BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000679
(1355 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 117/258 (45%), Gaps = 21/258 (8%)
Query: 158 FDSRMKIFQNIMEVLKDTN--VGMIGVYGVNGVGKTTLVKQIA--MQVIEDKLFDKVVFV 213
F +R K+ I + L N G + +YG+ G GK+ L + ++E V +V
Sbjct: 126 FVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWV 185
Query: 214 EVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNLD 273
+ + D + KL +L + Q E+ QR + K+ RVL++ + LL LD
Sbjct: 186 SIGKQ-DKSGLLMKLQ-NLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILD 243
Query: 274 AVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCNDMNSQKFFLIEV-LSYEEAWCLFEKI 332
V P+ V K ++ +C +LLT+R++ V + M + +E L E+ +
Sbjct: 244 DVWDPW--VLKAFDN---QCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLF 298
Query: 333 VGDSAKASDFRVIADEIVRRCGGLPVAIKTIANALK---NKRLY----VWNDSLERLRNS 385
V + K D A I++ C G P+ + I L+ N+ Y + N +R+R S
Sbjct: 299 V--NMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKS 356
Query: 386 TSRQIHGMEENVYSSIEL 403
+S ++E + S+E+
Sbjct: 357 SSYDYEALDEAMSISVEM 374
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 118/285 (41%), Gaps = 44/285 (15%)
Query: 136 GTVSFRPTVERTTPVSYTAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVK 195
G V RP V T A +Q S++K G + ++G+ G GK+ L
Sbjct: 117 GGVPQRPVVFVTRKKLVNAIQQKLSKLK-----------GEPGWVTIHGMAGCGKSVLAA 165
Query: 196 QIA--MQVIEDKLFDKVVFVEVTQTPD------LQTIQNKLSSDLELEFKQNENVFQRAE 247
+ ++E V +V V + LQ + +L D + N+ + +
Sbjct: 166 EAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKD 225
Query: 248 KLR-QRLKNVKRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLC 306
+LR L+ R L+ILD++W L A S+C +LLT+R++ V
Sbjct: 226 RLRILMLRKHPRSLLILDDVWDSWVLKAFD--------------SQCQILLTTRDKSVTD 271
Query: 307 NDMNSQKFFLIEV-LSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIAN 365
+ M + +E L E+ + V + K +D A I++ C G P+ + I
Sbjct: 272 SVMGPKYVVPVESSLGKEKGLEILSLFV--NMKKADLPEQAHSIIKECKGSPLVVSLIGA 329
Query: 366 ALK---NKRLY----VWNDSLERLRNSTSRQIHGMEENVYSSIEL 403
L+ N+ Y + N +R+R S+S ++E + S+E+
Sbjct: 330 LLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEM 374
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 118/285 (41%), Gaps = 44/285 (15%)
Query: 136 GTVSFRPTVERTTPVSYTAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVK 195
G V RP V T A +Q S++K G + ++G+ G GK+ L
Sbjct: 123 GGVPQRPVVFVTRKKLVNAIQQKLSKLK-----------GEPGWVTIHGMAGCGKSVLAA 171
Query: 196 QIA--MQVIEDKLFDKVVFVEVTQTPD------LQTIQNKLSSDLELEFKQNENVFQRAE 247
+ ++E V +V V + LQ + +L D + N+ + +
Sbjct: 172 EAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKD 231
Query: 248 KLR-QRLKNVKRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLC 306
+LR L+ R L+ILD++W L A S+C +LLT+R++ V
Sbjct: 232 RLRILMLRKHPRSLLILDDVWDSWVLKAFD--------------SQCQILLTTRDKSVTD 277
Query: 307 NDMNSQKFFLIEV-LSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIAN 365
+ M + +E L E+ + V + K +D A I++ C G P+ + I
Sbjct: 278 SVMGPKYVVPVESSLGKEKGLEILSLFV--NMKKADLPEQAHSIIKECKGSPLVVSLIGA 335
Query: 366 ALK---NKRLY----VWNDSLERLRNSTSRQIHGMEENVYSSIEL 403
L+ N+ Y + N +R+R S+S ++E + S+E+
Sbjct: 336 LLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEM 380
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 116/258 (44%), Gaps = 21/258 (8%)
Query: 158 FDSRMKIFQNIMEVLKDTN--VGMIGVYGVNGVGKTTLVKQIA--MQVIEDKLFDKVVFV 213
F +R K+ I + L N G + +YG+ G GK+ L + ++E V +V
Sbjct: 133 FVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWV 192
Query: 214 EVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNLD 273
+ + D + KL +L + Q E+ QR + K+ RVL++ + LL LD
Sbjct: 193 SIGKQ-DKSGLLMKLQ-NLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILD 250
Query: 274 AVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCNDMNSQKFFLIEV-LSYEEAWCLFEKI 332
V P+ V K ++ +C +LLT+ ++ V + M + +E L E+ +
Sbjct: 251 DVWDPW--VLKAFDN---QCQILLTTSDKSVTDSVMGPKHVVPVESGLGREKGLEILSLF 305
Query: 333 VGDSAKASDFRVIADEIVRRCGGLPVAIKTIANALK---NKRLY----VWNDSLERLRNS 385
V + K D A I++ C G P+ + I L+ N+ Y + N +R+R S
Sbjct: 306 V--NMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKS 363
Query: 386 TSRQIHGMEENVYSSIEL 403
+S ++E + S+E+
