Query 000679
Match_columns 1355
No_of_seqs 655 out of 5626
Neff 10.1
Searched_HMMs 46136
Date Mon Apr 1 21:45:26 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000679.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000679hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2E-84 4.3E-89 798.5 46.3 795 37-979 23-864 (889)
2 PLN03210 Resistant to P. syrin 100.0 1E-60 2.2E-65 627.6 54.7 686 154-978 182-909 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.7E-41 6E-46 381.6 19.5 277 161-447 1-285 (287)
4 PLN00113 leucine-rich repeat r 100.0 4.6E-32 1E-36 359.8 27.4 113 1124-1256 475-587 (968)
5 PLN00113 leucine-rich repeat r 100.0 1.6E-31 3.4E-36 354.8 27.0 512 514-1233 71-589 (968)
6 PLN03210 Resistant to P. syrin 99.9 1.1E-20 2.3E-25 249.8 21.8 370 533-1082 531-909 (1153)
7 KOG0618 Serine/threonine phosp 99.8 5.9E-22 1.3E-26 229.8 -0.0 124 536-663 23-147 (1081)
8 KOG0472 Leucine-rich repeat pr 99.8 2.5E-23 5.5E-28 218.1 -10.7 107 1122-1251 433-539 (565)
9 KOG0472 Leucine-rich repeat pr 99.8 6.3E-23 1.4E-27 215.2 -11.0 179 509-701 42-222 (565)
10 KOG0444 Cytoskeletal regulator 99.8 1.4E-20 3E-25 207.4 -3.6 337 516-979 36-379 (1255)
11 KOG4194 Membrane glycoprotein 99.8 4.3E-19 9.3E-24 195.0 7.3 348 534-974 78-428 (873)
12 KOG0444 Cytoskeletal regulator 99.8 3.4E-20 7.3E-25 204.3 -3.2 181 514-703 57-240 (1255)
13 KOG4194 Membrane glycoprotein 99.7 1.2E-18 2.7E-23 191.5 5.8 131 562-701 80-213 (873)
14 KOG0618 Serine/threonine phosp 99.7 1.2E-19 2.5E-24 211.0 -2.7 132 1122-1286 357-489 (1081)
15 KOG4658 Apoptotic ATPase [Sign 99.5 2.1E-14 4.5E-19 179.2 9.9 114 527-644 516-634 (889)
16 KOG0617 Ras suppressor protein 99.5 4.9E-16 1.1E-20 144.3 -4.5 165 526-704 25-192 (264)
17 KOG0617 Ras suppressor protein 99.4 4.3E-14 9.4E-19 131.5 -0.6 148 514-666 35-186 (264)
18 PRK04841 transcriptional regul 99.3 1.6E-10 3.5E-15 153.5 23.0 292 154-492 12-332 (903)
19 KOG4237 Extracellular matrix p 99.3 5E-13 1.1E-17 141.6 -1.7 130 532-665 42-176 (498)
20 PRK15387 E3 ubiquitin-protein 99.2 8.8E-11 1.9E-15 143.5 13.0 92 561-665 202-294 (788)
21 PRK00411 cdc6 cell division co 99.2 5.5E-09 1.2E-13 123.8 27.2 293 156-472 30-357 (394)
22 PRK15370 E3 ubiquitin-protein 99.1 8.6E-11 1.9E-15 144.8 10.2 92 562-663 180-272 (754)
23 PRK15387 E3 ubiquitin-protein 99.1 3.5E-10 7.6E-15 138.4 14.7 250 516-873 205-456 (788)
24 TIGR03015 pepcterm_ATPase puta 99.1 1.1E-08 2.4E-13 114.2 23.6 186 174-367 40-242 (269)
25 TIGR02928 orc1/cdc6 family rep 99.1 3.2E-08 7E-13 115.9 28.4 297 157-472 16-349 (365)
26 KOG4341 F-box protein containi 99.1 1.8E-12 3.9E-17 138.8 -6.7 300 909-1255 139-441 (483)
27 PRK15370 E3 ubiquitin-protein 99.1 3E-10 6.4E-15 140.2 11.3 135 515-665 181-316 (754)
28 PF01637 Arch_ATPase: Archaeal 99.1 2.4E-10 5.2E-15 125.2 8.7 202 158-362 1-233 (234)
29 COG2909 MalT ATP-dependent tra 99.0 1.1E-08 2.4E-13 120.8 20.4 294 155-495 18-341 (894)
30 KOG4341 F-box protein containi 99.0 6E-12 1.3E-16 134.9 -6.5 138 1098-1247 320-459 (483)
31 PF05729 NACHT: NACHT domain 99.0 2.1E-09 4.5E-14 110.4 11.5 150 178-333 1-163 (166)
32 KOG4237 Extracellular matrix p 99.0 9.3E-11 2E-15 124.7 -0.1 126 535-663 68-198 (498)
33 PRK00080 ruvB Holliday junctio 98.9 2.2E-08 4.8E-13 114.3 16.9 279 152-475 21-312 (328)
34 TIGR00635 ruvB Holliday juncti 98.9 2.1E-08 4.5E-13 114.1 16.7 275 156-475 4-291 (305)
35 PF14580 LRR_9: Leucine-rich r 98.7 1E-08 2.3E-13 102.3 5.4 79 558-637 17-97 (175)
36 PTZ00112 origin recognition co 98.7 2E-06 4.4E-11 102.7 23.7 205 156-367 755-986 (1164)
37 KOG1259 Nischarin, modulator o 98.7 2.7E-09 5.9E-14 109.1 0.1 136 558-703 282-417 (490)
38 KOG0532 Leucine-rich repeat (L 98.7 1.6E-09 3.5E-14 120.8 -2.1 144 547-704 86-230 (722)
39 cd00116 LRR_RI Leucine-rich re 98.7 4.8E-09 1E-13 121.0 1.0 137 555-696 18-176 (319)
40 PF14580 LRR_9: Leucine-rich r 98.7 1.8E-08 3.9E-13 100.6 4.6 132 524-660 9-147 (175)
41 KOG0532 Leucine-rich repeat (L 98.6 3.7E-09 8E-14 118.0 -2.0 172 519-706 82-255 (722)
42 cd00116 LRR_RI Leucine-rich re 98.6 8.2E-09 1.8E-13 119.1 0.5 128 565-697 3-149 (319)
43 COG3903 Predicted ATPase [Gene 98.6 2E-07 4.3E-12 102.2 9.6 290 176-494 13-316 (414)
44 PRK13342 recombination factor 98.6 4.7E-07 1E-11 106.6 13.4 178 153-364 9-197 (413)
45 PRK06893 DNA replication initi 98.5 1.2E-06 2.6E-11 94.0 13.5 154 175-364 37-204 (229)
46 COG2256 MGS1 ATPase related to 98.4 1.6E-06 3.4E-11 94.4 12.4 233 152-423 20-276 (436)
47 PRK04195 replication factor C 98.4 1.2E-05 2.5E-10 96.9 20.9 185 152-367 10-206 (482)
48 PRK15386 type III secretion pr 98.4 8.5E-07 1.8E-11 99.4 8.4 62 1064-1141 50-111 (426)
49 PRK07003 DNA polymerase III su 98.4 1.1E-05 2.4E-10 96.5 18.0 188 152-365 12-223 (830)
50 PF13173 AAA_14: AAA domain 98.4 7.2E-07 1.6E-11 86.1 6.5 121 177-325 2-127 (128)
51 COG3899 Predicted ATPase [Gene 98.3 1.7E-05 3.6E-10 100.8 19.6 269 158-438 2-333 (849)
52 PF13401 AAA_22: AAA domain; P 98.3 1.8E-06 3.9E-11 84.3 8.5 117 176-301 3-125 (131)
53 COG1474 CDC6 Cdc6-related prot 98.3 6.4E-05 1.4E-09 85.5 22.0 199 158-363 19-238 (366)
54 TIGR02903 spore_lon_C ATP-depe 98.3 0.00011 2.4E-09 90.2 25.7 203 154-365 152-397 (615)
55 PRK12402 replication factor C 98.3 8.5E-06 1.8E-10 94.5 14.9 201 153-362 12-225 (337)
56 PRK14961 DNA polymerase III su 98.3 1.7E-05 3.7E-10 91.6 17.1 193 153-360 13-217 (363)
57 PTZ00202 tuzin; Provisional 98.3 3.1E-05 6.7E-10 86.0 17.7 165 150-333 256-434 (550)
58 KOG3207 Beta-tubulin folding c 98.3 2.6E-07 5.5E-12 100.6 1.7 81 559-639 120-208 (505)
59 PRK14949 DNA polymerase III su 98.3 1E-05 2.2E-10 98.9 15.0 186 152-363 12-221 (944)
60 cd01128 rho_factor Transcripti 98.3 1.8E-06 3.9E-11 92.3 7.8 93 176-269 15-115 (249)
61 PRK05564 DNA polymerase III su 98.2 1.6E-05 3.4E-10 90.3 15.4 177 156-362 4-189 (313)
62 PLN03025 replication factor C 98.2 8.1E-06 1.8E-10 92.8 13.1 184 152-359 9-196 (319)
63 TIGR03420 DnaA_homol_Hda DnaA 98.2 9.5E-06 2.1E-10 87.9 12.9 170 160-364 21-202 (226)
64 PRK12323 DNA polymerase III su 98.2 1E-05 2.2E-10 95.5 13.8 180 152-361 12-223 (700)
65 PRK09376 rho transcription ter 98.2 3.5E-06 7.5E-11 93.4 9.3 101 167-269 158-268 (416)
66 PRK06645 DNA polymerase III su 98.2 2.8E-05 6.1E-10 91.9 16.8 179 152-360 17-226 (507)
67 PRK14960 DNA polymerase III su 98.2 1.9E-05 4.1E-10 93.6 15.2 179 152-360 11-216 (702)
68 PRK14963 DNA polymerase III su 98.2 2.5E-05 5.4E-10 93.0 16.5 197 152-360 10-214 (504)
69 PRK14956 DNA polymerase III su 98.2 8E-06 1.7E-10 94.2 11.7 192 152-358 14-217 (484)
70 COG4886 Leucine-rich repeat (L 98.2 1.2E-06 2.7E-11 103.9 5.2 155 534-702 116-272 (394)
71 PRK14957 DNA polymerase III su 98.2 2.2E-05 4.7E-10 93.4 15.4 189 152-366 12-224 (546)
72 cd00009 AAA The AAA+ (ATPases 98.2 9.1E-06 2E-10 81.5 10.7 126 159-303 1-131 (151)
73 PRK14962 DNA polymerase III su 98.2 3.6E-05 7.7E-10 90.8 16.5 190 152-367 10-223 (472)
74 COG4886 Leucine-rich repeat (L 98.2 1.8E-06 3.9E-11 102.5 5.6 146 514-664 118-266 (394)
75 PLN03150 hypothetical protein; 98.1 2.9E-06 6.3E-11 105.2 7.3 103 561-664 419-526 (623)
76 PRK08727 hypothetical protein; 98.1 2.5E-05 5.4E-10 84.0 13.3 163 164-360 28-201 (233)
77 PF13855 LRR_8: Leucine rich r 98.1 2.5E-06 5.5E-11 69.7 4.3 56 561-616 2-60 (61)
78 PRK00440 rfc replication facto 98.1 4.6E-05 1E-09 87.6 16.1 182 153-360 14-200 (319)
79 PRK15386 type III secretion pr 98.1 9.4E-06 2E-10 91.2 9.7 108 1185-1327 93-209 (426)
80 PF13191 AAA_16: AAA ATPase do 98.1 1E-05 2.2E-10 84.6 9.7 73 158-232 2-82 (185)
81 PRK05896 DNA polymerase III su 98.1 3E-05 6.5E-10 92.1 14.4 199 152-365 12-223 (605)
82 PF05496 RuvB_N: Holliday junc 98.1 5.6E-05 1.2E-09 77.2 14.1 182 152-363 20-221 (233)
83 KOG1259 Nischarin, modulator o 98.1 7.1E-07 1.5E-11 91.8 -0.1 128 533-666 283-412 (490)
84 PRK07940 DNA polymerase III su 98.1 7.6E-05 1.6E-09 85.9 16.3 172 156-363 5-213 (394)
85 KOG2028 ATPase related to the 98.1 7.3E-05 1.6E-09 79.6 14.1 173 156-358 138-331 (554)
86 PRK13341 recombination factor 98.1 2.4E-05 5.3E-10 96.7 12.5 171 152-357 24-211 (725)
87 PRK08084 DNA replication initi 98.0 4.5E-05 9.7E-10 82.2 13.1 168 162-363 30-209 (235)
88 PRK14951 DNA polymerase III su 98.0 6.2E-05 1.3E-09 90.9 15.5 197 152-360 12-222 (618)
89 PRK09112 DNA polymerase III su 98.0 0.00013 2.9E-09 82.8 17.3 200 151-363 18-240 (351)
90 PRK07471 DNA polymerase III su 98.0 8.1E-05 1.8E-09 85.0 15.6 200 152-363 15-238 (365)
91 PRK14964 DNA polymerase III su 98.0 8.4E-05 1.8E-09 87.1 15.7 182 152-359 9-213 (491)
92 TIGR02397 dnaX_nterm DNA polym 98.0 0.00012 2.7E-09 85.5 17.2 184 153-363 11-218 (355)
93 TIGR00678 holB DNA polymerase 98.0 9.8E-05 2.1E-09 77.0 14.5 160 167-359 3-187 (188)
94 TIGR00767 rho transcription te 98.0 1.5E-05 3.2E-10 89.1 8.5 93 176-269 167-267 (415)
95 PLN03150 hypothetical protein; 98.0 1.1E-05 2.3E-10 100.2 8.3 109 535-645 419-532 (623)
96 PRK07994 DNA polymerase III su 98.0 5.9E-05 1.3E-09 91.2 13.9 197 152-363 12-221 (647)
97 PF00308 Bac_DnaA: Bacterial d 98.0 4.1E-05 8.8E-10 81.2 11.2 164 177-363 34-208 (219)
98 PRK14955 DNA polymerase III su 98.0 6.6E-05 1.4E-09 87.8 14.0 201 152-360 12-225 (397)
99 PRK08691 DNA polymerase III su 98.0 5.6E-05 1.2E-09 90.7 13.3 179 152-360 12-217 (709)
100 KOG3207 Beta-tubulin folding c 98.0 2.2E-06 4.8E-11 93.5 1.2 183 514-699 123-315 (505)
101 PRK14958 DNA polymerase III su 98.0 7.9E-05 1.7E-09 89.0 14.2 183 152-360 12-217 (509)
102 PF13855 LRR_8: Leucine rich r 98.0 7.5E-06 1.6E-10 66.9 3.9 60 534-595 1-61 (61)
103 PRK09087 hypothetical protein; 98.0 0.00012 2.6E-09 77.9 14.2 144 176-363 43-195 (226)
104 TIGR01242 26Sp45 26S proteasom 97.9 0.00018 3.8E-09 83.6 15.7 181 154-357 120-328 (364)
105 PRK14959 DNA polymerase III su 97.9 0.00015 3.2E-09 86.8 14.9 201 152-367 12-225 (624)
106 PRK09111 DNA polymerase III su 97.9 0.00019 4.1E-09 87.0 15.6 199 152-362 20-232 (598)
107 PRK14969 DNA polymerase III su 97.9 0.00019 4.1E-09 86.5 15.5 187 153-365 13-223 (527)
108 PRK14087 dnaA chromosomal repl 97.9 0.00011 2.4E-09 86.7 13.3 166 178-364 142-320 (450)
109 PRK14954 DNA polymerase III su 97.9 0.0002 4.4E-09 86.9 15.3 204 152-363 12-229 (620)
110 PF05621 TniB: Bacterial TniB 97.8 0.00041 9E-09 74.6 15.4 196 162-362 43-260 (302)
111 PRK14970 DNA polymerase III su 97.8 0.00035 7.7E-09 81.6 16.5 182 152-359 13-205 (367)
112 PRK07764 DNA polymerase III su 97.8 0.00024 5.1E-09 89.2 15.6 177 153-359 12-217 (824)
113 PRK14971 DNA polymerase III su 97.8 0.00036 7.7E-09 85.4 16.8 181 153-360 14-219 (614)
114 KOG2120 SCF ubiquitin ligase, 97.8 6.2E-07 1.3E-11 92.4 -6.1 137 1001-1158 236-373 (419)
115 PRK07133 DNA polymerase III su 97.8 0.00033 7.1E-09 85.3 15.6 183 152-364 14-221 (725)
116 PRK14952 DNA polymerase III su 97.8 0.00037 8E-09 84.0 16.0 186 152-367 9-224 (584)
117 PF14516 AAA_35: AAA-like doma 97.8 0.00074 1.6E-08 76.8 17.4 211 152-370 7-246 (331)
118 PRK08451 DNA polymerase III su 97.8 0.00048 1.1E-08 81.6 16.0 186 152-363 10-218 (535)
119 KOG2227 Pre-initiation complex 97.7 0.0027 5.8E-08 71.1 20.2 205 154-364 148-373 (529)
120 KOG0989 Replication factor C, 97.7 0.00013 2.9E-09 76.6 9.5 183 152-357 32-224 (346)
121 PRK06305 DNA polymerase III su 97.7 0.00061 1.3E-08 80.5 16.1 186 152-364 13-224 (451)
122 CHL00181 cbbX CbbX; Provisiona 97.7 0.00058 1.3E-08 75.6 14.8 132 178-333 60-209 (287)
123 PHA02544 44 clamp loader, smal 97.7 0.0003 6.4E-09 80.6 13.1 149 152-331 17-171 (316)
124 PRK14950 DNA polymerase III su 97.7 0.00068 1.5E-08 83.4 16.9 197 152-362 12-220 (585)
125 PRK11331 5-methylcytosine-spec 97.7 0.00018 4E-09 82.1 10.7 109 156-269 175-284 (459)
126 KOG1859 Leucine-rich repeat pr 97.7 1.3E-06 2.9E-11 100.5 -6.3 126 561-697 165-291 (1096)
127 PF12799 LRR_4: Leucine Rich r 97.7 4.9E-05 1.1E-09 56.5 4.0 37 561-597 2-38 (44)
128 PRK14953 DNA polymerase III su 97.7 0.001 2.2E-08 79.2 17.2 181 153-363 13-220 (486)
129 PRK05642 DNA replication initi 97.6 0.00048 1E-08 74.1 12.7 152 178-364 46-209 (234)
130 TIGR02880 cbbX_cfxQ probable R 97.6 0.00078 1.7E-08 74.7 14.7 132 179-334 60-209 (284)
131 TIGR02881 spore_V_K stage V sp 97.6 0.00044 9.5E-09 76.2 12.7 154 157-334 7-192 (261)
132 TIGR02639 ClpA ATP-dependent C 97.6 0.00051 1.1E-08 87.2 14.4 159 154-333 180-358 (731)
133 PRK03992 proteasome-activating 97.6 0.00044 9.4E-09 80.6 12.4 180 155-357 130-337 (389)
134 PRK14948 DNA polymerase III su 97.6 0.0013 2.7E-08 80.7 16.7 197 153-362 13-221 (620)
135 KOG1947 Leucine rich repeat pr 97.6 6.2E-06 1.3E-10 101.5 -3.4 67 998-1079 242-308 (482)
136 PRK08903 DnaA regulatory inact 97.6 0.00037 8E-09 75.3 10.8 166 163-367 27-203 (227)
137 KOG2543 Origin recognition com 97.6 0.00069 1.5E-08 73.6 12.2 168 157-332 7-192 (438)
138 TIGR03345 VI_ClpV1 type VI sec 97.6 0.0007 1.5E-08 86.4 14.5 183 153-357 184-390 (852)
139 PF12799 LRR_4: Leucine Rich r 97.6 8.6E-05 1.9E-09 55.2 3.8 37 584-620 2-39 (44)
140 PRK06647 DNA polymerase III su 97.6 0.0014 3.1E-08 79.2 16.4 194 152-360 12-217 (563)
141 PRK12422 chromosomal replicati 97.5 0.0013 2.8E-08 77.5 15.3 158 178-357 142-307 (445)
142 KOG0531 Protein phosphatase 1, 97.5 3.1E-05 6.6E-10 91.9 1.9 106 557-665 92-198 (414)
143 PRK14965 DNA polymerase III su 97.5 0.0014 3.1E-08 80.1 16.1 199 152-365 12-223 (576)
144 TIGR00362 DnaA chromosomal rep 97.5 0.0006 1.3E-08 80.6 12.6 159 178-360 137-307 (405)
145 PRK14086 dnaA chromosomal repl 97.5 0.00059 1.3E-08 81.4 12.3 160 178-360 315-485 (617)
146 KOG2120 SCF ubiquitin ligase, 97.5 4.3E-06 9.4E-11 86.4 -5.0 63 998-1077 312-374 (419)
147 CHL00095 clpC Clp protease ATP 97.5 0.00075 1.6E-08 86.8 13.4 164 156-333 179-354 (821)
148 PRK14088 dnaA chromosomal repl 97.5 0.00081 1.8E-08 79.5 12.7 182 177-382 130-332 (440)
149 PRK05563 DNA polymerase III su 97.5 0.0021 4.6E-08 78.2 16.5 194 152-360 12-217 (559)
150 KOG1909 Ran GTPase-activating 97.5 1E-05 2.2E-10 86.2 -3.1 37 557-593 27-68 (382)
151 KOG3665 ZYG-1-like serine/thre 97.5 7.7E-05 1.7E-09 91.9 4.0 106 532-639 146-261 (699)
152 PRK00149 dnaA chromosomal repl 97.5 0.0012 2.7E-08 78.9 14.2 182 177-382 148-349 (450)
153 COG0593 DnaA ATPase involved i 97.4 0.0018 3.8E-08 73.5 13.8 138 176-333 112-257 (408)
154 PTZ00361 26 proteosome regulat 97.4 0.002 4.4E-08 75.0 14.4 181 154-357 181-389 (438)
155 TIGR03689 pup_AAA proteasome A 97.4 0.002 4.4E-08 76.1 14.5 163 154-335 180-380 (512)
156 KOG3665 ZYG-1-like serine/thre 97.4 8.4E-05 1.8E-09 91.6 3.0 104 535-638 123-230 (699)
157 PTZ00454 26S protease regulato 97.4 0.0037 7.9E-08 72.4 16.0 182 154-358 143-352 (398)
158 KOG0531 Protein phosphatase 1, 97.4 5.5E-05 1.2E-09 89.8 1.1 102 532-637 93-195 (414)
159 KOG1947 Leucine rich repeat pr 97.4 1.8E-05 3.8E-10 97.5 -3.3 121 835-975 187-308 (482)
160 COG2255 RuvB Holliday junction 97.4 0.023 4.9E-07 59.7 19.6 175 152-362 22-222 (332)
161 COG1222 RPT1 ATP-dependent 26S 97.4 0.0075 1.6E-07 65.4 16.7 206 152-382 147-392 (406)
162 PRK05707 DNA polymerase III su 97.3 0.0031 6.7E-08 71.1 14.5 155 177-363 22-203 (328)
163 PRK07399 DNA polymerase III su 97.3 0.006 1.3E-07 68.4 16.2 196 156-363 4-221 (314)
164 COG1373 Predicted ATPase (AAA+ 97.3 0.0021 4.6E-08 74.8 12.7 138 160-329 21-163 (398)
165 PF00004 AAA: ATPase family as 97.3 0.00035 7.6E-09 68.2 5.3 69 180-269 1-70 (132)
166 TIGR01241 FtsH_fam ATP-depende 97.2 0.0036 7.9E-08 75.9 14.2 181 154-357 53-260 (495)
167 KOG2228 Origin recognition com 97.2 0.017 3.7E-07 62.0 17.0 168 156-333 24-219 (408)
168 KOG1859 Leucine-rich repeat pr 97.2 5.1E-05 1.1E-09 88.0 -2.0 108 556-666 183-292 (1096)
169 TIGR03346 chaperone_ClpB ATP-d 97.2 0.0048 1E-07 79.7 15.5 157 155-333 172-349 (852)
170 COG3267 ExeA Type II secretory 97.1 0.023 4.9E-07 59.1 16.8 183 174-365 48-247 (269)
171 PRK10865 protein disaggregatio 97.1 0.0033 7.2E-08 80.7 13.5 158 154-333 176-354 (857)
172 PRK06620 hypothetical protein; 97.1 0.0013 2.9E-08 69.3 8.0 136 178-360 45-186 (214)
173 PF05673 DUF815: Protein of un 97.1 0.016 3.4E-07 60.6 15.5 52 153-204 24-79 (249)
174 TIGR00602 rad24 checkpoint pro 97.1 0.0016 3.4E-08 79.2 9.2 51 152-202 80-135 (637)
175 PRK11034 clpA ATP-dependent Cl 97.1 0.00054 1.2E-08 85.4 5.5 157 156-333 186-362 (758)
176 PRK08181 transposase; Validate 97.0 0.0096 2.1E-07 64.8 14.0 79 170-269 101-179 (269)
177 PRK10536 hypothetical protein; 97.0 0.008 1.7E-07 63.6 12.8 57 154-212 53-109 (262)
178 PRK12608 transcription termina 97.0 0.0053 1.1E-07 68.8 12.1 104 165-269 120-232 (380)
179 PRK08118 topology modulation p 97.0 0.00035 7.6E-09 70.6 2.6 35 178-212 2-37 (167)
180 CHL00176 ftsH cell division pr 97.0 0.0072 1.6E-07 74.2 14.2 173 156-356 183-387 (638)
181 KOG4579 Leucine-rich repeat (L 97.0 0.00015 3.3E-09 66.5 -0.4 99 562-662 29-132 (177)
182 PRK08769 DNA polymerase III su 97.0 0.017 3.7E-07 64.5 15.5 181 163-363 11-208 (319)
183 PRK14722 flhF flagellar biosyn 96.9 0.051 1.1E-06 61.8 18.9 88 177-267 137-225 (374)
184 KOG0991 Replication factor C, 96.9 0.002 4.3E-08 64.8 6.7 103 152-269 23-125 (333)
185 smart00382 AAA ATPases associa 96.9 0.0023 5.1E-08 63.4 7.5 91 178-272 3-93 (148)
186 TIGR00763 lon ATP-dependent pr 96.9 0.059 1.3E-06 69.1 21.7 46 157-202 321-372 (775)
187 PRK08116 hypothetical protein; 96.9 0.0018 3.9E-08 71.0 6.8 105 178-302 115-221 (268)
188 PF10443 RNA12: RNA12 protein; 96.9 0.019 4.2E-07 64.9 14.6 203 161-380 1-297 (431)
189 PRK08058 DNA polymerase III su 96.8 0.016 3.5E-07 66.0 14.3 146 158-332 7-181 (329)
190 PRK12727 flagellar biosynthesi 96.8 0.034 7.4E-07 65.1 16.9 88 177-267 350-438 (559)
191 COG0466 Lon ATP-dependent Lon 96.8 0.15 3.3E-06 60.9 22.1 161 158-333 325-508 (782)
192 PRK06090 DNA polymerase III su 96.8 0.056 1.2E-06 60.3 18.0 176 164-363 11-201 (319)
193 PHA00729 NTP-binding motif con 96.8 0.0054 1.2E-07 63.8 9.2 35 167-201 7-41 (226)
194 KOG4579 Leucine-rich repeat (L 96.8 0.00032 6.9E-09 64.4 0.1 73 550-622 67-140 (177)
195 KOG2982 Uncharacterized conser 96.8 0.00028 6.1E-09 73.4 -0.6 98 562-663 47-156 (418)
196 PF02562 PhoH: PhoH-like prote 96.7 0.0041 8.9E-08 64.0 7.7 50 163-214 7-56 (205)
197 PRK06871 DNA polymerase III su 96.7 0.04 8.6E-07 61.7 15.9 175 164-360 10-200 (325)
198 CHL00195 ycf46 Ycf46; Provisio 96.7 0.014 3E-07 69.3 12.3 182 156-358 228-430 (489)
199 PF00448 SRP54: SRP54-type pro 96.7 0.013 2.8E-07 60.8 10.7 88 177-266 1-92 (196)
200 KOG1909 Ran GTPase-activating 96.6 0.00055 1.2E-08 73.4 0.4 15 679-693 207-221 (382)
201 PF13177 DNA_pol3_delta2: DNA 96.6 0.0084 1.8E-07 60.3 8.9 136 160-320 1-161 (162)
202 PRK10787 DNA-binding ATP-depen 96.6 0.049 1.1E-06 69.1 17.4 164 157-333 323-506 (784)
203 COG1223 Predicted ATPase (AAA+ 96.6 0.0072 1.6E-07 62.0 8.1 176 156-356 121-318 (368)
204 KOG0741 AAA+-type ATPase [Post 96.6 0.084 1.8E-06 60.2 16.8 152 176-353 537-704 (744)
205 KOG0733 Nuclear AAA ATPase (VC 96.6 0.036 7.9E-07 64.2 14.0 94 155-269 189-294 (802)
206 PF04665 Pox_A32: Poxvirus A32 96.5 0.0056 1.2E-07 64.5 7.2 36 178-215 14-49 (241)
207 PRK06964 DNA polymerase III su 96.5 0.07 1.5E-06 60.2 15.8 104 244-363 115-225 (342)
208 KOG0731 AAA+-type ATPase conta 96.5 0.026 5.6E-07 68.6 12.9 184 155-360 310-521 (774)
209 TIGR02639 ClpA ATP-dependent C 96.4 0.018 3.8E-07 73.4 11.5 101 158-269 456-565 (731)
210 PF01695 IstB_IS21: IstB-like 96.4 0.0054 1.2E-07 62.6 5.6 102 177-302 47-150 (178)
211 PRK07261 topology modulation p 96.3 0.012 2.5E-07 60.0 7.9 34 179-212 2-36 (171)
212 TIGR02237 recomb_radB DNA repa 96.3 0.02 4.4E-07 60.9 10.1 88 177-268 12-108 (209)
213 PRK12377 putative replication 96.3 0.022 4.7E-07 61.3 10.1 75 176-268 100-174 (248)
214 KOG0739 AAA+-type ATPase [Post 96.3 0.035 7.5E-07 58.3 10.9 92 157-269 134-237 (439)
215 PRK07993 DNA polymerase III su 96.3 0.089 1.9E-06 59.7 15.5 177 164-361 10-202 (334)
216 KOG1644 U2-associated snRNP A' 96.3 0.0063 1.4E-07 60.4 5.2 83 556-638 60-150 (233)
217 KOG2123 Uncharacterized conser 96.2 0.00055 1.2E-08 70.6 -2.2 105 582-691 18-123 (388)
218 PRK05703 flhF flagellar biosyn 96.2 0.11 2.5E-06 60.9 16.4 87 177-266 221-308 (424)
219 KOG0734 AAA+-type ATPase conta 96.2 0.011 2.4E-07 66.9 7.6 92 157-269 308-408 (752)
220 KOG2035 Replication factor C, 96.2 0.037 8.1E-07 57.7 10.6 203 157-382 14-258 (351)
221 TIGR01243 CDC48 AAA family ATP 96.2 0.066 1.4E-06 68.6 15.6 179 156-357 453-657 (733)
222 PRK07952 DNA replication prote 96.2 0.037 8E-07 59.3 11.2 91 162-269 82-174 (244)
223 smart00763 AAA_PrkA PrkA AAA d 96.2 0.0073 1.6E-07 67.4 5.9 47 157-203 52-104 (361)
224 KOG1514 Origin recognition com 96.1 0.15 3.3E-06 60.6 16.4 201 157-367 397-625 (767)
225 cd01123 Rad51_DMC1_radA Rad51_ 96.1 0.02 4.3E-07 62.3 9.2 92 176-268 18-126 (235)
226 PRK06835 DNA replication prote 96.1 0.014 3E-07 65.7 7.9 37 177-215 183-219 (329)
227 TIGR02640 gas_vesic_GvpN gas v 96.1 0.07 1.5E-06 58.7 13.3 56 163-225 9-64 (262)
228 COG0542 clpA ATP-binding subun 96.1 0.089 1.9E-06 64.7 14.9 101 157-269 492-605 (786)
229 TIGR02012 tigrfam_recA protein 96.1 0.021 4.5E-07 63.5 8.9 87 176-269 54-145 (321)
230 PF13207 AAA_17: AAA domain; P 96.1 0.0055 1.2E-07 58.6 3.8 23 179-201 1-23 (121)
231 COG1484 DnaC DNA replication p 96.1 0.029 6.4E-07 60.9 9.7 76 176-269 104-179 (254)
232 cd01393 recA_like RecA is a b 96.0 0.046 9.9E-07 59.0 11.3 91 177-268 19-125 (226)
233 KOG2004 Mitochondrial ATP-depe 96.0 0.12 2.6E-06 61.3 14.5 98 157-269 412-517 (906)
234 PRK09354 recA recombinase A; P 96.0 0.028 6E-07 63.0 9.1 87 176-269 59-150 (349)
235 cd00983 recA RecA is a bacter 96.0 0.025 5.4E-07 62.9 8.7 86 176-268 54-144 (325)
236 COG0542 clpA ATP-binding subun 96.0 0.018 3.9E-07 70.5 8.2 164 156-333 170-346 (786)
237 cd01133 F1-ATPase_beta F1 ATP 95.9 0.054 1.2E-06 58.5 10.9 92 177-269 69-175 (274)
238 PRK00771 signal recognition pa 95.9 0.2 4.4E-06 58.6 16.1 88 176-267 94-185 (437)
239 TIGR03345 VI_ClpV1 type VI sec 95.8 0.012 2.7E-07 75.3 6.3 45 157-201 567-620 (852)
240 PRK08939 primosomal protein Dn 95.8 0.053 1.1E-06 60.6 10.5 95 160-273 135-235 (306)
241 COG0470 HolB ATPase involved i 95.8 0.036 7.7E-07 63.9 9.7 139 158-320 3-168 (325)
242 PRK11889 flhF flagellar biosyn 95.8 0.085 1.8E-06 59.5 11.8 89 176-268 240-331 (436)
243 COG2812 DnaX DNA polymerase II 95.8 0.052 1.1E-06 63.9 10.7 191 152-357 12-214 (515)
244 TIGR03499 FlhF flagellar biosy 95.8 0.049 1.1E-06 60.5 10.1 88 176-266 193-281 (282)
245 KOG0735 AAA+-type ATPase [Post 95.7 0.028 6E-07 66.2 8.2 160 177-356 431-608 (952)
246 KOG1644 U2-associated snRNP A' 95.7 0.012 2.5E-07 58.6 4.4 102 560-663 42-150 (233)
247 TIGR02902 spore_lonB ATP-depen 95.7 0.028 6.1E-07 68.3 8.7 48 154-201 63-110 (531)
248 COG2884 FtsE Predicted ATPase 95.7 0.019 4.1E-07 56.6 5.7 120 176-306 27-201 (223)
249 PRK10865 protein disaggregatio 95.7 0.23 5E-06 64.1 17.4 45 157-201 569-622 (857)
250 PRK06696 uridine kinase; Valid 95.7 0.016 3.5E-07 62.1 6.0 43 160-202 2-47 (223)
251 PRK04132 replication factor C 95.7 0.14 3E-06 64.5 14.6 152 185-361 574-729 (846)
252 KOG2982 Uncharacterized conser 95.7 0.0067 1.4E-07 63.6 2.6 82 557-638 68-156 (418)
253 KOG0730 AAA+-type ATPase [Post 95.7 0.16 3.5E-06 60.0 13.9 159 156-335 434-617 (693)
254 COG1875 NYN ribonuclease and A 95.6 0.058 1.3E-06 58.8 9.4 57 155-211 223-280 (436)
255 TIGR01243 CDC48 AAA family ATP 95.6 0.12 2.6E-06 66.2 14.0 180 155-359 177-383 (733)
256 PF08423 Rad51: Rad51; InterP 95.6 0.053 1.1E-06 59.1 9.2 90 177-267 38-143 (256)
257 PRK09361 radB DNA repair and r 95.5 0.058 1.3E-06 58.1 9.5 45 177-224 23-67 (225)
258 PRK05541 adenylylsulfate kinas 95.5 0.033 7.1E-07 57.3 7.2 36 176-213 6-41 (176)
259 TIGR02238 recomb_DMC1 meiotic 95.5 0.049 1.1E-06 61.0 9.0 92 176-268 95-202 (313)
260 KOG0744 AAA+-type ATPase [Post 95.5 0.047 1E-06 58.3 8.1 83 177-269 177-262 (423)
261 PRK08699 DNA polymerase III su 95.5 0.17 3.8E-06 57.1 13.4 165 177-359 21-202 (325)
262 KOG0728 26S proteasome regulat 95.5 0.28 6E-06 50.3 13.1 156 157-333 148-331 (404)
263 cd01120 RecA-like_NTPases RecA 95.5 0.081 1.8E-06 53.6 10.0 40 179-220 1-40 (165)
264 PF07693 KAP_NTPase: KAP famil 95.5 0.58 1.3E-05 53.8 18.2 43 162-204 2-47 (325)
265 PRK09270 nucleoside triphospha 95.5 0.12 2.5E-06 55.8 11.5 29 175-203 31-59 (229)
266 TIGR03346 chaperone_ClpB ATP-d 95.5 0.026 5.7E-07 73.0 7.5 105 157-269 566-679 (852)
267 TIGR01425 SRP54_euk signal rec 95.4 0.82 1.8E-05 53.2 18.6 38 176-215 99-136 (429)
268 KOG1969 DNA replication checkp 95.4 0.029 6.4E-07 66.4 6.8 74 176-269 325-399 (877)
269 PRK06526 transposase; Provisio 95.4 0.035 7.5E-07 60.2 7.0 74 177-269 98-171 (254)
270 PRK06921 hypothetical protein; 95.4 0.12 2.5E-06 56.8 11.1 71 176-266 116-186 (266)
271 COG0194 Gmk Guanylate kinase [ 95.3 0.074 1.6E-06 52.8 8.3 25 177-201 4-28 (191)
272 KOG0743 AAA+-type ATPase [Post 95.3 1.8 3.9E-05 49.4 19.8 160 178-370 236-417 (457)
273 CHL00095 clpC Clp protease ATP 95.2 0.041 8.9E-07 71.0 8.2 105 157-269 510-623 (821)
274 PRK12724 flagellar biosynthesi 95.2 0.078 1.7E-06 60.7 9.3 83 177-265 223-307 (432)
275 PRK04296 thymidine kinase; Pro 95.2 0.021 4.5E-07 59.3 4.4 111 178-303 3-117 (190)
276 PHA02244 ATPase-like protein 95.2 0.06 1.3E-06 60.3 8.1 34 166-201 110-143 (383)
277 PLN03187 meiotic recombination 95.2 0.08 1.7E-06 59.7 9.3 91 176-267 125-231 (344)
278 PRK11034 clpA ATP-dependent Cl 95.2 0.031 6.6E-07 70.2 6.5 101 158-269 460-569 (758)
279 PF00154 RecA: recA bacterial 95.1 0.11 2.3E-06 57.8 9.8 86 177-269 53-143 (322)
280 cd01131 PilT Pilus retraction 95.1 0.02 4.3E-07 59.9 4.0 108 178-305 2-112 (198)
281 PRK12726 flagellar biosynthesi 95.1 0.15 3.2E-06 57.4 10.8 90 176-268 205-296 (407)
282 PRK10867 signal recognition pa 95.0 0.22 4.7E-06 58.2 12.6 28 176-203 99-126 (433)
283 COG1618 Predicted nucleotide k 95.0 0.031 6.8E-07 53.5 4.5 30 178-208 6-35 (179)
284 PRK12723 flagellar biosynthesi 95.0 0.2 4.4E-06 57.6 11.9 89 176-268 173-265 (388)
285 TIGR03877 thermo_KaiC_1 KaiC d 95.0 0.16 3.5E-06 55.0 10.7 49 176-228 20-68 (237)
286 TIGR02239 recomb_RAD51 DNA rep 94.9 0.093 2E-06 59.1 9.0 58 176-234 95-156 (316)
287 PF01583 APS_kinase: Adenylyls 94.9 0.026 5.7E-07 55.3 4.0 36 177-214 2-37 (156)
288 KOG2739 Leucine-rich acidic nu 94.9 0.013 2.8E-07 61.0 2.0 81 557-639 40-127 (260)
289 PLN00020 ribulose bisphosphate 94.9 0.045 9.7E-07 60.7 6.1 29 175-203 146-174 (413)
290 COG0464 SpoVK ATPases of the A 94.9 0.15 3.3E-06 62.2 11.6 139 176-335 275-425 (494)
291 PLN03186 DNA repair protein RA 94.9 0.09 2E-06 59.5 8.6 58 177-235 123-184 (342)
292 PF00560 LRR_1: Leucine Rich R 94.9 0.0095 2.1E-07 36.6 0.5 21 606-626 1-21 (22)
293 PRK10733 hflB ATP-dependent me 94.9 0.35 7.6E-06 60.5 14.6 156 178-356 186-356 (644)
294 PRK06547 hypothetical protein; 94.8 0.04 8.7E-07 55.8 5.2 34 168-201 6-39 (172)
295 TIGR00959 ffh signal recogniti 94.8 0.26 5.7E-06 57.5 12.5 89 176-267 98-192 (428)
296 cd03115 SRP The signal recogni 94.8 0.14 3.1E-06 52.4 9.4 25 179-203 2-26 (173)
297 cd01394 radB RadB. The archaea 94.8 0.12 2.5E-06 55.5 9.1 43 176-220 18-60 (218)
298 PRK14974 cell division protein 94.8 0.29 6.2E-06 55.3 12.3 90 176-268 139-233 (336)
299 PRK04301 radA DNA repair and r 94.8 0.12 2.6E-06 58.7 9.6 57 176-233 101-161 (317)
300 PRK15455 PrkA family serine pr 94.8 0.033 7.3E-07 65.4 5.1 46 157-202 77-128 (644)
301 cd01135 V_A-ATPase_B V/A-type 94.8 0.18 4E-06 54.3 10.2 93 177-269 69-178 (276)
302 COG1102 Cmk Cytidylate kinase 94.7 0.08 1.7E-06 50.8 6.5 45 179-236 2-46 (179)
303 PRK09183 transposase/IS protei 94.7 0.11 2.4E-06 56.8 8.7 25 178-202 103-127 (259)
304 KOG0729 26S proteasome regulat 94.7 0.16 3.5E-06 52.4 8.9 95 154-269 175-282 (435)
305 TIGR02236 recomb_radA DNA repa 94.7 0.14 3.1E-06 58.1 9.9 57 176-233 94-154 (310)
306 PF00006 ATP-synt_ab: ATP synt 94.7 0.19 4.1E-06 52.7 9.8 87 178-268 16-116 (215)
307 KOG0736 Peroxisome assembly fa 94.6 0.14 3.1E-06 61.2 9.5 92 157-269 673-776 (953)
308 TIGR02858 spore_III_AA stage I 94.6 0.099 2.1E-06 57.1 7.8 123 166-305 99-232 (270)
309 PRK12678 transcription termina 94.6 0.074 1.6E-06 62.3 7.0 92 177-269 416-515 (672)
310 PRK07667 uridine kinase; Provi 94.6 0.054 1.2E-06 56.5 5.6 37 166-202 4-42 (193)
311 KOG0727 26S proteasome regulat 94.6 1.7 3.8E-05 44.8 15.7 48 155-202 154-214 (408)
312 COG0468 RecA RecA/RadA recombi 94.5 0.26 5.6E-06 53.6 10.7 89 176-267 59-151 (279)
313 COG0541 Ffh Signal recognition 94.5 2.3 5E-05 48.4 18.2 59 176-237 99-159 (451)
314 PRK08533 flagellar accessory p 94.5 0.21 4.5E-06 53.7 10.0 48 177-228 24-71 (230)
315 KOG2739 Leucine-rich acidic nu 94.5 0.023 5E-07 59.3 2.5 81 556-636 61-151 (260)
316 PTZ00035 Rad51 protein; Provis 94.5 0.16 3.6E-06 57.6 9.7 92 176-268 117-224 (337)
317 cd02027 APSK Adenosine 5'-phos 94.4 0.11 2.3E-06 51.6 7.1 24 179-202 1-24 (149)
318 cd03214 ABC_Iron-Siderophores_ 94.4 0.11 2.4E-06 53.5 7.5 120 176-305 24-161 (180)
319 TIGR03305 alt_F1F0_F1_bet alte 94.4 0.21 4.5E-06 58.1 10.3 92 177-269 138-244 (449)
320 PRK12597 F0F1 ATP synthase sub 94.4 0.14 3E-06 60.0 8.9 93 176-269 142-249 (461)
321 TIGR00554 panK_bact pantothena 94.4 0.17 3.7E-06 55.7 9.2 28 175-202 60-87 (290)
322 TIGR00064 ftsY signal recognit 94.4 0.28 6E-06 54.0 10.8 89 175-267 70-164 (272)
323 COG5238 RNA1 Ran GTPase-activa 94.4 0.018 4E-07 59.6 1.4 93 557-650 27-141 (388)
324 COG1428 Deoxynucleoside kinase 94.4 0.032 6.9E-07 56.5 3.1 48 177-229 4-51 (216)
325 cd03216 ABC_Carb_Monos_I This 94.3 0.058 1.3E-06 54.5 5.0 115 177-305 26-145 (163)
326 PF13238 AAA_18: AAA domain; P 94.3 0.037 8.1E-07 53.5 3.4 22 180-201 1-22 (129)
327 PF00485 PRK: Phosphoribulokin 94.2 0.041 8.9E-07 57.5 3.8 25 179-203 1-25 (194)
328 cd02019 NK Nucleoside/nucleoti 94.2 0.04 8.6E-07 46.1 3.0 23 179-201 1-23 (69)
329 PF00560 LRR_1: Leucine Rich R 94.2 0.024 5.1E-07 34.9 1.2 21 561-581 1-21 (22)
330 cd01125 repA Hexameric Replica 94.2 0.15 3.1E-06 55.5 8.1 24 179-202 3-26 (239)
331 cd02025 PanK Pantothenate kina 94.2 0.21 4.5E-06 53.2 9.0 41 179-219 1-41 (220)
332 PRK13531 regulatory ATPase Rav 94.2 0.066 1.4E-06 62.3 5.5 50 157-208 21-70 (498)
333 cd03281 ABC_MSH5_euk MutS5 hom 94.2 0.027 6E-07 59.5 2.3 24 177-200 29-52 (213)
334 KOG2123 Uncharacterized conser 94.2 0.0079 1.7E-07 62.4 -1.7 100 559-659 18-123 (388)
335 PF05659 RPW8: Arabidopsis bro 94.1 0.65 1.4E-05 45.2 11.4 108 7-129 6-113 (147)
336 PRK09280 F0F1 ATP synthase sub 94.1 0.3 6.5E-06 57.0 10.6 92 177-269 144-250 (463)
337 PRK04328 hypothetical protein; 94.0 0.23 5E-06 54.1 9.3 41 176-218 22-62 (249)
338 KOG0733 Nuclear AAA ATPase (VC 94.0 0.14 3E-06 59.6 7.7 157 177-357 545-718 (802)
339 PF03308 ArgK: ArgK protein; 94.0 0.11 2.4E-06 54.8 6.3 56 165-220 15-72 (266)
340 KOG0738 AAA+-type ATPase [Post 94.0 0.16 3.4E-06 55.9 7.6 26 177-202 245-270 (491)
341 PF13481 AAA_25: AAA domain; P 94.0 0.26 5.7E-06 51.5 9.4 90 178-269 33-153 (193)
342 PF07728 AAA_5: AAA domain (dy 93.9 0.14 2.9E-06 50.3 6.6 42 180-226 2-43 (139)
343 COG3640 CooC CO dehydrogenase 93.9 0.11 2.3E-06 53.4 5.8 50 179-236 2-51 (255)
344 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.9 0.14 3E-06 50.4 6.7 103 176-305 25-130 (144)
345 PRK06067 flagellar accessory p 93.9 0.32 7E-06 52.7 10.1 87 176-267 24-130 (234)
346 PRK05480 uridine/cytidine kina 93.9 0.055 1.2E-06 57.5 4.0 27 175-201 4-30 (209)
347 PTZ00301 uridine kinase; Provi 93.9 0.056 1.2E-06 56.7 3.9 26 177-202 3-28 (210)
348 COG0488 Uup ATPase components 93.9 0.8 1.7E-05 55.1 14.0 26 176-201 347-372 (530)
349 cd03223 ABCD_peroxisomal_ALDP 93.8 0.17 3.7E-06 51.3 7.3 123 176-317 26-160 (166)
350 TIGR03878 thermo_KaiC_2 KaiC d 93.8 0.29 6.4E-06 53.6 9.6 40 176-217 35-74 (259)
351 PRK00889 adenylylsulfate kinas 93.8 0.17 3.6E-06 52.0 7.3 27 176-202 3-29 (175)
352 PF06309 Torsin: Torsin; Inte 93.8 0.61 1.3E-05 43.5 10.0 44 158-201 27-77 (127)
353 KOG3347 Predicted nucleotide k 93.8 0.1 2.2E-06 49.2 4.9 69 177-255 7-75 (176)
354 PRK06995 flhF flagellar biosyn 93.7 0.28 6E-06 57.9 9.7 86 177-266 256-343 (484)
355 KOG0652 26S proteasome regulat 93.7 2.1 4.6E-05 44.4 14.5 50 152-201 167-229 (424)
356 PF06745 KaiC: KaiC; InterPro 93.7 0.18 3.8E-06 54.4 7.6 90 176-269 18-127 (226)
357 PRK08233 hypothetical protein; 93.7 0.056 1.2E-06 56.0 3.7 26 177-202 3-28 (182)
358 cd03228 ABCC_MRP_Like The MRP 93.7 0.14 3E-06 52.3 6.5 26 176-201 27-52 (171)
359 TIGR00235 udk uridine kinase. 93.7 0.061 1.3E-06 56.9 3.9 28 175-202 4-31 (207)
360 TIGR01039 atpD ATP synthase, F 93.7 0.44 9.6E-06 55.4 11.0 93 176-269 142-249 (461)
361 cd01121 Sms Sms (bacterial rad 93.7 0.15 3.2E-06 58.6 7.3 87 177-268 82-169 (372)
362 PF03205 MobB: Molybdopterin g 93.7 0.13 2.8E-06 50.1 5.8 39 178-217 1-39 (140)
363 PRK14721 flhF flagellar biosyn 93.7 0.43 9.3E-06 55.4 10.9 87 177-266 191-278 (420)
364 COG1419 FlhF Flagellar GTP-bin 93.7 0.67 1.5E-05 52.5 12.0 98 165-266 187-290 (407)
365 PRK08972 fliI flagellum-specif 93.6 0.23 4.9E-06 57.4 8.5 90 176-269 161-264 (444)
366 PF13671 AAA_33: AAA domain; P 93.6 0.065 1.4E-06 52.9 3.7 23 179-201 1-23 (143)
367 PRK09519 recA DNA recombinatio 93.6 0.25 5.5E-06 61.4 9.4 86 176-268 59-149 (790)
368 COG1703 ArgK Putative periplas 93.5 0.15 3.1E-06 54.6 6.2 59 166-224 38-98 (323)
369 PRK14723 flhF flagellar biosyn 93.5 0.49 1.1E-05 58.8 11.7 87 177-267 185-273 (767)
370 PRK07132 DNA polymerase III su 93.5 1.7 3.8E-05 48.3 15.0 166 166-362 6-184 (299)
371 cd03247 ABCC_cytochrome_bd The 93.5 0.13 2.8E-06 52.9 5.9 26 176-201 27-52 (178)
372 PRK05439 pantothenate kinase; 93.5 0.44 9.5E-06 52.9 10.1 45 175-219 84-128 (311)
373 COG0572 Udk Uridine kinase [Nu 93.4 0.075 1.6E-06 54.8 3.7 27 176-202 7-33 (218)
374 PRK06762 hypothetical protein; 93.4 0.073 1.6E-06 54.2 3.8 25 177-201 2-26 (166)
375 TIGR00150 HI0065_YjeE ATPase, 93.4 0.14 3.1E-06 48.7 5.4 39 164-202 7-47 (133)
376 TIGR01069 mutS2 MutS2 family p 93.3 0.075 1.6E-06 67.3 4.5 191 176-383 321-521 (771)
377 cd01124 KaiC KaiC is a circadi 93.3 0.23 5.1E-06 51.6 7.6 45 179-227 1-45 (187)
378 CHL00060 atpB ATP synthase CF1 93.3 0.33 7.1E-06 56.9 9.2 92 177-269 161-274 (494)
379 cd00544 CobU Adenosylcobinamid 93.3 0.25 5.4E-06 49.9 7.3 81 180-267 2-83 (169)
380 COG4088 Predicted nucleotide k 93.3 0.17 3.8E-06 50.5 5.8 27 178-204 2-28 (261)
381 KOG0473 Leucine-rich repeat pr 93.2 0.0063 1.4E-07 61.4 -4.1 90 550-639 32-122 (326)
382 PF13245 AAA_19: Part of AAA d 93.2 0.24 5.1E-06 42.2 5.9 26 176-201 9-34 (76)
383 PRK03839 putative kinase; Prov 93.2 0.075 1.6E-06 54.9 3.5 24 179-202 2-25 (180)
384 PRK05342 clpX ATP-dependent pr 93.2 0.24 5.1E-06 57.8 7.9 45 157-201 72-132 (412)
385 cd00561 CobA_CobO_BtuR ATP:cor 93.1 0.23 4.9E-06 49.1 6.5 117 178-303 3-139 (159)
386 PTZ00185 ATPase alpha subunit; 93.1 0.5 1.1E-05 55.1 10.1 92 177-269 189-301 (574)
387 TIGR03575 selen_PSTK_euk L-ser 93.1 0.32 7E-06 54.7 8.5 36 180-216 2-37 (340)
388 cd01132 F1_ATPase_alpha F1 ATP 93.1 0.51 1.1E-05 51.0 9.6 96 177-276 69-181 (274)
389 PF00910 RNA_helicase: RNA hel 93.1 0.072 1.6E-06 49.3 2.8 24 180-203 1-24 (107)
390 TIGR00390 hslU ATP-dependent p 93.0 0.23 5E-06 56.6 7.3 74 157-232 13-104 (441)
391 cd01122 GP4d_helicase GP4d_hel 93.0 0.67 1.5E-05 51.6 11.1 52 177-231 30-81 (271)
392 PRK08149 ATP synthase SpaL; Va 93.0 0.3 6.4E-06 56.7 8.2 90 176-269 150-253 (428)
393 TIGR01360 aden_kin_iso1 adenyl 92.9 0.091 2E-06 54.8 3.7 26 176-201 2-27 (188)
394 KOG0651 26S proteasome regulat 92.9 0.33 7.2E-06 51.9 7.6 27 177-203 166-192 (388)
395 cd02029 PRK_like Phosphoribulo 92.9 1.7 3.8E-05 46.6 13.1 25 179-203 1-25 (277)
396 PRK06002 fliI flagellum-specif 92.9 0.34 7.3E-06 56.4 8.5 90 177-269 165-266 (450)
397 cd01134 V_A-ATPase_A V/A-type 92.9 0.44 9.6E-06 53.0 9.0 57 168-228 147-205 (369)
398 COG1066 Sms Predicted ATP-depe 92.9 0.26 5.7E-06 55.1 7.2 87 177-269 93-180 (456)
399 PRK00625 shikimate kinase; Pro 92.9 0.085 1.8E-06 53.5 3.2 24 179-202 2-25 (173)
400 PRK13765 ATP-dependent proteas 92.8 0.2 4.3E-06 61.6 6.9 79 153-235 28-106 (637)
401 PRK03846 adenylylsulfate kinas 92.8 0.25 5.5E-06 51.8 6.9 29 174-202 21-49 (198)
402 KOG3864 Uncharacterized conser 92.8 0.023 4.9E-07 56.7 -0.9 69 1183-1254 122-190 (221)
403 PRK08927 fliI flagellum-specif 92.8 0.6 1.3E-05 54.3 10.3 90 176-269 157-260 (442)
404 cd03283 ABC_MutS-like MutS-lik 92.7 0.054 1.2E-06 56.6 1.7 24 178-201 26-49 (199)
405 PRK15429 formate hydrogenlyase 92.7 1.1 2.3E-05 57.2 13.6 46 156-201 376-423 (686)
406 TIGR01313 therm_gnt_kin carboh 92.7 0.2 4.4E-06 50.7 5.8 22 180-201 1-22 (163)
407 COG4608 AppF ABC-type oligopep 92.7 0.36 7.8E-06 51.4 7.6 122 176-306 38-174 (268)
408 PRK04040 adenylate kinase; Pro 92.6 0.11 2.4E-06 53.6 3.8 25 178-202 3-27 (188)
409 KOG0726 26S proteasome regulat 92.6 0.52 1.1E-05 49.6 8.5 95 153-269 182-290 (440)
410 PRK05917 DNA polymerase III su 92.6 1.8 3.9E-05 47.5 13.1 38 165-202 6-44 (290)
411 KOG0737 AAA+-type ATPase [Post 92.6 1.3 2.8E-05 49.1 11.8 27 176-202 126-152 (386)
412 KOG2170 ATPase of the AAA+ sup 92.6 0.37 8E-06 51.5 7.4 98 158-269 84-190 (344)
413 COG4240 Predicted kinase [Gene 92.5 0.88 1.9E-05 46.4 9.6 58 174-232 47-104 (300)
414 PF08433 KTI12: Chromatin asso 92.5 0.12 2.7E-06 56.4 4.2 26 178-203 2-27 (270)
415 TIGR01041 ATP_syn_B_arch ATP s 92.5 0.49 1.1E-05 55.5 9.3 93 177-269 141-250 (458)
416 PF12775 AAA_7: P-loop contain 92.5 0.13 2.8E-06 56.6 4.4 88 166-269 23-112 (272)
417 PRK10463 hydrogenase nickel in 92.5 0.21 4.6E-06 54.4 5.8 36 167-202 94-129 (290)
418 TIGR03881 KaiC_arch_4 KaiC dom 92.4 0.91 2E-05 49.0 10.8 40 176-217 19-58 (229)
419 PRK10416 signal recognition pa 92.4 1.2 2.6E-05 50.2 11.9 28 176-203 113-140 (318)
420 PRK06936 type III secretion sy 92.4 0.47 1E-05 55.1 8.8 90 176-269 161-264 (439)
421 COG0465 HflB ATP-dependent Zn 92.4 0.62 1.3E-05 55.9 10.0 49 155-203 149-209 (596)
422 TIGR01040 V-ATPase_V1_B V-type 92.4 0.61 1.3E-05 54.1 9.6 93 177-269 141-259 (466)
423 PRK10751 molybdopterin-guanine 92.4 0.14 3E-06 51.4 4.0 28 176-203 5-32 (173)
424 PRK00131 aroK shikimate kinase 92.3 0.12 2.7E-06 53.0 3.8 25 177-201 4-28 (175)
425 cd02024 NRK1 Nicotinamide ribo 92.3 0.098 2.1E-06 53.5 2.9 23 179-201 1-23 (187)
426 COG0563 Adk Adenylate kinase a 92.3 0.12 2.6E-06 52.6 3.4 24 179-202 2-25 (178)
427 COG2274 SunT ABC-type bacterio 92.2 6.6 0.00014 49.4 19.1 26 176-201 498-523 (709)
428 PRK05022 anaerobic nitric oxid 92.2 0.82 1.8E-05 55.8 11.3 46 156-201 187-234 (509)
429 PF07724 AAA_2: AAA domain (Cd 92.2 0.27 5.8E-06 49.8 5.9 43 177-220 3-45 (171)
430 KOG1532 GTPase XAB1, interacts 92.2 0.18 4E-06 52.5 4.5 29 176-204 18-46 (366)
431 PTZ00088 adenylate kinase 1; P 92.2 0.21 4.6E-06 53.2 5.3 24 179-202 8-31 (229)
432 COG0003 ArsA Predicted ATPase 92.1 0.29 6.2E-06 54.7 6.5 49 177-227 2-50 (322)
433 cd02023 UMPK Uridine monophosp 92.1 0.1 2.2E-06 54.9 2.8 23 179-201 1-23 (198)
434 KOG3864 Uncharacterized conser 92.1 0.042 9E-07 54.9 -0.1 71 803-876 120-190 (221)
435 TIGR02322 phosphon_PhnN phosph 92.1 0.12 2.7E-06 53.2 3.5 25 178-202 2-26 (179)
436 TIGR01359 UMP_CMP_kin_fam UMP- 92.1 0.11 2.3E-06 54.0 2.9 23 179-201 1-23 (183)
437 cd00267 ABC_ATPase ABC (ATP-bi 92.1 0.17 3.6E-06 50.9 4.2 115 177-306 25-144 (157)
438 PRK06851 hypothetical protein; 92.1 2.1 4.5E-05 48.9 13.2 44 174-218 211-254 (367)
439 TIGR01420 pilT_fam pilus retra 92.1 0.24 5.1E-06 56.9 5.9 112 176-304 121-232 (343)
440 TIGR02030 BchI-ChlI magnesium 92.0 0.23 4.9E-06 56.2 5.6 46 156-201 4-49 (337)
441 TIGR00382 clpX endopeptidase C 91.9 0.45 9.8E-06 55.2 8.0 45 157-201 78-140 (413)
442 PRK05201 hslU ATP-dependent pr 91.9 0.36 7.9E-06 55.2 7.0 76 157-232 16-107 (443)
443 PRK04196 V-type ATP synthase s 91.9 0.59 1.3E-05 55.1 9.0 92 177-269 143-252 (460)
444 PRK06217 hypothetical protein; 91.9 0.13 2.8E-06 53.2 3.2 34 179-213 3-38 (183)
445 CHL00206 ycf2 Ycf2; Provisiona 91.8 0.68 1.5E-05 62.1 10.1 26 177-202 1630-1655(2281)
446 PF03215 Rad17: Rad17 cell cyc 91.8 0.25 5.4E-06 59.3 5.8 51 161-215 24-79 (519)
447 TIGR02655 circ_KaiC circadian 91.8 0.56 1.2E-05 56.7 9.0 87 176-267 262-363 (484)
448 PRK00409 recombination and DNA 91.8 0.31 6.8E-06 62.0 7.1 183 175-383 325-526 (782)
449 PRK13949 shikimate kinase; Pro 91.8 0.15 3.2E-06 51.8 3.4 24 179-202 3-26 (169)
450 COG0529 CysC Adenylylsulfate k 91.7 0.66 1.4E-05 45.6 7.5 32 173-204 19-50 (197)
451 PRK09435 membrane ATPase/prote 91.7 1.3 2.9E-05 49.8 11.2 39 166-204 43-83 (332)
452 PRK13407 bchI magnesium chelat 91.7 0.22 4.9E-06 56.1 5.2 49 153-201 5-53 (334)
453 PLN02924 thymidylate kinase 91.7 0.67 1.5E-05 49.1 8.5 53 177-230 16-68 (220)
454 PRK14529 adenylate kinase; Pro 91.7 0.46 1E-05 50.2 7.1 84 179-268 2-87 (223)
455 TIGR03498 FliI_clade3 flagella 91.7 0.49 1.1E-05 55.0 7.9 90 176-269 139-242 (418)
456 PF02374 ArsA_ATPase: Anion-tr 91.7 0.3 6.5E-06 54.7 6.1 46 178-225 2-47 (305)
457 PF10236 DAP3: Mitochondrial r 91.6 10 0.00022 42.8 18.2 47 314-360 258-306 (309)
458 cd01136 ATPase_flagellum-secre 91.6 0.61 1.3E-05 52.2 8.4 90 176-269 68-171 (326)
459 cd00227 CPT Chloramphenicol (C 91.6 0.16 3.5E-06 52.1 3.6 24 178-201 3-26 (175)
460 TIGR00073 hypB hydrogenase acc 91.6 0.3 6.5E-06 51.7 5.7 32 170-201 15-46 (207)
461 cd02020 CMPK Cytidine monophos 91.6 0.14 3E-06 50.9 3.0 23 179-201 1-23 (147)
462 PTZ00494 tuzin-like protein; P 91.6 3.9 8.4E-05 46.6 14.1 166 152-333 367-544 (664)
463 COG1224 TIP49 DNA helicase TIP 91.6 0.75 1.6E-05 50.3 8.5 55 155-209 38-97 (450)
464 COG0467 RAD55 RecA-superfamily 91.6 0.25 5.5E-06 54.5 5.3 51 175-229 21-71 (260)
465 cd02028 UMPK_like Uridine mono 91.6 0.15 3.2E-06 52.4 3.2 24 179-202 1-24 (179)
466 cd02021 GntK Gluconate kinase 91.6 0.13 2.9E-06 51.2 2.9 23 179-201 1-23 (150)
467 PF13504 LRR_7: Leucine rich r 91.5 0.096 2.1E-06 29.8 1.0 16 606-621 2-17 (17)
468 PRK11823 DNA repair protein Ra 91.5 0.45 9.8E-06 56.5 7.7 82 177-267 80-166 (446)
469 TIGR00176 mobB molybdopterin-g 91.5 0.23 5E-06 49.4 4.4 33 179-212 1-33 (155)
470 PRK05057 aroK shikimate kinase 91.5 0.17 3.7E-06 51.6 3.5 25 177-201 4-28 (172)
471 PRK05922 type III secretion sy 91.4 0.83 1.8E-05 53.1 9.4 90 176-269 156-259 (434)
472 COG2607 Predicted ATPase (AAA+ 91.4 1.4 2.9E-05 45.7 9.6 50 154-203 58-111 (287)
473 COG0396 sufC Cysteine desulfur 91.4 0.41 8.9E-06 49.2 6.0 26 176-201 29-54 (251)
474 PRK13947 shikimate kinase; Pro 91.4 0.16 3.4E-06 52.0 3.3 24 179-202 3-26 (171)
475 COG3854 SpoIIIAA ncharacterize 91.4 0.39 8.5E-06 49.0 5.8 119 168-305 128-256 (308)
476 TIGR02788 VirB11 P-type DNA tr 91.4 0.17 3.8E-06 57.0 3.8 93 177-275 144-236 (308)
477 TIGR00416 sms DNA repair prote 91.4 0.48 1E-05 56.3 7.6 88 176-268 93-181 (454)
478 TIGR03263 guanyl_kin guanylate 91.3 0.14 3.1E-06 52.8 2.9 24 178-201 2-25 (180)
479 KOG0735 AAA+-type ATPase [Post 91.3 0.82 1.8E-05 54.6 9.1 92 157-269 668-772 (952)
480 COG1936 Predicted nucleotide k 91.3 0.16 3.4E-06 49.7 2.9 20 179-198 2-21 (180)
481 CHL00059 atpA ATP synthase CF1 91.3 0.99 2.2E-05 52.9 9.8 89 177-269 141-245 (485)
482 CHL00081 chlI Mg-protoporyphyr 91.3 0.24 5.1E-06 56.0 4.7 48 155-202 16-63 (350)
483 PF03193 DUF258: Protein of un 91.3 0.28 6.1E-06 48.4 4.6 34 165-201 26-59 (161)
484 PRK14530 adenylate kinase; Pro 91.2 0.18 3.8E-06 53.8 3.5 24 178-201 4-27 (215)
485 PF07726 AAA_3: ATPase family 91.2 0.12 2.6E-06 48.2 1.9 28 180-209 2-29 (131)
486 cd00820 PEPCK_HprK Phosphoenol 91.1 0.19 4.2E-06 45.7 3.1 22 177-198 15-36 (107)
487 PF00625 Guanylate_kin: Guanyl 91.1 0.25 5.3E-06 51.1 4.4 38 177-216 2-39 (183)
488 TIGR03324 alt_F1F0_F1_al alter 91.1 1.2 2.6E-05 52.5 10.3 89 177-269 162-266 (497)
489 TIGR00708 cobA cob(I)alamin ad 91.1 0.84 1.8E-05 45.7 7.8 117 177-303 5-141 (173)
490 TIGR01287 nifH nitrogenase iro 91.1 0.32 6.8E-06 54.3 5.6 39 178-218 1-39 (275)
491 cd00071 GMPK Guanosine monopho 91.1 0.15 3.3E-06 49.6 2.6 23 179-201 1-23 (137)
492 PRK05688 fliI flagellum-specif 91.0 0.7 1.5E-05 53.9 8.3 90 176-269 167-270 (451)
493 PRK00300 gmk guanylate kinase; 91.0 0.19 4.2E-06 53.1 3.6 26 176-201 4-29 (205)
494 smart00072 GuKc Guanylate kina 91.0 0.71 1.5E-05 47.8 7.6 25 177-201 2-26 (184)
495 TIGR03496 FliI_clade1 flagella 91.0 0.55 1.2E-05 54.6 7.4 90 176-269 136-239 (411)
496 PF06068 TIP49: TIP49 C-termin 90.9 0.33 7.2E-06 54.0 5.3 52 156-207 24-80 (398)
497 PRK12339 2-phosphoglycerate ki 90.9 0.22 4.7E-06 51.8 3.7 25 177-201 3-27 (197)
498 COG1124 DppF ABC-type dipeptid 90.9 0.18 3.9E-06 52.3 3.1 27 176-202 32-58 (252)
499 PRK07721 fliI flagellum-specif 90.9 0.94 2E-05 53.2 9.3 91 175-269 156-260 (438)
500 PRK15453 phosphoribulokinase; 90.9 1.2 2.6E-05 48.3 9.2 27 176-202 4-30 (290)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2e-84 Score=798.45 Aligned_cols=795 Identities=27% Similarity=0.392 Sum_probs=568.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhcCcc--------cc---------cc
Q 000679 37 VEELRTLDKELAYKREMVEQPVIQARRQGDEIYKRVEDWLNNVDDFTEDVVKSITGGED--------EA---------KK 99 (1355)
Q Consensus 37 ~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~~wl~~~~~~~~d~~~~~~~~~~--------~~---------~~ 99 (1355)
+.+.++.+..|++.+..++.++++|+++ +.....+..|...+++++|+ +++.+.... .+ +.
T Consensus 23 ~~~~~~~i~~Lk~~L~~l~~~l~d~~a~-~~~~~~~~~~~e~~~~~~~~-~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~ 100 (889)
T KOG4658|consen 23 LDGKDNYILELKENLKALQSALEDLDAK-RDDLERRVNWEEDVGDLVYL-AEDIIWLFLVEEIERKANDLLSTRSVERQR 100 (889)
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHhhhhHHHHHH
Confidence 3556678999999999999999999998 55778899999999999999 776543211 00 01
Q ss_pred ccccCCC-chhhhhhhHHHHHHHHHHHHHhhhcCCCcccccccCCCC-CccccccCCccccchhHHHHHHHHHHhhcCCc
Q 000679 100 RCFKGLC-PNLIKRYSLGKKAVKAAKEGADLLGTGNFGTVSFRPTVE-RTTPVSYTAYEQFDSRMKIFQNIMEVLKDTNV 177 (1355)
Q Consensus 100 ~~~~~~~-~~~~~~~~~~~~i~~~~~~l~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~gr~~~~~~l~~~L~~~~~ 177 (1355)
-|+.+++ .++...+.+++++.++...++.+..++.|..+...+.+. .....+...... +|.++.++++.+.|.+++.
T Consensus 101 ~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~ 179 (889)
T KOG4658|consen 101 LCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDDV 179 (889)
T ss_pred HhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCCC
Confidence 1222323 245556677888888888888886666666554322111 111111122223 8999999999999998777
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHh-hhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccC--CCHHHHHHHHHHHHh
Q 000679 178 GMIGVYGVNGVGKTTLVKQIAMQVI-EDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQN--ENVFQRAEKLRQRLK 254 (1355)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~l~~~l~ 254 (1355)
.+++|+||||+||||||+.++|+.. ++.+||.++||.||+.++...++.+|++.++...... ....+....+.+.|+
T Consensus 180 ~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~ 259 (889)
T KOG4658|consen 180 GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLE 259 (889)
T ss_pred CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhc
Confidence 9999999999999999999999988 8999999999999999999999999999888744332 234677888888888
Q ss_pred cCCeEEEEEeCccccccccccCCCCCCccccCCCCCCCcEEEEEeCchhhhhhcCCCcceEecCCCCHHHHHHHHHHHhC
Q 000679 255 NVKRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVG 334 (1355)
Q Consensus 255 ~~k~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 334 (1355)
. |||+||+||||+..+|+.++.|+|. ..+||||++|||+..||...|++...++++.|+++|||.||++.++
T Consensus 260 ~-krfllvLDDIW~~~dw~~I~~~~p~-------~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~ 331 (889)
T KOG4658|consen 260 G-KRFLLVLDDIWEEVDWDKIGVPFPS-------RENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVG 331 (889)
T ss_pred c-CceEEEEecccccccHHhcCCCCCC-------ccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhc
Confidence 5 9999999999999999999999998 8899999999999999986688899999999999999999999996
Q ss_pred CC--CCCcchHHHHHHHHHHhCCChHHHHHHHHHHhcC-ChHHHHHHHHHHhcccccccccchhhhhhhhhhccccCCch
Q 000679 335 DS--AKASDFRVIADEIVRRCGGLPVAIKTIANALKNK-RLYVWNDSLERLRNSTSRQIHGMEENVYSSIELSYSFLKSE 411 (1355)
Q Consensus 335 ~~--~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~ 411 (1355)
.. ...+.++++|++|+++|+|+|||++++|+.|+.| +.++|+++.+.+.+....+.+++.+.+++++.+||+.||++
T Consensus 332 ~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~ 411 (889)
T KOG4658|consen 332 PNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEE 411 (889)
T ss_pred cccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHH
Confidence 54 3345589999999999999999999999999999 88899999998866545566677888999999999999955
Q ss_pred hHHHHHHHhcccCCCCccChHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHhccceecCCC----CccchhhHHHHH
Q 000679 412 EEKSMFRLCALRKDGSPIPIDDLMRYGIGLGLFSNVRTSEAARNRVYTLVDNLKASSLLLDGDK----DEVKLHDIIYAV 487 (1355)
Q Consensus 412 ~~k~cf~~~s~fp~~~~i~~~~l~~~w~a~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~----~~~~mh~lv~~~ 487 (1355)
+|.||+|||+||+||.|+++.|+.+|+||||+.+....+.+++.+++|+++|++++|++.... ..|+|||+|||+
T Consensus 412 -lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~ 490 (889)
T KOG4658|consen 412 -LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREM 490 (889)
T ss_pred -HHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHH
Confidence 999999999999999999999999999999999877778899999999999999999987653 239999999999
Q ss_pred HHHHhc-----cccEEEeccCC------ccccccccceEEEeCCCCCCCCCCCccCCCceEEEEeeccCCCCcccChhhh
Q 000679 488 AVSIAR-----DEFMFNIQSKD------ELKDKTQKDSIAISLPNRDIDELPERLECPKLSLFLLFAKYDSSLKIPDLFF 556 (1355)
Q Consensus 488 ~~~~~~-----~~~~~~~~~~~------~~~~~~~~~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~ 556 (1355)
|.++|. +++++ +..+. +...| ..+||++++++.+..++....+++|++|.+..+......++..+|
T Consensus 491 al~ias~~~~~~e~~i-v~~~~~~~~~~~~~~~--~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff 567 (889)
T KOG4658|consen 491 ALWIASDFGKQEENQI-VSDGVGLSEIPQVKSW--NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFF 567 (889)
T ss_pred HHHHhccccccccceE-EECCcCccccccccch--hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHH
Confidence 999998 66644 33221 12223 238999999999999999999999999999988333678888999
Q ss_pred cCCCcceEEEecCC-CccccCcccccccCCcEEEecCCCCCC-ccccccccccceeecccC-CCCccchhhhccccCcEE
Q 000679 557 EGMNELRVVHFTRT-CFLSLPSSLVCLISLRTLSLEGCQVGD-VAIVGQLKKLEILSFRNS-DIQQLPREIGQLVQLRLL 633 (1355)
Q Consensus 557 ~~l~~Lr~L~L~~~-~~~~lp~~i~~L~~Lr~L~L~~~~i~~-p~~i~~L~~L~~L~L~~~-~l~~lP~~i~~L~~L~~L 633 (1355)
..|+.||||||++| .+.++|++|+.|.|||||+++++.+.. |..+++|+.|.|||+..+ .+..+|..+..|.+||+|
T Consensus 568 ~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 568 RSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVL 647 (889)
T ss_pred hhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEE
Confidence 99999999999975 456688887777777777777666555 555555555555555554 222333333335555555
Q ss_pred eccCcchhhccchhHHhhhccccccccCCCccccccccCCCccchhhhcCCCCCCeEEEEeccccCCChhh-hhcccceE
Q 000679 634 DLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTLEIHIRDARIMPQDL-ISMKLEIF 712 (1355)
Q Consensus 634 ~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~-~~~~L~~l 712 (1355)
.+.. ... ..+...+.++..|.+|+.+.+..... .+-..+ ...+|.+
T Consensus 648 ~l~~-------------------------s~~------~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~- 694 (889)
T KOG4658|consen 648 RLPR-------------------------SAL------SNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRS- 694 (889)
T ss_pred Eeec-------------------------ccc------ccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHH-
Confidence 4443 210 01233444555555555555532221 000000 0001110
Q ss_pred EEEEecccccccccccccEEEeccccchhhhhhhHHHHhcccceEEEccccCcccccccccccccccCCcEEeeecCCce
Q 000679 713 RMFIGNVVDWYHKFERSRLVKLDKLEKNILLGQGMKMFLKRTEDLYLHDLKGFQNVVHELDDGEVFSELKHLHVEHSYEI 792 (1355)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~l~L~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~ 792 (1355)
....+.+.+ +... ....+++.+.+|+.|.|.+|...
T Consensus 695 ----------------------------------------~~~~l~~~~---~~~~-~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 695 ----------------------------------------LLQSLSIEG---CSKR-TLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred ----------------------------------------HhHhhhhcc---cccc-eeecccccccCcceEEEEcCCCc
Confidence 001111111 0000 11223668889999999988775
Q ss_pred eEeccccCccccc-CCcccceeccccccccchhcccCCCCCCCCCCccEEEEecCCCcccccchhhHHhcccccEEEEcc
Q 000679 793 LHIVSSIGQVCCK-VFPLLESLSLCRLFNLEKICHNRLHEDESFSNLRIIKVGECDKLRHLFSFSMAKNLLRLQKISVFD 871 (1355)
Q Consensus 793 ~~i~~~~~~~~~~-~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~ 871 (1355)
+............ .|+++..+.+.+|..+....+ ....|+|+.|.+..|+.++.+.+ ....+..++++.+.
T Consensus 731 e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~-----~~f~~~L~~l~l~~~~~~e~~i~--~~k~~~~l~~~i~~- 802 (889)
T KOG4658|consen 731 EIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTW-----LLFAPHLTSLSLVSCRLLEDIIP--KLKALLELKELILP- 802 (889)
T ss_pred hhhcccccccchhhhHHHHHHHHhhccccccccch-----hhccCcccEEEEecccccccCCC--HHHHhhhcccEEec-
Confidence 4332111111112 266777777777766655443 23457888888888887777655 24445555542222
Q ss_pred ccchhhhhccccccccccccccCcccCCCCCcccccCCccee-ccccccccccccCCCCCCCCcCCCccEEEEecccccc
Q 000679 872 CKSLEIIVGLDMEKQRTTLGFNGITTKDDPDEKVIFPSLEEL-DLYSLITIEKLWPKQFQGMSSCQNLTKVTVAFCDRLK 950 (1355)
Q Consensus 872 c~~l~~i~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~L~~L-~l~~~~~l~~~~~~~~~~l~~l~~L~~L~l~~C~~L~ 950 (1355)
|++++.+ .+.+.+.+..+..... .++.|+.+.+..||++.
