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~ 1008 (1321)
T 4f4c_A 929 SEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITD 1008 (1321)
T ss_dssp SHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99888988999999627988861414889999999999999999999999999999999999999999998757887537
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCHHCCCCCCCCCCEEEEEEEEEEC
Q ss_conf 988898889999999999899999999999999999999999999843467-8960000012358998489994479727
Q 000674 527 SAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHE-LNNDDVRRISLQKSDRSVKIQEGNFSWD 605 (1358)
Q Consensus 527 ~~~Lt~~~~Ft~l~lf~~L~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e-~~~~~~~~~~~~~~~~~i~~~~~~f~w~ 605 (1358)
...+.+..+|..+..+.....|+..+......+.++..+.+|+.++++.++ .++.. ...+..+..+.|+|+|++|+|+
T Consensus 1009 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~-~~~~~~~~~g~I~f~nVsf~Y~ 1087 (1321)
T 4f4c_A 1009 PPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLS-LAGEKKKLYGKVIFKNVRFAYP 1087 (1321)
T ss_dssp SCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTC-CCSBCCCCCCCEEEEEEEECCT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCEEEEEEEEEECC
T ss_conf 654214789999999987788999999999999999999998999860766577766-7787888888189998798579
Q ss_pred CCCCCCCCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-------------EEEEEECCCCCCCC
Q ss_conf 99987620137898508809999879999888899998299658771899909-------------29998078879998
Q 000674 606 PELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWIQSG 672 (1358)
Q Consensus 606 ~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g-------------~iayv~Q~~wi~~~ 672 (1358)
.+++.|+|+|+||++++|+.++|||++|||||||+++|+|.++|.+|+|.++| +++||||+|.++++
T Consensus 1088 ~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g 1167 (1321)
T 4f4c_A 1088 ERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC 1167 (1321)
T ss_dssp TSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE
T ss_pred CCCCCCCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHHHEEEECCCCEEECC
T ss_conf 99988212451699889899999899998199999999568638997899999986549999998545998789973272
Q ss_pred CHHHHHHCCC---CCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 8899985299---9998999999998230788821899997412588777895899999999997149989987288888
Q 000674 673 SIRDNILYGK---PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749 (1358)
Q Consensus 673 TireNIlfg~---~~d~~~y~~vi~~c~L~~dl~~lp~GD~T~IGe~g~~LSGGQkqRi~LARAly~~~~i~lLDdp~sa 749 (1358)
||||||.+|. .+++++..++++.|++++.++.||+|.+|.|||+|.||||||||||+||||++++|+|++||||+||
T Consensus 1168 TIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSa 1247 (1321)
T 4f4c_A 1168 SIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSA 1247 (1321)
T ss_dssp EHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCS
T ss_pred CHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 39999745499999999999999998298499971767899982388915699999999999999717998999681115
Q ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCEEEEEECCEEEEECCHHHHHHCCCHHHHHHHHH
Q ss_conf 8999999999999967029969999838810361039699993993889249689986182389999962
Q 000674 750 VDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAH 819 (1358)
Q Consensus 750 lD~~~~~~i~~~~i~~~l~~kT~ilvth~~~~l~~~d~i~~l~~G~i~~~G~~~el~~~~~~~~~l~~~~ 819 (1358)
||+++++.|. +.+....++||+|+|+|+++.+..||+|+||++|+|+|.|+|+||+++++.|.++.+.+
T Consensus 1248 LD~~tE~~Iq-~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~~g~y~~L~~~Q 1316 (1321)
T 4f4c_A 1248 LDTESEKVVQ-EALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKLTQKQ 1316 (1321)
T ss_dssp TTSHHHHHHH-HHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHCC----------
T ss_pred CCHHHHHHHH-HHHHHHCCCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHHHHH
T ss_conf 7899999999-99999739998999606899999699999998989999888899984980999999999
No 5
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=613.10 Aligned_cols=543 Identities=20% Similarity=0.211 Sum_probs=444.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99966879999999999999999999999999984138973245799999999999999999999999999999999999
Q 000674 272 TNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRS 351 (1358)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~rir~ 351 (1358)
++.+++.++...++.++..++..+.|+++..+++....+. +...-+.++..+++..++..++.....+...+.+.++..