Sbjct: 364 SSYDYEALDEAMSISVEM 381
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 25/135 (18%)
Query: 829 LHEDESFSNLRIIKVGECDKLRHLFSFSMAKNLLRLQKISVFDCKSLEIIVGLDMEKQRT 888
LHE++ ++IIKV LRHL +++N +R +I F+ L + L++ R
Sbjct: 71 LHENQ----IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN--GLANLNTLELFDNRL 124
Query: 889 TLGFNG----------ITTKDDPDEKVI------FPSLEELDLYSLITIEKLWPKQFQGM 932
T NG + +++P E + PSL LDL L + + F+G+
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184
Query: 933 SSCQNLTKVTVAFCD 947
S NL + +A C+
Sbjct: 185 S---NLRYLNLAMCN 196
>pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|B Chain B, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 498
Score = 37.4 bits (85), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 139 SFRPTVERTT-PV--SYTAYEQFDSRMKIFQNIMEVL----KDTNVGMIGVYGVNGVGKT 191
+ RP RTT P+ S A+ Q D+++ IF+ ++V+ G IG++G GVGKT
Sbjct: 120 NLRPVDTRTTSPIHRSAPAFTQLDTKLSIFETGIKVVNLLAPYRRGGKIGLFGGAGVGKT 179
Query: 192 TLVKQI 197
L+ ++
Sbjct: 180 VLIMEL 185
>pdb|4A55|A Chain A, Crystal Structure Of P110alpha In Complex With Ish2 Of
P85alpha And The Inhibitor Pik-108
Length = 1096
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 233 ELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNLDAVGIPFG 280
EL F+ NE +F+ + LRQ + ++ ++ I++NIW+ LD +P+G
Sbjct: 819 ELLFQNNEIIFKNGDDLRQDMLTLQ-IIRIMENIWQNQGLDLRMLPYG 865
>pdb|2RD0|A Chain A, Structure Of A Human P110alpha/p85alpha Complex
Length = 1096
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 233 ELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNLDAVGIPFG 280
EL F+ NE +F+ + LRQ + ++ ++ I++NIW+ LD +P+G
Sbjct: 819 ELLFQNNEIIFKNGDDLRQDMLTLQ-IIRIMENIWQNQGLDLRMLPYG 865
>pdb|3HIZ|A Chain A, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha
Length = 1096
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 233 ELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNLDAVGIPFG 280
EL F+ NE +F+ + LRQ + ++ ++ I++NIW+ LD +P+G
Sbjct: 819 ELLFQNNEIIFKNGDDLRQDMLTLQ-IIRIMENIWQNQGLDLRMLPYG 865
>pdb|3HHM|A Chain A, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha And The Drug Wortmannin
Length = 1091
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 233 ELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNLDAVGIPFG 280
EL F+ NE +F+ + LRQ + ++ ++ I++NIW+ LD +P+G
Sbjct: 814 ELLFQNNEIIFKNGDDLRQDMLTLQ-IIRIMENIWQNQGLDLRMLPYG 860
>pdb|3ZIM|A Chain A, Discovery Of A Potent And Isoform-selective Targeted
Covalent Inhibitor Of The Lipid Kinase Pi3kalpha
Length = 940
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 233 ELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNLDAVGIPFG 280
EL F+ NE +F+ + LRQ + ++ ++ I++NIW+ LD +P+G
Sbjct: 685 ELLFQNNEIIFKNGDDLRQDMLTLQ-IIRIMENIWQNQGLDLRMLPYG 731
>pdb|3TK1|A Chain A, Crystal Structure Of A Meab And Rv1496 Ortholog From
Mycobacterium Thermoresistible Bound To Gdp
pdb|3TK1|B Chain B, Crystal Structure Of A Meab And Rv1496 Ortholog From
Mycobacterium Thermoresistible Bound To Gdp
Length = 330
Score = 34.7 bits (78), Expect = 0.41, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 159 DSRMKIFQNIMEVLKDTNVGM-IGVYGVNGVGKTTLVKQIAMQVIE 203
D R + + ++E++ D M +G+ GV GVGK+T ++ + M +IE
Sbjct: 37 DHRERAQELLLELMPDAGRAMHVGITGVPGVGKSTSIEALGMHLIE 82
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 34.3 bits (77), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 135 FGTVSFRPTVERTTPVSYTAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLV 194
F +S R VER T V Y + K+ E+ K +IG+ G NG+GKTT V
Sbjct: 343 FTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGE---VIGIVGPNGIGKTTFV 399
Query: 195 KQIA 198
K +A
Sbjct: 400 KMLA 403
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 169 MEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIED 204
+ ++KD V +G+ G NG GKTT VK +A Q+I +
Sbjct: 111 LPIVKDGMV--VGIVGPNGTGKTTAVKILAGQLIPN 144
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 135 FGTVSFRPTVERTTPVSYTAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLV 194
F +S R VER T V Y + K+ E+ K +IG+ G NG+GKTT V
Sbjct: 329 FTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGE---VIGIVGPNGIGKTTFV 385
Query: 195 KQIA 198
K +A
Sbjct: 386 KMLA 389