T Consensus 803 -----------------------------------f~~~~~l~~~~~l~~l~~i~~~~l----~~~~l~~~~ve~~p~l~ 843 (889)
T KOG4658|consen 803 -----------------------------------FNKLEGLRMLCSLGGLPQLYWLPL----SFLKLEELIVEECPKLG 843 (889)
T ss_pred -----------------------------------ccccccceeeecCCCCceeEeccc----CccchhheehhcCcccc
Confidence 3334444 2444444443332222 24458888888888876
Q ss_pred cccchhHHhhhcccceeEEeec-cccceec
Q 000679 951 YLFSYSMVNSLVQLQHLEICYC-WSMEGVV 979 (1355)
Q Consensus 951 ~l~~~~~~~~l~~L~~L~l~~c-~~l~~i~ 979 (1355)
.+ |.+.++.+.+| ..+...+
T Consensus 844 ~~---------P~~~~~~i~~~~~~~~~~~ 864 (889)
T KOG4658|consen 844 KL---------PLLSTLTIVGCEEKLKEYP 864 (889)
T ss_pred cC---------ccccccceeccccceeecC
Confidence 64 55777777776 5554443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1e-60 Score=627.61 Aligned_cols=686 Identities=20% Similarity=0.300 Sum_probs=488.0
Q ss_pred CccccchhHHHHHHHHHHhh--cCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEe---CCCC---------
Q 000679 154 AYEQFDSRMKIFQNIMEVLK--DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEV---TQTP--------- 219 (1355)
Q Consensus 154 ~~~~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~---s~~~--------- 219 (1355)
+..+++||+..++++..+|. .+++++|+||||||+||||||+++|+... .+|++.+|+.- +...
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS--RQFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh--hcCCeEEEeeccccccchhhccccccc
Confidence 44578999999999998885 45789999999999999999999999864 56998888742 1110
Q ss_pred --C-HHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCccccccccccCCCCCCccccCCCCCCCcEEE
Q 000679 220 --D-LQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVL 296 (1355)
Q Consensus 220 --~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~il 296 (1355)
. ...++++++.++........ .....+++++.. +|+||||||||+..+|+.+...... .++||+||
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~~~~---~~~~~~~~~L~~-krvLLVLDdv~~~~~l~~L~~~~~~-------~~~GsrII 328 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKDIKI---YHLGAMEERLKH-RKVLIFIDDLDDQDVLDALAGQTQW-------FGSGSRII 328 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCCccc---CCHHHHHHHHhC-CeEEEEEeCCCCHHHHHHHHhhCcc-------CCCCcEEE
Confidence 1 12334444444322211100 112456777775 9999999999999999988765544 67899999
Q ss_pred EEeCchhhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCC-CCCcchHHHHHHHHHHhCCChHHHHHHHHHHhcCChHHH
Q 000679 297 LTSRNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDS-AKASDFRVIADEIVRRCGGLPVAIKTIANALKNKRLYVW 375 (1355)
Q Consensus 297 vTtR~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~w 375 (1355)
||||++.++. ..+..++|+++.+++++||+||+++|+.. ..++++.+++++|+++|+|+|||++++|++|+.++..+|
T Consensus 329 iTTrd~~vl~-~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W 407 (1153)
T PLN03210 329 VITKDKHFLR-AHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDW 407 (1153)
T ss_pred EEeCcHHHHH-hcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHH
Confidence 9999999986 46677899999999999999999999543 345578899999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccccchhhhhhhhhhccccCCchhHHHHHHHhcccCCCCccChHHHHHHHhhcCCCCCCcchHHHHH
Q 000679 376 NDSLERLRNSTSRQIHGMEENVYSSIELSYSFLKSEEEKSMFRLCALRKDGSPIPIDDLMRYGIGLGLFSNVRTSEAARN 455 (1355)
Q Consensus 376 ~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~l~~~w~a~g~~~~~~~~~~~~~ 455 (1355)
++++++++.. .+..+..+|++||+.|+++..|.||+++|.|+.+..++ .+..|++.+....
T Consensus 408 ~~~l~~L~~~-------~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~--------- 468 (1153)
T PLN03210 408 MDMLPRLRNG-------LDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV--------- 468 (1153)
T ss_pred HHHHHHHHhC-------ccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc---------
Confidence 9999998542 23468999999999998754699999999999876553 4667877664331
Q ss_pred HHHHHHHHHHhccceecCCCCccchhhHHHHHHHHHhcccc------EEEeccCCcc----ccccccceEEEeCCCCCCC
Q 000679 456 RVYTLVDNLKASSLLLDGDKDEVKLHDIIYAVAVSIARDEF------MFNIQSKDEL----KDKTQKDSIAISLPNRDID 525 (1355)
Q Consensus 456 ~~~~~~~~L~~~~l~~~~~~~~~~mh~lv~~~~~~~~~~~~------~~~~~~~~~~----~~~~~~~~r~lsl~~~~~~ 525 (1355)
...++.|+++||++.. .+.++|||++|++|+++++++. -+.+...+.. ......+++.+++....+.
T Consensus 469 --~~~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~ 545 (1153)
T PLN03210 469 --NIGLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEID 545 (1153)
T ss_pred --hhChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccc
Confidence 1238899999999875 3569999999999999996652 1111111100 0112233777777665554
Q ss_pred CCC----CccCCCceEEEEeeccC-----CCCcccChhhhcCCCcceEEEecCCCccccCcccccccCCcEEEecCCCCC
Q 000679 526 ELP----ERLECPKLSLFLLFAKY-----DSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVG 596 (1355)
Q Consensus 526 ~l~----~~~~~~~Lr~L~l~~~~-----~~~~~lp~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~ 596 (1355)
++. ...++++|+.|.+..+. .....+|+++..-...||+|++.++.+..+|..+ ...+|+.|+++++.+.
T Consensus 546 ~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~ 624 (1153)
T PLN03210 546 ELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE 624 (1153)
T ss_pred eeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc
Confidence 331 13467888888876541 1123466665333457899999988888888877 5688999999998888
Q ss_pred C-ccccccccccceeecccC-CCCccchhhhccccCcEEeccCcchhhccchhHHhhhccccccccCCCccccccccCCC
Q 000679 597 D-VAIVGQLKKLEILSFRNS-DIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGS 674 (1355)
Q Consensus 597 ~-p~~i~~L~~L~~L~L~~~-~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 674 (1355)
. +..+..+++|++|+|+++ .+..+|. ++.+++|++|++++|..+..+|.. ++++++|++|++++|...
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L-------- 694 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENL-------- 694 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCc--------
Confidence 7 788888899999999886 5777874 788889999999988888888877 888999999988877542
Q ss_pred ccchhhhcCCCCCCeEEEEecccc-CCChhhhhcccceEEEEEecccccccccccccEEEeccccchhhhhhhHHHHhcc
Q 000679 675 NASLVELKGLSKLTTLEIHIRDAR-IMPQDLISMKLEIFRMFIGNVVDWYHKFERSRLVKLDKLEKNILLGQGMKMFLKR 753 (1355)
Q Consensus 675 ~~~~~~L~~L~~L~~L~l~~~~~~-~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~L~~l~~~~~~~~~~~~~l~~ 753 (1355)
...+..+ ++++|+.|+++++... .+|. ...+
T Consensus 695 ~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~-----------------------------------------------~~~n 726 (1153)
T PLN03210 695 EILPTGI-NLKSLYRLNLSGCSRLKSFPD-----------------------------------------------ISTN 726 (1153)
T ss_pred CccCCcC-CCCCCCEEeCCCCCCcccccc-----------------------------------------------ccCC
Confidence 1111122 5777888877754311 1111 0234
Q ss_pred cceEEEccccCcccccccccccccccCCcEEeeecCCceeEecccc--CcccccCCcccceeccccccccchhcccCCCC
Q 000679 754 TEDLYLHDLKGFQNVVHELDDGEVFSELKHLHVEHSYEILHIVSSI--GQVCCKVFPLLESLSLCRLFNLEKICHNRLHE 831 (1355)
Q Consensus 754 L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~i~~~~--~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~ 831 (1355)
|+.|.+.+... ..++....+++|++|.+.++.......... .......+++|+.|.+.+++.+..++..
T Consensus 727 L~~L~L~~n~i-----~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s---- 797 (1153)
T PLN03210 727 ISWLDLDETAI-----EEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS---- 797 (1153)
T ss_pred cCeeecCCCcc-----ccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh----
Confidence 44454443321 122222346677777765543211100000 0001223578889999888877777654
Q ss_pred CCCCCCccEEEEecCCCcccccchhhHHhcccccEEEEccccchhhhhccccccccccccccCcccCCCCCcccccCCcc
Q 000679 832 DESFSNLRIIKVGECDKLRHLFSFSMAKNLLRLQKISVFDCKSLEIIVGLDMEKQRTTLGFNGITTKDDPDEKVIFPSLE 911 (1355)
Q Consensus 832 ~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~L~ 911 (1355)
.+.+++|+.|++++|++++.+|.. .++++|+.|.+++|..+..++. ..++|+
T Consensus 798 i~~L~~L~~L~Ls~C~~L~~LP~~---~~L~sL~~L~Ls~c~~L~~~p~-------------------------~~~nL~ 849 (1153)
T PLN03210 798 IQNLHKLEHLEIENCINLETLPTG---INLESLESLDLSGCSRLRTFPD-------------------------ISTNIS 849 (1153)
T ss_pred hhCCCCCCEEECCCCCCcCeeCCC---CCccccCEEECCCCCccccccc-------------------------cccccC
Confidence 567889999999999988888763 2688899999999887765441 246788
Q ss_pred eeccccccccccccCCCCCCCCcCCCccEEEEecccccccccchhHHhhhcccceeEEeecccccee
Q 000679 912 ELDLYSLITIEKLWPKQFQGMSSCQNLTKVTVAFCDRLKYLFSYSMVNSLVQLQHLEICYCWSMEGV 978 (1355)
Q Consensus 912 ~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i 978 (1355)
.|+++++ .++.+ +.++..+++|+.|++++|++++.++.. ...+++|+.+++++|.++..+
T Consensus 850 ~L~Ls~n-~i~~i----P~si~~l~~L~~L~L~~C~~L~~l~~~--~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 850 DLNLSRT-GIEEV----PWWIEKFSNLSFLDMNGCNNLQRVSLN--ISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred EeECCCC-CCccC----hHHHhcCCCCCEEECCCCCCcCccCcc--cccccCCCeeecCCCcccccc
Confidence 8888876 44443 334567889999999999999887652 356788999999999887654
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.7e-41 Score=381.59 Aligned_cols=277 Identities=32% Similarity=0.547 Sum_probs=225.5
Q ss_pred hHHHHHHHHHHhhc--CCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccc-
Q 000679 161 RMKIFQNIMEVLKD--TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFK- 237 (1355)
Q Consensus 161 r~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~- 237 (1355)
|+.++++|.++|.+ ++.++|+|+||||+||||||++++++...+.+|+.++|+.++...+..+++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999997 789999999999999999999999997788999999999999999999999999999988743
Q ss_pred --cCCCHHHHHHHHHHHHhcCCeEEEEEeCccccccccccCCCCCCccccCCCCCCCcEEEEEeCchhhhhhcCCCcceE
Q 000679 238 --QNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCNDMNSQKFF 315 (1355)
Q Consensus 238 --~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~~~~~~~~~ 315 (1355)
...+..+....+.+.|.+ +++||||||||+...|+.+...++. ...|++||||||+..++.........+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~-~~~LlVlDdv~~~~~~~~l~~~~~~-------~~~~~kilvTTR~~~v~~~~~~~~~~~ 152 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKD-KRCLLVLDDVWDEEDLEELREPLPS-------FSSGSKILVTTRDRSVAGSLGGTDKVI 152 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCC-TSEEEEEEEE-SHHHH-------HC-------HHSS-EEEEEESCGGGGTTHHSCEEEE
T ss_pred cccccccccccccchhhhcc-ccceeeeeeeccccccccccccccc-------ccccccccccccccccccccccccccc
Confidence 235677788899999986 8999999999999999988877766 678999999999998875322336799
Q ss_pred ecCCCCHHHHHHHHHHHhCCCC--CCcchHHHHHHHHHHhCCChHHHHHHHHHHhcC-ChHHHHHHHHHHhccccccccc
Q 000679 316 LIEVLSYEEAWCLFEKIVGDSA--KASDFRVIADEIVRRCGGLPVAIKTIANALKNK-RLYVWNDSLERLRNSTSRQIHG 392 (1355)
Q Consensus 316 ~l~~L~~~~~~~lf~~~~~~~~--~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~-~~~~w~~~l~~l~~~~~~~~~~ 392 (1355)
++++|+++||++||.+.++... ..+..++.+++|+++|+|+||||+++|++|+.+ +..+|+.+++++..... +..+
T Consensus 153 ~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~-~~~~ 231 (287)
T PF00931_consen 153 ELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLR-ESRD 231 (287)
T ss_dssp ECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHT-CSSG
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 9999999999999999996533 445567789999999999999999999999776 78999999988754332 2233
Q ss_pred chhhhhhhhhhccccCCchhHHHHHHHhcccCCCCccChHHHHHHHhhcCCCCCC
Q 000679 393 MEENVYSSIELSYSFLKSEEEKSMFRLCALRKDGSPIPIDDLMRYGIGLGLFSNV 447 (1355)
Q Consensus 393 ~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~l~~~w~a~g~~~~~ 447 (1355)
....+..++.+||+.||++ +|+||+|||+||+++.|+++.++++|+++|||+..
T Consensus 232 ~~~~~~~~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 232 YDRSVFSALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp SCHHHHHHHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccccceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 5677999999999999997 89999999999999999999999999999998753
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.6e-32 Score=359.81 Aligned_cols=113 Identities=14% Similarity=0.204 Sum_probs=76.1
Q ss_pred CCccEEEEecCCCccccccccccccccceeeeeccccccccccccccCCcchhhhhheeeccCccceeEeccCCCcceec
Q 000679 1124 PSLERVFVRNCRNMKTFSEGVVCAPKLKKVQVTKKEQEEDEWCSCWEGNLNSTIQKLFVVGFHDIKDLKLSQFPHLKEIW 1203 (1355)
Q Consensus 1124 ~sL~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 1203 (1355)
++|+.|++++|.....+|..+..+++|+.|++++|... +.++..+ ..+++|+.|++++|.-...+
T Consensus 475 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~---------~~~p~~~-----~~l~~L~~L~Ls~N~l~~~~- 539 (968)
T PLN00113 475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS---------GEIPDEL-----SSCKKLVSLDLSHNQLSGQI- 539 (968)
T ss_pred ccceEEECcCCccCCccChhhhhhhccCEEECcCCcce---------eeCChHH-----cCccCCCEEECCCCcccccC-
Confidence 56777777776555566766667778888888776321 2222222 25678888888887744444
Q ss_pred ccCCCCccccCCCcEEEEecCCCCCCCcchhHHhhcCCCCEEEEeccCCceee
Q 000679 1204 HGQALNVSIFSNLRSLGVDNCTNMSSAIPANLLRCLNNLERLKVRNCDSLEEV 1256 (1355)
Q Consensus 1204 ~~~p~~~~~l~~L~~L~l~~C~~l~~l~p~~~l~~l~sL~~L~i~~C~~l~~l 1256 (1355)
|..+..+++|+.|++++|+ +...+|. .+.++++|+.|++++|+....+
T Consensus 540 ---p~~~~~l~~L~~L~Ls~N~-l~~~~p~-~l~~l~~L~~l~ls~N~l~~~~ 587 (968)
T PLN00113 540 ---PASFSEMPVLSQLDLSQNQ-LSGEIPK-NLGNVESLVQVNISHNHLHGSL 587 (968)
T ss_pred ---ChhHhCcccCCEEECCCCc-ccccCCh-hHhcCcccCEEeccCCcceeeC
Confidence 5667788888888888744 5544454 4577888888888888855554
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.98 E-value=1.6e-31 Score=354.77 Aligned_cols=512 Identities=17% Similarity=0.193 Sum_probs=267.4
Q ss_pred eEEEeCCCCCCCCCC-C-ccCCCceEEEEeeccCCCCcccChhhhcCCCcceEEEecCCCccc-cCcccccccCCcEEEe
Q 000679 514 SIAISLPNRDIDELP-E-RLECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLS-LPSSLVCLISLRTLSL 590 (1355)
Q Consensus 514 ~r~lsl~~~~~~~l~-~-~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~~~~-lp~~i~~L~~Lr~L~L 590 (1355)
++.+.+.++.+.... . ...+++|++|.+.++ .....+|..+|..+++||+|+|++|.+.. +|. +.+.+|++|+|
T Consensus 71 v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n-~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~L 147 (968)
T PLN00113 71 VVSIDLSGKNISGKISSAIFRLPYIQTINLSNN-QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDL 147 (968)
T ss_pred EEEEEecCCCccccCChHHhCCCCCCEEECCCC-ccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEEC
Confidence 556666655543322 1 235666777776665 22335666666667777777777766643 343 45666777777
Q ss_pred cCCCCCC--ccccccccccceeecccCCCC-ccchhhhccccCcEEeccCcchhhccchhHHhhhccccccccCCCcccc
Q 000679 591 EGCQVGD--VAIVGQLKKLEILSFRNSDIQ-QLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQW 667 (1355)
Q Consensus 591 ~~~~i~~--p~~i~~L~~L~~L~L~~~~l~-~lP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~ 667 (1355)
++|.+.. |..++++.+|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|...
T Consensus 148 s~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~- 225 (968)
T PLN00113 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLS- 225 (968)
T ss_pred cCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccC-
Confidence 7776654 666677777777777776543 56666677777777777665544455554 667777777776666542
Q ss_pred ccccCCCccchhhhcCCCCCCeEEEEecccc-CCChhhhhcccceEEEEEecccccccccccccEEEeccccchhhhhhh
Q 000679 668 EKVEGGSNASLVELKGLSKLTTLEIHIRDAR-IMPQDLISMKLEIFRMFIGNVVDWYHKFERSRLVKLDKLEKNILLGQG 746 (1355)
Q Consensus 668 ~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~-~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~L~~l~~~~~~~~~ 746 (1355)
+..+..++++++|+.|+++.+... .+|..
T Consensus 226 -------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~------------------------------------------- 255 (968)
T PLN00113 226 -------GEIPYEIGGLTSLNHLDLVYNNLTGPIPSS------------------------------------------- 255 (968)
T ss_pred -------CcCChhHhcCCCCCEEECcCceeccccChh-------------------------------------------
Confidence 234455666666776666654332 11111
Q ss_pred HHHHhcccceEEEccccCcccccccccccccccCCcEEeeecCCceeEeccccCcccccCCcccceeccccccccchhcc
Q 000679 747 MKMFLKRTEDLYLHDLKGFQNVVHELDDGEVFSELKHLHVEHSYEILHIVSSIGQVCCKVFPLLESLSLCRLFNLEKICH 826 (1355)
Q Consensus 747 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~ 826 (1355)
++.+++|+.|.+.++.....++. ....+++|++|++.++.-...++.
T Consensus 256 ----------------------------l~~l~~L~~L~L~~n~l~~~~p~-----~l~~l~~L~~L~Ls~n~l~~~~p~ 302 (968)
T PLN00113 256 ----------------------------LGNLKNLQYLFLYQNKLSGPIPP-----SIFSLQKLISLDLSDNSLSGEIPE 302 (968)
T ss_pred ----------------------------HhCCCCCCEEECcCCeeeccCch-----hHhhccCcCEEECcCCeeccCCCh
Confidence 22344444444444322111111 112344455555544322111111
Q ss_pred cCCCCCCCCCCccEEEEecCCCcccccchhhHHhcccccEEEEccccchhhhhccccccccccccccCcccCCCCCcccc
Q 000679 827 NRLHEDESFSNLRIIKVGECDKLRHLFSFSMAKNLLRLQKISVFDCKSLEIIVGLDMEKQRTTLGFNGITTKDDPDEKVI 906 (1355)
Q Consensus 827 ~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 906 (1355)
. ...+++|+.|++.+|.-...+|. .+..+++|+.|.+++|.-...++ ..+..
T Consensus 303 ~----~~~l~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~p----------------------~~l~~ 354 (968)
T PLN00113 303 L----VIQLQNLEILHLFSNNFTGKIPV--ALTSLPRLQVLQLWSNKFSGEIP----------------------KNLGK 354 (968)
T ss_pred h----HcCCCCCcEEECCCCccCCcCCh--hHhcCCCCCEEECcCCCCcCcCC----------------------hHHhC
Confidence 1 23455666666655543333332 34556666666665543211111 12223
Q ss_pred cCCcceeccccccccccccCCCCCCCCcCCCccEEEEecccccccccchhHHhhhcccceeEEeeccccceecccCcccc
Q 000679 907 FPSLEELDLYSLITIEKLWPKQFQGMSSCQNLTKVTVAFCDRLKYLFSYSMVNSLVQLQHLEICYCWSMEGVVETNSTES 986 (1355)
Q Consensus 907 ~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~ 986 (1355)
+++|+.|+++++. +. ...+..+..+++|+.|++++|+ +....+ ..+..+++|+.|++++|.....++.
T Consensus 355 ~~~L~~L~Ls~n~-l~---~~~p~~~~~~~~L~~L~l~~n~-l~~~~p-~~~~~~~~L~~L~L~~n~l~~~~p~------ 422 (968)
T PLN00113 355 HNNLTVLDLSTNN-LT---GEIPEGLCSSGNLFKLILFSNS-LEGEIP-KSLGACRSLRRVRLQDNSFSGELPS------ 422 (968)
T ss_pred CCCCcEEECCCCe-eE---eeCChhHhCcCCCCEEECcCCE-ecccCC-HHHhCCCCCCEEECcCCEeeeECCh------
Confidence 5566666666552 11 1112223345566666666633 333222 2234566666666666643322211
Q ss_pred ccCCcceeccccccccccccCCCCCCccccccccccccCCccEEeeccCcCcceeccccccccccccCCCcccccccCCC
Q 000679 987 RRDEGRLIEIVFPKLLYLRLIDLPKLMGFSIGIHSVEFPSLLELQIDDCPNMKRFISISSSQDNIHANPQPLFDEKVGTP 1066 (1355)
Q Consensus 987 ~~~~~~~~~~~l~~L~~L~l~~l~~l~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~l~~~~~~~f~~~~~l~ 1066 (1355)
.|..+++|+.++++++.-....+... ..+++|+.|++++|.-...+|.. .+.+
T Consensus 423 -------~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~~~~~~p~~------------------~~~~ 475 (968)
T PLN00113 423 -------EFTKLPLVYFLDISNNNLQGRINSRK--WDMPSLQMLSLARNKFFGGLPDS------------------FGSK 475 (968)
T ss_pred -------hHhcCCCCCEEECcCCcccCccChhh--ccCCCCcEEECcCceeeeecCcc------------------cccc
Confidence 22334555555555443221111110 12566667776666544333211 1125
Q ss_pred CceEEEEccccchhhhhccccccccccceeeccccccccccCCCcceEeeCCccccCCCccEEEEecCCCcccccccccc
Q 000679 1067 NLMTLRVSYCHNIEEIIRHVGEDVKENRITFNQLKNLELDDLPSLTSFCLGNCTLEFPSLERVFVRNCRNMKTFSEGVVC 1146 (1355)
Q Consensus 1067 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~l~sL~~L~i~~c~~l~~lp~~~~~ 1146 (1355)
+|+.|++++|. +....+. ....+++|+.|++++|.-...+|..+..
T Consensus 476 ~L~~L~ls~n~-l~~~~~~---------------------------------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 521 (968)
T PLN00113 476 RLENLDLSRNQ-FSGAVPR---------------------------------KLGSLSELMQLKLSENKLSGEIPDELSS 521 (968)
T ss_pred cceEEECcCCc-cCCccCh---------------------------------hhhhhhccCEEECcCCcceeeCChHHcC
Confidence 66666666653 2221111 0123556777777776555567777777
Q ss_pred ccccceeeeeccccccccccccccCCcchhhhhheeeccCccceeEeccCCCcceecccCCCCccccCCCcEEEEecCCC
Q 000679 1147 APKLKKVQVTKKEQEEDEWCSCWEGNLNSTIQKLFVVGFHDIKDLKLSQFPHLKEIWHGQALNVSIFSNLRSLGVDNCTN 1226 (1355)
Q Consensus 1147 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~p~~~~~l~~L~~L~l~~C~~ 1226 (1355)
+++|++|++++|.. .+.++..+ ..+++|+.|++++|.....+ |..+..+++|+.|++++|+
T Consensus 522 l~~L~~L~Ls~N~l---------~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~l~ls~N~- 582 (968)
T PLN00113 522 CKKLVSLDLSHNQL---------SGQIPASF-----SEMPVLSQLDLSQNQLSGEI----PKNLGNVESLVQVNISHNH- 582 (968)
T ss_pred ccCCCEEECCCCcc---------cccCChhH-----hCcccCCEEECCCCcccccC----ChhHhcCcccCEEeccCCc-
Confidence 77888888876632 12222222 25678888888887755555 6677778888888888855
Q ss_pred CCCCcch
Q 000679 1227 MSSAIPA 1233 (1355)
Q Consensus 1227 l~~l~p~ 1233 (1355)
+...+|.
T Consensus 583 l~~~~p~ 589 (968)
T PLN00113 583 LHGSLPS 589 (968)
T ss_pred ceeeCCC
Confidence 4433354
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=1.1e-20 Score=249.82 Aligned_cols=370 Identities=21% Similarity=0.260 Sum_probs=223.9
Q ss_pred CCceEEEEeeccCCCCcccChhhhcCCCcceEEEecCCCc-------cccCccccccc-CCcEEEecCCCCCC-cccccc
Q 000679 533 CPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCF-------LSLPSSLVCLI-SLRTLSLEGCQVGD-VAIVGQ 603 (1355)
Q Consensus 533 ~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~~-------~~lp~~i~~L~-~Lr~L~L~~~~i~~-p~~i~~ 603 (1355)
..+++.+.+.........+....|.+|++|++|.+..+.. ..+|..+..++ +||+|++.++++.. |..+ .
T Consensus 531 ~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~ 609 (1153)
T PLN03210 531 TKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-R 609 (1153)
T ss_pred cceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-C
Confidence 3455555544331223456777899999999999976532 23777777775 69999999999988 7666 6
Q ss_pred ccccceeecccCCCCccchhhhccccCcEEeccCcchhhccchhHHhhhccccccccCCCccccccccCCCccchhhhcC
Q 000679 604 LKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKG 683 (1355)
Q Consensus 604 L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 683 (1355)
+.+|++|+++++.+..+|.++..+++|+.|++++|..++.+|. ++.+++|++|++.+|... ...+..++.
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L--------~~lp~si~~ 679 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSL--------VELPSSIQY 679 (1153)
T ss_pred ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCc--------cccchhhhc
Confidence 7999999999999999999999999999999999888888885 888999999999877542 122334555
Q ss_pred CCCCCeEEEEeccccCCChhhhhcccceEEEEEecccccccccccccEEEeccccchhhhhhhHHHHhcccceEEEcccc
Q 000679 684 LSKLTTLEIHIRDARIMPQDLISMKLEIFRMFIGNVVDWYHKFERSRLVKLDKLEKNILLGQGMKMFLKRTEDLYLHDLK 763 (1355)
Q Consensus 684 L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~L~~l~~~~~~~~~~~~~l~~L~~L~l~~~~ 763 (1355)
+++|+.|+++++..
T Consensus 680 L~~L~~L~L~~c~~------------------------------------------------------------------ 693 (1153)
T PLN03210 680 LNKLEDLDMSRCEN------------------------------------------------------------------ 693 (1153)
T ss_pred cCCCCEEeCCCCCC------------------------------------------------------------------
Confidence 55555555542210
Q ss_pred CcccccccccccccccCCcEEeeecCCceeEeccccCcccccCCcccceeccccccccchhcccCCCCCCCCCCccEEEE
Q 000679 764 GFQNVVHELDDGEVFSELKHLHVEHSYEILHIVSSIGQVCCKVFPLLESLSLCRLFNLEKICHNRLHEDESFSNLRIIKV 843 (1355)
Q Consensus 764 ~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l 843 (1355)
.. .++....+++|+.|.+.+|..+..++. ..++|+.|++
T Consensus 694 -L~----~Lp~~i~l~sL~~L~Lsgc~~L~~~p~------------------------------------~~~nL~~L~L 732 (1153)
T PLN03210 694 -LE----ILPTGINLKSLYRLNLSGCSRLKSFPD------------------------------------ISTNISWLDL 732 (1153)
T ss_pred -cC----ccCCcCCCCCCCEEeCCCCCCcccccc------------------------------------ccCCcCeeec
Confidence 00 011011344555555555544332211 1234444554
Q ss_pred ecCCCcccccchhhHHhcccccEEEEccccchhhhhccccccccccccccCcccCCCCCcccccCCcceecccccccccc
Q 000679 844 GECDKLRHLFSFSMAKNLLRLQKISVFDCKSLEIIVGLDMEKQRTTLGFNGITTKDDPDEKVIFPSLEELDLYSLITIEK 923 (1355)
Q Consensus 844 ~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 923 (1355)
.++. +..+|.. ..+++|++|.+.+|.... +... ..... ......+++|+.|++++|+.+..
T Consensus 733 ~~n~-i~~lP~~---~~l~~L~~L~l~~~~~~~-l~~~----------~~~l~----~~~~~~~~sL~~L~Ls~n~~l~~ 793 (1153)
T PLN03210 733 DETA-IEEFPSN---LRLENLDELILCEMKSEK-LWER----------VQPLT----PLMTMLSPSLTRLFLSDIPSLVE 793 (1153)
T ss_pred CCCc-ccccccc---ccccccccccccccchhh-cccc----------ccccc----hhhhhccccchheeCCCCCCccc
Confidence 4432 3333321 134455555554432111 0000 00000 00011256777888877765554
Q ss_pred ccCCCCCCCCcCCCccEEEEecccccccccchhHHhhhcccceeEEeeccccceecccCccccccCCcceeccccccccc
Q 000679 924 LWPKQFQGMSSCQNLTKVTVAFCDRLKYLFSYSMVNSLVQLQHLEICYCWSMEGVVETNSTESRRDEGRLIEIVFPKLLY 1003 (1355)
Q Consensus 924 ~~~~~~~~l~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~l~~L~~ 1003 (1355)
+ +..++.+++|+.|+|++|++++.+|... .+++|+.|++++|..+..++. ..++|+.
T Consensus 794 l----P~si~~L~~L~~L~Ls~C~~L~~LP~~~---~L~sL~~L~Ls~c~~L~~~p~----------------~~~nL~~ 850 (1153)
T PLN03210 794 L----PSSIQNLHKLEHLEIENCINLETLPTGI---NLESLESLDLSGCSRLRTFPD----------------ISTNISD 850 (1153)
T ss_pred c----ChhhhCCCCCCEEECCCCCCcCeeCCCC---CccccCEEECCCCCccccccc----------------cccccCE
Confidence 3 3334567788888888888877776422 567788888888877655432 1345666
Q ss_pred cccCCCCCCccccccccccccCCccEEeeccCcCcceeccccccccccccCCCcccccccCCCCceEEEEccccchhhh
Q 000679 1004 LRLIDLPKLMGFSIGIHSVEFPSLLELQIDDCPNMKRFISISSSQDNIHANPQPLFDEKVGTPNLMTLRVSYCHNIEEI 1082 (1355)
Q Consensus 1004 L~l~~l~~l~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~l~~~~~~~f~~~~~l~~L~~L~l~~c~~l~~~ 1082 (1355)
|++++. .+..++... ..+++|+.|++.+|++++.++.. ...+++|+.|++++|.+++.+
T Consensus 851 L~Ls~n-~i~~iP~si--~~l~~L~~L~L~~C~~L~~l~~~-----------------~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 851 LNLSRT-GIEEVPWWI--EKFSNLSFLDMNGCNNLQRVSLN-----------------ISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred eECCCC-CCccChHHH--hcCCCCCEEECCCCCCcCccCcc-----------------cccccCCCeeecCCCcccccc
Confidence 666553 233333221 23777888888888877776421 123477777788888776654
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.83 E-value=5.9e-22 Score=229.80 Aligned_cols=124 Identities=27% Similarity=0.372 Sum_probs=106.5
Q ss_pred eEEEEeeccCCCCcccChhhhcCCCcceEEEecCCCccccCcccccccCCcEEEecCCCCCC-ccccccccccceeeccc
Q 000679 536 LSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGD-VAIVGQLKKLEILSFRN 614 (1355)
Q Consensus 536 Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~-p~~i~~L~~L~~L~L~~ 614 (1355)
+..|.+..| .....|-.+..+.-+|++||+++|.+...|..|..+.+|+.|+++.|.+.. |.+++++.+|++|+|.+
T Consensus 23 ~~~ln~~~N--~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~ 100 (1081)
T KOG0618|consen 23 LQILNLRRN--SLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN 100 (1081)
T ss_pred HHhhhcccc--ccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheecc
Confidence 444444444 344445555566666999999999999999999999999999999999998 99999999999999999
Q ss_pred CCCCccchhhhccccCcEEeccCcchhhccchhHHhhhccccccccCCC
Q 000679 615 SDIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDS 663 (1355)
Q Consensus 615 ~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~ 663 (1355)
|.+..+|.++..+++|++|+++. +....+|.- +..++.+..+..++|
T Consensus 101 n~l~~lP~~~~~lknl~~LdlS~-N~f~~~Pl~-i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 101 NRLQSLPASISELKNLQYLDLSF-NHFGPIPLV-IEVLTAEEELAASNN 147 (1081)
T ss_pred chhhcCchhHHhhhcccccccch-hccCCCchh-HHhhhHHHHHhhhcc
Confidence 99999999999999999999999 557888876 889999999998877
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=2.5e-23 Score=218.07 Aligned_cols=107 Identities=14% Similarity=0.235 Sum_probs=76.0
Q ss_pred cCCCccEEEEecCCCccccccccccccccceeeeeccccccccccccccCCcchhhhhheeeccCccceeEeccCCCcce
Q 000679 1122 EFPSLERVFVRNCRNMKTFSEGVVCAPKLKKVQVTKKEQEEDEWCSCWEGNLNSTIQKLFVVGFHDIKDLKLSQFPHLKE 1201 (1355)
Q Consensus 1122 ~l~sL~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 1201 (1355)
.++.|..|++++ +-+..+|..++.+..|+.|+++.|+.-.. +..+. .+..|+.+-.++ .++..
T Consensus 433 ~l~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~NrFr~l----------P~~~y-----~lq~lEtllas~-nqi~~ 495 (565)
T KOG0472|consen 433 QLQKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSFNRFRML----------PECLY-----ELQTLETLLASN-NQIGS 495 (565)
T ss_pred hhhcceeeeccc-chhhhcchhhhhhhhhheecccccccccc----------hHHHh-----hHHHHHHHHhcc-ccccc
Confidence 577788888876 66788999988888899999987632211 11111 233445444444 44777
Q ss_pred ecccCCCCccccCCCcEEEEecCCCCCCCcchhHHhhcCCCCEEEEeccC
Q 000679 1202 IWHGQALNVSIFSNLRSLGVDNCTNMSSAIPANLLRCLNNLERLKVRNCD 1251 (1355)
Q Consensus 1202 l~~~~p~~~~~l~~L~~L~l~~C~~l~~l~p~~~l~~l~sL~~L~i~~C~ 1251 (1355)
+. |.++..+.+|..|++.+ +.++.+ |+ +++++++|++|+++++|
T Consensus 496 vd---~~~l~nm~nL~tLDL~n-Ndlq~I-Pp-~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 496 VD---PSGLKNMRNLTTLDLQN-NDLQQI-PP-ILGNMTNLRHLELDGNP 539 (565)
T ss_pred cC---hHHhhhhhhcceeccCC-CchhhC-Ch-hhccccceeEEEecCCc
Confidence 73 44688889999999987 788886 54 56999999999999987
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.81 E-value=6.3e-23 Score=215.15 Aligned_cols=179 Identities=25% Similarity=0.371 Sum_probs=137.2
Q ss_pred ccccceEEEeCCCCCCCCCCC-ccCCCceEEEEeeccCCCCcccChhhhcCCCcceEEEecCCCccccCcccccccCCcE
Q 000679 509 KTQKDSIAISLPNRDIDELPE-RLECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRT 587 (1355)
Q Consensus 509 ~~~~~~r~lsl~~~~~~~l~~-~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~ 587 (1355)
|.+.+...+-+.++++..+.+ ...+..+.+|.++++ ...++|..+ .++..+..|+.++|.+..+|..++.+..|+.
T Consensus 42 W~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n--~l~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~ 118 (565)
T KOG0472|consen 42 WEQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDN--KLSQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVK 118 (565)
T ss_pred hhhcchhhhhhccCchhhccHhhhcccceeEEEeccc--hhhhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhh
Confidence 333333444455555554432 345667777777776 666778776 7788888888899988889988888899999
Q ss_pred EEecCCCCCC-ccccccccccceeecccCCCCccchhhhccccCcEEeccCcchhhccchhHHhhhccccccccCCCccc
Q 000679 588 LSLEGCQVGD-VAIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQ 666 (1355)
Q Consensus 588 L~L~~~~i~~-p~~i~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 666 (1355)
|+.+++.+.. |++|+.+..|+.|+..+|++..+|.+++++.+|..|++.+ +.++.+|++.+. ++.|++|+...|..
T Consensus 119 l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~~i~-m~~L~~ld~~~N~L- 195 (565)
T KOG0472|consen 119 LDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEG-NKLKALPENHIA-MKRLKHLDCNSNLL- 195 (565)
T ss_pred hhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccc-cchhhCCHHHHH-HHHHHhcccchhhh-
Confidence 9999888888 8889999999999988888999999998888888888888 568888888444 88999988765544
Q ss_pred cccccCCCccchhhhcCCCCCCeEEEEeccccCCC
Q 000679 667 WEKVEGGSNASLVELKGLSKLTTLEIHIRDARIMP 701 (1355)
Q Consensus 667 ~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~ 701 (1355)
+..+.+++.|.+|..|++..++....|
T Consensus 196 --------~tlP~~lg~l~~L~~LyL~~Nki~~lP 222 (565)
T KOG0472|consen 196 --------ETLPPELGGLESLELLYLRRNKIRFLP 222 (565)
T ss_pred --------hcCChhhcchhhhHHHHhhhcccccCC
Confidence 346778888888888888877766655
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.77 E-value=1.4e-20 Score=207.36 Aligned_cols=337 Identities=20% Similarity=0.310 Sum_probs=184.7
Q ss_pred EEeCCCCCCCCCCCcc-CCCceEEEEeeccCCCCcccChhhhcCCCcceEEEecCCCccc--cCcccccccCCcEEEecC
Q 000679 516 AISLPNRDIDELPERL-ECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLS--LPSSLVCLISLRTLSLEG 592 (1355)
Q Consensus 516 ~lsl~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~~~~--lp~~i~~L~~Lr~L~L~~ 592 (1355)
-+.+....+..+|+.. .+.+|..|.+..| ....+... ++.++.||.+++.+|++.. +|..|.+|..|.+|+|++
T Consensus 36 WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN--~L~~vhGE-Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLSh 112 (1255)
T KOG0444|consen 36 WLKLNRTKLEQVPEELSRLQKLEHLSMAHN--QLISVHGE-LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSH 112 (1255)
T ss_pred EEEechhhhhhChHHHHHHhhhhhhhhhhh--hhHhhhhh-hccchhhHHHhhhccccccCCCCchhcccccceeeecch
Confidence 3334444444444422 4455555555444 22233322 2556666666666666543 666666666666666666
Q ss_pred CCCCC-ccccccccccceeecccCCCCccchhh-hccccCcEEeccCcchhhccchhHHhhhccccccccCCCccccccc
Q 000679 593 CQVGD-VAIVGQLKKLEILSFRNSDIQQLPREI-GQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKV 670 (1355)
Q Consensus 593 ~~i~~-p~~i~~L~~L~~L~L~~~~l~~lP~~i-~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 670 (1355)
|++.+ |..+.+-+++-+|+||+|+|..+|.++ .+|+.|-.|||++ +.+..+|+. +.+|.+|++|.+++|...
T Consensus 113 NqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~---- 186 (1255)
T KOG0444|consen 113 NQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQ-IRRLSMLQTLKLSNNPLN---- 186 (1255)
T ss_pred hhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHH-HHHHhhhhhhhcCCChhh----
Confidence 66666 666666666666666666666666553 4666666666666 456666666 666666666666665441
Q ss_pred cCCCccchhhhcCCCCCCeEEEEecccc--CCChhhhhcccceEEEEEecccccccccccccEEEeccccchhhhhhhHH
Q 000679 671 EGGSNASLVELKGLSKLTTLEIHIRDAR--IMPQDLISMKLEIFRMFIGNVVDWYHKFERSRLVKLDKLEKNILLGQGMK 748 (1355)
Q Consensus 671 ~~~~~~~~~~L~~L~~L~~L~l~~~~~~--~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~L~~l~~~~~~~~~~~ 748 (1355)
...+..|..|+.|+.|++++.... .+|.
T Consensus 187 ----hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt---------------------------------------------- 216 (1255)
T KOG0444|consen 187 ----HFQLRQLPSMTSLSVLHMSNTQRTLDNIPT---------------------------------------------- 216 (1255)
T ss_pred ----HHHHhcCccchhhhhhhcccccchhhcCCC----------------------------------------------
Confidence 223334444444555554433211 1111
Q ss_pred HHhcccceEEEccccCcccccccccccccccCCcEEeeecCCceeEeccccCcccccCCcccceeccccccccchhcccC
Q 000679 749 MFLKRTEDLYLHDLKGFQNVVHELDDGEVFSELKHLHVEHSYEILHIVSSIGQVCCKVFPLLESLSLCRLFNLEKICHNR 828 (1355)
Q Consensus 749 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~ 828 (1355)
++..+.||..++++.. .+..+|.+ .-.+++|+.|.|++ ++++++...
T Consensus 217 -------------------------sld~l~NL~dvDlS~N-~Lp~vPec-----ly~l~~LrrLNLS~-N~iteL~~~- 263 (1255)
T KOG0444|consen 217 -------------------------SLDDLHNLRDVDLSEN-NLPIVPEC-----LYKLRNLRRLNLSG-NKITELNMT- 263 (1255)
T ss_pred -------------------------chhhhhhhhhcccccc-CCCcchHH-----HhhhhhhheeccCc-Cceeeeecc-
Confidence 1334555555555432 22223221 12245566666655 333333211
Q ss_pred CCCCCCCCCccEEEEecCCCcccccchhhHHhcccccEEEEccccchhhhhccccccccccccccCcccCCCCCcccccC
Q 000679 829 LHEDESFSNLRIIKVGECDKLRHLFSFSMAKNLLRLQKISVFDCKSLEIIVGLDMEKQRTTLGFNGITTKDDPDEKVIFP 908 (1355)
Q Consensus 829 ~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 908 (1355)
.+...+|++|+++. ..|+.+|. .+..++.|+.|.+.+.. +.|.|+ +...+.+.
T Consensus 264 ---~~~W~~lEtLNlSr-NQLt~LP~--avcKL~kL~kLy~n~Nk----------------L~FeGi-----PSGIGKL~ 316 (1255)
T KOG0444|consen 264 ---EGEWENLETLNLSR-NQLTVLPD--AVCKLTKLTKLYANNNK----------------LTFEGI-----PSGIGKLI 316 (1255)
T ss_pred ---HHHHhhhhhhcccc-chhccchH--HHhhhHHHHHHHhccCc----------------ccccCC-----ccchhhhh
Confidence 34456677777776 35666665 36677777777665531 123332 23334566
Q ss_pred CcceeccccccccccccCCCCCCCCcCCCccEEEEecccccccccchhHHhhhcccceeEEeeccccceec
Q 000679 909 SLEELDLYSLITIEKLWPKQFQGMSSCQNLTKVTVAFCDRLKYLFSYSMVNSLVQLQHLEICYCWSMEGVV 979 (1355)
Q Consensus 909 ~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~ 979 (1355)
+|+.+...++ +++-+ +.++..|+.|+.|.++. ++|..+|. .+.-++.|+.|++..++++.-.|
T Consensus 317 ~Levf~aanN-~LElV----PEglcRC~kL~kL~L~~-NrLiTLPe--aIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 317 QLEVFHAANN-KLELV----PEGLCRCVKLQKLKLDH-NRLITLPE--AIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhHHHHhhcc-ccccC----chhhhhhHHHHHhcccc-cceeechh--hhhhcCCcceeeccCCcCccCCC
Confidence 7777776665 44433 34456778888888765 77776654 45667788888888887775444
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.76 E-value=4.3e-19 Score=195.01 Aligned_cols=348 Identities=17% Similarity=0.176 Sum_probs=230.9
Q ss_pred CceEEEEeeccCCCCcccChhhhcCCCcceEEEecCCCccccCcccccccCCcEEEecCCCCCC--ccccccccccceee
Q 000679 534 PKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGD--VAIVGQLKKLEILS 611 (1355)
Q Consensus 534 ~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~--p~~i~~L~~L~~L~ 611 (1355)
+..++|.+..| ....+...+|.++.+|+.+.+..|.+..+|.......||..|+|.+|.|.. -+.+..+..||+||
T Consensus 78 ~~t~~LdlsnN--kl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 78 SQTQTLDLSNN--KLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred cceeeeecccc--ccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 45677888776 556666677888899999999998888888877777789999999988887 57788888899999
Q ss_pred cccCCCCccchh-hhccccCcEEeccCcchhhccchhHHhhhccccccccCCCccccccccCCCccchhhhcCCCCCCeE
Q 000679 612 FRNSDIQQLPRE-IGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTL 690 (1355)
Q Consensus 612 L~~~~l~~lP~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L 690 (1355)
||.|.|.++|.. +..=.++++|+|++ +.++.+..+.+..|.+|-+|.++.|.+. .-.+..+++|++|+.|
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~~lnsL~tlkLsrNrit--------tLp~r~Fk~L~~L~~L 226 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFDSLNSLLTLKLSRNRIT--------TLPQRSFKRLPKLESL 226 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeecc-ccccccccccccccchheeeecccCccc--------ccCHHHhhhcchhhhh
Confidence 999888888743 44557888898888 5677777777888888888888888763 3445677888888888
Q ss_pred EEEeccccCCChhhhhcccceEEEEEecccccccccccccEEEeccccchhhhhhhHHHHhcccceEEEccccCcccccc
Q 000679 691 EIHIRDARIMPQDLISMKLEIFRMFIGNVVDWYHKFERSRLVKLDKLEKNILLGQGMKMFLKRTEDLYLHDLKGFQNVVH 770 (1355)
Q Consensus 691 ~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~L~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 770 (1355)
++..|.+.......+ .. +++|+.|.+......+-.-.
T Consensus 227 dLnrN~irive~ltF-qg------------------------------------------L~Sl~nlklqrN~I~kL~DG 263 (873)
T KOG4194|consen 227 DLNRNRIRIVEGLTF-QG------------------------------------------LPSLQNLKLQRNDISKLDDG 263 (873)
T ss_pred hccccceeeehhhhh-cC------------------------------------------chhhhhhhhhhcCcccccCc
Confidence 887665443211100 00 12222222222111110000
Q ss_pred cccccccccCCcEEeeecCCceeEeccccCcccccCCcccceeccccccccchhcccCCCCCCCCCCccEEEEecCCCcc
Q 000679 771 ELDDGEVFSELKHLHVEHSYEILHIVSSIGQVCCKVFPLLESLSLCRLFNLEKICHNRLHEDESFSNLRIIKVGECDKLR 850 (1355)
Q Consensus 771 ~l~~l~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 850 (1355)
.+..+.++++|++.... +..+..+ ..-++.+|+.|++++ +.+..+.... =...++|+.|+++++ .++
T Consensus 264 ---~Fy~l~kme~l~L~~N~-l~~vn~g----~lfgLt~L~~L~lS~-NaI~rih~d~---WsftqkL~~LdLs~N-~i~ 330 (873)
T KOG4194|consen 264 ---AFYGLEKMEHLNLETNR-LQAVNEG----WLFGLTSLEQLDLSY-NAIQRIHIDS---WSFTQKLKELDLSSN-RIT 330 (873)
T ss_pred ---ceeeecccceeecccch-hhhhhcc----cccccchhhhhccch-hhhheeecch---hhhcccceeEecccc-ccc
Confidence 13356666777665332 2222111 223456777777775 3333332211 123678999999884 567
Q ss_pred cccchhhHHhcccccEEEEccccchhhhhccccccccccccccCcccCCCCCcccccCCcceeccccccccccccCCCCC
Q 000679 851 HLFSFSMAKNLLRLQKISVFDCKSLEIIVGLDMEKQRTTLGFNGITTKDDPDEKVIFPSLEELDLYSLITIEKLWPKQFQ 930 (1355)
Q Consensus 851 ~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 930 (1355)
.+++ ..+..+..|++|.+++. .+..+.. +.+..+++|++|+|+++ .+.-.-.+.-.
T Consensus 331 ~l~~-~sf~~L~~Le~LnLs~N-si~~l~e---------------------~af~~lssL~~LdLr~N-~ls~~IEDaa~ 386 (873)
T KOG4194|consen 331 RLDE-GSFRVLSQLEELNLSHN-SIDHLAE---------------------GAFVGLSSLHKLDLRSN-ELSWCIEDAAV 386 (873)
T ss_pred cCCh-hHHHHHHHhhhhccccc-chHHHHh---------------------hHHHHhhhhhhhcCcCC-eEEEEEecchh
Confidence 7765 46788899999999884 4554431 23445889999999988 33221222223
Q ss_pred CCCcCCCccEEEEecccccccccchhHHhhhcccceeEEeeccc
Q 000679 931 GMSSCQNLTKVTVAFCDRLKYLFSYSMVNSLVQLQHLEICYCWS 974 (1355)
Q Consensus 931 ~l~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~ 974 (1355)
.+..+++|++|.+.+ ++++.++...+ ..+++||+|++.++..
T Consensus 387 ~f~gl~~LrkL~l~g-Nqlk~I~krAf-sgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 387 AFNGLPSLRKLRLTG-NQLKSIPKRAF-SGLEALEHLDLGDNAI 428 (873)
T ss_pred hhccchhhhheeecC-ceeeecchhhh-ccCcccceecCCCCcc
Confidence 345699999999999 89999876544 6899999999988753
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.75 E-value=3.4e-20 Score=204.32 Aligned_cols=181 Identities=18% Similarity=0.271 Sum_probs=148.2
Q ss_pred eEEEeCCCCCCCCCC-CccCCCceEEEEeeccCCCCcccChhhhcCCCcceEEEecCCCccccCcccccccCCcEEEecC
Q 000679 514 SIAISLPNRDIDELP-ERLECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEG 592 (1355)
Q Consensus 514 ~r~lsl~~~~~~~l~-~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~ 592 (1355)
..|+++.++.+..+. +..+++.||++.+..|.-...-+|+++| +++-|.+||||+|.+.+.|..+..-+++-+|+|++
T Consensus 57 LEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~ 135 (1255)
T KOG0444|consen 57 LEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSY 135 (1255)
T ss_pred hhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEEEccc
Confidence 678888888775543 3457899999999988556678999985 69999999999999999999999999999999999
Q ss_pred CCCCC-ccc-cccccccceeecccCCCCccchhhhccccCcEEeccCcchhhccchhHHhhhccccccccCCCccccccc
Q 000679 593 CQVGD-VAI-VGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKV 670 (1355)
Q Consensus 593 ~~i~~-p~~-i~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 670 (1355)
|+|.. |.+ +-+|+.|-+||||+|.+..||..+.+|.+|++|+|+++. +..+.-.-+-.|++|++|.+++....
T Consensus 136 N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRT---- 210 (1255)
T KOG0444|consen 136 NNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRT---- 210 (1255)
T ss_pred CccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccch----
Confidence 99998 765 458999999999999999999999999999999999964 33332112445788899998876543
Q ss_pred cCCCccchhhhcCCCCCCeEEEEeccccCCChh
Q 000679 671 EGGSNASLVELKGLSKLTTLEIHIRDARIMPQD 703 (1355)
Q Consensus 671 ~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~ 703 (1355)
-...+..+..|.||+.++++.++....|.-
T Consensus 211 ---l~N~Ptsld~l~NL~dvDlS~N~Lp~vPec 240 (1255)
T KOG0444|consen 211 ---LDNIPTSLDDLHNLRDVDLSENNLPIVPEC 240 (1255)
T ss_pred ---hhcCCCchhhhhhhhhccccccCCCcchHH
Confidence 234567788899999999998877666654
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.74 E-value=1.2e-18 Score=191.46 Aligned_cols=131 Identities=17% Similarity=0.224 Sum_probs=67.8
Q ss_pred ceEEEecCCCcccc-CcccccccCCcEEEecCCCCCC-ccccccccccceeecccCCCCccc-hhhhccccCcEEeccCc
Q 000679 562 LRVVHFTRTCFLSL-PSSLVCLISLRTLSLEGCQVGD-VAIVGQLKKLEILSFRNSDIQQLP-REIGQLVQLRLLDLRNC 638 (1355)
Q Consensus 562 Lr~L~L~~~~~~~l-p~~i~~L~~Lr~L~L~~~~i~~-p~~i~~L~~L~~L~L~~~~l~~lP-~~i~~L~~L~~L~l~~~ 638 (1355)
-+.||+++|.+..+ +..|.++++|+.+++..|.+.. |...+...||+.|+|.+|.|.++- +++.-+..|+.|||+.
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr- 158 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR- 158 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh-
Confidence 44566666655543 3345555666666666665555 444444555666666665555543 2345555556666655
Q ss_pred chhhccchhHHhhhccccccccCCCccccccccCCCccchhhhcCCCCCCeEEEEeccccCCC
Q 000679 639 RRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTLEIHIRDARIMP 701 (1355)
Q Consensus 639 ~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~ 701 (1355)
+.+..+|...+.+-.++++|++.+|.+. ......+..+.+|..|.++.|....+|
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It--------~l~~~~F~~lnsL~tlkLsrNrittLp 213 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRIT--------TLETGHFDSLNSLLTLKLSRNRITTLP 213 (873)
T ss_pred chhhcccCCCCCCCCCceEEeecccccc--------ccccccccccchheeeecccCcccccC
Confidence 3455555444444455555555555441 222334444555555555555444444
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.74 E-value=1.2e-19 Score=210.96 Aligned_cols=132 Identities=20% Similarity=0.296 Sum_probs=78.9
Q ss_pred cCCCccEEEEecCCCcc-ccccccccccccceeeeeccccccccccccccCCcchhhhhheeeccCccceeEeccCCCcc
Q 000679 1122 EFPSLERVFVRNCRNMK-TFSEGVVCAPKLKKVQVTKKEQEEDEWCSCWEGNLNSTIQKLFVVGFHDIKDLKLSQFPHLK 1200 (1355)
Q Consensus 1122 ~l~sL~~L~i~~c~~l~-~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 1200 (1355)
.++.|+.|++.+ +.++ ..-..+.+..+|+.|++++|...+ +....+.++..|+.|+++++. |+
T Consensus 357 ~~~~Lq~Lylan-N~Ltd~c~p~l~~~~hLKVLhLsyNrL~~--------------fpas~~~kle~LeeL~LSGNk-L~ 420 (1081)
T KOG0618|consen 357 NHAALQELYLAN-NHLTDSCFPVLVNFKHLKVLHLSYNRLNS--------------FPASKLRKLEELEELNLSGNK-LT 420 (1081)
T ss_pred hhHHHHHHHHhc-Ccccccchhhhccccceeeeeeccccccc--------------CCHHHHhchHHhHHHhcccch-hh
Confidence 456777777776 3343 222234456788888887653221 112223466778888888865 77
Q ss_pred eecccCCCCccccCCCcEEEEecCCCCCCCcchhHHhhcCCCCEEEEeccCCceeeeeccccCCcCcCCCCCCcccEEec
Q 000679 1201 EIWHGQALNVSIFSNLRSLGVDNCTNMSSAIPANLLRCLNNLERLKVRNCDSLEEVFHLEDVNADEHFGPLFPKLYELEL 1280 (1355)
Q Consensus 1201 ~l~~~~p~~~~~l~~L~~L~l~~C~~l~~l~p~~~l~~l~sL~~L~i~~C~~l~~l~~~~~~~~~~~~~~~lpsL~~L~i 1280 (1355)
.+ |..+..+..|++|...+ ++|.+. | + +..+++|+.+|++. ..|..+. .++. .. -|.|++|++
T Consensus 421 ~L----p~tva~~~~L~tL~ahs-N~l~~f-P-e-~~~l~qL~~lDlS~-N~L~~~~----l~~~---~p-~p~LkyLdl 483 (1081)
T KOG0618|consen 421 TL----PDTVANLGRLHTLRAHS-NQLLSF-P-E-LAQLPQLKVLDLSC-NNLSEVT----LPEA---LP-SPNLKYLDL 483 (1081)
T ss_pred hh----hHHHHhhhhhHHHhhcC-Cceeec-h-h-hhhcCcceEEeccc-chhhhhh----hhhh---CC-Ccccceeec
Confidence 77 56677777888887766 667664 5 3 35578888888754 3354431 1111 00 157777777
Q ss_pred CCCCCc
Q 000679 1281 IDLPKL 1286 (1355)
Q Consensus 1281 ~~c~~L 1286 (1355)
+|.+.+
T Consensus 484 SGN~~l 489 (1081)
T KOG0618|consen 484 SGNTRL 489 (1081)
T ss_pred cCCccc
Confidence 777653
No 15
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.52 E-value=2.1e-14 Score=179.17 Aligned_cols=114 Identities=25% Similarity=0.402 Sum_probs=69.0
Q ss_pred CCCccCCCceEEEEeeccCCCCcccChhhhcCCCcceEEEecCCC--ccccCcc-cccccCCcEEEecCCC-CCC-cccc
Q 000679 527 LPERLECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTC--FLSLPSS-LVCLISLRTLSLEGCQ-VGD-VAIV 601 (1355)
Q Consensus 527 l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~--~~~lp~~-i~~L~~Lr~L~L~~~~-i~~-p~~i 601 (1355)
.|........|...+..+ ....++.. ...+.|++|-+.++. +..++.. |..+++||+|||++|. +.. |++|
T Consensus 516 ~~~~~~~~~~rr~s~~~~--~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I 591 (889)
T KOG4658|consen 516 IPQVKSWNSVRRMSLMNN--KIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI 591 (889)
T ss_pred cccccchhheeEEEEecc--chhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH
Confidence 444445556666666655 33333333 233357777776664 4444433 5567777777777665 444 6777
Q ss_pred ccccccceeecccCCCCccchhhhccccCcEEeccCcchhhcc
Q 000679 602 GQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAI 644 (1355)
Q Consensus 602 ~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~ 644 (1355)
++|.|||||+++++.+..||.++++|++|++|++..+..+..+
T Consensus 592 ~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~ 634 (889)
T KOG4658|consen 592 GELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI 634 (889)
T ss_pred hhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccc
Confidence 7777777777777777777777777777777777665444444
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.50 E-value=4.9e-16 Score=144.34 Aligned_cols=165 Identities=22% Similarity=0.362 Sum_probs=136.5
Q ss_pred CCCCccCCCceEEEEeeccCCCCcccChhhhcCCCcceEEEecCCCccccCcccccccCCcEEEecCCCCCC-ccccccc
Q 000679 526 ELPERLECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGD-VAIVGQL 604 (1355)
Q Consensus 526 ~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~-p~~i~~L 604 (1355)
+++....++++..|.++.+ ....+|+.+ ..+++|.+|++++|.+.++|.+|+.++.||.|++.-|++.. |..||.+
T Consensus 25 ~~~gLf~~s~ITrLtLSHN--Kl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~ 101 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHN--KLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSF 101 (264)
T ss_pred hcccccchhhhhhhhcccC--ceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCC
Confidence 4455556777777777776 666778776 88899999999999999999999999999999999888887 8999999
Q ss_pred cccceeecccCCCC--ccchhhhccccCcEEeccCcchhhccchhHHhhhccccccccCCCccccccccCCCccchhhhc
Q 000679 605 KKLEILSFRNSDIQ--QLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELK 682 (1355)
Q Consensus 605 ~~L~~L~L~~~~l~--~lP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 682 (1355)
.-|++|||.+|++. .+|..+-.++.|+.|++++ +..+-+|++ +++|++||.|.+.+|... ..+.+++
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~d-vg~lt~lqil~lrdndll---------~lpkeig 170 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPD-VGKLTNLQILSLRDNDLL---------SLPKEIG 170 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChh-hhhhcceeEEeeccCchh---------hCcHHHH
Confidence 99999999988554 6888888888899999988 457778888 899999999998877653 4577888
Q ss_pred CCCCCCeEEEEeccccCCChhh
Q 000679 683 GLSKLTTLEIHIRDARIMPQDL 704 (1355)
Q Consensus 683 ~L~~L~~L~l~~~~~~~~~~~~ 704 (1355)
.|++|+.|++.++....+|.++
T Consensus 171 ~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 171 DLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHHHHHHHhcccceeeecChhh
Confidence 9999999999988888887764
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.38 E-value=4.3e-14 Score=131.54 Aligned_cols=148 Identities=21% Similarity=0.362 Sum_probs=134.7
Q ss_pred eEEEeCCCCCCCCCCCcc-CCCceEEEEeeccCCCCcccChhhhcCCCcceEEEecCCCccccCcccccccCCcEEEecC
Q 000679 514 SIAISLPNRDIDELPERL-ECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEG 592 (1355)
Q Consensus 514 ~r~lsl~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~ 592 (1355)
+.|+.++++.+..+|..+ ++.+|+.|.++++ -..++|.++ +.+..||.|++.-|.+..+|..|+.++.|++|||.+
T Consensus 35 ITrLtLSHNKl~~vppnia~l~nlevln~~nn--qie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 35 ITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN--QIEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhcccCceeecCCcHHHhhhhhhhhcccc--hhhhcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhhccc
Confidence 678888888888776654 8899999999887 677899987 999999999999999999999999999999999999
Q ss_pred CCCCC---ccccccccccceeecccCCCCccchhhhccccCcEEeccCcchhhccchhHHhhhccccccccCCCccc
Q 000679 593 CQVGD---VAIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQ 666 (1355)
Q Consensus 593 ~~i~~---p~~i~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 666 (1355)
|.+.+ |..|..++.|+.|.|+.|++..+|..+++|++||.|.++. +.+-.+|.. ++.|+.|++|++.+|...
T Consensus 112 nnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpke-ig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 112 NNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPKE-IGDLTRLRELHIQGNRLT 186 (264)
T ss_pred cccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcHH-HHHHHHHHHHhcccceee
Confidence 99887 8999999999999999999999999999999999999999 457789988 999999999999988663
No 18
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.27 E-value=1.6e-10 Score=153.49 Aligned_cols=292 Identities=15% Similarity=0.207 Sum_probs=179.2
Q ss_pred CccccchhHHHHHHHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCC-CCHHHHHHHHHHhh
Q 000679 154 AYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQT-PDLQTIQNKLSSDL 232 (1355)
Q Consensus 154 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l 232 (1355)
....++-|..-.+.+-+ ....+++.|.|++|.||||++..+... ++.++|+++... .+...+...++..+
T Consensus 12 ~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 12 RLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred CccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHH
Confidence 33456777755554432 245689999999999999999998853 236899999744 45666667777666
Q ss_pred cccccc-------------CCCHHHHHHHHHHHHhc-CCeEEEEEeCcccccc--cc-ccCCCCCCccccCCCCCCCcEE
Q 000679 233 ELEFKQ-------------NENVFQRAEKLRQRLKN-VKRVLVILDNIWKLLN--LD-AVGIPFGDVKKERNDDRSRCTV 295 (1355)
Q Consensus 233 ~~~~~~-------------~~~~~~~~~~l~~~l~~-~k~~LlvlDdv~~~~~--~~-~~~~~~~~~~~~~~~~~~~s~i 295 (1355)
+..... ..........+...+.. +.+++||+||+...++ .. .+...+.. ...+.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~-------~~~~~~l 155 (903)
T PRK04841 83 QQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRH-------QPENLTL 155 (903)
T ss_pred HHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHh-------CCCCeEE
Confidence 421111 01223334445555543 5899999999976531 11 12111111 3456788
Q ss_pred EEEeCchhhhh-hc-CCCcceEecC----CCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHhc
Q 000679 296 LLTSRNRDVLC-ND-MNSQKFFLIE----VLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANALKN 369 (1355)
Q Consensus 296 lvTtR~~~v~~-~~-~~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~ 369 (1355)
|||||...-.. .. .......++. +|+.+|+.++|....+.... .+.+.+|.+.++|.|+++..++..++.
T Consensus 156 v~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 156 VVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIE----AAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred EEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCC----HHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 89999842110 00 0112345566 99999999999887655332 344678999999999999998877754
Q ss_pred CChHHHHHHHHHHhccccccccc-chhhhhhhhh-hccccCCchhHHHHHHHhcccCCCCccChHHHHHHHhhcCCCCCC
Q 000679 370 KRLYVWNDSLERLRNSTSRQIHG-MEENVYSSIE-LSYSFLKSEEEKSMFRLCALRKDGSPIPIDDLMRYGIGLGLFSNV 447 (1355)
Q Consensus 370 ~~~~~w~~~l~~l~~~~~~~~~~-~~~~i~~~l~-~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~l~~~w~a~g~~~~~ 447 (1355)
.+.. .......+ .+ ....+...+. -.++.||++ .+..+...|+++ .|+.+.+-... | .
T Consensus 232 ~~~~-~~~~~~~~--------~~~~~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~---~~~~~l~~~l~---~----~ 291 (903)
T PRK04841 232 NNSS-LHDSARRL--------AGINASHLSDYLVEEVLDNVDLE-TRHFLLRCSVLR---SMNDALIVRVT---G----E 291 (903)
T ss_pred CCCc-hhhhhHhh--------cCCCchhHHHHHHHHHHhcCCHH-HHHHHHHhcccc---cCCHHHHHHHc---C----C
Confidence 4210 01111111 01 0112333332 337799998 899999999987 44433222111 1 0
Q ss_pred cchHHHHHHHHHHHHHHHhccceec-CCCC--ccchhhHHHHHHHHHh
Q 000679 448 RTSEAARNRVYTLVDNLKASSLLLD-GDKD--EVKLHDIIYAVAVSIA 492 (1355)
Q Consensus 448 ~~~~~~~~~~~~~~~~L~~~~l~~~-~~~~--~~~mh~lv~~~~~~~~ 492 (1355)
. .....+++|.+++++.. .+.+ .|++|++++++++...
T Consensus 292 ---~----~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 292 ---E----NGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred ---C----cHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 1 12346889999998653 3322 4999999999999876
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.25 E-value=5e-13 Score=141.61 Aligned_cols=130 Identities=20% Similarity=0.258 Sum_probs=76.8
Q ss_pred CCCceEEEEeeccCCCCcccChhhhcCCCcceEEEecCCCccccCc-ccccccCCcEEEecCCCCCC--ccccccccccc
Q 000679 532 ECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPS-SLVCLISLRTLSLEGCQVGD--VAIVGQLKKLE 608 (1355)
Q Consensus 532 ~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~L~~Lr~L~L~~~~i~~--p~~i~~L~~L~ 608 (1355)
.|+...-..+........++|.++ -.....++|..|.|+.+|+ .|+.+++||.|+|++|.|+. |..|..|..|-
T Consensus 42 ~Cs~~~g~~VdCr~~GL~eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~ 118 (498)
T KOG4237|consen 42 TCSDVEGGIVDCRGKGLTEVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLL 118 (498)
T ss_pred ccCCCCCceEEccCCCcccCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhh
Confidence 344433334433323445566543 2345566777777777765 46777777777777777766 66666666665
Q ss_pred eeeccc-CCCCccchh-hhccccCcEEeccCcchhhccchhHHhhhccccccccCCCcc
Q 000679 609 ILSFRN-SDIQQLPRE-IGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFS 665 (1355)
Q Consensus 609 ~L~L~~-~~l~~lP~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~ 665 (1355)
.|-+-+ |+|+.+|.+ ++.|..|+.|.+.- +.+.-++.+.+..|.+|..|.+.+|.+
T Consensus 119 ~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa-n~i~Cir~~al~dL~~l~lLslyDn~~ 176 (498)
T KOG4237|consen 119 SLVLYGNNKITDLPKGAFGGLSSLQRLLLNA-NHINCIRQDALRDLPSLSLLSLYDNKI 176 (498)
T ss_pred HHHhhcCCchhhhhhhHhhhHHHHHHHhcCh-hhhcchhHHHHHHhhhcchhcccchhh
Confidence 555544 566666654 46666666666555 335555555566666666666655543
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.19 E-value=8.8e-11 Score=143.49 Aligned_cols=92 Identities=18% Similarity=0.172 Sum_probs=56.3
Q ss_pred cceEEEecCCCccccCcccccccCCcEEEecCCCCCC-ccccccccccceeecccCCCCccchhhhccccCcEEeccCcc
Q 000679 561 ELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGD-VAIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCR 639 (1355)
Q Consensus 561 ~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~-p~~i~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~ 639 (1355)
.-.+|+++++.++.+|+.+. .+|+.|++.+|.++. |. .+.+|++|++++|.++.+|.. ..+|+.|++++|
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N- 272 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN- 272 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCcccCc---ccccceeeccCC-
Confidence 34566777777777776665 367777777777666 43 245677777777777766642 356667777664
Q ss_pred hhhccchhHHhhhccccccccCCCcc
Q 000679 640 RLQAIAPNVISKLSRLEELYMGDSFS 665 (1355)
Q Consensus 640 ~l~~~p~~~i~~L~~L~~L~l~~~~~ 665 (1355)
.+..+|.. ..+|+.|++++|.+
T Consensus 273 ~L~~Lp~l----p~~L~~L~Ls~N~L 294 (788)
T PRK15387 273 PLTHLPAL----PSGLCKLWIFGNQL 294 (788)
T ss_pred chhhhhhc----hhhcCEEECcCCcc
Confidence 35555542 24455666666544
No 21
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.18 E-value=5.5e-09 Score=123.78 Aligned_cols=293 Identities=17% Similarity=0.183 Sum_probs=170.1
Q ss_pred cccchhHHHHHHHHHHhh----cCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHh
Q 000679 156 EQFDSRMKIFQNIMEVLK----DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSD 231 (1355)
Q Consensus 156 ~~~~gr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 231 (1355)
..++||++++++|...+. +.....+.|+|++|+|||++++.++++.......-.+++|++....+...++..|+++
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 458899999999999885 2344678899999999999999999987644323456677777777888999999998
Q ss_pred hcccc-c-cCCCHHHHHHHHHHHHhc-CCeEEEEEeCccccc---cccccCCCCCCccccCCCCCCCcE--EEEEeCchh
Q 000679 232 LELEF-K-QNENVFQRAEKLRQRLKN-VKRVLVILDNIWKLL---NLDAVGIPFGDVKKERNDDRSRCT--VLLTSRNRD 303 (1355)
Q Consensus 232 l~~~~-~-~~~~~~~~~~~l~~~l~~-~k~~LlvlDdv~~~~---~~~~~~~~~~~~~~~~~~~~~~s~--ilvTtR~~~ 303 (1355)
+.... . ...+..+....+.+.+.. +++.+||+|+++... ..+.+ ..+.... ....+++ +|.++....
T Consensus 110 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l-~~l~~~~----~~~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 110 LFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVL-YSLLRAH----EEYPGARIGVIGISSDLT 184 (394)
T ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHH-HHHHHhh----hccCCCeEEEEEEECCcc
Confidence 86521 1 113455666777777764 356899999998753 11111 1110000 0112223 566665543
Q ss_pred hhhh------cCCCcceEecCCCCHHHHHHHHHHHhCCC-----CCCcchHHHHHHHHHHhCCChHHHHHHHHHH--h--
Q 000679 304 VLCN------DMNSQKFFLIEVLSYEEAWCLFEKIVGDS-----AKASDFRVIADEIVRRCGGLPVAIKTIANAL--K-- 368 (1355)
Q Consensus 304 v~~~------~~~~~~~~~l~~L~~~~~~~lf~~~~~~~-----~~~~~~~~~~~~i~~~c~glPLai~~~~~~l--~-- 368 (1355)
+... ..-....+.+.+++.++..+++..++... .....++.+++......|..+.|+.++-.+. +
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 3210 01113467899999999999999887321 1222223333333333466778877764332 1
Q ss_pred -cC---ChHHHHHHHHHHhcccccccccchhhhhhhhhhccccCCchhHHHHHHHhc-ccCC-CCccChHHHHHH--Hhh
Q 000679 369 -NK---RLYVWNDSLERLRNSTSRQIHGMEENVYSSIELSYSFLKSEEEKSMFRLCA-LRKD-GSPIPIDDLMRY--GIG 440 (1355)
Q Consensus 369 -~~---~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s-~fp~-~~~i~~~~l~~~--w~a 440 (1355)
+. +.+.+..+.+.+. .....-.+..||.+ .|..+..++ .... ...+....+... .++
T Consensus 265 ~~~~~I~~~~v~~a~~~~~--------------~~~~~~~~~~L~~~-~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~ 329 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKSE--------------IVHLSEVLRTLPLH-EKLLLRAIVRLLKKGGDEVTTGEVYEEYKELC 329 (394)
T ss_pred cCCCCcCHHHHHHHHHHHH--------------HHHHHHHHhcCCHH-HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 11 4455666555431 11234457789887 343333222 1221 134555555433 222
Q ss_pred cCCCCCCcchHHHHHHHHHHHHHHHhccceec
Q 000679 441 LGLFSNVRTSEAARNRVYTLVDNLKASSLLLD 472 (1355)
Q Consensus 441 ~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 472 (1355)
+.+-.. ......+.++++.|...++|..
T Consensus 330 ~~~~~~----~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 330 EELGYE----PRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred HHcCCC----cCcHHHHHHHHHHHHhcCCeEE
Confidence 211111 0122445667888888888863
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.15 E-value=8.6e-11 Score=144.84 Aligned_cols=92 Identities=12% Similarity=0.230 Sum_probs=44.0
Q ss_pred ceEEEecCCCccccCcccccccCCcEEEecCCCCCC-ccccccccccceeecccCCCCccchhhhccccCcEEeccCcch
Q 000679 562 LRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGD-VAIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRR 640 (1355)
Q Consensus 562 Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~-p~~i~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~ 640 (1355)
..+|+++++.++.+|..+. .+|+.|+|++|.++. |..+. .+|++|++++|.++.+|..+. .+|+.|++++|.
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~- 252 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR- 252 (754)
T ss_pred ceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCc-
Confidence 4455555555555554443 345555555555554 43332 355555555555555554432 245555555532
Q ss_pred hhccchhHHhhhccccccccCCC
Q 000679 641 LQAIAPNVISKLSRLEELYMGDS 663 (1355)
Q Consensus 641 l~~~p~~~i~~L~~L~~L~l~~~ 663 (1355)
+..+|.. +. .+|+.|++++|
T Consensus 253 L~~LP~~-l~--s~L~~L~Ls~N 272 (754)
T PRK15370 253 ITELPER-LP--SALQSLDLFHN 272 (754)
T ss_pred cCcCChh-Hh--CCCCEEECcCC
Confidence 4445443 21 34555555444
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.14 E-value=3.5e-10 Score=138.35 Aligned_cols=250 Identities=19% Similarity=0.162 Sum_probs=151.8
Q ss_pred EEeCCCCCCCCCCCccCCCceEEEEeeccCCCCcccChhhhcCCCcceEEEecCCCccccCcccccccCCcEEEecCCCC
Q 000679 516 AISLPNRDIDELPERLECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQV 595 (1355)
Q Consensus 516 ~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i 595 (1355)
.+.+..+.+..+|.... ++|+.|.+..| ....+|. .+++|++|++++|.++.+|.. ..+|+.|++++|.+
T Consensus 205 ~LdLs~~~LtsLP~~l~-~~L~~L~L~~N--~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L 274 (788)
T PRK15387 205 VLNVGESGLTTLPDCLP-AHITTLVIPDN--NLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPL 274 (788)
T ss_pred EEEcCCCCCCcCCcchh-cCCCEEEccCC--cCCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCch
Confidence 45555566666666442 47888888776 5556664 257888888888888888763 35788888888887
Q ss_pred CC-ccccccccccceeecccCCCCccchhhhccccCcEEeccCcchhhccchhHHhhhccccccccCCCccccccccCCC
Q 000679 596 GD-VAIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGS 674 (1355)
Q Consensus 596 ~~-p~~i~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 674 (1355)
.. |.. ..+|+.|++++|.++.+|.. +++|+.|++++| .+..+|.. . .+|+.|++++|.+.
T Consensus 275 ~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l-p---~~L~~L~Ls~N~L~-------- 335 (788)
T PRK15387 275 THLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL-P---SELCKLWAYNNQLT-------- 335 (788)
T ss_pred hhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC-c---ccccccccccCccc--------
Confidence 76 442 35677888888888888863 467888888884 57777652 2 35667777776552
Q ss_pred ccchhhhcCC-CCCCeEEEEeccccCCChhhhhcccceEEEEEecccccccccccccEEEeccccchhhhhhhHHHHhcc
Q 000679 675 NASLVELKGL-SKLTTLEIHIRDARIMPQDLISMKLEIFRMFIGNVVDWYHKFERSRLVKLDKLEKNILLGQGMKMFLKR 753 (1355)
Q Consensus 675 ~~~~~~L~~L-~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~L~~l~~~~~~~~~~~~~l~~ 753 (1355)
.+..+ .+|+.|+++.|....+|.. ..+|+
T Consensus 336 -----~LP~lp~~Lq~LdLS~N~Ls~LP~l--p~~L~------------------------------------------- 365 (788)
T PRK15387 336 -----SLPTLPSGLQELSVSDNQLASLPTL--PSELY------------------------------------------- 365 (788)
T ss_pred -----cccccccccceEecCCCccCCCCCC--Ccccc-------------------------------------------
Confidence 11112 3688888887776665542 11222
Q ss_pred cceEEEccccCcccccccccccccccCCcEEeeecCCceeEeccccCcccccCCcccceeccccccccchhcccCCCCCC
Q 000679 754 TEDLYLHDLKGFQNVVHELDDGEVFSELKHLHVEHSYEILHIVSSIGQVCCKVFPLLESLSLCRLFNLEKICHNRLHEDE 833 (1355)
Q Consensus 754 L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~ 833 (1355)
.|.+.+.... .++. ..++|+.|++.++. +..++. ..++|+.|+++++ .+..++.
