Query 000676
Match_columns 1357
No_of_seqs 202 out of 207
Neff 3.9
Searched_HMMs 29240
Date Tue Mar 26 15:51:10 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000676.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_450-454//hhsearch_pdb/000676hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fl7_A Ephrin receptor; ATP-bi 1.0 1 1 45.7 3.6 36 796-833 265-302 (536)
2 3u3p_A Tumor necrosis factor r 1.0 1 1 36.4 3.2 34 796-830 27-69 (313)
3 3me4_A Tumor necrosis factor r 1.0 1 1 35.6 2.9 67 791-862 42-119 (216)
4 2e4u_A Metabotropic glutamate 1.0 1 1 35.6 0.5 40 793-836 484-532 (555)
5 2uwi_A CRME protein; receptor, 1.0 1 1 35.3 3.1 64 793-862 15-89 (142)
6 1jma_B Herpesvirus entry media 1.0 1 1 35.2 3.4 64 794-862 15-89 (167)
7 2hey_R Tumor necrosis factor r 1.0 1 1 34.9 2.1 62 795-862 19-91 (146)
8 4fhq_A Tumor necrosis factor r 1.0 1 1 34.9 2.1 63 795-862 18-91 (134)
9 3tje_F Tumor necrosis factor r 1.0 1 1 34.3 2.6 64 795-863 44-120 (156)
10 1ext_A Tumor necrosis factor r 1.0 1 1 33.6 2.5 64 794-862 19-94 (162)
No 1
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Probab=1.00 E-value=1 Score=45.71 Aligned_cols=36 Identities=25% Similarity=0.571 Sum_probs=30.0
Q ss_pred CCCCCCCC--CCCCEECCCCCEECCCCCCCCCCCCCCCCC
Q ss_conf 78999876--311014899950023699998721289999
Q 000676 796 KACPRGLY--GVFCEECPVGTFKNVSGSDRALCRNCSSNE 833 (1357)
Q Consensus 796 ~~CP~G~~--G~fC~eCP~GtYKn~~Gs~~~~C~pCp~~~ 833 (1357)
=.|.+||. +--|+.||.|+||...+ ...|.|||.+.
T Consensus 265 C~C~~G~e~~~~~C~aC~~g~~k~~~~--~~~C~~CP~~S 302 (536)
T 3fl7_A 265 CLCQAGYEKVEDACQACSPGFFKFEAS--ESPCLECPEHT 302 (536)
T ss_dssp CEECTTEEEETTEEEECCTTEECCSCC--SSCCEECCSSE
T ss_pred EECCCCCCCCCCEEEECCCCCCCCCCC--CCCCCCCCCCC
T ss_conf 766676446996554258998766678--98500688877
No 2
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A 3u3s_A 3u3t_A 3u3v_A 3qo4_A
Probab=1.00 E-value=1 Score=36.38 Aligned_cols=34 Identities=41% Similarity=0.965 Sum_probs=16.6
Q ss_pred CCCCCCCC---------CCCCEECCCCCEECCCCCCCCCCCCCC
Q ss_conf 78999876---------311014899950023699998721289
Q 000676 796 KACPRGLY---------GVFCEECPVGTFKNVSGSDRALCRNCS 830 (1357)
Q Consensus 796 ~~CP~G~~---------G~fC~eCP~GtYKn~~Gs~~~~C~pCp 830 (1357)
..||+|+| ...|++||.|+|++... ....|.+|.