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 169 MEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIED 204
+ ++KD V +G+ G NG GKTT VK +A Q+I +
Sbjct: 97 LPIVKDGMV--VGIVGPNGTGKTTAVKILAGQLIPN 130
>pdb|1WNL|A Chain A, Crystal Structure Of Biotin-(Acetyl-Coa-Carboxylase)
Ligase From Pyrococcus Horikoshii Ot3 In Complex With
Adp
pdb|1WNL|B Chain B, Crystal Structure Of Biotin-(Acetyl-Coa-Carboxylase)
Ligase From Pyrococcus Horikoshii Ot3 In Complex With
Adp
pdb|1WQ7|A Chain A, Crystal Structure Of Biotin-(acetyl-coa-carboxylase)
Ligase From Pyrococcus Horikoshii Ot3
pdb|1WQ7|B Chain B, Crystal Structure Of Biotin-(acetyl-coa-carboxylase)
Ligase From Pyrococcus Horikoshii Ot3
pdb|1WQW|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5-Amp
pdb|1WQW|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5-Amp
pdb|1X01|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Atp
pdb|1X01|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Atp
pdb|2DKG|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-Amp,
Pyrophosphate And Mg(2+)
pdb|2DKG|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-Amp,
Pyrophosphate And Mg(2+)
pdb|2DTH|A Chain A, The Crystal Structure Of The Orthorhombic Form Of Biotin
Protein Ligase From Pyrococcus Horikoshii Ot3 In Complex
With Biotin And Adp
pdb|2DTH|B Chain B, The Crystal Structure Of The Orthorhombic Form Of Biotin
Protein Ligase From Pyrococcus Horikoshii Ot3 In Complex
With Biotin And Adp
pdb|2DTI|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-amp,
Pyrophosphate And Mn(2+)
pdb|2DTI|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-amp,
Pyrophosphate And Mn(2+)
Length = 235
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 15/125 (12%)
Query: 662 DSFSQWEKVEGGSNASLVELKGLSKLTTLEIHIRDARIMPQDLISMKLE---------IF 712
D ++K+ G LVE KG + + +++ + +P SMKLE +F
Sbjct: 104 DVLVNYKKIAG----VLVEGKGDKIVLGIGLNVNNK--VPNGATSMKLELGSEVPLLSVF 157
Query: 713 RMFIGNVVDWYHKFERSRLVKLDKLEKNILLGQGMKMFLKRTEDLYLHDLKGFQNVVHEL 772
R I N+ Y F ++ + L+ + N++LG +K+ + + D+ F ++ L
Sbjct: 158 RSLITNLDRLYLNFLKNPMDILNLVRDNMILGVRVKILGDGSFEGIAEDIDDFGRLIIRL 217
Query: 773 DDGEV 777
D GEV
Sbjct: 218 DSGEV 222
>pdb|2DXU|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Biotinyl-5'-Amp, Mutation R48a
pdb|2DXU|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Biotinyl-5'-Amp, Mutation R48a
pdb|2DZC|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii, Mutation R48a
pdb|2DZC|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii, Mutation R48a
pdb|2EJG|A Chain A, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
pdb|2EJG|B Chain B, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
Length = 235
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 15/125 (12%)
Query: 662 DSFSQWEKVEGGSNASLVELKGLSKLTTLEIHIRDARIMPQDLISMKLE---------IF 712
D ++K+ G LVE KG + + +++ + +P SMKLE +F
Sbjct: 104 DVLVNYKKIAG----VLVEGKGDKIVLGIGLNVNNK--VPNGATSMKLELGSEVPLLSVF 157
Query: 713 RMFIGNVVDWYHKFERSRLVKLDKLEKNILLGQGMKMFLKRTEDLYLHDLKGFQNVVHEL 772
R I N+ Y F ++ + L+ + N++LG +K+ + + D+ F ++ L
Sbjct: 158 RSLITNLDRLYLNFLKNPMDILNLVRDNMILGVRVKILGDGSFEGIAEDIDDFGRLIIRL 217
Query: 773 DDGEV 777
D GEV
Sbjct: 218 DSGEV 222
>pdb|2DVE|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-Amp, Mutation
Arg51ala
pdb|2DVE|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-Amp, Mutation
Arg51ala
pdb|2E10|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii, Mutation R51a
pdb|2E10|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii, Mutation R51a
Length = 235
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 15/125 (12%)
Query: 662 DSFSQWEKVEGGSNASLVELKGLSKLTTLEIHIRDARIMPQDLISMKLE---------IF 712
D ++K+ G LVE KG + + +++ + +P SMKLE +F
Sbjct: 104 DVLVNYKKIAG----VLVEGKGDKIVLGIGLNVNNK--VPNGATSMKLELGSEVPLLSVF 157
Query: 713 RMFIGNVVDWYHKFERSRLVKLDKLEKNILLGQGMKMFLKRTEDLYLHDLKGFQNVVHEL 772
R I N+ Y F ++ + L+ + N++LG +K+ + + D+ F ++ L
Sbjct: 158 RSLITNLDRLYLNFLKNPMDILNLVRDNMILGVRVKILGDGSFEGIAEDIDDFGRLIIRL 217
Query: 773 DDGEV 777
D GEV
Sbjct: 218 DSGEV 222
>pdb|3QZ9|B Chain B, Crystal Structure Of Co-Type Nitrile Hydratase Beta-Y215f
From Pseudomonas Putida.