T Consensus 366 --~L~Ls~N~L~-----~LP~--l~~~L~~LdLs~N~-Lt~LP~--------l~s~L~~LdLS~N-~LssIP~------- 419 (788)
T PRK15387 366 --KLWAYNNRLT-----SLPA--LPSGLKELIVSGNR-LTSLPV--------LPSELKELMVSGN-RLTSLPM------- 419 (788)
T ss_pred --eehhhccccc-----cCcc--cccccceEEecCCc-ccCCCC--------cccCCCEEEccCC-cCCCCCc-------
Confidence 2222221110 1110 12356666665542 222221 1346777777763 3444421
Q ss_pred CCCCccEEEEecCCCcccccchhhHHhcccccEEEEcccc
Q 000679 834 SFSNLRIIKVGECDKLRHLFSFSMAKNLLRLQKISVFDCK 873 (1355)
Q Consensus 834 ~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~ 873 (1355)
.+.+|+.|+++++ .++.+|. .+..+++|+.|++++++
T Consensus 420 l~~~L~~L~Ls~N-qLt~LP~--sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 420 LPSGLLSLSVYRN-QLTRLPE--SLIHLSSETTVNLEGNP 456 (788)
T ss_pred chhhhhhhhhccC-cccccCh--HHhhccCCCeEECCCCC
Confidence 2346777777774 4666764 36778888888888764
No 24
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.10 E-value=1.1e-08 Score=114.22 Aligned_cols=186 Identities=18% Similarity=0.212 Sum_probs=116.7
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHH-
Q 000679 174 DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQR- 252 (1355)
Q Consensus 174 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~- 252 (1355)
..+.+++.|+|++|+||||+++.+++..... .+ .++|+ +....+..+++..|+..++..... .........+.+.
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l 115 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFL 115 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHH
Confidence 3445689999999999999999999886522 11 22333 334457788999999888765433 3333333344333
Q ss_pred ---HhcCCeEEEEEeCccccc--cccccCCCCCCccccCCCCCCCcEEEEEeCchhhhh--------hcCCCcceEecCC
Q 000679 253 ---LKNVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLC--------NDMNSQKFFLIEV 319 (1355)
Q Consensus 253 ---l~~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~--------~~~~~~~~~~l~~ 319 (1355)
...+++.++|+||+|... .++.+.. +... .........|++|....-... ........+++++
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~-l~~~---~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~ 191 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRM-LSNF---QTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGP 191 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHH-HhCc---ccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCC
Confidence 335688999999998863 3333321 1110 000223335556654331110 0111234678999
Q ss_pred CCHHHHHHHHHHHhCC---CCCCcchHHHHHHHHHHhCCChHHHHHHHHHH
Q 000679 320 LSYEEAWCLFEKIVGD---SAKASDFRVIADEIVRRCGGLPVAIKTIANAL 367 (1355)
Q Consensus 320 L~~~~~~~lf~~~~~~---~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 367 (1355)
++.+|..+++...+.. .....-..+..+.|++.++|.|..|..++..+
T Consensus 192 l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 192 LDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999999999877632 11122235788999999999999999988776
No 25
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.09 E-value=3.2e-08 Score=115.92 Aligned_cols=297 Identities=15% Similarity=0.159 Sum_probs=168.7
Q ss_pred ccchhHHHHHHHHHHhhc----CCceEEEEEecCCCcHHHHHHHHHHHHhhh-cCC---CEEEEEEeCCCCCHHHHHHHH
Q 000679 157 QFDSRMKIFQNIMEVLKD----TNVGMIGVYGVNGVGKTTLVKQIAMQVIED-KLF---DKVVFVEVTQTPDLQTIQNKL 228 (1355)
Q Consensus 157 ~~~gr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F---~~~~wv~~s~~~~~~~~~~~i 228 (1355)
.++||++++++|..++.. .....+.|+|++|+|||++++.+++..... ... -..+|+++....+...++..|
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i 95 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVEL 95 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHH
Confidence 588999999999999862 345689999999999999999999876432 111 145678877777788899999
Q ss_pred HHhhc---ccccc-CCCHHHHHHHHHHHHhc-CCeEEEEEeCccccc-cccccCCCCCCccccCCCCCCCcEEEEEeCch
Q 000679 229 SSDLE---LEFKQ-NENVFQRAEKLRQRLKN-VKRVLVILDNIWKLL-NLDAVGIPFGDVKKERNDDRSRCTVLLTSRNR 302 (1355)
Q Consensus 229 ~~~l~---~~~~~-~~~~~~~~~~l~~~l~~-~k~~LlvlDdv~~~~-~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~ 302 (1355)
+.++. ..... ..+..+....+.+.+.. +++++||||+++... ..+.+...+..+....-..+....+|.+|...
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~ 175 (365)
T TIGR02928 96 ANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDL 175 (365)
T ss_pred HHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCc
Confidence 99883 22111 12344455666666642 468899999998772 22221111111000000011233455555444
Q ss_pred hhhhh-----cCC-CcceEecCCCCHHHHHHHHHHHhCC----CCCCcchHHHHHHHHHHhCCChH-HHHHHHHHH----
Q 000679 303 DVLCN-----DMN-SQKFFLIEVLSYEEAWCLFEKIVGD----SAKASDFRVIADEIVRRCGGLPV-AIKTIANAL---- 367 (1355)
Q Consensus 303 ~v~~~-----~~~-~~~~~~l~~L~~~~~~~lf~~~~~~----~~~~~~~~~~~~~i~~~c~glPL-ai~~~~~~l---- 367 (1355)
..... ... ....+.+++.+.++..+++..++.. ....++..+.+.+++....|.|- |+.++-...
T Consensus 176 ~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~ 255 (365)
T TIGR02928 176 KFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAE 255 (365)
T ss_pred chHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 22110 001 1256889999999999999988731 12233333445567777778884 433332211
Q ss_pred hc---C-ChHHHHHHHHHHhcccccccccchhhhhhhhhhccccCCchhHHHHHHHhccc--CCCCccChHHHHHHHh--
Q 000679 368 KN---K-RLYVWNDSLERLRNSTSRQIHGMEENVYSSIELSYSFLKSEEEKSMFRLCALR--KDGSPIPIDDLMRYGI-- 439 (1355)
Q Consensus 368 ~~---~-~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~f--p~~~~i~~~~l~~~w~-- 439 (1355)
.. . +.+..+.+.+.+. .....-.+..||.+ .+..+..++.. .++..+....+...+-
T Consensus 256 ~~~~~~it~~~v~~a~~~~~--------------~~~~~~~i~~l~~~-~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~ 320 (365)
T TIGR02928 256 REGAERVTEDHVEKAQEKIE--------------KDRLLELIRGLPTH-SKLVLLAIANLAANDEDPFRTGEVYEVYKEV 320 (365)
T ss_pred HcCCCCCCHHHHHHHHHHHH--------------HHHHHHHHHcCCHH-HHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 11 1 3445555544431 12233456688876 45444433321 1344566666665332
Q ss_pred hcCCCCCCcchHHHHHHHHHHHHHHHhccceec
Q 000679 440 GLGLFSNVRTSEAARNRVYTLVDNLKASSLLLD 472 (1355)
Q Consensus 440 a~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 472 (1355)
++.+ . ........+.++++.|...|++..
T Consensus 321 ~~~~-~---~~~~~~~~~~~~l~~l~~~gli~~ 349 (365)
T TIGR02928 321 CEDI-G---VDPLTQRRISDLLNELDMLGLVEA 349 (365)
T ss_pred HHhc-C---CCCCcHHHHHHHHHHHHhcCCeEE
Confidence 1111 0 001223556677888888888864
No 26
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.09 E-value=1.8e-12 Score=138.85 Aligned_cols=300 Identities=19% Similarity=0.248 Sum_probs=159.0
Q ss_pred CcceeccccccccccccCCCCCCCCcCCCccEEEEecccccccccchhHHhhhcccceeEEeeccccceecccCcccccc
Q 000679 909 SLEELDLYSLITIEKLWPKQFQGMSSCQNLTKVTVAFCDRLKYLFSYSMVNSLVQLQHLEICYCWSMEGVVETNSTESRR 988 (1355)
Q Consensus 909 ~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~ 988 (1355)
.|+.|.+++|.....-...... ..+|++++|.+.+|.++++-.-.++...++.|++|++..|.+++...-...
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~--~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l----- 211 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFA--SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYL----- 211 (483)
T ss_pred ccccccccccccCCcchhhHHh--hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHH-----
Confidence 4555666665433322111111 346666666666666666554444555566666666666665554322100
Q ss_pred CCcceeccccccccccccCCCCCCccccccccccccCCccEEeeccCcCcceeccccccccccccCCCcccccccCCCCc
Q 000679 989 DEGRLIEIVFPKLLYLRLIDLPKLMGFSIGIHSVEFPSLLELQIDDCPNMKRFISISSSQDNIHANPQPLFDEKVGTPNL 1068 (1355)
Q Consensus 989 ~~~~~~~~~l~~L~~L~l~~l~~l~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~l~~~~~~~f~~~~~l~~L 1068 (1355)
-..+++|++++++-|+.+..-........+..++.+...+|..+..=..+ ... .+..-+
T Consensus 212 ------a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~--------~~~-------~~~~~i 270 (483)
T KOG4341|consen 212 ------AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALL--------KAA-------AYCLEI 270 (483)
T ss_pred ------HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHH--------HHh-------ccChHh
Confidence 11255555555555555443111000001233444444445433211000 000 111334
Q ss_pred eEEEEccccchhhhhccccccccccceeeccccccccccCCCcceEeeCCccccCCCccEEEEecCCCccc--ccccccc
Q 000679 1069 MTLRVSYCHNIEEIIRHVGEDVKENRITFNQLKNLELDDLPSLTSFCLGNCTLEFPSLERVFVRNCRNMKT--FSEGVVC 1146 (1355)
Q Consensus 1069 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~l~sL~~L~i~~c~~l~~--lp~~~~~ 1146 (1355)
.++++.+|..+++.- .-.....+..|+.+...+|.+++...+.....+.++|+.|.+.+|..++. +..-..+
T Consensus 271 ~~lnl~~c~~lTD~~------~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn 344 (483)
T KOG4341|consen 271 LKLNLQHCNQLTDED------LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRN 344 (483)
T ss_pred hccchhhhccccchH------HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcC
Confidence 455555665554321 11122346677777777777766655554445667788888877776552 2222334
Q ss_pred ccccceeeeeccccccccccccccCCcchhhhhheeeccCccceeEeccCCCcceecccC-CCCccccCCCcEEEEecCC
Q 000679 1147 APKLKKVQVTKKEQEEDEWCSCWEGNLNSTIQKLFVVGFHDIKDLKLSQFPHLKEIWHGQ-ALNVSIFSNLRSLGVDNCT 1225 (1355)
Q Consensus 1147 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-p~~~~~l~~L~~L~l~~C~ 1225 (1355)
.+.|+.+++.+|..+.+. .+.+ + -.+|+.|+.|.++.|..+++--... ...-.....|+.|.+++|+
T Consensus 345 ~~~Le~l~~e~~~~~~d~-------tL~s----l-s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p 412 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDG-------TLAS----L-SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP 412 (483)
T ss_pred Chhhhhhcccccceehhh-------hHhh----h-ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCC
Confidence 667777777766433221 1111 1 1278899999999888766551000 1223456778999999999
Q ss_pred CCCCCcchhHHhhcCCCCEEEEeccCCcee
Q 000679 1226 NMSSAIPANLLRCLNNLERLKVRNCDSLEE 1255 (1355)
Q Consensus 1226 ~l~~l~p~~~l~~l~sL~~L~i~~C~~l~~ 1255 (1355)
.++.. .-+.+..+++||.+++.+|..+..
T Consensus 413 ~i~d~-~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 413 LITDA-TLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred CchHH-HHHHHhhCcccceeeeechhhhhh
Confidence 88765 345677888899999999886654
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.09 E-value=3e-10 Score=140.18 Aligned_cols=135 Identities=13% Similarity=0.264 Sum_probs=96.3
Q ss_pred EEEeCCCCCCCCCCCccCCCceEEEEeeccCCCCcccChhhhcCCCcceEEEecCCCccccCcccccccCCcEEEecCCC
Q 000679 515 IAISLPNRDIDELPERLECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQ 594 (1355)
Q Consensus 515 r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~ 594 (1355)
..+.+.+..+..+|... .++++.|.+.+| ....+|..++ .+|++|++++|.+..+|..+. .+|+.|+|++|.
T Consensus 181 ~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N--~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 181 TELRLKILGLTTIPACI-PEQITTLILDNN--ELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR 252 (754)
T ss_pred eEEEeCCCCcCcCCccc-ccCCcEEEecCC--CCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCc
Confidence 45556666666666533 256888888776 5567777654 478888888888888887654 478888888888
Q ss_pred CCC-ccccccccccceeecccCCCCccchhhhccccCcEEeccCcchhhccchhHHhhhccccccccCCCcc
Q 000679 595 VGD-VAIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFS 665 (1355)
Q Consensus 595 i~~-p~~i~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~ 665 (1355)
+.. |..+. .+|++|++++|.+..+|..+. .+|++|++++| .+..+|.. +. .+|++|++++|.+
T Consensus 253 L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-lp--~sL~~L~Ls~N~L 316 (754)
T PRK15370 253 ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-LP--SGITHLNVQSNSL 316 (754)
T ss_pred cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCccc-ch--hhHHHHHhcCCcc
Confidence 877 66554 478888888888888887654 47888888885 57777764 32 4677788777655
No 28
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.07 E-value=2.4e-10 Score=125.23 Aligned_cols=202 Identities=21% Similarity=0.317 Sum_probs=107.6
Q ss_pred cchhHHHHHHHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHH---------H
Q 000679 158 FDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNK---------L 228 (1355)
Q Consensus 158 ~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~---------i 228 (1355)
|+||++++++|.+++..+..+.+.|+|+.|+|||+|++++.+..+... + .++|+...+......+... +
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~-~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKG-Y-KVVYIDFLEESNESSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--E-E-CCCHHCCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcC-C-cEEEEecccchhhhHHHHHHHHHHHHHHH
Confidence 789999999999999877678999999999999999999999874221 1 3445544444332221111 1
Q ss_pred HHhhccccc----------cCCCHHHHHHHHHHHHhc-CCeEEEEEeCccccc-ccc---ccCCCCCCccccCCCCCCCc
Q 000679 229 SSDLELEFK----------QNENVFQRAEKLRQRLKN-VKRVLVILDNIWKLL-NLD---AVGIPFGDVKKERNDDRSRC 293 (1355)
Q Consensus 229 ~~~l~~~~~----------~~~~~~~~~~~l~~~l~~-~k~~LlvlDdv~~~~-~~~---~~~~~~~~~~~~~~~~~~~s 293 (1355)
...+..... ...........+.+.+.. +++++||+||+.... ..+ .+...+..+++......+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 158 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVS 158 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEE
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCce
Confidence 122221111 011233444555555553 356999999998776 222 22112222222222133344
Q ss_pred EEEEEeCchhhhhh-------cCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 000679 294 TVLLTSRNRDVLCN-------DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKT 362 (1355)
Q Consensus 294 ~ilvTtR~~~v~~~-------~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 362 (1355)
+|+++........ ..+....+.+++++.+++++++...+.....-+.-++..++|+..+||+|..|..
T Consensus 159 -~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 159 -IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp -EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred -EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 4444444333221 1233345999999999999999998744311112345578999999999998764
No 29
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.03 E-value=1.1e-08 Score=120.82 Aligned_cols=294 Identities=17% Similarity=0.183 Sum_probs=183.4
Q ss_pred ccccchhHHHHHHHHHHhhc-CCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCC-CHHHHHHHHHHhh
Q 000679 155 YEQFDSRMKIFQNIMEVLKD-TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP-DLQTIQNKLSSDL 232 (1355)
Q Consensus 155 ~~~~~gr~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l 232 (1355)
....+-|.. +++.|.. .+.+.+.|..|+|.||||++.+...... .=..+.|.++++.. ++..+...++..+
T Consensus 18 ~~~~v~R~r----L~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~~---~~~~v~Wlslde~dndp~rF~~yLi~al 90 (894)
T COG2909 18 PDNYVVRPR----LLDRLRRANDYRLILISAPAGFGKTTLLAQWRELAA---DGAAVAWLSLDESDNDPARFLSYLIAAL 90 (894)
T ss_pred cccccccHH----HHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhcC---cccceeEeecCCccCCHHHHHHHHHHHH
Confidence 334556654 4455553 4789999999999999999999987332 23568999998654 5788888888887
Q ss_pred ccccccC-------------CCHHHHHHHHHHHHhc-CCeEEEEEeCcccccc---ccccCCCCCCccccCCCCCCCcEE
Q 000679 233 ELEFKQN-------------ENVFQRAEKLRQRLKN-VKRVLVILDNIWKLLN---LDAVGIPFGDVKKERNDDRSRCTV 295 (1355)
Q Consensus 233 ~~~~~~~-------------~~~~~~~~~l~~~l~~-~k~~LlvlDdv~~~~~---~~~~~~~~~~~~~~~~~~~~~s~i 295 (1355)
+.-.+.. .+.......+...+.. .++..+||||-.-..+ -..+...+.. ...+-..
T Consensus 91 ~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~-------~P~~l~l 163 (894)
T COG2909 91 QQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH-------APENLTL 163 (894)
T ss_pred HHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh-------CCCCeEE
Confidence 6433221 2233344445554443 3789999999654321 1122222222 5668899
Q ss_pred EEEeCchhhhhh--cCCCcceEecC----CCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHhc
Q 000679 296 LLTSRNRDVLCN--DMNSQKFFLIE----VLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANALKN 369 (1355)
Q Consensus 296 lvTtR~~~v~~~--~~~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~ 369 (1355)
|||||+..-... ..-.....++. .++.+|+.++|....+..-+.. .++.+.+...|-+-|+..++=.++.
T Consensus 164 vv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~----~~~~L~~~teGW~~al~L~aLa~~~ 239 (894)
T COG2909 164 VVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAA----DLKALYDRTEGWAAALQLIALALRN 239 (894)
T ss_pred EEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChH----HHHHHHhhcccHHHHHHHHHHHccC
Confidence 999999843210 00112233333 6889999999998775544433 3778999999999999999887774
Q ss_pred C-ChHHHHHHHHHHhcccccccccchhhhhh-hhhhccccCCchhHHHHHHHhcccCCCCccChHHHHHHHhhcCCCCCC
Q 000679 370 K-RLYVWNDSLERLRNSTSRQIHGMEENVYS-SIELSYSFLKSEEEKSMFRLCALRKDGSPIPIDDLMRYGIGLGLFSNV 447 (1355)
Q Consensus 370 ~-~~~~w~~~l~~l~~~~~~~~~~~~~~i~~-~l~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~l~~~w~a~g~~~~~ 447 (1355)
+ +.+.-...+. +....+.. ...=-++.||++ +|..++.||+++. |. +.|+..--
T Consensus 240 ~~~~~q~~~~Ls-----------G~~~~l~dYL~eeVld~Lp~~-l~~FLl~~svl~~---f~-~eL~~~Lt-------- 295 (894)
T COG2909 240 NTSAEQSLRGLS-----------GAASHLSDYLVEEVLDRLPPE-LRDFLLQTSVLSR---FN-DELCNALT-------- 295 (894)
T ss_pred CCcHHHHhhhcc-----------chHHHHHHHHHHHHHhcCCHH-HHHHHHHHHhHHH---hh-HHHHHHHh--------
Confidence 4 3332222111 00010110 122235789998 8999999999872 11 22322211
Q ss_pred cchHHHHHHHHHHHHHHHhccceec-CCCCc--cchhhHHHHHHHHHhccc
Q 000679 448 RTSEAARNRVYTLVDNLKASSLLLD-GDKDE--VKLHDIIYAVAVSIARDE 495 (1355)
Q Consensus 448 ~~~~~~~~~~~~~~~~L~~~~l~~~-~~~~~--~~mh~lv~~~~~~~~~~~ 495 (1355)
.++.+...+++|.+++|+.. -++.+ |+.|+++.||.+.....+
T Consensus 296 -----g~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 296 -----GEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred -----cCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccc
Confidence 12233457999999998753 33322 999999999999887543
No 30
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.02 E-value=6e-12 Score=134.87 Aligned_cols=138 Identities=18% Similarity=0.268 Sum_probs=77.7
Q ss_pred ccccccccccCCCcceEeeCCccccCCCccEEEEecCCCccc--cccccccccccceeeeeccccccccccccccCCcch
Q 000679 1098 NQLKNLELDDLPSLTSFCLGNCTLEFPSLERVFVRNCRNMKT--FSEGVVCAPKLKKVQVTKKEQEEDEWCSCWEGNLNS 1175 (1355)
Q Consensus 1098 ~~L~~L~l~~~~~L~~l~~~~~~~~l~sL~~L~i~~c~~l~~--lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~ 1175 (1355)
++|+.+.+..|+.++.........+++.|+.+++.+|..... +-.--.+.+.|+.|.+++|..+++...-.. .+
T Consensus 320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l----~~ 395 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL----SS 395 (483)
T ss_pred CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh----hh
Confidence 444444444444444433332233455666666666544431 222222356667777766654444310000 00
Q ss_pred hhhhheeeccCccceeEeccCCCcceecccCCCCccccCCCcEEEEecCCCCCCCcchhHHhhcCCCCEEEE
Q 000679 1176 TIQKLFVVGFHDIKDLKLSQFPHLKEIWHGQALNVSIFSNLRSLGVDNCTNMSSAIPANLLRCLNNLERLKV 1247 (1355)
Q Consensus 1176 ~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~p~~~~~l~~L~~L~l~~C~~l~~l~p~~~l~~l~sL~~L~i 1247 (1355)
. ..+...|+.|.+++|+.+++-. ...+..+++|+.+++.+|..++.-.......+++++++.-.
T Consensus 396 ~-----~c~~~~l~~lEL~n~p~i~d~~---Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 396 S-----SCSLEGLEVLELDNCPLITDAT---LEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred c-----cccccccceeeecCCCCchHHH---HHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 0 1255778899999999776542 23566788999999999999987633444466676665544
No 31
>PF05729 NACHT: NACHT domain
Probab=99.00 E-value=2.1e-09 Score=110.45 Aligned_cols=150 Identities=24% Similarity=0.312 Sum_probs=95.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhhcC----CCEEEEEEeCCCCCHH---HHHHHHHHhhccccccCCCHHHHHHHHH
Q 000679 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKL----FDKVVFVEVTQTPDLQ---TIQNKLSSDLELEFKQNENVFQRAEKLR 250 (1355)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 250 (1355)
+++.|+|.+|+||||+++.++.+...... +...+|+..++..... .+...|..+....... .. ..+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~---~~---~~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAP---IE---ELLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhh---hH---HHHH
Confidence 58999999999999999999998875543 3467777776554432 3444444443322111 11 1233
Q ss_pred HHHhcCCeEEEEEeCcccccccccc--CCCCCCccccCCC--CCCCcEEEEEeCchhh--hhhcCCCcceEecCCCCHHH
Q 000679 251 QRLKNVKRVLVILDNIWKLLNLDAV--GIPFGDVKKERND--DRSRCTVLLTSRNRDV--LCNDMNSQKFFLIEVLSYEE 324 (1355)
Q Consensus 251 ~~l~~~k~~LlvlDdv~~~~~~~~~--~~~~~~~~~~~~~--~~~~s~ilvTtR~~~v--~~~~~~~~~~~~l~~L~~~~ 324 (1355)
..+...++++||+|++++...-... ...+..++..+.. ...+++++||+|.... ..........+++++|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 3444469999999999876431110 0001111111111 2568999999999866 22234445689999999999
Q ss_pred HHHHHHHHh
Q 000679 325 AWCLFEKIV 333 (1355)
Q Consensus 325 ~~~lf~~~~ 333 (1355)
..+++.++.
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999998875
No 32
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.97 E-value=9.3e-11 Score=124.68 Aligned_cols=126 Identities=22% Similarity=0.336 Sum_probs=81.9
Q ss_pred ceEEEEeeccCCCCcccChhhhcCCCcceEEEecCCCcccc-CcccccccCCcEEEecC-CCCCC-c-ccccccccccee
Q 000679 535 KLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSL-PSSLVCLISLRTLSLEG-CQVGD-V-AIVGQLKKLEIL 610 (1355)
Q Consensus 535 ~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~L~~Lr~L~L~~-~~i~~-p-~~i~~L~~L~~L 610 (1355)
....+.+..| .+..+|+.+|+.++.||.|||++|.|+.+ |+.|..|..|-.|-+-+ |+|++ | ..|++|..|+-|
T Consensus 68 ~tveirLdqN--~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQN--QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccC--CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 3444555554 56677777777777777777777777664 66677777666555554 66776 3 456777777777
Q ss_pred ecccCCCCccch-hhhccccCcEEeccCcchhhccchhHHhhhccccccccCCC
Q 000679 611 SFRNSDIQQLPR-EIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDS 663 (1355)
Q Consensus 611 ~L~~~~l~~lP~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~ 663 (1355)
.+.-|++.-++. .+..|++|..|.+.+ +.+..++.+.+..+.+++++.+..+
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcC
Confidence 777776665543 356677777777766 4566666655666777777665444
No 33
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.92 E-value=2.2e-08 Score=114.30 Aligned_cols=279 Identities=14% Similarity=0.102 Sum_probs=149.7
Q ss_pred cCCccccchhHHHHHHHHHHhh-----cCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHH
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLK-----DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQN 226 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 226 (1355)
|.....|+||++.++.+..++. ....+.+.++|++|+|||++|+.+++..... + .++..+. ......+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~~-~~~~~~l~ 94 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGPA-LEKPGDLA 94 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEeccc-ccChHHHH
Confidence 4556789999999998887775 2335678899999999999999999987422 1 1222111 11112222
Q ss_pred HHHHhhcccc----cc-CCCHHHHHHHHHHHHhcCCeEEEEEeCccccccccccCCCCCCccccCCCCCCCcEEEEEeCc
Q 000679 227 KLSSDLELEF----KQ-NENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRN 301 (1355)
Q Consensus 227 ~i~~~l~~~~----~~-~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~ 301 (1355)
.++..+.... ++ +.-.....+.+...+.+ .+..+|+|+..+...+... ..+.+-|..|||.
T Consensus 95 ~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~-~~~~~~l~~~~~~~~~~~~-------------l~~~~li~at~~~ 160 (328)
T PRK00080 95 AILTNLEEGDVLFIDEIHRLSPVVEEILYPAMED-FRLDIMIGKGPAARSIRLD-------------LPPFTLIGATTRA 160 (328)
T ss_pred HHHHhcccCCEEEEecHhhcchHHHHHHHHHHHh-cceeeeeccCccccceeec-------------CCCceEEeecCCc
Confidence 3333322110 00 00001112223333332 4555666655443322211 1234556777775
Q ss_pred hhhhhh-cCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHhcCChHHHHHHHH
Q 000679 302 RDVLCN-DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANALKNKRLYVWNDSLE 380 (1355)
Q Consensus 302 ~~v~~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~w~~~l~ 380 (1355)
..+... .......+++++++.++..+++.+.++..... --.+.+..|++.|+|.|-.+..+...+. .|....
T Consensus 161 ~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~-~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~- 233 (328)
T PRK00080 161 GLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVE-IDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVK- 233 (328)
T ss_pred ccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHc-
Confidence 543321 11123578999999999999999888542221 2245688999999999965444443321 121110
Q ss_pred HHhcccccccccchhhhhhhhhhccccCCchhHHHHHH-HhcccCCCCccChHHHHHHHhhcCCCCCCcchHHHHHHHHH
Q 000679 381 RLRNSTSRQIHGMEENVYSSIELSYSFLKSEEEKSMFR-LCALRKDGSPIPIDDLMRYGIGLGLFSNVRTSEAARNRVYT 459 (1355)
Q Consensus 381 ~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~-~~s~fp~~~~i~~~~l~~~w~a~g~~~~~~~~~~~~~~~~~ 459 (1355)
....-. ...-......+...|..|++. .+..+. ....|+.+ .+..+.+.... | . +.+.++ +
T Consensus 234 ---~~~~I~-~~~v~~~l~~~~~~~~~l~~~-~~~~l~~~~~~~~~~-~~~~~~~a~~l---g--~---~~~~~~----~ 295 (328)
T PRK00080 234 ---GDGVIT-KEIADKALDMLGVDELGLDEM-DRKYLRTIIEKFGGG-PVGLDTLAAAL---G--E---ERDTIE----D 295 (328)
T ss_pred ---CCCCCC-HHHHHHHHHHhCCCcCCCCHH-HHHHHHHHHHHcCCC-ceeHHHHHHHH---C--C---CcchHH----H
Confidence 000000 011112334566777888877 455554 66667644 56666664333 1 1 112222 2
Q ss_pred HHH-HHHhccceecCCC
Q 000679 460 LVD-NLKASSLLLDGDK 475 (1355)
Q Consensus 460 ~~~-~L~~~~l~~~~~~ 475 (1355)
.++ .|++.+|++....
T Consensus 296 ~~e~~Li~~~li~~~~~ 312 (328)
T PRK00080 296 VYEPYLIQQGFIQRTPR 312 (328)
T ss_pred HhhHHHHHcCCcccCCc
Confidence 355 7888999975543
No 34
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.92 E-value=2.1e-08 Score=114.06 Aligned_cols=275 Identities=15% Similarity=0.114 Sum_probs=149.6
Q ss_pred cccchhHHHHHHHHHHhh-----cCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHH
Q 000679 156 EQFDSRMKIFQNIMEVLK-----DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSS 230 (1355)
Q Consensus 156 ~~~~gr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 230 (1355)
.+|+|++..++++..++. ......+.++|++|+|||+||+.+++..... + ..+..+......++. ..+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~l~-~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGDLA-AILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchhHH-HHHH
Confidence 468999999999988886 2335568899999999999999999986422 2 122221111222222 2222
Q ss_pred hhcccc----cc-CCCHHHHHHHHHHHHhcCCeEEEEEeCccccccccccCCCCCCccccCCCCCCCcEEEEEeCchhhh
Q 000679 231 DLELEF----KQ-NENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVL 305 (1355)
Q Consensus 231 ~l~~~~----~~-~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~ 305 (1355)
.++... ++ +.-.....+.+...+.+ .+..+|+|+..+...|... ..+.+-|.+||+...+.
T Consensus 78 ~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~-~~~~~v~~~~~~~~~~~~~-------------~~~~~li~~t~~~~~l~ 143 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLSPAVEELLYPAMED-FRLDIVIGKGPSARSVRLD-------------LPPFTLVGATTRAGMLT 143 (305)
T ss_pred hcccCCEEEEehHhhhCHHHHHHhhHHHhh-hheeeeeccCccccceeec-------------CCCeEEEEecCCccccC
Confidence 222111 00 00011122334444443 5566777766555444321 22355677777775443
Q ss_pred hhc-CCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 000679 306 CND-MNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANALKNKRLYVWNDSLERLRN 384 (1355)
Q Consensus 306 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~w~~~l~~l~~ 384 (1355)
... ......+++++++.++..+++.+.++.... .--.+.+..|++.|+|.|-.+..++..+ |.... ...
T Consensus 144 ~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~-~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~--~~~ 213 (305)
T TIGR00635 144 SPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV-EIEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQ--VRG 213 (305)
T ss_pred HHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHH--HcC
Confidence 211 112457899999999999999988853222 1224567889999999996655444332 11100 000
Q ss_pred ccccccccchhhhhhhhhhccccCCchhHHHHHH-HhcccCCCCccChHHHHHHHhhcCCCCCCcchHHHHHHHHHHHH-
Q 000679 385 STSRQIHGMEENVYSSIELSYSFLKSEEEKSMFR-LCALRKDGSPIPIDDLMRYGIGLGLFSNVRTSEAARNRVYTLVD- 462 (1355)
Q Consensus 385 ~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~-~~s~fp~~~~i~~~~l~~~w~a~g~~~~~~~~~~~~~~~~~~~~- 462 (1355)
..... ...-......+...|..++++ .+..+. ..+.++ +..+..+.+.... |. + .......++
T Consensus 214 ~~~it-~~~v~~~l~~l~~~~~~l~~~-~~~~L~al~~~~~-~~~~~~~~ia~~l---g~-----~----~~~~~~~~e~ 278 (305)
T TIGR00635 214 QKIIN-RDIALKALEMLMIDELGLDEI-DRKLLSVLIEQFQ-GGPVGLKTLAAAL---GE-----D----ADTIEDVYEP 278 (305)
T ss_pred CCCcC-HHHHHHHHHHhCCCCCCCCHH-HHHHHHHHHHHhC-CCcccHHHHHHHh---CC-----C----cchHHHhhhH
Confidence 00000 001111222356678888877 455554 556665 3356655554332 11 1 112233467
Q ss_pred HHHhccceecCCC
Q 000679 463 NLKASSLLLDGDK 475 (1355)
Q Consensus 463 ~L~~~~l~~~~~~ 475 (1355)
.|++++|+.....
T Consensus 279 ~Li~~~li~~~~~ 291 (305)
T TIGR00635 279 YLLQIGFLQRTPR 291 (305)
T ss_pred HHHHcCCcccCCc
Confidence 5999999975443
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.73 E-value=1e-08 Score=102.30 Aligned_cols=79 Identities=23% Similarity=0.291 Sum_probs=18.8
Q ss_pred CCCcceEEEecCCCccccCcccc-cccCCcEEEecCCCCCCccccccccccceeecccCCCCccchhh-hccccCcEEec
Q 000679 558 GMNELRVVHFTRTCFLSLPSSLV-CLISLRTLSLEGCQVGDVAIVGQLKKLEILSFRNSDIQQLPREI-GQLVQLRLLDL 635 (1355)
Q Consensus 558 ~l~~Lr~L~L~~~~~~~lp~~i~-~L~~Lr~L~L~~~~i~~p~~i~~L~~L~~L~L~~~~l~~lP~~i-~~L~~L~~L~l 635 (1355)
+...+|.|+|.++.|+.+. .++ .+.+|+.|++++|.|+..+.+..|.+|++|++++|.|+.++..+ ..+++|++|++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 3345566666666665543 243 35566666666666665555555666666666666665555444 24556666665
Q ss_pred cC
Q 000679 636 RN 637 (1355)
Q Consensus 636 ~~ 637 (1355)
++
T Consensus 96 ~~ 97 (175)
T PF14580_consen 96 SN 97 (175)
T ss_dssp TT
T ss_pred cC
Confidence 55
No 36
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.70 E-value=2e-06 Score=102.72 Aligned_cols=205 Identities=15% Similarity=0.171 Sum_probs=121.1
Q ss_pred cccchhHHHHHHHHHHhhc-----CCceEEEEEecCCCcHHHHHHHHHHHHhhh---cCCC--EEEEEEeCCCCCHHHHH
Q 000679 156 EQFDSRMKIFQNIMEVLKD-----TNVGMIGVYGVNGVGKTTLVKQIAMQVIED---KLFD--KVVFVEVTQTPDLQTIQ 225 (1355)
Q Consensus 156 ~~~~gr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~--~~~wv~~s~~~~~~~~~ 225 (1355)
..+.||++++++|...|.. ....++.|+|++|+|||+.++.|.++.... .... .+++|+.....+...++
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 3477999999999988862 233577899999999999999999876431 1222 35677777777888899
Q ss_pred HHHHHhhcccccc-CCCHHHHHHHHHHHHhc-C-CeEEEEEeCcccccc-ccc-cCCCCCCccccCCCCCCCcEEEE--E
Q 000679 226 NKLSSDLELEFKQ-NENVFQRAEKLRQRLKN-V-KRVLVILDNIWKLLN-LDA-VGIPFGDVKKERNDDRSRCTVLL--T 298 (1355)
Q Consensus 226 ~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~~-~-k~~LlvlDdv~~~~~-~~~-~~~~~~~~~~~~~~~~~~s~ilv--T 298 (1355)
..|++++...... .....+....+...+.. . ...+||||+|+.... -+. +...+.. ....+++|+| +
T Consensus 835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~------~~~s~SKLiLIGI 908 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDW------PTKINSKLVLIAI 908 (1164)
T ss_pred HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHH------hhccCCeEEEEEe
Confidence 9999888443322 12233455555555432 1 345899999986531 011 1100100 0223455544 3
Q ss_pred eCchhhh-------hhcCCCcceEecCCCCHHHHHHHHHHHhCCC---CCCcchHHHHHHHHHHhCCChHHHHHHHHHH
Q 000679 299 SRNRDVL-------CNDMNSQKFFLIEVLSYEEAWCLFEKIVGDS---AKASDFRVIADEIVRRCGGLPVAIKTIANAL 367 (1355)
Q Consensus 299 tR~~~v~-------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~---~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 367 (1355)
|...... ...+. ...+..+|.+.++-.+++..++... ..+..++-+|+.++..-|-.=.||.++-.+.
T Consensus 909 SNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 909 SNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred cCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 3322111 10111 2346779999999999999988532 2223334444444444455556666654444
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.70 E-value=2.7e-09 Score=109.05 Aligned_cols=136 Identities=16% Similarity=0.176 Sum_probs=116.8
Q ss_pred CCCcceEEEecCCCccccCcccccccCCcEEEecCCCCCCccccccccccceeecccCCCCccchhhhccccCcEEeccC
Q 000679 558 GMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGDVAIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRN 637 (1355)
Q Consensus 558 ~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~p~~i~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~ 637 (1355)
.-+.|..|||++|.|+.+..++.-++.+|+|++++|.+....++..|.+|+.|||++|.+.++-..-.+|.|.+.|.+++
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 34678999999999999999999999999999999999997779999999999999998888876667899999999999
Q ss_pred cchhhccchhHHhhhccccccccCCCccccccccCCCccchhhhcCCCCCCeEEEEeccccCCChh
Q 000679 638 CRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTLEIHIRDARIMPQD 703 (1355)
Q Consensus 638 ~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~ 703 (1355)
+.+..+.. +++|-+|..|++.+|.+. .-.....+|+|+-|+.+.+.+|....++..
T Consensus 362 -N~iE~LSG--L~KLYSLvnLDl~~N~Ie-------~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 362 -NKIETLSG--LRKLYSLVNLDLSSNQIE-------ELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred -hhHhhhhh--hHhhhhheeccccccchh-------hHHHhcccccccHHHHHhhcCCCccccchH
Confidence 56877754 999999999999999774 334466788999999999998877766543
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.69 E-value=1.6e-09 Score=120.76 Aligned_cols=144 Identities=23% Similarity=0.359 Sum_probs=102.9
Q ss_pred CCcccChhhhcCCCcceEEEecCCCccccCcccccccCCcEEEecCCCCCC-ccccccccccceeecccCCCCccchhhh
Q 000679 547 SSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGD-VAIVGQLKKLEILSFRNSDIQQLPREIG 625 (1355)
Q Consensus 547 ~~~~lp~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~-p~~i~~L~~L~~L~L~~~~l~~lP~~i~ 625 (1355)
....+|..+ ..+-.|..|.|..|.+..+|..+++|..|.||+|+.|+++. |..++.|. |+.|-+++|+++.+|..|+
T Consensus 86 R~~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig 163 (722)
T KOG0532|consen 86 RFSELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIG 163 (722)
T ss_pred ccccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccc
Confidence 455666664 66677777777777777777777888888888888877777 77776665 7777777777788887777
Q ss_pred ccccCcEEeccCcchhhccchhHHhhhccccccccCCCccccccccCCCccchhhhcCCCCCCeEEEEeccccCCChhh
Q 000679 626 QLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTLEIHIRDARIMPQDL 704 (1355)
Q Consensus 626 ~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~ 704 (1355)
.+..|.+||.+.| .+..+|.. ++.|.+|+.|.+..|... ..+.++..| .|.+|++++|+...+|..+
T Consensus 164 ~~~tl~~ld~s~n-ei~slpsq-l~~l~slr~l~vrRn~l~---------~lp~El~~L-pLi~lDfScNkis~iPv~f 230 (722)
T KOG0532|consen 164 LLPTLAHLDVSKN-EIQSLPSQ-LGYLTSLRDLNVRRNHLE---------DLPEELCSL-PLIRLDFSCNKISYLPVDF 230 (722)
T ss_pred cchhHHHhhhhhh-hhhhchHH-hhhHHHHHHHHHhhhhhh---------hCCHHHhCC-ceeeeecccCceeecchhh
Confidence 7777777777774 46667766 777778887777666552 345666644 3677777777777766653
No 39
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.67 E-value=4.8e-09 Score=121.01 Aligned_cols=137 Identities=20% Similarity=0.196 Sum_probs=81.4
Q ss_pred hhcCCCcceEEEecCCCcc-----ccCcccccccCCcEEEecCCCCCC--------ccccccccccceeecccCCCC-cc
Q 000679 555 FFEGMNELRVVHFTRTCFL-----SLPSSLVCLISLRTLSLEGCQVGD--------VAIVGQLKKLEILSFRNSDIQ-QL 620 (1355)
Q Consensus 555 ~~~~l~~Lr~L~L~~~~~~-----~lp~~i~~L~~Lr~L~L~~~~i~~--------p~~i~~L~~L~~L~L~~~~l~-~l 620 (1355)
+|..+..|++|+++++.+. .++..+...+.|++|+++++.+.. +..+.++.+|++|++++|.+. ..
T Consensus 18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 4566677888888887763 255566666778888887776651 244566777777777777665 34
Q ss_pred chhhhcccc---CcEEeccCcchhh----ccchhHHhhh-ccccccccCCCccccccccCCCccchhhhcCCCCCCeEEE
Q 000679 621 PREIGQLVQ---LRLLDLRNCRRLQ----AIAPNVISKL-SRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTLEI 692 (1355)
Q Consensus 621 P~~i~~L~~---L~~L~l~~~~~l~----~~p~~~i~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l 692 (1355)
+..+..+.+ |++|++++|.... .+... +..+ .+|++|++++|.+... ........+..+++|++|++
T Consensus 98 ~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~----~~~~~~~~~~~~~~L~~L~l 172 (319)
T cd00116 98 CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGA----SCEALAKALRANRDLKELNL 172 (319)
T ss_pred HHHHHHHhccCcccEEEeeCCccchHHHHHHHHH-HHhCCCCceEEEcCCCcCCch----HHHHHHHHHHhCCCcCEEEC
Confidence 444555554 7777777754221 11112 4455 6777777777765310 01122344556666777776
Q ss_pred Eecc
Q 000679 693 HIRD 696 (1355)
Q Consensus 693 ~~~~ 696 (1355)
..+.
T Consensus 173 ~~n~ 176 (319)
T cd00116 173 ANNG 176 (319)
T ss_pred cCCC
Confidence 6443
No 40
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.66 E-value=1.8e-08 Score=100.65 Aligned_cols=132 Identities=23% Similarity=0.248 Sum_probs=39.3
Q ss_pred CCCCCCccCCCceEEEEeeccCCCCcccChhhhcCCCcceEEEecCCCccccCcccccccCCcEEEecCCCCCC-cccc-
Q 000679 524 IDELPERLECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGD-VAIV- 601 (1355)
Q Consensus 524 ~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~-p~~i- 601 (1355)
+...+......++|.|.+.++ ....+. .+-..+.+|++||+++|.|.+++ .+..+++|+.|++++|.|+. .+.+
T Consensus 9 i~~~~~~~n~~~~~~L~L~~n--~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~ 84 (175)
T PF14580_consen 9 IEQIAQYNNPVKLRELNLRGN--QISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLD 84 (175)
T ss_dssp ------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHH
T ss_pred ccccccccccccccccccccc--cccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchH
Confidence 344444455556677777666 333222 22124567777777777777665 36667777777777777766 3334
Q ss_pred ccccccceeecccCCCCccc--hhhhccccCcEEeccCcchhhccc---hhHHhhhcccccccc
Q 000679 602 GQLKKLEILSFRNSDIQQLP--REIGQLVQLRLLDLRNCRRLQAIA---PNVISKLSRLEELYM 660 (1355)
Q Consensus 602 ~~L~~L~~L~L~~~~l~~lP--~~i~~L~~L~~L~l~~~~~l~~~p---~~~i~~L~~L~~L~l 660 (1355)
..+++|++|++++|.|..+- ..+..+++|++|++.+|. +...+ ..++..+++|+.|+.
T Consensus 85 ~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 85 KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETT
T ss_pred HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCC
Confidence 35677777777777665443 234566677777776643 32222 123555666666653
No 41
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.62 E-value=3.7e-09 Score=118.02 Aligned_cols=172 Identities=22% Similarity=0.346 Sum_probs=142.7
Q ss_pred CCCCCCCCCCCcc-CCCceEEEEeeccCCCCcccChhhhcCCCcceEEEecCCCccccCcccccccCCcEEEecCCCCCC
Q 000679 519 LPNRDIDELPERL-ECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGD 597 (1355)
Q Consensus 519 l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~ 597 (1355)
++.+.+.++|... .+-.|.++.+..+ ....+|..+ ..+..|.+|||+.|.+..+|..++.|+ |++|-+++|+++.
T Consensus 82 lsrNR~~elp~~~~~f~~Le~liLy~n--~~r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~ 157 (722)
T KOG0532|consen 82 LSRNRFSELPEEACAFVSLESLILYHN--CIRTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTS 157 (722)
T ss_pred ccccccccCchHHHHHHHHHHHHHHhc--cceecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCcccc
Confidence 3344555565433 3455666666665 555677776 889999999999999999999998775 9999999999998
Q ss_pred -ccccccccccceeecccCCCCccchhhhccccCcEEeccCcchhhccchhHHhhhccccccccCCCccccccccCCCcc
Q 000679 598 -VAIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNA 676 (1355)
Q Consensus 598 -p~~i~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~ 676 (1355)
|..|+.+.+|..||.+.|.+..+|..++.|.+|+.|+++. +.+..+|+. +. --.|..|+++.|.+. .
T Consensus 158 lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~E-l~-~LpLi~lDfScNkis---------~ 225 (722)
T KOG0532|consen 158 LPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEE-LC-SLPLIRLDFSCNKIS---------Y 225 (722)
T ss_pred CCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHH-Hh-CCceeeeecccCcee---------e
Confidence 9999999999999999999999999999999999999999 568889988 66 445889999888764 4
Q ss_pred chhhhcCCCCCCeEEEEeccccCCChhhhh
Q 000679 677 SLVELKGLSKLTTLEIHIRDARIMPQDLIS 706 (1355)
Q Consensus 677 ~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~ 706 (1355)
.+..+.+|++|+.|-+.+|....-|..+..
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~ 255 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQSPPAQICE 255 (722)
T ss_pred cchhhhhhhhheeeeeccCCCCCChHHHHh
Confidence 567899999999999999999988888764
No 42
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.61 E-value=8.2e-09 Score=119.08 Aligned_cols=128 Identities=20% Similarity=0.190 Sum_probs=81.5
Q ss_pred EEecCCCcc--ccCcccccccCCcEEEecCCCCCC------ccccccccccceeecccCCCCc-------cchhhhcccc
Q 000679 565 VHFTRTCFL--SLPSSLVCLISLRTLSLEGCQVGD------VAIVGQLKKLEILSFRNSDIQQ-------LPREIGQLVQ 629 (1355)
Q Consensus 565 L~L~~~~~~--~lp~~i~~L~~Lr~L~L~~~~i~~------p~~i~~L~~L~~L~L~~~~l~~-------lP~~i~~L~~ 629 (1355)
|+|.++.+. ..+.-+..+.+|+.|++++|.++. +..+...++|++|+++++.+.. ++..+.++.+
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 566666654 245556777889999999998754 3455667778899998876553 3445667788
Q ss_pred CcEEeccCcchhhccchhHHhhhcc---ccccccCCCccccccccCCCccchhhhcCC-CCCCeEEEEeccc
Q 000679 630 LRLLDLRNCRRLQAIAPNVISKLSR---LEELYMGDSFSQWEKVEGGSNASLVELKGL-SKLTTLEIHIRDA 697 (1355)
Q Consensus 630 L~~L~l~~~~~l~~~p~~~i~~L~~---L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L-~~L~~L~l~~~~~ 697 (1355)
|+.|++++|......+.. +..+.+ |++|++++|.+... ........+..+ ++|+.|++..+..
T Consensus 83 L~~L~l~~~~~~~~~~~~-~~~l~~~~~L~~L~ls~~~~~~~----~~~~l~~~l~~~~~~L~~L~L~~n~l 149 (319)
T cd00116 83 LQELDLSDNALGPDGCGV-LESLLRSSSLQELKLNNNGLGDR----GLRLLAKGLKDLPPALEKLVLGRNRL 149 (319)
T ss_pred eeEEEccCCCCChhHHHH-HHHHhccCcccEEEeeCCccchH----HHHHHHHHHHhCCCCceEEEcCCCcC
Confidence 888888886543333333 666665 88888877755210 011122345555 6777777775543
No 43
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.57 E-value=2e-07 Score=102.15 Aligned_cols=290 Identities=24% Similarity=0.253 Sum_probs=189.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCC-CEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHh
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLF-DKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK 254 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 254 (1355)
..+.+.++|.|||||||++-.+.. .+ .-| +.+.++....-.+...+.......++..... -+..+..+..++.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~--~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AA--SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hh--hhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHHh
Confidence 357899999999999999999998 43 346 6677787777777777777777777765433 1223334555556
Q ss_pred cCCeEEEEEeCccccc-cccccCCCCCCccccCCCCCCCcEEEEEeCchhhhhhcCCCcceEecCCCCHH-HHHHHHHHH
Q 000679 255 NVKRVLVILDNIWKLL-NLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCNDMNSQKFFLIEVLSYE-EAWCLFEKI 332 (1355)
Q Consensus 255 ~~k~~LlvlDdv~~~~-~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~~~~~~~~~~l~~L~~~-~~~~lf~~~ 332 (1355)
. +|.++|+||-.+.. +-..+...+-. +...-.|+.|+|.... ......+.+.+|+.- ++.++|...
T Consensus 87 ~-rr~llvldncehl~~~~a~~i~all~-------~~~~~~~~atsre~~l----~~ge~~~~~~~L~~~d~a~~lf~~r 154 (414)
T COG3903 87 D-RRALLVLDNCEHLLDACAALIVALLG-------ACPRLAILATSREAIL----VAGEVHRRVPSLSLFDEAIELFVCR 154 (414)
T ss_pred h-hhHHHHhcCcHHHHHHHHHHHHHHHc-------cchhhhhHHHhHhhhc----ccccccccCCccccCCchhHHHHHH
Confidence 4 99999999976652 11222122211 5556678889987642 445567778888765 799999877
Q ss_pred hCCC----CCCcchHHHHHHHHHHhCCChHHHHHHHHHHhcCChHHHHHHHH----HHhcccccccccchhhhhhhhhhc
Q 000679 333 VGDS----AKASDFRVIADEIVRRCGGLPVAIKTIANALKNKRLYVWNDSLE----RLRNSTSRQIHGMEENVYSSIELS 404 (1355)
Q Consensus 333 ~~~~----~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~w~~~l~----~l~~~~~~~~~~~~~~i~~~l~~s 404 (1355)
+... .-...-.....+|.++..|.|++|...++..+.-...+....++ .+... ......-.....+.+.+|
T Consensus 155 a~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws 233 (414)
T COG3903 155 AVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWS 233 (414)
T ss_pred HHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhh
Confidence 7221 11223356688999999999999999999998875544433332 22221 111112234577899999
Q ss_pred cccCCchhHHHHHHHhcccCCCCccChHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHhccceecCCCCc---cchh
Q 000679 405 YSFLKSEEEKSMFRLCALRKDGSPIPIDDLMRYGIGLGLFSNVRTSEAARNRVYTLVDNLKASSLLLDGDKDE---VKLH 481 (1355)
Q Consensus 405 y~~L~~~~~k~cf~~~s~fp~~~~i~~~~l~~~w~a~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~---~~mh 481 (1355)
|.-|... .+..|.-++.|...+.-. ...|.+-|-.. ....-.....+..+++.+++.-.+... |+.-
T Consensus 234 ~~lLtgw-e~~~~~rLa~~~g~f~~~----l~~~~a~g~~~-----~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~ 303 (414)
T COG3903 234 YALLTGW-ERALFGRLAVFVGGFDLG----LALAVAAGADV-----DVPRYLVLLALTLLVDKSLVVALDLLGRARYRLL 303 (414)
T ss_pred hHhhhhH-HHHHhcchhhhhhhhccc----HHHHHhcCCcc-----ccchHHHHHHHHHHhhccchhhhhhhhHHHHHHH
Confidence 9999988 688999999998444333 33455444211 011222234466788888875443222 8888
Q ss_pred hHHHHHHHHHhcc
Q 000679 482 DIIYAVAVSIARD 494 (1355)
Q Consensus 482 ~lv~~~~~~~~~~ 494 (1355)
+-+|.|+..+..+
T Consensus 304 eT~r~YalaeL~r 316 (414)
T COG3903 304 ETGRRYALAELHR 316 (414)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888877744
No 44
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.56 E-value=4.7e-07 Score=106.62 Aligned_cols=178 Identities=17% Similarity=0.199 Sum_probs=107.5
Q ss_pred CCccccchhHHHHHH---HHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHH
Q 000679 153 TAYEQFDSRMKIFQN---IMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLS 229 (1355)
Q Consensus 153 ~~~~~~~gr~~~~~~---l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 229 (1355)
.....|+|++..+.. +..++.......+.++|++|+||||+|+.+++... .. |+.++....-..-.+.+.
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~--~~-----~~~l~a~~~~~~~ir~ii 81 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD--AP-----FEALSAVTSGVKDLREVI 81 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC--CC-----EEEEecccccHHHHHHHH
Confidence 344568898887666 77777777777889999999999999999998763 22 233332211111111111
Q ss_pred HhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCccccc--cccccCCCCCCccccCCCCCCCcEEEE--EeCchhhh
Q 000679 230 SDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLL--TSRNRDVL 305 (1355)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilv--TtR~~~v~ 305 (1355)
.........+++.+|++|+++... +.+.+...+ ..|..++| ||.+....
T Consensus 82 -----------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~l----------e~~~iilI~att~n~~~~ 134 (413)
T PRK13342 82 -----------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHV----------EDGTITLIGATTENPSFE 134 (413)
T ss_pred -----------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHh----------hcCcEEEEEeCCCChhhh
Confidence 112222223578899999998753 333332221 22444444 34443211
Q ss_pred --hhcCCCcceEecCCCCHHHHHHHHHHHhCCC-CCC-cchHHHHHHHHHHhCCChHHHHHHH
Q 000679 306 --CNDMNSQKFFLIEVLSYEEAWCLFEKIVGDS-AKA-SDFRVIADEIVRRCGGLPVAIKTIA 364 (1355)
Q Consensus 306 --~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~-~~~~~~~~~i~~~c~glPLai~~~~ 364 (1355)
.........+.+.+++.++.+.++.+.+... ... .--.+..+.|++.++|.+..+.-+.
T Consensus 135 l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 135 VNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred ccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 1112234689999999999999999876321 111 2235667889999999997664443
No 45
>PRK06893 DNA replication initiation factor; Validated
Probab=98.50 E-value=1.2e-06 Score=93.95 Aligned_cols=154 Identities=13% Similarity=0.189 Sum_probs=93.9
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHh
Q 000679 175 TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK 254 (1355)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 254 (1355)
...+.+.++|++|+|||+||+.+++....+ ...+.|+++.... .. ...+.+.+.
T Consensus 37 ~~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~---~~---------------------~~~~~~~~~ 90 (229)
T PRK06893 37 LQQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQ---YF---------------------SPAVLENLE 90 (229)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhh---hh---------------------hHHHHhhcc
Confidence 344678999999999999999999987543 3345677653110 00 011222232
Q ss_pred cCCeEEEEEeCcccc---ccccc-cCCCCCCccccCCCCCCCcEEEEEeCch----------hhhhhcCCCcceEecCCC
Q 000679 255 NVKRVLVILDNIWKL---LNLDA-VGIPFGDVKKERNDDRSRCTVLLTSRNR----------DVLCNDMNSQKFFLIEVL 320 (1355)
Q Consensus 255 ~~k~~LlvlDdv~~~---~~~~~-~~~~~~~~~~~~~~~~~~s~ilvTtR~~----------~v~~~~~~~~~~~~l~~L 320 (1355)
+.-+||+||+|.. ..|+. +...+.. . ...|..+||+|.+. .+.. .+.....++++++
T Consensus 91 --~~dlLilDDi~~~~~~~~~~~~l~~l~n~----~--~~~~~~illits~~~p~~l~~~~~~L~s-Rl~~g~~~~l~~p 161 (229)
T PRK06893 91 --QQDLVCLDDLQAVIGNEEWELAIFDLFNR----I--KEQGKTLLLISADCSPHALSIKLPDLAS-RLTWGEIYQLNDL 161 (229)
T ss_pred --cCCEEEEeChhhhcCChHHHHHHHHHHHH----H--HHcCCcEEEEeCCCChHHccccchhHHH-HHhcCCeeeCCCC
Confidence 3458999999974 34542 2111111 0 22355565544433 3333 3445678999999
Q ss_pred CHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHH
Q 000679 321 SYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIA 364 (1355)
Q Consensus 321 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 364 (1355)
++++.++++++++.... -.--+++.+-|++++.|-.-++..+-
T Consensus 162 d~e~~~~iL~~~a~~~~-l~l~~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 162 TDEQKIIVLQRNAYQRG-IELSDEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred CHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 99999999998884322 11225667888999887766554443
No 46
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.44 E-value=1.6e-06 Score=94.39 Aligned_cols=233 Identities=17% Similarity=0.237 Sum_probs=130.1
Q ss_pred cCCccccchhHHHH---HHHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCC-HHHHHHH
Q 000679 152 YTAYEQFDSRMKIF---QNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD-LQTIQNK 227 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~ 227 (1355)
|.....++|.+..+ .-|..++..+.+...-.||++|+||||||+.++.... ..| +.+|...+ +.++..
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~--~~f-----~~~sAv~~gvkdlr~- 91 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTN--AAF-----EALSAVTSGVKDLRE- 91 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhC--Cce-----EEeccccccHHHHHH-
Confidence 34444566655433 2344555567788888999999999999999998753 223 33443322 333222
Q ss_pred HHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCcccc--ccccccCCCCCCccccCCCCCCCcEEEE--EeCchh
Q 000679 228 LSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLL--TSRNRD 303 (1355)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~s~ilv--TtR~~~ 303 (1355)
+ ++.-++....|++.+|++|.|..- .+-+.+ .|. -..|.-|+| ||.++.
T Consensus 92 i-----------------~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l-Lp~---------vE~G~iilIGATTENPs 144 (436)
T COG2256 92 I-----------------IEEARKNRLLGRRTILFLDEIHRFNKAQQDAL-LPH---------VENGTIILIGATTENPS 144 (436)
T ss_pred H-----------------HHHHHHHHhcCCceEEEEehhhhcChhhhhhh-hhh---------hcCCeEEEEeccCCCCC
Confidence 2 222233333479999999999765 333333 232 445666666 566653
Q ss_pred hh--hhcCCCcceEecCCCCHHHHHHHHHHHhCC-----CCCCcch-HHHHHHHHHHhCCChHHHHH----HHHHHhcCC
Q 000679 304 VL--CNDMNSQKFFLIEVLSYEEAWCLFEKIVGD-----SAKASDF-RVIADEIVRRCGGLPVAIKT----IANALKNKR 371 (1355)
Q Consensus 304 v~--~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~-----~~~~~~~-~~~~~~i~~~c~glPLai~~----~~~~l~~~~ 371 (1355)
.. ........++++++|+.+|-.+++.+.+.. ......+ ++....+++.++|---++-. +..+-+...
T Consensus 145 F~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~ 224 (436)
T COG2256 145 FELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDE 224 (436)
T ss_pred eeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCc
Confidence 21 212444679999999999999999985521 1111112 44667788888886644322 222222211
Q ss_pred ---hHHHHHHHHHHhcccccc-cccchhhhhhhhhhccccCCchhHHHHHHHhccc
Q 000679 372 ---LYVWNDSLERLRNSTSRQ-IHGMEENVYSSIELSYSFLKSEEEKSMFRLCALR 423 (1355)
Q Consensus 372 ---~~~w~~~l~~l~~~~~~~-~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~f 423 (1355)
.+..++.+.+- +...+ ..+..-++.+++.-|...-.++ ...+.++=++
T Consensus 225 ~~~~~~l~~~l~~~--~~~~Dk~gD~hYdliSA~hKSvRGSD~d--AALyylARmi 276 (436)
T COG2256 225 VLILELLEEILQRR--SARFDKDGDAHYDLISALHKSVRGSDPD--AALYYLARMI 276 (436)
T ss_pred ccCHHHHHHHHhhh--hhccCCCcchHHHHHHHHHHhhccCCcC--HHHHHHHHHH
Confidence 23333333321 11111 1233346778888888777665 2334444444
No 47
>PRK04195 replication factor C large subunit; Provisional
Probab=98.42 E-value=1.2e-05 Score=96.87 Aligned_cols=185 Identities=17% Similarity=0.197 Sum_probs=110.8
Q ss_pred cCCccccchhHHHHHHHHHHhhc----CCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHH
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLKD----TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNK 227 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 227 (1355)
|.....++|+++.++.+.+|+.. ...+.+.|+|++|+||||+|+.++++.. |+ ++-+++++..+...+ ..
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~~i-~~ 83 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTADVI-ER 83 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHHHH-HH
Confidence 44556788999999999999862 2267899999999999999999999863 33 333455544333322 22
Q ss_pred HHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCcccccc------ccccCCCCCCccccCCCCCCCcEEEEEeCc
Q 000679 228 LSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLN------LDAVGIPFGDVKKERNDDRSRCTVLLTSRN 301 (1355)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~------~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~ 301 (1355)
++....... .+...++-+||+|+++.... +..+...+ ...+..||+|+.+
T Consensus 84 ~i~~~~~~~---------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l---------~~~~~~iIli~n~ 139 (482)
T PRK04195 84 VAGEAATSG---------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELI---------KKAKQPIILTAND 139 (482)
T ss_pred HHHHhhccC---------------cccCCCCeEEEEecCcccccccchhHHHHHHHHH---------HcCCCCEEEeccC
Confidence 222211100 01102678999999987532 22222111 1233446666643
Q ss_pred h-hhhh-hcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHH
Q 000679 302 R-DVLC-NDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANAL 367 (1355)
Q Consensus 302 ~-~v~~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 367 (1355)
. .... ........+.+.+++.++....+.+.+......- -.++...|++.++|-.-.+......+
T Consensus 140 ~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i-~~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 140 PYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIEC-DDEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred ccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3 1111 1122346789999999999988888773222111 14567889999999776554433333
No 48
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.37 E-value=8.5e-07 Score=99.38 Aligned_cols=62 Identities=19% Similarity=0.289 Sum_probs=32.3
Q ss_pred CCCCceEEEEccccchhhhhccccccccccceeeccccccccccCCCcceEeeCCccccCCCccEEEEecCCCccccc
Q 000679 1064 GTPNLMTLRVSYCHNIEEIIRHVGEDVKENRITFNQLKNLELDDLPSLTSFCLGNCTLEFPSLERVFVRNCRNMKTFS 1141 (1355)
Q Consensus 1064 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~l~sL~~L~i~~c~~l~~lp 1141 (1355)
.+..++.|+|++| .++.+| . ..++|+.|.+.+|.+|+.++-. ..++|++|++++|.++..+|
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP-~----------LP~sLtsL~Lsnc~nLtsLP~~----LP~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLP-V----------LPNELTEITIENCNNLTTLPGS----IPEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HhcCCCEEEeCCC-CCcccC-C----------CCCCCcEEEccCCCCcccCCch----hhhhhhheEccCcccccccc
Confidence 3466667777766 555553 1 1234555566555555554421 12355566665555555444
No 49
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.36 E-value=1.1e-05 Score=96.45 Aligned_cols=188 Identities=13% Similarity=0.159 Sum_probs=114.8
Q ss_pred cCCccccchhHHHHHHHHHHhhcCCc-eEEEEEecCCCcHHHHHHHHHHHHhhhc-------------------CCCEEE
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDK-------------------LFDKVV 211 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~ 211 (1355)
|....+++|.+..++.|.+++..++. ..+.++|..|+||||+|+.+.+...... .|..++
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dvi 91 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYV 91 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEE
Confidence 34556789999999999999886553 4667999999999999999988763211 121233
Q ss_pred EEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCccccc--cccccCCCCCCccccCCCC
Q 000679 212 FVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDD 289 (1355)
Q Consensus 212 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~ 289 (1355)
+++.+....++++. ++++.. ...-..++.-++|||+++... .|+.+...+-. -
T Consensus 92 EIDAas~rgVDdIR-eLIe~a-----------------~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEE-------P 146 (830)
T PRK07003 92 EMDAASNRGVDEMA-ALLERA-----------------VYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEE-------P 146 (830)
T ss_pred EecccccccHHHHH-HHHHHH-----------------HhccccCCceEEEEeChhhCCHHHHHHHHHHHHh-------c
Confidence 33332222222211 111111 100112355688899998774 36655443333 3
Q ss_pred CCCcEEEEEeCchh-hhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh-HHHHHHHH
Q 000679 290 RSRCTVLLTSRNRD-VLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLP-VAIKTIAN 365 (1355)
Q Consensus 290 ~~~s~ilvTtR~~~-v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~ 365 (1355)
....++|+||.+.. +..........+.++.++.++..+.+.+.++.+... --.+..+.|++.++|.. -|+.++-.
T Consensus 147 P~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~-id~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 147 PPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA-FEPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred CCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45677777777653 322122334689999999999999998877433221 12455778999998865 56665433
No 50
>PF13173 AAA_14: AAA domain
Probab=98.35 E-value=7.2e-07 Score=86.10 Aligned_cols=121 Identities=21% Similarity=0.258 Sum_probs=80.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcC
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNV 256 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (1355)
.+++.|.|+.|+||||++++++.+.. ....++|++..+........ .+..+.+.+....
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~-----------------~~~~~~~~~~~~~- 60 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD-----------------PDLLEYFLELIKP- 60 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh-----------------hhhHHHHHHhhcc-
Confidence 46899999999999999999998874 34567777665432211000 0012233333332
Q ss_pred CeEEEEEeCccccccccccCCCCCCccccCCCCCCCcEEEEEeCchhhhhh-----cCCCcceEecCCCCHHHH
Q 000679 257 KRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCN-----DMNSQKFFLIEVLSYEEA 325 (1355)
Q Consensus 257 k~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~-----~~~~~~~~~l~~L~~~~~ 325 (1355)
++.++++|+|....+|......+.+ .....+|++|+........ ..+....+++.||+..|.
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d-------~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVD-------NGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHH-------hccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 6788999999999888876555544 4567899999988765521 122345789999998763
No 51
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.32 E-value=1.7e-05 Score=100.82 Aligned_cols=269 Identities=13% Similarity=0.150 Sum_probs=154.2
Q ss_pred cchhHHHHHHHHHHhh---cCCceEEEEEecCCCcHHHHHHHHHHHHhhh-cCCCEEEEEEeCCCCC---HHHHHHHHHH
Q 000679 158 FDSRMKIFQNIMEVLK---DTNVGMIGVYGVNGVGKTTLVKQIAMQVIED-KLFDKVVFVEVTQTPD---LQTIQNKLSS 230 (1355)
Q Consensus 158 ~~gr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~s~~~~---~~~~~~~i~~ 230 (1355)
++||+.+++.|...+. .+...++.+.|..|||||+++++|......+ ..|-.-.+-....... ..+.+++++.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 5799999999998887 4556799999999999999999999987543 2221111111112211 2233334433
Q ss_pred hh-------------------ccccccC----------------------CCHHH-----HHHHHHHHHhcCCeEEEEEe
Q 000679 231 DL-------------------ELEFKQN----------------------ENVFQ-----RAEKLRQRLKNVKRVLVILD 264 (1355)
Q Consensus 231 ~l-------------------~~~~~~~----------------------~~~~~-----~~~~l~~~l~~~k~~LlvlD 264 (1355)
++ +...... ..... ....+.....+.++..+|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 33 1110000 00000 11223333334579999999
Q ss_pred Cccccc-c-ccccCCCCCCccccCCCCCCCcEEEEEeCch-hhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcc
Q 000679 265 NIWKLL-N-LDAVGIPFGDVKKERNDDRSRCTVLLTSRNR-DVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASD 341 (1355)
Q Consensus 265 dv~~~~-~-~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~ 341 (1355)
|+.-.+ . .+-+....... .-.....+-.-.+.|.+.. ............+.+.||+..+...+.....+.....
T Consensus 162 DlhWaD~~SL~lL~~lm~~~-~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~-- 238 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRI-AIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLL-- 238 (849)
T ss_pred cccccChhHHHHHHHHHHhc-chhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccc--
Confidence 994221 1 11110000000 0000001111233333433 1122123445789999999999999999988663222
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHhcC-------ChHHHHHHHHHHhcccccccccchhhhhhhhhhccccCCchhHH
Q 000679 342 FRVIADEIVRRCGGLPVAIKTIANALKNK-------RLYVWNDSLERLRNSTSRQIHGMEENVYSSIELSYSFLKSEEEK 414 (1355)
Q Consensus 342 ~~~~~~~i~~~c~glPLai~~~~~~l~~~-------~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k 414 (1355)
..+....|+++..|+|+-+.-+-..+... +...|..-...+ ......+. +...+..-.+.||.. .+
T Consensus 239 ~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i-----~~~~~~~~-vv~~l~~rl~kL~~~-t~ 311 (849)
T COG3899 239 PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL-----GILATTDA-VVEFLAARLQKLPGT-TR 311 (849)
T ss_pred cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc-----CCchhhHH-HHHHHHHHHhcCCHH-HH
Confidence 24557899999999999998887777553 334455433322 12222233 666788889999998 79
Q ss_pred HHHHHhcccCCCCccChHHHHHHH
Q 000679 415 SMFRLCALRKDGSPIPIDDLMRYG 438 (1355)
Q Consensus 415 ~cf~~~s~fp~~~~i~~~~l~~~w 438 (1355)
+.....|++- -.|+.+.|...|
T Consensus 312 ~Vl~~AA~iG--~~F~l~~La~l~ 333 (849)
T COG3899 312 EVLKAAACIG--NRFDLDTLAALA 333 (849)
T ss_pred HHHHHHHHhC--ccCCHHHHHHHH
Confidence 9999999987 566676676555
No 52
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.31 E-value=1.8e-06 Score=84.31 Aligned_cols=117 Identities=22% Similarity=0.294 Sum_probs=82.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhh---cCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHH
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIED---KLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQR 252 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 252 (1355)
+.+++.|+|.+|+|||++++.+.++.... ..-..++|+.+....+...+...|+.+++.......+..+....+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 34789999999999999999999986421 113457799998888999999999999988766655677778888888
Q ss_pred HhcCCeEEEEEeCcccc-c--cccccCCCCCCccccCCCCCCCcEEEEEeCc
Q 000679 253 LKNVKRVLVILDNIWKL-L--NLDAVGIPFGDVKKERNDDRSRCTVLLTSRN 301 (1355)
Q Consensus 253 l~~~k~~LlvlDdv~~~-~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~ 301 (1355)
+.+.+..+||+|+++.. . .++.+. . + ....+.++|+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~----~----l-~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLR----S----L-LNESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHH----H----H-TCSCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHH----H----H-HhCCCCeEEEEECh
Confidence 88766679999999875 2 112221 1 1 13566778777665
No 53
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=6.4e-05 Score=85.54 Aligned_cols=199 Identities=18% Similarity=0.227 Sum_probs=129.2
Q ss_pred cchhHHHHHHHHHHhh----cCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhc
Q 000679 158 FDSRMKIFQNIMEVLK----DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLE 233 (1355)
Q Consensus 158 ~~gr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (1355)
+.+|+.+++++...|. +....-+.|+|..|+|||+.++.+....+....=..+++|++-...+...++..|+.+++
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~ 98 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG 98 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC
Confidence 7899999999998876 333444999999999999999999998865422222889999999999999999999997
Q ss_pred cccccCCCHHHHHHHHHHHHhc-CCeEEEEEeCcccccccc--ccCCCCCCccccCCCCCCCcEEEE--EeCchhhh---
Q 000679 234 LEFKQNENVFQRAEKLRQRLKN-VKRVLVILDNIWKLLNLD--AVGIPFGDVKKERNDDRSRCTVLL--TSRNRDVL--- 305 (1355)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~l~~-~k~~LlvlDdv~~~~~~~--~~~~~~~~~~~~~~~~~~~s~ilv--TtR~~~v~--- 305 (1355)
..........+....+.+.+.. ++.+++|||+++....-+ -+..-+.. .....++|++ .+-+....
T Consensus 99 ~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~------~~~~~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 99 KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRA------PGENKVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhh------ccccceeEEEEEEeccHHHHHHh
Confidence 4443335566667777777764 588999999998763332 11111110 0112444433 33333222
Q ss_pred ----hhcCCCcceEecCCCCHHHHHHHHHHHhC----CCCCCcchHHHHHHHHHHhC-CChHHHHHH
Q 000679 306 ----CNDMNSQKFFLIEVLSYEEAWCLFEKIVG----DSAKASDFRVIADEIVRRCG-GLPVAIKTI 363 (1355)
Q Consensus 306 ----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~----~~~~~~~~~~~~~~i~~~c~-glPLai~~~ 363 (1355)
....+. ..+...|-+.+|-.+.+..++. .....++.-+.+..++..-+ -.=.||.++
T Consensus 173 d~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 173 DPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 101222 3478899999999999998882 22333444444444444444 444555554
No 54
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.31 E-value=0.00011 Score=90.25 Aligned_cols=203 Identities=19% Similarity=0.099 Sum_probs=116.8
Q ss_pred CccccchhHHHHHHHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCC---CEEEEEEeCCC---CCHHHHHHH
Q 000679 154 AYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLF---DKVVFVEVTQT---PDLQTIQNK 227 (1355)
Q Consensus 154 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~~---~~~~~~~~~ 227 (1355)
....++|++..+..+.+.+.......+.|+|++|+||||+|+.+++.......+ ...-|+.+... .+...+...
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ 231 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNP 231 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHH
Confidence 344678999999888888766666789999999999999999999876543333 12345555421 122222111
Q ss_pred HH---------------Hhhcccc----------------c-cCCCHHHHHHHHHHHHhcCCeEEEEEeCcccc--cccc
Q 000679 228 LS---------------SDLELEF----------------K-QNENVFQRAEKLRQRLKNVKRVLVILDNIWKL--LNLD 273 (1355)
Q Consensus 228 i~---------------~~l~~~~----------------~-~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~--~~~~ 273 (1355)
++ ...+... + ...-.......+.+.+.+ +++.++-|+.|.. ..|+
T Consensus 232 llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~-~~v~~~~~~~~~~~~~~~~ 310 (615)
T TIGR02903 232 LLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLED-KRVEFSSSYYDPDDPNVPK 310 (615)
T ss_pred hcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhh-CeEEeecceeccCCcccch
Confidence 11 1111100 0 001123345677777775 8888887766654 3577
Q ss_pred ccCCCCCCccccCCCCCCCcEEEE--EeCchhh-hhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 000679 274 AVGIPFGDVKKERNDDRSRCTVLL--TSRNRDV-LCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIV 350 (1355)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~s~ilv--TtR~~~v-~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~ 350 (1355)
.+...+.. ..+...|++ ||++... ..........+.+.+++.+|.+.++++.+...... --.++.+.|+
T Consensus 311 ~ik~~~~~-------~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~-ls~eal~~L~ 382 (615)
T TIGR02903 311 YIKKLFEE-------GAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVH-LAAGVEELIA 382 (615)
T ss_pred hhhhhccc-------CccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHH
Confidence 77655554 444444555 5665432 11111223467899999999999999887432111 1133444555
Q ss_pred HHhCCChHHHHHHHH
Q 000679 351 RRCGGLPVAIKTIAN 365 (1355)
Q Consensus 351 ~~c~glPLai~~~~~ 365 (1355)
+....-+-|+..++.
T Consensus 383 ~ys~~gRraln~L~~ 397 (615)
T TIGR02903 383 RYTIEGRKAVNILAD 397 (615)
T ss_pred HCCCcHHHHHHHHHH
Confidence 544444555554443
No 55
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.29 E-value=8.5e-06 Score=94.50 Aligned_cols=201 Identities=13% Similarity=0.122 Sum_probs=110.6
Q ss_pred CCccccchhHHHHHHHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCC-EEEEEEeCCCCCH--HHHHH--H
Q 000679 153 TAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFD-KVVFVEVTQTPDL--QTIQN--K 227 (1355)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~--~~~~~--~ 227 (1355)
.....++|++..++.+..++..+..+.+.++|+.|+||||+|+.+++.... ..++ ..+.+++++..+. ..+.. .
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG-DPWENNFTEFNVADFFDQGKKYLVEDPR 90 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC-cccccceEEechhhhhhcchhhhhcCcc
Confidence 344568899999999999988776667889999999999999999987642 2222 2345554432110 00000 0
Q ss_pred HHHhhccccccCCCHHHHHHHHHHHHhc-----CCeEEEEEeCccccc--cccccCCCCCCccccCCCCCCCcEEEEEeC
Q 000679 228 LSSDLELEFKQNENVFQRAEKLRQRLKN-----VKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSR 300 (1355)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~~l~~~l~~-----~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR 300 (1355)
.....+..........+....+.+.... +.+-+||+||++... ..+.+...+.. ....+++|+||.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~-------~~~~~~~Il~~~ 163 (337)
T PRK12402 91 FAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQ-------YSRTCRFIIATR 163 (337)
T ss_pred hhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHh-------ccCCCeEEEEeC
Confidence 0000000000000111222222222211 244589999997552 12222222111 234567777775
Q ss_pred chh-hhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 000679 301 NRD-VLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKT 362 (1355)
Q Consensus 301 ~~~-v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 362 (1355)
... +..........+.+.+++.++....+.+.+...... --.+.++.+++.++|.+-.+..
T Consensus 164 ~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 164 QPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD-YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred ChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 432 211112234578899999999999998876332211 1245678899999887755443
No 56
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=1.7e-05 Score=91.56 Aligned_cols=193 Identities=12% Similarity=0.143 Sum_probs=108.1
Q ss_pred CCccccchhHHHHHHHHHHhhcCCc-eEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHh
Q 000679 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSD 231 (1355)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 231 (1355)
....+++|.+..++.+...+..++. ..+.++|+.|+||||+|+.+++......... ......-.....+...