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (598)
T 3qf4_B 32 LRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPR-RFDLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVF 110 (598)
T ss_dssp TGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT-CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999999997368-889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999845993468889978999999969999941898-9999999999999999999999968999999999999
Q 000674 352 ALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLIC 430 (1358)
Q Consensus 352 ~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~a~~~L~~~lG~~~l~gl~v~~i~ 430 (1358)
.+...+|+|.++++....++.++|+++|.++.|++++.++.. .+..++..++.++.++++++..-++.+++.++++.+.
T Consensus 111 ~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~ 190 (598)
T 3qf4_B 111 RLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLT 190 (598)
T ss_dssp HHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999997799999768888999999999999999999999999999999999999999999899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99989999999999999999999999999999940999998222999999999999999999999999999999999899
Q 000674 431 GLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMS 510 (1358)
Q Consensus 431 ~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~EiL~~Ik~IK~~awE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~ 510 (1358)
..+...+.+..++.+++..+..+++.+.+.|.++||++||.|+||+.+.++..+.+++..+...+.....+.........
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (598)
T 3qf4_B 191 VLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMV 270 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999737999997487099999999999999999999999999999999999
Q ss_pred HHH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCC
Q ss_conf 999--999999999973898889888999999999989999999999999999999999999984346789600000123
Q 000674 511 PTI--ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISL 588 (1358)
Q Consensus 511 p~l--v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~L~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~~ 588 (1358)
..+ +.+..++++.... +.++++.+++.+.++..+..|+..++..+..+.++.+|.+|+.++++.++..+.. ...+.
T Consensus 271 ~~~~~~~~~~~g~~l~~~-g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~-~~~~~ 348 (598)
T 3qf4_B 271 NNLGFALISGFGGWLALK-DIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDP-DAVEL 348 (598)
T ss_dssp HHHHHHHHHHHHHHHGGG-TSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCS-SCCCC
T ss_pred HHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCC
T ss_conf 999999999999999985-9978999999999999999999999999999999999999999997688777777-77777
Q ss_pred CCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC----------
Q ss_conf 5899848999447972799987620137898508809999879999888899998299658771899909----------
Q 000674 589 QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------- 658 (1358)
Q Consensus 589 ~~~~~~i~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g---------- 658 (1358)
++..+.|+++|.+|+|+. +.++|+|+||++++|+.++|+||+|||||||+++|+|.+++.+|+|.++|
T Consensus 349 ~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~ 426 (598)
T 3qf4_B 349 REVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSS 426 (598)
T ss_dssp CSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHH
T ss_pred CCCCCEEEEEEEEEECCC--CCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEHHHCCHHH
T ss_conf 777771899998997799--986012227998699889998999996999999994585799808999999830188999
Q ss_pred ---EEEEEECCCCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf ---2999807887999888999852999-998999999998230788821899997412588777895899999999997
Q 000674 659 ---SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1358)
Q Consensus 659 ---~iayv~Q~~wi~~~TireNIlfg~~-~d~~~y~~vi~~c~L~~dl~~lp~GD~T~IGe~g~~LSGGQkqRi~LARAl 734 (1358)
+++||+|+|+++++|++|||.+|.+ .++++..++++.++++++++.+|+|++|.+||+|.+||||||||++||||+
T Consensus 427 ~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral 506 (598)
T 3qf4_B 427 LRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAF 506 (598)
T ss_dssp HHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHCEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 98410899079823246399997447999999999999999697888974645323642278898799999999999999
Q ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCEEEEEECCEEEEECCHHHHHHCCCHHHH
Q ss_conf 14998998728888889999999999999670299699998388103610396999939938892496899861823899
Q 000674 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQ 814 (1358)
Q Consensus 735 y~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l~~kT~ilvth~~~~l~~~d~i~~l~~G~i~~~G~~~el~~~~~~~~~ 814 (1358)
+++|++++||||+|+||+++++.+.+ ++....+++|+|++||+++.+..||+|++|++|++++.|+++|+++.++.|.+
T Consensus 507 ~~~p~illlDEpts~LD~~~~~~i~~-~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 585 (598)
T 3qf4_B 507 LANPKILILDEATSNVDTKTEKSIQA-AMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYE 585 (598)
T ss_dssp HTCCSEEEECCCCTTCCHHHHHHHHH-HHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHTTCHHHH
T ss_pred HCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCEEEEECCHHHHHHCCCHHHH
T ss_conf 64999999989766799999999999-99998089989999427789971998999989999987789999867877999
Q ss_pred HHHHHH
Q ss_conf 999622
Q 000674 815 LVNAHR 820 (1358)
Q Consensus 815 l~~~~~ 820 (1358)
+...+.