T Consensus 27 ~~CpPGtyv~~~Ct~~~dt~C~pCp~GtYt~~~N-~~~~C~~C~ 69 (313)
T 3u3p_A 27 DKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHEN-GIEKCHDCS 69 (313)
T ss_dssp ECBCTTEEEEECCBTTBCCEEEECCTTEECCSCB-CCSSCEECC
T ss_pred CCCCCCCEECCCCCCCCCCCCCCCCCCCEECCCC-CCCCCCCCC
T ss_conf 8979993266767899997431699985602688-788081446
No 3
>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl, rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP signaling protein; 2.01A {Mus musculus} PDB: 3me2_R 3qbq_B 4giq_R* 3nzy_B
Probab=1.00 E-value=1 Score=35.59 Aligned_cols=67 Identities=13% Similarity=0.276 Sum_probs=39.4
Q ss_pred CEEECCCCCCCCC---------CCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCEECCCCC--CCCCCCCCCCCCC
Q ss_conf 4486578999876---------3110148999500236999987212899999997311113586--3478899643588
Q 000676 791 GTVTGKACPRGLY---------GVFCEECPVGTFKNVSGSDRALCRNCSSNELPHRALYIPIRGG--VTECPCPYKCVSE 859 (1357)
Q Consensus 791 GTi~g~~CP~G~~---------G~fC~eCP~GtYKn~~Gs~~~~C~pCp~~~lp~ra~~iy~~gG--~~~~~Cpy~C~sd 859 (1357)
+..-=+.||||+| ...|++||.|+|....+ ....|++|.. -.....++.++.. ...+.| .|.++
T Consensus 42 ~~~CC~~CppG~~~~~~Ct~~~~t~C~pC~~gtY~~~~n-~~~~C~~C~~--C~~~~~~~~~~~Ct~t~dtvC--~C~~G 116 (216)
T 3me4_A 42 LGRCCSRCEPGKYLSSKCTPTSDSVCLPCGPDEYLDTWN-EEDKCLLHKV--CDAGKALVAVDPGNHTAPRRC--ACTAG 116 (216)
T ss_dssp TTEEEECBCTTEEEEECCBTTBCCEEEECCTTEECCSSB-CCSSCEECCC--CCGGGTEEEESTTCSSSCCEE--EECTT
T ss_pred CCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCEECCCC-CCCCCCCCCC--CCCCCCEEEEECCCCCCCCCC--CCCCC
T ss_conf 788868999895563568999998203289997625789-8876978888--788757688724778888502--58799
Q ss_pred CCC
Q ss_conf 766
Q 000676 860 RYH 862 (1357)
Q Consensus 860 k~~ 862 (1357)
+|.
T Consensus 117 ~y~ 119 (216)
T 3me4_A 117 YHW 119 (216)
T ss_dssp EEE
T ss_pred EEC
T ss_conf 470
No 4
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=1.00 E-value=1 Score=35.55 Aligned_cols=40 Identities=18% Similarity=0.457 Sum_probs=30.0
Q ss_pred EECCCCCCCCCC---------CCCEECCCCCEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 865789998763---------11014899950023699998721289999999
Q 000676 793 VTGKACPRGLYG---------VFCEECPVGTFKNVSGSDRALCRNCSSNELPH 836 (1357)
Q Consensus 793 i~g~~CP~G~~G---------~fC~eCP~GtYKn~~Gs~~~~C~pCp~~~lp~ 836 (1357)
+-...||||+.. +-|.+||.|.+. + |...|.+||.++-|+
T Consensus 484 ~CS~~C~pG~rk~~~~g~~CC~~C~~C~~~~~~--t--d~~~C~~Cp~~~wpn 532 (555)
T 2e4u_A 484 QCSDPCAPNEMKNMQPGDVCCWICIPCEPYEYL--V--DEFTCMDCGPGQWPT 532 (555)
T ss_dssp CSSCCCCTTTEEEECCSSSSCCEEEECCTTEEE--E--ETTEEEECCTTEEEC
T ss_pred EECCCCCCCEEEEECCCCEEEEECCCCCCCEEC--C--CCCCCEECCCCCCCC
T ss_conf 317977998055405897368978657775003--7--786644688323769
No 5
>2uwi_A CRME protein; receptor, poxvirus TNF receptor, receptor immunomodulator, TNF alpha receptor; 2.0A {Vaccinia virus}
Probab=1.00 E-value=1 Score=35.26 Aligned_cols=64 Identities=25% Similarity=0.569 Sum_probs=40.8
Q ss_pred EECCCCCCCCC---------CCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCEECCCC--CCCCCCCCCCCCCCCC