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~~~ 85 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIEKG 85 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHhcC
Confidence 3445688999999999888876554 5678999999999999999998763211110 0000000011111111
Q ss_pred hccccc----cCCCHHHHHHHHHHHHh----cCCeEEEEEeCccccc--cccccCCCCCCccccCCCCCCCcEEEEEeCc
Q 000679 232 LELEFK----QNENVFQRAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSRN 301 (1355)
Q Consensus 232 l~~~~~----~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~ 301 (1355)
...+.. ......+.+..+.+.+. .+++-++|+|+++... .++.+...+.+ .....++|++|.+
T Consensus 86 ~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe-------~~~~~~fIl~t~~ 158 (363)
T PRK14961 86 LCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEE-------PPQHIKFILATTD 158 (363)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhc-------CCCCeEEEEEcCC
Confidence 000000 00011112223333222 1355699999998764 35554433333 3445666766654
Q ss_pred h-hhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHH
Q 000679 302 R-DVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAI 360 (1355)
Q Consensus 302 ~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 360 (1355)
. .+.....+....+++.+++.++..+.+...+...... --++.+..|++.++|.|-.+
T Consensus 159 ~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~-i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 159 VEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESID-TDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred hHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 3 3322112234689999999999998888766332111 12345778999999988543
No 57
>PTZ00202 tuzin; Provisional
Probab=98.28 E-value=3.1e-05 Score=86.05 Aligned_cols=165 Identities=16% Similarity=0.211 Sum_probs=103.3
Q ss_pred cccCCccccchhHHHHHHHHHHhhc---CCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHH
Q 000679 150 VSYTAYEQFDSRMKIFQNIMEVLKD---TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQN 226 (1355)
Q Consensus 150 ~~~~~~~~~~gr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 226 (1355)
..|.+..+|+||+.++..+...|.+ +..+++.|.|++|+|||||++.+..... ....+++.. +..++++
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~-----~~qL~vNpr---g~eElLr 327 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG-----MPAVFVDVR---GTEDTLR 327 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC-----ceEEEECCC---CHHHHHH
Confidence 3567778999999999999998863 2346889999999999999999996642 113333333 6799999
Q ss_pred HHHHhhccccccCCCHHHHHHHHHHHHh----c-CCeEEEEEeCcccccc----ccccCCCCCCccccCCCCCCCcEEEE
Q 000679 227 KLSSDLELEFKQNENVFQRAEKLRQRLK----N-VKRVLVILDNIWKLLN----LDAVGIPFGDVKKERNDDRSRCTVLL 297 (1355)
Q Consensus 227 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~-~k~~LlvlDdv~~~~~----~~~~~~~~~~~~~~~~~~~~~s~ilv 297 (1355)
.|+.+++.+... ...++...+.+.+. . |++.+||+-== +-+. +++. ..+.. ...-|.|++
T Consensus 328 ~LL~ALGV~p~~--~k~dLLrqIqeaLl~~~~e~GrtPVLII~lr-eg~~l~rvyne~-v~la~-------drr~ch~v~ 396 (550)
T PTZ00202 328 SVVKALGVPNVE--ACGDLLDFISEACRRAKKMNGETPLLVLKLR-EGSSLQRVYNEV-VALAC-------DRRLCHVVI 396 (550)
T ss_pred HHHHHcCCCCcc--cHHHHHHHHHHHHHHHHHhCCCCEEEEEEec-CCCcHHHHHHHH-HHHHc-------cchhheeee
Confidence 999999974332 33445555555543 2 56677776321 1111 1111 11111 234466665
Q ss_pred EeCchhh--hhhcCCCcceEecCCCCHHHHHHHHHHHh
Q 000679 298 TSRNRDV--LCNDMNSQKFFLIEVLSYEEAWCLFEKIV 333 (1355)
Q Consensus 298 TtR~~~v--~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 333 (1355)
----+.. +......-..|-+..++.++|.+.-....
T Consensus 397 evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 397 EVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred eehHhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 4433322 11123334688899999999988765543
No 58
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=2.6e-07 Score=100.62 Aligned_cols=81 Identities=21% Similarity=0.255 Sum_probs=34.5
Q ss_pred CCcceEEEecCCCccccC--cccccccCCcEEEecCCCCCC----ccccccccccceeecccCCCCccchh--hhccccC
Q 000679 559 MNELRVVHFTRTCFLSLP--SSLVCLISLRTLSLEGCQVGD----VAIVGQLKKLEILSFRNSDIQQLPRE--IGQLVQL 630 (1355)
Q Consensus 559 l~~Lr~L~L~~~~~~~lp--~~i~~L~~Lr~L~L~~~~i~~----p~~i~~L~~L~~L~L~~~~l~~lP~~--i~~L~~L 630 (1355)
++.||...|.++.....+ .....|+++|.|+|++|-+.. ..-...|++|+.|+|+.|.+.....+ ...+.+|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 344444444444443333 133444444444444444333 12223445555555555443322221 1234455
Q ss_pred cEEeccCcc
Q 000679 631 RLLDLRNCR 639 (1355)
Q Consensus 631 ~~L~l~~~~ 639 (1355)
+.|.+++|.
T Consensus 200 K~L~l~~CG 208 (505)
T KOG3207|consen 200 KQLVLNSCG 208 (505)
T ss_pred heEEeccCC
Confidence 555555543
No 59
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=1e-05 Score=98.89 Aligned_cols=186 Identities=14% Similarity=0.198 Sum_probs=111.9
Q ss_pred cCCccccchhHHHHHHHHHHhhcCCce-EEEEEecCCCcHHHHHHHHHHHHhhhcC-------------------CCEEE
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLKDTNVG-MIGVYGVNGVGKTTLVKQIAMQVIEDKL-------------------FDKVV 211 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~ 211 (1355)
|.....++|.+..++.|.+++..++.. .+.++|+.|+||||+|+.+++....... |.-++
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dvi 91 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLI 91 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEE
Confidence 344567889999999999888876654 4589999999999999999987642211 11122
Q ss_pred EEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCcccc--ccccccCCCCCCccccCCCC
Q 000679 212 FVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDD 289 (1355)
Q Consensus 212 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~ 289 (1355)
++.......+.++ +.|.+.+ ...-..+++-++|||++... ..++.+...+-. .
T Consensus 92 EidAas~~kVDdI-ReLie~v-----------------~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEE-------P 146 (944)
T PRK14949 92 EVDAASRTKVDDT-RELLDNV-----------------QYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEE-------P 146 (944)
T ss_pred EeccccccCHHHH-HHHHHHH-----------------HhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-------c
Confidence 2222111112221 2222211 11111247779999999876 344554333322 3
Q ss_pred CCCcEEEEEeCc-hhhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH-HHHHH
Q 000679 290 RSRCTVLLTSRN-RDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPV-AIKTI 363 (1355)
Q Consensus 290 ~~~s~ilvTtR~-~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 363 (1355)
....++|++|.+ ..+..........|++.+++.++..+.+.+.+..... .--.+.+..|++.++|.|- |+.++
T Consensus 147 P~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI-~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 147 PEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL-PFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred CCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 345555555544 4443212233478999999999999999887743221 1224567889999999885 44443
No 60
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.26 E-value=1.8e-06 Score=92.35 Aligned_cols=93 Identities=18% Similarity=0.193 Sum_probs=65.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCC--CCHHHHHHHHHHhhccccccCCCH------HHHHH
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQT--PDLQTIQNKLSSDLELEFKQNENV------FQRAE 247 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~------~~~~~ 247 (1355)
....++|+|++|+|||||++.++++...+ +|+.++|+.+.+. .++.++++.+...+-....+.... .....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 44689999999999999999999988654 8999999998776 789999999933322211111111 11122
Q ss_pred HHHHHHhcCCeEEEEEeCcccc
Q 000679 248 KLRQRLKNVKRVLVILDNIWKL 269 (1355)
Q Consensus 248 ~l~~~l~~~k~~LlvlDdv~~~ 269 (1355)
........++++++++|++...
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHh
Confidence 2222234479999999999754
No 61
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=1.6e-05 Score=90.32 Aligned_cols=177 Identities=15% Similarity=0.193 Sum_probs=113.8
Q ss_pred cccchhHHHHHHHHHHhhcCCc-eEEEEEecCCCcHHHHHHHHHHHHh----hhcCCCEEEEEEe-CCCCCHHHHHHHHH
Q 000679 156 EQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVI----EDKLFDKVVFVEV-TQTPDLQTIQNKLS 229 (1355)
Q Consensus 156 ~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~----~~~~F~~~~wv~~-s~~~~~~~~~~~i~ 229 (1355)
..++|-+..++.+.+++..+.. ....++|+.|+||||+|+.+++... ...|+|...|... +....++++. ++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir-~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIR-NII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHH-HHH
Confidence 3567888889999999876554 5668999999999999999998652 2356676666542 3333444432 222
Q ss_pred HhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCccc--cccccccCCCCCCccccCCCCCCCcEEEEEeCchhhh-h
Q 000679 230 SDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWK--LLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVL-C 306 (1355)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~--~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~-~ 306 (1355)
+.+.... .. +++-++|+|+++. ...++.+...+.. ...++.+|++|.+.+.. .
T Consensus 83 ~~~~~~p----------------~~-~~~kv~iI~~ad~m~~~a~naLLK~LEe-------pp~~t~~il~~~~~~~ll~ 138 (313)
T PRK05564 83 EEVNKKP----------------YE-GDKKVIIIYNSEKMTEQAQNAFLKTIEE-------PPKGVFIILLCENLEQILD 138 (313)
T ss_pred HHHhcCc----------------cc-CCceEEEEechhhcCHHHHHHHHHHhcC-------CCCCeEEEEEeCChHhCcH
Confidence 3222111 01 2444566666544 4567777666555 56788888888765432 1
Q ss_pred hcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 000679 307 NDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKT 362 (1355)
Q Consensus 307 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 362 (1355)
........+.+.++++++....+.+.... . -.+.++.++..++|.|..+..
T Consensus 139 TI~SRc~~~~~~~~~~~~~~~~l~~~~~~-~----~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 139 TIKSRCQIYKLNRLSKEEIEKFISYKYND-I----KEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred HHHhhceeeeCCCcCHHHHHHHHHHHhcC-C----CHHHHHHHHHHcCCCHHHHHH
Confidence 11223468999999999998888765431 1 123367889999999876543
No 62
>PLN03025 replication factor C subunit; Provisional
Probab=98.24 E-value=8.1e-06 Score=92.80 Aligned_cols=184 Identities=14% Similarity=0.100 Sum_probs=107.4
Q ss_pred cCCccccchhHHHHHHHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCC-EEEEEEeCCCCCHHHHHHHHHH
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFD-KVVFVEVTQTPDLQTIQNKLSS 230 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~ 230 (1355)
|....+++|.++.++.|..++..+..+.+-++|++|+||||+|+.+++.... ..|. .++-++.++...... .+.+++
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~eln~sd~~~~~~-vr~~i~ 86 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG-PNYKEAVLELNASDDRGIDV-VRNKIK 86 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc-ccCccceeeecccccccHHH-HHHHHH
Confidence 4455668899888888888887766677889999999999999999988632 1232 223333333333322 222222
Q ss_pred hhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCccccc--cccccCCCCCCccccCCCCCCCcEEEEEeCch-hhhhh
Q 000679 231 DLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSRNR-DVLCN 307 (1355)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~-~v~~~ 307 (1355)
.+..... .+..++.-++|+|+++... ..+.+...+.. ....+++++++... .+...
T Consensus 87 ~~~~~~~--------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~-------~~~~t~~il~~n~~~~i~~~ 145 (319)
T PLN03025 87 MFAQKKV--------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEI-------YSNTTRFALACNTSSKIIEP 145 (319)
T ss_pred HHHhccc--------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhc-------ccCCceEEEEeCCccccchh
Confidence 1110000 0111356789999998763 22222221111 23456677766443 22110
Q ss_pred cCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHH
Q 000679 308 DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVA 359 (1355)
Q Consensus 308 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 359 (1355)
.......++++++++++....+.+.+......- -.+....|++.++|-.-.
T Consensus 146 L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i-~~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 146 IQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPY-VPEGLEAIIFTADGDMRQ 196 (319)
T ss_pred HHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHH
Confidence 112235789999999999999988773322111 134577899999887643
No 63
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.24 E-value=9.5e-06 Score=87.87 Aligned_cols=170 Identities=13% Similarity=0.159 Sum_probs=102.5
Q ss_pred hhHHHHHHHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccC
Q 000679 160 SRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQN 239 (1355)
Q Consensus 160 gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~ 239 (1355)
+.+..++.+.+++.....+.|.|+|+.|+|||++|+.+++.... .....++++++.-.+ ..
T Consensus 21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~--~~~~~~~i~~~~~~~------~~----------- 81 (226)
T TIGR03420 21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE--RGKSAIYLPLAELAQ------AD----------- 81 (226)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEeHHHHHH------hH-----------
Confidence 35567777777766666678999999999999999999988642 234456665443211 00
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEEeCccccc---ccc-ccCCCCCCccccCCCCCCCcEEEEEeCchhhh--------hh
Q 000679 240 ENVFQRAEKLRQRLKNVKRVLVILDNIWKLL---NLD-AVGIPFGDVKKERNDDRSRCTVLLTSRNRDVL--------CN 307 (1355)
Q Consensus 240 ~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~---~~~-~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~--------~~ 307 (1355)
..+...+. +.-+||+||++... .|. .+...+.. . ...+.++|+||+..... ..
T Consensus 82 -------~~~~~~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~----~--~~~~~~iIits~~~~~~~~~~~~~L~~ 146 (226)
T TIGR03420 82 -------PEVLEGLE--QADLVCLDDVEAIAGQPEWQEALFHLYNR----V--REAGGRLLIAGRAAPAQLPLRLPDLRT 146 (226)
T ss_pred -------HHHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHH----H--HHcCCeEEEECCCChHHCCcccHHHHH
Confidence 01112222 33489999998653 232 22211111 0 12334788888754311 00
Q ss_pred cCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHH
Q 000679 308 DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIA 364 (1355)
Q Consensus 308 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 364 (1355)
.......+++.+++.++-..++...+..... .--.+..+.+++.++|.|..+.-+.
T Consensus 147 r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 147 RLAWGLVFQLPPLSDEEKIAALQSRAARRGL-QLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred HHhcCeeEecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHH
Confidence 1222457899999999999998876522111 1123556778888888887766554
No 64
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=1e-05 Score=95.49 Aligned_cols=180 Identities=12% Similarity=0.143 Sum_probs=110.3
Q ss_pred cCCccccchhHHHHHHHHHHhhcCCc-eEEEEEecCCCcHHHHHHHHHHHHhhhc------------------------C
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDK------------------------L 206 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------------~ 206 (1355)
|....+++|.+..++.|.+++..++. ..+.++|+.|+||||+|+.+++...... .
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~ 91 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGR 91 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCC
Confidence 34556788999999999999886654 4568999999999999999998764210 0
Q ss_pred CCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHh----cCCeEEEEEeCcccc--ccccccCCCCC
Q 000679 207 FDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFG 280 (1355)
Q Consensus 207 F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~ 280 (1355)
|..+++++......+++ +..+.+.+. .++.-++|+|+++.. ..++.+...+-
T Consensus 92 hpDviEIdAas~~gVDd----------------------IReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLE 149 (700)
T PRK12323 92 FVDYIEMDAASNRGVDE----------------------MAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLE 149 (700)
T ss_pred CCcceEecccccCCHHH----------------------HHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhc
Confidence 11122222221111211 222222221 246678999999876 34555443333
Q ss_pred CccccCCCCCCCcEEE-EEeCchhhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHH
Q 000679 281 DVKKERNDDRSRCTVL-LTSRNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVA 359 (1355)
Q Consensus 281 ~~~~~~~~~~~~s~il-vTtR~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 359 (1355)
. -..++++| +||....+..........+.+..++.++..+.+.+.+....... -.+..+.|++.++|.|..
T Consensus 150 E-------PP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~-d~eAL~~IA~~A~Gs~Rd 221 (700)
T PRK12323 150 E-------PPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH-EVNALRLLAQAAQGSMRD 221 (700)
T ss_pred c-------CCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHH
Confidence 2 33445544 45544544422223346899999999999999888764322211 234567899999999964
Q ss_pred HH
Q 000679 360 IK 361 (1355)
Q Consensus 360 i~ 361 (1355)
..
T Consensus 222 AL 223 (700)
T PRK12323 222 AL 223 (700)
T ss_pred HH
Confidence 43
No 65
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.23 E-value=3.5e-06 Score=93.38 Aligned_cols=101 Identities=18% Similarity=0.223 Sum_probs=68.1
Q ss_pred HHHHHhh-cCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCC--CHHHHHHHHHHhhccccccCCCHH
Q 000679 167 NIMEVLK-DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP--DLQTIQNKLSSDLELEFKQNENVF 243 (1355)
Q Consensus 167 ~l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~ 243 (1355)
++++.+. =..-....|+|++|+||||||+++|+....+ +|+.++||.+.+.. ++.++++.|...+-....+ ....
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d-~~~~ 235 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFD-EPAE 235 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCC-CCHH
Confidence 3444443 1233578999999999999999999998765 89999999999887 7888888886432222111 1111
Q ss_pred HH------HHHHHHHH-hcCCeEEEEEeCcccc
Q 000679 244 QR------AEKLRQRL-KNVKRVLVILDNIWKL 269 (1355)
Q Consensus 244 ~~------~~~l~~~l-~~~k~~LlvlDdv~~~ 269 (1355)
.. +-...+++ ..|++++|++|++...
T Consensus 236 ~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 236 RHVQVAEMVIEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEEChHHH
Confidence 11 11122222 3579999999999654
No 66
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=2.8e-05 Score=91.95 Aligned_cols=179 Identities=16% Similarity=0.225 Sum_probs=109.1
Q ss_pred cCCccccchhHHHHHHHHHHhhcCCc-eEEEEEecCCCcHHHHHHHHHHHHhhhcCC-----------------------
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDKLF----------------------- 207 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----------------------- 207 (1355)
|....+++|-+..+..+...+..+.. ..+.++|+.|+||||+|+.+++..-.....
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h 96 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNH 96 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCC
Confidence 34455678999888888887765543 578899999999999999999876321111
Q ss_pred CEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHh----cCCeEEEEEeCcccc--ccccccCCCCCC
Q 000679 208 DKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGD 281 (1355)
Q Consensus 208 ~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~ 281 (1355)
..++.++......+.++ ..+.+... .+++-++|+|+++.. ..|+.+...+..
T Consensus 97 ~Dv~eidaas~~~vd~I----------------------r~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEe 154 (507)
T PRK06645 97 PDIIEIDAASKTSVDDI----------------------RRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEE 154 (507)
T ss_pred CcEEEeeccCCCCHHHH----------------------HHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhh
Confidence 01112222211122221 12222211 136678999999875 346555444333
Q ss_pred ccccCCCCCCCcEEEE-EeCchhhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHH
Q 000679 282 VKKERNDDRSRCTVLL-TSRNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAI 360 (1355)
Q Consensus 282 ~~~~~~~~~~~s~ilv-TtR~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 360 (1355)
....+++|+ ||+...+..........+.+.+++.++....+.+.+......- -.+....|++.++|.+--+
T Consensus 155 -------pp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i-e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 155 -------PPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKT-DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred -------cCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 344555554 5555555432233446799999999999999998884322211 1345677999999977433
No 67
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=1.9e-05 Score=93.62 Aligned_cols=179 Identities=12% Similarity=0.151 Sum_probs=110.1
Q ss_pred cCCccccchhHHHHHHHHHHhhcCC-ceEEEEEecCCCcHHHHHHHHHHHHhhhc-------------------CCCEEE
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLKDTN-VGMIGVYGVNGVGKTTLVKQIAMQVIEDK-------------------LFDKVV 211 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~ 211 (1355)
|.....++|.+...+.|..++..++ ...+.++|+.|+||||+|+.+++...... .|-.++
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDvi 90 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLI 90 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceE
Confidence 4455678999999999999988665 35778999999999999999998763211 111122
Q ss_pred EEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHH----hcCCeEEEEEeCccccc--cccccCCCCCCcccc
Q 000679 212 FVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRL----KNVKRVLVILDNIWKLL--NLDAVGIPFGDVKKE 285 (1355)
Q Consensus 212 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~ 285 (1355)
.++.+....+++ ++.+.... ..+++-++|+|+|+... .++.+...+..
T Consensus 91 EIDAAs~~~Vdd----------------------IReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEE---- 144 (702)
T PRK14960 91 EIDAASRTKVED----------------------TRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEE---- 144 (702)
T ss_pred EecccccCCHHH----------------------HHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc----
Confidence 222222212221 12222211 12466789999998763 34444333322
Q ss_pred CCCCCCCcEEEEEeCch-hhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHH
Q 000679 286 RNDDRSRCTVLLTSRNR-DVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAI 360 (1355)
Q Consensus 286 ~~~~~~~s~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 360 (1355)
...+.++|++|.+. .+..........+++.+++.++..+.+.+.+...... --.+....|++.++|.+-.+
T Consensus 145 ---PP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~-id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 145 ---PPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA-ADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred ---CCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 33456777766553 2322123345789999999999999988877432221 12345678999999977443
No 68
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=2.5e-05 Score=92.97 Aligned_cols=197 Identities=14% Similarity=0.137 Sum_probs=110.5
Q ss_pred cCCccccchhHHHHHHHHHHhhcCCc-eEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHH
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSS 230 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 230 (1355)
|....+++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+++.......+...+|++.+... +..-...-..
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv~ 88 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDVL 88 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCceE
Confidence 33445688999988888888876654 456999999999999999999887532222222333221100 0000000000
Q ss_pred hhccccccCCCHHHHHHHHHHHHh----cCCeEEEEEeCcccc--ccccccCCCCCCccccCCCCCCCcEEEEEeC-chh
Q 000679 231 DLELEFKQNENVFQRAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLTSR-NRD 303 (1355)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR-~~~ 303 (1355)
.+... . ....+.+..+.+.+. .+++-++|+|+++.. ..++.+...+.. ......+|++|. ...
T Consensus 89 el~~~--~-~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEe-------p~~~t~~Il~t~~~~k 158 (504)
T PRK14963 89 EIDAA--S-NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEE-------PPEHVIFILATTEPEK 158 (504)
T ss_pred Eeccc--c-cCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHh-------CCCCEEEEEEcCChhh
Confidence 00000 0 011122223333222 136668999999765 234444433332 334445555554 333
Q ss_pred hhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHH
Q 000679 304 VLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAI 360 (1355)
Q Consensus 304 v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 360 (1355)
+..........+++.+++.++..+.+.+.+....... -.+.+..|++.++|.+--+
T Consensus 159 l~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i-~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 159 MPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA-EPEALQLVARLADGAMRDA 214 (504)
T ss_pred CChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 3221233356899999999999999998773322111 2456788999999988544
No 69
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=8e-06 Score=94.16 Aligned_cols=192 Identities=13% Similarity=0.135 Sum_probs=109.9
Q ss_pred cCCccccchhHHHHHHHHHHhhcCCce-EEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHH
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLKDTNVG-MIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSS 230 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 230 (1355)
|.....++|.+..+..|..++..+... .+.++|+.|+||||+|+.+++.......... .......+ ...+..
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~s----C~~i~~ 86 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTS----CLEITK 86 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcH----HHHHHc
Confidence 345567889999999999888876654 5799999999999999999987632111000 00011111 111111
Q ss_pred hhcccc---cc-CCCHHHHHHHHHHHHh----cCCeEEEEEeCcccc--ccccccCCCCCCccccCCCCCCCcEEE-EEe
Q 000679 231 DLELEF---KQ-NENVFQRAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVL-LTS 299 (1355)
Q Consensus 231 ~l~~~~---~~-~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~s~il-vTt 299 (1355)
....+. +. .....+.+..+.+.+. .++.-++|+|+|+.. ..++.+...+.. ......+| .||
T Consensus 87 g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEE-------Pp~~viFILaTt 159 (484)
T PRK14956 87 GISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEE-------PPAHIVFILATT 159 (484)
T ss_pred cCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhc-------CCCceEEEeecC
Confidence 111000 00 0011122233333322 246668999999876 346665444332 23344444 455
Q ss_pred CchhhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH
Q 000679 300 RNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPV 358 (1355)
Q Consensus 300 R~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL 358 (1355)
....+..........|.+.+++.++..+.+.+.+...... --.+....|++.++|.+-
T Consensus 160 e~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~-~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 160 EFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQ-YDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred ChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCChHH
Confidence 5444432223334679999999999998888876432221 124557889999999874
No 70
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.19 E-value=1.2e-06 Score=103.87 Aligned_cols=155 Identities=25% Similarity=0.333 Sum_probs=81.3
Q ss_pred CceEEEEeeccCCCCcccChhhhcCCC-cceEEEecCCCccccCcccccccCCcEEEecCCCCCC-ccccccccccceee
Q 000679 534 PKLSLFLLFAKYDSSLKIPDLFFEGMN-ELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGD-VAIVGQLKKLEILS 611 (1355)
Q Consensus 534 ~~Lr~L~l~~~~~~~~~lp~~~~~~l~-~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~-p~~i~~L~~L~~L~ 611 (1355)
..+..|.+..+ ....++... ..++ +|+.|+++++.+..+|..+..+++|+.|++++|++.+ |...+.+.+|+.|+
T Consensus 116 ~~l~~L~l~~n--~i~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNN--NITDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCc--ccccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 44555555444 344444432 3332 5666666666666665555666666666666666655 44444566666666
Q ss_pred cccCCCCccchhhhccccCcEEeccCcchhhccchhHHhhhccccccccCCCccccccccCCCccchhhhcCCCCCCeEE
Q 000679 612 FRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTLE 691 (1355)
Q Consensus 612 L~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~ 691 (1355)
+++|.+..+|..+..+..|+.|.++++. ....+.. ++++.++..|.+.++... ..+..++.+.+|+.|+
T Consensus 193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~---------~~~~~~~~l~~l~~L~ 261 (394)
T COG4886 193 LSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLE---------DLPESIGNLSNLETLD 261 (394)
T ss_pred ccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceee---------eccchhccccccceec
Confidence 6666666666555555556666665532 2223332 555555555554444321 1133444555555555
Q ss_pred EEeccccCCCh
Q 000679 692 IHIRDARIMPQ 702 (1355)
Q Consensus 692 l~~~~~~~~~~ 702 (1355)
++.+....++.
T Consensus 262 ~s~n~i~~i~~ 272 (394)
T COG4886 262 LSNNQISSISS 272 (394)
T ss_pred ccccccccccc
Confidence 55555555444
No 71
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=2.2e-05 Score=93.41 Aligned_cols=189 Identities=12% Similarity=0.150 Sum_probs=111.3
Q ss_pred cCCccccchhHHHHHHHHHHhhcCCc-eEEEEEecCCCcHHHHHHHHHHHHhhh-------------------cCCCEEE
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIED-------------------KLFDKVV 211 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~ 211 (1355)
|.....++|.+..++.+..++..++. ..+.++|+.|+||||+|+.+++..... ..|...+
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 34456788999999999988876544 457899999999999999999865321 1122233
Q ss_pred EEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCccccc--cccccCCCCCCccccCCCC
Q 000679 212 FVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDD 289 (1355)
Q Consensus 212 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~ 289 (1355)
++.......++++ +.+.+ .+...-..+++-++|+|+++... .++.+...+.. .
T Consensus 92 eidaas~~gvd~i-r~ii~-----------------~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEe-------p 146 (546)
T PRK14957 92 EIDAASRTGVEET-KEILD-----------------NIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEE-------P 146 (546)
T ss_pred EeecccccCHHHH-HHHHH-----------------HHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhc-------C
Confidence 3332222222221 11111 11111112466799999997652 34444433333 3
Q ss_pred CCCcEEE-EEeCchhhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh-HHHHHHHHH
Q 000679 290 RSRCTVL-LTSRNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLP-VAIKTIANA 366 (1355)
Q Consensus 290 ~~~s~il-vTtR~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~~ 366 (1355)
...+++| +||....+..........+++++++.++..+.+.+.+..... .--.+....|++.++|.+ -|+..+-.+
T Consensus 147 p~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi-~~e~~Al~~Ia~~s~GdlR~alnlLek~ 224 (546)
T PRK14957 147 PEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI-NSDEQSLEYIAYHAKGSLRDALSLLDQA 224 (546)
T ss_pred CCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3455555 555444443212333578999999999988888876533221 112445678999999966 455555433
No 72
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.18 E-value=9.1e-06 Score=81.54 Aligned_cols=126 Identities=19% Similarity=0.157 Sum_probs=74.1
Q ss_pred chhHHHHHHHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhcccccc
Q 000679 159 DSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQ 238 (1355)
Q Consensus 159 ~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~ 238 (1355)
.||+..++.+...+.....+.+.|+|++|+|||++|+.+++.... .-..++++...+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~------- 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR--PGAPFLYLNASDLLEGLVVAELFGHF------- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhc--CCCCeEEEehhhhhhhhHHHHHhhhh-------
Confidence 378888899988887766788999999999999999999998742 12446677665544322222111100
Q ss_pred CCCHHHHHHHHHHHHhcCCeEEEEEeCcccc-----ccccccCCCCCCccccCCCCCCCcEEEEEeCchh
Q 000679 239 NENVFQRAEKLRQRLKNVKRVLVILDNIWKL-----LNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRD 303 (1355)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~-----~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~ 303 (1355)
........... .++.++|+||++.. ..+..+...+.. .. ....+..||+||....
T Consensus 72 -----~~~~~~~~~~~-~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~---~~-~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----LVRLLFELAEK-AKPGVLFIDEIDSLSRGAQNALLRVLETLND---LR-IDRENVRVIGATNRPL 131 (151)
T ss_pred -----hHhHHHHhhcc-CCCeEEEEeChhhhhHHHHHHHHHHHHhcCc---ee-ccCCCeEEEEecCccc
Confidence 00001111112 37789999999854 112221111111 00 0146788888888653
No 73
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=3.6e-05 Score=90.83 Aligned_cols=190 Identities=17% Similarity=0.189 Sum_probs=108.9
Q ss_pred cCCccccchhHHHHHHHHHHhhcCCc-eEEEEEecCCCcHHHHHHHHHHHHhhhcC-------------------CCEEE
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDKL-------------------FDKVV 211 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~ 211 (1355)
|.....++|.+.....+...+..+.. ..+.++|++|+||||+|+.+++....... +..++
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~ 89 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVI 89 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccE
Confidence 34456788998888888888776665 45789999999999999999887532110 11122
Q ss_pred EEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCcccc--ccccccCCCCCCccccCCCC
Q 000679 212 FVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDD 289 (1355)
Q Consensus 212 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~ 289 (1355)
.++.+....+.++. .|..... ..-..+++-++|+|+++.. ...+.+...+.. .
T Consensus 90 el~aa~~~gid~iR-~i~~~~~-----------------~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~-------p 144 (472)
T PRK14962 90 ELDAASNRGIDEIR-KIRDAVG-----------------YRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEE-------P 144 (472)
T ss_pred EEeCcccCCHHHHH-HHHHHHh-----------------hChhcCCeEEEEEEChHHhHHHHHHHHHHHHHh-------C
Confidence 23332222222221 2221111 0001136679999999754 233333333222 2
Q ss_pred CCCcEEEE-EeCchhhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCC-ChHHHHHHHHHH
Q 000679 290 RSRCTVLL-TSRNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGG-LPVAIKTIANAL 367 (1355)
Q Consensus 290 ~~~s~ilv-TtR~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~~~~l 367 (1355)
.....+|+ ||....+..........+.+.+++.++....+.+.+...... --.+....|++.++| ++.|+..+-.+.
T Consensus 145 ~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~-i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 145 PSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE-IDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred CCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 23344444 443334433223445689999999999999888877322111 123556778887754 567777765543
No 74
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.16 E-value=1.8e-06 Score=102.54 Aligned_cols=146 Identities=25% Similarity=0.368 Sum_probs=68.6
Q ss_pred eEEEeCCCCCCCCCCCccCCC--ceEEEEeeccCCCCcccChhhhcCCCcceEEEecCCCccccCcccccccCCcEEEec
Q 000679 514 SIAISLPNRDIDELPERLECP--KLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLE 591 (1355)
Q Consensus 514 ~r~lsl~~~~~~~l~~~~~~~--~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~ 591 (1355)
...+.+..+.+.+++...... +|+.|.+.++ ....+|..+ ..++.|+.|++++|.+..+|...+.+..|+.|+++
T Consensus 118 l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N--~i~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 118 LTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN--KIESLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred eeEEecCCcccccCccccccchhhccccccccc--chhhhhhhh-hccccccccccCCchhhhhhhhhhhhhhhhheecc
Confidence 344444444444444433332 4555555444 333333222 44555555555555555555544445555555555
Q ss_pred CCCCCC-ccccccccccceeecccCCCCccchhhhccccCcEEeccCcchhhccchhHHhhhccccccccCCCc
Q 000679 592 GCQVGD-VAIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSF 664 (1355)
Q Consensus 592 ~~~i~~-p~~i~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~ 664 (1355)
++.+.. |..++.+.+|++|.+++|.+...|..+.++.++..|.+.+ +.+..++.. ++++.+|+.|++++|.
T Consensus 195 ~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~-~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 195 GNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLEDLPES-IGNLSNLETLDLSNNQ 266 (394)
T ss_pred CCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC-ceeeeccch-hccccccceecccccc
Confidence 555555 4444444445555555554444444455555555555444 223332222 4455555555554443
No 75
>PLN03150 hypothetical protein; Provisional
Probab=98.15 E-value=2.9e-06 Score=105.16 Aligned_cols=103 Identities=18% Similarity=0.357 Sum_probs=81.8
Q ss_pred cceEEEecCCCccc-cCcccccccCCcEEEecCCCCCC--ccccccccccceeecccCCCC-ccchhhhccccCcEEecc
Q 000679 561 ELRVVHFTRTCFLS-LPSSLVCLISLRTLSLEGCQVGD--VAIVGQLKKLEILSFRNSDIQ-QLPREIGQLVQLRLLDLR 636 (1355)
Q Consensus 561 ~Lr~L~L~~~~~~~-lp~~i~~L~~Lr~L~L~~~~i~~--p~~i~~L~~L~~L~L~~~~l~-~lP~~i~~L~~L~~L~l~ 636 (1355)
.++.|+|+++.+.. +|..|+++++|++|+|++|.+.. |..++.+.+|++|||++|.+. .+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47788888888864 78888899999999999998875 778889999999999998876 688888999999999998
Q ss_pred CcchhhccchhHHhh-hccccccccCCCc
Q 000679 637 NCRRLQAIAPNVISK-LSRLEELYMGDSF 664 (1355)
Q Consensus 637 ~~~~l~~~p~~~i~~-L~~L~~L~l~~~~ 664 (1355)
+|.....+|.. ++. +.++..+++.+|.
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCc
Confidence 87766677776 554 3456666666553
No 76
>PRK08727 hypothetical protein; Validated
Probab=98.14 E-value=2.5e-05 Score=84.03 Aligned_cols=163 Identities=13% Similarity=0.111 Sum_probs=95.8
Q ss_pred HHHHHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHH
Q 000679 164 IFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVF 243 (1355)
Q Consensus 164 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~ 243 (1355)
.+..+.....+.....+.|+|..|+|||.||+.+++....+ ...+.|+++.+ ....+
T Consensus 28 ~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~------~~~~~--------------- 84 (233)
T PRK08727 28 LLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQA------AAGRL--------------- 84 (233)
T ss_pred HHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH------hhhhH---------------
Confidence 34444443334444679999999999999999999986533 23556775422 11111
Q ss_pred HHHHHHHHHHhcCCeEEEEEeCcccccc---ccccCCCCCCccccCCCCCCCcEEEEEeCchhhh--------hhcCCCc
Q 000679 244 QRAEKLRQRLKNVKRVLVILDNIWKLLN---LDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVL--------CNDMNSQ 312 (1355)
Q Consensus 244 ~~~~~l~~~l~~~k~~LlvlDdv~~~~~---~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~--------~~~~~~~ 312 (1355)
....+.+. +.-+||+||+..... |..... +++... ...|..||+|++...-. ...+...
T Consensus 85 ---~~~~~~l~--~~dlLiIDDi~~l~~~~~~~~~lf---~l~n~~--~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~ 154 (233)
T PRK08727 85 ---RDALEALE--GRSLVALDGLESIAGQREDEVALF---DFHNRA--RAAGITLLYTARQMPDGLALVLPDLRSRLAQC 154 (233)
T ss_pred ---HHHHHHHh--cCCEEEEeCcccccCChHHHHHHH---HHHHHH--HHcCCeEEEECCCChhhhhhhhHHHHHHHhcC
Confidence 11222333 446999999975532 321111 111111 22466799999864221 1123334
Q ss_pred ceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHH
Q 000679 313 KFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAI 360 (1355)
Q Consensus 313 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 360 (1355)
..+++++++.++-.+++++++.... -.--+++...|++.++|-.-.+
T Consensus 155 ~~~~l~~~~~e~~~~iL~~~a~~~~-l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 155 IRIGLPVLDDVARAAVLRERAQRRG-LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred ceEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhCCCCHHHH
Confidence 6899999999999999998773321 1122456778888887665444
No 77
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.13 E-value=2.5e-06 Score=69.69 Aligned_cols=56 Identities=21% Similarity=0.352 Sum_probs=30.7
Q ss_pred cceEEEecCCCccccCc-ccccccCCcEEEecCCCCCC--ccccccccccceeecccCC
Q 000679 561 ELRVVHFTRTCFLSLPS-SLVCLISLRTLSLEGCQVGD--VAIVGQLKKLEILSFRNSD 616 (1355)
Q Consensus 561 ~Lr~L~L~~~~~~~lp~-~i~~L~~Lr~L~L~~~~i~~--p~~i~~L~~L~~L~L~~~~ 616 (1355)
+|++|++++|.+..+|. .|..+++|++|++++|.+.. +..|.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45566666666555553 45555555555555555554 3445555555555555553
No 78
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.12 E-value=4.6e-05 Score=87.63 Aligned_cols=182 Identities=13% Similarity=0.124 Sum_probs=105.4
Q ss_pred CCccccchhHHHHHHHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEe--CCCCCHHHHHHHHHH
Q 000679 153 TAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEV--TQTPDLQTIQNKLSS 230 (1355)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~--s~~~~~~~~~~~i~~ 230 (1355)
....+++|+++.++.+.+++.....+.+.++|+.|+||||+|+.+++..... .+.. .++.+ +.......+. ..+.
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~-~~~~-~~i~~~~~~~~~~~~~~-~~i~ 90 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGE-DWRE-NFLELNASDERGIDVIR-NKIK 90 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCC-cccc-ceEEeccccccchHHHH-HHHH
Confidence 3445688999999999999987766778999999999999999999886322 1211 12222 2222211111 1111
Q ss_pred hhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCccccc--cccccCCCCCCccccCCCCCCCcEEEEEeCch-hhhhh
Q 000679 231 DLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSRNR-DVLCN 307 (1355)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~-~v~~~ 307 (1355)
++..... .....+-++++|+++... ..+.+...+.. ....+++|+++... .+...
T Consensus 91 ~~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~-------~~~~~~lIl~~~~~~~l~~~ 148 (319)
T PRK00440 91 EFARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEM-------YSQNTRFILSCNYSSKIIDP 148 (319)
T ss_pred HHHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhc-------CCCCCeEEEEeCCccccchh
Confidence 1110000 011245689999986542 22223222222 23446677766432 11110
Q ss_pred cCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHH
Q 000679 308 DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAI 360 (1355)
Q Consensus 308 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 360 (1355)
.......+++.+++.++....+.+.+...... --.+.+..+++.++|.+--+
T Consensus 149 l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~-i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 149 IQSRCAVFRFSPLKKEAVAERLRYIAENEGIE-ITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred HHHHhheeeeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 11223478999999999999888877432211 12456778999999988653
No 79
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.12 E-value=9.4e-06 Score=91.18 Aligned_cols=108 Identities=19% Similarity=0.294 Sum_probs=67.0
Q ss_pred cCccceeEeccCCCcceecccCCCCccccCCCcEEEEec--CCCCCCCcchhHHhhcCCCCEEEEeccCCceeeeecccc
Q 000679 1185 FHDIKDLKLSQFPHLKEIWHGQALNVSIFSNLRSLGVDN--CTNMSSAIPANLLRCLNNLERLKVRNCDSLEEVFHLEDV 1262 (1355)
Q Consensus 1185 l~~L~~L~l~~c~~l~~l~~~~p~~~~~l~~L~~L~l~~--C~~l~~l~p~~~l~~l~sL~~L~i~~C~~l~~l~~~~~~ 1262 (1355)
+++|+.|++++|..+..+ | ++|+.|++.. |+.+..+ | ++|+.|.+.++...... .
T Consensus 93 P~nLe~L~Ls~Cs~L~sL----P------~sLe~L~L~~n~~~~L~~L-P-------ssLk~L~I~~~n~~~~~-----~ 149 (426)
T PRK15386 93 PEGLEKLTVCHCPEISGL----P------ESVRSLEIKGSATDSIKNV-P-------NGLTSLSINSYNPENQA-----R 149 (426)
T ss_pred hhhhhheEccCccccccc----c------cccceEEeCCCCCcccccC-c-------chHhheecccccccccc-----c
Confidence 367888999988778766 3 4677777753 2334443 2 46778888543311110 0
Q ss_pred CCcCcCCCCCC-cccEEecCCCCCceeecCCCccccccCCcCeEEEccCC------Cccccccccccccccc
Q 000679 1263 NADEHFGPLFP-KLYELELIDLPKLKRFCNFKWNIIELLSLSSLWIENCP------NMETFISNSTSINLAE 1327 (1355)
Q Consensus 1263 ~~~~~~~~~lp-sL~~L~i~~c~~L~~~~~~~~~~~~~~sL~~l~i~~C~------~l~~l~~~~~~l~~~~ 1327 (1355)
....|| +|++|.+.+|..+. +|.. -+.+|+.|.+..+. ...++|+++ .|...+
T Consensus 150 -----lp~~LPsSLk~L~Is~c~~i~-LP~~-----LP~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n 209 (426)
T PRK15386 150 -----IDNLISPSLKTLSLTGCSNII-LPEK-----LPESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQN 209 (426)
T ss_pred -----cccccCCcccEEEecCCCccc-Cccc-----ccccCcEEEecccccccccCccccccccc-Eechhh
Confidence 111255 99999999999764 3321 26799999998763 233666666 555554
No 80
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.12 E-value=1e-05 Score=84.57 Aligned_cols=73 Identities=18% Similarity=0.324 Sum_probs=43.2
Q ss_pred cchhHHHHHHHHHHhh---cCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCC-----CHHHHHHHHH
Q 000679 158 FDSRMKIFQNIMEVLK---DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP-----DLQTIQNKLS 229 (1355)
Q Consensus 158 ~~gr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-----~~~~~~~~i~ 229 (1355)
|+||+++++++.+.+. ....+.+.|+|.+|+|||+|+++++........+ ++.+.+.... ....++++++
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGY--VISINCDDSERNPYSPFRSALRQLI 79 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT----EEEEEEETTTS-HHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCE--EEEEEEeccccchhhHHHHHHHHHH
Confidence 7999999999999993 4456899999999999999999999988765323 3333333331 1245555555
Q ss_pred Hhh
Q 000679 230 SDL 232 (1355)
Q Consensus 230 ~~l 232 (1355)
.++
T Consensus 80 ~~~ 82 (185)
T PF13191_consen 80 DQL 82 (185)
T ss_dssp ---
T ss_pred HHh
Confidence 443
No 81
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.11 E-value=3e-05 Score=92.12 Aligned_cols=199 Identities=12% Similarity=0.127 Sum_probs=107.9
Q ss_pred cCCccccchhHHHHHHHHHHhhcCCc-eEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHH
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSS 230 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 230 (1355)
|....+++|++..++.+.+++..+.. ..+.++|+.|+||||+|+.+++...... |... .........+.+..
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~-~~Cg~C~sCr~i~~ 84 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDG-DCCNSCSVCESINT 84 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCC-CCCcccHHHHHHHc
Confidence 44556788999999999998876544 4688999999999999999998763211 1110 01111111111111
Q ss_pred hhcccc---cc-CCCHHHHHHHHHHHHhc----CCeEEEEEeCcccc--ccccccCCCCCCccccCCCCCCCcEEEE-Ee
Q 000679 231 DLELEF---KQ-NENVFQRAEKLRQRLKN----VKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLL-TS 299 (1355)
Q Consensus 231 ~l~~~~---~~-~~~~~~~~~~l~~~l~~----~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~s~ilv-Tt 299 (1355)
....+. +. .....+.++.+.+.... +++-++|+|+++.. ..++.+...+.. ......+|+ |+
T Consensus 85 ~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEE-------Pp~~tvfIL~Tt 157 (605)
T PRK05896 85 NQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEE-------PPKHVVFIFATT 157 (605)
T ss_pred CCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHh-------CCCcEEEEEECC
Confidence 110000 00 00011112222222111 23446999999765 334444333222 233445554 44
Q ss_pred CchhhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh-HHHHHHHH
Q 000679 300 RNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLP-VAIKTIAN 365 (1355)
Q Consensus 300 R~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~ 365 (1355)
....+..........+++.+++.++....+.+.+......- -.+.+..+++.++|.+ .|+..+-.
T Consensus 158 ~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I-s~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 158 EFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI-EDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred ChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 44444321233356899999999999988888763321111 1345778999999966 45544443
No 82
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.10 E-value=5.6e-05 Score=77.16 Aligned_cols=182 Identities=19% Similarity=0.191 Sum_probs=91.1
Q ss_pred cCCccccchhHHHHHHHHHHhh-----cCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHH
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLK-----DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQN 226 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 226 (1355)
|....+|+|.+..++.+.-++. +....-+-+||++|+||||||.-++++.... | .+.+...-....++.
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~---~~~sg~~i~k~~dl~- 93 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN--F---KITSGPAIEKAGDLA- 93 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----E---EEEECCC--SCHHHH-
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC--e---EeccchhhhhHHHHH-
Confidence 4566789999888877654443 2346788999999999999999999987533 3 122221111111111
Q ss_pred HHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCccccc---------cccccCC--CCCCc---cccCCCCCCC
Q 000679 227 KLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL---------NLDAVGI--PFGDV---KKERNDDRSR 292 (1355)
Q Consensus 227 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~---------~~~~~~~--~~~~~---~~~~~~~~~~ 292 (1355)
.++ ..++ ++-+|.+|++.... ..++... ....- ..-...-.+=
T Consensus 94 ~il---------------------~~l~--~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~F 150 (233)
T PF05496_consen 94 AIL---------------------TNLK--EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPF 150 (233)
T ss_dssp HHH---------------------HT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----
T ss_pred HHH---------------------HhcC--CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCc
Confidence 111 1222 34466667765431 0111100 00000 0000001122
Q ss_pred cEEEEEeCchhhhhhcCCC-cceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 000679 293 CTVLLTSRNRDVLCNDMNS-QKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 363 (1355)
Q Consensus 293 s~ilvTtR~~~v~~~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 363 (1355)
+-|=.|||...+....... ....+++..+.+|-.++..+.+..-.. +--++.+.+|++++.|-|--+.-+
T Consensus 151 TligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i-~i~~~~~~~Ia~rsrGtPRiAnrl 221 (233)
T PF05496_consen 151 TLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI-EIDEDAAEEIARRSRGTPRIANRL 221 (233)
T ss_dssp EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT--EE-HHHHHHHHHCTTTSHHHHHHH
T ss_pred eEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHhcCCChHHHHHH
Confidence 3466789987654311222 335689999999999999887743222 222567899999999999654443
No 83
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.08 E-value=7.1e-07 Score=91.78 Aligned_cols=128 Identities=20% Similarity=0.239 Sum_probs=96.1
Q ss_pred CCceEEEEeeccCCCCcccChhhhcCCCcceEEEecCCCccccCcccccccCCcEEEecCCCCCCccc-cccccccceee
Q 000679 533 CPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGDVAI-VGQLKKLEILS 611 (1355)
Q Consensus 533 ~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~p~~-i~~L~~L~~L~ 611 (1355)
+..|..+.++.| .+..+.+++ .-.+.+|+|++++|.+..+-. +..|++|..|||++|.+..... -.+|-|.++|.
T Consensus 283 Wq~LtelDLS~N--~I~~iDESv-KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGN--LITQIDESV-KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhcccccc--chhhhhhhh-hhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 455667777766 555555554 667889999999998877654 8888999999999998776332 34678888999
Q ss_pred cccCCCCccchhhhccccCcEEeccCcchhhccch-hHHhhhccccccccCCCccc
Q 000679 612 FRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAP-NVISKLSRLEELYMGDSFSQ 666 (1355)
Q Consensus 612 L~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~~ 666 (1355)
|++|.+..+. ++++|++|..||++++ .+..+.. ..||+|+-|+++.+.+|.+.
T Consensus 359 La~N~iE~LS-GL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 359 LAQNKIETLS-GLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhhHhhhh-hhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCcc
Confidence 9999888775 6889999999999984 4555431 23889999999998887653
No 84
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=7.6e-05 Score=85.88 Aligned_cols=172 Identities=13% Similarity=0.097 Sum_probs=103.4
Q ss_pred cccchhHHHHHHHHHHhhcCC----------ceEEEEEecCCCcHHHHHHHHHHHHhhh-------------------cC
Q 000679 156 EQFDSRMKIFQNIMEVLKDTN----------VGMIGVYGVNGVGKTTLVKQIAMQVIED-------------------KL 206 (1355)
Q Consensus 156 ~~~~gr~~~~~~l~~~L~~~~----------~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~ 206 (1355)
..++|-+..++.|..++..+. ...+.++|+.|+|||++|..++...--. .|
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 357799999999998887543 4568899999999999999998865321 11
Q ss_pred CCEEEEEEeC-CCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHh----cCCeEEEEEeCccccc--cccccCCCC
Q 000679 207 FDKVVFVEVT-QTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPF 279 (1355)
Q Consensus 207 F~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~~~~~~ 279 (1355)
.|. .++... ....++ .++.+.+.+. .+++-++|+|+++... ..+.+...+
T Consensus 85 pD~-~~i~~~~~~i~i~----------------------~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~L 141 (394)
T PRK07940 85 PDV-RVVAPEGLSIGVD----------------------EVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAV 141 (394)
T ss_pred CCE-EEeccccccCCHH----------------------HHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHh
Confidence 121 112111 111111 1223333222 1355588889998762 233333322
Q ss_pred CCccccCCCCCCCcEEEEEeCch-hhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH
Q 000679 280 GDVKKERNDDRSRCTVLLTSRNR-DVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPV 358 (1355)
Q Consensus 280 ~~~~~~~~~~~~~s~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL 358 (1355)
.. ...+..+|++|.+. .+..........+.+.+++.++..+.+.+..+. . .+.+..+++.++|.|.
T Consensus 142 Ee-------p~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~---~---~~~a~~la~~s~G~~~ 208 (394)
T PRK07940 142 EE-------PPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV---D---PETARRAARASQGHIG 208 (394)
T ss_pred hc-------CCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC---C---HHHHHHHHHHcCCCHH
Confidence 22 33455566555553 443222333468999999999999888754321 1 3457789999999997
Q ss_pred HHHHH
Q 000679 359 AIKTI 363 (1355)
Q Consensus 359 ai~~~ 363 (1355)
....+
T Consensus 209 ~A~~l 213 (394)
T PRK07940 209 RARRL 213 (394)
T ss_pred HHHHH
Confidence 55433
No 85
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.05 E-value=7.3e-05 Score=79.63 Aligned_cols=173 Identities=17% Similarity=0.278 Sum_probs=105.1
Q ss_pred cccchhHHHH---HHHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhh
Q 000679 156 EQFDSRMKIF---QNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDL 232 (1355)
Q Consensus 156 ~~~~gr~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 232 (1355)
.++||.+..+ --|.+++.++....+.+||++|+||||||+.+....+... ..||..|....-..-.+.|.++.
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~a 213 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQA 213 (554)
T ss_pred HHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHH
Confidence 3445544433 2344555678889999999999999999999998765322 56788876554433444444432
Q ss_pred ccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCcccc--ccccccCCCCCCccccCCCCCCCcEEEE--EeCchhhh--h
Q 000679 233 ELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLL--TSRNRDVL--C 306 (1355)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~s~ilv--TtR~~~v~--~ 306 (1355)
.. ...+. ++|..|.+|.|..- .+-+.+ .| . ..+|..++| ||.++... .
T Consensus 214 q~---------------~~~l~-krkTilFiDEiHRFNksQQD~f-LP--~-------VE~G~I~lIGATTENPSFqln~ 267 (554)
T KOG2028|consen 214 QN---------------EKSLT-KRKTILFIDEIHRFNKSQQDTF-LP--H-------VENGDITLIGATTENPSFQLNA 267 (554)
T ss_pred HH---------------HHhhh-cceeEEEeHHhhhhhhhhhhcc-cc--e-------eccCceEEEecccCCCccchhH
Confidence 11 11122 48899999999654 233333 22 2 456665555 67666321 1
Q ss_pred hcCCCcceEecCCCCHHHHHHHHHHHh---CC------CCCCc---chHHHHHHHHHHhCCChH
Q 000679 307 NDMNSQKFFLIEVLSYEEAWCLFEKIV---GD------SAKAS---DFRVIADEIVRRCGGLPV 358 (1355)
Q Consensus 307 ~~~~~~~~~~l~~L~~~~~~~lf~~~~---~~------~~~~~---~~~~~~~~i~~~c~glPL 358 (1355)
.......++.+++|+.++-..++.+.. ++ ..+++ -...+.+-++..|.|-.-
T Consensus 268 aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 268 ALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred HHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 124445789999999999999988754 21 11121 123455666777777653
No 86
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.05 E-value=2.4e-05 Score=96.68 Aligned_cols=171 Identities=22% Similarity=0.292 Sum_probs=98.8
Q ss_pred cCCccccchhHHHHH---HHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCC-CHHHHHHH
Q 000679 152 YTAYEQFDSRMKIFQ---NIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP-DLQTIQNK 227 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~ 227 (1355)
|....+|+|++..+. .+...+..+....+.++|++|+||||+|+.+++... .+| +.++... .+.++
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~--~~f-----~~lna~~~~i~di--- 93 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR--AHF-----SSLNAVLAGVKDL--- 93 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc--Ccc-----eeehhhhhhhHHH---
Confidence 344556889888774 455666666777889999999999999999998753 334 1111110 11111
Q ss_pred HHHhhccccccCCCHHHHHHHHHHHHh-cCCeEEEEEeCcccc--ccccccCCCCCCccccCCCCCCCcEEEEE--eCch
Q 000679 228 LSSDLELEFKQNENVFQRAEKLRQRLK-NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLT--SRNR 302 (1355)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~s~ilvT--tR~~ 302 (1355)
.+......+.+. .+++.+||+|||+.. ..++.+... ...|..++|+ |.+.
T Consensus 94 ---------------r~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~----------lE~g~IiLI~aTTenp 148 (725)
T PRK13341 94 ---------------RAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPW----------VENGTITLIGATTENP 148 (725)
T ss_pred ---------------HHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHH----------hcCceEEEEEecCCCh
Confidence 111112222221 136779999999764 334444321 2235555553 4443
Q ss_pred h--hhhhcCCCcceEecCCCCHHHHHHHHHHHhCC------CCCCcchHHHHHHHHHHhCCCh
Q 000679 303 D--VLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGD------SAKASDFRVIADEIVRRCGGLP 357 (1355)
Q Consensus 303 ~--v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~------~~~~~~~~~~~~~i~~~c~glP 357 (1355)
. +..........+.+++++.++...++.+.+.. .....--++....|++.+.|..
T Consensus 149 ~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 149 YFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred HhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 1 21111222457999999999999999887631 1111122455677888887764
No 87
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.05 E-value=4.5e-05 Score=82.21 Aligned_cols=168 Identities=13% Similarity=0.129 Sum_probs=100.1
Q ss_pred HHHHHHHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCC
Q 000679 162 MKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNEN 241 (1355)
Q Consensus 162 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~ 241 (1355)
...+..+.++......+.+.|+|+.|+|||+||+.+++....+ -..+.|+++.....
T Consensus 30 ~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~--------------------- 86 (235)
T PRK08084 30 DSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW--------------------- 86 (235)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh---------------------
Confidence 3345555555555555789999999999999999999876532 34566776532100
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEeCcccc---ccccccC-CCCCCccccCCCCCCCcEEEEEeCchhhh--------hhcC
Q 000679 242 VFQRAEKLRQRLKNVKRVLVILDNIWKL---LNLDAVG-IPFGDVKKERNDDRSRCTVLLTSRNRDVL--------CNDM 309 (1355)
Q Consensus 242 ~~~~~~~l~~~l~~~k~~LlvlDdv~~~---~~~~~~~-~~~~~~~~~~~~~~~~s~ilvTtR~~~v~--------~~~~ 309 (1355)
....+.+.+. +--+|++||+... ..|+... ..+.. .. ...+.++|+||+...-. ...+
T Consensus 87 ---~~~~~~~~~~--~~dlliiDdi~~~~~~~~~~~~lf~l~n~----~~-e~g~~~li~ts~~~p~~l~~~~~~L~SRl 156 (235)
T PRK08084 87 ---FVPEVLEGME--QLSLVCIDNIECIAGDELWEMAIFDLYNR----IL-ESGRTRLLITGDRPPRQLNLGLPDLASRL 156 (235)
T ss_pred ---hhHHHHHHhh--hCCEEEEeChhhhcCCHHHHHHHHHHHHH----HH-HcCCCeEEEeCCCChHHcCcccHHHHHHH
Confidence 0011222232 2247899999764 2343211 11111 00 12234789998865221 1134
Q ss_pred CCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 000679 310 NSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 363 (1355)
Q Consensus 310 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 363 (1355)
....+++++++++++-.+++++++.... -.--+++..-|++++.|..-++..+
T Consensus 157 ~~g~~~~l~~~~~~~~~~~l~~~a~~~~-~~l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 157 DWGQIYKLQPLSDEEKLQALQLRARLRG-FELPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred hCCceeeecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhhcCCHHHHHHH
Confidence 4457899999999999999988773321 1222567788888888766555444
No 88
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=6.2e-05 Score=90.86 Aligned_cols=197 Identities=11% Similarity=0.119 Sum_probs=108.6
Q ss_pred cCCccccchhHHHHHHHHHHhhcCCc-eEEEEEecCCCcHHHHHHHHHHHHhhhcCC--CEEEEEEeCCCCCHHHHHHHH
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDKLF--DKVVFVEVTQTPDLQTIQNKL 228 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~i 228 (1355)
|....+++|-+..++.|.+++..+.. ..+-++|+.|+||||+|+.+++..-..... .+... .....-...+.|
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i 87 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDI 87 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHH
Confidence 34456788988888999998886655 566899999999999999998765321100 00000 001111111111
Q ss_pred HHhhcccc---cc-CCCHHHHHHHHHHHHh----cCCeEEEEEeCcccc--ccccccCCCCCCccccCCCCCCCcEEEEE
Q 000679 229 SSDLELEF---KQ-NENVFQRAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLT 298 (1355)
Q Consensus 229 ~~~l~~~~---~~-~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~s~ilvT 298 (1355)
...-..+. +. .....+.+..+.+... .++.-++|+|+|+.. ..++.+...+.. -....++|++
T Consensus 88 ~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEE-------PP~~~~fIL~ 160 (618)
T PRK14951 88 DSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEE-------PPEYLKFVLA 160 (618)
T ss_pred HcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhccc-------CCCCeEEEEE
Confidence 11000000 00 0011111222222221 135558899999876 345554443332 3345555555
Q ss_pred e-CchhhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHH
Q 000679 299 S-RNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAI 360 (1355)
Q Consensus 299 t-R~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 360 (1355)
| ....+..........+++++++.++..+.+.+.+......- -.+....|++.++|.+--+
T Consensus 161 Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i-e~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 161 TTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA-EPQALRLLARAARGSMRDA 222 (618)
T ss_pred ECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 4 44444322233457899999999999999988774322211 1345778899999977444
No 89
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=0.00013 Score=82.76 Aligned_cols=200 Identities=11% Similarity=0.125 Sum_probs=116.3
Q ss_pred ccCCccccchhHHHHHHHHHHhhcCCc-eEEEEEecCCCcHHHHHHHHHHHHhhhcC--CCEEEEEEeCCCCCHHHHHHH
Q 000679 151 SYTAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDKL--FDKVVFVEVTQTPDLQTIQNK 227 (1355)
Q Consensus 151 ~~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~s~~~~~~~~~~~ 227 (1355)
.|.....++|.++..+.+...+..+.. ..+.|+|+.|+||||+|..+++..-.... +... ............+.
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~ 94 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQ 94 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHH
Confidence 355666788999999999998876654 46899999999999999999988643110 1111 00111111223333
Q ss_pred HHHhhcc-------cccc------CCCHHHHHHHHHHHHh----cCCeEEEEEeCccccc--cccccCCCCCCccccCCC
Q 000679 228 LSSDLEL-------EFKQ------NENVFQRAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERND 288 (1355)
Q Consensus 228 i~~~l~~-------~~~~------~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~ 288 (1355)
+...-.. +.+. ..-..+.+..+.+.+. .+++-++|+|+++... ..+.+...+..
T Consensus 95 i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEE------- 167 (351)
T PRK09112 95 IAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE------- 167 (351)
T ss_pred HHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhc-------
Confidence 3322110 0000 0111334455555554 2466789999998763 23333322222
Q ss_pred CCCCcE-EEEEeCchhhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 000679 289 DRSRCT-VLLTSRNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 363 (1355)
Q Consensus 289 ~~~~s~-ilvTtR~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 363 (1355)
...+.. |++|++...+..........+++.+++.++..+++.+...... --.+.+..|++.++|.|.....+
T Consensus 168 pp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~---~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 168 PPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG---SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred CCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 223344 4455444333321222346899999999999999987432211 11345778999999999865543
No 90
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=8.1e-05 Score=84.95 Aligned_cols=200 Identities=11% Similarity=0.033 Sum_probs=114.4
Q ss_pred cCCccccchhHHHHHHHHHHhhcCCc-eEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEE-E--EEeCCCCCHHHHHHH
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVV-F--VEVTQTPDLQTIQNK 227 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-w--v~~s~~~~~~~~~~~ 227 (1355)
|.....++|.++.++.+.+.+..+.. ..+.++|+.|+||+|+|..+++..--+....... - ...-.........+.
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~ 94 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARR 94 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHH
Confidence 44556788999999999998887654 4688999999999999999998764322110000 0 000000000111222
Q ss_pred HHHhhcccc-------cc------CCCHHHHHHHHHHHHh----cCCeEEEEEeCccccc--cccccCCCCCCccccCCC
Q 000679 228 LSSDLELEF-------KQ------NENVFQRAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERND 288 (1355)
Q Consensus 228 i~~~l~~~~-------~~------~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~ 288 (1355)
|...-..+. ++ ..-..+.++.+.+.+. .+++-++|+||++..+ ..+.+...+..
T Consensus 95 i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEe------- 167 (365)
T PRK07471 95 IAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEE------- 167 (365)
T ss_pred HHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhc-------
Confidence 211110000 00 0112334555555543 2466789999998663 33444333322
Q ss_pred CCCCcEEEEEeCch-hhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 000679 289 DRSRCTVLLTSRNR-DVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 363 (1355)
Q Consensus 289 ~~~~s~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 363 (1355)
-..++.+|++|.+. .+..........+.+.+++.++..+++.+..+... .+....+++.++|.|..+..+
T Consensus 168 pp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-----~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 168 PPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-----DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred CCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-----HHHHHHHHHHcCCCHHHHHHH
Confidence 33456667766665 33322233456899999999999999987653211 122267899999999865444
No 91
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=8.4e-05 Score=87.11 Aligned_cols=182 Identities=12% Similarity=0.135 Sum_probs=110.2
Q ss_pred cCCccccchhHHHHHHHHHHhhcCCce-EEEEEecCCCcHHHHHHHHHHHHhhh-------------------cCCCEEE
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLKDTNVG-MIGVYGVNGVGKTTLVKQIAMQVIED-------------------KLFDKVV 211 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~ 211 (1355)
|....+++|.+..++.+.+++..+... .+-++|+.|+||||+|+.++...... ..+..++
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ 88 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVI 88 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEE
Confidence 344567889998888888888766654 78899999999999999998753210 1122234
Q ss_pred EEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCccccc--cccccCCCCCCccccCCCC
Q 000679 212 FVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDD 289 (1355)
Q Consensus 212 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~ 289 (1355)
.++.+....++++. .+........ . .+++-++|+|+++... ..+.+...+.. -
T Consensus 89 eidaas~~~vddIR-~Iie~~~~~P----------------~-~~~~KVvIIDEah~Ls~~A~NaLLK~LEe-------P 143 (491)
T PRK14964 89 EIDAASNTSVDDIK-VILENSCYLP----------------I-SSKFKVYIIDEVHMLSNSAFNALLKTLEE-------P 143 (491)
T ss_pred EEecccCCCHHHHH-HHHHHHHhcc----------------c-cCCceEEEEeChHhCCHHHHHHHHHHHhC-------C
Confidence 44444333443322 2222111000 0 1356689999997653 34444333332 3
Q ss_pred CCCcEEEEEe-CchhhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHH
Q 000679 290 RSRCTVLLTS-RNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVA 359 (1355)
Q Consensus 290 ~~~s~ilvTt-R~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 359 (1355)
...+++|++| ....+..........+.+.+++.++..+.+.+.+......- -.+....|++.++|.+-.
T Consensus 144 p~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i-~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 144 APHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH-DEESLKLIAENSSGSMRN 213 (491)
T ss_pred CCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHH
Confidence 3456665555 44444432233457899999999999999988774322211 134567899999987754
No 92
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.02 E-value=0.00012 Score=85.46 Aligned_cols=184 Identities=13% Similarity=0.175 Sum_probs=108.5
Q ss_pred CCccccchhHHHHHHHHHHhhcCCc-eEEEEEecCCCcHHHHHHHHHHHHhhh--------------------cCCCEEE
Q 000679 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIED--------------------KLFDKVV 211 (1355)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~ 211 (1355)
.....++|.+..++.+.+++..+.. ..+-++|+.|+||||+|+.++...... .+++. +
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~ 89 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-I 89 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-E
Confidence 4455678999999999999876554 467899999999999999999875321 12222 2
Q ss_pred EEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCcccc--ccccccCCCCCCccccCCCC
Q 000679 212 FVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDD 289 (1355)
Q Consensus 212 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~ 289 (1355)
+++.+......+ .+.+...+.... . .+++-++|+|+++.. ...+.+...+.. .
T Consensus 90 ~~~~~~~~~~~~-~~~l~~~~~~~p----------------~-~~~~~vviidea~~l~~~~~~~Ll~~le~-------~ 144 (355)
T TIGR02397 90 EIDAASNNGVDD-IREILDNVKYAP----------------S-SGKYKVYIIDEVHMLSKSAFNALLKTLEE-------P 144 (355)
T ss_pred EeeccccCCHHH-HHHHHHHHhcCc----------------c-cCCceEEEEeChhhcCHHHHHHHHHHHhC-------C
Confidence 332221111111 112222111000 1 135558889998655 233443333322 3
Q ss_pred CCCcEEEEEeCchh-hhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 000679 290 RSRCTVLLTSRNRD-VLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 363 (1355)
Q Consensus 290 ~~~s~ilvTtR~~~-v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 363 (1355)
...+.+|++|.+.. +..........+++.++++++..+.+...+...... --.+.+..+++.++|.|..+.-.
T Consensus 145 ~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~-i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 145 PEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK-IEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred ccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCChHHHHHH
Confidence 34566666665443 222122334678899999999999998877322211 11356788999999998655444
No 93
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.01 E-value=9.8e-05 Score=76.99 Aligned_cols=160 Identities=18% Similarity=0.172 Sum_probs=92.4
Q ss_pred HHHHHhhcCCc-eEEEEEecCCCcHHHHHHHHHHHHhhh--------------------cCCCEEEEEEeC-CCCCHHHH
Q 000679 167 NIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIED--------------------KLFDKVVFVEVT-QTPDLQTI 224 (1355)
Q Consensus 167 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~~s-~~~~~~~~ 224 (1355)
.+.+.+..++. ..+.++|+.|+||||+|+.+....... .+.|.. ++... ....++++
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~-~~~~~~~~~~~~~i 81 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLH-RLEPEGQSIKVDQV 81 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEE-EeccccCcCCHHHH
Confidence 34455555554 678999999999999999998886432 122222 22111 11122111
Q ss_pred HHHHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCccccc--cccccCCCCCCccccCCCCCCCcEEEEEeCch
Q 000679 225 QNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSRNR 302 (1355)
Q Consensus 225 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~ 302 (1355)
+++.+.+.... . .+.+-++|+||++... .++.+...+.. ....+.+|++|++.
T Consensus 82 -~~i~~~~~~~~----------------~-~~~~kviiide~~~l~~~~~~~Ll~~le~-------~~~~~~~il~~~~~ 136 (188)
T TIGR00678 82 -RELVEFLSRTP----------------Q-ESGRRVVIIEDAERMNEAAANALLKTLEE-------PPPNTLFILITPSP 136 (188)
T ss_pred -HHHHHHHccCc----------------c-cCCeEEEEEechhhhCHHHHHHHHHHhcC-------CCCCeEEEEEECCh
Confidence 11222111100 0 1366689999987652 34444333332 33455666666544
Q ss_pred -hhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHH
Q 000679 303 -DVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVA 359 (1355)
Q Consensus 303 -~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 359 (1355)
.+..........+.+.+++.++..+.+.+. + .. .+.+..|++.++|.|..
T Consensus 137 ~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~-g--i~----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 137 EKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ-G--IS----EEAAELLLALAGGSPGA 187 (188)
T ss_pred HhChHHHHhhcEEeeCCCCCHHHHHHHHHHc-C--CC----HHHHHHHHHHcCCCccc
Confidence 222212223468999999999998888876 2 11 45688999999998853
No 94
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.00 E-value=1.5e-05 Score=89.09 Aligned_cols=93 Identities=18% Similarity=0.227 Sum_probs=65.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCC--CCHHHHHHHHHHhhccccccCCC--HHH----HHH
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQT--PDLQTIQNKLSSDLELEFKQNEN--VFQ----RAE 247 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~--~~~----~~~ 247 (1355)
....++|+|++|+|||||++.+++....+ +|+..+||.+.+. .++.++++.+...+-...-+... ... ..+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 34689999999999999999999987654 8999999999966 68999999995443222211111 111 122
Q ss_pred HHHHHHhcCCeEEEEEeCcccc
Q 000679 248 KLRQRLKNVKRVLVILDNIWKL 269 (1355)
Q Consensus 248 ~l~~~l~~~k~~LlvlDdv~~~ 269 (1355)
.......+|++++|++|++...
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHH
Confidence 2223334579999999999654
No 95
>PLN03150 hypothetical protein; Provisional
Probab=98.00 E-value=1.1e-05 Score=100.15 Aligned_cols=109 Identities=19% Similarity=0.287 Sum_probs=90.7
Q ss_pred ceEEEEeeccCCCCcccChhhhcCCCcceEEEecCCCcc-ccCcccccccCCcEEEecCCCCCC--ccccccccccceee
Q 000679 535 KLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFL-SLPSSLVCLISLRTLSLEGCQVGD--VAIVGQLKKLEILS 611 (1355)
Q Consensus 535 ~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~~~-~lp~~i~~L~~Lr~L~L~~~~i~~--p~~i~~L~~L~~L~ 611 (1355)
.++.|.+.++ .....+|.. +..+++|+.|+|++|.+. .+|..++.+.+|++|+|++|.+.. |..+++|.+|++|+
T Consensus 419 ~v~~L~L~~n-~L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQ-GLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCC-CccccCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence 4777887776 344567776 489999999999999997 589999999999999999999986 89999999999999
Q ss_pred cccCCCC-ccchhhhcc-ccCcEEeccCcchhhccc
Q 000679 612 FRNSDIQ-QLPREIGQL-VQLRLLDLRNCRRLQAIA 645 (1355)
Q Consensus 612 L~~~~l~-~lP~~i~~L-~~L~~L~l~~~~~l~~~p 645 (1355)
|++|.+. .+|..++.+ .++..+++.+|..+...|
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 9999876 899988764 577888888866544433
No 96
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=5.9e-05 Score=91.17 Aligned_cols=197 Identities=12% Similarity=0.125 Sum_probs=109.4
Q ss_pred cCCccccchhHHHHHHHHHHhhcCCc-eEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHH
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSS 230 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 230 (1355)
|....+++|.+..++.|...+..+.. ..+.++|+.|+||||+|+.+++..-....+. ......-...+.|..
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~~ 84 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIEQ 84 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHHc
Confidence 34556788999999999888876655 3468999999999999999998764211100 000011111111111
Q ss_pred hhcccc---ccC-CCHHHHHHHHHHHHh----cCCeEEEEEeCccccc--cccccCCCCCCccccCCCCCCCcEEEE-Ee
Q 000679 231 DLELEF---KQN-ENVFQRAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLL-TS 299 (1355)
Q Consensus 231 ~l~~~~---~~~-~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilv-Tt 299 (1355)
.-..+. +.. ....+.++.+.+.+. .+++-++|+|+++... ..+.+...+-. -....++|+ ||
T Consensus 85 g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEE-------Pp~~v~FIL~Tt 157 (647)
T PRK07994 85 GRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-------PPEHVKFLLATT 157 (647)
T ss_pred CCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHc-------CCCCeEEEEecC
Confidence 000000 000 011111222222221 2466799999998763 34444333322 233445544 44
Q ss_pred CchhhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHH-HHHH
Q 000679 300 RNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVA-IKTI 363 (1355)
Q Consensus 300 R~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLa-i~~~ 363 (1355)
....+..........|.+.+++.++..+.+.+.+...... .-.+....|++.++|.+-. +.++
T Consensus 158 ~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~-~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 158 DPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIP-FEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred CccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4444432122235789999999999999998876322211 1234567899999998864 4443
No 97
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.99 E-value=4.1e-05 Score=81.24 Aligned_cols=164 Identities=17% Similarity=0.171 Sum_probs=95.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcC
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNV 256 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (1355)
...+.|+|..|+|||.|.+++++.......=..++|++ ..+....+...+... ....+++.+.
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~---------~~~~~~~~~~-- 96 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRDG---------EIEEFKDRLR-- 96 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHTT---------SHHHHHHHHC--
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHcc---------cchhhhhhhh--
Confidence 35689999999999999999999876433323566774 455566665554321 1234555555
Q ss_pred CeEEEEEeCcccccc---ccccCCCCCCccccCCCCCCCcEEEEEeCchhhhh--------hcCCCcceEecCCCCHHHH
Q 000679 257 KRVLVILDNIWKLLN---LDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLC--------NDMNSQKFFLIEVLSYEEA 325 (1355)
Q Consensus 257 k~~LlvlDdv~~~~~---~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~--------~~~~~~~~~~l~~L~~~~~ 325 (1355)
.-=+|++||++.... |.... -.+++.+ ...|-+||+|++.....- ..+...-++++++++.++-
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~l---f~l~n~~--~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r 171 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEEL---FHLFNRL--IESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDR 171 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHH---HHHHHHH--HHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHH
T ss_pred cCCEEEEecchhhcCchHHHHHH---HHHHHHH--HhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHH
Confidence 455889999977632 22211 1111111 234668999996653211 1233456899999999999
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 000679 326 WCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 363 (1355)
Q Consensus 326 ~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 363 (1355)
.+++++++...... --+++++-|++.+.+..-.+.-+
T Consensus 172 ~~il~~~a~~~~~~-l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 172 RRILQKKAKERGIE-LPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHHHHHHHTT---S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CcHHHHHHHHHhhcCCHHHHHHH
Confidence 99999988431111 22566777777776655544433
No 98
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=6.6e-05 Score=87.82 Aligned_cols=201 Identities=16% Similarity=0.181 Sum_probs=110.7
Q ss_pred cCCccccchhHHHHHHHHHHhhcCCce-EEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEE-eCCCCCHHHHHHHHH
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLKDTNVG-MIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVE-VTQTPDLQTIQNKLS 229 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-~s~~~~~~~~~~~i~ 229 (1355)
|.....++|.+..++.|..++..+..+ .+.++|+.|+||||+|..+++...-...++...|.. .......-...+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~ 91 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFD 91 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHh
Confidence 344556889999999998888876654 488999999999999999998774321111111110 001111111111111
Q ss_pred Hhhcccc---cc-CCCHHHHHHHHHHHHh----cCCeEEEEEeCccccc--cccccCCCCCCccccCCCCCCCcEEEEEe
Q 000679 230 SDLELEF---KQ-NENVFQRAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTS 299 (1355)
Q Consensus 230 ~~l~~~~---~~-~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTt 299 (1355)
.....+. +. .....+.+..+.+.+. .+++-++|+|+++... .++.+...+.+ ....+.+|++|
T Consensus 92 ~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEe-------p~~~t~~Il~t 164 (397)
T PRK14955 92 AGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEE-------PPPHAIFIFAT 164 (397)
T ss_pred cCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhc-------CCCCeEEEEEe
Confidence 1110000 00 0011222333334432 1356688999997653 45555443333 34455655554
Q ss_pred -CchhhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHH
Q 000679 300 -RNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAI 360 (1355)
Q Consensus 300 -R~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 360 (1355)
+...+..........+++.++++++..+.+.+.+..... .--.+.+..|++.++|.+--+
T Consensus 165 ~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~-~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 165 TELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI-SVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred CChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 434333211222457899999999998888887632211 112456788999999987533
No 99
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=5.6e-05 Score=90.73 Aligned_cols=179 Identities=11% Similarity=0.176 Sum_probs=105.6
Q ss_pred cCCccccchhHHHHHHHHHHhhcCCc-eEEEEEecCCCcHHHHHHHHHHHHhhhcC-------------------CCEEE
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDKL-------------------FDKVV 211 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~ 211 (1355)
|....+++|.+..++.|..++..++. ..+.++|+.|+||||+|+.+++....... |-.++
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dvl 91 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLL 91 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceE
Confidence 44556789999999999999886654 46799999999999999999886532111 11112
Q ss_pred EEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHH----hcCCeEEEEEeCcccccc--ccccCCCCCCcccc
Q 000679 212 FVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRL----KNVKRVLVILDNIWKLLN--LDAVGIPFGDVKKE 285 (1355)
Q Consensus 212 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~k~~LlvlDdv~~~~~--~~~~~~~~~~~~~~ 285 (1355)
.++.+....++ .++.+.+.. ..+++-++|+|+++.... .+.+...+..