T Consensus 586 ~~~~~~ 591 (598)
T 3qf4_B 586 LFTSQY 591 (598)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999976
No 6
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=609.59 Aligned_cols=546 Identities=20% Similarity=0.239 Sum_probs=425.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999996687999999999999999999999999998413897324579999999999999999999999999999999
Q 000674 268 RKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGM 347 (1358)
Q Consensus 268 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~ 347 (1358)
++.+++.+++.+++..++.++..++..+.|+++..+++...... .....+.++..+++..++..++.....+...+.+.
T Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (587)
T 3qf4_A 14 LARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARG-DFSLVLKTGILMLIVALIGAVGGIGCTVFASYASQ 92 (587)
T ss_dssp GGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999987369-87999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998459934688899789999999699999418989-99999999999999999999996899999999
Q 000674 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLVL 426 (1358)
Q Consensus 348 rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~-~~~~w~~plqi~~a~~~L~~~lG~~~l~gl~v 426 (1358)
++...+...+|+|.++++....++.++|+++|.++.|++++.++... +..++..++.++.++++++..-...+++.+++
T Consensus 93 ~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~ 172 (587)
T 3qf4_A 93 NFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFL 172 (587)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999788979976588899999999999999999999999999999999999999999989999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q ss_conf 9999999899999999999999999999999999999409999982229999999999----999999999999999999
Q 000674 427 FLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIES----RREKEFKWLSEAQLRKAY 502 (1358)
Q Consensus 427 ~~i~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~EiL~~Ik~IK~~awE~~f~~~i~~----~R~~El~~l~~~~~~~~~ 502 (1358)
+.+...+...+.+...+..++..+..+++.+.++|.++|||+||.|+||+.+.++..+ .|+.+.+..+........
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (587)
T 3qf4_A 173 IPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPL 252 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999985599999862149999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999899999999999999973898889888999999999989999999999999999999999999984346789600
Q 000674 503 GTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDD 582 (1358)
Q Consensus 503 ~~~~~~~~p~lv~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~L~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~ 582 (1358)
..++ .....+.+..++++.... +.++.+.+++.+.++..+..|+..++..+..+.++.+|.+|+.++++.++..++.
T Consensus 253 ~~~~--~~~~~~~vl~~g~~~v~~-g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~ 329 (587)
T 3qf4_A 253 FIFI--VNMGMIAVLWFGGVLVRN-NQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEA 329 (587)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCC
T ss_pred HHHH--HHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9999--999999999999999984-9938999999999999999999999999999999999999999997689765788
Q ss_pred HHCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC----
Q ss_conf 0001235899848999447972799987620137898508809999879999888899998299658771899909----
Q 000674 583 VRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---- 658 (1358)
Q Consensus 583 ~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g---- 658 (1358)
....+.++.++.|+++|.+|+|+.+ +.++|+|+||++++|+.++|+||+|||||||+++|+|.+++.+|+|.++|
T Consensus 330 ~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~ 408 (587)
T 3qf4_A 330 DNALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVR 408 (587)
T ss_dssp TTCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGG
T ss_pred CCCCCCCCCCCCEEEEEEEEECCCC-CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECC
T ss_conf 7765668888807997889984899-976421117998699889998999997999999992786699867989999834
Q ss_pred ---------EEEEEECCCCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf ---------2999807887999888999852999-998999999998230788821899997412588777895899999
Q 000674 659 ---------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1358)
Q Consensus 659 ---------~iayv~Q~~wi~~~TireNIlfg~~-~d~~~y~~vi~~c~L~~dl~~lp~GD~T~IGe~g~~LSGGQkqRi 728 (1358)
+++||+|+|+++++|++|||.+|.+ .+++++.++++.|++.++++.+|+|++|.+||+|.+||||||||+
T Consensus 409 ~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv 488 (587)
T 3qf4_A 409 TVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRL 488 (587)
T ss_dssp GBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHH
T ss_pred CCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCHHHHHCCCCCCCCHHHHHHH
T ss_conf 07899998413897789867675599998524889999999999999684999975653121275189899299999999
Q ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 99999714998998728888889999999999999670299699998388103610396999939938892496899861
Q 000674 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1358)
Q Consensus 729 ~LARAly~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l~~kT~ilvth~~~~l~~~d~i~~l~~G~i~~~G~~~el~~~ 808 (1358)
+||||++++|++++||||+|+||+++++.+.+. +....+++|+|++||+++.+..||+|++|++|++++.|+++|+++.