pdb|3QZ9|D Chain D, Crystal Structure Of Co-Type Nitrile Hydratase Beta-Y215f
From Pseudomonas Putida.
pdb|3QZ9|F Chain F, Crystal Structure Of Co-Type Nitrile Hydratase Beta-Y215f
From Pseudomonas Putida.
pdb|3QZ9|H Chain H, Crystal Structure Of Co-Type Nitrile Hydratase Beta-Y215f
From Pseudomonas Putida
Length = 219
Score = 33.5 bits (75), Expect = 0.81, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 129 LLGTGNFGTVSFRPTVERTTPVSYTAYEQFDSRMKIFQNIM 169
LL GNF FR ++ER P Y ++ + +F+N++
Sbjct: 40 LLANGNFNLDEFRHSIERMGPAHYLEGTYYEHWLHVFENLL 80
>pdb|3QXE|B Chain B, Crystal Structure Of Co-Type Nitrile Hydratase From
Pseudomonas Putida.
pdb|3QXE|D Chain D, Crystal Structure Of Co-Type Nitrile Hydratase From
Pseudomonas Putida.
pdb|3QXE|F Chain F, Crystal Structure Of Co-Type Nitrile Hydratase From
Pseudomonas Putida.
pdb|3QXE|H Chain H, Crystal Structure Of Co-Type Nitrile Hydratase From
Pseudomonas Putida.
pdb|3QZ5|B Chain B, Crystal Structure Of Co-Type Nitrile Hydratase Alpha-E168q
From Pseudomonas Putida.
pdb|3QZ5|D Chain D, Crystal Structure Of Co-Type Nitrile Hydratase Alpha-E168q
From Pseudomonas Putida.
pdb|3QZ5|F Chain F, Crystal Structure Of Co-Type Nitrile Hydratase Alpha-E168q
From Pseudomonas Putida.
pdb|3QZ5|H Chain H, Crystal Structure Of Co-Type Nitrile Hydratase Alpha-E168q
From Pseudomonas Putida
Length = 219
Score = 33.5 bits (75), Expect = 0.81, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 129 LLGTGNFGTVSFRPTVERTTPVSYTAYEQFDSRMKIFQNIM 169
LL GNF FR ++ER P Y ++ + +F+N++
Sbjct: 40 LLANGNFNLDEFRHSIERMGPAHYLEGTYYEHWLHVFENLL 80
>pdb|2DEQ|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-Amp, K111g
Mutation
pdb|2DEQ|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-Amp, K111g
Mutation
pdb|2E1H|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3, K111g Mutation
pdb|2E1H|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3, K111g Mutation
Length = 235
Score = 33.5 bits (75), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
Query: 673 GSNASLVELKGLSKLTTLEIHIRDARIMPQDLISMKLE---------IFRMFIGNVVDWY 723
G LVE KG + + +++ + +P SMKLE +FR I N+ Y
Sbjct: 111 GIAGVLVEGKGDKIVLGIGLNVNNK--VPNGATSMKLELGSEVPLLSVFRSLITNLDRLY 168
Query: 724 HKFERSRLVKLDKLEKNILLGQGMKMFLKRTEDLYLHDLKGFQNVVHELDDGEV 777
F ++ + L+ + N++LG +K+ + + D+ F ++ LD GEV
Sbjct: 169 LNFLKNPMDILNLVRDNMILGVRVKILGDGSFEGIAEDIDDFGRLIIRLDSGEV 222
>pdb|3NXS|A Chain A, Crystal Structure Of LaoAO TRANSPORT SYSTEM FROM
MYCOBACTERIUM Smegmatis Bound To Gdp
Length = 329
Score = 33.1 bits (74), Expect = 0.98, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 159 DSRMKIFQNIMEVLKDTNVGM-IGVYGVNGVGKTTLVKQIAMQVIE 203
D R + Q +++++ + M +G+ GV GVGK+T ++ + M +IE
Sbjct: 38 DHREQAQQLLLDLMPEAGSAMHVGITGVPGVGKSTTIEALGMHLIE 83
>pdb|3QYH|B Chain B, Crystal Structure Of Co-Type Nitrile Hydratase Beta-H71l
From Pseudomonas Putida.