T Consensus 92 EidaAs~~gVd----------------------~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEE---- 145 (709)
T PRK08691 92 EIDAASNTGID----------------------NIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEE---- 145 (709)
T ss_pred EEeccccCCHH----------------------HHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHh----
Confidence 22222222221 111221111 113667899999976532 3333222222
Q ss_pred CCCCCCCcEEEEEeCch-hhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHH
Q 000679 286 RNDDRSRCTVLLTSRNR-DVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAI 360 (1355)
Q Consensus 286 ~~~~~~~s~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 360 (1355)
....+++|++|.+. .+..........+.+.+++.++....+.+.+......- -.+....|++.++|.+.-+
T Consensus 146 ---Pp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i-d~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 146 ---PPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY-EPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred ---CCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHhCCCHHHH
Confidence 23455666666443 22211122235678889999999999888774322111 2345788999999988443
No 100
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=2.2e-06 Score=93.52 Aligned_cols=183 Identities=20% Similarity=0.137 Sum_probs=108.9
Q ss_pred eEEEeCCCCCCCCCC---CccCCCceEEEEeeccCCCCcccChhhhcCCCcceEEEecCCCccccCcc--cccccCCcEE
Q 000679 514 SIAISLPNRDIDELP---ERLECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSS--LVCLISLRTL 588 (1355)
Q Consensus 514 ~r~lsl~~~~~~~l~---~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~~~~lp~~--i~~L~~Lr~L 588 (1355)
.|.+++.++.+...+ ....|+++|.|.++.+-......--.+...+++|+.|+++.|.+...-++ -..+.||+.|
T Consensus 123 L~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L 202 (505)
T KOG3207|consen 123 LREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQL 202 (505)
T ss_pred hhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheE
Confidence 566677766665554 23468888888887761111111123457788888888888876543222 1356788888
Q ss_pred EecCCCCCC---ccccccccccceeecccC-CCCccchhhhccccCcEEeccCcchhhccc-hhHHhhhccccccccCCC
Q 000679 589 SLEGCQVGD---VAIVGQLKKLEILSFRNS-DIQQLPREIGQLVQLRLLDLRNCRRLQAIA-PNVISKLSRLEELYMGDS 663 (1355)
Q Consensus 589 ~L~~~~i~~---p~~i~~L~~L~~L~L~~~-~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p-~~~i~~L~~L~~L~l~~~ 663 (1355)
.|++|.++. -...-.+++|+.|+|.+| .+..--.+...+..|+.|||++++ +..++ .-.++.++.|+.|++..+
T Consensus 203 ~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 203 VLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred EeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhhhcccc
Confidence 888888774 234456778888888887 333222334456778888888854 44444 112677888888887776
Q ss_pred ccccccccCCCccchhhhcCCCCCCeEEEEeccccC
Q 000679 664 FSQWEKVEGGSNASLVELKGLSKLTTLEIHIRDARI 699 (1355)
Q Consensus 664 ~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~ 699 (1355)
.+..-... +.......-...+|+.|.+..|.+..
T Consensus 282 gi~si~~~--d~~s~~kt~~f~kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 282 GIASIAEP--DVESLDKTHTFPKLEYLNISENNIRD 315 (505)
T ss_pred CcchhcCC--CccchhhhcccccceeeecccCcccc
Confidence 55310000 11112223455677777777665543
No 101
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=7.9e-05 Score=89.02 Aligned_cols=183 Identities=13% Similarity=0.176 Sum_probs=108.2
Q ss_pred cCCccccchhHHHHHHHHHHhhcCCce-EEEEEecCCCcHHHHHHHHHHHHhhhc-------------------CCCEEE
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLKDTNVG-MIGVYGVNGVGKTTLVKQIAMQVIEDK-------------------LFDKVV 211 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~ 211 (1355)
|....+++|-+..++.|..++..+... .+.++|+.|+||||+|+.+++..-... .|..++
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ 91 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLF 91 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEE
Confidence 345567889999999999999866554 578999999999999999998763221 121233
Q ss_pred EEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCcccc--ccccccCCCCCCccccCCCC
Q 000679 212 FVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDD 289 (1355)
Q Consensus 212 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~ 289 (1355)
.++.+....++++. ++++.+... -..++.-++|+|+|+.. ...+.+...+.. .
T Consensus 92 eidaas~~~v~~iR-~l~~~~~~~-----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEe-------p 146 (509)
T PRK14958 92 EVDAASRTKVEDTR-ELLDNIPYA-----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEE-------P 146 (509)
T ss_pred EEcccccCCHHHHH-HHHHHHhhc-----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhc-------c
Confidence 33333223333321 222221110 01246668999999875 334444333332 3
Q ss_pred CCCcEEEEEeCc-hhhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHH
Q 000679 290 RSRCTVLLTSRN-RDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAI 360 (1355)
Q Consensus 290 ~~~s~ilvTtR~-~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 360 (1355)
...+++|++|.+ ..+..........+++++++.++....+.+.+......- -.+....|++.++|.+--+
T Consensus 147 p~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~-~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 147 PSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF-ENAALDLLARAANGSVRDA 217 (509)
T ss_pred CCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHH
Confidence 345666655543 333321222345788999999988877776663322211 1344678889999987543
No 102
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.96 E-value=7.5e-06 Score=66.92 Aligned_cols=60 Identities=23% Similarity=0.361 Sum_probs=54.0
Q ss_pred CceEEEEeeccCCCCcccChhhhcCCCcceEEEecCCCccccC-cccccccCCcEEEecCCCC
Q 000679 534 PKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLP-SSLVCLISLRTLSLEGCQV 595 (1355)
Q Consensus 534 ~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~L~~Lr~L~L~~~~i 595 (1355)
|+|+.|.+..+ ....+|...|..+++|++|++++|.+..+| ..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n--~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNN--KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSS--TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCC--CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 57889999887 777899999999999999999999999976 5789999999999999974
No 103
>PRK09087 hypothetical protein; Validated
Probab=97.96 E-value=0.00012 Score=77.88 Aligned_cols=144 Identities=15% Similarity=0.017 Sum_probs=86.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhc
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKN 255 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 255 (1355)
..+.+.|+|+.|+|||+|++.++..... .|++.. .+...+ ...+.
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~~-------~~i~~~------~~~~~~---------------------~~~~~- 87 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSDA-------LLIHPN------EIGSDA---------------------ANAAA- 87 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcCC-------EEecHH------HcchHH---------------------HHhhh-
Confidence 3467999999999999999988876421 233321 111111 11122
Q ss_pred CCeEEEEEeCccccccc-cccCCCCCCccccCCCCCCCcEEEEEeCchhhh--------hhcCCCcceEecCCCCHHHHH
Q 000679 256 VKRVLVILDNIWKLLNL-DAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVL--------CNDMNSQKFFLIEVLSYEEAW 326 (1355)
Q Consensus 256 ~k~~LlvlDdv~~~~~~-~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~--------~~~~~~~~~~~l~~L~~~~~~ 326 (1355)
.-+|++||+...... +.+... +... ...|..||+|++...-. ........++++++++.++-.
T Consensus 88 --~~~l~iDDi~~~~~~~~~lf~l----~n~~--~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~ 159 (226)
T PRK09087 88 --EGPVLIEDIDAGGFDETGLFHL----INSV--RQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLS 159 (226)
T ss_pred --cCeEEEECCCCCCCCHHHHHHH----HHHH--HhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHH
Confidence 137888999653210 111111 1111 23467799988743211 113455679999999999999
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 000679 327 CLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 363 (1355)
Q Consensus 327 ~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 363 (1355)
+++++++.... -.--+++..-|++++.|..-++..+
T Consensus 160 ~iL~~~~~~~~-~~l~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 160 QVIFKLFADRQ-LYVDPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHHHHHHHHcC-CCCCHHHHHHHHHHhhhhHHHHHHH
Confidence 99999984421 1122567888889888887766643
No 104
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.91 E-value=0.00018 Score=83.65 Aligned_cols=181 Identities=17% Similarity=0.206 Sum_probs=101.0
Q ss_pred CccccchhHHHHHHHHHHhh----c---------CCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCC
Q 000679 154 AYEQFDSRMKIFQNIMEVLK----D---------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD 220 (1355)
Q Consensus 154 ~~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 220 (1355)
...++.|+++.++++.+.+. . ...+-+.++|++|+|||++|+.+++... ..| +.+.
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~--~~~-----~~v~---- 188 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--ATF-----IRVV---- 188 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC--CCE-----Eecc----
Confidence 34467899999999988764 1 1245689999999999999999999764 222 2221
Q ss_pred HHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCcccccc--cccc-------CCCCCCccccCC--CC
Q 000679 221 LQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLN--LDAV-------GIPFGDVKKERN--DD 289 (1355)
Q Consensus 221 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~--~~~~-------~~~~~~~~~~~~--~~ 289 (1355)
..++..... + ........+.+......+.+|++||++.... .+.. ...+..++.... ..
T Consensus 189 ~~~l~~~~~---g-------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 189 GSELVRKYI---G-------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred hHHHHHHhh---h-------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 111111110 0 1112233333333334678999999976411 0000 000000000000 02
Q ss_pred CCCcEEEEEeCchhhh-hhc---CCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh
Q 000679 290 RSRCTVLLTSRNRDVL-CND---MNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLP 357 (1355)
Q Consensus 290 ~~~s~ilvTtR~~~v~-~~~---~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 357 (1355)
..+.+||.||...... ... ......+.+...+.++..++|+.++......++. ....+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCC
Confidence 3467788888754322 101 1224578999999999999999887443222211 1456777887764
No 105
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00015 Score=86.85 Aligned_cols=201 Identities=14% Similarity=0.178 Sum_probs=110.2
Q ss_pred cCCccccchhHHHHHHHHHHhhcCC-ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHH
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLKDTN-VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSS 230 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 230 (1355)
|....+++|.+..++.|..++..+. ...+.++|+.|+||||+|+.+++..-.....+. ..+..-...+.|..
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~~ 84 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVTQ 84 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHhc
Confidence 3444567898888888888887655 467888999999999999999987642111000 00111111111111
Q ss_pred hhcccc---cc-CCCHHHHHHHHHHHHh----cCCeEEEEEeCcccc--ccccccCCCCCCccccCCCCCCCcEEEEEeC
Q 000679 231 DLELEF---KQ-NENVFQRAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLTSR 300 (1355)
Q Consensus 231 ~l~~~~---~~-~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR 300 (1355)
....+. +. .....+.++.+.+.+. .+++-++|+|+++.. ..++.+...+.. ......+|++|.
T Consensus 85 g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEE-------P~~~~ifILaTt 157 (624)
T PRK14959 85 GMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEE-------PPARVTFVLATT 157 (624)
T ss_pred CCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhc-------cCCCEEEEEecC
Confidence 100000 00 0001111222222221 246678999999766 234444333322 223445555554
Q ss_pred c-hhhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh-HHHHHHHHHH
Q 000679 301 N-RDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLP-VAIKTIANAL 367 (1355)
Q Consensus 301 ~-~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~~l 367 (1355)
. ..+..........+++.+++.++....+.+.+...... --.+.++.|++.++|.+ .|+..+..++
T Consensus 158 ~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~-id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 158 EPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD-YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred ChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4 44432122234578999999999998888766332111 12355778999999965 6777766554
No 106
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=0.00019 Score=87.03 Aligned_cols=199 Identities=10% Similarity=0.120 Sum_probs=110.8
Q ss_pred cCCccccchhHHHHHHHHHHhhcCCc-eEEEEEecCCCcHHHHHHHHHHHHhhhcCCC--EEEEEEeCCCCCHHHHHHHH
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFD--KVVFVEVTQTPDLQTIQNKL 228 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~s~~~~~~~~~~~i 228 (1355)
|....+++|.+..++.|.+++..++. ..+-++|+.|+||||+|+.+++......... ...+ +....-.-.+.|
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C~~i 95 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHCQAI 95 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHHHHH
Confidence 44556789999999999999886654 4688999999999999999998763221110 0000 000111111222
Q ss_pred HHhhccccc----cCCCHHHHHHHHHHHHh----cCCeEEEEEeCccccc--cccccCCCCCCccccCCCCCCCcEEEEE
Q 000679 229 SSDLELEFK----QNENVFQRAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLT 298 (1355)
Q Consensus 229 ~~~l~~~~~----~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvT 298 (1355)
...-..+.. ......+.++.+.+.+. .+++-++|+|+++... ..+.+...+.. -...+++|++
T Consensus 96 ~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEe-------Pp~~~~fIl~ 168 (598)
T PRK09111 96 MEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEE-------PPPHVKFIFA 168 (598)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHh-------CCCCeEEEEE
Confidence 211111000 00011122223333222 1355679999997663 34444333322 3345666554
Q ss_pred e-CchhhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 000679 299 S-RNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKT 362 (1355)
Q Consensus 299 t-R~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 362 (1355)
| ....+..........+.+..++.++....+.+.+......- -.+....|++.++|.+.-+..
T Consensus 169 tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i-~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 169 TTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV-EDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred eCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHH
Confidence 4 44444321223346899999999999999988773322111 135577899999998865543
No 107
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00019 Score=86.47 Aligned_cols=187 Identities=12% Similarity=0.193 Sum_probs=107.7
Q ss_pred CCccccchhHHHHHHHHHHhhcCCc-eEEEEEecCCCcHHHHHHHHHHHHhhhc-------------------CCCEEEE
Q 000679 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDK-------------------LFDKVVF 212 (1355)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~w 212 (1355)
.....++|.+..++.+..++..+.. ..+.++|+.|+||||+|+.++....... .|...++
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~e 92 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIE 92 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeE
Confidence 4445688999999999998886655 4568999999999999999998763211 1112223
Q ss_pred EEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCccccc--cccccCCCCCCccccCCCCC
Q 000679 213 VEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDR 290 (1355)
Q Consensus 213 v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~ 290 (1355)
+..+....++++ +++...+... -..+++-++|+|+++... ..+.+...+.. ..
T Consensus 93 i~~~~~~~vd~i-r~l~~~~~~~-----------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEe-------pp 147 (527)
T PRK14969 93 VDAASNTQVDAM-RELLDNAQYA-----------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEE-------PP 147 (527)
T ss_pred eeccccCCHHHH-HHHHHHHhhC-----------------cccCCceEEEEcCcccCCHHHHHHHHHHHhC-------CC
Confidence 322222222221 1222111100 012466789999997653 24443333322 33
Q ss_pred CCcEEEEEeCc-hhhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH-HHHHHHH
Q 000679 291 SRCTVLLTSRN-RDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPV-AIKTIAN 365 (1355)
Q Consensus 291 ~~s~ilvTtR~-~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~~ 365 (1355)
..+.+|++|.+ ..+..........+++++++.++..+.+.+.+...... .-.+..+.|++.++|.+- |+..+-.
T Consensus 148 ~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~-~~~~al~~la~~s~Gslr~al~lldq 223 (527)
T PRK14969 148 EHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP-FDATALQLLARAAAGSMRDALSLLDQ 223 (527)
T ss_pred CCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45555555543 33321111224688999999999998888776332221 123456789999999774 4444433
No 108
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.88 E-value=0.00011 Score=86.68 Aligned_cols=166 Identities=16% Similarity=0.136 Sum_probs=103.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCC
Q 000679 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVK 257 (1355)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 257 (1355)
..+.|+|..|+|||.|++++++.......-..+++++ ..++...+...++... .....+.+.+. +
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~--~ 206 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEIC--Q 206 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhc--c
Confidence 5689999999999999999999765432223455554 3566667766654211 12334444444 4
Q ss_pred eEEEEEeCccccc---cc-cccCCCCCCccccCCCCCCCcEEEEEeCchhhh--------hhcCCCcceEecCCCCHHHH
Q 000679 258 RVLVILDNIWKLL---NL-DAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVL--------CNDMNSQKFFLIEVLSYEEA 325 (1355)
Q Consensus 258 ~~LlvlDdv~~~~---~~-~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~--------~~~~~~~~~~~l~~L~~~~~ 325 (1355)
.-+||+||+.... .+ +.+...+. .+ ...|..||+|+...... ...+...-++.+++++.++-
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N----~~--~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r 280 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFN----NF--IENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTA 280 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHH----HH--HHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHH
Confidence 4588999996542 12 12211111 11 23344688887644211 11233456788999999999
Q ss_pred HHHHHHHhCCCCC-CcchHHHHHHHHHHhCCChHHHHHHH
Q 000679 326 WCLFEKIVGDSAK-ASDFRVIADEIVRRCGGLPVAIKTIA 364 (1355)
Q Consensus 326 ~~lf~~~~~~~~~-~~~~~~~~~~i~~~c~glPLai~~~~ 364 (1355)
.+++++++..... ..--+++..-|++.++|.|-.+.-+.
T Consensus 281 ~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 281 TAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 9999998843221 12336788999999999997765554
No 109
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.0002 Score=86.85 Aligned_cols=204 Identities=16% Similarity=0.188 Sum_probs=109.7
Q ss_pred cCCccccchhHHHHHHHHHHhhcCCc-eEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEE-eCCCCCHHHHHHHHH
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVE-VTQTPDLQTIQNKLS 229 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-~s~~~~~~~~~~~i~ 229 (1355)
|.....++|.+..+..|..++..+.. ..+.++|+.|+||||+|+.+++..-....++.-.|-. +......-...+.+.
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~ 91 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFD 91 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHh
Confidence 34456788999999999888876655 4588999999999999999998764322111001110 001111111111111
Q ss_pred Hhhcccc---cc-CCCHHHHHHHHHHHHh----cCCeEEEEEeCccccc--cccccCCCCCCccccCCCCCCCcEEE-EE
Q 000679 230 SDLELEF---KQ-NENVFQRAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVL-LT 298 (1355)
Q Consensus 230 ~~l~~~~---~~-~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~il-vT 298 (1355)
..-..+. +. .....+.+..+.+.+. .+++-++|+|+++... ..+.+...+.. -...+.+| +|
T Consensus 92 ~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEe-------Pp~~tv~IL~t 164 (620)
T PRK14954 92 AGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEE-------PPPHAIFIFAT 164 (620)
T ss_pred ccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhC-------CCCCeEEEEEe
Confidence 1100000 00 0011222333333331 1355678999987653 24444333322 22344544 44
Q ss_pred eCchhhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH-HHHHH
Q 000679 299 SRNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPV-AIKTI 363 (1355)
Q Consensus 299 tR~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 363 (1355)
++...+..........+++.+++.++....+.+.+...... --.+.++.|++.++|..- |+..+
T Consensus 165 ~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~-I~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 165 TELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ-IDADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred CChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCHHHHHHHH
Confidence 44444432223446789999999999888887766321111 123457889999999654 44433
No 110
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.83 E-value=0.00041 Score=74.60 Aligned_cols=196 Identities=15% Similarity=0.154 Sum_probs=120.0
Q ss_pred HHHHHHHHHHhhc---CCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCC----EEEEEEeCCCCCHHHHHHHHHHhhcc
Q 000679 162 MKIFQNIMEVLKD---TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFD----KVVFVEVTQTPDLQTIQNKLSSDLEL 234 (1355)
Q Consensus 162 ~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~~s~~~~~~~~~~~i~~~l~~ 234 (1355)
.+.++++.+.+.. ...+.+.|||.+|.|||++++++....-....=+ .++.|.+...++...++..|+.+++.
T Consensus 43 ~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 43 KEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 4445666666653 3457799999999999999999998764321111 47788888999999999999999999
Q ss_pred ccccCCCHHHHHHHHHHHHhcCCeEEEEEeCccccccc-----cccCCCCCCccccCCCCCCCcEEEEEeCchhhhhhcC
Q 000679 235 EFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNL-----DAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCNDM 309 (1355)
Q Consensus 235 ~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~-----~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~~~ 309 (1355)
+...............+.++.-+-=+||+|++.+.-.. ..+...+.. +...-.-+-|.|-|+.---+- ..
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~----L~NeL~ipiV~vGt~~A~~al-~~ 197 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKF----LGNELQIPIVGVGTREAYRAL-RT 197 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHH----HhhccCCCeEEeccHHHHHHh-cc
Confidence 87665566555555556666546668999999775211 111111111 000223345666666543321 11
Q ss_pred C-----CcceEecCCCCHH-HHHHHHHHHhC----CCCCCcchHHHHHHHHHHhCCChHHHHH
Q 000679 310 N-----SQKFFLIEVLSYE-EAWCLFEKIVG----DSAKASDFRVIADEIVRRCGGLPVAIKT 362 (1355)
Q Consensus 310 ~-----~~~~~~l~~L~~~-~~~~lf~~~~~----~~~~~~~~~~~~~~i~~~c~glPLai~~ 362 (1355)
+ -...+.+..-..+ |...|+..... .....-...++++.|...++|+.--+.-
T Consensus 198 D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 198 DPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred CHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHH
Confidence 1 1345666655544 44445443331 1122223467899999999998755433
No 111
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00035 Score=81.55 Aligned_cols=182 Identities=12% Similarity=0.192 Sum_probs=103.3
Q ss_pred cCCccccchhHHHHHHHHHHhhcCCc-eEEEEEecCCCcHHHHHHHHHHHHhhh------cCCCE-EEEEEeCCCCCHHH
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIED------KLFDK-VVFVEVTQTPDLQT 223 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~------~~F~~-~~wv~~s~~~~~~~ 223 (1355)
|.....++|.+..++.+.+++..+.. +.+.++|+.|+||||+|+.+++..... ..|.. ++.+......++.+
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 92 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD 92 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH
Confidence 34455678999999999999886554 478899999999999999998875321 11211 11111111111111
Q ss_pred HHHHHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCccccc--cccccCCCCCCccccCCCCCCCcEEEEEe-C
Q 000679 224 IQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTS-R 300 (1355)
Q Consensus 224 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTt-R 300 (1355)
+. .+++++... -.. +++-++|+|+++... .++.+...+.. ....+.+|++| +
T Consensus 93 i~-~l~~~~~~~----------------p~~-~~~kiviIDE~~~l~~~~~~~ll~~le~-------~~~~~~~Il~~~~ 147 (367)
T PRK14970 93 IR-NLIDQVRIP----------------PQT-GKYKIYIIDEVHMLSSAAFNAFLKTLEE-------PPAHAIFILATTE 147 (367)
T ss_pred HH-HHHHHHhhc----------------ccc-CCcEEEEEeChhhcCHHHHHHHHHHHhC-------CCCceEEEEEeCC
Confidence 11 122211100 011 255579999987542 24443222221 22344555554 3
Q ss_pred chhhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHH
Q 000679 301 NRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVA 359 (1355)
Q Consensus 301 ~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 359 (1355)
...+..........++.+++++++....+.+.+...... --.+.+..+++.++|.+-.
T Consensus 148 ~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~-i~~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 148 KHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK-FEDDALHIIAQKADGALRD 205 (367)
T ss_pred cccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhCCCCHHH
Confidence 333322123334589999999999999888877332211 1135677888999986653
No 112
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.82 E-value=0.00024 Score=89.24 Aligned_cols=177 Identities=12% Similarity=0.147 Sum_probs=106.8
Q ss_pred CCccccchhHHHHHHHHHHhhcCCc-eEEEEEecCCCcHHHHHHHHHHHHhhhcCC---------------------CEE
Q 000679 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDKLF---------------------DKV 210 (1355)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---------------------~~~ 210 (1355)
.....++|.+..++.|..++..++. ..+.++|+.|+||||+|+.+++........ -.+
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv 91 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDV 91 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcE
Confidence 4455788999999999999887655 457899999999999999999887421111 011
Q ss_pred EEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHh----cCCeEEEEEeCcccc--ccccccCCCCCCccc
Q 000679 211 VFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKK 284 (1355)
Q Consensus 211 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~ 284 (1355)
++++......+++ ++.+++.+. .+++-++|||+++.. ..++.+...+..
T Consensus 92 ~eidaas~~~Vd~----------------------iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEE--- 146 (824)
T PRK07764 92 TEIDAASHGGVDD----------------------ARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEE--- 146 (824)
T ss_pred EEecccccCCHHH----------------------HHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhC---
Confidence 2222211111222 222222211 235557889999876 334444433333
Q ss_pred cCCCCCCCcEEEEEe-CchhhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHH
Q 000679 285 ERNDDRSRCTVLLTS-RNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVA 359 (1355)
Q Consensus 285 ~~~~~~~~s~ilvTt-R~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 359 (1355)
-...+.+|++| ....+..........|++..++.++..+.+.+.+......- -.+....|++.++|.+..
T Consensus 147 ----pP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i-d~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 147 ----PPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV-EPGVLPLVIRAGGGSVRD 217 (824)
T ss_pred ----CCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHH
Confidence 33455555555 44444332233457899999999999988887763322211 234467899999998843
No 113
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00036 Score=85.43 Aligned_cols=181 Identities=13% Similarity=0.179 Sum_probs=108.6
Q ss_pred CCccccchhHHHHHHHHHHhhcCCce-EEEEEecCCCcHHHHHHHHHHHHhh---------------------hcCCCEE
Q 000679 153 TAYEQFDSRMKIFQNIMEVLKDTNVG-MIGVYGVNGVGKTTLVKQIAMQVIE---------------------DKLFDKV 210 (1355)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~---------------------~~~F~~~ 210 (1355)
.....++|.+..++.+..++..+... .+.++|+.|+||||+|+.++..... ..+|+.
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~- 92 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI- 92 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-
Confidence 34456889999999999998876554 5789999999999999998887531 123432
Q ss_pred EEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCccccc--cccccCCCCCCccccCCC
Q 000679 211 VFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERND 288 (1355)
Q Consensus 211 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~ 288 (1355)
..++.+....++++.. ++.++.... ..+++=++|+|+++... .++.+...+..
T Consensus 93 ~~ld~~~~~~vd~Ir~-li~~~~~~P-----------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEe------- 147 (614)
T PRK14971 93 HELDAASNNSVDDIRN-LIEQVRIPP-----------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEE------- 147 (614)
T ss_pred EEecccccCCHHHHHH-HHHHHhhCc-----------------ccCCcEEEEEECcccCCHHHHHHHHHHHhC-------
Confidence 2233222222222221 112111100 01355588999987663 34444433332
Q ss_pred CCCCcEEEE-EeCchhhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHH
Q 000679 289 DRSRCTVLL-TSRNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAI 360 (1355)
Q Consensus 289 ~~~~s~ilv-TtR~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 360 (1355)
-...+.+|+ ||+...+.........++++.+++.++....+.+.+...... --.+.+..|++.++|-.--+
T Consensus 148 pp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~-i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 148 PPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT-AEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred CCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 234455554 445444443223445789999999999999988877432221 11345788999999977543
No 114
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=6.2e-07 Score=92.41 Aligned_cols=137 Identities=15% Similarity=0.111 Sum_probs=74.2
Q ss_pred ccccccCCCCCCccccccccccccCCccEEeeccCcCcceeccccccccccccCCCcccccccCCCCceEEEEccccchh
Q 000679 1001 LLYLRLIDLPKLMGFSIGIHSVEFPSLLELQIDDCPNMKRFISISSSQDNIHANPQPLFDEKVGTPNLMTLRVSYCHNIE 1080 (1355)
Q Consensus 1001 L~~L~l~~l~~l~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~l~~~~~~~f~~~~~l~~L~~L~l~~c~~l~ 1080 (1355)
|+.++++.|..++.........+|..|++|+++.|.-.+..... .+++.. ++|..|+|++|..--
T Consensus 236 L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv-----~V~his----------e~l~~LNlsG~rrnl 300 (419)
T KOG2120|consen 236 LVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV-----AVAHIS----------ETLTQLNLSGYRRNL 300 (419)
T ss_pred ceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhH-----HHhhhc----------hhhhhhhhhhhHhhh
Confidence 44444444444433322222224788999999999655443210 123333 789999999985321
Q ss_pred hhhccccccccccceeeccccccccccCCCcceEeeCCccccCCCccEEEEecCCCcc-ccccccccccccceeeeecc
Q 000679 1081 EIIRHVGEDVKENRITFNQLKNLELDDLPSLTSFCLGNCTLEFPSLERVFVRNCRNMK-TFSEGVVCAPKLKKVQVTKK 1158 (1355)
Q Consensus 1081 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~l~sL~~L~i~~c~~l~-~lp~~~~~~~~L~~L~l~~~ 1158 (1355)
.. .+...-...+|+|..|++.+|..|+.- .-.-...|+.|++|.++.|..+. .---.+...|+|.+|++.+|
T Consensus 301 ~~-----sh~~tL~~rcp~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 301 QK-----SHLSTLVRRCPNLVHLDLSDSVMLKND-CFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hh-----hHHHHHHHhCCceeeeccccccccCch-HHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 11 011111234556666666666555541 11112478888889888887664 11112344677777777765
No 115
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.80 E-value=0.00033 Score=85.32 Aligned_cols=183 Identities=15% Similarity=0.187 Sum_probs=107.4
Q ss_pred cCCccccchhHHHHHHHHHHhhcCCc-eEEEEEecCCCcHHHHHHHHHHHHhhhcC---CC-------------EEEEEE
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDKL---FD-------------KVVFVE 214 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F~-------------~~~wv~ 214 (1355)
|.....++|.+..++.+..++..++. ..+.++|+.|+||||+|+.++...-.... +. .++++.
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieid 93 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMD 93 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEe
Confidence 34456788999999999999886554 45679999999999999999886532110 00 011111
Q ss_pred eCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHh----cCCeEEEEEeCcccc--ccccccCCCCCCccccCCC
Q 000679 215 VTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERND 288 (1355)
Q Consensus 215 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~ 288 (1355)
..... ..+.++.+.+.+. .+++-++|+|+++.. ..++.+...+-.
T Consensus 94 aasn~----------------------~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEE------- 144 (725)
T PRK07133 94 AASNN----------------------GVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEE------- 144 (725)
T ss_pred ccccC----------------------CHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhc-------
Confidence 10001 1122333333332 136668899999765 234444333222
Q ss_pred CCCCcE-EEEEeCchhhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH-HHHHHH
Q 000679 289 DRSRCT-VLLTSRNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPV-AIKTIA 364 (1355)
Q Consensus 289 ~~~~s~-ilvTtR~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~ 364 (1355)
...... |++|++...+..........+.+.+++.++....+...+....... -.+.++.|++.++|.+- |+..+-
T Consensus 145 PP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i-d~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 145 PPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISY-EKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred CCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 223344 4555555554422233346899999999999988887663222111 13457789999999764 444443
No 116
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00037 Score=84.03 Aligned_cols=186 Identities=14% Similarity=0.184 Sum_probs=109.7
Q ss_pred cCCccccchhHHHHHHHHHHhhcCCce-EEEEEecCCCcHHHHHHHHHHHHhhhcCCC---------------------E
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLKDTNVG-MIGVYGVNGVGKTTLVKQIAMQVIEDKLFD---------------------K 209 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~---------------------~ 209 (1355)
|.....++|.+..++.|..++..+... .+.++|+.|+||||+|+.+++...-....+ .
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~d 88 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSID 88 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCce
Confidence 344567889999999999998876654 468999999999999999998753211110 1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHh----cCCeEEEEEeCcccc--ccccccCCCCCCcc
Q 000679 210 VVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVK 283 (1355)
Q Consensus 210 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~ 283 (1355)
++.++.+....+ +.++.+.+.+. .+++-++|+|++... ...+.+...+..
T Consensus 89 vieidaas~~gv----------------------d~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEE-- 144 (584)
T PRK14952 89 VVELDAASHGGV----------------------DDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEE-- 144 (584)
T ss_pred EEEeccccccCH----------------------HHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhc--
Confidence 112221111111 12222222221 135568899998765 334444333322
Q ss_pred ccCCCCCCCcEEE-EEeCchhhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh-HHHH
Q 000679 284 KERNDDRSRCTVL-LTSRNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLP-VAIK 361 (1355)
Q Consensus 284 ~~~~~~~~~s~il-vTtR~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~ 361 (1355)
-.....+| +||....+..........+.+.+++.++..+.+.+.+......- -.+....|++..+|.+ -|+.
T Consensus 145 -----pp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i-~~~al~~Ia~~s~GdlR~aln 218 (584)
T PRK14952 145 -----PPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV-DDAVYPLVIRAGGGSPRDTLS 218 (584)
T ss_pred -----CCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHH
Confidence 33345555 45444444321233357899999999999888887663322111 1345677899999977 4555
Q ss_pred HHHHHH
Q 000679 362 TIANAL 367 (1355)
Q Consensus 362 ~~~~~l 367 (1355)
.+-.++
T Consensus 219 ~Ldql~ 224 (584)
T PRK14952 219 VLDQLL 224 (584)
T ss_pred HHHHHH
Confidence 554444
No 117
>PF14516 AAA_35: AAA-like domain
Probab=97.77 E-value=0.00074 Score=76.83 Aligned_cols=211 Identities=15% Similarity=0.189 Sum_probs=122.3
Q ss_pred cCCccccchhHHHHHHHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCC-----CCHHHHHH
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQT-----PDLQTIQN 226 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-----~~~~~~~~ 226 (1355)
+.+..-++.|...-+++.+.+.+.+ ..+.|.|+-.+|||+|...+.+..+.. .+ .++++++... .+....++
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~~G-~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~f~~ 83 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQPG-SYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQFLR 83 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhcCC-CEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHHHHH
Confidence 3444557789877777888876643 689999999999999999999887643 34 3457777642 23554444
Q ss_pred HH----HHhhcccccc-------CCCHHHHHHHHHHHHh-c-CCeEEEEEeCccccccccccCCCCCCccccCCC----C
Q 000679 227 KL----SSDLELEFKQ-------NENVFQRAEKLRQRLK-N-VKRVLVILDNIWKLLNLDAVGIPFGDVKKERND----D 289 (1355)
Q Consensus 227 ~i----~~~l~~~~~~-------~~~~~~~~~~l~~~l~-~-~k~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~----~ 289 (1355)
.+ .++++....- ..........+.+.+. + +++.+|++|+|+.......+...|-.++..... .
T Consensus 84 ~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~ 163 (331)
T PF14516_consen 84 WFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNN 163 (331)
T ss_pred HHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccC
Confidence 44 4444432210 0112222233333332 1 489999999998653211110000000000000 0
Q ss_pred C-CCcEEEEEeCchh--hh----hhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 000679 290 R-SRCTVLLTSRNRD--VL----CNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKT 362 (1355)
Q Consensus 290 ~-~~s~ilvTtR~~~--v~----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 362 (1355)
. -..-.+|.....+ .. .........+.|++++.+|...|..++-.. .. ....++|...+||+|.-+..
T Consensus 164 ~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-~~----~~~~~~l~~~tgGhP~Lv~~ 238 (331)
T PF14516_consen 164 PIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-FS----QEQLEQLMDWTGGHPYLVQK 238 (331)
T ss_pred cccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-CC----HHHHHHHHHHHCCCHHHHHH
Confidence 0 1111122222111 11 111233458899999999999998876422 11 12288999999999999999
Q ss_pred HHHHHhcC
Q 000679 363 IANALKNK 370 (1355)
Q Consensus 363 ~~~~l~~~ 370 (1355)
++..+...
T Consensus 239 ~~~~l~~~ 246 (331)
T PF14516_consen 239 ACYLLVEE 246 (331)
T ss_pred HHHHHHHc
Confidence 99999664
No 118
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.76 E-value=0.00048 Score=81.63 Aligned_cols=186 Identities=10% Similarity=0.167 Sum_probs=107.8
Q ss_pred cCCccccchhHHHHHHHHHHhhcCCce-EEEEEecCCCcHHHHHHHHHHHHhhhcC------------------C-CEEE
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLKDTNVG-MIGVYGVNGVGKTTLVKQIAMQVIEDKL------------------F-DKVV 211 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------F-~~~~ 211 (1355)
|.....++|-+...+.+..++..+... ++.++|+.|+||||+|+.+++..-.... + -.++
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~ 89 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDII 89 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEE
Confidence 344556889998899999888766554 5689999999999999999887521110 1 0122
Q ss_pred EEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCccccc--cccccCCCCCCccccCCCC
Q 000679 212 FVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDD 289 (1355)
Q Consensus 212 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~ 289 (1355)
++..+....+.++...+ ..... .-..+++-++|+|+++... ..+.+...+-. .
T Consensus 90 eldaas~~gId~IReli-e~~~~-----------------~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEE-------p 144 (535)
T PRK08451 90 EMDAASNRGIDDIRELI-EQTKY-----------------KPSMARFKIFIIDEVHMLTKEAFNALLKTLEE-------P 144 (535)
T ss_pred EeccccccCHHHHHHHH-HHHhh-----------------CcccCCeEEEEEECcccCCHHHHHHHHHHHhh-------c
Confidence 22222111222222111 11100 0001356688999997652 33444333322 3
Q ss_pred CCCcEEEEEeCch-hhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 000679 290 RSRCTVLLTSRNR-DVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 363 (1355)
Q Consensus 290 ~~~s~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 363 (1355)
...+++|++|.+. .+..........+++.+++.++....+.+.+......- -.+.++.|++.++|.+--+...
T Consensus 145 p~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i-~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 145 PSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY-EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred CCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHHHH
Confidence 3456666666553 22211122346899999999999988887763322211 2456788999999988544443
No 119
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.75 E-value=0.0027 Score=71.06 Aligned_cols=205 Identities=16% Similarity=0.191 Sum_probs=125.3
Q ss_pred CccccchhHHHHHHHHHHhh----cCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHH
Q 000679 154 AYEQFDSRMKIFQNIMEVLK----DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLS 229 (1355)
Q Consensus 154 ~~~~~~gr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 229 (1355)
.....+||+.+++.+.+|+. ....+.+-|.|-+|.|||.+...++.+......=-.+++++.-.-.....++..|.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 34567899999999999886 34567889999999999999999999875321112456776665567778888888
Q ss_pred HhhccccccCCCHHHHHHHHHHHHhcCC-eEEEEEeCcccccc--ccccCCCCCCccccCCCCCCCcEEEEEeCch----
Q 000679 230 SDLELEFKQNENVFQRAEKLRQRLKNVK-RVLVILDNIWKLLN--LDAVGIPFGDVKKERNDDRSRCTVLLTSRNR---- 302 (1355)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k-~~LlvlDdv~~~~~--~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~---- 302 (1355)
..+-..........+....+.++..+.+ -+|+|+|..+.... -..+...|-+ +.-+++|+|+.---.
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFew------p~lp~sr~iLiGiANslDl 301 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEW------PKLPNSRIILIGIANSLDL 301 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhc------ccCCcceeeeeeehhhhhH
Confidence 7773222222233556667777776544 68999999876521 1111111111 133455555432111
Q ss_pred -----hhhhh-cCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHh----CCChHHHHHHH
Q 000679 303 -----DVLCN-DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRC----GGLPVAIKTIA 364 (1355)
Q Consensus 303 -----~v~~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c----~glPLai~~~~ 364 (1355)
.-... ..-....+...|-+.++-.++|..+.............++-+++++ |.+--|+.+.-
T Consensus 302 TdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 302 TDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred HHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 10010 1223567888999999999999998855444333333444444554 44444444443
No 120
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.73 E-value=0.00013 Score=76.59 Aligned_cols=183 Identities=18% Similarity=0.189 Sum_probs=113.2
Q ss_pred cCCccccchhHHHHHHHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCE-EEEEEeCCCCCHHHHHHHHHH
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDK-VVFVEVTQTPDLQTIQNKLSS 230 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~i~~ 230 (1355)
|.....++|.+..++.+.+.+.....+....+|++|.|||+-|..++...--.+.|.+ +.-.++|....+.-+-..+ +
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Ki-k 110 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKI-K 110 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhh-c
Confidence 4555678899999999988888777789999999999999999999987755556644 3344555443322111111 0
Q ss_pred hhccccccCCCHHHHHHHHHHHHh-----cCCe-EEEEEeCcccc--ccccccCCCCCCccccCCCCCCCcEEEEEeCc-
Q 000679 231 DLELEFKQNENVFQRAEKLRQRLK-----NVKR-VLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLTSRN- 301 (1355)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~l~~~l~-----~~k~-~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~- 301 (1355)
+ ...+..... .-++ -.+|||+++.. +.|.++.....+ ....++.|+.+-.
T Consensus 111 ----------~----fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~-------~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 111 ----------N----FAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMED-------FSRTTRFILICNYL 169 (346)
T ss_pred ----------C----HHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhc-------cccceEEEEEcCCh
Confidence 0 001111110 0134 47789999877 678877655444 4455554444433
Q ss_pred hhhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh
Q 000679 302 RDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLP 357 (1355)
Q Consensus 302 ~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 357 (1355)
..+.........-|+.++|.+++...-++..+..+...-+ .+..+.|++.++|--
T Consensus 170 srii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d-~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 170 SRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDID-DDALKLIAKISDGDL 224 (346)
T ss_pred hhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcH
Confidence 3322211222356889999999999988888844332222 344678889888854
No 121
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.72 E-value=0.00061 Score=80.54 Aligned_cols=186 Identities=12% Similarity=0.135 Sum_probs=105.8
Q ss_pred cCCccccchhHHHHHHHHHHhhcCCc-eEEEEEecCCCcHHHHHHHHHHHHhhhc---------------------CCCE
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDK---------------------LFDK 209 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~F~~ 209 (1355)
|.....++|.+..++.+.+++..+.. ..+.++|+.|+||||+|+.+++...... +++
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d- 91 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD- 91 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-
Confidence 34455788999999999999886654 5678999999999999999998753211 112
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCccccc--cccccCCCCCCccccCC
Q 000679 210 VVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERN 287 (1355)
Q Consensus 210 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~ 287 (1355)
.+++.-.....++++. ++.+.+. ..-..+++-++|+|+++... ..+.+...+..
T Consensus 92 ~~~i~g~~~~gid~ir-~i~~~l~-----------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEe------ 147 (451)
T PRK06305 92 VLEIDGASHRGIEDIR-QINETVL-----------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEE------ 147 (451)
T ss_pred eEEeeccccCCHHHHH-HHHHHHH-----------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhc------
Confidence 1111111111111111 1111110 00011366788999987552 23333322222
Q ss_pred CCCCCcEEEEEeCc-hhhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh-HHHHHHH
Q 000679 288 DDRSRCTVLLTSRN-RDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLP-VAIKTIA 364 (1355)
Q Consensus 288 ~~~~~s~ilvTtR~-~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~ 364 (1355)
......+|++|.. ..+..........+++.++++++....+.+.+...... --.+.+..|++.++|.+ .|+..+-
T Consensus 148 -p~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~-i~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 148 -PPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE-TSREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred -CCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2335556655533 33322112334689999999999988888776322111 12345788999999976 4444443
No 122
>CHL00181 cbbX CbbX; Provisional
Probab=97.71 E-value=0.00058 Score=75.58 Aligned_cols=132 Identities=14% Similarity=0.128 Sum_probs=71.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCC
Q 000679 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVK 257 (1355)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 257 (1355)
..+.++|++|+||||+|+.+++.......-...-|+.++ ..++..... +. ... .. .+.+....
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~----~~~l~~~~~----g~-----~~~-~~---~~~l~~a~ 122 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT----RDDLVGQYI----GH-----TAP-KT---KEVLKKAM 122 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec----HHHHHHHHh----cc-----chH-HH---HHHHHHcc
Confidence 357889999999999999999875422211112245444 222222211 11 111 11 22222123
Q ss_pred eEEEEEeCccccc------cc-----cccCCCCCCccccCCCCCCCcEEEEEeCchhhhh-------hcCCCcceEecCC
Q 000679 258 RVLVILDNIWKLL------NL-----DAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLC-------NDMNSQKFFLIEV 319 (1355)
Q Consensus 258 ~~LlvlDdv~~~~------~~-----~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~-------~~~~~~~~~~l~~ 319 (1355)
.-+|++|++.... +| +.+...+.+ ...+.+||+++....... ........+.+++
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~-------~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~ 195 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMEN-------QRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPD 195 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhc-------CCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCC
Confidence 4589999997531 11 111111222 334567777775433211 0112345899999
Q ss_pred CCHHHHHHHHHHHh
Q 000679 320 LSYEEAWCLFEKIV 333 (1355)
Q Consensus 320 L~~~~~~~lf~~~~ 333 (1355)
++.+|..+++...+
T Consensus 196 ~t~~el~~I~~~~l 209 (287)
T CHL00181 196 YTPEELLQIAKIML 209 (287)
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999988877
No 123
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.71 E-value=0.0003 Score=80.57 Aligned_cols=149 Identities=15% Similarity=0.200 Sum_probs=85.4
Q ss_pred cCCccccchhHHHHHHHHHHhhcCCc-eEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHH
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSS 230 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 230 (1355)
|.....++|.+...+.+..++..+.. .++.++|++|+||||+|+.+++... . ....++.+. .....+...+ .
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~--~---~~~~i~~~~-~~~~~i~~~l-~ 89 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVG--A---EVLFVNGSD-CRIDFVRNRL-T 89 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC--c---cceEeccCc-ccHHHHHHHH-H
Confidence 44556788999999999999876554 5667799999999999999988752 1 123444443 2222111111 1
Q ss_pred hhccccccCCCHHHHHHHHHHHHh-cCCeEEEEEeCccccc--cc-cccCCCCCCccccCCCCCCCcEEEEEeCchhhh-
Q 000679 231 DLELEFKQNENVFQRAEKLRQRLK-NVKRVLVILDNIWKLL--NL-DAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVL- 305 (1355)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~l~~~l~-~~k~~LlvlDdv~~~~--~~-~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~- 305 (1355)
.+ ..... .+.+-++|+||++... .. +.+...+.. ...++++|+||......
T Consensus 90 ~~-----------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~-------~~~~~~~Ilt~n~~~~l~ 145 (316)
T PHA02544 90 RF-----------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEA-------YSKNCSFIITANNKNGII 145 (316)
T ss_pred HH-----------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHh-------cCCCceEEEEcCChhhch
Confidence 11 11110 1245678899997551 11 122211211 34567888888654311
Q ss_pred hhcCCCcceEecCCCCHHHHHHHHHH
Q 000679 306 CNDMNSQKFFLIEVLSYEEAWCLFEK 331 (1355)
Q Consensus 306 ~~~~~~~~~~~l~~L~~~~~~~lf~~ 331 (1355)
.........+.++..+.++..+++..
T Consensus 146 ~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 146 EPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred HHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 11112234677777888877766543
No 124
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00068 Score=83.44 Aligned_cols=197 Identities=13% Similarity=0.135 Sum_probs=110.6
Q ss_pred cCCccccchhHHHHHHHHHHhhcCCc-eEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHH
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSS 230 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 230 (1355)
|.....++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+++.......+. -..........+.|..
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~ 85 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAE 85 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhc
Confidence 34445788999999999888876554 4568999999999999999998763211100 0011112223333332
Q ss_pred hhcccc---cc-CCCHHHHHHHHHHHHh----cCCeEEEEEeCcccc--ccccccCCCCCCccccCCCCCCCcEEEEEeC
Q 000679 231 DLELEF---KQ-NENVFQRAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLTSR 300 (1355)
Q Consensus 231 ~l~~~~---~~-~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR 300 (1355)
....+. +. .....+.+..+.+.+. .+++-++|+|+++.. ...+.+...+.. ....+.+|++|.
T Consensus 86 ~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEe-------pp~~tv~Il~t~ 158 (585)
T PRK14950 86 GSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEE-------PPPHAIFILATT 158 (585)
T ss_pred CCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhc-------CCCCeEEEEEeC
Confidence 221110 00 0011122223333322 136678999999755 234444333222 234556665554
Q ss_pred c-hhhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 000679 301 N-RDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKT 362 (1355)
Q Consensus 301 ~-~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 362 (1355)
+ ..+..........+.++.++.++....+.+.+...... --.+.+..|++.++|.+..+.-
T Consensus 159 ~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~-i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 159 EVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN-LEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred ChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 3 33322122334678899999999998888877432211 1135678899999998865443
No 125
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.70 E-value=0.00018 Score=82.08 Aligned_cols=109 Identities=18% Similarity=0.253 Sum_probs=72.7
Q ss_pred cccchhHHHHHHHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccc
Q 000679 156 EQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELE 235 (1355)
Q Consensus 156 ~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 235 (1355)
.+.++.+..++.+...|... +.|.++|++|+|||++|+.+++.......|+.+.||++++.++..++...+.-. +..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~vg 251 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GVG 251 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CCC
Confidence 34667888899999888753 577889999999999999999987655678899999999998877766433110 000
Q ss_pred cccCCCHHHHHHHHHHHHhc-CCeEEEEEeCcccc
Q 000679 236 FKQNENVFQRAEKLRQRLKN-VKRVLVILDNIWKL 269 (1355)
Q Consensus 236 ~~~~~~~~~~~~~l~~~l~~-~k~~LlvlDdv~~~ 269 (1355)
....... ..+.+.+.-.+ ++++.+|+|++...
T Consensus 252 y~~~~G~--f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 252 FRRKDGI--FYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred eEecCch--HHHHHHHHHhcccCCcEEEEehhhcc
Confidence 0000010 11111222121 37899999998655
No 126
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.69 E-value=1.3e-06 Score=100.54 Aligned_cols=126 Identities=25% Similarity=0.307 Sum_probs=81.6
Q ss_pred cceEEEecCCCccccCcccccccCCcEEEecCCCCCCccccccccccceeecccCCCCccchh-hhccccCcEEeccCcc
Q 000679 561 ELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGDVAIVGQLKKLEILSFRNSDIQQLPRE-IGQLVQLRLLDLRNCR 639 (1355)
Q Consensus 561 ~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~p~~i~~L~~L~~L~L~~~~l~~lP~~-i~~L~~L~~L~l~~~~ 639 (1355)
.|.+-+.++|.+..+-.++.-+++|+.|+|++|++.....+..|.+|++|||++|.+..+|.- ...+ +|+.|++++ +
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrn-N 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRN-N 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecc-c
Confidence 455666667766666667777777777777777777766777777777777777777777641 2223 377777777 4
Q ss_pred hhhccchhHHhhhccccccccCCCccccccccCCCccchhhhcCCCCCCeEEEEeccc
Q 000679 640 RLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTLEIHIRDA 697 (1355)
Q Consensus 640 ~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~ 697 (1355)
.++.+-. |.+|++|+.|+++.|.+. +...+.-|..|..|+.|.+.+|..
T Consensus 243 ~l~tL~g--ie~LksL~~LDlsyNll~-------~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 243 ALTTLRG--IENLKSLYGLDLSYNLLS-------EHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred HHHhhhh--HHhhhhhhccchhHhhhh-------cchhhhHHHHHHHHHHHhhcCCcc
Confidence 4665533 777777777777776553 233344455556666677666543
No 127
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.69 E-value=4.9e-05 Score=56.48 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=19.9
Q ss_pred cceEEEecCCCccccCcccccccCCcEEEecCCCCCC
Q 000679 561 ELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGD 597 (1355)
Q Consensus 561 ~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~ 597 (1355)
+|++|++++|.|.++|..+++|++|++|++++|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 4555666666655555555555555555555555443
No 128
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.68 E-value=0.001 Score=79.23 Aligned_cols=181 Identities=14% Similarity=0.151 Sum_probs=104.4
Q ss_pred CCccccchhHHHHHHHHHHhhcCCc-eEEEEEecCCCcHHHHHHHHHHHHhhh-------------------cCCCEEEE
Q 000679 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIED-------------------KLFDKVVF 212 (1355)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~w 212 (1355)
.....++|.+..+..+..++..+.. ..+.++|+.|+||||+|+.++...... ..|...++
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~e 92 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIE 92 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEE
Confidence 4445678999999999999876554 456789999999999999998865310 00111222
Q ss_pred EEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHh----cCCeEEEEEeCccccc--cccccCCCCCCccccC
Q 000679 213 VEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKER 286 (1355)
Q Consensus 213 v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~ 286 (1355)
+..+....+. .++.+.+... .+++-++|+|+++... ..+.+...+..
T Consensus 93 idaas~~gvd----------------------~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEe----- 145 (486)
T PRK14953 93 IDAASNRGID----------------------DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEE----- 145 (486)
T ss_pred EeCccCCCHH----------------------HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhc-----
Confidence 2221111111 1222222222 1366799999987552 33444333322
Q ss_pred CCCCCCcEEEE-EeCchhhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 000679 287 NDDRSRCTVLL-TSRNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 363 (1355)
Q Consensus 287 ~~~~~~s~ilv-TtR~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 363 (1355)
......+|+ ||+...+..........+.+.+++.++....+.+.+...... --.+.+..|++.++|.+-.+...
T Consensus 146 --pp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~-id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 146 --PPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE-YEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred --CCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 233444444 444433332112334578999999999988888876322211 12345677888999976544333
No 129
>PRK05642 DNA replication initiation factor; Validated
Probab=97.65 E-value=0.00048 Score=74.13 Aligned_cols=152 Identities=16% Similarity=0.205 Sum_probs=91.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCC
Q 000679 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVK 257 (1355)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 257 (1355)
..+.|+|..|+|||.||+.+++....+ -..++|++..+ +... ...+.+.+.+ -
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~------------------~~~~~~~~~~-~ 98 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR------------------GPELLDNLEQ-Y 98 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh------------------hHHHHHhhhh-C
Confidence 578999999999999999999876432 24567776432 2111 0123344442 2
Q ss_pred eEEEEEeCcccc---ccccc-cCCCCCCccccCCCCCCCcEEEEEeCchhhhh--------hcCCCcceEecCCCCHHHH
Q 000679 258 RVLVILDNIWKL---LNLDA-VGIPFGDVKKERNDDRSRCTVLLTSRNRDVLC--------NDMNSQKFFLIEVLSYEEA 325 (1355)
Q Consensus 258 ~~LlvlDdv~~~---~~~~~-~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~--------~~~~~~~~~~l~~L~~~~~ 325 (1355)
=+||+||+... ..|+. +...+.. + ...|.+||+|++...-.. .......++++++++.++-
T Consensus 99 -d~LiiDDi~~~~~~~~~~~~Lf~l~n~----~--~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~ 171 (234)
T PRK05642 99 -ELVCLDDLDVIAGKADWEEALFHLFNR----L--RDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDK 171 (234)
T ss_pred -CEEEEechhhhcCChHHHHHHHHHHHH----H--HhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHH
Confidence 26789999743 34433 2111111 0 234667888887643221 0122246789999999999
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHH
Q 000679 326 WCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIA 364 (1355)
Q Consensus 326 ~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 364 (1355)
.+.+++++.... -.--+++..-|++++.|-.-++..+-
T Consensus 172 ~~il~~ka~~~~-~~l~~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 172 LRALQLRASRRG-LHLTDEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 999996663221 11114677888888888765554443
No 130
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.65 E-value=0.00078 Score=74.70 Aligned_cols=132 Identities=16% Similarity=0.144 Sum_probs=71.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCCe
Q 000679 179 MIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKR 258 (1355)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~ 258 (1355)
-+.++|++|+|||++|+.++............-|+.++. .++. ..+.+. .. . .+.+.+.+...
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l~----~~~~g~-----~~-~---~~~~~~~~a~~ 122 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDLV----GQYIGH-----TA-P---KTKEILKRAMG 122 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHHh----Hhhccc-----ch-H---HHHHHHHHccC
Confidence 588999999999999998888764322222222444442 2222 222111 11 1 12222222244
Q ss_pred EEEEEeCcccc------ccc-----cccCCCCCCccccCCCCCCCcEEEEEeCchhhhhh-------cCCCcceEecCCC
Q 000679 259 VLVILDNIWKL------LNL-----DAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCN-------DMNSQKFFLIEVL 320 (1355)
Q Consensus 259 ~LlvlDdv~~~------~~~-----~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~-------~~~~~~~~~l~~L 320 (1355)
-+|++|++... ..| +.+...+.. ...+.+||+++........ .......++++++
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~-------~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l 195 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMEN-------QRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDY 195 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhc-------CCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCc
Confidence 68899999632 011 222222222 3455677777654322110 0111357899999
Q ss_pred CHHHHHHHHHHHhC
Q 000679 321 SYEEAWCLFEKIVG 334 (1355)
Q Consensus 321 ~~~~~~~lf~~~~~ 334 (1355)
+.+|-.+++...+.
T Consensus 196 ~~edl~~I~~~~l~ 209 (284)
T TIGR02880 196 SEAELLVIAGLMLK 209 (284)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988773
No 131
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.65 E-value=0.00044 Score=76.19 Aligned_cols=154 Identities=17% Similarity=0.184 Sum_probs=78.8
Q ss_pred ccchhHHHHHHHHH---Hhh------------cCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCH
Q 000679 157 QFDSRMKIFQNIME---VLK------------DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDL 221 (1355)
Q Consensus 157 ~~~gr~~~~~~l~~---~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 221 (1355)
.++|.+..+++|.+ +.. .+....+.++|++|+||||+|+.+++.......-....++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 46777766655543 332 12345678999999999999999998753211111112333322
Q ss_pred HHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCccccc----------cccccCCCCCCccccCCCCCC
Q 000679 222 QTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL----------NLDAVGIPFGDVKKERNDDRS 291 (1355)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~----------~~~~~~~~~~~~~~~~~~~~~ 291 (1355)
.++..... + .. . ..+.+.+......+|++|+++... ..+.+...+.+ ...
T Consensus 83 ~~l~~~~~---g------~~-~---~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~-------~~~ 142 (261)
T TIGR02881 83 ADLVGEYI---G------HT-A---QKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMED-------NRN 142 (261)
T ss_pred HHhhhhhc---c------ch-H---HHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhc-------cCC
Confidence 11111100 0 01 1 112222222233588999997532 11222111111 223
Q ss_pred CcEEEEEeCchhhh-------hhcCCCcceEecCCCCHHHHHHHHHHHhC
Q 000679 292 RCTVLLTSRNRDVL-------CNDMNSQKFFLIEVLSYEEAWCLFEKIVG 334 (1355)
Q Consensus 292 ~s~ilvTtR~~~v~-------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 334 (1355)
...+|+++...+.. .........+++++++.+|-.+++++.+.
T Consensus 143 ~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 143 EFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 33555555443221 00111235688999999999999988774
No 132
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.62 E-value=0.00051 Score=87.16 Aligned_cols=159 Identities=13% Similarity=0.210 Sum_probs=92.1
Q ss_pred CccccchhHHHHHHHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHHhhhc---CC-CEEEEEEeCCCCCHHHHHHHHH
Q 000679 154 AYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDK---LF-DKVVFVEVTQTPDLQTIQNKLS 229 (1355)
Q Consensus 154 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F-~~~~wv~~s~~~~~~~~~~~i~ 229 (1355)
....++||+++++++++.|......-+.++|++|+|||++|+.+++...... .+ +..+|. + +...+ .
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l----~ 250 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSL----L 250 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHH----h
Confidence 3346889999999999998866566678999999999999999999864321 11 334442 1 11111 1
Q ss_pred HhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCcccccc--------c--cccCCCCCCccccCCCCCCCcEEEEEe
Q 000679 230 SDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLN--------L--DAVGIPFGDVKKERNDDRSRCTVLLTS 299 (1355)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~--------~--~~~~~~~~~~~~~~~~~~~~s~ilvTt 299 (1355)
.... . . ....+.+..+.+.+...++.+|++|+++.... . ..+..+ .+..+ .-++|-+|
T Consensus 251 a~~~--~-~-g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~-------~l~~g-~i~~IgaT 318 (731)
T TIGR02639 251 AGTK--Y-R-GDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKP-------ALSSG-KLRCIGST 318 (731)
T ss_pred hhcc--c-c-chHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHH-------HHhCC-CeEEEEec
Confidence 1000 0 0 12334455555555544688999999974421 0 111111 11122 23444444
Q ss_pred Cchhh------hhhcCCCcceEecCCCCHHHHHHHHHHHh
Q 000679 300 RNRDV------LCNDMNSQKFFLIEVLSYEEAWCLFEKIV 333 (1355)
Q Consensus 300 R~~~v------~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 333 (1355)
...+. ..........+.++.++.++..++++...
T Consensus 319 t~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 319 TYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred CHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 43211 11012234578999999999999998655
No 133
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.60 E-value=0.00044 Score=80.58 Aligned_cols=180 Identities=16% Similarity=0.198 Sum_probs=99.0
Q ss_pred ccccchhHHHHHHHHHHhhc-------------CCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCH
Q 000679 155 YEQFDSRMKIFQNIMEVLKD-------------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDL 221 (1355)
Q Consensus 155 ~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 221 (1355)
+..+.|+++.++++.+.+.. ...+-|.++|++|+|||++|+++++.... . |+.++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~--~-----~i~v~~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA--T-----FIRVVG---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC--C-----EEEeeh----
Confidence 34678999999998887631 23567899999999999999999987632 2 233321
Q ss_pred HHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCccccccc--------c-ccCCCCCCccccCC--CCC
Q 000679 222 QTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNL--------D-AVGIPFGDVKKERN--DDR 290 (1355)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~--------~-~~~~~~~~~~~~~~--~~~ 290 (1355)
.++. ....+ .....+..+.+......+.+|++||++....- + .+...+..++.... ...
T Consensus 199 ~~l~----~~~~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 199 SELV----QKFIG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred HHHh----Hhhcc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 1111 11110 11222333444433346789999999764100 0 00000000110000 022
Q ss_pred CCcEEEEEeCchhhh-hhcC---CCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh
Q 000679 291 SRCTVLLTSRNRDVL-CNDM---NSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLP 357 (1355)
Q Consensus 291 ~~s~ilvTtR~~~v~-~~~~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 357 (1355)
.+..||.||...... .... .....+.+...+.++-.++|+.+........+. ....+++.+.|.-
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~--~~~~la~~t~g~s 337 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDV--DLEELAELTEGAS 337 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcC--CHHHHHHHcCCCC
Confidence 356777777654322 1111 124579999999999999999887443222211 1345666666644
No 134
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.59 E-value=0.0013 Score=80.70 Aligned_cols=197 Identities=12% Similarity=0.118 Sum_probs=109.0
Q ss_pred CCccccchhHHHHHHHHHHhhcCCc-eEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHh
Q 000679 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSD 231 (1355)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 231 (1355)
.....++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+++..-....... . ......-+..+.+...
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-~----~~~Cg~C~~C~~i~~g 87 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-T----PEPCGKCELCRAIAAG 87 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-C----CCCCcccHHHHHHhcC
Confidence 4445678999999999888886543 57789999999999999999998642211100 0 0111122233333222
Q ss_pred hcccc---cc-CCCHHHHHHHHHHHHh----cCCeEEEEEeCcccc--ccccccCCCCCCccccCCCCCCCcEEEEEe-C
Q 000679 232 LELEF---KQ-NENVFQRAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLTS-R 300 (1355)
Q Consensus 232 l~~~~---~~-~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~s~ilvTt-R 300 (1355)
...+. .. .....+.++.+.+... .+++-++|+|+++.. ..++.+...+.. -.....+|++| .
T Consensus 88 ~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEe-------Pp~~tvfIL~t~~ 160 (620)
T PRK14948 88 NALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEE-------PPPRVVFVLATTD 160 (620)
T ss_pred CCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhc-------CCcCeEEEEEeCC
Confidence 21110 00 0111222233333222 135568899999865 334444333322 23344444444 3
Q ss_pred chhhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 000679 301 NRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKT 362 (1355)
Q Consensus 301 ~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 362 (1355)
...+..........+.+..++.++....+.+.+......- -.+.+..|++.++|.+..+..
T Consensus 161 ~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i-s~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 161 PQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI-EPEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred hhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCCHHHHHH
Confidence 3333321223346788889999998888877664322111 124577899999998854443
No 135
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.58 E-value=6.2e-06 Score=101.53 Aligned_cols=67 Identities=22% Similarity=0.327 Sum_probs=36.6
Q ss_pred cccccccccCCCCCCccccccccccccCCccEEeeccCcCcceeccccccccccccCCCcccccccCCCCceEEEEcccc
Q 000679 998 FPKLLYLRLIDLPKLMGFSIGIHSVEFPSLLELQIDDCPNMKRFISISSSQDNIHANPQPLFDEKVGTPNLMTLRVSYCH 1077 (1355)
Q Consensus 998 l~~L~~L~l~~l~~l~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~l~~~~~~~f~~~~~l~~L~~L~l~~c~ 1077 (1355)
+++|+.+++..+..+++.........++.|+.|.+.+|..+++.. +.... ...++|++|+++.|.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~g--------l~~i~-------~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEG--------LVSIA-------ERCPSLRELDLSGCH 306 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhH--------HHHHH-------HhcCcccEEeeecCc
Confidence 455555555555544433332222237788888877787644321 11110 223778888888887
Q ss_pred ch
Q 000679 1078 NI 1079 (1355)
Q Consensus 1078 ~l 1079 (1355)
.+
T Consensus 307 ~~ 308 (482)
T KOG1947|consen 307 GL 308 (482)
T ss_pred cc
Confidence 65
No 136
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.58 E-value=0.00037 Score=75.27 Aligned_cols=166 Identities=10% Similarity=0.104 Sum_probs=93.6
Q ss_pred HHHHHHHHHhh-cCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCC
Q 000679 163 KIFQNIMEVLK-DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNEN 241 (1355)
Q Consensus 163 ~~~~~l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~ 241 (1355)
..+..+.++.. ....+.+.|+|..|+|||+||+.+++....+ .. .+.+++..+.. ..+
T Consensus 27 ~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~-~~-~~~~i~~~~~~------~~~------------- 85 (227)
T PRK08903 27 ELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG-GR-NARYLDAASPL------LAF------------- 85 (227)
T ss_pred HHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-CC-cEEEEehHHhH------HHH-------------
Confidence 34444445444 2345688999999999999999999976422 22 34455433211 000
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEeCcccccccc--ccCCCCCCccccCCCCCCCc-EEEEEeCchhhhhh-------cCCC
Q 000679 242 VFQRAEKLRQRLKNVKRVLVILDNIWKLLNLD--AVGIPFGDVKKERNDDRSRC-TVLLTSRNRDVLCN-------DMNS 311 (1355)
Q Consensus 242 ~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~--~~~~~~~~~~~~~~~~~~~s-~ilvTtR~~~v~~~-------~~~~ 311 (1355)
.... +.-+||+||++....+. .+...+.. . ...+. .||+|++....... ....
T Consensus 86 ---------~~~~--~~~~liiDdi~~l~~~~~~~L~~~~~~----~--~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~ 148 (227)
T PRK08903 86 ---------DFDP--EAELYAVDDVERLDDAQQIALFNLFNR----V--RAHGQGALLVAGPAAPLALPLREDLRTRLGW 148 (227)
T ss_pred ---------hhcc--cCCEEEEeChhhcCchHHHHHHHHHHH----H--HHcCCcEEEEeCCCCHHhCCCCHHHHHHHhc
Confidence 0111 33478899997653222 12111111 0 12333 46677665432210 1222
Q ss_pred cceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHH
Q 000679 312 QKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANAL 367 (1355)
Q Consensus 312 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 367 (1355)
...+++.++++++-..++.+.+..... .--++..+.+++...|.+..+..+-..+
T Consensus 149 ~~~i~l~pl~~~~~~~~l~~~~~~~~v-~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 149 GLVYELKPLSDADKIAALKAAAAERGL-QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CeEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 468899999998877777765522111 1124567788888999998877665544
No 137
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.57 E-value=0.00069 Score=73.57 Aligned_cols=168 Identities=16% Similarity=0.199 Sum_probs=105.2
Q ss_pred ccchhHHHHHHHHHHhhcCC---ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhc
Q 000679 157 QFDSRMKIFQNIMEVLKDTN---VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLE 233 (1355)
Q Consensus 157 ~~~gr~~~~~~l~~~L~~~~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (1355)
.|.+|+.++..+...+.+.. +..|-|+|-+|.|||.+.+++.+... -..+|+++-+.++...+...|+.+.+
T Consensus 7 ~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~IL~~~~ 81 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKILNKSQ 81 (438)
T ss_pred CccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHHHHHhc
Confidence 56799999999999887443 24457899999999999999998873 23589999999999999999999985
Q ss_pred -cccccCC--CHHHHHHHHHHHHhc-------CCeEEEEEeCccccccccccCCCCCCccccCCC-CCCCcEEEEEeCch
Q 000679 234 -LEFKQNE--NVFQRAEKLRQRLKN-------VKRVLVILDNIWKLLNLDAVGIPFGDVKKERND-DRSRCTVLLTSRNR 302 (1355)
Q Consensus 234 -~~~~~~~--~~~~~~~~l~~~l~~-------~k~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~-~~~~s~ilvTtR~~ 302 (1355)
.+.+... ...+........+.+ ++.++||||+++...+.+++..+ .+++..-. ..+. -+|+++-..
T Consensus 82 ~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~--~l~~L~el~~~~~-i~iils~~~ 158 (438)
T KOG2543|consen 82 LADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQ--CLFRLYELLNEPT-IVIILSAPS 158 (438)
T ss_pred cCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHH--HHHHHHHHhCCCc-eEEEEeccc
Confidence 2222211 111222222222221 36899999999888766654221 11111000 2233 344444333
Q ss_pred hhh--hhcCCCc--ceEecCCCCHHHHHHHHHHH
Q 000679 303 DVL--CNDMNSQ--KFFLIEVLSYEEAWCLFEKI 332 (1355)
Q Consensus 303 ~v~--~~~~~~~--~~~~l~~L~~~~~~~lf~~~ 332 (1355)
... ...+++. .++....-+.+|..+++.+-
T Consensus 159 ~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 159 CEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 222 1123443 35667788888888888653
No 138
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.57 E-value=0.0007 Score=86.41 Aligned_cols=183 Identities=11% Similarity=0.109 Sum_probs=101.7
Q ss_pred CCccccchhHHHHHHHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHHhhhcC----CCEEEE-EEeCCCCCHHHHHHH
Q 000679 153 TAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKL----FDKVVF-VEVTQTPDLQTIQNK 227 (1355)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~w-v~~s~~~~~~~~~~~ 227 (1355)
.....++||+.++.++++.|......-+.++|++|+||||+|+.++++...... .+..+| +.++.-.
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~-------- 255 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQ-------- 255 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhh--------
Confidence 334568999999999999988666667789999999999999999998642211 123333 3322100
Q ss_pred HHHhhccccccCCCHHHHHHHHHHHHh-cCCeEEEEEeCcccccc-------cc--ccCCCCCCccccCCCCCCCcEEEE
Q 000679 228 LSSDLELEFKQNENVFQRAEKLRQRLK-NVKRVLVILDNIWKLLN-------LD--AVGIPFGDVKKERNDDRSRCTVLL 297 (1355)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~k~~LlvlDdv~~~~~-------~~--~~~~~~~~~~~~~~~~~~~s~ilv 297 (1355)
+ +... . ......+..+.+.+. .+++.+|++|++..... -+ .+..|. + ....-++|-
T Consensus 256 -a---g~~~-~-ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~-------l-~~G~l~~Ig 321 (852)
T TIGR03345 256 -A---GASV-K-GEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPA-------L-ARGELRTIA 321 (852)
T ss_pred -c---cccc-c-hHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHH-------h-hCCCeEEEE
Confidence 0 0000 0 011223333333333 24789999999876521 11 111111 1 222345566
Q ss_pred EeCchhhh------hhcCCCcceEecCCCCHHHHHHHHHHHhCC---CCCCcchHHHHHHHHHHhCCCh
Q 000679 298 TSRNRDVL------CNDMNSQKFFLIEVLSYEEAWCLFEKIVGD---SAKASDFRVIADEIVRRCGGLP 357 (1355)
Q Consensus 298 TtR~~~v~------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~---~~~~~~~~~~~~~i~~~c~glP 357 (1355)
||...+.. .........+.+++++.++..++++..... ...-.-..+....+++.+.+..
T Consensus 322 aTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 322 ATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred ecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 65543221 101223468999999999999997654421 1111112344556666665433
No 139
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.56 E-value=8.6e-05 Score=55.18 Aligned_cols=37 Identities=30% Similarity=0.455 Sum_probs=16.8
Q ss_pred CCcEEEecCCCCCC-ccccccccccceeecccCCCCcc
Q 000679 584 SLRTLSLEGCQVGD-VAIVGQLKKLEILSFRNSDIQQL 620 (1355)
Q Consensus 584 ~Lr~L~L~~~~i~~-p~~i~~L~~L~~L~L~~~~l~~l 620 (1355)
+|++|++++|.+++ |..+++|++|++|++++|.++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 44555555555444 33344555555555555444443
No 140
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.56 E-value=0.0014 Score=79.23 Aligned_cols=194 Identities=11% Similarity=0.148 Sum_probs=106.5
Q ss_pred cCCccccchhHHHHHHHHHHhhcCCc-eEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHH
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSS 230 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 230 (1355)
|....+++|-+..++.+..++..+.. ..+.++|+.|+||||+|+.+++..-.....+. ..+.. -...+.|..
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~----C~~C~~i~~ 84 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGE----CSSCKSIDN 84 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCcc----chHHHHHHc
Confidence 44556788999999999999886554 45789999999999999999987632111000 00000 000011111
Q ss_pred hhccc---cccC-CCHHHHHHHHHHHHh----cCCeEEEEEeCccccc--cccccCCCCCCccccCCCCCCCcEEEEEeC
Q 000679 231 DLELE---FKQN-ENVFQRAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSR 300 (1355)
Q Consensus 231 ~l~~~---~~~~-~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR 300 (1355)
.-..+ .+.. ....+.+..+.+.+. .+++-++|+|++.... .++.+...+.. ......+|++|.
T Consensus 85 ~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEe-------pp~~~vfI~~tt 157 (563)
T PRK06647 85 DNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEE-------PPPYIVFIFATT 157 (563)
T ss_pred CCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhcc-------CCCCEEEEEecC
Confidence 00000 0000 011111222222111 1356689999987653 34555444333 334555655554
Q ss_pred c-hhhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHH
Q 000679 301 N-RDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAI 360 (1355)
Q Consensus 301 ~-~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 360 (1355)
. ..+..........++..+++.++..+.+.+.+...... --.+.+..|++.++|.+-.+
T Consensus 158 e~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~-id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 158 EVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK-YEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred ChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 3 33332122334578999999999988888776322211 12455778999999987543
No 141
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.54 E-value=0.0013 Score=77.52 Aligned_cols=158 Identities=14% Similarity=0.127 Sum_probs=90.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCC
Q 000679 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVK 257 (1355)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 257 (1355)
..+.|+|+.|+|||+||+.+++..... -..+++++ ..++...+...+... ....+++.+. +
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~------~~~f~~~~~~~l~~~---------~~~~f~~~~~--~ 202 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVR------SELFTEHLVSAIRSG---------EMQRFRQFYR--N 202 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEee------HHHHHHHHHHHHhcc---------hHHHHHHHcc--c
Confidence 568899999999999999999987532 23355654 334444444444311 1123344333 4
Q ss_pred eEEEEEeCccccccccccCCCCCCccccCCCCCCCcEEEEEeCchh-----hh---hhcCCCcceEecCCCCHHHHHHHH
Q 000679 258 RVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRD-----VL---CNDMNSQKFFLIEVLSYEEAWCLF 329 (1355)
Q Consensus 258 ~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~-----v~---~~~~~~~~~~~l~~L~~~~~~~lf 329 (1355)
.-+|++||+......+.....+-.+++.+ ...|..||+||.... +. .........+.+++++.++-..++
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l--~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSL--HTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHH--HHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 45888999876532211000010111111 123456888875431 11 112334568999999999999999
Q ss_pred HHHhCCCCCCcchHHHHHHHHHHhCCCh
Q 000679 330 EKIVGDSAKASDFRVIADEIVRRCGGLP 357 (1355)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~i~~~c~glP 357 (1355)
++++..... .--+++..-|++.+.|.-
T Consensus 281 ~~k~~~~~~-~l~~evl~~la~~~~~di 307 (445)
T PRK12422 281 ERKAEALSI-RIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHcCC-CCCHHHHHHHHHhcCCCH
Confidence 988843211 112456666777776543
No 142
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.54 E-value=3.1e-05 Score=91.93 Aligned_cols=106 Identities=24% Similarity=0.331 Sum_probs=81.6
Q ss_pred cCCCcceEEEecCCCccccCcccccccCCcEEEecCCCCCCccccccccccceeecccCCCCccchhhhccccCcEEecc
Q 000679 557 EGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGDVAIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLR 636 (1355)
Q Consensus 557 ~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~p~~i~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~ 636 (1355)
..++.|..|++.+|.|..+...+..+.+|++|++++|.|+....+..+..|+.|++++|.+..++. +..+++|+.++++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG-LESLKSLKLLDLS 170 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccC-CccchhhhcccCC
Confidence 667888888888888887776677888888888888888887778888888888888888777663 5558888888888
Q ss_pred Ccchhhccch-hHHhhhccccccccCCCcc
Q 000679 637 NCRRLQAIAP-NVISKLSRLEELYMGDSFS 665 (1355)
Q Consensus 637 ~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~ 665 (1355)
++ .+..+.. . +..+.+|+.+.+++|.+
T Consensus 171 ~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 171 YN-RIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred cc-hhhhhhhhh-hhhccchHHHhccCCch
Confidence 84 4555544 2 36788888888877755
No 143
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.53 E-value=0.0014 Score=80.14 Aligned_cols=199 Identities=11% Similarity=0.163 Sum_probs=107.1
Q ss_pred cCCccccchhHHHHHHHHHHhhcCCc-eEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHH
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSS 230 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 230 (1355)
|.....++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+++..-.....+. ...........|..
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~~ 84 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEITE 84 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHhc
Confidence 34556788999999999999886655 45689999999999999999887532111000 00000011111110
Q ss_pred hhccc---ccc-CCCHHHHHHHHHHHHh----cCCeEEEEEeCccccc--cccccCCCCCCccccCCCCCCCcEEE-EEe
Q 000679 231 DLELE---FKQ-NENVFQRAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVL-LTS 299 (1355)
Q Consensus 231 ~l~~~---~~~-~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~il-vTt 299 (1355)
.-..+ .+. .....+.++.+.+.+. .+++-++|+|+++... ..+.+...+-. -...+.+| +||
T Consensus 85 g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEe-------pp~~~~fIl~t~ 157 (576)
T PRK14965 85 GRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEE-------PPPHVKFIFATT 157 (576)
T ss_pred CCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHc-------CCCCeEEEEEeC
Confidence 00000 000 0001112222333222 1355578999997653 33444332222 23345555 455
Q ss_pred CchhhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh-HHHHHHHH
Q 000679 300 RNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLP-VAIKTIAN 365 (1355)
Q Consensus 300 R~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~ 365 (1355)
....+..........+.+.+++.++....+...+......- -.+.+..|++.++|.. .|+..+-.