T Consensus 489 ~lARal~~~p~illlDEpts~LD~~~~~~i~~~-l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 489 SIARALVKKPKVLILDDCTSSVDPITEKRILDG-LKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp HHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHH-HHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 999999729999999797544799999999999-9986799989998227688981998999989989997889999867
Q ss_pred CCHHHHHHHHH
Q ss_conf 82389999962
Q 000674 809 GTAFEQLVNAH 819 (1358)
Q Consensus 809 ~~~~~~l~~~~ 819 (1358)
++.|.++.+.+
T Consensus 568 ~~~~~~~~~~~ 578 (587)
T 3qf4_A 568 CKPYREIYESQ 578 (587)
T ss_dssp CHHHHHHHHHH
T ss_pred CCHHHHHHHHH
T ss_conf 83999999998
No 7
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=1.00 E-value=1 Score=584.58 Aligned_cols=541 Identities=18% Similarity=0.225 Sum_probs=433.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99996687999999999999999999999999998413897324579999999999999999999999999999999999
Q 000674 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMR 350 (1358)
Q Consensus 271 l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~rir 350 (1358)
..+.+++.++...++.++..++..+.|+++..+++...... .....+.++.++++..++..++.....+...+.+.++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (582)
T 3b60_A 19 TIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKT-DRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVV 97 (582)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTST-THHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999884368-65799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998459934688899789999999699999418-98999999999999999999999996899999999999
Q 000674 351 SALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEF-PFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1358)
Q Consensus 351 ~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~-~~~~~~~w~~plqi~~a~~~L~~~lG~~~l~gl~v~~i 429 (1358)
..+...+|+|.++++....++.++|+++|.++.|++++.++ ...+..++..++.+++++++++..-.+.+++.++++.+
T Consensus 98 ~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l 177 (582)
T 3b60_A 98 MTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPI 177 (582)
T ss_dssp HHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999809999978898658999999879999999999999999999999999999999809999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998999999999999999999999999999994099999822299999999----99999999999999999999999
Q 000674 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLI----ESRREKEFKWLSEAQLRKAYGTV 505 (1358)
Q Consensus 430 ~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~EiL~~Ik~IK~~awE~~f~~~i----~~~R~~El~~l~~~~~~~~~~~~ 505 (1358)
...+...+.+...+..++..+..+++.+.+.|.++|+++||.|++|+.+.++. .+.++.+.+..+..........+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (582)
T 3b60_A 178 VSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQL 257 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999996199999837689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHC
Q ss_conf 99899999999999999973898889888999999999989999999999999999999999999984346789600000
Q 000674 506 IYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRR 585 (1358)
Q Consensus 506 ~~~~~p~lv~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~L~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~ 585 (1358)
+...... .+..++++ ++..+.++++.+++.+.++..+..|+..++..+..+.++.++.+|+.+++..++..++. .
T Consensus 258 ~~~~~~~--~~~~~g~~-~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--~ 332 (582)
T 3b60_A 258 IASLALA--FVLYAASF-PSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEG--K 332 (582)
T ss_dssp HHHHHHH--HHHHHHHS-SSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCC--C
T ss_pred HHHHHHH--HHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--C
T ss_conf 9999999--99999999-99849998999999999999999999999999999999999999999997599876677--7
Q ss_pred CCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-------
Q ss_conf 1235899848999447972799987620137898508809999879999888899998299658771899909-------
Q 000674 586 ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------- 658 (1358)
Q Consensus 586 ~~~~~~~~~i~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g------- 658 (1358)
.+.++..+.++++|.+|+|+.+ +.++|+|+|+++++|+.++|+||+|||||||+++|+|.++|.+|+|.++|
T Consensus 333 ~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~ 411 (582)
T 3b60_A 333 RVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYT 411 (582)
T ss_dssp BCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBC
T ss_pred CCCCCCCCCEEEEEEEEECCCC-CCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCC
T ss_conf 7777888847999889973999-974415615997699989998999998999999986106898976979999823069