Q ss_conf 86578999876---------311014899950023699998721289999999731111358--6347889964358876
Q 000676 793 VTGKACPRGLY---------GVFCEECPVGTFKNVSGSDRALCRNCSSNELPHRALYIPIRG--GVTECPCPYKCVSERY 861 (1357)
Q Consensus 793 i~g~~CP~G~~---------G~fC~eCP~GtYKn~~Gs~~~~C~pCp~~~lp~ra~~iy~~g--G~~~~~Cpy~C~sdk~ 861 (1357)
.-=+.||||++ ..-|++||.|+|.+... ....|.+|..-. ....+.++. ....+.| .|.+++|
T Consensus 15 ~cC~~CppG~~~~~~C~~~~~t~C~pC~~gty~~~~n-~~~~C~~C~~C~---~~~~~~~~~Ct~t~dtvC--~C~~G~y 88 (142)
T 2uwi_A 15 KCCKLCKPGTYSDHRCDKYSDTICGHCPSDTFTSIYN-RSPWCHSCRGPC---GTNRVEVTPCTPTTNRIC--HCDSNSY 88 (142)
T ss_dssp EEEECBCTTEEEEECCCSSCCCEEEECCTTEECCSSB-CCSSCEECCCCC---CTTEEEEECCBTTBCCEE--EECTTEE
T ss_pred CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCC---CCCEEEEECCCCCCCCEE--ECCCCCE
T ss_conf 8887898897467668899897567589997745689-898467876705---688567615989879981--1899968
Q ss_pred C
Q ss_conf 6
Q 000676 862 H 862 (1357)
Q Consensus 862 ~ 862 (1357)
.
T Consensus 89 c 89 (142)
T 2uwi_A 89 C 89 (142)
T ss_dssp E
T ss_pred E
T ss_conf 5
No 6
>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR superfamily, viral protein; HET: NAG; 2.65A {Human herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*
Probab=1.00 E-value=1 Score=35.19 Aligned_cols=64 Identities=22% Similarity=0.502 Sum_probs=39.8
Q ss_pred ECCCCCCCCC---------CCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCC-CCEECCC-CCCCCCCCCCCCCCCCCC
Q ss_conf 6578999876---------3110148999500236999987212899999997-3111135-863478899643588766
Q 000676 794 TGKACPRGLY---------GVFCEECPVGTFKNVSGSDRALCRNCSSNELPHR-ALYIPIR-GGVTECPCPYKCVSERYH 862 (1357)
Q Consensus 794 ~g~~CP~G~~---------G~fC~eCP~GtYKn~~Gs~~~~C~pCp~~~lp~r-a~~iy~~-gG~~~~~Cpy~C~sdk~~ 862 (1357)
.=+.||+|+| ...|++||.|+|.+..+ ....|.+|.. -+.. ..++... .....+.| .|.+++|.
T Consensus 15 ~C~~CppG~~~~~~C~~~~~t~C~~Cp~GtY~~~~n-~~~~C~~C~~--C~~~~g~~~~~~Ct~t~~t~C--~C~~G~y~ 89 (167)
T 1jma_B 15 CCPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLN-GLSKCLQCQM--CDPAMGLRASRNCSRTENAVC--GCSPGHFC 89 (167)
T ss_dssp CCBCBCTTEEEEECCCSSSCCEEEECCTTEECSSCB-CSSCCEECCC--CCTTTTEEEEECCCSSSCCEE--EECTTEEE
T ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC--CCCCCCEEEECCCCCCCCCCC--CCCCCCEE
T ss_conf 888889998765678999998577298995136667-6763648744--566788688556788888700--38999652
No 7
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine, receptor-ligan complex, CO-stimulator, TNFSF; 2.00A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 2hev_R
Probab=1.00 E-value=1 Score=34.94 Aligned_cols=62 Identities=19% Similarity=0.401 Sum_probs=36.4
Q ss_pred CCCCCCCCC---------CCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCC-CCEECCCC-CCCCCCCCCCCCCCCCC
Q ss_conf 578999876---------3110148999500236999987212899999997-31111358-63478899643588766
Q 000676 795 GKACPRGLY---------GVFCEECPVGTFKNVSGSDRALCRNCSSNELPHR-ALYIPIRG-GVTECPCPYKCVSERYH 862 (1357)
Q Consensus 795 g~~CP~G~~---------G~fC~eCP~GtYKn~~Gs~~~~C~pCp~~~lp~r-a~~iy~~g-G~~~~~Cpy~C~sdk~~ 862 (1357)
=+.||+|.| ...|++||.|+|.+..+. ..|++|..= +.. ..++...- ....+.| .|.+++|.