T Consensus 158 ~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i-~~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 158 EPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI-SDAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred ChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 54544432233356788999999998888877663322111 1345678899999866 55555433
No 144
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.53 E-value=0.0006 Score=80.62 Aligned_cols=159 Identities=18% Similarity=0.222 Sum_probs=94.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCC
Q 000679 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVK 257 (1355)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 257 (1355)
..+.|+|+.|+|||.||+++++....+..=..++|++. .++...+...+... . ...+.+.+. +
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~----~~~~~~~~~--~ 199 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN-----K----MEEFKEKYR--S 199 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----C----HHHHHHHHH--h
Confidence 56899999999999999999998764321134566643 34444454444321 1 223444444 2
Q ss_pred eEEEEEeCccccccc---c-ccCCCCCCccccCCCCCCCcEEEEEeCchhhh--------hhcCCCcceEecCCCCHHHH
Q 000679 258 RVLVILDNIWKLLNL---D-AVGIPFGDVKKERNDDRSRCTVLLTSRNRDVL--------CNDMNSQKFFLIEVLSYEEA 325 (1355)
Q Consensus 258 ~~LlvlDdv~~~~~~---~-~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~--------~~~~~~~~~~~l~~L~~~~~ 325 (1355)
.-+||+||++..... . .+...+.. + ...+..+|+||....-. ...+.....+.+++.+.++-
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~----~--~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r 273 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNA----L--HENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETR 273 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHH----H--HHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHH
Confidence 348899999754221 1 11111111 1 12345678877643211 11233345789999999999
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHH
Q 000679 326 WCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAI 360 (1355)
Q Consensus 326 ~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 360 (1355)
..++++.+..... .--+++...|++.+.|..-.+
T Consensus 274 ~~il~~~~~~~~~-~l~~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 274 LAILQKKAEEEGL-ELPDEVLEFIAKNIRSNVREL 307 (405)
T ss_pred HHHHHHHHHHcCC-CCCHHHHHHHHHhcCCCHHHH
Confidence 9999998844221 112567788888888876543
No 145
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.53 E-value=0.00059 Score=81.39 Aligned_cols=160 Identities=15% Similarity=0.170 Sum_probs=95.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCC
Q 000679 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVK 257 (1355)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 257 (1355)
..+.|+|..|+|||.|++.+++.......--.++|++. .++...+...+... ....+.+++. +
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~~---------~~~~f~~~y~--~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRDG---------KGDSFRRRYR--E 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc---------cHHHHHHHhh--c
Confidence 45899999999999999999998753211234566643 44444444433211 1223444444 3
Q ss_pred eEEEEEeCccccc---cccccCCCCCCccccCCCCCCCcEEEEEeCchh--hh------hhcCCCcceEecCCCCHHHHH
Q 000679 258 RVLVILDNIWKLL---NLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRD--VL------CNDMNSQKFFLIEVLSYEEAW 326 (1355)
Q Consensus 258 ~~LlvlDdv~~~~---~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~--v~------~~~~~~~~~~~l~~L~~~~~~ 326 (1355)
-=+|||||+.... .|+.. |-.+++.+ ...|..|||||+... .. ...+...-++.++..+.+.-.
T Consensus 378 ~DLLlIDDIq~l~gke~tqee---LF~l~N~l--~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~ 452 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEE---FFHTFNTL--HNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRI 452 (617)
T ss_pred CCEEEEehhccccCCHHHHHH---HHHHHHHH--HhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHH
Confidence 4588999997652 22211 11111111 233556888887641 10 113445678999999999999
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHH
Q 000679 327 CLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAI 360 (1355)
Q Consensus 327 ~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 360 (1355)
.++++++..... .--++++.-|++++.+..-.+
T Consensus 453 aIL~kka~~r~l-~l~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 453 AILRKKAVQEQL-NAPPEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHhccCCHHHH
Confidence 999998843221 112567778888877665433
No 146
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=4.3e-06 Score=86.38 Aligned_cols=63 Identities=25% Similarity=0.277 Sum_probs=33.7
Q ss_pred cccccccccCCCCCCccccccccccccCCccEEeeccCcCcceeccccccccccccCCCcccccccCCCCceEEEEcccc
Q 000679 998 FPKLLYLRLIDLPKLMGFSIGIHSVEFPSLLELQIDDCPNMKRFISISSSQDNIHANPQPLFDEKVGTPNLMTLRVSYCH 1077 (1355)
Q Consensus 998 l~~L~~L~l~~l~~l~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~l~~~~~~~f~~~~~l~~L~~L~l~~c~ 1077 (1355)
+++|.+|+++++..++.-.. .....++.|++|.++.|..+..- .|-+....|+|.+|++.+|-
T Consensus 312 cp~l~~LDLSD~v~l~~~~~-~~~~kf~~L~~lSlsRCY~i~p~----------------~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKNDCF-QEFFKFNYLQHLSLSRCYDIIPE----------------TLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred CCceeeeccccccccCchHH-HHHHhcchheeeehhhhcCCChH----------------HeeeeccCcceEEEEecccc
Confidence 44444555555444443111 11124778888888888654211 11112233889999998883
No 147
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.48 E-value=0.00075 Score=86.75 Aligned_cols=164 Identities=15% Similarity=0.212 Sum_probs=91.8
Q ss_pred cccchhHHHHHHHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHHhhhc---CC-CEEEEEEeCCCCCHHHHHHHHHHh
Q 000679 156 EQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDK---LF-DKVVFVEVTQTPDLQTIQNKLSSD 231 (1355)
Q Consensus 156 ~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F-~~~~wv~~s~~~~~~~~~~~i~~~ 231 (1355)
..++||+++++++++.|......-+.++|++|+|||++|+.++.+..... .. +..+|. + +...++ .
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~----a- 248 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL----A- 248 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh----c-
Confidence 45789999999999999865555667999999999999999999864221 11 334443 1 111111 1
Q ss_pred hccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCccccccccc-cC-CCCCCccccCCCCCCCcEEEEEeCchhhh----
Q 000679 232 LELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNLDA-VG-IPFGDVKKERNDDRSRCTVLLTSRNRDVL---- 305 (1355)
Q Consensus 232 l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~-~~-~~~~~~~~~~~~~~~~s~ilvTtR~~~v~---- 305 (1355)
+.... ...++.+..+.+.+.+.++.+|++|++.....-.. -+ ....++++..+..+ .-++|.+|...+..
T Consensus 249 --g~~~~-ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~ey~~~ie 324 (821)
T CHL00095 249 --GTKYR-GEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDEYRKHIE 324 (821)
T ss_pred --cCCCc-cHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHHHHHHHh
Confidence 11111 12334455555555545789999999964311000 00 00001111111122 24455555544321
Q ss_pred --hhcCCCcceEecCCCCHHHHHHHHHHHh
Q 000679 306 --CNDMNSQKFFLIEVLSYEEAWCLFEKIV 333 (1355)
Q Consensus 306 --~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 333 (1355)
.........+.++..+.++...+++...
T Consensus 325 ~D~aL~rRf~~I~v~ep~~~e~~aILr~l~ 354 (821)
T CHL00095 325 KDPALERRFQPVYVGEPSVEETIEILFGLR 354 (821)
T ss_pred cCHHHHhcceEEecCCCCHHHHHHHHHHHH
Confidence 1112234578889999999888876543
No 148
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.48 E-value=0.00081 Score=79.45 Aligned_cols=182 Identities=14% Similarity=0.155 Sum_probs=105.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCC-CEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhc
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLF-DKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKN 255 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 255 (1355)
...+.|+|..|+|||.||+.+++..... +. ..++|++. .++...+...+... . ...+.+.+..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~-~~~~~v~yi~~------~~f~~~~~~~~~~~-----~----~~~f~~~~~~ 193 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITS------EKFLNDLVDSMKEG-----K----LNEFREKYRK 193 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHh-CCCCeEEEEEH------HHHHHHHHHHHhcc-----c----HHHHHHHHHh
Confidence 3469999999999999999999987533 23 35667754 44555555554321 1 1233444432
Q ss_pred CCeEEEEEeCccccc---cc-cccCCCCCCccccCCCCCCCcEEEEEeCc-hhhh-------hhcCCCcceEecCCCCHH
Q 000679 256 VKRVLVILDNIWKLL---NL-DAVGIPFGDVKKERNDDRSRCTVLLTSRN-RDVL-------CNDMNSQKFFLIEVLSYE 323 (1355)
Q Consensus 256 ~k~~LlvlDdv~~~~---~~-~~~~~~~~~~~~~~~~~~~~s~ilvTtR~-~~v~-------~~~~~~~~~~~l~~L~~~ 323 (1355)
+.-+|++||++... .+ +.+...+.. + ...|..||+||.. +.-. .......-++.+++.+.+
T Consensus 194 -~~dvLlIDDi~~l~~~~~~q~elf~~~n~----l--~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e 266 (440)
T PRK14088 194 -KVDVLLIDDVQFLIGKTGVQTELFHTFNE----L--HDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEE 266 (440)
T ss_pred -cCCEEEEechhhhcCcHHHHHHHHHHHHH----H--HHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHH
Confidence 45589999997542 11 112111111 1 2234578888753 2211 112333458899999999
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHH------HHhcC--ChHHHHHHHHHH
Q 000679 324 EAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIAN------ALKNK--RLYVWNDSLERL 382 (1355)
Q Consensus 324 ~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~------~l~~~--~~~~w~~~l~~l 382 (1355)
.-..++++.+..... .--+++...|++.+.|.--.+.-+-. .+..+ +....++++..+
T Consensus 267 ~r~~IL~~~~~~~~~-~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 267 TRKKIARKMLEIEHG-ELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred HHHHHHHHHHHhcCC-CCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 999999988843211 11256788888888876544322211 11222 556666666654
No 149
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.48 E-value=0.0021 Score=78.22 Aligned_cols=194 Identities=15% Similarity=0.133 Sum_probs=106.0
Q ss_pred cCCccccchhHHHHHHHHHHhhcCC-ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHH
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLKDTN-VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSS 230 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 230 (1355)
|.....++|.+..++.+.+++..+. ...+-++|+.|+||||+|+.++...-....-+ ....+.-...+.|..
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~~ 84 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAITN 84 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHhc
Confidence 3455678899999999999988654 35567899999999999999987753211000 001111111112211
Q ss_pred hhcccc---cc-CCCHHHHHHHHHHHHh----cCCeEEEEEeCcccc--ccccccCCCCCCccccCCCCCCCcEEE-EEe
Q 000679 231 DLELEF---KQ-NENVFQRAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVL-LTS 299 (1355)
Q Consensus 231 ~l~~~~---~~-~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~s~il-vTt 299 (1355)
....+. +. .....+.++.+..... .+++-++|+|+++.. ..++.+...+.. -.....+| .||
T Consensus 85 g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEe-------pp~~~ifIlatt 157 (559)
T PRK05563 85 GSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEE-------PPAHVIFILATT 157 (559)
T ss_pred CCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcC-------CCCCeEEEEEeC
Confidence 110000 00 0011122233333322 236668899999765 334444333222 22344444 444
Q ss_pred CchhhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHH
Q 000679 300 RNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAI 360 (1355)
Q Consensus 300 R~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 360 (1355)
....+..........+...+++.++....+...+......- -.+.+..|++.++|.+..+
T Consensus 158 ~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i-~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 158 EPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEY-EDEALRLIARAAEGGMRDA 217 (559)
T ss_pred ChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 44433321223346788999999999888887763322111 1345778888998877543
No 150
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.47 E-value=1e-05 Score=86.20 Aligned_cols=37 Identities=22% Similarity=0.332 Sum_probs=22.8
Q ss_pred cCCCcceEEEecCCCccc-----cCcccccccCCcEEEecCC
Q 000679 557 EGMNELRVVHFTRTCFLS-----LPSSLVCLISLRTLSLEGC 593 (1355)
Q Consensus 557 ~~l~~Lr~L~L~~~~~~~-----lp~~i~~L~~Lr~L~L~~~ 593 (1355)
..+..+..++|+||.+.. +-+.+.+.+.||.-++++-
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ 68 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM 68 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh
Confidence 456677777777776633 4444555566666666654
No 151
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.46 E-value=7.7e-05 Score=91.95 Aligned_cols=106 Identities=21% Similarity=0.220 Sum_probs=77.9
Q ss_pred CCCceEEEEeeccCCCCcccChhhhcCCCcceEEEecCCCccccCcccccccCCcEEEecCCCCCC---ccccccccccc
Q 000679 532 ECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGD---VAIVGQLKKLE 608 (1355)
Q Consensus 532 ~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~---p~~i~~L~~L~ 608 (1355)
-+|.||+|.+.+-.- ...-...++.++++|+.||+|+++++.+ ..+++|+||+.|.+.+=.+.. ...+.+|++|+
T Consensus 146 ~LPsL~sL~i~~~~~-~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQF-DNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCcee-cchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 578899998876411 1111234567889999999999999888 678999999999988877664 57788899999
Q ss_pred eeecccCCCCccchhh-------hccccCcEEeccCcc
Q 000679 609 ILSFRNSDIQQLPREI-------GQLVQLRLLDLRNCR 639 (1355)
Q Consensus 609 ~L~L~~~~l~~lP~~i-------~~L~~L~~L~l~~~~ 639 (1355)
+||+|...-..-|.-+ ..|++||.||.|+..
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 9999987443333211 247888999888744
No 152
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.46 E-value=0.0012 Score=78.92 Aligned_cols=182 Identities=18% Similarity=0.215 Sum_probs=105.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcC
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNV 256 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (1355)
...+.|+|+.|+|||+||+.+++....+..-..++|++. .++...+...+... ....+.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~---------~~~~~~~~~~-- 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS------EKFTNDFVNALRNN---------TMEEFKEKYR-- 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHcC---------cHHHHHHHHh--
Confidence 356899999999999999999999764322234566654 33344444443211 1223444554
Q ss_pred CeEEEEEeCcccccc---c-cccCCCCCCccccCCCCCCCcEEEEEeCchhhh--------hhcCCCcceEecCCCCHHH
Q 000679 257 KRVLVILDNIWKLLN---L-DAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVL--------CNDMNSQKFFLIEVLSYEE 324 (1355)
Q Consensus 257 k~~LlvlDdv~~~~~---~-~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~--------~~~~~~~~~~~l~~L~~~~ 324 (1355)
+.-+||+||++.... + +.+...+.. + ...|..||+||....-. ........++++++.+.++
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~----l--~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~ 284 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNA----L--HEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLET 284 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHH----H--HHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHH
Confidence 344899999975421 1 122111111 1 12344578877654211 1133445689999999999
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHH----HHHHH--HhcC--ChHHHHHHHHHH
Q 000679 325 AWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIK----TIANA--LKNK--RLYVWNDSLERL 382 (1355)
Q Consensus 325 ~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~----~~~~~--l~~~--~~~~w~~~l~~l 382 (1355)
-..++++++.... ..--+++...|++.++|..-.+. .+..+ +..+ +....++++..+
T Consensus 285 r~~il~~~~~~~~-~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 285 RIAILKKKAEEEG-IDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 9999999884321 11224668889999988775433 22221 1122 556667766654
No 153
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.43 E-value=0.0018 Score=73.49 Aligned_cols=138 Identities=19% Similarity=0.214 Sum_probs=82.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhc
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKN 255 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 255 (1355)
....+.|+|..|.|||-|++++.+.......=..+++++ .+.....++..+.. .....+++.+ +
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~------se~f~~~~v~a~~~---------~~~~~Fk~~y-~ 175 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT------SEDFTNDFVKALRD---------NEMEKFKEKY-S 175 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc------HHHHHHHHHHHHHh---------hhHHHHHHhh-c
Confidence 367899999999999999999999986432223455543 33344444443321 1233444444 1
Q ss_pred CCeEEEEEeCccccccccccCCCCCCccccCCCCCCCcEEEEEeCchhhh--------hhcCCCcceEecCCCCHHHHHH
Q 000679 256 VKRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVL--------CNDMNSQKFFLIEVLSYEEAWC 327 (1355)
Q Consensus 256 ~k~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~--------~~~~~~~~~~~l~~L~~~~~~~ 327 (1355)
-=++++||++-....+.....|-..+..+ ...|-.||+|++...-. ...+...-++.+++.+.+....
T Consensus 176 --~dlllIDDiq~l~gk~~~qeefFh~FN~l--~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~a 251 (408)
T COG0593 176 --LDLLLIDDIQFLAGKERTQEEFFHTFNAL--LENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLA 251 (408)
T ss_pred --cCeeeechHhHhcCChhHHHHHHHHHHHH--HhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHH
Confidence 23788999976533221111111111111 22344899998665321 1134445789999999999999
Q ss_pred HHHHHh
Q 000679 328 LFEKIV 333 (1355)
Q Consensus 328 lf~~~~ 333 (1355)
++.+++
T Consensus 252 iL~kka 257 (408)
T COG0593 252 ILRKKA 257 (408)
T ss_pred HHHHHH
Confidence 999977
No 154
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.41 E-value=0.002 Score=74.96 Aligned_cols=181 Identities=17% Similarity=0.180 Sum_probs=97.7
Q ss_pred CccccchhHHHHHHHHHHhh----c---------CCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCC
Q 000679 154 AYEQFDSRMKIFQNIMEVLK----D---------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD 220 (1355)
Q Consensus 154 ~~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 220 (1355)
.+.++.|.+..++++.+.+. . ...+-+.++|++|+|||++|+.+++... ..| +.+...
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~--~~f-----i~V~~s-- 251 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS--ATF-----LRVVGS-- 251 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC--CCE-----EEEecc--
Confidence 44567788888888887764 1 2345688999999999999999999763 223 222111
Q ss_pred HHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCcccccccc--c-------cCCCCCCccccCC--CC
Q 000679 221 LQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNLD--A-------VGIPFGDVKKERN--DD 289 (1355)
Q Consensus 221 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~--~-------~~~~~~~~~~~~~--~~ 289 (1355)
++. ..... .....+..+.+....+.+.+|+||+++....-. . +...+..++.... ..
T Consensus 252 --eL~----~k~~G------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~ 319 (438)
T PTZ00361 252 --ELI----QKYLG------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS 319 (438)
T ss_pred --hhh----hhhcc------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc
Confidence 111 11100 111223333333344577899999986431100 0 0000000000000 02
Q ss_pred CCCcEEEEEeCchhhhhhc-C---CCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh
Q 000679 290 RSRCTVLLTSRNRDVLCND-M---NSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLP 357 (1355)
Q Consensus 290 ~~~s~ilvTtR~~~v~~~~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 357 (1355)
..+.+||+||...+..... . .....+.+...+.++..++|..+.......++. ....++..+.|+-
T Consensus 320 ~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dv--dl~~la~~t~g~s 389 (438)
T PTZ00361 320 RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDV--DLEEFIMAKDELS 389 (438)
T ss_pred cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCc--CHHHHHHhcCCCC
Confidence 3456788888765443211 1 124578999999999999999887432222111 1234555555543
No 155
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.41 E-value=0.002 Score=76.08 Aligned_cols=163 Identities=17% Similarity=0.192 Sum_probs=90.8
Q ss_pred CccccchhHHHHHHHHHHhhc-------------CCceEEEEEecCCCcHHHHHHHHHHHHhhhc---CCCEEEEEEeCC
Q 000679 154 AYEQFDSRMKIFQNIMEVLKD-------------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDK---LFDKVVFVEVTQ 217 (1355)
Q Consensus 154 ~~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~wv~~s~ 217 (1355)
.+.++.|.+..++++.+.+.- ...+-+.++|++|+|||++|+.+++...... .+....|+.++.
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccc
Confidence 345577899999888887641 2345689999999999999999999864221 122344555433
Q ss_pred CCCHHHHHHHHHHhhccccccCCCHHHHHHHHHH----HHhcCCeEEEEEeCcccccc---------c-----cccCCCC
Q 000679 218 TPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQ----RLKNVKRVLVILDNIWKLLN---------L-----DAVGIPF 279 (1355)
Q Consensus 218 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~l~~~k~~LlvlDdv~~~~~---------~-----~~~~~~~ 279 (1355)
. ++. ..... .....+..+.+ ....+++++|++|+++.... . ..+...+
T Consensus 260 ~----eLl----~kyvG------ete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 260 P----ELL----NKYVG------ETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred h----hhc----ccccc------hHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 1 111 11100 01111222222 22234789999999975411 0 0111111
Q ss_pred CCccccCCCCCCCcEEEEEeCchhhh-hhcC---CCcceEecCCCCHHHHHHHHHHHhCC
Q 000679 280 GDVKKERNDDRSRCTVLLTSRNRDVL-CNDM---NSQKFFLIEVLSYEEAWCLFEKIVGD 335 (1355)
Q Consensus 280 ~~~~~~~~~~~~~s~ilvTtR~~~v~-~~~~---~~~~~~~l~~L~~~~~~~lf~~~~~~ 335 (1355)
.. . ....+..||.||-..... .... .....++++..+.++..++|+.+...
T Consensus 326 Dg----l-~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 326 DG----V-ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred cc----c-ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 11 0 012344556666544322 1111 22456899999999999999998754
No 156
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.39 E-value=8.4e-05 Score=91.62 Aligned_cols=104 Identities=21% Similarity=0.290 Sum_probs=73.6
Q ss_pred ceEEEEeeccCCCCcccChhhhcCCCcceEEEecCCCccc--cCcccccccCCcEEEecCCCCCCccccccccccceeec
Q 000679 535 KLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLS--LPSSLVCLISLRTLSLEGCQVGDVAIVGQLKKLEILSF 612 (1355)
Q Consensus 535 ~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~~~~--lp~~i~~L~~Lr~L~L~~~~i~~p~~i~~L~~L~~L~L 612 (1355)
+|+.|.+.+........|..+...++.||.|.+++-.+.. +-.-..++++|+.||+|+++++....|++|+|||+|.+
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~m 202 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSM 202 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhc
Confidence 3444444443233345566666778899999988866533 23334577889999999999888888889999999988
Q ss_pred ccCCCCccc--hhhhccccCcEEeccCc
Q 000679 613 RNSDIQQLP--REIGQLVQLRLLDLRNC 638 (1355)
Q Consensus 613 ~~~~l~~lP--~~i~~L~~L~~L~l~~~ 638 (1355)
++=.+..-+ ..+.+|++|++||+|..
T Consensus 203 rnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 203 RNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred cCCCCCchhhHHHHhcccCCCeeecccc
Confidence 876655433 35678888888888873
No 157
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.38 E-value=0.0037 Score=72.42 Aligned_cols=182 Identities=14% Similarity=0.183 Sum_probs=98.8
Q ss_pred CccccchhHHHHHHHHHHhh----c---------CCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCC
Q 000679 154 AYEQFDSRMKIFQNIMEVLK----D---------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD 220 (1355)
Q Consensus 154 ~~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 220 (1355)
...++.|-+..++++.+.+. . ...+-|.++|++|+|||++|+.+++.... .| +.+..
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~--~f-----i~i~~--- 212 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA--TF-----IRVVG--- 212 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC--CE-----EEEeh---
Confidence 34567788888888877653 1 23567899999999999999999987532 22 22211
Q ss_pred HHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCcccccc--------cc-ccCCCCCCccccCC--CC
Q 000679 221 LQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLN--------LD-AVGIPFGDVKKERN--DD 289 (1355)
Q Consensus 221 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~--------~~-~~~~~~~~~~~~~~--~~ 289 (1355)
.++ ...... .....+..+.+......+.+|++|+++.... .+ .+...+..++.... ..
T Consensus 213 -s~l----~~k~~g------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~ 281 (398)
T PTZ00454 213 -SEF----VQKYLG------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ 281 (398)
T ss_pred -HHH----HHHhcc------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC
Confidence 111 111110 1112233444444445789999999875310 00 00000001111110 12
Q ss_pred CCCcEEEEEeCchhhh-hhcC---CCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH
Q 000679 290 RSRCTVLLTSRNRDVL-CNDM---NSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPV 358 (1355)
Q Consensus 290 ~~~s~ilvTtR~~~v~-~~~~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL 358 (1355)
..+..||+||...... .... .....+.+...+.++-.++|+.+.......++. ...++++...|.--
T Consensus 282 ~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dv--d~~~la~~t~g~sg 352 (398)
T PTZ00454 282 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEV--DLEDFVSRPEKISA 352 (398)
T ss_pred CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCccc--CHHHHHHHcCCCCH
Confidence 3466788888765433 1112 224578899999999888888776432222211 13456666766543
No 158
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.37 E-value=5.5e-05 Score=89.79 Aligned_cols=102 Identities=25% Similarity=0.401 Sum_probs=60.9
Q ss_pred CCCceEEEEeeccCCCCcccChhhhcCCCcceEEEecCCCccccCcccccccCCcEEEecCCCCCCccccccccccceee
Q 000679 532 ECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGDVAIVGQLKKLEILS 611 (1355)
Q Consensus 532 ~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~p~~i~~L~~L~~L~ 611 (1355)
.+.++..|.+.++ ...++... +..+.+|++|++++|.|.++.. +..+..|+.|++++|.+.....+..+..|+.++
T Consensus 93 ~~~~l~~l~l~~n--~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 93 KLKSLEALDLYDN--KIEKIENL-LSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLISDISGLESLKSLKLLD 168 (414)
T ss_pred cccceeeeecccc--chhhcccc-hhhhhcchheeccccccccccc-hhhccchhhheeccCcchhccCCccchhhhccc
Confidence 4455666666555 33333321 2556666666666666666543 555666666666666666655556666666666
Q ss_pred cccCCCCccchh-hhccccCcEEeccC
Q 000679 612 FRNSDIQQLPRE-IGQLVQLRLLDLRN 637 (1355)
Q Consensus 612 L~~~~l~~lP~~-i~~L~~L~~L~l~~ 637 (1355)
+++|.+..++.. ...+.+|+.+++.+
T Consensus 169 l~~n~i~~ie~~~~~~~~~l~~l~l~~ 195 (414)
T KOG0531|consen 169 LSYNRIVDIENDELSELISLEELDLGG 195 (414)
T ss_pred CCcchhhhhhhhhhhhccchHHHhccC
Confidence 666666665543 45566666666666
No 159
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.37 E-value=1.8e-05 Score=97.49 Aligned_cols=121 Identities=17% Similarity=0.203 Sum_probs=71.3
Q ss_pred CCCccEEEEecCCCcccccchhhHHhcccccEEEEccc-cchhhhhccccccccccccccCcccCCCCCcccccCCccee
Q 000679 835 FSNLRIIKVGECDKLRHLFSFSMAKNLLRLQKISVFDC-KSLEIIVGLDMEKQRTTLGFNGITTKDDPDEKVIFPSLEEL 913 (1355)
Q Consensus 835 ~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c-~~l~~i~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~L~~L 913 (1355)
++.|+.|.+.+|..+....-.......+.|++|.+++| ......+. ........+++|+.|
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~------------------~~~~~~~~~~~L~~l 248 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPL------------------LLLLLLSICRKLKSL 248 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchh------------------HhhhhhhhcCCcCcc
Confidence 45666666666655554221223456666777776663 11111000 000112235778888
Q ss_pred ccccccccccccCCCCCCCCcCCCccEEEEecccccccccchhHHhhhcccceeEEeecccc
Q 000679 914 DLYSLITIEKLWPKQFQGMSSCQNLTKVTVAFCDRLKYLFSYSMVNSLVQLQHLEICYCWSM 975 (1355)
Q Consensus 914 ~l~~~~~l~~~~~~~~~~l~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l 975 (1355)
+++.+..+.+....... ..+++|+.|.+.+|..+++..-......+++|++|++++|..+
T Consensus 249 ~l~~~~~isd~~l~~l~--~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 249 DLSGCGLVTDIGLSALA--SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred chhhhhccCchhHHHHH--hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 88877544432211111 2378999999999998777655566678889999999999877
No 160
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.37 E-value=0.023 Score=59.74 Aligned_cols=175 Identities=17% Similarity=0.146 Sum_probs=101.0
Q ss_pred cCCccccchhHHHHHHHHHHhh-----cCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHH
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLK-----DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQN 226 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 226 (1355)
|....+|+|.++.++++-=++. +....-|.++|++|.||||||.-++++..++ + -++-+....
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~----k~tsGp~le------ 89 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--L----KITSGPALE------ 89 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--e----Eeccccccc------
Confidence 5566789999988888765554 3456789999999999999999999998644 1 111111101
Q ss_pred HHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCccccc---------cccccCCCCCCccccCCCCCCCc----
Q 000679 227 KLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL---------NLDAVGIPFGDVKKERNDDRSRC---- 293 (1355)
Q Consensus 227 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~---------~~~~~~~~~~~~~~~~~~~~~~s---- 293 (1355)
...+.+ .+...|+ +.=.+.+|.+.... ..+++.... ..+.++++
T Consensus 90 --------------K~gDla-aiLt~Le--~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI------~IG~gp~Arsv~ 146 (332)
T COG2255 90 --------------KPGDLA-AILTNLE--EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDI------IIGKGPAARSIR 146 (332)
T ss_pred --------------ChhhHH-HHHhcCC--cCCeEEEehhhhcChhHHHHhhhhhhheeEEE------EEccCCccceEe
Confidence 111111 1222222 33344556654431 111111000 00122233
Q ss_pred -------EEEEEeCchhhhh-hcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 000679 294 -------TVLLTSRNRDVLC-NDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKT 362 (1355)
Q Consensus 294 -------~ilvTtR~~~v~~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 362 (1355)
-|=.|||.-.+.. .......+.+++.-+.+|-.+...+.+..-.. +--++.+.+|+++..|-|--+.-
T Consensus 147 ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i-~i~~~~a~eIA~rSRGTPRIAnR 222 (332)
T COG2255 147 LDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI-EIDEEAALEIARRSRGTPRIANR 222 (332)
T ss_pred ccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC-CCChHHHHHHHHhccCCcHHHHH
Confidence 3556888765432 11223457889999999999999988832111 11234588999999999964433
No 161
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0075 Score=65.37 Aligned_cols=206 Identities=19% Similarity=0.220 Sum_probs=117.9
Q ss_pred cCCccccchhHHHHHHHHHHhh----c---------CCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCC
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLK----D---------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQT 218 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 218 (1355)
...+.++-|-++.+++|.+... + ..++=|-++|++|.|||-||++|+++-... | +.|..+
T Consensus 147 dvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At--F-----IrvvgS 219 (406)
T COG1222 147 DVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT--F-----IRVVGS 219 (406)
T ss_pred CCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce--E-----EEeccH
Confidence 3455667789999999988775 1 245778999999999999999999986432 3 333221
Q ss_pred CCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCcccccc--cc-------ccCCCCCCccccCCC-
Q 000679 219 PDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLN--LD-------AVGIPFGDVKKERND- 288 (1355)
Q Consensus 219 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~--~~-------~~~~~~~~~~~~~~~- 288 (1355)
++.+..-++ ....+..+.+.-+...+..|.+|.++.... .+ ++...+-.++.++.+
T Consensus 220 --------ElVqKYiGE------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGF 285 (406)
T COG1222 220 --------ELVQKYIGE------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGF 285 (406)
T ss_pred --------HHHHHHhcc------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCC
Confidence 222222211 223556666666666889999999875411 00 000000001111111
Q ss_pred -CCCCcEEEEEeCchhhh---hhcCCC-cceEecCCCCHHHHHHHHHHHhCCC--CCCcchHHHHHHHHHHhCCCh----
Q 000679 289 -DRSRCTVLLTSRNRDVL---CNDMNS-QKFFLIEVLSYEEAWCLFEKIVGDS--AKASDFRVIADEIVRRCGGLP---- 357 (1355)
Q Consensus 289 -~~~~s~ilvTtR~~~v~---~~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~~~~~i~~~c~glP---- 357 (1355)
.....|||..|-..++. ....+. ...+++..-+.+.-.++|+-++..- ...-++ +.+++.+.|.-
T Consensus 286 D~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~sGAdl 361 (406)
T COG1222 286 DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFSGADL 361 (406)
T ss_pred CCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCchHHH
Confidence 23456888888665443 111222 3577887666666677888777432 223343 35667776665
Q ss_pred HHHHHHHHHHhcC------ChHHHHHHHHHH
Q 000679 358 VAIKTIANALKNK------RLYVWNDSLERL 382 (1355)
Q Consensus 358 Lai~~~~~~l~~~------~~~~w~~~l~~l 382 (1355)
-|+.+=|++++-+ +.+++..+.++.
T Consensus 362 kaictEAGm~AiR~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 362 KAICTEAGMFAIRERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred HHHHHHHhHHHHHhccCeecHHHHHHHHHHH
Confidence 3455556666322 445555555543
No 162
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.34 E-value=0.0031 Score=71.12 Aligned_cols=155 Identities=15% Similarity=0.150 Sum_probs=89.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhc--------------------CCCEEEEEEeCCCCCHHHHHHHHHHhhcccc
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDK--------------------LFDKVVFVEVTQTPDLQTIQNKLSSDLELEF 236 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 236 (1355)
...+.++|+.|+||||+|+.++...--.. |-| ..|+.-...
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~~~~~------------------ 82 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPD-NFVLEPEEA------------------ 82 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccCC------------------
Confidence 45688999999999999999998764221 111 122211000
Q ss_pred ccCCCHHHHHHHHHHHHhc----CCeEEEEEeCcccc--ccccccCCCCCCccccCCCCCCCcEEEEEeCchh-hhhhcC
Q 000679 237 KQNENVFQRAEKLRQRLKN----VKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRD-VLCNDM 309 (1355)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~----~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~-v~~~~~ 309 (1355)
......+.++.+.+.+.. +++-++|+|+++.. ...+.+...+-. -..++.+|+||.+.. +.....
T Consensus 83 -~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEE-------Pp~~~~fiL~t~~~~~ll~TI~ 154 (328)
T PRK05707 83 -DKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEE-------PSGDTVLLLISHQPSRLLPTIK 154 (328)
T ss_pred -CCCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhC-------CCCCeEEEEEECChhhCcHHHH
Confidence 000112233333333321 24445577999876 334444333332 335667777776653 332123
Q ss_pred CCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 000679 310 NSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 363 (1355)
Q Consensus 310 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 363 (1355)
.....+.+.+++.+++.+.+.+.... . ..+.+..++..++|.|+.+..+
T Consensus 155 SRc~~~~~~~~~~~~~~~~L~~~~~~-~----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 155 SRCQQQACPLPSNEESLQWLQQALPE-S----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred hhceeeeCCCcCHHHHHHHHHHhccc-C----ChHHHHHHHHHcCCCHHHHHHH
Confidence 33467999999999999988775421 1 1233567889999999765443
No 163
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.31 E-value=0.006 Score=68.43 Aligned_cols=196 Identities=12% Similarity=0.130 Sum_probs=110.7
Q ss_pred cccchhHHHHHHHHHHhhcCCc-eEEEEEecCCCcHHHHHHHHHHHHhhhc-------------CCCEEEEEEeCCCCCH
Q 000679 156 EQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDK-------------LFDKVVFVEVTQTPDL 221 (1355)
Q Consensus 156 ~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------~F~~~~wv~~s~~~~~ 221 (1355)
..++|.+..++.+...+..+.. ...-++|+.|+||+++|..+++..-... ......|+.-....+-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 3578999999999999887664 7889999999999999999988753221 1111233321100000
Q ss_pred HHHHHHHHHhhccc-cccCCCHHHHHHHHHHHHhc----CCeEEEEEeCccccc--cccccCCCCCCccccCCCCCCCcE
Q 000679 222 QTIQNKLSSDLELE-FKQNENVFQRAEKLRQRLKN----VKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCT 294 (1355)
Q Consensus 222 ~~~~~~i~~~l~~~-~~~~~~~~~~~~~l~~~l~~----~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ 294 (1355)
..+-..-+...+.. .....-..+.++.+.+.+.. +++-++|+|+++... ..+.+...+-. -. .+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEE-------Pp-~~~ 155 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE-------PG-NGT 155 (314)
T ss_pred cccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhC-------CC-CCe
Confidence 00000111111100 00001122334555555542 466789999987663 34444333322 22 334
Q ss_pred EEEEe-CchhhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 000679 295 VLLTS-RNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 363 (1355)
Q Consensus 295 ilvTt-R~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 363 (1355)
+|++| +...+..........+.+.++++++..+.+.+........ .....++..++|.|..+...
T Consensus 156 fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~----~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 156 LILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILN----INFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccch----hHHHHHHHHcCCCHHHHHHH
Confidence 55444 4444333223345789999999999999998875321111 11357899999999765443
No 164
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.28 E-value=0.0021 Score=74.80 Aligned_cols=138 Identities=19% Similarity=0.208 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccC
Q 000679 160 SRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQN 239 (1355)
Q Consensus 160 gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~ 239 (1355)
.|.....++.+.+..... ++.|.|+-++||||+++.+....... .+++..-+......-..+
T Consensus 21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l~d------------ 82 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIELLD------------ 82 (398)
T ss_pred hHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhHHH------------
Confidence 445556666666554433 99999999999999996666554321 555544332111110011
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEEeCccccccccccCCCCCCccccCCCCCCCcEEEEEeCchhhh-----hhcCCCcce
Q 000679 240 ENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVL-----CNDMNSQKF 314 (1355)
Q Consensus 240 ~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~-----~~~~~~~~~ 314 (1355)
....+...-.. ++..|+||.|.....|......+.+ .+.. +|++|+-+.... ..-.+....
T Consensus 83 -----~~~~~~~~~~~-~~~yifLDEIq~v~~W~~~lk~l~d-------~~~~-~v~itgsss~ll~~~~~~~L~GR~~~ 148 (398)
T COG1373 83 -----LLRAYIELKER-EKSYIFLDEIQNVPDWERALKYLYD-------RGNL-DVLITGSSSSLLSKEISESLAGRGKD 148 (398)
T ss_pred -----HHHHHHHhhcc-CCceEEEecccCchhHHHHHHHHHc-------cccc-eEEEECCchhhhccchhhhcCCCcee
Confidence 11111222122 6789999999999999887666655 4444 888888776433 222344668
Q ss_pred EecCCCCHHHHHHHH
Q 000679 315 FLIEVLSYEEAWCLF 329 (1355)
Q Consensus 315 ~~l~~L~~~~~~~lf 329 (1355)
+++-||+-.|...+-
T Consensus 149 ~~l~PlSF~Efl~~~ 163 (398)
T COG1373 149 LELYPLSFREFLKLK 163 (398)
T ss_pred EEECCCCHHHHHhhc
Confidence 999999998887653
No 165
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.27 E-value=0.00035 Score=68.16 Aligned_cols=69 Identities=22% Similarity=0.236 Sum_probs=42.2
Q ss_pred EEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCC-e
Q 000679 180 IGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVK-R 258 (1355)
Q Consensus 180 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k-~ 258 (1355)
|.|+|++|+||||+|+.+++.... ..+.++.+...+. ........+..+.+...... +
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~-----~~~~i~~~~~~~~----------------~~~~~~~~i~~~~~~~~~~~~~ 59 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF-----PFIEIDGSELISS----------------YAGDSEQKIRDFFKKAKKSAKP 59 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS-----EEEEEETTHHHTS----------------STTHHHHHHHHHHHHHHHTSTS
T ss_pred CEEECcCCCCeeHHHHHHHhhccc-----ccccccccccccc----------------cccccccccccccccccccccc
Confidence 579999999999999999999741 2344443321100 00122233333444443334 7
Q ss_pred EEEEEeCcccc
Q 000679 259 VLVILDNIWKL 269 (1355)
Q Consensus 259 ~LlvlDdv~~~ 269 (1355)
.+|++||++..
T Consensus 60 ~vl~iDe~d~l 70 (132)
T PF00004_consen 60 CVLFIDEIDKL 70 (132)
T ss_dssp EEEEEETGGGT
T ss_pred eeeeeccchhc
Confidence 99999999765
No 166
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.20 E-value=0.0036 Score=75.91 Aligned_cols=181 Identities=15% Similarity=0.171 Sum_probs=94.2
Q ss_pred CccccchhHHHHHHHHHHhh---c---------CCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCH
Q 000679 154 AYEQFDSRMKIFQNIMEVLK---D---------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDL 221 (1355)
Q Consensus 154 ~~~~~~gr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 221 (1355)
...++.|-+..++++.+++. . ...+-+.++|++|+|||++|+.+++.... . ++.++.
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~--~-----~~~i~~---- 121 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV--P-----FFSISG---- 121 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC--C-----eeeccH----
Confidence 34567787766665554432 1 12345889999999999999999987532 1 222221
Q ss_pred HHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCccccccccc--c-------CCCCCCccccC--CCCC
Q 000679 222 QTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNLDA--V-------GIPFGDVKKER--NDDR 290 (1355)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~--~-------~~~~~~~~~~~--~~~~ 290 (1355)
.++..... + . ....+..+.+..+...+.+|++||++....-.. . ...+..++... ....
T Consensus 122 ~~~~~~~~---g------~-~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 122 SDFVEMFV---G------V-GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred HHHHHHHh---c------c-cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 11111110 0 0 112233333333334678999999966411000 0 00000000000 0123
Q ss_pred CCcEEEEEeCchhhh---hhc-CCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh
Q 000679 291 SRCTVLLTSRNRDVL---CND-MNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLP 357 (1355)
Q Consensus 291 ~~s~ilvTtR~~~v~---~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 357 (1355)
.+..||.||...... ... -.....+.+...+.++-.++|+.+........+ .....+++.+.|.-
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~--~~l~~la~~t~G~s 260 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD--VDLKAVARRTPGFS 260 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc--hhHHHHHHhCCCCC
Confidence 445566667554311 101 123467889999999999999888744322211 12447888887744
No 167
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.20 E-value=0.017 Score=62.02 Aligned_cols=168 Identities=17% Similarity=0.235 Sum_probs=104.6
Q ss_pred cccchhHHHHHHHHHHhh----cCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCC-CEEEEEEeCCCCCH-HHHHHHHH
Q 000679 156 EQFDSRMKIFQNIMEVLK----DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLF-DKVVFVEVTQTPDL-QTIQNKLS 229 (1355)
Q Consensus 156 ~~~~gr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~-~~~~~~i~ 229 (1355)
..++|-.++-.++-.|+. .++..-+.|+|+.|.|||+|...+..+. +.| +..+-|........ .-.++.|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~---q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI---QENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH---HhcCCeEEEEEECccchhhHHHHHHHH
Confidence 456787777778777776 3455678899999999999998888872 223 34445555544433 22455555
Q ss_pred Hhhccccc----cCCCHHHHHHHHHHHHhcC-----CeEEEEEeCcccccc-------ccccCCCCCCccccCCCCCCCc
Q 000679 230 SDLELEFK----QNENVFQRAEKLRQRLKNV-----KRVLVILDNIWKLLN-------LDAVGIPFGDVKKERNDDRSRC 293 (1355)
Q Consensus 230 ~~l~~~~~----~~~~~~~~~~~l~~~l~~~-----k~~LlvlDdv~~~~~-------~~~~~~~~~~~~~~~~~~~~~s 293 (1355)
+++..+.. ...+..+....+...|+.+ .++.+|+|.++--.. ++-+...-. ...+-|
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs-------~r~Pic 173 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQS-------ARAPIC 173 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhh-------cCCCeE
Confidence 55543322 2233445566677777653 458888888754321 111111111 156778
Q ss_pred EEEEEeCchhhh------hhcCCCcceEecCCCCHHHHHHHHHHHh
Q 000679 294 TVLLTSRNRDVL------CNDMNSQKFFLIEVLSYEEAWCLFEKIV 333 (1355)
Q Consensus 294 ~ilvTtR~~~v~------~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 333 (1355)
-|-+|||-.-.. ........++-+..++-++...++++..
T Consensus 174 iig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 174 IIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred EEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 899999987332 1133334577788889999999998877
No 168
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.18 E-value=5.1e-05 Score=88.03 Aligned_cols=108 Identities=23% Similarity=0.231 Sum_probs=84.5
Q ss_pred hcCCCcceEEEecCCCccccCcccccccCCcEEEecCCCCCCcccccc-ccccceeecccCCCCccchhhhccccCcEEe
Q 000679 556 FEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGDVAIVGQ-LKKLEILSFRNSDIQQLPREIGQLVQLRLLD 634 (1355)
Q Consensus 556 ~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~p~~i~~-L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~ 634 (1355)
+.-+.+|+.|||++|.+.+.- .+..|.+|+.|||++|.+...+.++. =.+|+.|++++|.++.|- +|.+|.+|++||
T Consensus 183 Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~-gie~LksL~~LD 260 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLR-GIENLKSLYGLD 260 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhh-hHHhhhhhhccc
Confidence 466788999999999998865 68899999999999999888332321 234999999999998885 699999999999
Q ss_pred ccCcchhhccc-hhHHhhhccccccccCCCccc
Q 000679 635 LRNCRRLQAIA-PNVISKLSRLEELYMGDSFSQ 666 (1355)
Q Consensus 635 l~~~~~l~~~p-~~~i~~L~~L~~L~l~~~~~~ 666 (1355)
++.| .+.... -..++.|..|..|++.+|.+-
T Consensus 261 lsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 261 LSYN-LLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhHh-hhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 9984 343321 122788999999999998654
No 169
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.17 E-value=0.0048 Score=79.70 Aligned_cols=157 Identities=11% Similarity=0.214 Sum_probs=89.6
Q ss_pred ccccchhHHHHHHHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHHhhhcC----CCEEEE-EEeCCCCCHHHHHHHHH
Q 000679 155 YEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKL----FDKVVF-VEVTQTPDLQTIQNKLS 229 (1355)
Q Consensus 155 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~w-v~~s~~~~~~~~~~~i~ 229 (1355)
...++||+.++.++++.|......-+.++|++|+|||++|+.++++...... ....+| +.+ ..+. +
T Consensus 172 ~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~------~~l~---a 242 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM------GALI---A 242 (852)
T ss_pred CCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH------HHHh---h
Confidence 3458899999999999998665566779999999999999999987642211 122333 221 1111 0
Q ss_pred HhhccccccCCCHHHHHHHHHHHHhc-CCeEEEEEeCcccccc---------ccccCCCCCCccccCCCCCCCcEEEEEe
Q 000679 230 SDLELEFKQNENVFQRAEKLRQRLKN-VKRVLVILDNIWKLLN---------LDAVGIPFGDVKKERNDDRSRCTVLLTS 299 (1355)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~l~~~l~~-~k~~LlvlDdv~~~~~---------~~~~~~~~~~~~~~~~~~~~~s~ilvTt 299 (1355)
+... . ......+..+.+.+.. +++.+|++|++..... ...+..+. + ....-++|-+|
T Consensus 243 ---~~~~-~-g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~-------l-~~g~i~~IgaT 309 (852)
T TIGR03346 243 ---GAKY-R-GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPA-------L-ARGELHCIGAT 309 (852)
T ss_pred ---cchh-h-hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchh-------h-hcCceEEEEeC
Confidence 0000 0 1222334444444432 4689999999975421 01111111 1 12223445444
Q ss_pred Cchhhh------hhcCCCcceEecCCCCHHHHHHHHHHHh
Q 000679 300 RNRDVL------CNDMNSQKFFLIEVLSYEEAWCLFEKIV 333 (1355)
Q Consensus 300 R~~~v~------~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 333 (1355)
...+.. .........+.+...+.++..++++...
T Consensus 310 t~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 310 TLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred cHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 433221 1012234568899999999999987664
No 170
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.14 E-value=0.023 Score=59.07 Aligned_cols=183 Identities=21% Similarity=0.228 Sum_probs=103.7
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEe-CCCCCHHHHHHHHHHhhccccccC--CCHHHHHHHHH
Q 000679 174 DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEV-TQTPDLQTIQNKLSSDLELEFKQN--ENVFQRAEKLR 250 (1355)
Q Consensus 174 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~-s~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~l~ 250 (1355)
.++.+++.++|.-|.|||++++........ +.++-|.+ ....+...+...|+..+....... .........+.
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~----d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNE----DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCC----CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 445679999999999999999955444321 12222333 345567888888888887632221 11222333444
Q ss_pred HHHhcCCe-EEEEEeCccccc--cccccCCCCCCccccCCCCCCCcEEEEEeCc--------hhhhhhcCCCcce-EecC
Q 000679 251 QRLKNVKR-VLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSRN--------RDVLCNDMNSQKF-FLIE 318 (1355)
Q Consensus 251 ~~l~~~k~-~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~--------~~v~~~~~~~~~~-~~l~ 318 (1355)
...++++| ..+++||..+.. ..+.++.. .... .....--+|+..-.. ..... ......+ |++.
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll-~nl~---~~~~~~l~ivL~Gqp~L~~~lr~~~l~e-~~~R~~ir~~l~ 198 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLL-TNLE---EDSSKLLSIVLIGQPKLRPRLRLPVLRE-LEQRIDIRIELP 198 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHH-Hhhc---ccccCceeeeecCCcccchhhchHHHHh-hhheEEEEEecC
Confidence 45556788 999999987652 22222100 0000 001111123332221 11111 1111234 8999
Q ss_pred CCCHHHHHHHHHHHhCCCCCCcc--hHHHHHHHHHHhCCChHHHHHHHH
Q 000679 319 VLSYEEAWCLFEKIVGDSAKASD--FRVIADEIVRRCGGLPVAIKTIAN 365 (1355)
Q Consensus 319 ~L~~~~~~~lf~~~~~~~~~~~~--~~~~~~~i~~~c~glPLai~~~~~ 365 (1355)
|++.++...+++.+.+....+.. -.+....|..+..|.|.+|..++.
T Consensus 199 P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 199 PLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred CcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 99999998888877743222221 245567899999999999988764
No 171
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.14 E-value=0.0033 Score=80.70 Aligned_cols=158 Identities=13% Similarity=0.196 Sum_probs=88.8
Q ss_pred CccccchhHHHHHHHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHHhhhcC----CCE-EEEEEeCCCCCHHHHHHHH
Q 000679 154 AYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKL----FDK-VVFVEVTQTPDLQTIQNKL 228 (1355)
Q Consensus 154 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~-~~wv~~s~~~~~~~~~~~i 228 (1355)
....++||+.++.++++.|......-+.++|++|+|||++|+.++........ .+. ++++.++.- .
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l------~--- 246 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL------V--- 246 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhh------h---
Confidence 33468999999999999998666667789999999999999999998642211 122 233332211 0
Q ss_pred HHhhccccccCCCHHHHHHHHHHHHh-cCCeEEEEEeCcccccc---------ccccCCCCCCccccCCCCCCCcEEEEE
Q 000679 229 SSDLELEFKQNENVFQRAEKLRQRLK-NVKRVLVILDNIWKLLN---------LDAVGIPFGDVKKERNDDRSRCTVLLT 298 (1355)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~~l~~~l~-~~k~~LlvlDdv~~~~~---------~~~~~~~~~~~~~~~~~~~~~s~ilvT 298 (1355)
.. ... . ......+..+.+.+. .+++.+|++|++..... ...+..|.- ....-++|-+
T Consensus 247 -ag--~~~-~-g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l--------~~g~l~~Iga 313 (857)
T PRK10865 247 -AG--AKY-R-GEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL--------ARGELHCVGA 313 (857)
T ss_pred -hc--cch-h-hhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchh--------hcCCCeEEEc
Confidence 00 000 0 112223333444332 24789999999976521 111111211 2223455555
Q ss_pred eCchhhh------hhcCCCcceEecCCCCHHHHHHHHHHHh
Q 000679 299 SRNRDVL------CNDMNSQKFFLIEVLSYEEAWCLFEKIV 333 (1355)
Q Consensus 299 tR~~~v~------~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 333 (1355)
|...+.. .........+.+...+.++..++++...
T Consensus 314 Tt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 314 TTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 5444321 1012223456677778899998887654
No 172
>PRK06620 hypothetical protein; Validated
Probab=97.11 E-value=0.0013 Score=69.31 Aligned_cols=136 Identities=19% Similarity=0.060 Sum_probs=78.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCC
Q 000679 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVK 257 (1355)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 257 (1355)
+.+.|+|++|+|||+|++.+++.... .++. ..+. .. +.+. .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~--~~~~--------------------~~--------~~~~--~ 85 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-------YIIK--DIFF--------------------NE--------EILE--K 85 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-------EEcc--hhhh--------------------ch--------hHHh--c
Confidence 56899999999999999987765421 1211 0000 00 1112 3
Q ss_pred eEEEEEeCccccccccccCCCCCCccccCCCCCCCcEEEEEeCchhhh------hhcCCCcceEecCCCCHHHHHHHHHH
Q 000679 258 RVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVL------CNDMNSQKFFLIEVLSYEEAWCLFEK 331 (1355)
Q Consensus 258 ~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~------~~~~~~~~~~~l~~L~~~~~~~lf~~ 331 (1355)
.-++++||++...+ ..+ ..+++.. ...|..||+|++..... ...+...-++++++++.++-..++++
T Consensus 86 ~d~lliDdi~~~~~-~~l----f~l~N~~--~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k 158 (214)
T PRK06620 86 YNAFIIEDIENWQE-PAL----LHIFNII--NEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFK 158 (214)
T ss_pred CCEEEEeccccchH-HHH----HHHHHHH--HhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHH
Confidence 35788899973211 011 1100000 24566899998755321 11233445899999999998888888
Q ss_pred HhCCCCCCcchHHHHHHHHHHhCCChHHH
Q 000679 332 IVGDSAKASDFRVIADEIVRRCGGLPVAI 360 (1355)
Q Consensus 332 ~~~~~~~~~~~~~~~~~i~~~c~glPLai 360 (1355)
.+.... -.--+++.+-|++++.|---.+
T Consensus 159 ~~~~~~-l~l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 159 HFSISS-VTISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred HHHHcC-CCCCHHHHHHHHHHccCCHHHH
Confidence 774311 1122566777888777655443
No 173
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.11 E-value=0.016 Score=60.62 Aligned_cols=52 Identities=17% Similarity=0.310 Sum_probs=39.8
Q ss_pred CCccccchhHHHHHHHHHH----hhcCCceEEEEEecCCCcHHHHHHHHHHHHhhh
Q 000679 153 TAYEQFDSRMKIFQNIMEV----LKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIED 204 (1355)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~----L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 204 (1355)
.....++|-+..++.|++- +......-+-+||..|+|||++++++.+....+
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 4445678888888777653 334455678889999999999999999987643
No 174
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.08 E-value=0.0016 Score=79.16 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=41.6
Q ss_pred cCCccccchhHHHHHHHHHHhhc-----CCceEEEEEecCCCcHHHHHHHHHHHHh
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLKD-----TNVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1355)
|....+++|.++.++++..|+.. ...+++.++|++|+||||+++.++....
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45556788999889999999873 2345799999999999999999998753
No 175
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.08 E-value=0.00054 Score=85.45 Aligned_cols=157 Identities=16% Similarity=0.242 Sum_probs=91.2
Q ss_pred cccchhHHHHHHHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHHhhhc-C---CCEEEEEEeCCCCCHHHHHHHHHHh
Q 000679 156 EQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDK-L---FDKVVFVEVTQTPDLQTIQNKLSSD 231 (1355)
Q Consensus 156 ~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~---F~~~~wv~~s~~~~~~~~~~~i~~~ 231 (1355)
..++||++++.++++.|......-+.++|++|+|||++|+.+++...... . .++.+|.. +...+ +.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la- 255 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA- 255 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc-
Confidence 35789999999999988865445667899999999999999998753221 1 24455421 11111 10
Q ss_pred hccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCccccc--------ccc--ccCCCCCCccccCCCCCCCcEEEEEeCc
Q 000679 232 LELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL--------NLD--AVGIPFGDVKKERNDDRSRCTVLLTSRN 301 (1355)
Q Consensus 232 l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--------~~~--~~~~~~~~~~~~~~~~~~~s~ilvTtR~ 301 (1355)
+.... .........+.+.+.+.++.+|++|++.... +.+ .+..++ + ....-+||-+|..
T Consensus 256 -G~~~~--Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~-------L-~~g~i~vIgATt~ 324 (758)
T PRK11034 256 -GTKYR--GDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPL-------L-SSGKIRVIGSTTY 324 (758)
T ss_pred -ccchh--hhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHH-------H-hCCCeEEEecCCh
Confidence 00000 1223344455555554467899999997541 111 111111 1 2223445555544
Q ss_pred hhhh------hhcCCCcceEecCCCCHHHHHHHHHHHh
Q 000679 302 RDVL------CNDMNSQKFFLIEVLSYEEAWCLFEKIV 333 (1355)
Q Consensus 302 ~~v~------~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 333 (1355)
.+.. .........+.++..+.++..++++...
T Consensus 325 ~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 3321 0011234589999999999999998654
No 176
>PRK08181 transposase; Validated
Probab=97.05 E-value=0.0096 Score=64.82 Aligned_cols=79 Identities=25% Similarity=0.316 Sum_probs=48.5
Q ss_pred HHhhcCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHH
Q 000679 170 EVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKL 249 (1355)
Q Consensus 170 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l 249 (1355)
+|+.. ..-+.++|++|+|||.||..+++....+ ...++|++ ..++...+..... . .. ....
T Consensus 101 ~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~------~~~L~~~l~~a~~----~-~~----~~~~ 161 (269)
T PRK08181 101 SWLAK--GANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTR------TTDLVQKLQVARR----E-LQ----LESA 161 (269)
T ss_pred HHHhc--CceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeee------HHHHHHHHHHHHh----C-Cc----HHHH
Confidence 46543 3468999999999999999999876432 23455654 3455555543211 1 11 1123
Q ss_pred HHHHhcCCeEEEEEeCcccc
Q 000679 250 RQRLKNVKRVLVILDNIWKL 269 (1355)
Q Consensus 250 ~~~l~~~k~~LlvlDdv~~~ 269 (1355)
.+.+. +--|||+||+...
T Consensus 162 l~~l~--~~dLLIIDDlg~~ 179 (269)
T PRK08181 162 IAKLD--KFDLLILDDLAYV 179 (269)
T ss_pred HHHHh--cCCEEEEeccccc
Confidence 33443 4559999999644
No 177
>PRK10536 hypothetical protein; Provisional
Probab=97.04 E-value=0.008 Score=63.63 Aligned_cols=57 Identities=18% Similarity=0.235 Sum_probs=43.1
Q ss_pred CccccchhHHHHHHHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEE
Q 000679 154 AYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVF 212 (1355)
Q Consensus 154 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w 212 (1355)
+..++.+|......++.++.+. .+|.+.|++|+|||+||.+++.+.-..+.|+.++-
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred CCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 4455678888888888888664 49999999999999999999986432344655443
No 178
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.04 E-value=0.0053 Score=68.77 Aligned_cols=104 Identities=15% Similarity=0.218 Sum_probs=68.4
Q ss_pred HHHHHHHhhc-CCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCE-EEEEEeCCCC-CHHHHHHHHHHhhccccccCCC
Q 000679 165 FQNIMEVLKD-TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDK-VVFVEVTQTP-DLQTIQNKLSSDLELEFKQNEN 241 (1355)
Q Consensus 165 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~ 241 (1355)
..++++.+.. .....+.|+|..|+|||||++.+++..... +-+. ++|+.+.+.. ++.++.+.+...+.....+...
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 3456777652 233567999999999999999999877533 3344 4777787655 5788999988877654322111
Q ss_pred H-----HHHHHHHHHHH-hcCCeEEEEEeCcccc
Q 000679 242 V-----FQRAEKLRQRL-KNVKRVLVILDNIWKL 269 (1355)
Q Consensus 242 ~-----~~~~~~l~~~l-~~~k~~LlvlDdv~~~ 269 (1355)
. ......+.+++ .++++++||+|++...
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 1 11222333333 3479999999998654
No 179
>PRK08118 topology modulation protein; Reviewed
Probab=97.03 E-value=0.00035 Score=70.60 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=29.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhh-cCCCEEEE
Q 000679 178 GMIGVYGVNGVGKTTLVKQIAMQVIED-KLFDKVVF 212 (1355)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 212 (1355)
..|.|+|++|+||||+|+.+++..... -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 368999999999999999999987543 45777776
No 180
>CHL00176 ftsH cell division protein; Validated
Probab=97.01 E-value=0.0072 Score=74.22 Aligned_cols=173 Identities=16% Similarity=0.163 Sum_probs=93.5
Q ss_pred cccchhHHHHHHH---HHHhhcC---------CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHH
Q 000679 156 EQFDSRMKIFQNI---MEVLKDT---------NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQT 223 (1355)
Q Consensus 156 ~~~~gr~~~~~~l---~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 223 (1355)
.++.|.++.++++ ++++... ..+-|.++|++|+|||++|+.++..... . |+.++. .+
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~--p-----~i~is~----s~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV--P-----FFSISG----SE 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC--C-----eeeccH----HH
Confidence 3455665555544 4444321 2356899999999999999999987532 1 233321 11
Q ss_pred HHHHHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCccccc------------c----ccccCCCCCCccccCC
Q 000679 224 IQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL------------N----LDAVGIPFGDVKKERN 287 (1355)
Q Consensus 224 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~------------~----~~~~~~~~~~~~~~~~ 287 (1355)
+..... + .....+..+.+......+++|++||++... . +..+...+.. .
T Consensus 252 f~~~~~---g-------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg-----~ 316 (638)
T CHL00176 252 FVEMFV---G-------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDG-----F 316 (638)
T ss_pred HHHHhh---h-------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcc-----c
Confidence 111000 0 011123333333344578999999996541 0 1111111100 0
Q ss_pred CCCCCcEEEEEeCchhhhhh-cC---CCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCC
Q 000679 288 DDRSRCTVLLTSRNRDVLCN-DM---NSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGL 356 (1355)
Q Consensus 288 ~~~~~s~ilvTtR~~~v~~~-~~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~gl 356 (1355)
....+..||.||...+.... .. .....+.++..+.++-.++++.++......+ ......+++.+.|.
T Consensus 317 ~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~--d~~l~~lA~~t~G~ 387 (638)
T CHL00176 317 KGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP--DVSLELIARRTPGF 387 (638)
T ss_pred cCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch--hHHHHHHHhcCCCC
Confidence 13345567777766433211 11 1235788999999999999998885422222 23356778887773
No 181
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.99 E-value=0.00015 Score=66.49 Aligned_cols=99 Identities=21% Similarity=0.276 Sum_probs=48.6
Q ss_pred ceEEEecCCCccccC---cccccccCCcEEEecCCCCCC-ccccc-cccccceeecccCCCCccchhhhccccCcEEecc
Q 000679 562 LRVVHFTRTCFLSLP---SSLVCLISLRTLSLEGCQVGD-VAIVG-QLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLR 636 (1355)
Q Consensus 562 Lr~L~L~~~~~~~lp---~~i~~L~~Lr~L~L~~~~i~~-p~~i~-~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~ 636 (1355)
+..+||+.|.+-.++ ..+.+.++|...+|++|.+.. |+.+. +...+.+|++.+|.+..+|.++..++.|+.|+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 334455555443322 223344455555555555554 43333 2335555555555555555555555555555555
Q ss_pred CcchhhccchhHHhhhccccccccCC
Q 000679 637 NCRRLQAIAPNVISKLSRLEELYMGD 662 (1355)
Q Consensus 637 ~~~~l~~~p~~~i~~L~~L~~L~l~~ 662 (1355)
. +.+...|.- |..|.+|-.|+.-+
T Consensus 109 ~-N~l~~~p~v-i~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 109 F-NPLNAEPRV-IAPLIKLDMLDSPE 132 (177)
T ss_pred c-CccccchHH-HHHHHhHHHhcCCC
Confidence 5 334444443 44455555555433
No 182
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.98 E-value=0.017 Score=64.48 Aligned_cols=181 Identities=15% Similarity=0.155 Sum_probs=98.0
Q ss_pred HHHHHHHHHhhcCCc-eEEEEEecCCCcHHHHHHHHHHHHhhhcCCCE-----EEEEEeCCCCCHHHHHHHHHHhhcccc
Q 000679 163 KIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDK-----VVFVEVTQTPDLQTIQNKLSSDLELEF 236 (1355)
Q Consensus 163 ~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-----~~wv~~s~~~~~~~~~~~i~~~l~~~~ 236 (1355)
...+.+...+..+.. ..+.++|+.|+||+++|..+++..-......+ +-|+..+..+|+..+. ...+.
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~------~~p~~ 84 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVS------FIPNR 84 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEe------cCCCc
Confidence 345666666665554 46889999999999999999887643211100 0011111111110000 00000
Q ss_pred cc----CCCHHHHHHHHHHHHhc----CCeEEEEEeCccccc--cccccCCCCCCccccCCCCCCCcEEEEEeCch-hhh
Q 000679 237 KQ----NENVFQRAEKLRQRLKN----VKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSRNR-DVL 305 (1355)
Q Consensus 237 ~~----~~~~~~~~~~l~~~l~~----~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~-~v~ 305 (1355)
.. .....+.++.+.+.+.. +++-++|+|+++... .-+.+...+-. -..++.+|++|.+. .+.
T Consensus 85 ~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE-------Pp~~~~fiL~~~~~~~lL 157 (319)
T PRK08769 85 TGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEE-------PSPGRYLWLISAQPARLP 157 (319)
T ss_pred ccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhC-------CCCCCeEEEEECChhhCc
Confidence 00 01123334444444432 466689999998763 23333322222 33466666666654 333
Q ss_pred hhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 000679 306 CNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 363 (1355)
Q Consensus 306 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 363 (1355)
.........+.+.+++.+++.+.+.+. + .. +..+..++..++|.|+.+...
T Consensus 158 pTIrSRCq~i~~~~~~~~~~~~~L~~~-~--~~----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 158 ATIRSRCQRLEFKLPPAHEALAWLLAQ-G--VS----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred hHHHhhheEeeCCCcCHHHHHHHHHHc-C--CC----hHHHHHHHHHcCCCHHHHHHH
Confidence 212333567889999999998888653 1 11 222667899999999866543
No 183
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.93 E-value=0.051 Score=61.82 Aligned_cols=88 Identities=18% Similarity=0.186 Sum_probs=53.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCC-CCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhc
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQ-TPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKN 255 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 255 (1355)
..+++++|+.|+||||++.+++.....+.....+..++... .....+-++..++.++.+.....+..+... ....+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~-~l~~l~- 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQL-ALAELR- 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHH-HHHHhc-
Confidence 46999999999999999999998864332224566665432 223455566666666665443233333322 233344
Q ss_pred CCeEEEEEeCcc
Q 000679 256 VKRVLVILDNIW 267 (1355)
Q Consensus 256 ~k~~LlvlDdv~ 267 (1355)
++-++++|..-
T Consensus 215 -~~DlVLIDTaG 225 (374)
T PRK14722 215 -NKHMVLIDTIG 225 (374)
T ss_pred -CCCEEEEcCCC
Confidence 34566688874
No 184
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.93 E-value=0.002 Score=64.76 Aligned_cols=103 Identities=17% Similarity=0.273 Sum_probs=68.7
Q ss_pred cCCccccchhHHHHHHHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHh
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSD 231 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 231 (1355)
|....++||-++.++++--...+++.+-+.|.||+|+||||-+..+++..--...-+.+.-.++|+...++-+...|-.
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~- 101 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKM- 101 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHH-
Confidence 4455678899998888776666888899999999999999999999988753333356666666665554444333311
Q ss_pred hccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCcccc
Q 000679 232 LELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL 269 (1355)
Q Consensus 232 l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 269 (1355)
+. +-+-.+-.++.-.+|||.+++.
T Consensus 102 FA--------------Q~kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 102 FA--------------QKKVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred HH--------------HhhccCCCCceeEEEeeccchh
Confidence 00 0000111246668899998876
No 185
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.91 E-value=0.0023 Score=63.37 Aligned_cols=91 Identities=22% Similarity=0.161 Sum_probs=52.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCC
Q 000679 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVK 257 (1355)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 257 (1355)
..+.|+|++|+||||+|+.++....... ..++++..+........... ...................+.+.....+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 5789999999999999999998874321 24566655544332222211 1111111111233344445555555423
Q ss_pred eEEEEEeCccccccc
Q 000679 258 RVLVILDNIWKLLNL 272 (1355)
Q Consensus 258 ~~LlvlDdv~~~~~~ 272 (1355)
..+|++|+++.....
T Consensus 79 ~~viiiDei~~~~~~ 93 (148)
T smart00382 79 PDVLILDEITSLLDA 93 (148)
T ss_pred CCEEEEECCcccCCH
Confidence 489999999877443
No 186
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.90 E-value=0.059 Score=69.13 Aligned_cols=46 Identities=30% Similarity=0.350 Sum_probs=37.6
Q ss_pred ccchhHHHHHHHHHHhh------cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 000679 157 QFDSRMKIFQNIMEVLK------DTNVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1355)
Q Consensus 157 ~~~gr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1355)
.++|.++.++++.+++. ....+++.++|++|+|||++|+.+++...
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 36688888999888764 12345899999999999999999999874
No 187
>PRK08116 hypothetical protein; Validated
Probab=96.88 E-value=0.0018 Score=70.97 Aligned_cols=105 Identities=25% Similarity=0.284 Sum_probs=60.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCC
Q 000679 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVK 257 (1355)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 257 (1355)
..+.++|..|+|||.||.++++....+ -..+++++ ..+++..+......... .+ ...+.+.+.+ -
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~~--~~----~~~~~~~l~~-~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSGK--ED----ENEIIRSLVN-A 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhcccc--cc----HHHHHHHhcC-C
Confidence 458899999999999999999998643 34566665 34455555544332111 11 2233444543 2
Q ss_pred eEEEEEeCccc--cccccccCCCCCCccccCCCCCCCcEEEEEeCch
Q 000679 258 RVLVILDNIWK--LLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNR 302 (1355)
Q Consensus 258 ~~LlvlDdv~~--~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~ 302 (1355)
=||||||+.. ..+|..- .+-.+++.+ ...+..+||||...
T Consensus 180 -dlLviDDlg~e~~t~~~~~--~l~~iin~r--~~~~~~~IiTsN~~ 221 (268)
T PRK08116 180 -DLLILDDLGAERDTEWARE--KVYNIIDSR--YRKGLPTIVTTNLS 221 (268)
T ss_pred -CEEEEecccCCCCCHHHHH--HHHHHHHHH--HHCCCCEEEECCCC
Confidence 3899999943 3444321 011112221 23455688888754
No 188
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.86 E-value=0.019 Score=64.87 Aligned_cols=203 Identities=16% Similarity=0.178 Sum_probs=128.1
Q ss_pred hHHHHHHHHHHhhcCCceEEEEEecCCCcHHHHH-HHHHHHHhhhcCCCEEEEEEeCCC---CCHHHHHHHHHHhhcccc
Q 000679 161 RMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLV-KQIAMQVIEDKLFDKVVFVEVTQT---PDLQTIQNKLSSDLELEF 236 (1355)
Q Consensus 161 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~~wv~~s~~---~~~~~~~~~i~~~l~~~~ 236 (1355)
|.+.+++|..||.+....+|.|.||-|.||+.|+ .++..+.+ .++.+++.+- .+-..+.+.++.++|.-.
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 5677899999999888899999999999999999 77776632 2666665432 234455556665554210
Q ss_pred -----------------------cc-CCCHHHHHHHHHHH----Hhc-------------------------CCeEEEEE
Q 000679 237 -----------------------KQ-NENVFQRAEKLRQR----LKN-------------------------VKRVLVIL 263 (1355)
Q Consensus 237 -----------------------~~-~~~~~~~~~~l~~~----l~~-------------------------~k~~Llvl 263 (1355)
.+ .++.+..+..+.+. |++ .+|=+||+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 00 12233222222111 110 13568999
Q ss_pred eCcccc-----------ccccccCCCCCCccccCCCCCCCcEEEEEeCchhhhhh---cC--CCcceEecCCCCHHHHHH
Q 000679 264 DNIWKL-----------LNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCN---DM--NSQKFFLIEVLSYEEAWC 327 (1355)
Q Consensus 264 Ddv~~~-----------~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~---~~--~~~~~~~l~~L~~~~~~~ 327 (1355)
|+.-.. .+|..... .++-.+||++|-+...... .+ ...+.+.|...+.+.|.+
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~Lv-----------~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~ 223 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAASLV-----------QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQ 223 (431)
T ss_pred cchhccCcccchHHHHHHHHHHHHH-----------hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHH
Confidence 997544 23443211 4556689999987644311 22 335688999999999999
Q ss_pred HHHHHhCCCCCC-------------------cchHHHHHHHHHHhCCChHHHHHHHHHHhcC-Ch-HHHHHHHH
Q 000679 328 LFEKIVGDSAKA-------------------SDFRVIADEIVRRCGGLPVAIKTIANALKNK-RL-YVWNDSLE 380 (1355)
Q Consensus 328 lf~~~~~~~~~~-------------------~~~~~~~~~i~~~c~glPLai~~~~~~l~~~-~~-~~w~~~l~ 380 (1355)
+...+....... .....-....++.+||=-.-+..+++.++.. ++ +...++.+
T Consensus 224 yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 224 YVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred HHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 999888432110 1233345678899999999999999999876 43 33444443
No 189
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.84 E-value=0.016 Score=65.96 Aligned_cols=146 Identities=11% Similarity=0.103 Sum_probs=84.8
Q ss_pred cch-hHHHHHHHHHHhhcCCc-eEEEEEecCCCcHHHHHHHHHHHHhhhc--------------------CCCEEEEEEe
Q 000679 158 FDS-RMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDK--------------------LFDKVVFVEV 215 (1355)
Q Consensus 158 ~~g-r~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~~ 215 (1355)
++| -+..++.+...+..++. ....++|+.|+||||+|..+++..--.. |.|..+....
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~ 86 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPD 86 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccc
Confidence 345 66677777777765554 5668999999999999999988753221 2222111111
Q ss_pred CCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHh----cCCeEEEEEeCccccc--cccccCCCCCCccccCCCC
Q 000679 216 TQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDD 289 (1355)
Q Consensus 216 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~ 289 (1355)
+... ..+.+..+.+.+. .+++=++|+|+++... ..+.+...+-. -
T Consensus 87 ~~~i----------------------~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEE-------P 137 (329)
T PRK08058 87 GQSI----------------------KKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEE-------P 137 (329)
T ss_pred cccC----------------------CHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcC-------C
Confidence 1111 1222333333332 1355578999987652 23334333333 3
Q ss_pred CCCcEEEEEeCchh-hhhhcCCCcceEecCCCCHHHHHHHHHHH
Q 000679 290 RSRCTVLLTSRNRD-VLCNDMNSQKFFLIEVLSYEEAWCLFEKI 332 (1355)
Q Consensus 290 ~~~s~ilvTtR~~~-v~~~~~~~~~~~~l~~L~~~~~~~lf~~~ 332 (1355)
..++.+|++|.+.. +..........+++.+++.++..+.+.+.
T Consensus 138 p~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 138 SGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred CCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 45666776766543 32212334568999999999998888653
No 190
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.84 E-value=0.034 Score=65.14 Aligned_cols=88 Identities=20% Similarity=0.286 Sum_probs=48.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCC-CCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhc
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQT-PDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKN 255 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 255 (1355)
..+|+|+|++|+||||++..++.....+.....+..++.... ....+.+......++.......+..+.. ...+.+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~-~aL~~l~- 427 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLL-DLLERLR- 427 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHH-HHHHHhc-
Confidence 479999999999999999999887643322344555554321 1122333333344443333322223322 3333343
Q ss_pred CCeEEEEEeCcc
Q 000679 256 VKRVLVILDNIW 267 (1355)
Q Consensus 256 ~k~~LlvlDdv~ 267 (1355)
+.-+|++|..-
T Consensus 428 -~~DLVLIDTaG 438 (559)
T PRK12727 428 -DYKLVLIDTAG 438 (559)
T ss_pred -cCCEEEecCCC
Confidence 44578888764
No 191
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.15 Score=60.87 Aligned_cols=161 Identities=20% Similarity=0.225 Sum_probs=89.7
Q ss_pred cchhHHHHHHHHHHhh------cCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHh
Q 000679 158 FDSRMKIFQNIMEVLK------DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSD 231 (1355)
Q Consensus 158 ~~gr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 231 (1355)
-.|-++.+++|+++|. +-+.+++++||++|+|||.|++.++.-.. +.| +-++++.-.|..+|...=-.-
T Consensus 325 HYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~--Rkf---vR~sLGGvrDEAEIRGHRRTY 399 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG--RKF---VRISLGGVRDEAEIRGHRRTY 399 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC--CCE---EEEecCccccHHHhccccccc
Confidence 3589999999999986 23457999999999999999999999874 334 234555555554442110000
Q ss_pred hccccccCCCHHHHHHHHHHHHhc--CCeEEEEEeCccccc-ccc--------ccCCCCC--CccccCCCCC-CCcEEE-
Q 000679 232 LELEFKQNENVFQRAEKLRQRLKN--VKRVLVILDNIWKLL-NLD--------AVGIPFG--DVKKERNDDR-SRCTVL- 296 (1355)
Q Consensus 232 l~~~~~~~~~~~~~~~~l~~~l~~--~k~~LlvlDdv~~~~-~~~--------~~~~~~~--~~~~~~~~~~-~~s~il- 296 (1355)
+| ..-.++.+.++. .++=+++||.++... ++. ++..|=. .|.++.+... -=|+|+
T Consensus 400 IG----------amPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 400 IG----------AMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred cc----------cCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEE
Confidence 00 011122233321 266789999997652 111 1111100 0000111000 123443
Q ss_pred EEeCch-h-hhhhcCCCcceEecCCCCHHHHHHHHHHHh
Q 000679 297 LTSRNR-D-VLCNDMNSQKFFLIEVLSYEEAWCLFEKIV 333 (1355)
Q Consensus 297 vTtR~~-~-v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 333 (1355)
|||-+. + +....++.-.++++.+-+++|-.++-+++.
T Consensus 470 iaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 470 IATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 334332 2 222234556799999999999888877765
No 192
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.83 E-value=0.056 Score=60.32 Aligned_cols=176 Identities=14% Similarity=0.168 Sum_probs=95.5
Q ss_pred HHHHHHHHhhcCC-ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCE-------EEEEEeCCCCCHHHHHHHHHHhhccc
Q 000679 164 IFQNIMEVLKDTN-VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDK-------VVFVEVTQTPDLQTIQNKLSSDLELE 235 (1355)
Q Consensus 164 ~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-------~~wv~~s~~~~~~~~~~~i~~~l~~~ 235 (1355)
..+++...+..++ ...+-+.|+.|+||+++|..++...--.+.-+. +-++..+..+|+..+ ...
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~p~ 82 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVI--------KPE 82 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------ecC
Confidence 3455666665444 357889999999999999999886532111000 000000111111000 000
Q ss_pred cccCCCHHHHHHHHHHHHh----cCCeEEEEEeCcccc--ccccccCCCCCCccccCCCCCCCcEEEEEeCch-hhhhhc
Q 000679 236 FKQNENVFQRAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNR-DVLCND 308 (1355)
Q Consensus 236 ~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~-~v~~~~ 308 (1355)
.....-..+.++.+.+.+. .+++=.+|+|+++.. ...+.+...+-. -..++.+|++|.+. .+....
T Consensus 83 ~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE-------Pp~~t~fiL~t~~~~~lLpTI 155 (319)
T PRK06090 83 KEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEE-------PAPNCLFLLVTHNQKRLLPTI 155 (319)
T ss_pred cCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcC-------CCCCeEEEEEECChhhChHHH
Confidence 0000111223333433432 235568889999876 344444333333 34456666665554 444323
Q ss_pred CCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 000679 309 MNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 363 (1355)
Q Consensus 309 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 363 (1355)
......+.+.+++.+++.+.+.+.. . . .+..+++.++|.|+.+.-+
T Consensus 156 ~SRCq~~~~~~~~~~~~~~~L~~~~-~--~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 156 VSRCQQWVVTPPSTAQAMQWLKGQG-I--T------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred HhcceeEeCCCCCHHHHHHHHHHcC-C--c------hHHHHHHHcCCCHHHHHHH
Confidence 3345688999999999998886532 1 1 1356789999999976544
No 193
>PHA00729 NTP-binding motif containing protein
Probab=96.82 E-value=0.0054 Score=63.84 Aligned_cols=35 Identities=26% Similarity=0.417 Sum_probs=28.4
Q ss_pred HHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHH
Q 000679 167 NIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 167 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
++++.+...+...|.|.|.+|+||||||..+++..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34455555566789999999999999999999875
No 194
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.80 E-value=0.00032 Score=64.42 Aligned_cols=73 Identities=18% Similarity=0.289 Sum_probs=41.2
Q ss_pred ccChhhhcCCCcceEEEecCCCccccCcccccccCCcEEEecCCCCCC-ccccccccccceeecccCCCCccch
Q 000679 550 KIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGD-VAIVGQLKKLEILSFRNSDIQQLPR 622 (1355)
Q Consensus 550 ~lp~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~-p~~i~~L~~L~~L~L~~~~l~~lP~ 622 (1355)
+.|+.+-.+++.+..|+|++|.+..+|..+..++.||.|+++.|++.. |..|..|.+|-+||..++.+..+|.