Q ss_pred ------EEEEEECCCCCCCCCHHHHHHCCC--CCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf ------299980788799988899985299--999899999999823078882189999741258877789589999999
Q 000674 659 ------SIAYVSQTSWIQSGSIRDNILYGK--PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1358)
Q Consensus 659 ------~iayv~Q~~wi~~~TireNIlfg~--~~d~~~y~~vi~~c~L~~dl~~lp~GD~T~IGe~g~~LSGGQkqRi~L 730 (1358)
.++|++|+|+++++|++|||.+|. ..++++++++++.+++++.++.+|+|++|.+||+|.+||||||||++|
T Consensus 412 ~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~i 491 (582)
T 3b60_A 412 LASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAI 491 (582)
T ss_dssp HHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHH
T ss_pred HHHHHHHCEEECCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99999608088068747787899998545999989999999999849799998450411451147988789999999999
Q ss_pred HHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCEEEEEECCEEEEECCHHHHHHCCC
Q ss_conf 99971499899872888888999999999999967029969999838810361039699993993889249689986182
Q 000674 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGT 810 (1358)
Q Consensus 731 ARAly~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l~~kT~ilvth~~~~l~~~d~i~~l~~G~i~~~G~~~el~~~~~ 810 (1358)
|||++++|++++||||+|+||+++.+.+.+ .+....+++|+|++||+++.+..||+|++|++|++++.|+++|+++.++
T Consensus 492 Aral~~~p~illlDEpts~LD~~~~~~i~~-~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 570 (582)
T 3b60_A 492 ARALLRDSPILILDEATSALDTESERAIQA-ALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHG 570 (582)
T ss_dssp HHHHHHCCSEEEEETTTSSCCHHHHHHHHH-HHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTS
T ss_pred HHHHHHCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 999972899899978655579899999999-9999967997999945477898599899997888988458999987698
Q ss_pred HHHHHHHHH
Q ss_conf 389999962
Q 000674 811 AFEQLVNAH 819 (1358)
Q Consensus 811 ~~~~l~~~~ 819 (1358)
.|.++.+.+
T Consensus 571 ~~~~~~~~q 579 (582)
T 3b60_A 571 VYAQLHKMQ 579 (582)
T ss_dssp SHHHHHHHT
T ss_pred HHHHHHHHH
T ss_conf 899999975
No 8
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=1.00 E-value=1 Score=583.06 Aligned_cols=542 Identities=18% Similarity=0.223 Sum_probs=435.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999668799999999999999999999999999841389732457999999999999999999999999999999999
Q 000674 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1358)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~ri 349 (1358)
...+.+++.++...++.++..++..+.|+++..+++...... .....+.++.++++..++..++.....+...+.+.++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (582)
T 3b5x_A 18 TYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNA-ESNFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNV 96 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 998899999999999999999999999999999999986468-6679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999998459934688899789999999699999418-9899999999999999999999999689999999999
Q 000674 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEF-PFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1358)
Q Consensus 350 r~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~-~~~~~~~w~~plqi~~a~~~L~~~lG~~~l~gl~v~~ 428 (1358)
...+...+|+|.++++....++.++|+++|.++.|++++.++ ...+..++..++.+++++++++..-.+.+++.++++.
T Consensus 97 ~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~ 176 (582)
T 3b5x_A 97 VMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAP 176 (582)
T ss_pred HHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999986999997789878999999988999999999999999999999999999999982999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999899999999999999999999999999999409999982229999999----99999999999999999999999
Q 000674 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSL----IESRREKEFKWLSEAQLRKAYGT 504 (1358)
Q Consensus 429 i~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~EiL~~Ik~IK~~awE~~f~~~----i~~~R~~El~~l~~~~~~~~~~~ 504 (1358)
+...+...+.+...+..++..+..+++.+.+.|.++|+++||.|++|+.+.++ ..+.++.+.+..+..........
T Consensus 177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (582)
T 3b5x_A 177 VVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQ 256 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999519999970875999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 99989999999999999997389888988899999999998999999999999999999999999998434678960000
Q 000674 505 VIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVR 584 (1358)
Q Consensus 505 ~~~~~~p~lv~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~L~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~ 584 (1358)
++...... .+..++++.... +.++++.+++.+.++..+..|+..++..+..+.++.++.+|+.++++.++..++.