pdb|3QYH|D Chain D, Crystal Structure Of Co-Type Nitrile Hydratase Beta-H71l
From Pseudomonas Putida.
pdb|3QYH|F Chain F, Crystal Structure Of Co-Type Nitrile Hydratase Beta-H71l
From Pseudomonas Putida.
pdb|3QYH|H Chain H, Crystal Structure Of Co-Type Nitrile Hydratase Beta-H71l
From Pseudomonas Putida
Length = 219
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 129 LLGTGNFGTVSFRPTVERTTPVSYTAYEQFDSRMKIFQNIM 169
LL GNF FR ++ER P Y ++ + +F+N++
Sbjct: 40 LLANGNFNLDEFRHSIERMGPAHYLEGTYYELWLHVFENLL 80
>pdb|2E41|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With The Reaction Product Analog
Biotinol-5'-Amp, Mutations R48a And K111a
pdb|2E41|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With The Reaction Product Analog
Biotinol-5'-Amp, Mutations R48a And K111a
pdb|2E64|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii, Mutations R48a And K111a
pdb|2E64|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii, Mutations R48a And K111a
pdb|2ZGW|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Adenosine And Biotin,
Mutations R48a And K111a
pdb|2ZGW|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Adenosine And Biotin,
Mutations R48a And K111a
pdb|2EJF|A Chain A, Crystal Structure Of The Biotin Protein Ligase (Mutations
R48a And K111a) And Biotin Carboxyl Carrier Protein
Complex From Pyrococcus Horikoshii Ot3
pdb|2EJF|B Chain B, Crystal Structure Of The Biotin Protein Ligase (Mutations
R48a And K111a) And Biotin Carboxyl Carrier Protein
Complex From Pyrococcus Horikoshii Ot3
Length = 235
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 678 LVELKGLSKLTTLEIHIRDARIMPQDLISMKLE---------IFRMFIGNVVDWYHKFER 728
LVE KG + + +++ + +P SMKLE +FR I N+ Y F +
Sbjct: 116 LVEGKGDKIVLGIGLNVNNK--VPNGATSMKLELGSEVPLLSVFRSLITNLDRLYLNFLK 173
Query: 729 SRLVKLDKLEKNILLGQGMKMFLKRTEDLYLHDLKGFQNVVHELDDGEV 777
+ + L+ + N++LG +K+ + + D+ F ++ LD GEV
Sbjct: 174 NPMDILNLVRDNMILGVRVKILGDGSFEGIAEDIDDFGRLIIRLDSGEV 222
>pdb|2DXT|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Atp And Biotin, Mutation D104a
pdb|2DXT|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Atp And Biotin, Mutation D104a
pdb|2DZ9|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Biotinyl-5'-Amp, Mutation
D104a
pdb|2DZ9|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Biotinyl-5'-Amp, Mutation
D104a
pdb|2E65|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3, Mutation D104a
pdb|2E65|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3, Mutation D104a
Length = 235
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 678 LVELKGLSKLTTLEIHIRDARIMPQDLISMKLE---------IFRMFIGNVVDWYHKFER 728
LVE KG + + +++ + +P SMKLE +FR I N+ Y F +
Sbjct: 116 LVEGKGDKIVLGIGLNVNNK--VPNGATSMKLELGSEVPLLSVFRSLITNLDRLYLNFLK 173
Query: 729 SRLVKLDKLEKNILLGQGMKMFLKRTEDLYLHDLKGFQNVVHELDDGEV 777
+ + L+ + N++LG +K+ + + D+ F ++ LD GEV
Sbjct: 174 NPMDILNLVRDNMILGVRVKILGDGSFEGIAEDIDDFGRLIIRLDSGEV 222
>pdb|2DJZ|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-amp, K111a
Mutation
pdb|2DJZ|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-amp, K111a
Mutation
pdb|2HNI|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3, K111a Mutation
pdb|2HNI|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3, K111a Mutation
Length = 235
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 678 LVELKGLSKLTTLEIHIRDARIMPQDLISMKLE---------IFRMFIGNVVDWYHKFER 728
LVE KG + + +++ + +P SMKLE +FR I N+ Y F +
Sbjct: 116 LVEGKGDKIVLGIGLNVNNK--VPNGATSMKLELGSEVPLLSVFRSLITNLDRLYLNFLK 173
Query: 729 SRLVKLDKLEKNILLGQGMKMFLKRTEDLYLHDLKGFQNVVHELDDGEV 777
+ + L+ + N++LG +K+ + + D+ F ++ LD GEV
Sbjct: 174 NPMDILNLVRDNMILGVRVKILGDGSFEGIAEDIDDFGRLIIRLDSGEV 222
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 25/150 (16%)
Query: 836 SNLRIIKVGECDKLRHLFSFSMAKNLLRLQKISVFDCKSLEIIVGLDMEKQRTTL----G 891
+++++I+ LRHL ++KNL+R ++ F+ L + L++ R T
Sbjct: 45 NSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFN--GLPSLNTLELFDNRLTTVPTQA 102
Query: 892 FNGITT------KDDPDEKVI------FPSLEELDLYSLITIEKLWPKQFQGMSSCQNLT 939
F ++ +++P E + PSL LDL L +E + F+G+ NL
Sbjct: 103 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV---NLR 159
Query: 940 KVTVAFCDRLKYLFSYSMVNSLVQLQHLEI 969
+ + C+ L + +LV+L+ LE+
Sbjct: 160 YLNLGMCN----LKDIPNLTALVRLEELEL 185
>pdb|3QYG|B Chain B, Crystal Structure Of Co-Type Nitrile Hydratase Beta-E56q
From Pseudomonas Putida.