T Consensus 67 ~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 67 KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDV 140 (177)
T ss_pred hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcH
Confidence 444444445555556666666666666555555566666666555554 5555555555555555555555554
No 195
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=0.00028 Score=73.40 Aligned_cols=98 Identities=22% Similarity=0.329 Sum_probs=55.3
Q ss_pred ceEEEecCCCccccCc--cc-ccccCCcEEEecCCCCCCccc----cccccccceeecccCCC----CccchhhhccccC
Q 000679 562 LRVVHFTRTCFLSLPS--SL-VCLISLRTLSLEGCQVGDVAI----VGQLKKLEILSFRNSDI----QQLPREIGQLVQL 630 (1355)
Q Consensus 562 Lr~L~L~~~~~~~lp~--~i-~~L~~Lr~L~L~~~~i~~p~~----i~~L~~L~~L~L~~~~l----~~lP~~i~~L~~L 630 (1355)
+.+|.+.++.|...-+ .| ....+++.|+|.+|.|++.+. +.+|++|++|+|+.|.+ ..+| -.+.+|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl 123 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNL 123 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccce
Confidence 3355555665544221 12 244577777777777776322 23677777787777743 3444 245677
Q ss_pred cEEeccCcchhhc-cchhHHhhhccccccccCCC
Q 000679 631 RLLDLRNCRRLQA-IAPNVISKLSRLEELYMGDS 663 (1355)
Q Consensus 631 ~~L~l~~~~~l~~-~p~~~i~~L~~L~~L~l~~~ 663 (1355)
+.|-|.|.. +.- -....+..++.+++|+++.|
T Consensus 124 ~~lVLNgT~-L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 124 RVLVLNGTG-LSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEEEEcCCC-CChhhhhhhhhcchhhhhhhhccc
Confidence 777776632 211 11122556666777777665
No 196
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.75 E-value=0.0041 Score=64.03 Aligned_cols=50 Identities=24% Similarity=0.406 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEE
Q 000679 163 KIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVE 214 (1355)
Q Consensus 163 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 214 (1355)
.+-...++.|. ...++.+.|++|.|||.||.+.+-+.-..+.|+.++++.
T Consensus 7 ~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 7 EEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp HHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred HHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 33445556665 446999999999999999999998776668899988874
No 197
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.73 E-value=0.04 Score=61.71 Aligned_cols=175 Identities=12% Similarity=0.134 Sum_probs=97.3
Q ss_pred HHHHHHHHhhcCC-ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCC------E--EEEEEeCCCCCHHHHHHHHHHhhcc
Q 000679 164 IFQNIMEVLKDTN-VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFD------K--VVFVEVTQTPDLQTIQNKLSSDLEL 234 (1355)
Q Consensus 164 ~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~------~--~~wv~~s~~~~~~~~~~~i~~~l~~ 234 (1355)
..+.+.+.+..+. ...+-+.|+.|+||+++|..++...--..... | +-++..+..+|+..+. .
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~--------p 81 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILE--------P 81 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEc--------c
Confidence 3455666666544 35777999999999999999998764221110 0 0011111111111000 0
Q ss_pred ccccCCCHHHHHHHHHHHHh----cCCeEEEEEeCccccc--cccccCCCCCCccccCCCCCCCcEEEEEeCch-hhhhh
Q 000679 235 EFKQNENVFQRAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSRNR-DVLCN 307 (1355)
Q Consensus 235 ~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~-~v~~~ 307 (1355)
. ....-..+.++.+.+.+. .+++=.+|+|+++... ..+.+...+-+ -..++.+|++|.+. .+...
T Consensus 82 ~-~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEE-------Pp~~~~fiL~t~~~~~llpT 153 (325)
T PRK06871 82 I-DNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEE-------PRPNTYFLLQADLSAALLPT 153 (325)
T ss_pred c-cCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcC-------CCCCeEEEEEECChHhCchH
Confidence 0 000112333444444443 2466688899998763 34444333333 34556666666654 33321
Q ss_pred cCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHH
Q 000679 308 DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAI 360 (1355)
Q Consensus 308 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 360 (1355)
.......+.+.+++.++..+.+....+.. ...+...+..++|.|+.+
T Consensus 154 I~SRC~~~~~~~~~~~~~~~~L~~~~~~~------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 154 IYSRCQTWLIHPPEEQQALDWLQAQSSAE------ISEILTALRINYGRPLLA 200 (325)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHhccC------hHHHHHHHHHcCCCHHHH
Confidence 23335689999999999998888764221 112556788999999643
No 198
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.66 E-value=0.014 Score=69.30 Aligned_cols=182 Identities=13% Similarity=0.106 Sum_probs=92.2
Q ss_pred cccchhHHHHHHHHHHhh-------c---CCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHH
Q 000679 156 EQFDSRMKIFQNIMEVLK-------D---TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQ 225 (1355)
Q Consensus 156 ~~~~gr~~~~~~l~~~L~-------~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 225 (1355)
.++.|.+..++.+.+... . ...+-|.++|++|+|||.+|+.+++.... .| +-+..+ .+
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~--~~---~~l~~~------~l- 295 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQL--PL---LRLDVG------KL- 295 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC--CE---EEEEhH------Hh-
Confidence 456677666655544221 0 23467899999999999999999998642 12 112211 11
Q ss_pred HHHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCcccccc----cccc---CCCCCCccccCCCCCCCcEEEEE
Q 000679 226 NKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLN----LDAV---GIPFGDVKKERNDDRSRCTVLLT 298 (1355)
Q Consensus 226 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~----~~~~---~~~~~~~~~~~~~~~~~s~ilvT 298 (1355)
..... ......+..+.+......+++|++|+++.... ...- ...+..++........+.-||.|
T Consensus 296 ---~~~~v------Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaT 366 (489)
T CHL00195 296 ---FGGIV------GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVAT 366 (489)
T ss_pred ---ccccc------ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 11100 01122333444433444889999999975311 0000 00000000000012334445667
Q ss_pred eCchhhh-hhc---CCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChH
Q 000679 299 SRNRDVL-CND---MNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPV 358 (1355)
Q Consensus 299 tR~~~v~-~~~---~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL 358 (1355)
|...... ... -.....+.++.-+.++-.++|+.+.........-......+++.+.|.--
T Consensus 367 TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSG 430 (489)
T CHL00195 367 ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSG 430 (489)
T ss_pred cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCH
Confidence 7554321 101 12345788998999999999988874322111001114466666666543
No 199
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.65 E-value=0.013 Score=60.84 Aligned_cols=88 Identities=19% Similarity=0.239 Sum_probs=56.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCC-CCCHHHHHHHHHHhhccccccC---CCHHHHHHHHHHH
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQ-TPDLQTIQNKLSSDLELEFKQN---ENVFQRAEKLRQR 252 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~~ 252 (1355)
+++|.++|+.|+||||.+.+++...+.+ -..+..|+... .....+-++..++.++.+.... .+..+...+..+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 3689999999999999998888887644 34566677643 2345667788888888775432 2344444444444
Q ss_pred HhcCCeEEEEEeCc
Q 000679 253 LKNVKRVLVILDNI 266 (1355)
Q Consensus 253 l~~~k~~LlvlDdv 266 (1355)
+...+.=++++|-.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 44323347777765
No 200
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.63 E-value=0.00055 Score=73.39 Aligned_cols=15 Identities=20% Similarity=0.344 Sum_probs=7.4
Q ss_pred hhhcCCCCCCeEEEE
Q 000679 679 VELKGLSKLTTLEIH 693 (1355)
Q Consensus 679 ~~L~~L~~L~~L~l~ 693 (1355)
..+..+++|+.|++.
T Consensus 207 eal~~~~~LevLdl~ 221 (382)
T KOG1909|consen 207 EALEHCPHLEVLDLR 221 (382)
T ss_pred HHHHhCCcceeeecc
Confidence 344455555555554
No 201
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.62 E-value=0.0084 Score=60.27 Aligned_cols=136 Identities=16% Similarity=0.198 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHHhhcCCc-eEEEEEecCCCcHHHHHHHHHHHHhhhcC------------------CCEEEEEEeCCC--
Q 000679 160 SRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDKL------------------FDKVVFVEVTQT-- 218 (1355)
Q Consensus 160 gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------F~~~~wv~~s~~-- 218 (1355)
|-++..+.+.+.+..+.. ..+.++|+.|+||+++|..+++..--... .....|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 445667777777776554 46799999999999999999887532221 112233332221
Q ss_pred -CCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCcccc--ccccccCCCCCCccccCCCCCCCcEE
Q 000679 219 -PDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTV 295 (1355)
Q Consensus 219 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~s~i 295 (1355)
..++++. .+...+..... .+++=.+|+||++.. +.++++...+-+ ...++++
T Consensus 81 ~i~i~~ir-~i~~~~~~~~~-----------------~~~~KviiI~~ad~l~~~a~NaLLK~LEe-------pp~~~~f 135 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSPS-----------------EGKYKVIIIDEADKLTEEAQNALLKTLEE-------PPENTYF 135 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-T-----------------TSSSEEEEEETGGGS-HHHHHHHHHHHHS-------TTTTEEE
T ss_pred hhhHHHHH-HHHHHHHHHHh-----------------cCCceEEEeehHhhhhHHHHHHHHHHhcC-------CCCCEEE
Confidence 2233222 33332222111 136668999999876 445555444433 5567888
Q ss_pred EEEeCchh-hhhhcCCCcceEecCCC
Q 000679 296 LLTSRNRD-VLCNDMNSQKFFLIEVL 320 (1355)
Q Consensus 296 lvTtR~~~-v~~~~~~~~~~~~l~~L 320 (1355)
|++|++.. +..........+.+.++
T Consensus 136 iL~t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 136 ILITNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp EEEES-GGGS-HHHHTTSEEEEE---
T ss_pred EEEECChHHChHHHHhhceEEecCCC
Confidence 88888764 22212223345666554
No 202
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.61 E-value=0.049 Score=69.05 Aligned_cols=164 Identities=17% Similarity=0.151 Sum_probs=86.4
Q ss_pred ccchhHHHHHHHHHHhhc------CCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHH
Q 000679 157 QFDSRMKIFQNIMEVLKD------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSS 230 (1355)
Q Consensus 157 ~~~gr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 230 (1355)
..+|.++.+++|++++.. ....++.++|++|+||||+|+.++.... ..| +-+..+...+..++...-..
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~--~~~---~~i~~~~~~d~~~i~g~~~~ 397 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG--RKY---VRMALGGVRDEAEIRGHRRT 397 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC--CCE---EEEEcCCCCCHHHhccchhc
Confidence 467999999999988861 3456899999999999999999998753 223 22334444444333211111
Q ss_pred hhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCcccccc-c-----cccCCCCCC-----ccccCC---CCCCCcEEE
Q 000679 231 DLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLN-L-----DAVGIPFGD-----VKKERN---DDRSRCTVL 296 (1355)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~-~-----~~~~~~~~~-----~~~~~~---~~~~~s~il 296 (1355)
-.+. ........+.+. .. ..-+++||.++.... . +.+...+.. +.+..+ -.-.+.-+|
T Consensus 398 ~~g~------~~G~~~~~l~~~-~~-~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i 469 (784)
T PRK10787 398 YIGS------MPGKLIQKMAKV-GV-KNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFV 469 (784)
T ss_pred cCCC------CCcHHHHHHHhc-CC-CCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEE
Confidence 1110 011111122211 11 344788999875521 1 111111100 000000 011334455
Q ss_pred EEeCchhhhhhcCCCcceEecCCCCHHHHHHHHHHHh
Q 000679 297 LTSRNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIV 333 (1355)
Q Consensus 297 vTtR~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 333 (1355)
.||....+.....+...++.+.+++.+|-.++.+++.
T Consensus 470 ~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 470 ATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 5665544333233344688999999988888777654
No 203
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.61 E-value=0.0072 Score=61.98 Aligned_cols=176 Identities=14% Similarity=0.199 Sum_probs=98.4
Q ss_pred cccchhHHHHHH---HHHHhhcC------CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHH
Q 000679 156 EQFDSRMKIFQN---IMEVLKDT------NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQN 226 (1355)
Q Consensus 156 ~~~~gr~~~~~~---l~~~L~~~------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 226 (1355)
.+++|.++++.+ |++.|.++ ..+-|..+|++|.|||-+|+++++..++- | +.+. ..++
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~-----l~vk----at~l-- 187 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--L-----LLVK----ATEL-- 187 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--e-----EEec----hHHH--
Confidence 457788776643 55666643 46789999999999999999999987532 2 1111 1111
Q ss_pred HHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCccccc---cccccCCCCCCcccc----C--CCCCCCcEEEE
Q 000679 227 KLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL---NLDAVGIPFGDVKKE----R--NDDRSRCTVLL 297 (1355)
Q Consensus 227 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~---~~~~~~~~~~~~~~~----~--~~~~~~s~ilv 297 (1355)
|-+..| +....+.++.++-.+.-++.+.+|.++... .++.+......++++ + .-.+.|...|-
T Consensus 188 -iGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 188 -IGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred -HHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 112221 233445556666555688999999886541 111221111110000 0 01345666666
Q ss_pred EeCchhhhhhc--CCCcceEecCCCCHHHHHHHHHHHhCCCC--CCcchHHHHHHHHHHhCCC
Q 000679 298 TSRNRDVLCND--MNSQKFFLIEVLSYEEAWCLFEKIVGDSA--KASDFRVIADEIVRRCGGL 356 (1355)
Q Consensus 298 TtR~~~v~~~~--~~~~~~~~l~~L~~~~~~~lf~~~~~~~~--~~~~~~~~~~~i~~~c~gl 356 (1355)
.|-+.+....+ .....-++...-+++|-.+++...+..-. .... .+.++++.+|+
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~ 318 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD----LRYLAAKTKGM 318 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC----HHHHHHHhCCC
Confidence 66665543211 22235677777788898888888873311 1122 34566666654
No 204
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.084 Score=60.15 Aligned_cols=152 Identities=18% Similarity=0.310 Sum_probs=91.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhc
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKN 255 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 255 (1355)
....+.+.|++|+|||+||..++..- .|..+--++. +++ ++ -++......+.+.+.+
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S----~FPFvKiiSp------e~m-------iG------~sEsaKc~~i~k~F~D 593 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSS----DFPFVKIISP------EDM-------IG------LSESAKCAHIKKIFED 593 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhc----CCCeEEEeCh------HHc-------cC------ccHHHHHHHHHHHHHH
Confidence 45567889999999999999999864 3654433321 111 01 1222233333333332
Q ss_pred ---CCeEEEEEeCccccccccccCCCCCC--------ccccCCCCCCCcEEEEEeCchhhhhhcCCC----cceEecCCC
Q 000679 256 ---VKRVLVILDNIWKLLNLDAVGIPFGD--------VKKERNDDRSRCTVLLTSRNRDVLCNDMNS----QKFFLIEVL 320 (1355)
Q Consensus 256 ---~k~~LlvlDdv~~~~~~~~~~~~~~~--------~~~~~~~~~~~s~ilvTtR~~~v~~~~~~~----~~~~~l~~L 320 (1355)
..--.||+||+....+|-.++..|.. +++..++.+..--|+-||....|.. .|+- ...|.++.+
T Consensus 594 AYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~-~m~i~~~F~~~i~Vpnl 672 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQ-EMGILDCFSSTIHVPNL 672 (744)
T ss_pred hhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHH-HcCHHHhhhheeecCcc
Confidence 25578999999999999888766554 2333444455555666777777764 3443 357888888
Q ss_pred CH-HHHHHHHHHHhCCCCCCcchHHHHHHHHHHh
Q 000679 321 SY-EEAWCLFEKIVGDSAKASDFRVIADEIVRRC 353 (1355)
Q Consensus 321 ~~-~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c 353 (1355)
+. ++..+.++..- ...+.+.+.++.+.+.+|
T Consensus 673 ~~~~~~~~vl~~~n--~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 673 TTGEQLLEVLEELN--IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred CchHHHHHHHHHcc--CCCcchhHHHHHHHhccc
Confidence 87 66777666532 122334455566666665
No 205
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.036 Score=64.18 Aligned_cols=94 Identities=19% Similarity=0.267 Sum_probs=64.0
Q ss_pred ccccchhHHHHHHHHHHhhc------------CCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHH
Q 000679 155 YEQFDSRMKIFQNIMEVLKD------------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQ 222 (1355)
Q Consensus 155 ~~~~~gr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 222 (1355)
..++-|-++.+.++.+++.. ...+=|.++|++|.|||.||++++++..+- | +.++..
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP--f-----~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP--F-----LSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc--e-----Eeecch----
Confidence 45677888888888887651 234678899999999999999999998643 2 333322
Q ss_pred HHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCcccc
Q 000679 223 TIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL 269 (1355)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 269 (1355)
+|.....++ .++.++++.+.-...-++++++|+++..
T Consensus 258 ----eivSGvSGE------SEkkiRelF~~A~~~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 258 ----EIVSGVSGE------SEKKIRELFDQAKSNAPCIVFIDEIDAI 294 (802)
T ss_pred ----hhhcccCcc------cHHHHHHHHHHHhccCCeEEEeeccccc
Confidence 333333322 2344555555555568999999998754
No 206
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.55 E-value=0.0056 Score=64.54 Aligned_cols=36 Identities=28% Similarity=0.443 Sum_probs=30.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEe
Q 000679 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEV 215 (1355)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 215 (1355)
-.++|+|..|.||||++..+..... ..|+.+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~--~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLR--HKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhc--ccCCEEEEEec
Confidence 4788999999999999999998764 56888887754
No 207
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.47 E-value=0.07 Score=60.25 Aligned_cols=104 Identities=20% Similarity=0.201 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhc----CCeEEEEEeCcccc--ccccccCCCCCCccccCCCCCCCcEEEEEeCc-hhhhhhcCCCcceEe
Q 000679 244 QRAEKLRQRLKN----VKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLTSRN-RDVLCNDMNSQKFFL 316 (1355)
Q Consensus 244 ~~~~~l~~~l~~----~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~-~~v~~~~~~~~~~~~ 316 (1355)
+.++.+.+.+.. +++-++|+|+++.. ..++.+...+-. -..++.+|++|.+ ..+..........+.
T Consensus 115 dqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE-------Pp~~t~fiL~t~~~~~LLpTI~SRcq~i~ 187 (342)
T PRK06964 115 EQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEE-------PPPGTVFLLVSARIDRLLPTILSRCRQFP 187 (342)
T ss_pred HHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcC-------CCcCcEEEEEECChhhCcHHHHhcCEEEE
Confidence 344455555432 35568889999876 345554433333 3455555555554 444432233346899
Q ss_pred cCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 000679 317 IEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 363 (1355)
Q Consensus 317 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 363 (1355)
+.+++.++..+.+... + .. + ...++..++|.|..+..+
T Consensus 188 ~~~~~~~~~~~~L~~~-~--~~--~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 188 MTVPAPEAAAAWLAAQ-G--VA--D----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred ecCCCHHHHHHHHHHc-C--CC--h----HHHHHHHcCCCHHHHHHH
Confidence 9999999999888765 2 11 1 223578889999755433
No 208
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.026 Score=68.60 Aligned_cols=184 Identities=14% Similarity=0.111 Sum_probs=107.8
Q ss_pred ccccchhHHHH---HHHHHHhhcC---------CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHH
Q 000679 155 YEQFDSRMKIF---QNIMEVLKDT---------NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQ 222 (1355)
Q Consensus 155 ~~~~~gr~~~~---~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 222 (1355)
..++.|-++++ ++++++|.++ -++=+-++|++|+|||-||++++-+..+- |+++|..
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGS---- 378 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGS---- 378 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechH----
Confidence 34556665554 5555556532 24668899999999999999999987643 3444432
Q ss_pred HHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCccccccccc---cCC-------CCCCccccCCCCC--
Q 000679 223 TIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNLDA---VGI-------PFGDVKKERNDDR-- 290 (1355)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~---~~~-------~~~~~~~~~~~~~-- 290 (1355)
+..+.+... ...+++.+...-+...++.+.+|+++...--.. ... .+..++....+..
T Consensus 379 ----EFvE~~~g~------~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~ 448 (774)
T KOG0731|consen 379 ----EFVEMFVGV------GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS 448 (774)
T ss_pred ----HHHHHhccc------chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC
Confidence 111111111 134555666666656888999998875522110 000 0000111111122
Q ss_pred CCcEEEEEeCchhhhhh---cCCC-cceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHH
Q 000679 291 SRCTVLLTSRNRDVLCN---DMNS-QKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAI 360 (1355)
Q Consensus 291 ~~s~ilvTtR~~~v~~~---~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 360 (1355)
.+--++-+|...++... ..+. ...+.++.-+...-.++|.-++.......+..++++ |+...-|.+=|.
T Consensus 449 ~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 449 KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHH
Confidence 23334445655544311 1222 457888888899999999999976555566677777 999999988664
No 209
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.36 E-value=0.018 Score=73.40 Aligned_cols=101 Identities=21% Similarity=0.254 Sum_probs=58.8
Q ss_pred cchhHHHHHHHHHHhhc-------C--CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHH
Q 000679 158 FDSRMKIFQNIMEVLKD-------T--NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKL 228 (1355)
Q Consensus 158 ~~gr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 228 (1355)
++|.+..++.+.+.+.. . ...++.++|+.|+|||++|+.++... +...+.++.++..+...+
T Consensus 456 v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~~~---- 526 (731)
T TIGR02639 456 IFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKHTV---- 526 (731)
T ss_pred eeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhcccH----
Confidence 56777788888777651 1 23467899999999999999999876 233455665543222111
Q ss_pred HHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCcccc
Q 000679 229 SSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL 269 (1355)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 269 (1355)
.+-++..... .. .+....+.+.++....-+++||+++..
T Consensus 527 ~~lig~~~gy-vg-~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 527 SRLIGAPPGY-VG-FEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred HHHhcCCCCC-cc-cchhhHHHHHHHhCCCeEEEEechhhc
Confidence 1112211110 00 011223444555435569999999865
No 210
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.35 E-value=0.0054 Score=62.63 Aligned_cols=102 Identities=26% Similarity=0.352 Sum_probs=56.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcC
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNV 256 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (1355)
..-+.++|..|+|||.||..+++....+ .+ .+.|++ ..+++..+-.. ... ... ..+.+.+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~-g~-~v~f~~------~~~L~~~l~~~----~~~-~~~----~~~~~~l~-- 107 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRK-GY-SVLFIT------ASDLLDELKQS----RSD-GSY----EELLKRLK-- 107 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHT-T---EEEEE------HHHHHHHHHCC----HCC-TTH----CHHHHHHH--
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccC-Cc-ceeEee------cCceecccccc----ccc-cch----hhhcCccc--
Confidence 4579999999999999999999987542 23 355664 34455554322 111 111 22344454
Q ss_pred CeEEEEEeCcccc--ccccccCCCCCCccccCCCCCCCcEEEEEeCch
Q 000679 257 KRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNR 302 (1355)
Q Consensus 257 k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~ 302 (1355)
+-=||||||+-.. ..|.. ..+-+++..+. ..+ .+||||...
T Consensus 108 ~~dlLilDDlG~~~~~~~~~--~~l~~ii~~R~--~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 108 RVDLLILDDLGYEPLSEWEA--ELLFEIIDERY--ERK-PTIITSNLS 150 (178)
T ss_dssp TSSCEEEETCTSS---HHHH--HCTHHHHHHHH--HT--EEEEEESS-
T ss_pred cccEecccccceeeeccccc--ccchhhhhHhh--ccc-CeEeeCCCc
Confidence 4458889998654 23322 12223344433 223 578888765
No 211
>PRK07261 topology modulation protein; Provisional
Probab=96.33 E-value=0.012 Score=59.99 Aligned_cols=34 Identities=26% Similarity=0.449 Sum_probs=25.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhhh-cCCCEEEE
Q 000679 179 MIGVYGVNGVGKTTLVKQIAMQVIED-KLFDKVVF 212 (1355)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 212 (1355)
.|.|+|++|+||||||+.+....... -+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 58999999999999999998765321 23455555
No 212
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.31 E-value=0.02 Score=60.88 Aligned_cols=88 Identities=18% Similarity=0.220 Sum_probs=53.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhh-cc---c--cccCCCHH---HHHH
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDL-EL---E--FKQNENVF---QRAE 247 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l-~~---~--~~~~~~~~---~~~~ 247 (1355)
..++.|+|++|+|||++|.+++..... .-..++|++... ++...+.+. ++.. .. . .....+.. ..+.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~--~g~~v~yi~~e~-~~~~rl~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAAR--QGKKVVYIDTEG-LSPERFKQI-AEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEECCC-CCHHHHHHH-HHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 579999999999999999999887642 246889999875 666555443 2221 00 0 00011212 2244
Q ss_pred HHHHHHhcCCeEEEEEeCccc
Q 000679 248 KLRQRLKNVKRVLVILDNIWK 268 (1355)
Q Consensus 248 ~l~~~l~~~k~~LlvlDdv~~ 268 (1355)
.+.+.+.+.+.-++|+|.+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~ 108 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTA 108 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHH
Confidence 444445443556888888743
No 213
>PRK12377 putative replication protein; Provisional
Probab=96.31 E-value=0.022 Score=61.26 Aligned_cols=75 Identities=25% Similarity=0.302 Sum_probs=47.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhc
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKN 255 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 255 (1355)
+...+.++|..|+|||.||.++++....+ ...++++++ .++...+-...... ... ..+.+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~------~~l~~~l~~~~~~~----~~~----~~~l~~l~- 162 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTV------PDVMSRLHESYDNG----QSG----EKFLQELC- 162 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEH------HHHHHHHHHHHhcc----chH----HHHHHHhc-
Confidence 34678999999999999999999988633 334566654 34555444333110 111 12344443
Q ss_pred CCeEEEEEeCccc
Q 000679 256 VKRVLVILDNIWK 268 (1355)
Q Consensus 256 ~k~~LlvlDdv~~ 268 (1355)
+--||||||+..
T Consensus 163 -~~dLLiIDDlg~ 174 (248)
T PRK12377 163 -KVDLLVLDEIGI 174 (248)
T ss_pred -CCCEEEEcCCCC
Confidence 667999999943
No 214
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.035 Score=58.28 Aligned_cols=92 Identities=20% Similarity=0.216 Sum_probs=60.8
Q ss_pred ccchhHHHHHHHHHHhh----------c--CCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHH
Q 000679 157 QFDSRMKIFQNIMEVLK----------D--TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTI 224 (1355)
Q Consensus 157 ~~~gr~~~~~~l~~~L~----------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 224 (1355)
++.|-+.+++.|.+... . ...+-|.++|++|.||+.||++|+.+.. . -|++||.. ++
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--S-----TFFSvSSS----DL 202 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--S-----TFFSVSSS----DL 202 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--C-----ceEEeehH----HH
Confidence 35577777777666543 1 2357889999999999999999998864 1 23455543 22
Q ss_pred HHHHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCcccc
Q 000679 225 QNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL 269 (1355)
Q Consensus 225 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 269 (1355)
. ...-+ ..+.++..+.+.-++.|+-.|.+|.|+..
T Consensus 203 v----SKWmG------ESEkLVknLFemARe~kPSIIFiDEiDsl 237 (439)
T KOG0739|consen 203 V----SKWMG------ESEKLVKNLFEMARENKPSIIFIDEIDSL 237 (439)
T ss_pred H----HHHhc------cHHHHHHHHHHHHHhcCCcEEEeehhhhh
Confidence 2 22111 23456666766666679999999999754
No 215
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.30 E-value=0.089 Score=59.66 Aligned_cols=177 Identities=12% Similarity=0.108 Sum_probs=96.9
Q ss_pred HHHHHHHHhhcCC-ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCC---E-----EEEEEeCCCCCHHHHHHHHHHhhcc
Q 000679 164 IFQNIMEVLKDTN-VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFD---K-----VVFVEVTQTPDLQTIQNKLSSDLEL 234 (1355)
Q Consensus 164 ~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~-----~~wv~~s~~~~~~~~~~~i~~~l~~ 234 (1355)
.-+++...+..++ ...+-+.|+.|+||+++|..++...--...-+ | +-++..+..+|+..+. .
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~--------p 81 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLT--------P 81 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe--------c
Confidence 3456666666544 45778999999999999999988763211100 0 0011111111111100 0
Q ss_pred ccccCCCHHHHHHHHHHHHh----cCCeEEEEEeCccccc--cccccCCCCCCccccCCCCCCCcEEEEEeCch-hhhhh
Q 000679 235 EFKQNENVFQRAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSRNR-DVLCN 307 (1355)
Q Consensus 235 ~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~-~v~~~ 307 (1355)
+.....-..+.++.+.+.+. .+++=.+|+|+++... ..+.+...+-+ -..++.+|.+|.+. .+...
T Consensus 82 ~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE-------Pp~~t~fiL~t~~~~~lLpT 154 (334)
T PRK07993 82 EKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEE-------PPENTWFFLACREPARLLAT 154 (334)
T ss_pred ccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcC-------CCCCeEEEEEECChhhChHH
Confidence 00000112333444444443 2466789999998763 33444333332 34455666666554 44422
Q ss_pred cCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHH
Q 000679 308 DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIK 361 (1355)
Q Consensus 308 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 361 (1355)
.......+.+.+++.+++.+.+.+..+ . + .+.+..++..++|.|..+.
T Consensus 155 IrSRCq~~~~~~~~~~~~~~~L~~~~~--~-~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 155 LRSRCRLHYLAPPPEQYALTWLSREVT--M-S---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred HHhccccccCCCCCHHHHHHHHHHccC--C-C---HHHHHHHHHHcCCCHHHHH
Confidence 233345789999999999888765422 1 1 2236788999999996443
No 216
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.27 E-value=0.0063 Score=60.39 Aligned_cols=83 Identities=18% Similarity=0.284 Sum_probs=59.9
Q ss_pred hcCCCcceEEEecCCCccccCcccccc-cCCcEEEecCCCCCC---ccccccccccceeecccCCCCccch----hhhcc
Q 000679 556 FEGMNELRVVHFTRTCFLSLPSSLVCL-ISLRTLSLEGCQVGD---VAIVGQLKKLEILSFRNSDIQQLPR----EIGQL 627 (1355)
Q Consensus 556 ~~~l~~Lr~L~L~~~~~~~lp~~i~~L-~~Lr~L~L~~~~i~~---p~~i~~L~~L~~L~L~~~~l~~lP~----~i~~L 627 (1355)
|..++.|.+|.+.+|.|..+-..+..+ ++|..|.|.+|.|.. ...+..++.|++|.+-+|.+...+. -+.++
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl 139 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL 139 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEec
Confidence 577788888888888887765555443 458888888887665 4556667788888888887766553 25788
Q ss_pred ccCcEEeccCc
Q 000679 628 VQLRLLDLRNC 638 (1355)
Q Consensus 628 ~~L~~L~l~~~ 638 (1355)
++|++||..+.
T Consensus 140 p~l~~LDF~kV 150 (233)
T KOG1644|consen 140 PSLRTLDFQKV 150 (233)
T ss_pred CcceEeehhhh
Confidence 88888887764
No 217
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.00055 Score=70.62 Aligned_cols=105 Identities=25% Similarity=0.417 Sum_probs=61.8
Q ss_pred ccCCcEEEecCCCCCCccccccccccceeecccCCCCccchhhhccccCcEEeccCcchhhccch-hHHhhhcccccccc
Q 000679 582 LISLRTLSLEGCQVGDVAIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAP-NVISKLSRLEELYM 660 (1355)
Q Consensus 582 L~~Lr~L~L~~~~i~~p~~i~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~-~~i~~L~~L~~L~l 660 (1355)
|.+.+-|+..+|.+.+.....++..|++|.|+-|.|+.|-. +..+++|+.|+|.. +.+..+.+ ..+.+|++|+.|.+
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhh
Confidence 34455566666666665556666777777777777766643 66677777777766 33444432 12556777777777
Q ss_pred CCCccccccccCCCccchhhhcCCCCCCeEE
Q 000679 661 GDSFSQWEKVEGGSNASLVELKGLSKLTTLE 691 (1355)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~ 691 (1355)
..|... ..........-|.-|++|++|+
T Consensus 96 ~ENPCc---~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCC---GEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcc---cccchhHHHHHHHHcccchhcc
Confidence 766542 1111222344566677777765
No 218
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.23 E-value=0.11 Score=60.89 Aligned_cols=87 Identities=17% Similarity=0.192 Sum_probs=48.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCC-HHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhc
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD-LQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKN 255 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 255 (1355)
.++++++|++|+||||++..++........-..+..|+...... ..+-++..++.++.+.....+..+....+. .+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~-~~~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALE-QLR- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHH-HhC-
Confidence 36999999999999999999887764112234566676533211 122333444445444333233333333332 222
Q ss_pred CCeEEEEEeCc
Q 000679 256 VKRVLVILDNI 266 (1355)
Q Consensus 256 ~k~~LlvlDdv 266 (1355)
..=++|+|..
T Consensus 299 -~~DlVlIDt~ 308 (424)
T PRK05703 299 -DCDVILIDTA 308 (424)
T ss_pred -CCCEEEEeCC
Confidence 3457888865
No 219
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.011 Score=66.90 Aligned_cols=92 Identities=23% Similarity=0.243 Sum_probs=59.0
Q ss_pred ccchhHHHHHHHHHHhhcCC---------ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHH
Q 000679 157 QFDSRMKIFQNIMEVLKDTN---------VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNK 227 (1355)
Q Consensus 157 ~~~gr~~~~~~l~~~L~~~~---------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 227 (1355)
+...-.+++++|+++|.++. ++=|.++|++|.|||-||++++-+..+- | |...+..|+..
T Consensus 308 G~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP--F----F~~sGSEFdEm----- 376 (752)
T KOG0734|consen 308 GVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP--F----FYASGSEFDEM----- 376 (752)
T ss_pred ChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC--e----Eeccccchhhh-----
Confidence 33344557788888987531 4678899999999999999999987543 2 33333333311
Q ss_pred HHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCcccc
Q 000679 228 LSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL 269 (1355)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 269 (1355)
.-.. -..+++.+.+.-+..-++.|.+|.++..
T Consensus 377 -~VGv---------GArRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 377 -FVGV---------GARRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred -hhcc---------cHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 1111 1223445555555557899999998754
No 220
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.22 E-value=0.037 Score=57.73 Aligned_cols=203 Identities=12% Similarity=0.157 Sum_probs=111.2
Q ss_pred ccchhHHHHHHHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHHhh----hcCCCEEEEEEeCCC----------C---
Q 000679 157 QFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIE----DKLFDKVVFVEVTQT----------P--- 219 (1355)
Q Consensus 157 ~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~~s~~----------~--- 219 (1355)
...++++....+.+.......+-.-++|++|.||-|.+..+.++.-- +-.-+.+.|.+-|.. +
T Consensus 14 ~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlE 93 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLE 93 (351)
T ss_pred hcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEE
Confidence 35667777777776665566788999999999999988888776421 112344445543332 1
Q ss_pred --------CHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCCeE-EEEEeCcccc--ccccccCCCCCCccccCCC
Q 000679 220 --------DLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRV-LVILDNIWKL--LNLDAVGIPFGDVKKERND 288 (1355)
Q Consensus 220 --------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~-LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~ 288 (1355)
.-.-+..+++++.+-... +.. +..+.| ++|+-.+++. ++-.+++...-.
T Consensus 94 itPSDaG~~DRvViQellKevAQt~q-----------ie~--~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEk------- 153 (351)
T KOG2035|consen 94 ITPSDAGNYDRVVIQELLKEVAQTQQ-----------IET--QGQRPFKVVVINEADELTRDAQHALRRTMEK------- 153 (351)
T ss_pred eChhhcCcccHHHHHHHHHHHHhhcc-----------hhh--ccccceEEEEEechHhhhHHHHHHHHHHHHH-------
Confidence 012233333333221110 000 011344 4455554433 122222221111
Q ss_pred CCCCcEEEEEeCc--hhhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCC-CCcchHHHHHHHHHHhCCChHHHHHHHH
Q 000679 289 DRSRCTVLLTSRN--RDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSA-KASDFRVIADEIVRRCGGLPVAIKTIAN 365 (1355)
Q Consensus 289 ~~~~s~ilvTtR~--~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~~~i~~~c~glPLai~~~~~ 365 (1355)
-...+|+|+..-+ +-+.. .....-.+++...+++|....+.+.+..+. .-| ++++.+|+++++|.---...+-.
T Consensus 154 Ys~~~RlIl~cns~SriIep-IrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE 230 (351)
T KOG2035|consen 154 YSSNCRLILVCNSTSRIIEP-IRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLE 230 (351)
T ss_pred HhcCceEEEEecCcccchhH-HhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHH
Confidence 3445666654322 22222 122234788999999999999998874322 222 78899999999987654444433
Q ss_pred HHhcC-----------ChHHHHHHHHHH
Q 000679 366 ALKNK-----------RLYVWNDSLERL 382 (1355)
Q Consensus 366 ~l~~~-----------~~~~w~~~l~~l 382 (1355)
..+.+ +.-+|+-++.++
T Consensus 231 ~~~~~n~~~~a~~~~i~~~dWe~~i~e~ 258 (351)
T KOG2035|consen 231 AVRVNNEPFTANSQVIPKPDWEIYIQEI 258 (351)
T ss_pred HHHhccccccccCCCCCCccHHHHHHHH
Confidence 33321 345799888775
No 221
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.21 E-value=0.066 Score=68.56 Aligned_cols=179 Identities=16% Similarity=0.188 Sum_probs=96.0
Q ss_pred cccchhHHHHHHHHHHhh-------------cCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHH
Q 000679 156 EQFDSRMKIFQNIMEVLK-------------DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQ 222 (1355)
Q Consensus 156 ~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 222 (1355)
..+.|.+..++.+.+.+. -...+-|.++|++|+|||++|+++++... ..| +.++. .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~--~~f-----i~v~~----~ 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG--ANF-----IAVRG----P 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--CCE-----EEEeh----H
Confidence 346677777777666543 12345688999999999999999999864 222 22221 1
Q ss_pred HHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCccccccc---c---ccC-CCCCCccccCCC--CCCCc
Q 000679 223 TIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNL---D---AVG-IPFGDVKKERND--DRSRC 293 (1355)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~---~---~~~-~~~~~~~~~~~~--~~~~s 293 (1355)
++ +...- ......+..+.+......+.+|++|+++....- . ... .....++....+ ...+.
T Consensus 522 ~l----~~~~v------Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 522 EI----LSKWV------GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred HH----hhccc------CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 11 11111 112233445555544457899999998754110 0 000 000001111110 22344
Q ss_pred EEEEEeCchhhh-hhcC---CCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh
Q 000679 294 TVLLTSRNRDVL-CNDM---NSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLP 357 (1355)
Q Consensus 294 ~ilvTtR~~~v~-~~~~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 357 (1355)
-||.||...+.. .... .....+.+...+.++-.++|+.+.......++. -...+++.+.|.-
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~--~l~~la~~t~g~s 657 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDV--DLEELAEMTEGYT 657 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHcCCCC
Confidence 566666555332 1112 234678899999999999998776432222111 1456777787754
No 222
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.20 E-value=0.037 Score=59.33 Aligned_cols=91 Identities=18% Similarity=0.282 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhhc--CCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccC
Q 000679 162 MKIFQNIMEVLKD--TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQN 239 (1355)
Q Consensus 162 ~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~ 239 (1355)
...+..+.++..+ .+...+.++|.+|+|||+||.++++....+ -..+++++ ..++...+-..... ..
T Consensus 82 ~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it------~~~l~~~l~~~~~~--~~- 150 (244)
T PRK07952 82 MNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIIT------VADIMSAMKDTFSN--SE- 150 (244)
T ss_pred HHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEE------HHHHHHHHHHHHhh--cc-
Confidence 3345555555442 223578999999999999999999987543 23556664 44555555443321 00
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEEeCcccc
Q 000679 240 ENVFQRAEKLRQRLKNVKRVLVILDNIWKL 269 (1355)
Q Consensus 240 ~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 269 (1355)
.. ...+.+.+. +.=+||+||+...
T Consensus 151 ~~----~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 151 TS----EEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred cc----HHHHHHHhc--cCCEEEEeCCCCC
Confidence 11 123444454 4458889999654
No 223
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.19 E-value=0.0073 Score=67.43 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=40.7
Q ss_pred ccchhHHHHHHHHHHhhc------CCceEEEEEecCCCcHHHHHHHHHHHHhh
Q 000679 157 QFDSRMKIFQNIMEVLKD------TNVGMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1355)
Q Consensus 157 ~~~gr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1355)
.++|-++.++++++++.. ...+++.++|++|+||||||+.+++....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 578999999999999862 24588999999999999999999998753
No 224
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.15 E-value=0.15 Score=60.62 Aligned_cols=201 Identities=16% Similarity=0.140 Sum_probs=118.9
Q ss_pred ccchhHHHHHHHHHHhh----c-CCceEEEEEecCCCcHHHHHHHHHHHHhh---h---cCCCEEEEEEeCCCCCHHHHH
Q 000679 157 QFDSRMKIFQNIMEVLK----D-TNVGMIGVYGVNGVGKTTLVKQIAMQVIE---D---KLFDKVVFVEVTQTPDLQTIQ 225 (1355)
Q Consensus 157 ~~~gr~~~~~~l~~~L~----~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~---~~F~~~~wv~~s~~~~~~~~~ 225 (1355)
.+-+|+.+..+|-+++. + ...+.+-|.|.+|+|||..+..|.+.... + ..|+. +.|+.-.-..+.+++
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRLASPREIY 475 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceeecCHHHHH
Confidence 45689999999888876 2 34458899999999999999999986541 1 23443 234545556799999
Q ss_pred HHHHHhhccccccCCCHHHHHHHHHHHHh----cCCeEEEEEeCcccccc-ccccC-CCCCCccccCCCCCCCcEEEEEe
Q 000679 226 NKLSSDLELEFKQNENVFQRAEKLRQRLK----NVKRVLVILDNIWKLLN-LDAVG-IPFGDVKKERNDDRSRCTVLLTS 299 (1355)
Q Consensus 226 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~~-~~~~~-~~~~~~~~~~~~~~~~s~ilvTt 299 (1355)
..|..++.+.... ....++.+..++. ..+..++++|+++..-. -+++. ..|.+ +..++||++|.+
T Consensus 476 ~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdW------pt~~~sKLvvi~ 546 (767)
T KOG1514|consen 476 EKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDW------PTLKNSKLVVIA 546 (767)
T ss_pred HHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcC------CcCCCCceEEEE
Confidence 9999999876543 4445556666665 12668888998865421 01111 11111 156777766654
Q ss_pred Cch--hhhhhc-------CCCcceEecCCCCHHHHHHHHHHHhCC--CCCCcchHHHHHHHHHHhCCChHHHHHHHHHH
Q 000679 300 RNR--DVLCND-------MNSQKFFLIEVLSYEEAWCLFEKIVGD--SAKASDFRVIADEIVRRCGGLPVAIKTIANAL 367 (1355)
Q Consensus 300 R~~--~v~~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~~~--~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 367 (1355)
=.. +..... .-....+...|-+.++-.+....+... ...+...+-+|++|+.--|-.-.|+.+.-+..
T Consensus 547 IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 547 IANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred ecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 211 111000 011235566777777777777666532 22233344455555555555555555554433
No 225
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.15 E-value=0.02 Score=62.28 Aligned_cols=92 Identities=24% Similarity=0.302 Sum_probs=57.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcC----CCEEEEEEeCCCCCHHHHHHHHHHhhcccccc---------CCCH
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKL----FDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQ---------NENV 242 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---------~~~~ 242 (1355)
...++.|+|.+|+|||++|.+++........ -..++|++....++...+.. +++..+..... ..+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCCH
Confidence 3479999999999999999999865432221 36799999888777654433 33333221110 0112
Q ss_pred ---HHHHHHHHHHHhcC-CeEEEEEeCccc
Q 000679 243 ---FQRAEKLRQRLKNV-KRVLVILDNIWK 268 (1355)
Q Consensus 243 ---~~~~~~l~~~l~~~-k~~LlvlDdv~~ 268 (1355)
......+.+.+.+. +--++|+|.+..
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 22334455555555 667899998854
No 226
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.14 E-value=0.014 Score=65.73 Aligned_cols=37 Identities=27% Similarity=0.424 Sum_probs=29.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEe
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEV 215 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 215 (1355)
...+.++|..|+|||.||.++++....+. ..++|+++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g--~~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRG--KSVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCC--CeEEEEEH
Confidence 37799999999999999999999875432 35667654
No 227
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.13 E-value=0.07 Score=58.70 Aligned_cols=56 Identities=21% Similarity=0.296 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHH
Q 000679 163 KIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQ 225 (1355)
Q Consensus 163 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 225 (1355)
+.++++..++..+ .-|.+.|++|+|||++|+.+++.. . ...++++.....+..+++
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l--g---~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR--D---RPVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh--C---CCEEEEeCCccCCHHHHh
Confidence 3345555555443 456789999999999999999743 1 123455555555555443
No 228
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.089 Score=64.71 Aligned_cols=101 Identities=20% Similarity=0.303 Sum_probs=61.0
Q ss_pred ccchhHHHHHHHHHHhh-------c--CCceEEEEEecCCCcHHHHHHHHHHHHhhhcCC---CEEEEEEeCCCCCHHHH
Q 000679 157 QFDSRMKIFQNIMEVLK-------D--TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLF---DKVVFVEVTQTPDLQTI 224 (1355)
Q Consensus 157 ~~~gr~~~~~~l~~~L~-------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~~~~~~~~ 224 (1355)
.++|-+.+++.+.+.+. + ...++...+|+.|||||.||+.++... | +..+-++.|+.-...
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L-----fg~e~aliR~DMSEy~EkH-- 564 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL-----FGDEQALIRIDMSEYMEKH-- 564 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh-----cCCCccceeechHHHHHHH--
Confidence 36799999999988876 1 234567789999999999999999877 5 334444444321111
Q ss_pred HHHHHHhhccccccCCCHHHHHHHHHHHHhcCCeE-EEEEeCcccc
Q 000679 225 QNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRV-LVILDNIWKL 269 (1355)
Q Consensus 225 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~-LlvlDdv~~~ 269 (1355)
. .+.+-+..+....-++ -..+-+..++ ++| .|+||+|...
T Consensus 565 --s-VSrLIGaPPGYVGyee-GG~LTEaVRr-~PySViLlDEIEKA 605 (786)
T COG0542 565 --S-VSRLIGAPPGYVGYEE-GGQLTEAVRR-KPYSVILLDEIEKA 605 (786)
T ss_pred --H-HHHHhCCCCCCceecc-ccchhHhhhc-CCCeEEEechhhhc
Confidence 1 2223222222111111 2344555554 666 7888999765
No 229
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.10 E-value=0.021 Score=63.50 Aligned_cols=87 Identities=17% Similarity=0.250 Sum_probs=57.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhcccccc-----CCCHHHHHHHHH
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQ-----NENVFQRAEKLR 250 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 250 (1355)
..+++-|+|++|+||||||.+++...... -..++||+.-+.++.. .+++++.+.+. ....++....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 34799999999999999999988776432 3567899877666553 34455443221 234455555555
Q ss_pred HHHhcCCeEEEEEeCcccc
Q 000679 251 QRLKNVKRVLVILDNIWKL 269 (1355)
Q Consensus 251 ~~l~~~k~~LlvlDdv~~~ 269 (1355)
..++++.--++|+|.|...
T Consensus 127 ~li~~~~~~lIVIDSv~al 145 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVAAL 145 (321)
T ss_pred HHhhccCCcEEEEcchhhh
Confidence 5555556779999998643
No 230
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.07 E-value=0.0055 Score=58.55 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 000679 179 MIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
+|+|.|++|+||||+|+.++...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 231
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.05 E-value=0.029 Score=60.86 Aligned_cols=76 Identities=29% Similarity=0.367 Sum_probs=49.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhc
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKN 255 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 255 (1355)
+..-+.++|.+|+|||.||.++.++.. +..+ .+.+++ ..++..++....... ....++.+.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~------~~el~~~Lk~~~~~~--------~~~~~l~~~l~- 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFIT------APDLLSKLKAAFDEG--------RLEEKLLRELK- 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEE------HHHHHHHHHHHHhcC--------chHHHHHHHhh-
Confidence 567899999999999999999999987 4333 344553 455666665554321 11223334333
Q ss_pred CCeEEEEEeCcccc
Q 000679 256 VKRVLVILDNIWKL 269 (1355)
Q Consensus 256 ~k~~LlvlDdv~~~ 269 (1355)
+-=||||||+-..
T Consensus 167 -~~dlLIiDDlG~~ 179 (254)
T COG1484 167 -KVDLLIIDDIGYE 179 (254)
T ss_pred -cCCEEEEecccCc
Confidence 4459999998653
No 232
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.04 E-value=0.046 Score=59.03 Aligned_cols=91 Identities=22% Similarity=0.259 Sum_probs=54.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhc----CCCEEEEEEeCCCCCHHHHHHHHHHhhcccc---------ccCCCHH
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDK----LFDKVVFVEVTQTPDLQTIQNKLSSDLELEF---------KQNENVF 243 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~---------~~~~~~~ 243 (1355)
..++.|+|.+|+|||++|.+++....... .=..++|++....++...+. ++++..+... ....+.+
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYNGE 97 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCCHH
Confidence 47999999999999999999987653221 01568899988777765543 3333322110 0112334
Q ss_pred HHHHHHHHHHh---cCCeEEEEEeCccc
Q 000679 244 QRAEKLRQRLK---NVKRVLVILDNIWK 268 (1355)
Q Consensus 244 ~~~~~l~~~l~---~~k~~LlvlDdv~~ 268 (1355)
+....+.+... ..+.-++|+|.+..
T Consensus 98 ~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 98 QQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred HHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 44443333332 33556899999754
No 233
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.12 Score=61.31 Aligned_cols=98 Identities=24% Similarity=0.307 Sum_probs=63.3
Q ss_pred ccchhHHHHHHHHHHhh------cCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHH
Q 000679 157 QFDSRMKIFQNIMEVLK------DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSS 230 (1355)
Q Consensus 157 ~~~gr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 230 (1355)
+-.|.++.+++|++++. ..+.++++.+|++|+|||.+|+.++.-.-. .| +-++|+.-.|..+|-..=-.
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnR--kF---fRfSvGG~tDvAeIkGHRRT 486 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNR--KF---FRFSVGGMTDVAEIKGHRRT 486 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCC--ce---EEEeccccccHHhhccccee
Confidence 34599999999999886 345689999999999999999999987742 23 23466666666554211000
Q ss_pred hhccccccCCCHHHHHHHHHHHHhc--CCeEEEEEeCcccc
Q 000679 231 DLELEFKQNENVFQRAEKLRQRLKN--VKRVLVILDNIWKL 269 (1355)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~l~~~l~~--~k~~LlvlDdv~~~ 269 (1355)
- ....-.++.+.|+. ..+=|+.+|.|+..
T Consensus 487 Y----------VGAMPGkiIq~LK~v~t~NPliLiDEvDKl 517 (906)
T KOG2004|consen 487 Y----------VGAMPGKIIQCLKKVKTENPLILIDEVDKL 517 (906)
T ss_pred e----------eccCChHHHHHHHhhCCCCceEEeehhhhh
Confidence 0 01111233444442 25568889998653
No 234
>PRK09354 recA recombinase A; Provisional
Probab=95.96 E-value=0.028 Score=63.04 Aligned_cols=87 Identities=17% Similarity=0.249 Sum_probs=59.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhcccccc-----CCCHHHHHHHHH
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQ-----NENVFQRAEKLR 250 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 250 (1355)
..+++-|+|+.|+||||||.+++...... =..++||+.-..++.. .+++++.+.+. ....++....+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 34788999999999999999988776432 3678899888777753 34555443221 234455555555
Q ss_pred HHHhcCCeEEEEEeCcccc
Q 000679 251 QRLKNVKRVLVILDNIWKL 269 (1355)
Q Consensus 251 ~~l~~~k~~LlvlDdv~~~ 269 (1355)
..+++++--+||+|.|-..
T Consensus 132 ~li~s~~~~lIVIDSvaaL 150 (349)
T PRK09354 132 TLVRSGAVDLIVVDSVAAL 150 (349)
T ss_pred HHhhcCCCCEEEEeChhhh
Confidence 5555556779999998643
No 235
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.96 E-value=0.025 Score=62.90 Aligned_cols=86 Identities=20% Similarity=0.276 Sum_probs=57.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhcccccc-----CCCHHHHHHHHH
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQ-----NENVFQRAEKLR 250 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 250 (1355)
..+++-|+|++|+||||||.+++..... .-..++||+.-..++.. .+++++.+.+. ..+.++....+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~--~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQK--LGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 3478899999999999999998877642 24568899887766653 34444433221 234445555555
Q ss_pred HHHhcCCeEEEEEeCccc
Q 000679 251 QRLKNVKRVLVILDNIWK 268 (1355)
Q Consensus 251 ~~l~~~k~~LlvlDdv~~ 268 (1355)
..++.+.--++|+|.|-.
T Consensus 127 ~li~s~~~~lIVIDSvaa 144 (325)
T cd00983 127 SLVRSGAVDLIVVDSVAA 144 (325)
T ss_pred HHHhccCCCEEEEcchHh
Confidence 545555667999999854
No 236
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.018 Score=70.54 Aligned_cols=164 Identities=14% Similarity=0.175 Sum_probs=92.6
Q ss_pred cccchhHHHHHHHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHHhhhcC-----CCEEEEEEeCCCCCHHHHHHHHHH
Q 000679 156 EQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKL-----FDKVVFVEVTQTPDLQTIQNKLSS 230 (1355)
Q Consensus 156 ~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~~s~~~~~~~~~~~i~~ 230 (1355)
..++||++++.++++.|....-.--.++|.+|+|||++|.-++.+.-..+- ...++-.+ +..
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD-------------~g~ 236 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD-------------LGS 236 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec-------------HHH
Confidence 347899999999999998432222357899999999999999887643211 11111111 111
Q ss_pred hhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCcccccccccc---CCCCCCccccCCCCCCCcEEEEEeCchhh---
Q 000679 231 DLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNLDAV---GIPFGDVKKERNDDRSRCTVLLTSRNRDV--- 304 (1355)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~~---~~~~~~~~~~~~~~~~~s~ilvTtR~~~v--- 304 (1355)
-..+.... -..++++..+.+.+++.++..|++|.+.....-..- ......+++-.+..+.--.|-.||-++--
T Consensus 237 LvAGakyR-GeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~i 315 (786)
T COG0542 237 LVAGAKYR-GEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKYI 315 (786)
T ss_pred Hhcccccc-CcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHHh
Confidence 11111111 345667777777777656899999998765211100 00001111111113333345666644311
Q ss_pred h--hhcCCCcceEecCCCCHHHHHHHHHHHh
Q 000679 305 L--CNDMNSQKFFLIEVLSYEEAWCLFEKIV 333 (1355)
Q Consensus 305 ~--~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 333 (1355)
- .......+.+.+...+.+++...++-..
T Consensus 316 EKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 316 EKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred hhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 0 1013345788889999999998887554
No 237
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.94 E-value=0.054 Score=58.52 Aligned_cols=92 Identities=23% Similarity=0.334 Sum_probs=58.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCC-HHHHHHHHHHhhccc------cccCCCHHH-----
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD-LQTIQNKLSSDLELE------FKQNENVFQ----- 244 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~------~~~~~~~~~----- 244 (1355)
-..++|.|..|+||||||+.+++..+.+ +-+.++++-+++... +.++.+.+...-... ....+....
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~-~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKA-HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 3578999999999999999999987642 235677788877654 566666665431110 001111111
Q ss_pred -HHHHHHHHHh--cCCeEEEEEeCcccc
Q 000679 245 -RAEKLRQRLK--NVKRVLVILDNIWKL 269 (1355)
Q Consensus 245 -~~~~l~~~l~--~~k~~LlvlDdv~~~ 269 (1355)
..-.+.+++. +++++|+++||+...
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 1223455554 279999999998544
No 238
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.88 E-value=0.2 Score=58.64 Aligned_cols=88 Identities=20% Similarity=0.273 Sum_probs=52.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCC-CCHHHHHHHHHHhhccccccC---CCHHHHHHHHHH
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQT-PDLQTIQNKLSSDLELEFKQN---ENVFQRAEKLRQ 251 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~ 251 (1355)
...+|.++|..|+||||.|..++.....+ .+ .+..|+.... +...+.++.++.+++.+.... .+....+....+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~-g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK-GL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc-CC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 46799999999999999999999887643 23 3444544321 123455666677766543321 222333333334
Q ss_pred HHhcCCeEEEEEeCcc
Q 000679 252 RLKNVKRVLVILDNIW 267 (1355)
Q Consensus 252 ~l~~~k~~LlvlDdv~ 267 (1355)
.+.. . -++|+|..-
T Consensus 172 ~~~~-~-DvVIIDTAG 185 (437)
T PRK00771 172 KFKK-A-DVIIVDTAG 185 (437)
T ss_pred Hhhc-C-CEEEEECCC
Confidence 4432 3 568888763
No 239
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.80 E-value=0.012 Score=75.27 Aligned_cols=45 Identities=22% Similarity=0.332 Sum_probs=36.8
Q ss_pred ccchhHHHHHHHHHHhhc-------C--CceEEEEEecCCCcHHHHHHHHHHHH
Q 000679 157 QFDSRMKIFQNIMEVLKD-------T--NVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 157 ~~~gr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
.++|.+..++.+.+.+.. + ...++.++|+.|+|||.+|+.++...
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred eEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 477999999999888751 1 23578999999999999999998875
No 240
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.80 E-value=0.053 Score=60.61 Aligned_cols=95 Identities=19% Similarity=0.275 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHhhc----CCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccc
Q 000679 160 SRMKIFQNIMEVLKD----TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELE 235 (1355)
Q Consensus 160 gr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 235 (1355)
+|....+...+++.. ...+-+.++|..|+|||.||.++++.... ..+. +.++++ .+++..+.......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~-~g~~-v~~~~~------~~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAK-KGVS-STLLHF------PEFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHH-cCCC-EEEEEH------HHHHHHHHHHHhcC
Confidence 565566656666652 23467899999999999999999999863 2333 455544 34555555443211
Q ss_pred cccCCCHHHHHHHHHHHHhcCCeEEEEEeCcccc--cccc
Q 000679 236 FKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL--LNLD 273 (1355)
Q Consensus 236 ~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~--~~~~ 273 (1355)
+ .....+.+. +-=||||||+... ..|.
T Consensus 207 -----~----~~~~l~~l~--~~dlLiIDDiG~e~~s~~~ 235 (306)
T PRK08939 207 -----S----VKEKIDAVK--EAPVLMLDDIGAEQMSSWV 235 (306)
T ss_pred -----c----HHHHHHHhc--CCCEEEEecCCCccccHHH
Confidence 1 122333343 5669999999644 4454
No 241
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.78 E-value=0.036 Score=63.90 Aligned_cols=139 Identities=14% Similarity=0.109 Sum_probs=79.0
Q ss_pred cchhHHHHHHHHHHhh-cCCceE-EEEEecCCCcHHHHHHHHHHHHhhhc-------------------CCCEEEEEEeC
Q 000679 158 FDSRMKIFQNIMEVLK-DTNVGM-IGVYGVNGVGKTTLVKQIAMQVIEDK-------------------LFDKVVFVEVT 216 (1355)
Q Consensus 158 ~~gr~~~~~~l~~~L~-~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~~s 216 (1355)
++|-+....++..+.. .++.+- +-++|+.|+||||+|..+++..--.. ....+..++.+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 4566667777777776 333444 99999999999999999999874211 12344555555
Q ss_pred CCCC---HHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCccccc--cccccCCCCCCccccCCCCCC
Q 000679 217 QTPD---LQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRS 291 (1355)
Q Consensus 217 ~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~ 291 (1355)
.... ..+..+++.+....... .++.-++++|+++... .-+.+...+-. ...
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~-----------------~~~~kviiidead~mt~~A~nallk~lEe-------p~~ 138 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPL-----------------EGGYKVVIIDEADKLTEDAANALLKTLEE-------PPK 138 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCC-----------------CCCceEEEeCcHHHHhHHHHHHHHHHhcc-------CCC
Confidence 4444 23333333333322111 1467789999998763 22333222222 455
Q ss_pred CcEEEEEeCch-hhhhhcCCCcceEecCCC
Q 000679 292 RCTVLLTSRNR-DVLCNDMNSQKFFLIEVL 320 (1355)
Q Consensus 292 ~s~ilvTtR~~-~v~~~~~~~~~~~~l~~L 320 (1355)
.+.+|++|... .+..........+++.+.
T Consensus 139 ~~~~il~~n~~~~il~tI~SRc~~i~f~~~ 168 (325)
T COG0470 139 NTRFILITNDPSKILPTIRSRCQRIRFKPP 168 (325)
T ss_pred CeEEEEEcCChhhccchhhhcceeeecCCc
Confidence 67777777644 232211222346666663
No 242
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.78 E-value=0.085 Score=59.46 Aligned_cols=89 Identities=20% Similarity=0.225 Sum_probs=49.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCC--HHHHHHHHHHhhccccccCCCHHHHHHHHHHHH
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD--LQTIQNKLSSDLELEFKQNENVFQRAEKLRQRL 253 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 253 (1355)
+.++|+++|++|+||||++..++.....+ .+ .+..++.. .+. ..+-++..++.++.+.....+..+....+ +.+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~-Gk-kVglI~aD-t~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL-~~l 315 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK-KK-TVGFITTD-HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRAL-TYF 315 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc-CC-cEEEEecC-CcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHH-HHH
Confidence 35799999999999999999999876532 22 34445543 222 22223344444444433223444444333 333
Q ss_pred hcC-CeEEEEEeCccc
Q 000679 254 KNV-KRVLVILDNIWK 268 (1355)
Q Consensus 254 ~~~-k~~LlvlDdv~~ 268 (1355)
.+. +.=++++|-.-.
T Consensus 316 k~~~~~DvVLIDTaGR 331 (436)
T PRK11889 316 KEEARVDYILIDTAGK 331 (436)
T ss_pred HhccCCCEEEEeCccc
Confidence 321 234677776643
No 243
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.77 E-value=0.052 Score=63.94 Aligned_cols=191 Identities=12% Similarity=0.144 Sum_probs=109.7
Q ss_pred cCCccccchhHHHHHHHHHHhhcCC-ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHH
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLKDTN-VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSS 230 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 230 (1355)
|....+++|-+.....|...+..+. ..-....|+-|+||||+|+-++.-.--.. | .....+..-...+.|..
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEINE 84 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhhc
Confidence 3445567899988888888887543 24556789999999999999998653211 0 11122222223333332
Q ss_pred hhccccc----cCCCHHHHHHHHHHHHh----cCCeEEEEEeCcccc--ccccccCCCCCCccccCCCCCCCcEEE-EEe
Q 000679 231 DLELEFK----QNENVFQRAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVL-LTS 299 (1355)
Q Consensus 231 ~l~~~~~----~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~s~il-vTt 299 (1355)
.-..+.- ......+.++.+.+... .++.=..|+|.|.-. ..|+.+..-+-. -....+.| .||
T Consensus 85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEE-------PP~hV~FIlATT 157 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEE-------PPSHVKFILATT 157 (515)
T ss_pred CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhccccc-------CccCeEEEEecC
Confidence 2100000 00122333444544443 235558899999754 456666544433 33344444 455
Q ss_pred CchhhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCCh
Q 000679 300 RNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLP 357 (1355)
Q Consensus 300 R~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 357 (1355)
-...+........+.|.++.++.++-...+...+..+....+ ++....|++..+|..
T Consensus 158 e~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e-~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 158 EPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE-EDALSLIARAAEGSL 214 (515)
T ss_pred CcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccC-HHHHHHHHHHcCCCh
Confidence 555555434455678999999999988888887744332222 344556677766644
No 244
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.76 E-value=0.049 Score=60.46 Aligned_cols=88 Identities=22% Similarity=0.301 Sum_probs=48.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCC-CHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHh
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP-DLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK 254 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 254 (1355)
..++|+++|++|+||||++..++.....+..-..+..|+..... ...+-+....+.++.+.....+..+. ....+.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l-~~~l~~~~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKEL-RKALDRLR 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHH-HHHHHHcc
Confidence 35799999999999999999999877543111245556654321 12333334444444443332333333 23333333
Q ss_pred cCCeEEEEEeCc
Q 000679 255 NVKRVLVILDNI 266 (1355)
Q Consensus 255 ~~k~~LlvlDdv 266 (1355)
..=+|++|..
T Consensus 272 --~~d~vliDt~ 281 (282)
T TIGR03499 272 --DKDLILIDTA 281 (282)
T ss_pred --CCCEEEEeCC
Confidence 3347777753
No 245
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.028 Score=66.22 Aligned_cols=160 Identities=19% Similarity=0.154 Sum_probs=84.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCC--CHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHh
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP--DLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK 254 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 254 (1355)
..-|-|.|+.|+|||+||+++++... +++.-.+.+|+.+.-. ..+.+++.+.. .+.+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~-----------------vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNN-----------------VFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHH-----------------HHHHHHh
Confidence 45788999999999999999999886 4555556666665432 23333332221 2233444
Q ss_pred cCCeEEEEEeCcccc--------cccccc----CCCCCCccccCCCCCCCcEEEEEeCchhhhhh----cCCCcceEecC
Q 000679 255 NVKRVLVILDNIWKL--------LNLDAV----GIPFGDVKKERNDDRSRCTVLLTSRNRDVLCN----DMNSQKFFLIE 318 (1355)
Q Consensus 255 ~~k~~LlvlDdv~~~--------~~~~~~----~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~----~~~~~~~~~l~ 318 (1355)
. .+-+|||||++-. .+|... ...+.++.+.....+..-++|.|........- ..-......+.
T Consensus 493 ~-~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 493 Y-APSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred h-CCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 3 8889999998643 122211 11111111111112222234444444322110 11123467788
Q ss_pred CCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCC
Q 000679 319 VLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGL 356 (1355)
Q Consensus 319 ~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~gl 356 (1355)
.+...+-.++++........ ....+...-++.+|+|.
T Consensus 572 ap~~~~R~~IL~~~~s~~~~-~~~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 572 APAVTRRKEILTTIFSKNLS-DITMDDLDFLSVKTEGY 608 (952)
T ss_pred CcchhHHHHHHHHHHHhhhh-hhhhHHHHHHHHhcCCc
Confidence 88888777777665533221 11122233377777664
No 246
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.75 E-value=0.012 Score=58.58 Aligned_cols=102 Identities=23% Similarity=0.257 Sum_probs=72.9
Q ss_pred CcceEEEecCCCccccCcccccccCCcEEEecCCCCCC--ccccccccccceeecccCCCCccch--hhhccccCcEEec
Q 000679 560 NELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGD--VAIVGQLKKLEILSFRNSDIQQLPR--EIGQLVQLRLLDL 635 (1355)
Q Consensus 560 ~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~--p~~i~~L~~L~~L~L~~~~l~~lP~--~i~~L~~L~~L~l 635 (1355)
...-.+||++|.+..++. |..+..|.+|.|.+|+|.. |.--.-+.+|.+|.|.+|++.++-+ .+..+++|++|.+
T Consensus 42 d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 456678899998877764 7788899999999999887 3333346779999999988877642 3556788888887
Q ss_pred cCcchhhccc---hhHHhhhccccccccCCC
Q 000679 636 RNCRRLQAIA---PNVISKLSRLEELYMGDS 663 (1355)
Q Consensus 636 ~~~~~l~~~p---~~~i~~L~~L~~L~l~~~ 663 (1355)
-++. +..-. .-++.++++|++|++...
T Consensus 121 l~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 7743 32221 123678888999987553
No 247
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.73 E-value=0.028 Score=68.31 Aligned_cols=48 Identities=19% Similarity=0.329 Sum_probs=39.6
Q ss_pred CccccchhHHHHHHHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHH
Q 000679 154 AYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 154 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
....++|.+..++.+...+......-|.|+|+.|+|||++|+.+++..
T Consensus 63 ~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 63 SFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344678999999998887766555677899999999999999998764
No 248
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.73 E-value=0.019 Score=56.57 Aligned_cols=120 Identities=19% Similarity=0.247 Sum_probs=69.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEe---C------------------CCC---------------
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEV---T------------------QTP--------------- 219 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~---s------------------~~~--------------- 219 (1355)
...++.++|++|+||||+.+.+|...+.. .+.+|+.- + |++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 34689999999999999999999987543 33444421 1 111
Q ss_pred ------CHHHHHHHHHH---hhcccccc------CCCHHHHHHHHHHHHhcCCeEEEEEeC----ccccccccccCCCCC
Q 000679 220 ------DLQTIQNKLSS---DLELEFKQ------NENVFQRAEKLRQRLKNVKRVLVILDN----IWKLLNLDAVGIPFG 280 (1355)
Q Consensus 220 ------~~~~~~~~i~~---~l~~~~~~------~~~~~~~~~~l~~~l~~~k~~LlvlDd----v~~~~~~~~~~~~~~ 280 (1355)
...++.+.... ..+..... -..-++.--.+.+.+-+ ++-+|+-|. ++....|+-+. .|.
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~-~P~vLlADEPTGNLDp~~s~~im~-lfe 181 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVN-QPAVLLADEPTGNLDPDLSWEIMR-LFE 181 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHcc-CCCeEeecCCCCCCChHHHHHHHH-HHH
Confidence 11222222222 22221111 02223334456666665 888888884 55445555432 121
Q ss_pred CccccCCCCCCCcEEEEEeCchhhhh
Q 000679 281 DVKKERNDDRSRCTVLLTSRNRDVLC 306 (1355)
Q Consensus 281 ~~~~~~~~~~~~s~ilvTtR~~~v~~ 306 (1355)
.+ +..|..||++|.+..+..
T Consensus 182 ei------nr~GtTVl~ATHd~~lv~ 201 (223)
T COG2884 182 EI------NRLGTTVLMATHDLELVN 201 (223)
T ss_pred HH------hhcCcEEEEEeccHHHHH
Confidence 11 678999999999998764
No 249
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.73 E-value=0.23 Score=64.14 Aligned_cols=45 Identities=24% Similarity=0.392 Sum_probs=35.8
Q ss_pred ccchhHHHHHHHHHHhhc-------CC--ceEEEEEecCCCcHHHHHHHHHHHH
Q 000679 157 QFDSRMKIFQNIMEVLKD-------TN--VGMIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 157 ~~~gr~~~~~~l~~~L~~-------~~--~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
.++|.+..++.+...+.. ++ ..++.++|+.|+|||++|+.+++..
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 467888888888877752 11 2478899999999999999999765
No 250
>PRK06696 uridine kinase; Validated
Probab=95.72 E-value=0.016 Score=62.06 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHhh---cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 000679 160 SRMKIFQNIMEVLK---DTNVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1355)
Q Consensus 160 gr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1355)
.|.+.+++|.+.+. .....+|+|.|.+|+||||+|+.+.....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46777788887775 35678999999999999999999998874
No 251
>PRK04132 replication factor C small subunit; Provisional
Probab=95.69 E-value=0.14 Score=64.48 Aligned_cols=152 Identities=11% Similarity=0.040 Sum_probs=91.6
Q ss_pred cCCCcHHHHHHHHHHHHhhhcCC-CEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEE
Q 000679 185 VNGVGKTTLVKQIAMQVIEDKLF-DKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVIL 263 (1355)
Q Consensus 185 ~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~Llvl 263 (1355)
|.++||||+|..++++.--. .+ ..++-+++|+...+..+.. +++.+..... +...+.-++|+
T Consensus 574 Ph~lGKTT~A~ala~~l~g~-~~~~~~lElNASd~rgid~IR~-iIk~~a~~~~---------------~~~~~~KVvII 636 (846)
T PRK04132 574 PTVLHNTTAALALARELFGE-NWRHNFLELNASDERGINVIRE-KVKEFARTKP---------------IGGASFKIIFL 636 (846)
T ss_pred CCcccHHHHHHHHHHhhhcc-cccCeEEEEeCCCcccHHHHHH-HHHHHHhcCC---------------cCCCCCEEEEE
Confidence 78899999999999986221 22 3467778887656554443 3332211100 01124579999
Q ss_pred eCccccc--cccccCCCCCCccccCCCCCCCcEEEEEeCch-hhhhhcCCCcceEecCCCCHHHHHHHHHHHhCCCCCCc
Q 000679 264 DNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSRNR-DVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKAS 340 (1355)
Q Consensus 264 Ddv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~ 340 (1355)
|+++... +.+.+...+-. ....+++|.+|.+. .+..........+++.+++.++-.+.+.+.+......
T Consensus 637 DEaD~Lt~~AQnALLk~lEe-------p~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~- 708 (846)
T PRK04132 637 DEADALTQDAQQALRRTMEM-------FSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE- 708 (846)
T ss_pred ECcccCCHHHHHHHHHHhhC-------CCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC-
Confidence 9998873 44444333322 23456666665544 3332123335689999999999988888766322111
Q ss_pred chHHHHHHHHHHhCCChHHHH
Q 000679 341 DFRVIADEIVRRCGGLPVAIK 361 (1355)
Q Consensus 341 ~~~~~~~~i~~~c~glPLai~ 361 (1355)
--.+....|++.++|-+-.+.
T Consensus 709 i~~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 709 LTEEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred CCHHHHHHHHHHcCCCHHHHH
Confidence 114567899999999885443
No 252
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.67 E-value=0.0067 Score=63.56 Aligned_cols=82 Identities=17% Similarity=0.276 Sum_probs=54.4
Q ss_pred cCCCcceEEEecCCCccc---cCcccccccCCcEEEecCCCCCC-cccc-ccccccceeecccCCC--Cccchhhhcccc
Q 000679 557 EGMNELRVVHFTRTCFLS---LPSSLVCLISLRTLSLEGCQVGD-VAIV-GQLKKLEILSFRNSDI--QQLPREIGQLVQ 629 (1355)
Q Consensus 557 ~~l~~Lr~L~L~~~~~~~---lp~~i~~L~~Lr~L~L~~~~i~~-p~~i-~~L~~L~~L~L~~~~l--~~lP~~i~~L~~ 629 (1355)
+...+++.|||.+|.|.+ +-.-+.+|++|++|+|+.|++.. ..+. -.+.+|++|-|.++.+ +..-..+..++.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 456677778888877655 33334577788888888887665 4444 3667788888877744 344445566777
Q ss_pred CcEEeccCc
Q 000679 630 LRLLDLRNC 638 (1355)
Q Consensus 630 L~~L~l~~~ 638 (1355)
++.|.++.+
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 777777664
No 253
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.16 Score=60.00 Aligned_cols=159 Identities=14% Similarity=0.167 Sum_probs=83.9
Q ss_pred cccchhHHHHHHHHHHhh-------------cCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHH
Q 000679 156 EQFDSRMKIFQNIMEVLK-------------DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQ 222 (1355)
Q Consensus 156 ~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 222 (1355)
.++-|-++.+.+|-+... -...+-|-.+|++|.|||++|+++++.... .| +.++..
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~--nF-----lsvkgp---- 502 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGM--NF-----LSVKGP---- 502 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcC--Ce-----eeccCH----
Confidence 345556666655554443 135678899999999999999999998753 34 333221
Q ss_pred HHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCccccccccc--cC----CCCCCccccCCCCCCCcEEE
Q 000679 223 TIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNLDA--VG----IPFGDVKKERNDDRSRCTVL 296 (1355)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~--~~----~~~~~~~~~~~~~~~~s~il 296 (1355)
+++ ...- -..+..+..+.+.-++-..++|.||.++....-.. -. ..+..++....+......|+
T Consensus 503 EL~----sk~v------GeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ 572 (693)
T KOG0730|consen 503 ELF----SKYV------GESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVL 572 (693)
T ss_pred HHH----HHhc------CchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEE
Confidence 111 1111 11233444444444444678899998875421110 00 00011111111222222333
Q ss_pred E---EeCchhhhhhcCC---CcceEecCCCCHHHHHHHHHHHhCC
Q 000679 297 L---TSRNRDVLCNDMN---SQKFFLIEVLSYEEAWCLFEKIVGD 335 (1355)
Q Consensus 297 v---TtR~~~v~~~~~~---~~~~~~l~~L~~~~~~~lf~~~~~~ 335 (1355)
| |-|...+-...+. ....+.+..-+.+.-.++|+.++..
T Consensus 573 ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 573 VIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK 617 (693)
T ss_pred EEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc
Confidence 3 2343333222233 3457777777777888999998854
No 254
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.61 E-value=0.058 Score=58.79 Aligned_cols=57 Identities=21% Similarity=0.360 Sum_probs=43.4
Q ss_pred ccccchhHHHHHHHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHH-hhhcCCCEEE
Q 000679 155 YEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQV-IEDKLFDKVV 211 (1355)
Q Consensus 155 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~F~~~~ 211 (1355)
..++-+|..+-.--+++|.++.+..|.+.|.+|.|||-||-++.-.. .+++.|..++
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~Kii 280 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKII 280 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEE
Confidence 34566777776667788889999999999999999999998876543 3345666544
No 255
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.57 E-value=0.12 Score=66.19 Aligned_cols=180 Identities=16% Similarity=0.149 Sum_probs=94.0
Q ss_pred ccccchhHHHHHHHHHHhhc-------------CCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCH
Q 000679 155 YEQFDSRMKIFQNIMEVLKD-------------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDL 221 (1355)
Q Consensus 155 ~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 221 (1355)
..++.|.+..++++.+++.- ...+-|.++|++|+|||++|+.+++... ..| +.++.+
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~--~~~---i~i~~~----- 246 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG--AYF---ISINGP----- 246 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC--CeE---EEEecH-----
Confidence 34577999998888777631 2345788999999999999999998763 112 222211
Q ss_pred HHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCcccccccc---------ccCCCCCCccccCCCCCCC
Q 000679 222 QTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNLD---------AVGIPFGDVKKERNDDRSR 292 (1355)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 292 (1355)
++. .... ......+..+.+........+|++|+++....-. .+...+..++... ...+
T Consensus 247 -~i~----~~~~------g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l--~~~~ 313 (733)
T TIGR01243 247 -EIM----SKYY------GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGL--KGRG 313 (733)
T ss_pred -HHh----cccc------cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhcc--ccCC
Confidence 111 1100 0112223334444333467899999986531100 0000011111110 1223
Q ss_pred cEEEE-EeCchh-hhhh--cC-CCcceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHH
Q 000679 293 CTVLL-TSRNRD-VLCN--DM-NSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVA 359 (1355)
Q Consensus 293 s~ilv-TtR~~~-v~~~--~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 359 (1355)
..++| ||.... +... .. .....+.+...+.++-.++++.+........+ .....+++.+.|.--|
T Consensus 314 ~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d--~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 314 RVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED--VDLDKLAEVTHGFVGA 383 (733)
T ss_pred CEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc--cCHHHHHHhCCCCCHH
Confidence 33444 444332 1110 11 12346788888989888888866533221111 1245788888886544
No 256
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.55 E-value=0.053 Score=59.09 Aligned_cols=90 Identities=26% Similarity=0.341 Sum_probs=56.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhc----CCCEEEEEEeCCCCCHHHHHHHHHHhhcccccc---------CCCHH
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDK----LFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQ---------NENVF 243 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---------~~~~~ 243 (1355)
..+.=|+|.+|+|||+||.+++-...... .=..++||+-...|+...+. +|++..+.+... ..+..