T Consensus 257 ~~~~~~~~--~i~~~g~~~v~~-g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~-- 331 (582)
T 3b5x_A 257 MIASLALF--AVLFLASVDSIR-AELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNG-- 331 (582)
T ss_pred HHHHHHHH--HHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--
T ss_conf 99999999--999999999985-9988999999999999999999999999999999999999999997589767777--
Q ss_pred CCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC------
Q ss_conf 01235899848999447972799987620137898508809999879999888899998299658771899909------
Q 000674 585 RISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1358)
Q Consensus 585 ~~~~~~~~~~i~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g------ 658 (1358)
..+.++..+.++++|.+|+|+.+ +.++|+|+|+++++|+.++|+||+|||||||+++|+|.++|.+|+|.++|
T Consensus 332 ~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~ 410 (582)
T 3b5x_A 332 KYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDY 410 (582)
T ss_pred CCCCCCCCCEEEEEEEEEECCCC-CCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEHHHC
T ss_conf 77777788828999989972899-86540041699879998999899999799999999657789998798999985638
Q ss_pred -------EEEEEECCCCCCCCCHHHHHHCCC--CCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf -------299980788799988899985299--99989999999982307888218999974125887778958999999
Q 000674 659 -------SIAYVSQTSWIQSGSIRDNILYGK--PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1358)
Q Consensus 659 -------~iayv~Q~~wi~~~TireNIlfg~--~~d~~~y~~vi~~c~L~~dl~~lp~GD~T~IGe~g~~LSGGQkqRi~ 729 (1358)
.++||+|+|+++++|++|||.+|. ..++++++++++.+++++.++.+|+|++|.+||+|.+||||||||++
T Consensus 411 ~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~ 490 (582)
T 3b5x_A 411 KLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVA 490 (582)
T ss_pred CHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHH
T ss_conf 89999648589827990531029999856688999999999999987989999847653345106888847999999999
Q ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 99997149989987288888899999999999996702996999983881036103969999399388924968998618
Q 000674 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1358)
Q Consensus 730 LARAly~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l~~kT~ilvth~~~~l~~~d~i~~l~~G~i~~~G~~~el~~~~ 809 (1358)
||||++++|++++||||+|+||+++.+.+.+ .+....+++|+|++||+++.+..||+|++|++|++++.|+++|+++.+
T Consensus 491 iAral~~~p~illlDEpts~LD~~~~~~i~~-~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 569 (582)
T 3b5x_A 491 IARALLRDAPVLILDEATSALDTESERAIQA-ALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQD 569 (582)
T ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 9999974999999978544689999999999-999972899899993688999819989999899899977899998488
Q ss_pred CHHHHHHHHH
Q ss_conf 2389999962
Q 000674 810 TAFEQLVNAH 819 (1358)
Q Consensus 810 ~~~~~l~~~~ 819 (1358)
+.|.++.+.+
T Consensus 570 ~~~~~~~~~q 579 (582)
T 3b5x_A 570 GAYAQLHRIQ 579 (582)
T ss_pred CHHHHHHHHH
T ss_conf 5899999986
No 9
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=1.00 E-value=1 Score=581.97 Aligned_cols=544 Identities=20% Similarity=0.211 Sum_probs=422.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999668799999999999999999999999999841389-7324-5799999999999999999999999999999999
Q 000674 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRG-EENL-QEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMR 348 (1358)
Q Consensus 271 l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~-~~~~-~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~r 348 (1358)
+.+.+++.++...++.++..++..+.|+++..+++..... .... ..-+.++..+++..++..++.....+...+.+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (595)
T 2yl4_A 13 LAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQR 92 (595)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98878999999999999999999999999999999997357402667999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999998459934688899789999999699999418-989999999999999999999999968999999999
Q 000674 349 MRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEF-PFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLF 427 (1358)
Q Consensus 349 ir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~-~~~~~~~w~~plqi~~a~~~L~~~lG~~~l~gl~v~ 427 (1358)
+...+...+|+|.++++....++.++|+++|.++.|++++.++ ...+..++..++.+++++++++..-.+.+++.++++
T Consensus 93 ~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~ 172 (595)
T 2yl4_A 93 IVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVV 172 (595)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999998199999777984889999999999999999999999999999999999999998199999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999998999999999999999999999999999994099999822299999999----999999999999999999999
Q 000674 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLI----ESRREKEFKWLSEAQLRKAYG 503 (1358)
Q Consensus 428 ~i~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~EiL~~Ik~IK~~awE~~f~~~i----~~~R~~El~~l~~~~~~~~~~ 503 (1358)
.+...+...+.+...+..++..+..++..+.+.|.++||++||.|++|+.+.++. .+.++.+.+..+.........
T Consensus 173 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (595)
T 2yl4_A 173 PPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGAT 252 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999811999998375699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 99998999999999999999738988898889999999999899999999999999999999999999843467896000
Q 000674 504 TVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV 583 (1358)
Q Consensus 504 ~~~~~~~p~lv~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~L~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~ 583 (1358)
.++... ..+.+..++++.... +.++++.+++.+.+...+..|+..++..+..+.++.++.+|+.++++.++..++..