pdb|3QYG|D Chain D, Crystal Structure Of Co-Type Nitrile Hydratase Beta-E56q
From Pseudomonas Putida.
pdb|3QYG|F Chain F, Crystal Structure Of Co-Type Nitrile Hydratase Beta-E56q
From Pseudomonas Putida.
pdb|3QYG|H Chain H, Crystal Structure Of Co-Type Nitrile Hydratase Beta-E56q
From Pseudomonas Putida
Length = 219
Score = 32.3 bits (72), Expect = 2.0, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 129 LLGTGNFGTVSFRPTVERTTPVSYTAYEQFDSRMKIFQNIM 169
LL GNF FR +++R P Y ++ + +F+N++
Sbjct: 40 LLANGNFNLDEFRHSIQRMGPAHYLEGTYYEHWLHVFENLL 80
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 25/150 (16%)
Query: 836 SNLRIIKVGECDKLRHLFSFSMAKNLLRLQKISVFDCKSLEIIVGLDMEKQRTTL----G 891
+++++I+ LRHL ++KNL+R ++ F+ L + L++ R T
Sbjct: 45 NSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFN--GLPSLNTLELFDNRLTTVPTQA 102
Query: 892 FNGITT------KDDPDEKVI------FPSLEELDLYSLITIEKLWPKQFQGMSSCQNLT 939
F ++ +++P E + PSL LDL L +E + F+G+ NL
Sbjct: 103 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV---NLR 159
Query: 940 KVTVAFCDRLKYLFSYSMVNSLVQLQHLEI 969
+ + C+ L + +LV+L+ LE+
Sbjct: 160 YLNLGMCN----LKDIPNLTALVRLEELEL 185
>pdb|3CWB|E Chain E, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|R Chain R, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|E Chain E, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|R Chain R, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|E Chain E, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|R Chain R, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|E Chain E, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|R Chain R, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|E Chain E, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|R Chain R, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|E Chain E, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|R Chain R, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|E Chain E, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|R Chain R, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|E Chain E, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|R Chain R, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|E Chain E, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|R Chain R, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|E Chain E, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|R Chain R, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|E Chain E, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|R Chain R, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|E Chain E, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|R Chain R, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|E Chain E, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|R Chain R, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 196
Score = 32.0 bits (71), Expect = 2.6, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 447 VRTSEAARNRVYTLVDNLKASSLLLDGDKDEVKLHDIIYAVAVSIA-RDEFMF-NIQSKD 504
V T+ AA+N V + +L AS+ +L K E+KL DI V+ R + +F +++
Sbjct: 45 VATAYAAKNVVTQFISSLSASADVLALSKIEIKLSDIPEGKNVAFKWRGKPLFVRHRTQA 104
Query: 505 ELKDKTQKDSIAISLPNRDIDEL--PE 529
E+ + + D + P D+D + PE
Sbjct: 105 EINQEAEVDVSKLRDPQHDLDRVKKPE 131
>pdb|2GAS|A Chain A, Crystal Structure Of Isoflavone Reductase
pdb|2GAS|B Chain B, Crystal Structure Of Isoflavone Reductase
Length = 307
Score = 31.6 bits (70), Expect = 2.9, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 1169 WEGNLNSTIQKLFVVGFHDIKDLKLSQFPH--LKEIWHGQAL 1208
WE + T++K +V +KD++ S FPH L ++H Q +
Sbjct: 230 WEKKIGKTLEKTYVSEEQVLKDIQESSFPHNYLLALYHSQQI 271
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 135 FGTVSFRPTVERTTPVSYTAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLV 194
F R +ER T V+Y + ++ E+ K +IG+ G NG+GKTT V
Sbjct: 273 FTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGE---VIGIVGPNGIGKTTFV 329
Query: 195 KQIA 198
K +A
Sbjct: 330 KXLA 333
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 176 NVGMIGVYGVNGVGKTTLVKQIAMQVI 202
N ++GV G NGVGKTT++K +A ++I
Sbjct: 24 NNTILGVLGKNGVGKTTVLKILAGEII 50
>pdb|3MD0|A Chain A, Crystal Structure Of ArginineORNITHINE TRANSPORT SYSTEM
ATPASE FROM Mycobacterium Tuberculosis Bound To Gdp (A
Ras-Like Gtpase Superfamily Protein)
pdb|3P32|A Chain A, Hydrolysis Of Gtp To Gdp By An Mcm-Associated And Meab-
And Mmaa-Like G-Protein From Mycobacterium Tuberculosis
pdb|4GT1|A Chain A, Crystal Structure Of A Meab- And Mmaa-Like Gtpase From
Mycobacterium Tuberculosis Bound To 2'-Deoxyguanosine
Diphosphate
Length = 355
Score = 30.8 bits (68), Expect = 5.8, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIE 203
N +G+ GV GVGK+T ++ + M +IE
Sbjct: 78 NAHRVGITGVPGVGKSTAIEALGMHLIE 105
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 30.8 bits (68), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 16/101 (15%)
Query: 129 LLGTGNFGTVSFRPTVERTTPV------SYTAYEQFDS------RMKIFQNIMEVLKDTN 176
LLG+ G+ + TP TA + DS R K Q ++EVL
Sbjct: 141 LLGSNETGSSAAGTNSNANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRT 200
Query: 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDK----LFDKVVFV 213
+ G GVGKT + + +A Q+I ++ L DK V
Sbjct: 201 KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.4 bits (67), Expect = 6.8, Method: Composition-based stats.