T Consensus 19 C~~C~pG~~~~~~Ct~~~~t~C~~C~~gty~~~~~~--~~C~~C~~C--~~~~g~~~~~~Ct~t~dt~C--~C~~G~y~ 91 (146)
T 2hey_R 19 CHECRPGNGMVSRCSRSQNTVCRPCGPGFYNDVVSS--KPCKPCTWC--NLRSGSERKQLCTATQDTVC--RCRAGTQP 91 (146)
T ss_dssp EECBCTTEEEEECCCSSCCCEEEECCTTEECCSCBS--SCCEECCCC--CGGGTEEEEECCBTTBCCEE--EECTTEEE
T ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCCCCEECCCCC--CCCCCCCCC--CCCCCCEEECCCCCCCCCCC--CCCCCEEE
T ss_conf 989898970405578998987554999888788888--748666878--87778367616766778644--47787060
No 8
>4fhq_A Tumor necrosis factor receptor superfamily member; cysteine rich domain, TNF receptor, structural genomics, PSI protein structure initiative; 2.25A {Homo sapiens} PDB: 2aw2_B*
Probab=1.00 E-value=1 Score=34.87 Aligned_cols=63 Identities=22% Similarity=0.481 Sum_probs=38.8
Q ss_pred CCCCCCCCC---------CCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCEECCCCC--CCCCCCCCCCCCCCCC
Q ss_conf 578999876---------3110148999500236999987212899999997311113586--3478899643588766
Q 000676 795 GKACPRGLY---------GVFCEECPVGTFKNVSGSDRALCRNCSSNELPHRALYIPIRGG--VTECPCPYKCVSERYH 862 (1357)
Q Consensus 795 g~~CP~G~~---------G~fC~eCP~GtYKn~~Gs~~~~C~pCp~~~lp~ra~~iy~~gG--~~~~~Cpy~C~sdk~~ 862 (1357)
=+.||||++ ...|++||.|+|.+... ....|++|.. -......+.++.. ...+.|. |.+++|-
T Consensus 18 C~~CppG~~~~~~C~~~~~t~C~pC~~gtys~~~n-~~~~C~~C~~--C~~~~g~~~~~~CT~t~dtvC~--C~~G~~c 91 (134)
T 4fhq_A 18 CPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLN-GLSKCLQCQM--CDPAMGLRASRNCSRTENAVCG--CSPGHFC 91 (134)
T ss_dssp EECBCTTEEEEECCC--CCCEEEECCTTEECCSCB-CCSSCEECCC--CCGGGTEEEEECCCSSSCCEEE--ECTTEEE
T ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCCCCEECCCC-CCCCCCCCCC--CCCCCCEEEECCCCCCCCCCCC--CCCCCEE
T ss_conf 87999797754237999998133899987744788-8883867798--8856796786057787895636--9999886
No 9
>3tje_F Tumor necrosis factor receptor superfamily member; agonistic antibody, FAB fragment, antibody-receptor complex, cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo sapiens} PDB: 3thm_F*
Probab=1.00 E-value=1 Score=34.26 Aligned_cols=64 Identities=19% Similarity=0.370 Sum_probs=32.0
Q ss_pred CCCCCCCCC----------CCCCEECCCC-CEECCCCCCCCCCCCCCCCCCCCCCCEECCCC--CCCCCCCCCCCCCCCC
Q ss_conf 578999876----------3110148999-50023699998721289999999731111358--6347889964358876