T Consensus 253 ~~~~~~--~~~~~~~~g~~~v~~-g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~ 329 (595)
T 2yl4_A 253 GLSGNL--IVLSVLYKGGLLMGS-AHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNE 329 (595)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHT-TSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSSC
T ss_pred HHHHHH--HHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 999999--999999999999986-99789999999999999999999999999999999999999999983897667777
Q ss_pred HCCCCCCCCCC-EEEEEEEEEECCCCCCCCCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC----
Q ss_conf 00123589984-8999447972799987620137898508809999879999888899998299658771899909----
Q 000674 584 RRISLQKSDRS-VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---- 658 (1358)
Q Consensus 584 ~~~~~~~~~~~-i~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g---- 658 (1358)
...+.++..+. ++++|.+|+|+.+++.++|+|+||++++|+.++|+||+|||||||+++|+|.++|.+|+|.++|
T Consensus 330 ~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~ 409 (595)
T 2yl4_A 330 GVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIR 409 (595)
T ss_dssp SBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETT
T ss_pred CCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEHH
T ss_conf 87777678998389998899858998881201127998499889998999997999999982585789837999999811
Q ss_pred ---------EEEEEECCCCCCCCCHHHHHHCCCC----CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf ---------2999807887999888999852999----998999999998230788821899997412588777895899
Q 000674 659 ---------SIAYVSQTSWIQSGSIRDNILYGKP----MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1358)
Q Consensus 659 ---------~iayv~Q~~wi~~~TireNIlfg~~----~d~~~y~~vi~~c~L~~dl~~lp~GD~T~IGe~g~~LSGGQk 725 (1358)
+++||+|+|+++++|++|||.+|.+ .++++++++++.+++++.++.+|+|++|.+||+|.+||||||
T Consensus 410 ~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~ 489 (595)
T 2yl4_A 410 QLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQK 489 (595)
T ss_dssp TBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHH
T ss_pred HCCHHHHHHCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHH
T ss_conf 17999997322898368832687799998405877665689999999998697999974732013501688786899999
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCEEEEEECCEEEEECCHHHH
Q ss_conf 99999999714998998728888889999999999999670299699998388103610396999939938892496899
Q 000674 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQEL 805 (1358)
Q Consensus 726 qRi~LARAly~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l~~kT~ilvth~~~~l~~~d~i~~l~~G~i~~~G~~~el 805 (1358)
||++||||++++|++++||||+|+||+++.+.+.+ .+....+++|+|++||+++.+..||+|++|++|++++.|+++|+
T Consensus 490 qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~-~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 568 (595)
T 2yl4_A 490 QRIAIARALLKNPKILLLDEATSALDAENEYLVQE-ALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEEL 568 (595)
T ss_dssp HHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHH-HHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC-
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHCCCEEEEEECCEEEEECCHHHH
T ss_conf 99999999975999999988666899899999999-99999659979999468789975998999989989997889999
Q ss_pred HHC-CCHHHHHHHH
Q ss_conf 861-8238999996
Q 000674 806 LLA-GTAFEQLVNA 818 (1358)
Q Consensus 806 ~~~-~~~~~~l~~~ 818 (1358)
++. ++.|.++.+.
T Consensus 569 ~~~~~~~~~~~~~~ 582 (595)
T 2yl4_A 569 LSKPNGIYRKLMNK 582 (595)
T ss_dssp -----C--------
T ss_pred HHCCCHHHHHHHHH
T ss_conf 74787299999997
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=532.39 Aligned_cols=543 Identities=19% Similarity=0.232 Sum_probs=390.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 966879999999999999999999999999984138973--2-4579999999999999999999999999999999999
Q 000674 274 VYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEE--N-LQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMR 350 (1358)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~--~-~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~rir 350 (1358)
..|+.+++..++.++..++..+.|+++..+++....... . ......++..+++..++..++.....+...+.+.++.
T Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~ 781 (1284)
T 3g5u_A 702 TEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILT 781 (1284)
T ss_dssp HTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 15799999999999999999999999999999985568503367799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q ss_conf 999999999984599346--88899789999999699999418989-99999999999999999999---9968999999
Q 000674 351 SALMVAVYQKQLKLSSLG--RKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFG---VVGLGALPGL 424 (1358)
Q Consensus 351 ~~l~~~iy~K~L~ls~~~--~~~~~~G~ivNlms~D~~~i~~~~~~-~~~~w~~plqi~~a~~~L~~---~lG~~~l~gl 424 (1358)
..+...+|+|.++.+-.- ..++++|+++|.++.|++.+.+.... +..+....+.++.++++++. .+++.+++.+
T Consensus 782 ~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~ 861 (1284)
T 3g5u_A 782 KRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIV 861 (1284)
T ss_dssp HHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999839988875789988999999999999999999999999999999999999999999699999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999989999999999999999999999999999940999998222999999999999999999999999999999
Q 000674 425 VLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGT 504 (1358)
Q Consensus 425 ~v~~i~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~EiL~~Ik~IK~~awE~~f~~~i~~~R~~El~~l~~~~~~~~~~~ 504 (1358)
++++ .+.....+...+...+..+..++..+...|.++|+++||.+++|+.+.++..+.-+...+...+.....+...
T Consensus 862 p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 938 (1284)
T 3g5u_A 862 PIIA---IAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITF 938 (1284)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999---9999999999999999999999999999999988999998465999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCC
Q ss_conf 999899999-9999999999738988898889999999999899999999999999999999999999843467-89600
Q 000674 505 VIYWMSPTI-ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHE-LNNDD 582 (1358)
Q Consensus 505 ~~~~~~p~l-v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~L~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e-~~~~~ 582 (1358)
.+......+ ...+.+.+..++..+.++.+.++..+..+.....|+..+......+.++..+.+|+.+++..++ .++..
T Consensus 939 ~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~ 1018 (1284)
T 3g5u_A 939 SFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYS 1018 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99999999999999999999999098069999999999999999999999999999999999999999983887666655
Q ss_pred HHCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC----
Q ss_conf 0001235899848999447972799987620137898508809999879999888899998299658771899909----
Q 000674 583 VRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---- 658 (1358)
Q Consensus 583 ~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g---- 658 (1358)
....++....+.++++|.+|+|+..++.++|+|+||++++|+.++|+|++|||||||+++|.|.+++.+|+|.++|
T Consensus 1019 ~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~ 1098 (1284)
T 3g5u_A 1019 TQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIK 1098 (1284)
T ss_dssp SSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTT
T ss_pred CCCCCCCCCCCCEEEEEEEEECCCCCCCEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECC
T ss_conf 56654567778579999899779999870020305997699889998899997899999994686789977989999800
Q ss_pred ---------EEEEEECCCCCCCCCHHHHHHCCCC---CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf ---------2999807887999888999852999---9989999999982307888218999974125887778958999
Q 000674 659 ---------SIAYVSQTSWIQSGSIRDNILYGKP---MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1358)
Q Consensus 659 ---------~iayv~Q~~wi~~~TireNIlfg~~---~d~~~y~~vi~~c~L~~dl~~lp~GD~T~IGe~g~~LSGGQkq 726 (1358)
+++||||+|.++++||+|||.+|.+ .++++..++++.+.+++.++.+|+|.+|.+||+|.+|||||||
T Consensus 1099 ~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Q 1178 (1284)
T 3g5u_A 1099 QLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQ 1178 (1284)
T ss_dssp SSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHH
T ss_pred CCCHHHHHHCEEEECCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 07899997026898778740666699997466877899999999999983959999727042456117888933899999
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCEEEEEECCEEEEECCHHHHH
Q ss_conf 99999997149989987288888899999999999996702996999983881036103969999399388924968998
Q 000674 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806 (1358)
Q Consensus 727 Ri~LARAly~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l~~kT~ilvth~~~~l~~~d~i~~l~~G~i~~~G~~~el~ 806 (1358)
|++||||++++|+|++||||+|+||+++.+.+.+ .+....+++|+|+|||+++.+..||+|++|++|+|++.|+++|++
T Consensus 1179 rv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~-~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~ 1257 (1284)
T 3g5u_A 1179 RIAIARALVRQPHILLLDEATSALDTESEKVVQE-ALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLL 1257 (1284)
T ss_dssp HHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHH-HHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHH
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCEEEEECCHHHHH
T ss_conf 9999999974999999868755579999999999-999867999899995587999809989999899899977899998
Q ss_pred HCCCHHHHHHHHHH
Q ss_conf 61823899999622
Q 000674 807 LAGTAFEQLVNAHR 820 (1358)
Q Consensus 807 ~~~~~~~~l~~~~~ 820 (1358)
+.++.|.++.+.+.
T Consensus 1258 ~~~g~y~~l~~~q~ 1271 (1284)
T 3g5u_A 1258 AQKGIYFSMVSVQA 1271 (1284)
T ss_dssp HSCSHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHH
T ss_conf 47777999999976
Done!