Identities = 42/192 (21%), Positives = 74/192 (38%), Gaps = 22/192 (11%)
Query: 544 KYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLP-SSLVCLISLRTLSLEGCQVGDVAIVG 602
K D + PDL + ++H + + ++L+ L L+L+ C++ + + G
Sbjct: 19 KRDLTALPPDL----PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG 74
Query: 603 QLKKLEILSFRNSDIQQLPREIGQLVQXXXXXXXXXXXXQAIAPNVISKLSRLEELYMGD 662
L L L ++ +Q LP +GQ + ++ + L L+ELY+
Sbjct: 75 TLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 663 S---------FSQWEKVEGGS--NASLVE-----LKGLSKLTTLEIHIRDARIMPQDLIS 706
+ + K+E S N +L E L GL L TL + +P+
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Query: 707 MKLEIFRMFIGN 718
L F GN
Sbjct: 194 SHLLPFAFLHGN 205
>pdb|3LW2|A Chain A, Mouse Plasminogen Activator Inhibitor-1 (Pai-1)
Length = 379
Score = 30.4 bits (67), Expect = 6.8, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 151 SYTAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGV 188
S+TA++ D +K+FQ +++ KD NV + YGV+ V
Sbjct: 6 SHTAHQATDFGVKVFQQVVQASKDRNV-VFSPYGVSSV 42
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 30.4 bits (67), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
Query: 129 LLGTGNFGTVSFRPTVERTTPV------SYTAYEQFDS------RMKIFQNIMEVLKDTN 176
LLG+ G+ + TP TA + DS R K Q ++EVL
Sbjct: 141 LLGSNETGSSAAGTNSNANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRT 200
Query: 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKL 206
+ G GVGKT + + +A Q+I +++
Sbjct: 201 KNNPVLIGEPGVGKTAIAEGLAQQIINNEV 230
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.4 bits (67), Expect = 7.5, Method: Composition-based stats.
Identities = 37/172 (21%), Positives = 67/172 (38%), Gaps = 18/172 (10%)
Query: 564 VVHFTRTCFLSLP-SSLVCLISLRTLSLEGCQVGDVAIVGQLKKLEILSFRNSDIQQLPR 622
++H + + ++L+ L L+L+ C++ + + G L L L ++ +Q LP
Sbjct: 36 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPL 95
Query: 623 EIGQLVQXXXXXXXXXXXXQAIAPNVISKLSRLEELYMGDS---------FSQWEKVEGG 673
+GQ + ++ + L L+ELY+ + + K+E
Sbjct: 96 -LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 154
Query: 674 S--NASLVE-----LKGLSKLTTLEIHIRDARIMPQDLISMKLEIFRMFIGN 718
S N +L E L GL L TL + +P+ L F GN
Sbjct: 155 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 206
>pdb|4DY0|A Chain A, Crystal Structure Of Native Protease Nexin-1 With Heparin
pdb|4DY0|B Chain B, Crystal Structure Of Native Protease Nexin-1 With Heparin
pdb|4DY7|C Chain C, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
pdb|4DY7|F Chain F, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
Length = 379
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 19/73 (26%)
Query: 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQN----KLSSDL 232
+ M+ YGVNGVGK ++K+I ++ K D+ T+ N K +S++
Sbjct: 58 LAMVMRYGVNGVGK--ILKKINKAIVSKK------------NKDIVTVANAVFVKNASEI 103
Query: 233 ELEF-KQNENVFQ 244
E+ F +N++VFQ
Sbjct: 104 EVPFVTRNKDVFQ 116
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.0 bits (66), Expect = 8.5, Method: Composition-based stats.