Q 000676 795 GKACPRGLY----------GVFCEECPVG-TFKNVSGSDRALCRNCSSNELPHRALYIPIRG--GVTECPCPYKCVSERY 861 (1357)
Q Consensus 795 g~~CP~G~~----------G~fC~eCP~G-tYKn~~Gs~~~~C~pCp~~~lp~ra~~iy~~g--G~~~~~Cpy~C~sdk~ 861 (1357)
=..||||+| ...|++||.| +|..... ....|.+|.. -........++. ....+.| .|.+++|
T Consensus 44 C~~CppG~~v~~~Ct~~~~~t~C~pC~~g~ty~~~~n-~~~~C~~C~~--C~~~~g~~~~~~CT~t~dtvC--~C~~G~f 118 (156)
T 3tje_F 44 HKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAH-FSSKCRRCRL--CDEGHGLEVEINCTRTQNTKC--RCKPNFF 118 (156)
T ss_dssp SSCBCTTEEESSCCCSSSCCCCEEECCTTTEECSSCB-SCSCCEECCC--CCGGGTEEEEECCBTTBCCEE--EECTTEE
T ss_pred CCCCCCCCEECCCCCCCCCCCCCEECCCCCEEECCCC-CCCCCCCCCC--CCCCCCEEEECCCCCCCCCEE--ECCCCCE
T ss_conf 8889989717776889998976503989870403689-8772757887--788844478646647789711--2899987
Q ss_pred CC
Q ss_conf 69
Q 000676 862 HM 863 (1357)
Q Consensus 862 ~~ 863 (1357)
-.
T Consensus 119 c~ 120 (156)
T 3tje_F 119 CN 120 (156)
T ss_dssp CC
T ss_pred EC
T ss_conf 68
No 10
>1ext_A Tumor necrosis factor receptor; binding protein, cytokine, signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R
Probab=1.00 E-value=1 Score=33.56 Aligned_cols=64 Identities=23% Similarity=0.528 Sum_probs=35.0
Q ss_pred ECCCCCCCCC----------CCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCEECCCC--CCCCCCCCCCCCCCCC
Q ss_conf 6578999876----------311014899950023699998721289999999731111358--6347889964358876
Q 000676 794 TGKACPRGLY----------GVFCEECPVGTFKNVSGSDRALCRNCSSNELPHRALYIPIRG--GVTECPCPYKCVSERY 861 (1357)
Q Consensus 794 ~g~~CP~G~~----------G~fC~eCP~GtYKn~~Gs~~~~C~pCp~~~lp~ra~~iy~~g--G~~~~~Cpy~C~sdk~ 861 (1357)
-=+.||+|+| ...|++||.|+|.+..+. ...|++|..= ......+..+. ....+.| .|.+++|
T Consensus 19 CC~~CppG~~~~~~Ct~~~~~t~C~~C~~gty~~~~n~-~~~C~~C~~C--~~~~~~~~~~~Ct~t~dt~C--~C~~G~y 93 (162)
T 1ext_A 19 CCTKCHKGTYLYNDCPGPGQDTDCRECESGSFTASENH-LRHCLSCSKC--RKEMGQVEISSCTVDRDTVC--GCRKNQY 93 (162)
T ss_dssp EEECBCTTEEEEECCSSTTSCCEEEECCTTEECCSSBC-CSSCEECCCC--CGGGTCEEEECCBTTBCCEE--ECCTTEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC--CCCCCEEEEECCCCCCCCCC--CCCCCCE
T ss_conf 99889998604566678888961333989865146677-7755243788--77789788713668888786--5989852
Q ss_pred C
Q ss_conf 6
Q 000676 862 H 862 (1357)
Q Consensus 862 ~ 862 (1357)
.
T Consensus 94 ~ 94 (162)
T 1ext_A 94 R 94 (162)
T ss_dssp E
T ss_pred E
T ss_conf 4
Done!