Identities = 42/192 (21%), Positives = 73/192 (38%), Gaps = 22/192 (11%)
Query: 544 KYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLP-SSLVCLISLRTLSLEGCQVGDVAIVG 602
K D + PDL + ++H + + ++L+ L L+L+ C++ + + G
Sbjct: 19 KRDLTALPPDL----PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG 74
Query: 603 QLKKLEILSFRNSDIQQLPREIGQLVQXXXXXXXXXXXXQAIAPNVISKLSRLEELYMGD 662
L L L ++ +Q LP +GQ + ++ + L L+ELY+
Sbjct: 75 TLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 663 S---------FSQWEKVEGGS--NASLVE-----LKGLSKLTTLEIHIRDARIMPQDLIS 706
+ + K+E S N L E L GL L TL + +P+
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Query: 707 MKLEIFRMFIGN 718
L F GN
Sbjct: 194 SHLLPFAFLHGN 205
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.0 bits (66), Expect = 8.9, Method: Composition-based stats.
Identities = 37/172 (21%), Positives = 66/172 (38%), Gaps = 18/172 (10%)
Query: 564 VVHFTRTCFLSLP-SSLVCLISLRTLSLEGCQVGDVAIVGQLKKLEILSFRNSDIQQLPR 622
++H + + ++L+ L L+L+ C++ + + G L L L ++ +Q LP
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPL 94
Query: 623 EIGQLVQXXXXXXXXXXXXQAIAPNVISKLSRLEELYMGDS---------FSQWEKVEGG 673
+GQ + ++ + L L+ELY+ + + K+E
Sbjct: 95 -LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 674 S--NASLVE-----LKGLSKLTTLEIHIRDARIMPQDLISMKLEIFRMFIGN 718
S N L E L GL L TL + +P+ L F GN
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.0 bits (66), Expect = 8.9, Method: Composition-based stats.
Identities = 37/172 (21%), Positives = 66/172 (38%), Gaps = 18/172 (10%)
Query: 564 VVHFTRTCFLSLP-SSLVCLISLRTLSLEGCQVGDVAIVGQLKKLEILSFRNSDIQQLPR 622
++H + + ++L+ L L+L+ C++ + + G L L L ++ +Q LP
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPL 94
Query: 623 EIGQLVQXXXXXXXXXXXXQAIAPNVISKLSRLEELYMGDS---------FSQWEKVEGG 673
+GQ + ++ + L L+ELY+ + + K+E
Sbjct: 95 -LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 674 S--NASLVE-----LKGLSKLTTLEIHIRDARIMPQDLISMKLEIFRMFIGN 718
S N L E L GL L TL + +P+ L F GN
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.0 bits (66), Expect = 9.0, Method: Composition-based stats.
Identities = 37/172 (21%), Positives = 66/172 (38%), Gaps = 18/172 (10%)
Query: 564 VVHFTRTCFLSLP-SSLVCLISLRTLSLEGCQVGDVAIVGQLKKLEILSFRNSDIQQLPR 622
++H + + ++L+ L L+L+ C++ + + G L L L ++ +Q LP
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPL 94
Query: 623 EIGQLVQXXXXXXXXXXXXQAIAPNVISKLSRLEELYMGDS---------FSQWEKVEGG 673
+GQ + ++ + L L+ELY+ + + K+E
Sbjct: 95 -LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 674 S--NASLVE-----LKGLSKLTTLEIHIRDARIMPQDLISMKLEIFRMFIGN 718
S N L E L GL L TL + +P+ L F GN
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.0 bits (66), Expect = 9.0, Method: Composition-based stats.
Identities = 37/172 (21%), Positives = 66/172 (38%), Gaps = 18/172 (10%)
Query: 564 VVHFTRTCFLSLP-SSLVCLISLRTLSLEGCQVGDVAIVGQLKKLEILSFRNSDIQQLPR 622
++H + + ++L+ L L+L+ C++ + + G L L L ++ +Q LP
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPL 94
Query: 623 EIGQLVQXXXXXXXXXXXXQAIAPNVISKLSRLEELYMGDS---------FSQWEKVEGG 673
+GQ + ++ + L L+ELY+ + + K+E
Sbjct: 95 -LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 674 S--NASLVE-----LKGLSKLTTLEIHIRDARIMPQDLISMKLEIFRMFIGN 718
S N L E L GL L TL + +P+ L F GN
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
>pdb|2EBD|A Chain A, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
pdb|2EBD|B Chain B, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
Length = 309
Score = 30.0 bits (66), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 492 ARDEFMFNIQSKDEL------KDKTQKDSIAISLPN----RDIDELPERLECPKLSLFLL 541
R+ F ++S +E+ K + + +++ +P+ R I+ L E+L PK +F+
Sbjct: 201 GRELFKVAVRSMEEVCREVLEKAGVKPEEVSLVIPHQANVRIINALAEKLNIPKEKVFVN 260
Query: 542 FAKYD--SSLKIPDLFFEGMNELRV 564
KY S+ IP E + E +V
Sbjct: 261 IQKYGNTSAASIPIALHEAIKEGKV 285
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,385,151
Number of Sequences: 62578
Number of extensions: 1465580
Number of successful extensions: 3856
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 3810
Number of HSP's gapped (non-prelim): 61
length of query: 1355
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1244
effective length of database: 8,027,179
effective search space: 9985810676
effective search space used: 9985810676
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)