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 36889999999999999998876643221 12469999999989887775 456554332111 12222
Q ss_pred H---HHHHHHHHHhcCCeEEEEEeCcc
Q 000679 244 Q---RAEKLRQRLKNVKRVLVILDNIW 267 (1355)
Q Consensus 244 ~---~~~~l~~~l~~~k~~LlvlDdv~ 267 (1355)
+ .+..+...+.+.+--|||+|.+-
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHhhccccceEEEEecchH
Confidence 2 23333444444455689999874
No 257
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.54 E-value=0.058 Score=58.11 Aligned_cols=45 Identities=22% Similarity=0.426 Sum_probs=35.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHH
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTI 224 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 224 (1355)
..++.|+|.+|+|||++|.+++...... -..++|++.. .++...+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHHH
Confidence 4799999999999999999998876432 4678899887 5555443
No 258
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.54 E-value=0.033 Score=57.31 Aligned_cols=36 Identities=28% Similarity=0.449 Sum_probs=29.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEE
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV 213 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 213 (1355)
...+|.+.|+.|+||||+|+.++..... .+..++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~--~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKL--KYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH--cCCcEEEE
Confidence 4469999999999999999999998753 35555555
No 259
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.53 E-value=0.049 Score=61.02 Aligned_cols=92 Identities=16% Similarity=0.207 Sum_probs=58.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhh----cCCCEEEEEEeCCCCCHHHHHHHHHHhhcccccc---------CCCH
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIED----KLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQ---------NENV 242 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---------~~~~ 242 (1355)
..+++-|+|++|+|||+++.+++-..... ..=..++||+.-..|+++.+.+ +++.++.+... ..+.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCCH
Confidence 34688899999999999998877543211 1124789999999888887754 56666543221 0122
Q ss_pred HH---HHHHHHHHHhcCCeEEEEEeCccc
Q 000679 243 FQ---RAEKLRQRLKNVKRVLVILDNIWK 268 (1355)
Q Consensus 243 ~~---~~~~l~~~l~~~k~~LlvlDdv~~ 268 (1355)
++ .+..+...+.+++--|+|+|.+-.
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSisa 202 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSIMA 202 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcchH
Confidence 22 233344444444455888888743
No 260
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.047 Score=58.28 Aligned_cols=83 Identities=23% Similarity=0.325 Sum_probs=47.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhh--cCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHh
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIED--KLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK 254 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 254 (1355)
.++|.++|++|.|||+|.+++++...++ ..|....-+.++. ..++.....+-+ +-.....+++.+-+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsESg------KlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSESG------KLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhhhh------hHHHHHHHHHHHHHh
Confidence 4889999999999999999999987653 4454444444432 223333322221 112223334444444
Q ss_pred cCCe-EEEEEeCcccc
Q 000679 255 NVKR-VLVILDNIWKL 269 (1355)
Q Consensus 255 ~~k~-~LlvlDdv~~~ 269 (1355)
+.+. +.+.+|.|...
T Consensus 247 d~~~lVfvLIDEVESL 262 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVESL 262 (423)
T ss_pred CCCcEEEEEeHHHHHH
Confidence 3233 45556888654
No 261
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.51 E-value=0.17 Score=57.07 Aligned_cols=165 Identities=15% Similarity=0.106 Sum_probs=78.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcC-CC------E--EEEEEeCCCCCHHHHHHHHH-HhhccccccCCCHHHHH
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKL-FD------K--VVFVEVTQTPDLQTIQNKLS-SDLELEFKQNENVFQRA 246 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~------~--~~wv~~s~~~~~~~~~~~i~-~~l~~~~~~~~~~~~~~ 246 (1355)
...+.++|+.|+||||+|..++...--... -+ | +.++..+..+|+..+...=. ..-+ .. ......+.+
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g-~~-~~~I~id~i 98 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENG-RK-LLQIKIDAV 98 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccccccc-cc-CCCcCHHHH
Confidence 456889999999999999999987532110 00 0 00111111111110000000 0000 00 000123334
Q ss_pred HHHHHHHhc----CCeEEEEEeCccccc--cccccCCCCCCccccCCCCCCCcEEEEEeCchh-hhhhcCCCcceEecCC
Q 000679 247 EKLRQRLKN----VKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRD-VLCNDMNSQKFFLIEV 319 (1355)
Q Consensus 247 ~~l~~~l~~----~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~-v~~~~~~~~~~~~l~~ 319 (1355)
+.+.+.+.. +++-.+|+|++...+ ..+.+...+.. ...+..+|++|.+.. +..........+.+.+
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEe-------p~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~ 171 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEE-------PPPQVVFLLVSHAADKVLPTIKSRCRKMVLPA 171 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHh-------CcCCCEEEEEeCChHhChHHHHHHhhhhcCCC
Confidence 444444431 234455668776552 22222222222 223466777777654 3322233356888999
Q ss_pred CCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHH
Q 000679 320 LSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVA 359 (1355)
Q Consensus 320 L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 359 (1355)
++.+++.+.+.+. +. ... . ..+..++|-|+.
T Consensus 172 ~~~~~~~~~L~~~-~~---~~~--~---~~l~~~~g~p~~ 202 (325)
T PRK08699 172 PSHEEALAYLRER-GV---AEP--E---ERLAFHSGAPLF 202 (325)
T ss_pred CCHHHHHHHHHhc-CC---CcH--H---HHHHHhCCChhh
Confidence 9999998888654 11 111 1 123568899964
No 262
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.28 Score=50.29 Aligned_cols=156 Identities=15% Similarity=0.197 Sum_probs=83.7
Q ss_pred ccchhHHHHHHHHHHhh-------------cCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHH
Q 000679 157 QFDSRMKIFQNIMEVLK-------------DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQT 223 (1355)
Q Consensus 157 ~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 223 (1355)
.+-|-++.+++|.+.+. -.+.+-+.++|++|.|||-||++||++- .+.|+.||.. +-
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-------~c~firvsgs---el 217 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGS---EL 217 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-------ceEEEEechH---HH
Confidence 34456777777766554 1356778899999999999999999864 3456777653 22
Q ss_pred HHHHHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCccccccc--cc-------cCCCCCCccccCC--CCCCC
Q 000679 224 IQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNL--DA-------VGIPFGDVKKERN--DDRSR 292 (1355)
Q Consensus 224 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~--~~-------~~~~~~~~~~~~~--~~~~~ 292 (1355)
+++-|-+ ....+.++.-.-+..-+-.|..|.+++...- +. +....-.++.++. ...+.
T Consensus 218 vqk~ige-----------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkn 286 (404)
T KOG0728|consen 218 VQKYIGE-----------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKN 286 (404)
T ss_pred HHHHhhh-----------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccc
Confidence 2222211 1112233333333346778888888765110 00 0000000111111 13456
Q ss_pred cEEEEEeCchhhh-hhcCCC---cceEecCCCCHHHHHHHHHHHh
Q 000679 293 CTVLLTSRNRDVL-CNDMNS---QKFFLIEVLSYEEAWCLFEKIV 333 (1355)
Q Consensus 293 s~ilvTtR~~~v~-~~~~~~---~~~~~l~~L~~~~~~~lf~~~~ 333 (1355)
-|||..|-.-++. .....+ ..-++..+-+++.-.++++-+.
T Consensus 287 ikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 287 IKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred eEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 6787777554443 111222 3467777777777777776555
No 263
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.50 E-value=0.081 Score=53.65 Aligned_cols=40 Identities=38% Similarity=0.591 Sum_probs=31.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCC
Q 000679 179 MIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD 220 (1355)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 220 (1355)
++.|+|.+|+||||+|..+...... .-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCcchH
Confidence 4689999999999999999988743 245677887765543
No 264
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.48 E-value=0.58 Score=53.78 Aligned_cols=43 Identities=26% Similarity=0.492 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhc---CCceEEEEEecCCCcHHHHHHHHHHHHhhh
Q 000679 162 MKIFQNIMEVLKD---TNVGMIGVYGVNGVGKTTLVKQIAMQVIED 204 (1355)
Q Consensus 162 ~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 204 (1355)
+...+.+.+.+.+ ....+|+|.|.=|+||||+.+.+.+.....
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3445666666663 467899999999999999999999988644
No 265
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.46 E-value=0.12 Score=55.75 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=25.8
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHHhh
Q 000679 175 TNVGMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1355)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1355)
....+|+|.|+.|+|||||++.+....+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 45789999999999999999999988754
No 266
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.46 E-value=0.026 Score=73.01 Aligned_cols=105 Identities=16% Similarity=0.258 Sum_probs=60.6
Q ss_pred ccchhHHHHHHHHHHhhcC---------CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHH
Q 000679 157 QFDSRMKIFQNIMEVLKDT---------NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNK 227 (1355)
Q Consensus 157 ~~~gr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 227 (1355)
.++|.+..++.+.+.+... ...++.++|+.|+|||++|+.++...... -...+.++.+...+...+ .
T Consensus 566 ~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~~~~~~~-~- 641 (852)
T TIGR03346 566 RVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD--EDAMVRIDMSEYMEKHSV-A- 641 (852)
T ss_pred ccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhhcccchH-H-
Confidence 4779999999998888621 13568899999999999999999875311 233445555543221111 1
Q ss_pred HHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCcccc
Q 000679 228 LSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL 269 (1355)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 269 (1355)
+-++.+. +..... ....+...++.....+|+||++...
T Consensus 642 --~l~g~~~-g~~g~~-~~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 642 --RLIGAPP-GYVGYE-EGGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred --HhcCCCC-CccCcc-cccHHHHHHHcCCCcEEEEeccccC
Confidence 1112111 100000 0123444444434458999999765
No 267
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.44 E-value=0.82 Score=53.17 Aligned_cols=38 Identities=29% Similarity=0.337 Sum_probs=28.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEe
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEV 215 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 215 (1355)
...+|.++|+.|+||||+|..++...+.+ .+ .++.|+.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~-G~-kV~lV~~ 136 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK-GF-KPCLVCA 136 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC-CC-CEEEEcC
Confidence 35799999999999999999998876533 23 3444443
No 268
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.40 E-value=0.029 Score=66.44 Aligned_cols=74 Identities=23% Similarity=0.319 Sum_probs=54.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHH-h
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRL-K 254 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~ 254 (1355)
..++.-++|++|+||||||.-++++.- | .++-|++|+..+...+-..|...+.... .+ .
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s---------------~l~a 384 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHS---------------VLDA 384 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhcc---------------cccc
Confidence 357899999999999999999998752 3 4667899998888888777766553221 12 1
Q ss_pred cCCeEEEEEeCcccc
Q 000679 255 NVKRVLVILDNIWKL 269 (1355)
Q Consensus 255 ~~k~~LlvlDdv~~~ 269 (1355)
.+++.-||+|.++..
T Consensus 385 dsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGA 399 (877)
T ss_pred CCCcceEEEecccCC
Confidence 137788889988765
No 269
>PRK06526 transposase; Provisional
Probab=95.38 E-value=0.035 Score=60.23 Aligned_cols=74 Identities=18% Similarity=0.224 Sum_probs=43.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcC
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNV 256 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (1355)
..-+.++|++|+|||+||..+.+....+ .+. +.|+ +..++...+..... . .... .....+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~-g~~-v~f~------t~~~l~~~l~~~~~----~-~~~~----~~l~~l~-- 158 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA-GHR-VLFA------TAAQWVARLAAAHH----A-GRLQ----AELVKLG-- 158 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC-CCc-hhhh------hHHHHHHHHHHHHh----c-CcHH----HHHHHhc--
Confidence 3568999999999999999999876532 232 3333 33445555443211 1 1111 1122232
Q ss_pred CeEEEEEeCcccc
Q 000679 257 KRVLVILDNIWKL 269 (1355)
Q Consensus 257 k~~LlvlDdv~~~ 269 (1355)
+.-+||+||+...
T Consensus 159 ~~dlLIIDD~g~~ 171 (254)
T PRK06526 159 RYPLLIVDEVGYI 171 (254)
T ss_pred cCCEEEEcccccC
Confidence 4568999999654
No 270
>PRK06921 hypothetical protein; Provisional
Probab=95.38 E-value=0.12 Score=56.79 Aligned_cols=71 Identities=24% Similarity=0.330 Sum_probs=44.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhc
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKN 255 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 255 (1355)
....+.++|..|+|||.||.++++....+. -..++|++. .+++..+...+ .......+.+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~------~~l~~~l~~~~-----------~~~~~~~~~~~- 176 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPF------VEGFGDLKDDF-----------DLLEAKLNRMK- 176 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEH------HHHHHHHHHHH-----------HHHHHHHHHhc-
Confidence 456899999999999999999999875331 244567664 23333332221 01112233333
Q ss_pred CCeEEEEEeCc
Q 000679 256 VKRVLVILDNI 266 (1355)
Q Consensus 256 ~k~~LlvlDdv 266 (1355)
+--||||||+
T Consensus 177 -~~dlLiIDDl 186 (266)
T PRK06921 177 -KVEVLFIDDL 186 (266)
T ss_pred -CCCEEEEecc
Confidence 4569999999
No 271
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.33 E-value=0.074 Score=52.79 Aligned_cols=25 Identities=40% Similarity=0.444 Sum_probs=22.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHH
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
...+.|.|++|+|||||++++..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3678999999999999999999876
No 272
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=1.8 Score=49.43 Aligned_cols=160 Identities=15% Similarity=0.163 Sum_probs=81.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCC
Q 000679 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVK 257 (1355)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 257 (1355)
|=-.++||+|.|||+++.++++... ||..- ..++...+ ..+ +++|...- ..
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----ydIyd-LeLt~v~~---------------------n~d-Lr~LL~~t--~~ 286 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YDIYD-LELTEVKL---------------------DSD-LRHLLLAT--PN 286 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----CceEE-eeeccccC---------------------cHH-HHHHHHhC--CC
Confidence 4567999999999999999999874 55432 22221111 111 22222221 36
Q ss_pred eEEEEEeCccccccc-----------cc--cCCCCCCccccCC--CCCC-CcEE-EEEeCchhh---hhhcCCC-cceEe
Q 000679 258 RVLVILDNIWKLLNL-----------DA--VGIPFGDVKKERN--DDRS-RCTV-LLTSRNRDV---LCNDMNS-QKFFL 316 (1355)
Q Consensus 258 ~~LlvlDdv~~~~~~-----------~~--~~~~~~~~~~~~~--~~~~-~s~i-lvTtR~~~v---~~~~~~~-~~~~~ 316 (1355)
+-+||+.|++-.-+. +. -...|..++.... |... +=|| +.||-..+- |....+. ...+.
T Consensus 287 kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~ 366 (457)
T KOG0743|consen 287 KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIY 366 (457)
T ss_pred CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEE
Confidence 777888888654211 10 0011222222211 1222 2355 556655532 2111111 33567
Q ss_pred cCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHH-HHHHHHhcC
Q 000679 317 IEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIK-TIANALKNK 370 (1355)
Q Consensus 317 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~-~~~~~l~~~ 370 (1355)
|.-=+.+....||.+..+...++.- +.+|.+...|.-+.=. +.+.++..+
T Consensus 367 mgyCtf~~fK~La~nYL~~~~~h~L----~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 367 MGYCTFEAFKTLASNYLGIEEDHRL----FDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred cCCCCHHHHHHHHHHhcCCCCCcch----hHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 8888888889999988866443333 3444444444433323 333444444
No 273
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.22 E-value=0.041 Score=71.03 Aligned_cols=105 Identities=15% Similarity=0.221 Sum_probs=59.3
Q ss_pred ccchhHHHHHHHHHHhhc-------C--CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHH
Q 000679 157 QFDSRMKIFQNIMEVLKD-------T--NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNK 227 (1355)
Q Consensus 157 ~~~gr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 227 (1355)
.++|-+..++.+.+.+.. . ....+.++|+.|+|||+||+.+++..-.. -...+-++.++..+...+.+
T Consensus 510 ~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~~~~- 586 (821)
T CHL00095 510 RIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHTVSK- 586 (821)
T ss_pred cCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhccccccHHH-
Confidence 477889889888887751 1 12456789999999999999999875211 12344455544322221111
Q ss_pred HHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCcccc
Q 000679 228 LSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL 269 (1355)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 269 (1355)
-++.+ ...... +....+.+.++....-++++|+++..
T Consensus 587 ---l~g~~-~gyvg~-~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 587 ---LIGSP-PGYVGY-NEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred ---hcCCC-CcccCc-CccchHHHHHHhCCCeEEEECChhhC
Confidence 11211 110000 01123445555434468999999865
No 274
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.21 E-value=0.078 Score=60.68 Aligned_cols=83 Identities=16% Similarity=0.215 Sum_probs=45.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCC--HHHHHHHHHHhhccccccCCCHHHHHHHHHHHHh
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD--LQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK 254 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 254 (1355)
..++.++|++|+||||+|.+++........+ .+..++. +.+. ..+.++..++.++.+... ......+.+.+.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~-Dt~R~aA~eQLk~yAe~lgvp~~~----~~~~~~l~~~l~ 296 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTT-DNYRIAAIEQLKRYADTMGMPFYP----VKDIKKFKETLA 296 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecc-cchhhhHHHHHHHHHHhcCCCeee----hHHHHHHHHHHH
Confidence 4689999999999999999999765322222 2333332 2222 233344444555543322 111234444444
Q ss_pred cCCeEEEEEeC
Q 000679 255 NVKRVLVILDN 265 (1355)
Q Consensus 255 ~~k~~LlvlDd 265 (1355)
..+.-++|+|-
T Consensus 297 ~~~~D~VLIDT 307 (432)
T PRK12724 297 RDGSELILIDT 307 (432)
T ss_pred hCCCCEEEEeC
Confidence 32334588884
No 275
>PRK04296 thymidine kinase; Provisional
Probab=95.19 E-value=0.021 Score=59.31 Aligned_cols=111 Identities=20% Similarity=0.116 Sum_probs=61.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhcccccc--CCCHHHHHHHHHHHHhc
Q 000679 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQ--NENVFQRAEKLRQRLKN 255 (1355)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~ 255 (1355)
.++.|+|+.|.||||+|...+.+.... -..++.+. ..++.......+++.++..... .....+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 477899999999999999999887532 23344342 1112222233455555533221 1223334444443 33
Q ss_pred CCeEEEEEeCcccc--ccccccCCCCCCccccCCCCCCCcEEEEEeCchh
Q 000679 256 VKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRD 303 (1355)
Q Consensus 256 ~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~ 303 (1355)
++.-+||+|.+.-. ++..++...+ ...|..|++|.++..
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l---------~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL---------DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH---------HHcCCeEEEEecCcc
Confidence 34458999998432 1122221111 346788999999854
No 276
>PHA02244 ATPase-like protein
Probab=95.19 E-value=0.06 Score=60.29 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=25.5
Q ss_pred HHHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHH
Q 000679 166 QNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 166 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
..+..++..+ .-|.++|+.|+|||++|+++++..
T Consensus 110 ~ri~r~l~~~--~PVLL~GppGtGKTtLA~aLA~~l 143 (383)
T PHA02244 110 ADIAKIVNAN--IPVFLKGGAGSGKNHIAEQIAEAL 143 (383)
T ss_pred HHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHh
Confidence 3444454433 356789999999999999999875
No 277
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.18 E-value=0.08 Score=59.74 Aligned_cols=91 Identities=14% Similarity=0.163 Sum_probs=57.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhh----cCCCEEEEEEeCCCCCHHHHHHHHHHhhcccccc---------CCCH
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIED----KLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQ---------NENV 242 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---------~~~~ 242 (1355)
...++-|+|.+|+|||+|+.+++-..... ..-..++||+....|+++++.+ +++.++.+... ..+.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~ 203 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTY 203 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCH
Confidence 34678899999999999999886543211 1125789999999999888754 56666543221 1222
Q ss_pred HHH---HHHHHHHHhcCCeEEEEEeCcc
Q 000679 243 FQR---AEKLRQRLKNVKRVLVILDNIW 267 (1355)
Q Consensus 243 ~~~---~~~l~~~l~~~k~~LlvlDdv~ 267 (1355)
++. +..+...+.+.+--|||+|.+-
T Consensus 204 e~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 204 EHQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 222 2333334444345578888874
No 278
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.15 E-value=0.031 Score=70.20 Aligned_cols=101 Identities=20% Similarity=0.270 Sum_probs=58.0
Q ss_pred cchhHHHHHHHHHHhhc---------CCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHH
Q 000679 158 FDSRMKIFQNIMEVLKD---------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKL 228 (1355)
Q Consensus 158 ~~gr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 228 (1355)
++|-++.++.+.+.+.. .....+.++|+.|+|||++|+.++.... . ..+.++.++..+...+ ..+
T Consensus 460 ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~--~---~~i~id~se~~~~~~~-~~L 533 (758)
T PRK11034 460 VFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG--I---ELLRFDMSEYMERHTV-SRL 533 (758)
T ss_pred EeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC--C---CcEEeechhhcccccH-HHH
Confidence 67888888888887761 1235788999999999999999988762 1 2334444433221111 111
Q ss_pred HHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCcccc
Q 000679 229 SSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL 269 (1355)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 269 (1355)
++.+ ..... .+....+.+.+......+++||+++..
T Consensus 534 ---iG~~-~gyvg-~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 534 ---IGAP-PGYVG-FDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred ---cCCC-CCccc-ccccchHHHHHHhCCCcEEEeccHhhh
Confidence 2211 11000 011122334444435579999999876
No 279
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.13 E-value=0.11 Score=57.77 Aligned_cols=86 Identities=19% Similarity=0.247 Sum_probs=55.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhcccccc-----CCCHHHHHHHHHH
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQ-----NENVFQRAEKLRQ 251 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 251 (1355)
.+++-|+|+.|+||||||.++....... -..++||+....++... +++++.+.+. +...++..+.+.+
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHHH
Confidence 4799999999999999999998876432 46688999888777643 3444443332 2445555666666
Q ss_pred HHhcCCeEEEEEeCcccc
Q 000679 252 RLKNVKRVLVILDNIWKL 269 (1355)
Q Consensus 252 ~l~~~k~~LlvlDdv~~~ 269 (1355)
.++.+.--++|+|.|-..
T Consensus 126 lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 126 LIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHTTSESEEEEE-CTT-
T ss_pred HhhcccccEEEEecCccc
Confidence 666666668999998654
No 280
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.10 E-value=0.02 Score=59.94 Aligned_cols=108 Identities=13% Similarity=0.210 Sum_probs=59.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHH---HHHHhhccccccCCCHHHHHHHHHHHHh
Q 000679 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQN---KLSSDLELEFKQNENVFQRAEKLRQRLK 254 (1355)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~---~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 254 (1355)
++|.|+|+.|.||||++..+...... .....++. +.+... .... .+..+-.. ..+.....+.++..+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~--~~~~~i~t-~e~~~E--~~~~~~~~~i~q~~v----g~~~~~~~~~i~~aLr 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINK--NKTHHILT-IEDPIE--FVHESKRSLINQREV----GLDTLSFENALKAALR 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhh--cCCcEEEE-EcCCcc--ccccCccceeeeccc----CCCccCHHHHHHHHhc
Confidence 57899999999999999988876532 23333333 222111 1100 01111000 0112233445666666
Q ss_pred cCCeEEEEEeCccccccccccCCCCCCccccCCCCCCCcEEEEEeCchhhh
Q 000679 255 NVKRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVL 305 (1355)
Q Consensus 255 ~~k~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~ 305 (1355)
. ..=.+++|++.+.+.+...... ...|..++.|+....+.
T Consensus 73 ~-~pd~ii~gEird~e~~~~~l~~----------a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 73 Q-DPDVILVGEMRDLETIRLALTA----------AETGHLVMSTLHTNSAA 112 (198)
T ss_pred C-CcCEEEEcCCCCHHHHHHHHHH----------HHcCCEEEEEecCCcHH
Confidence 5 5668999999877654443221 33455688888766543
No 281
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.09 E-value=0.15 Score=57.41 Aligned_cols=90 Identities=19% Similarity=0.265 Sum_probs=54.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCC-CHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHh
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP-DLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK 254 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 254 (1355)
+.++++++|+.|+||||++..++.....+. ..+.+|+..... ...+-++..++.++.+.....+..+....+ +.+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al-~~l~ 281 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAV-QYMT 281 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHH-HHHH
Confidence 457999999999999999999988764332 356667664332 234455566666665443333444443333 3333
Q ss_pred c-CCeEEEEEeCccc
Q 000679 255 N-VKRVLVILDNIWK 268 (1355)
Q Consensus 255 ~-~k~~LlvlDdv~~ 268 (1355)
. +..-++++|-.-.
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 1 2445778887643
No 282
>PRK10867 signal recognition particle protein; Provisional
Probab=95.05 E-value=0.22 Score=58.22 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=24.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhh
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1355)
...+|.++|++|+||||.|..++.....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~ 126 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKK 126 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3679999999999999999999887653
No 283
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.00 E-value=0.031 Score=53.53 Aligned_cols=30 Identities=43% Similarity=0.493 Sum_probs=25.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhhcCCC
Q 000679 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFD 208 (1355)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 208 (1355)
-.|+|.|++|+||||+++.+.+..+.+. |.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g-~k 35 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKG-YK 35 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcC-ce
Confidence 4689999999999999999999887543 53
No 284
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.97 E-value=0.2 Score=57.63 Aligned_cols=89 Identities=19% Similarity=0.181 Sum_probs=53.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhc--CCCEEEEEEeCCCCC--HHHHHHHHHHhhccccccCCCHHHHHHHHHH
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDK--LFDKVVFVEVTQTPD--LQTIQNKLSSDLELEFKQNENVFQRAEKLRQ 251 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 251 (1355)
..++|.++|+.|+||||.+..++....... +=..+..|++.. +. ..+-++..++.++.+........+....+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt-~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~- 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDN-YRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEIT- 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccC-ccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHH-
Confidence 357999999999999999999988765321 123455555543 33 233366666666665444333333333332
Q ss_pred HHhcCCeEEEEEeCccc
Q 000679 252 RLKNVKRVLVILDNIWK 268 (1355)
Q Consensus 252 ~l~~~k~~LlvlDdv~~ 268 (1355)
.+. +.-++++|.+-.
T Consensus 251 ~~~--~~DlVLIDTaGr 265 (388)
T PRK12723 251 QSK--DFDLVLVDTIGK 265 (388)
T ss_pred HhC--CCCEEEEcCCCC
Confidence 222 556888888743
No 285
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.96 E-value=0.16 Score=54.97 Aligned_cols=49 Identities=12% Similarity=0.285 Sum_probs=35.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHH
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKL 228 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 228 (1355)
...++.|.|.+|+|||++|.++...... .-..++||+... ++.++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~--~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ--MGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH--cCCcEEEEEeeC--CHHHHHHHH
Confidence 4579999999999999999998766432 246788888765 445555543
No 286
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.95 E-value=0.093 Score=59.06 Aligned_cols=58 Identities=16% Similarity=0.200 Sum_probs=40.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhc----CCCEEEEEEeCCCCCHHHHHHHHHHhhcc
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDK----LFDKVVFVEVTQTPDLQTIQNKLSSDLEL 234 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 234 (1355)
...++.|+|.+|+||||+|..++....... .-..++||+....++...+ .++++.++.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 357899999999999999999876432111 1236799998887777764 345555543
No 287
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.93 E-value=0.026 Score=55.26 Aligned_cols=36 Identities=28% Similarity=0.385 Sum_probs=27.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEE
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVE 214 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 214 (1355)
..+|-|.|.+|+||||||+++........ ..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g--~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARG--IKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--S-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcC--CcEEEec
Confidence 36899999999999999999999986442 3444443
No 288
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.93 E-value=0.013 Score=61.00 Aligned_cols=81 Identities=23% Similarity=0.402 Sum_probs=42.1
Q ss_pred cCCCcceEEEecCCCccccCcccccccCCcEEEecCC--CCCC--ccccccccccceeecccCCCCc---cchhhhcccc
Q 000679 557 EGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGC--QVGD--VAIVGQLKKLEILSFRNSDIQQ---LPREIGQLVQ 629 (1355)
Q Consensus 557 ~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~--~i~~--p~~i~~L~~L~~L~L~~~~l~~---lP~~i~~L~~ 629 (1355)
..+..|..|++.+..++.+- .+..|++|++|.++.| .+.. +...-++.+|++|++++|+++- ++ .+.++.+
T Consensus 40 d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcc
Confidence 34445555555555544432 2445667777777776 3333 2333344666666666665442 21 1344555
Q ss_pred CcEEeccCcc
Q 000679 630 LRLLDLRNCR 639 (1355)
Q Consensus 630 L~~L~l~~~~ 639 (1355)
|..|++..|.
T Consensus 118 L~~Ldl~n~~ 127 (260)
T KOG2739|consen 118 LKSLDLFNCS 127 (260)
T ss_pred hhhhhcccCC
Confidence 5556655553
No 289
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.93 E-value=0.045 Score=60.72 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=25.4
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHHhh
Q 000679 175 TNVGMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1355)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1355)
..+..++|||++|.|||.+|+.++++...
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~ 174 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGI 174 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCC
Confidence 34678999999999999999999999753
No 290
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.15 Score=62.20 Aligned_cols=139 Identities=18% Similarity=0.221 Sum_probs=76.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhc
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKN 255 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 255 (1355)
..+.+-++|++|.|||.||+++++... .+|-.+. .. ++ ....- -.....+..+.+.-++
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~--~~fi~v~-----~~----~l----~sk~v------Gesek~ir~~F~~A~~ 333 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESR--SRFISVK-----GS----EL----LSKWV------GESEKNIRELFEKARK 333 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCC--CeEEEee-----CH----HH----hcccc------chHHHHHHHHHHHHHc
Confidence 456889999999999999999999654 2342222 11 11 11110 1122334444444444
Q ss_pred CCeEEEEEeCccccccccccCC------CCCCccccCCC--CCCCcEEEEEeCchhhh-hhcC---CCcceEecCCCCHH
Q 000679 256 VKRVLVILDNIWKLLNLDAVGI------PFGDVKKERND--DRSRCTVLLTSRNRDVL-CNDM---NSQKFFLIEVLSYE 323 (1355)
Q Consensus 256 ~k~~LlvlDdv~~~~~~~~~~~------~~~~~~~~~~~--~~~~s~ilvTtR~~~v~-~~~~---~~~~~~~l~~L~~~ 323 (1355)
..++.|.+|+++....+..-.. ....++....+ ...+..||-||-..... .... .-...+.+..-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 5889999999987644332110 11111111111 22333344445443222 1011 22458889999999
Q ss_pred HHHHHHHHHhCC
Q 000679 324 EAWCLFEKIVGD 335 (1355)
Q Consensus 324 ~~~~lf~~~~~~ 335 (1355)
+..+.|+.+...
T Consensus 414 ~r~~i~~~~~~~ 425 (494)
T COG0464 414 ERLEIFKIHLRD 425 (494)
T ss_pred HHHHHHHHHhcc
Confidence 999999999864
No 291
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.87 E-value=0.09 Score=59.46 Aligned_cols=58 Identities=17% Similarity=0.245 Sum_probs=42.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhh----cCCCEEEEEEeCCCCCHHHHHHHHHHhhccc
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIED----KLFDKVVFVEVTQTPDLQTIQNKLSSDLELE 235 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 235 (1355)
..++-|+|.+|+|||++|..++-..... ..-..++||+....|+++++. +|++.++.+
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~ 184 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLN 184 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCC
Confidence 4688899999999999999887543211 111369999999999887764 556666543
No 292
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.87 E-value=0.0095 Score=36.63 Aligned_cols=21 Identities=19% Similarity=0.525 Sum_probs=12.7
Q ss_pred ccceeecccCCCCccchhhhc
Q 000679 606 KLEILSFRNSDIQQLPREIGQ 626 (1355)
Q Consensus 606 ~L~~L~L~~~~l~~lP~~i~~ 626 (1355)
+|++||+++|.++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666665543
No 293
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.85 E-value=0.35 Score=60.50 Aligned_cols=156 Identities=17% Similarity=0.186 Sum_probs=78.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCC
Q 000679 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVK 257 (1355)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 257 (1355)
+-|.++|++|+|||++|+.++..... .| +.++.++ +..... + . .......+.+......
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~--~f---~~is~~~------~~~~~~---g------~-~~~~~~~~f~~a~~~~ 244 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKV--PF---FTISGSD------FVEMFV---G------V-GASRVRDMFEQAKKAA 244 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCC--CE---EEEehHH------hHHhhh---c------c-cHHHHHHHHHHHHhcC
Confidence 45899999999999999999887642 22 2222211 111000 0 0 1112222333333347
Q ss_pred eEEEEEeCccccccccc--cC-------CCCCCccccCC--CCCCCcEEEEEeCchhhhhhc-C---CCcceEecCCCCH
Q 000679 258 RVLVILDNIWKLLNLDA--VG-------IPFGDVKKERN--DDRSRCTVLLTSRNRDVLCND-M---NSQKFFLIEVLSY 322 (1355)
Q Consensus 258 ~~LlvlDdv~~~~~~~~--~~-------~~~~~~~~~~~--~~~~~s~ilvTtR~~~v~~~~-~---~~~~~~~l~~L~~ 322 (1355)
+++|++|+++....-.. .. ..+..++.... ....+.-||.||...+..... . .....+.+...+.
T Consensus 245 P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~ 324 (644)
T PRK10733 245 PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV 324 (644)
T ss_pred CcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCH
Confidence 78999999976411000 00 00000000000 123455566677666433111 1 2246788888898
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCC
Q 000679 323 EEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGL 356 (1355)
Q Consensus 323 ~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~gl 356 (1355)
++-.++++.+.......++.. ...+++.+.|.
T Consensus 325 ~~R~~Il~~~~~~~~l~~~~d--~~~la~~t~G~ 356 (644)
T PRK10733 325 RGREQILKVHMRRVPLAPDID--AAIIARGTPGF 356 (644)
T ss_pred HHHHHHHHHHhhcCCCCCcCC--HHHHHhhCCCC
Confidence 888888888875432222111 23466666553
No 294
>PRK06547 hypothetical protein; Provisional
Probab=94.85 E-value=0.04 Score=55.82 Aligned_cols=34 Identities=29% Similarity=0.316 Sum_probs=27.9
Q ss_pred HHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHH
Q 000679 168 IMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 168 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
+...+......+|+|.|++|+||||+|+.++...
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444456677899999999999999999999874
No 295
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.84 E-value=0.26 Score=57.55 Aligned_cols=89 Identities=19% Similarity=0.181 Sum_probs=48.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCC--HHHHHHHHHHhhcccccc---CCCHHHHHHHHH
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD--LQTIQNKLSSDLELEFKQ---NENVFQRAEKLR 250 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~ 250 (1355)
...++.++|.+|+||||.|..++.....+..+ .++-|+.. .+. ..+-++..+...+.+... ..+..+......
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~D-~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVACD-LYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEecc-ccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 35799999999999999999998876422222 34444433 222 233344445555443222 123334433344
Q ss_pred HHHhcCCeE-EEEEeCcc
Q 000679 251 QRLKNVKRV-LVILDNIW 267 (1355)
Q Consensus 251 ~~l~~~k~~-LlvlDdv~ 267 (1355)
+.... +.| ++|+|-.-
T Consensus 176 ~~~~~-~~~DvVIIDTaG 192 (428)
T TIGR00959 176 EYAKE-NGFDVVIVDTAG 192 (428)
T ss_pred HHHHh-cCCCEEEEeCCC
Confidence 44433 334 67777654
No 296
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.84 E-value=0.14 Score=52.41 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=22.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhh
Q 000679 179 MIGVYGVNGVGKTTLVKQIAMQVIE 203 (1355)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1355)
++.++|++|+||||+++.++.....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999987653
No 297
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=94.82 E-value=0.12 Score=55.48 Aligned_cols=43 Identities=26% Similarity=0.413 Sum_probs=33.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCC
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD 220 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 220 (1355)
...++.|.|.+|+||||+|.+++.....+ =..++|++....++
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCH
Confidence 35789999999999999999998876422 34678887655543
No 298
>PRK14974 cell division protein FtsY; Provisional
Probab=94.82 E-value=0.29 Score=55.26 Aligned_cols=90 Identities=21% Similarity=0.196 Sum_probs=49.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCC--HHHHHHHHHHhhccccccC---CCHHHHHHHHH
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD--LQTIQNKLSSDLELEFKQN---ENVFQRAEKLR 250 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~ 250 (1355)
+..+|.++|+.|+||||++..++...+. ..+ .++.+. .+.+. ..+-++..+..++.+.... .+....+....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~-~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKK-NGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 4679999999999999999999887653 234 333343 23332 2233455666666543221 22222222222
Q ss_pred HHHhcCCeEEEEEeCccc
Q 000679 251 QRLKNVKRVLVILDNIWK 268 (1355)
Q Consensus 251 ~~l~~~k~~LlvlDdv~~ 268 (1355)
+.......-++++|-+-.
T Consensus 216 ~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHhCCCCEEEEECCCc
Confidence 222221233888888744
No 299
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.81 E-value=0.12 Score=58.74 Aligned_cols=57 Identities=25% Similarity=0.362 Sum_probs=41.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcC----CCEEEEEEeCCCCCHHHHHHHHHHhhc
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKL----FDKVVFVEVTQTPDLQTIQNKLSSDLE 233 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (1355)
...++-|+|++|+|||++|.+++........ =..++||+....+++..+.+ +++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 3578899999999999999999876532211 14799999988888776654 444443
No 300
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=94.81 E-value=0.033 Score=65.44 Aligned_cols=46 Identities=15% Similarity=0.316 Sum_probs=40.5
Q ss_pred ccchhHHHHHHHHHHhh------cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 000679 157 QFDSRMKIFQNIMEVLK------DTNVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1355)
Q Consensus 157 ~~~gr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1355)
+++|-++.+++|++.|. +...+++.++|+.|+||||||+.+++-.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 57899999999999983 45668999999999999999999999764
No 301
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.80 E-value=0.18 Score=54.31 Aligned_cols=93 Identities=24% Similarity=0.209 Sum_probs=60.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhh--hcCCCEEEEEEeCCCCC-HHHHHHHHHHhhcccc------ccCCCHHH---
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIE--DKLFDKVVFVEVTQTPD-LQTIQNKLSSDLELEF------KQNENVFQ--- 244 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~------~~~~~~~~--- 244 (1355)
-..++|.|-.|+|||+|+..+.+.... +.+-+.++++-+++... +.++.+.+...-.... ...+....
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 357899999999999999998877531 22357889999988764 5667766655321110 01111111
Q ss_pred ---HHHHHHHHHhc--CCeEEEEEeCcccc
Q 000679 245 ---RAEKLRQRLKN--VKRVLVILDNIWKL 269 (1355)
Q Consensus 245 ---~~~~l~~~l~~--~k~~LlvlDdv~~~ 269 (1355)
..-.+.+++++ ++++|+++||+...
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 12235556553 59999999998654
No 302
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.75 E-value=0.08 Score=50.85 Aligned_cols=45 Identities=24% Similarity=0.422 Sum_probs=34.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhcccc
Q 000679 179 MIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEF 236 (1355)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 236 (1355)
+|.|-|++|.||||+|+.++.+.--. .| +.-.+++++++..+...
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcCCCH
Confidence 68999999999999999999987422 11 33468888888877654
No 303
>PRK09183 transposase/IS protein; Provisional
Probab=94.75 E-value=0.11 Score=56.81 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHh
Q 000679 178 GMIGVYGVNGVGKTTLVKQIAMQVI 202 (1355)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1355)
..+.|+|+.|+|||+||..+++...
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999988754
No 304
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.16 Score=52.41 Aligned_cols=95 Identities=18% Similarity=0.237 Sum_probs=58.9
Q ss_pred CccccchhHHHHHHHHHHhhc-------------CCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCC
Q 000679 154 AYEQFDSRMKIFQNIMEVLKD-------------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD 220 (1355)
Q Consensus 154 ~~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 220 (1355)
.+.++-|-.+.++++.+...- +..+-|..+|++|.|||-.|++|+|+-. ..| +.|-.
T Consensus 175 ty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd--acf-----irvig--- 244 (435)
T KOG0729|consen 175 TYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD--ACF-----IRVIG--- 244 (435)
T ss_pred ccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC--ceE-----Eeehh---
Confidence 345566888888888876641 2456788999999999999999999753 223 32211
Q ss_pred HHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCcccc
Q 000679 221 LQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL 269 (1355)
Q Consensus 221 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 269 (1355)
.++.+.--+ .....+.++.+.-+..|-++|.+|.++..
T Consensus 245 -----selvqkyvg------egarmvrelf~martkkaciiffdeidai 282 (435)
T KOG0729|consen 245 -----SELVQKYVG------EGARMVRELFEMARTKKACIIFFDEIDAI 282 (435)
T ss_pred -----HHHHHHHhh------hhHHHHHHHHHHhcccceEEEEeeccccc
Confidence 122221111 11223444555555557899999988643
No 305
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.69 E-value=0.14 Score=58.06 Aligned_cols=57 Identities=25% Similarity=0.360 Sum_probs=41.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhc----CCCEEEEEEeCCCCCHHHHHHHHHHhhc
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDK----LFDKVVFVEVTQTPDLQTIQNKLSSDLE 233 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (1355)
...++-|+|.+|+||||++.+++....... .=..++||+....++.+.+. ++++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 357889999999999999999987754211 11379999998888877654 3444444
No 306
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.68 E-value=0.19 Score=52.74 Aligned_cols=87 Identities=29% Similarity=0.425 Sum_probs=55.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCC-CHHHHHHHHHHhhcccc------ccCCCHHHH-----
Q 000679 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP-DLQTIQNKLSSDLELEF------KQNENVFQR----- 245 (1355)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~~----- 245 (1355)
..++|.|.+|+|||+|++.+.+... -+.++++-+++.. .+.++.+++...-..+. ...+.....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 5889999999999999999999873 3556888888764 46666666644311111 011111111
Q ss_pred -HHHHHHHHh-cCCeEEEEEeCccc
Q 000679 246 -AEKLRQRLK-NVKRVLVILDNIWK 268 (1355)
Q Consensus 246 -~~~l~~~l~-~~k~~LlvlDdv~~ 268 (1355)
.-.+.++++ +++++|+++||+..
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dsltr 116 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETHHH
T ss_pred cchhhhHHHhhcCCceeehhhhhHH
Confidence 112333333 37999999999854
No 307
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=0.14 Score=61.21 Aligned_cols=92 Identities=18% Similarity=0.321 Sum_probs=63.1
Q ss_pred ccchhHHHHHHHHHHhh---------cC---CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHH
Q 000679 157 QFDSRMKIFQNIMEVLK---------DT---NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTI 224 (1355)
Q Consensus 157 ~~~gr~~~~~~l~~~L~---------~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 224 (1355)
++-|-++.+.+|.+-+. .. +..=|-++|++|.|||-+|++|+.+.... |++|-.. ++
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~-------FlSVKGP----EL 741 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN-------FLSVKGP----EL 741 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee-------EEeecCH----HH
Confidence 46688888888888664 11 24568899999999999999999986432 4554332 22
Q ss_pred HHHHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCcccc
Q 000679 225 QNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL 269 (1355)
Q Consensus 225 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 269 (1355)
+..... ..++.++++.++-++.++|.|.+|.+++.
T Consensus 742 LNMYVG----------qSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 742 LNMYVG----------QSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred HHHHhc----------chHHHHHHHHHHhhccCCeEEEecccccc
Confidence 221111 13445667777777679999999999875
No 308
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.60 E-value=0.099 Score=57.08 Aligned_cols=123 Identities=15% Similarity=0.152 Sum_probs=67.0
Q ss_pred HHHHHHhh-cCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEE---eCCCCCHHHHHHHHHHhhccccccC--
Q 000679 166 QNIMEVLK-DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVE---VTQTPDLQTIQNKLSSDLELEFKQN-- 239 (1355)
Q Consensus 166 ~~l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---~s~~~~~~~~~~~i~~~l~~~~~~~-- 239 (1355)
+.++..+. +....-++|+|+.|.||||+.+.++..... ..+.+++. +....+.. +++.....-....
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~---~~G~i~~~g~~v~~~d~~~----ei~~~~~~~~q~~~~ 171 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILST---GISQLGLRGKKVGIVDERS----EIAGCVNGVPQHDVG 171 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCC---CCceEEECCEEeecchhHH----HHHHHhccccccccc
Confidence 34444444 344568999999999999999999987642 23334432 11111122 3322221110000
Q ss_pred -----CCHHHHHHHHHHHHhcCCeEEEEEeCccccccccccCCCCCCccccCCCCCCCcEEEEEeCchhhh
Q 000679 240 -----ENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVL 305 (1355)
Q Consensus 240 -----~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~ 305 (1355)
.+.......+...+....+-++++|.+...+.+..+... ...|..||+||.+..+.
T Consensus 172 ~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~----------~~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 172 IRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEA----------LHAGVSIIATAHGRDVE 232 (270)
T ss_pred ccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHH----------HhCCCEEEEEechhHHH
Confidence 011111223444444347889999998766555544322 23577899999987653
No 309
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.57 E-value=0.074 Score=62.35 Aligned_cols=92 Identities=24% Similarity=0.263 Sum_probs=52.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEE-EEEEeCCCCC-HHHHHHHHHHhhccc-cccC----CCHHHHHHHH
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKV-VFVEVTQTPD-LQTIQNKLSSDLELE-FKQN----ENVFQRAEKL 249 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~-~wv~~s~~~~-~~~~~~~i~~~l~~~-~~~~----~~~~~~~~~l 249 (1355)
-....|+|++|+|||||++.+++.... .+-++. +.+-|.+.+. +.++.+.+-..+-.. .+.. .......-.+
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~ 494 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIER 494 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999987643 233443 3455565543 344433331111111 1110 0111222334
Q ss_pred HHHHh-cCCeEEEEEeCcccc
Q 000679 250 RQRLK-NVKRVLVILDNIWKL 269 (1355)
Q Consensus 250 ~~~l~-~~k~~LlvlDdv~~~ 269 (1355)
.+++. .++.+||++|++...
T Consensus 495 Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 495 AKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHcCCCEEEEEeCchHH
Confidence 44443 479999999998654
No 310
>PRK07667 uridine kinase; Provisional
Probab=94.57 E-value=0.054 Score=56.47 Aligned_cols=37 Identities=24% Similarity=0.492 Sum_probs=29.3
Q ss_pred HHHHHHhh--cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 000679 166 QNIMEVLK--DTNVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1355)
Q Consensus 166 ~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1355)
+.+.+.+. .+...+|+|-|.+|+||||+|+.+.....
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44555554 34457999999999999999999998875
No 311
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.56 E-value=1.7 Score=44.78 Aligned_cols=48 Identities=27% Similarity=0.288 Sum_probs=36.8
Q ss_pred ccccchhHHHHHHHHHHhh-------------cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 000679 155 YEQFDSRMKIFQNIMEVLK-------------DTNVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1355)
Q Consensus 155 ~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1355)
+.++-|-+-.++++.+... -+..+-|.++|++|.|||.||++|+++-.
T Consensus 154 y~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~ 214 (408)
T KOG0727|consen 154 YADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT 214 (408)
T ss_pred ccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccc
Confidence 3456677777777776654 13467788999999999999999999864
No 312
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.54 E-value=0.26 Score=53.61 Aligned_cols=89 Identities=22% Similarity=0.268 Sum_probs=54.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHh-hccc-cccCCCHHHHHHHHHHHH
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSD-LELE-FKQNENVFQRAEKLRQRL 253 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~-l~~~-~~~~~~~~~~~~~l~~~l 253 (1355)
..+++=|+|+.|.||||+|.+++-.... .-..++||+.-..+++..+.. ++.. +..- ..+..+.++....+....
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq~--~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQK--PGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhhc--CCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 3478889999999999999998876542 234889999999898876543 3333 2111 111122333222222222
Q ss_pred hcC--CeEEEEEeCcc
Q 000679 254 KNV--KRVLVILDNIW 267 (1355)
Q Consensus 254 ~~~--k~~LlvlDdv~ 267 (1355)
... +--|+|+|.|-
T Consensus 136 ~~~~~~i~LvVVDSva 151 (279)
T COG0468 136 RSGAEKIDLLVVDSVA 151 (279)
T ss_pred HhccCCCCEEEEecCc
Confidence 222 35688898874
No 313
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.54 E-value=2.3 Score=48.44 Aligned_cols=59 Identities=22% Similarity=0.212 Sum_probs=39.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCC--CHHHHHHHHHHhhccccc
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP--DLQTIQNKLSSDLELEFK 237 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~ 237 (1355)
.+.+|-.+|.-|.||||-|..+++..+. ..+ .+-+...+.+ -..+=++.++.+.+.+..
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~--kvllVaaD~~RpAA~eQL~~La~q~~v~~f 159 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKK-KGK--KVLLVAADTYRPAAIEQLKQLAEQVGVPFF 159 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHH-cCC--ceEEEecccCChHHHHHHHHHHHHcCCcee
Confidence 4678999999999999999999998874 222 2222233333 344556677777766543
No 314
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.53 E-value=0.21 Score=53.66 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=32.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHH
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKL 228 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 228 (1355)
..++.|.|..|+||||+|.+++.....+ . ..++|++... +..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~-g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQN-G-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhC-C-CcEEEEeCCC--CHHHHHHHH
Confidence 4699999999999999987766654322 2 4566776333 455666665
No 315
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.52 E-value=0.023 Score=59.27 Aligned_cols=81 Identities=21% Similarity=0.290 Sum_probs=54.6
Q ss_pred hcCCCcceEEEecCCC--cc-ccCcccccccCCcEEEecCCCCCC---ccccccccccceeecccCCCCccch---h-hh
Q 000679 556 FEGMNELRVVHFTRTC--FL-SLPSSLVCLISLRTLSLEGCQVGD---VAIVGQLKKLEILSFRNSDIQQLPR---E-IG 625 (1355)
Q Consensus 556 ~~~l~~Lr~L~L~~~~--~~-~lp~~i~~L~~Lr~L~L~~~~i~~---p~~i~~L~~L~~L~L~~~~l~~lP~---~-i~ 625 (1355)
|..+..|+.|+++.|. +. .++-...++++|++|++++|++.. ...+.++.+|..||+.+|....+-. . +.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 4567788888888883 32 255555667899999999999876 4455678888899999886665421 1 23
Q ss_pred ccccCcEEecc
Q 000679 626 QLVQLRLLDLR 636 (1355)
Q Consensus 626 ~L~~L~~L~l~ 636 (1355)
.+++|.+|+-.
T Consensus 141 ll~~L~~LD~~ 151 (260)
T KOG2739|consen 141 LLPSLKYLDGC 151 (260)
T ss_pred Hhhhhcccccc
Confidence 34555555433
No 316
>PTZ00035 Rad51 protein; Provisional
Probab=94.52 E-value=0.16 Score=57.60 Aligned_cols=92 Identities=15% Similarity=0.213 Sum_probs=55.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhh---h-cCCCEEEEEEeCCCCCHHHHHHHHHHhhcccccc---------CCCH
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIE---D-KLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQ---------NENV 242 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~-~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---------~~~~ 242 (1355)
...++.|+|.+|+||||++..++-.... . ..=..++||+-...++.+++ .++++.++..... ..+.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~~ 195 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYNH 195 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCCH
Confidence 3578999999999999999988765431 0 11245779998877777664 4445555433211 1122
Q ss_pred HHHHH---HHHHHHhcCCeEEEEEeCccc
Q 000679 243 FQRAE---KLRQRLKNVKRVLVILDNIWK 268 (1355)
Q Consensus 243 ~~~~~---~l~~~l~~~k~~LlvlDdv~~ 268 (1355)
++... .+.+.+.+++--|||+|.+..
T Consensus 196 e~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 196 EHQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred HHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 22222 233333444556888888753
No 317
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.45 E-value=0.11 Score=51.60 Aligned_cols=24 Identities=25% Similarity=0.566 Sum_probs=21.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 000679 179 MIGVYGVNGVGKTTLVKQIAMQVI 202 (1355)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1355)
+|.|+|.+|+||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998864
No 318
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.42 E-value=0.11 Score=53.50 Aligned_cols=120 Identities=16% Similarity=0.179 Sum_probs=63.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEE---eCCCCCHHHHHH------HHHHhhccccccC------C
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVE---VTQTPDLQTIQN------KLSSDLELEFKQN------E 240 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---~s~~~~~~~~~~------~i~~~l~~~~~~~------~ 240 (1355)
+..+++|+|..|.|||||++.++.... ...+.+++. +. ..+...... ++++.++...... .
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 346999999999999999999988642 244444442 22 112222211 1344444322110 1
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEEeCcccccc---ccccCCCCCCccccCCCCCCCcEEEEEeCchhhh
Q 000679 241 NVFQRAEKLRQRLKNVKRVLVILDNIWKLLN---LDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVL 305 (1355)
Q Consensus 241 ~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~---~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~ 305 (1355)
.-....-.+.+.+.. .+-++++|+-...-+ .+.+...+.. .. ...+..||++|.+....
T Consensus 100 ~G~~qrl~laral~~-~p~llllDEP~~~LD~~~~~~~~~~l~~----~~-~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 100 GGERQRVLLARALAQ-EPPILLLDEPTSHLDIAHQIELLELLRR----LA-RERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHHhc-CCCEEEEeCCccCCCHHHHHHHHHHHHH----HH-HhcCCEEEEEeCCHHHH
Confidence 112223345555554 778899998654422 2222222211 00 11266788888887654
No 319
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.42 E-value=0.21 Score=58.12 Aligned_cols=92 Identities=21% Similarity=0.362 Sum_probs=60.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCC-HHHHHHHHHHhhcccc------ccCCCHHH-----
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD-LQTIQNKLSSDLELEF------KQNENVFQ----- 244 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~------~~~~~~~~----- 244 (1355)
-..++|.|.+|+|||+|+.++...... .+-+.++|+-+++... +.++.+.+...-.... ...+....
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~~-~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMVG-QHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 358899999999999999999887542 3357888998887764 5666666654311110 01111211
Q ss_pred -HHHHHHHHHhc--CCeEEEEEeCcccc
Q 000679 245 -RAEKLRQRLKN--VKRVLVILDNIWKL 269 (1355)
Q Consensus 245 -~~~~l~~~l~~--~k~~LlvlDdv~~~ 269 (1355)
..-.+.++++. ++++|+++||+..-
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 23345666664 79999999998654
No 320
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.42 E-value=0.14 Score=59.98 Aligned_cols=93 Identities=23% Similarity=0.377 Sum_probs=60.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCC-HHHHHHHHHHhhcccc------ccCCCHHH----
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD-LQTIQNKLSSDLELEF------KQNENVFQ---- 244 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~------~~~~~~~~---- 244 (1355)
.-..++|.|.+|+|||||+.++.+..... +-+.++++-+++... +.++.+.+...-.... ........
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 34589999999999999999999887533 568888888887654 5666666654321110 11112111
Q ss_pred --HHHHHHHHHhc--CCeEEEEEeCcccc
Q 000679 245 --RAEKLRQRLKN--VKRVLVILDNIWKL 269 (1355)
Q Consensus 245 --~~~~l~~~l~~--~k~~LlvlDdv~~~ 269 (1355)
..-.+.+++++ ++++|+++||+..-
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccchHH
Confidence 22345556642 69999999998543
No 321
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.41 E-value=0.17 Score=55.69 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=23.7
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHHh
Q 000679 175 TNVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1355)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1355)
....+|+|.|..|+||||+|+.+..-..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4568999999999999999988876553
No 322
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.40 E-value=0.28 Score=54.00 Aligned_cols=89 Identities=19% Similarity=0.224 Sum_probs=49.3
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCH--HHHHHHHHHhhcccccc---CCCHHHHH-HH
Q 000679 175 TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDL--QTIQNKLSSDLELEFKQ---NENVFQRA-EK 248 (1355)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~~---~~~~~~~~-~~ 248 (1355)
.+.++|.++|++|+||||.+..++...... -..+.+++.. .+.. .+-+...++..+.+... ..+..... ..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 345899999999999999999999877532 2355666544 2322 23333445555433211 12222222 22
Q ss_pred HHHHHhcCCeEEEEEeCcc
Q 000679 249 LRQRLKNVKRVLVILDNIW 267 (1355)
Q Consensus 249 l~~~l~~~k~~LlvlDdv~ 267 (1355)
+.....+ ..-++++|-.-
T Consensus 147 l~~~~~~-~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKAR-NIDVVLIDTAG 164 (272)
T ss_pred HHHHHHC-CCCEEEEeCCC
Confidence 3332232 44578888763
No 323
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.36 E-value=0.018 Score=59.58 Aligned_cols=93 Identities=23% Similarity=0.290 Sum_probs=59.0
Q ss_pred cCCCcceEEEecCCCccc-----cCcccccccCCcEEEecCCCCC---C--c-------cccccccccceeecccCCCC-
Q 000679 557 EGMNELRVVHFTRTCFLS-----LPSSLVCLISLRTLSLEGCQVG---D--V-------AIVGQLKKLEILSFRNSDIQ- 618 (1355)
Q Consensus 557 ~~l~~Lr~L~L~~~~~~~-----lp~~i~~L~~Lr~L~L~~~~i~---~--p-------~~i~~L~~L~~L~L~~~~l~- 618 (1355)
..+..+.-+|||||.|.. +-..|.+-.+||..+++.-... + + +.+-++++|+..+||.|.+.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 447888888999988754 5556667778888888765322 1 2 33456677888888877443
Q ss_pred ccch----hhhccccCcEEeccCcchhhccchhHHh
Q 000679 619 QLPR----EIGQLVQLRLLDLRNCRRLQAIAPNVIS 650 (1355)
Q Consensus 619 ~lP~----~i~~L~~L~~L~l~~~~~l~~~p~~~i~ 650 (1355)
..|. -|.+-+.|.||.+++| .++.+..+.|+
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rig 141 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIG 141 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecC-CCCccchhHHH
Confidence 3333 3456677888888774 35544433343
No 324
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.35 E-value=0.032 Score=56.48 Aligned_cols=48 Identities=25% Similarity=0.299 Sum_probs=32.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHH
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLS 229 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 229 (1355)
..+|+|-||-|+||||||+.++++...+ +++-.+.+.+=.+...+++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~-----~~~E~vednp~L~~FY~d~~ 51 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFK-----VFYELVEDNPFLDLFYEDPE 51 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCc-----eeeecccCChHHHHHHHhHH
Confidence 4689999999999999999999998522 22333444444444444443
No 325
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.31 E-value=0.058 Score=54.49 Aligned_cols=115 Identities=16% Similarity=0.161 Sum_probs=60.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCC--CCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHh
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQT--PDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK 254 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 254 (1355)
..+++|+|+.|.|||||.+.++.... ...+.+++.-... .+..+. ..+.++.-.. -..-....-.+.+.+.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~q-LS~G~~qrl~laral~ 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSFASPRDA---RRAGIAMVYQ-LSVGERQMVEIARALA 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCcCCHHHH---HhcCeEEEEe-cCHHHHHHHHHHHHHh
Confidence 46999999999999999999987642 3455555432111 111111 1111221111 1112223334555555
Q ss_pred cCCeEEEEEeCcccccc---ccccCCCCCCccccCCCCCCCcEEEEEeCchhhh
Q 000679 255 NVKRVLVILDNIWKLLN---LDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVL 305 (1355)
Q Consensus 255 ~~k~~LlvlDdv~~~~~---~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~ 305 (1355)
. ++-++++|+-...-+ .+.+...+.. . ...|..||++|.+....
T Consensus 99 ~-~p~illlDEP~~~LD~~~~~~l~~~l~~----~--~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 99 R-NARLLILDEPTAALTPAEVERLFKVIRR----L--RAQGVAVIFISHRLDEV 145 (163)
T ss_pred c-CCCEEEEECCCcCCCHHHHHHHHHHHHH----H--HHCCCEEEEEeCCHHHH
Confidence 4 777888998755422 1222222211 0 22366788888887643
No 326
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.29 E-value=0.037 Score=53.46 Aligned_cols=22 Identities=45% Similarity=0.838 Sum_probs=20.4
Q ss_pred EEEEecCCCcHHHHHHHHHHHH
Q 000679 180 IGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 180 i~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
|+|.|+.|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999884
No 327
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.24 E-value=0.041 Score=57.53 Aligned_cols=25 Identities=44% Similarity=0.686 Sum_probs=23.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhh
Q 000679 179 MIGVYGVNGVGKTTLVKQIAMQVIE 203 (1355)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1355)
||+|.|++|+||||+|+.+......
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 6999999999999999999998863
No 328
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.23 E-value=0.04 Score=46.10 Aligned_cols=23 Identities=39% Similarity=0.668 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 000679 179 MIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
+|+|.|..|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 329
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.21 E-value=0.024 Score=34.88 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=14.8
Q ss_pred cceEEEecCCCccccCccccc
Q 000679 561 ELRVVHFTRTCFLSLPSSLVC 581 (1355)
Q Consensus 561 ~Lr~L~L~~~~~~~lp~~i~~ 581 (1355)
+|++||+++|.++.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777777776554
No 330
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.18 E-value=0.15 Score=55.52 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 000679 179 MIGVYGVNGVGKTTLVKQIAMQVI 202 (1355)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1355)
+..|+|++|+|||+||..++....
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 567899999999999999987654
No 331
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.17 E-value=0.21 Score=53.19 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=28.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCC
Q 000679 179 MIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP 219 (1355)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~ 219 (1355)
+|+|.|..|+||||+|+.+.........=..+..++...-+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 58999999999999999999876421111234455554443
No 332
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.17 E-value=0.066 Score=62.32 Aligned_cols=50 Identities=10% Similarity=0.215 Sum_probs=39.8
Q ss_pred ccchhHHHHHHHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCC
Q 000679 157 QFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFD 208 (1355)
Q Consensus 157 ~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 208 (1355)
.++||++.++.+...+..+ .-|.+.|++|+|||++|+.+.........|.
T Consensus 21 ~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred hccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 5789999999988877654 4788999999999999999998754333443
No 333
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.17 E-value=0.027 Score=59.51 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHH
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQ 200 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~ 200 (1355)
.+++.|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 489999999999999999999854
No 334
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.16 E-value=0.0079 Score=62.43 Aligned_cols=100 Identities=19% Similarity=0.191 Sum_probs=55.9
Q ss_pred CCcceEEEecCCCccccCcccccccCCcEEEecCCCCCCccccccccccceeecccCCCCccch--hhhccccCcEEecc
Q 000679 559 MNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGDVAIVGQLKKLEILSFRNSDIQQLPR--EIGQLVQLRLLDLR 636 (1355)
Q Consensus 559 l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~p~~i~~L~~L~~L~L~~~~l~~lP~--~i~~L~~L~~L~l~ 636 (1355)
+.+.+-|++.||.+.++. -..+++.|++|.|+-|+|+....+..+++|+.|.|+.|.|..+-+ -+.+|++|+.|-|.
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 334455555555554431 133555666666666666665566666666666666666555542 24566666766665
Q ss_pred Ccchhhccch----hHHhhhccccccc
Q 000679 637 NCRRLQAIAP----NVISKLSRLEELY 659 (1355)
Q Consensus 637 ~~~~l~~~p~----~~i~~L~~L~~L~ 659 (1355)
.+.....-+. .++.-|.+|+.|+
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 5443333332 2355677777775
No 335
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=94.10 E-value=0.65 Score=45.21 Aligned_cols=108 Identities=11% Similarity=0.077 Sum_probs=66.7
Q ss_pred HhhHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHccchhHHHHHHHHHHHHHHHHHH
Q 000679 7 VVSGFASKFAEVILGPIRREISYVFNYQSNVEELRTLDKELAYKREMVEQPVIQARRQGDEIYKRVEDWLNNVDDFTEDV 86 (1355)
Q Consensus 7 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~~wl~~~~~~~~d~ 86 (1355)
++||+++.+++.+...+.+..... ...+.-+++|..+++.|...+++.+.-+...+..-+.-++++.+...+
T Consensus 6 ~~gaalG~~~~eLlk~v~~~~~k~-------~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~- 77 (147)
T PF05659_consen 6 VGGAALGAVFGELLKAVIDASKKS-------LSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEK- 77 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHH-
Confidence 566666666666666655544433 334555667777777777777776654333333335556677777766
Q ss_pred HHHHhcCccccccccccCCCchhhhhhhHHHHHHHHHHHHHhh
Q 000679 87 VKSITGGEDEAKKRCFKGLCPNLIKRYSLGKKAVKAAKEGADL 129 (1355)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~i 129 (1355)
+.++...+...+ .+++...++.+++|+++.+.+...
T Consensus 78 g~~LV~k~sk~~-------r~n~~kk~~y~~Ki~~le~~l~~f 113 (147)
T PF05659_consen 78 GKELVEKCSKVR-------RWNLYKKPRYARKIEELEESLRRF 113 (147)
T ss_pred HHHHHHHhcccc-------HHHHHhhHhHHHHHHHHHHHHHHH
Confidence 666655432221 234556677888888888887766
No 336
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.09 E-value=0.3 Score=57.02 Aligned_cols=92 Identities=23% Similarity=0.374 Sum_probs=59.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCC-HHHHHHHHHHhhccc------cccCCCHHH-----
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD-LQTIQNKLSSDLELE------FKQNENVFQ----- 244 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~------~~~~~~~~~----- 244 (1355)
-..++|.|.+|+|||||+.++........ =+.++++-+++... +.++.+.+...-... .........
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 35889999999999999999887765322 25678888877654 566776666432111 001111211
Q ss_pred -HHHHHHHHHh--cCCeEEEEEeCcccc
Q 000679 245 -RAEKLRQRLK--NVKRVLVILDNIWKL 269 (1355)
Q Consensus 245 -~~~~l~~~l~--~~k~~LlvlDdv~~~ 269 (1355)
..-.+.++++ +++++|+++||+..-
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 1233555553 479999999998654
No 337
>PRK04328 hypothetical protein; Provisional
Probab=94.05 E-value=0.23 Score=54.10 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=31.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCC
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQT 218 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 218 (1355)
...++.|.|.+|+|||++|.++......+ -..++|++..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeCC
Confidence 45799999999999999999987664322 456888887664
No 338
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.05 E-value=0.14 Score=59.59 Aligned_cols=157 Identities=19% Similarity=0.299 Sum_probs=86.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcC
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNV 256 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (1355)
..=|.+||++|.|||-||++|+|+.... | +.|... +++..... ..+..++.+.++-+..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~N--F-----isVKGP----ELlNkYVG----------ESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGAN--F-----ISVKGP----ELLNKYVG----------ESERAVRQVFQRARAS 603 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCc--e-----EeecCH----HHHHHHhh----------hHHHHHHHHHHHhhcC
Confidence 4568899999999999999999998543 3 444332 22222111 1233455666666666
Q ss_pred CeEEEEEeCccccc-------cccccCCCCCCccccCCC--CCCCcEEEEEeCchhhh-hhcCCC---cceEecCCCCHH
Q 000679 257 KRVLVILDNIWKLL-------NLDAVGIPFGDVKKERND--DRSRCTVLLTSRNRDVL-CNDMNS---QKFFLIEVLSYE 323 (1355)
Q Consensus 257 k~~LlvlDdv~~~~-------~~~~~~~~~~~~~~~~~~--~~~~s~ilvTtR~~~v~-~~~~~~---~~~~~l~~L~~~ 323 (1355)
-++.|.+|.++..- .|..-+ ....++..+.+ ...|.-||-.|-.+++. ...... ....-++.-+.+
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~R-vvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~ 682 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSR-VVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAE 682 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHH-HHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHH
Confidence 89999999987541 111000 00001111111 23445556555544433 111111 356778888888
Q ss_pred HHHHHHHHHhCCCC--C--CcchHHHHHHHHHHhCCCh
Q 000679 324 EAWCLFEKIVGDSA--K--ASDFRVIADEIVRRCGGLP 357 (1355)
Q Consensus 324 ~~~~lf~~~~~~~~--~--~~~~~~~~~~i~~~c~glP 357 (1355)
|-..+++....+.. . .-+++++|+. .+|.|.-
T Consensus 683 eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 683 ERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 99999988885321 1 2244554432 3555654
No 339
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.04 E-value=0.11 Score=54.77 Aligned_cols=56 Identities=21% Similarity=0.300 Sum_probs=37.5
Q ss_pred HHHHHHHhh--cCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCC
Q 000679 165 FQNIMEVLK--DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD 220 (1355)
Q Consensus 165 ~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 220 (1355)
..++++.+. ..+..+|+|.|++|+|||||...+....+.+.+=-.++=|+-|..++
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~t 72 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFT 72 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCC
Confidence 445555554 34668999999999999999999999987654444555566565554
No 340
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.03 E-value=0.16 Score=55.94 Aligned_cols=26 Identities=31% Similarity=0.293 Sum_probs=23.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHh
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1355)
-+-|.++|++|.|||-||++||.+-.
T Consensus 245 WkgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 245 WKGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred cceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 46789999999999999999999875
No 341
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.98 E-value=0.26 Score=51.54 Aligned_cols=90 Identities=24% Similarity=0.318 Sum_probs=48.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhhcCC--------CEEEEEEeCCCCCHHHHHHHHHHhhccccc------------
Q 000679 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLF--------DKVVFVEVTQTPDLQTIQNKLSSDLELEFK------------ 237 (1355)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--------~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------------ 237 (1355)
.++.|+|++|+||||++..++........| ..++|++.... ..++.+.+.........
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~~~~~~~~~~~~~~~~~~~~~ 110 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRLRALLQDYDDDANLFFVDLSNW 110 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHHHHHHTTS-HHHHHHHHHH--E
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHHHHHhcccCCccceEEeecccc
Confidence 588999999999999999999887653333 35778876655 33444433322211000
Q ss_pred ----------cCCCHHHHHHHHHHHHhc-CCeEEEEEeCcccc
Q 000679 238 ----------QNENVFQRAEKLRQRLKN-VKRVLVILDNIWKL 269 (1355)
Q Consensus 238 ----------~~~~~~~~~~~l~~~l~~-~k~~LlvlDdv~~~ 269 (1355)
.........+.+.+.+.. .+.-++|+|.+...
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~ 153 (193)
T PF13481_consen 111 GCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSL 153 (193)
T ss_dssp -EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG
T ss_pred ccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHH
Confidence 000113344556666664 34568888987543
No 342
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.93 E-value=0.14 Score=50.32 Aligned_cols=42 Identities=21% Similarity=0.333 Sum_probs=31.9
Q ss_pred EEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHH
Q 000679 180 IGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQN 226 (1355)
Q Consensus 180 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 226 (1355)
|.++|+.|+|||+||+.+++... ....-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~-----~~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG-----RPVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT-----CEEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhh-----cceEEEEecccccccccee
Confidence 67999999999999999999872 2344567777777776653
No 343
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.92 E-value=0.11 Score=53.44 Aligned_cols=50 Identities=26% Similarity=0.448 Sum_probs=34.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhcccc
Q 000679 179 MIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEF 236 (1355)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 236 (1355)
.|+|.|-||+||||+|..++.....++.|+ ++=|+...+++. ..+++.+.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~-VLvVDaDpd~nL-------~~~LGve~ 51 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYN-VLVVDADPDSNL-------PEALGVEE 51 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCce-EEEEeCCCCCCh-------HHhcCCCC
Confidence 689999999999999999777765444343 444666555543 34555554
No 344
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.92 E-value=0.14 Score=50.40 Aligned_cols=103 Identities=26% Similarity=0.237 Sum_probs=55.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhc
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKN 255 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 255 (1355)
...+++|+|..|.|||||++.+..... ...+.+|+.-. ..++.-.. -.......-.+.+.+..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~-------------~~i~~~~~-lS~G~~~rv~laral~~ 87 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGST-------------VKIGYFEQ-LSGGEKMRLALAKLLLE 87 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCe-------------EEEEEEcc-CCHHHHHHHHHHHHHhc
Confidence 346899999999999999999987653 23444444210 00000000 01112222334555554
Q ss_pred CCeEEEEEeCcccccc---ccccCCCCCCccccCCCCCCCcEEEEEeCchhhh
Q 000679 256 VKRVLVILDNIWKLLN---LDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVL 305 (1355)
Q Consensus 256 ~k~~LlvlDdv~~~~~---~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~ 305 (1355)
++-++++|+-...-+ .+.+...+.. . +..||++|.+.+.+
T Consensus 88 -~p~illlDEP~~~LD~~~~~~l~~~l~~-------~--~~til~~th~~~~~ 130 (144)
T cd03221 88 -NPNLLLLDEPTNHLDLESIEALEEALKE-------Y--PGTVILVSHDRYFL 130 (144)
T ss_pred -CCCEEEEeCCccCCCHHHHHHHHHHHHH-------c--CCEEEEEECCHHHH
Confidence 667888998654422 2222222222 1 24688888877654
No 345
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.90 E-value=0.32 Score=52.66 Aligned_cols=87 Identities=16% Similarity=0.262 Sum_probs=54.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhcccccc-----------------
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQ----------------- 238 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~----------------- 238 (1355)
...++.|+|.+|+|||++|.++...... .=..++|++..+. ..++.+++ .+++....+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~--~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALK--QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHh--CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 3578999999999999999999765432 2357888888654 44555543 233321110
Q ss_pred ---CCCHHHHHHHHHHHHhcCCeEEEEEeCcc
Q 000679 239 ---NENVFQRAEKLRQRLKNVKRVLVILDNIW 267 (1355)
Q Consensus 239 ---~~~~~~~~~~l~~~l~~~k~~LlvlDdv~ 267 (1355)
..........+.+.+.+.+.-++|+|.+.
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 11234555666666654455688999875
No 346
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.87 E-value=0.055 Score=57.47 Aligned_cols=27 Identities=33% Similarity=0.476 Sum_probs=24.2
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHH
Q 000679 175 TNVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
.+..+|+|.|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 347
>PTZ00301 uridine kinase; Provisional
Probab=93.87 E-value=0.056 Score=56.67 Aligned_cols=26 Identities=31% Similarity=0.652 Sum_probs=23.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHh
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1355)
..+|+|.|.+|+||||+|+.+.....
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 46899999999999999999988764
No 348
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.86 E-value=0.8 Score=55.14 Aligned_cols=26 Identities=38% Similarity=0.560 Sum_probs=22.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHH
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
....|+|+|+.|+|||||.+.+....
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~ 372 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGEL 372 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 34689999999999999999997654
No 349
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.84 E-value=0.17 Score=51.28 Aligned_cols=123 Identities=17% Similarity=0.074 Sum_probs=62.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEE-------EeCCCCCH--HHHHHHHHHhhccccccCCCHHHHH
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV-------EVTQTPDL--QTIQNKLSSDLELEFKQNENVFQRA 246 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-------~~s~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~ 246 (1355)
...+++|+|+.|.|||||++.+...... ..+.+++ .+.+.+.. ..+.+.+.-. ....-..-....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~r 99 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPW---GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQR 99 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHH
Confidence 3468999999999999999999886532 1222211 12232211 1233333210 111111222233
Q ss_pred HHHHHHHhcCCeEEEEEeCccccccc---cccCCCCCCccccCCCCCCCcEEEEEeCchhhhhhcCCCcceEec
Q 000679 247 EKLRQRLKNVKRVLVILDNIWKLLNL---DAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCNDMNSQKFFLI 317 (1355)
Q Consensus 247 ~~l~~~l~~~k~~LlvlDdv~~~~~~---~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~~~~~~~~~~l 317 (1355)
-.+.+.+.. ++=++++|+-...-+. +.+...+.. . +..||++|.+..... ...+++.+
T Consensus 100 v~laral~~-~p~~lllDEPt~~LD~~~~~~l~~~l~~-------~--~~tiiivsh~~~~~~---~~d~i~~l 160 (166)
T cd03223 100 LAFARLLLH-KPKFVFLDEATSALDEESEDRLYQLLKE-------L--GITVISVGHRPSLWK---FHDRVLDL 160 (166)
T ss_pred HHHHHHHHc-CCCEEEEECCccccCHHHHHHHHHHHHH-------h--CCEEEEEeCChhHHh---hCCEEEEE
Confidence 345555554 7778889986544322 222222211 1 356888888876532 23444444
No 350
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.82 E-value=0.29 Score=53.62 Aligned_cols=40 Identities=30% Similarity=0.462 Sum_probs=30.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCC
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQ 217 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 217 (1355)
...++.|.|.+|+|||++|.+++.....+ =..++|++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecC
Confidence 34789999999999999999987765322 24678888764
No 351
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.81 E-value=0.17 Score=52.00 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=24.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHh
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1355)
...+|+|+|++|+||||+|+.++....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346999999999999999999999875
No 352
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.80 E-value=0.61 Score=43.53 Aligned_cols=44 Identities=16% Similarity=0.261 Sum_probs=33.1
Q ss_pred cchhHHHHHHHHHHhh----c---CCceEEEEEecCCCcHHHHHHHHHHHH
Q 000679 158 FDSRMKIFQNIMEVLK----D---TNVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 158 ~~gr~~~~~~l~~~L~----~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
++|..-+.+.+++.+. . .+.-|++.+|+.|+|||.+|+.+++..
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 5566666666666554 2 345688999999999999999999874
No 353
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=93.78 E-value=0.1 Score=49.19 Aligned_cols=69 Identities=16% Similarity=0.205 Sum_probs=40.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhc
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKN 255 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 255 (1355)
.+-|.|.|.+|+||||+|.+++.... | -|+++|+-.....+....-.+..-. .-+.+...+.+-..+..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~----~---~~i~isd~vkEn~l~~gyDE~y~c~---i~DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTG----L---EYIEISDLVKENNLYEGYDEEYKCH---ILDEDKVLDELEPLMIE 75 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhC----C---ceEehhhHHhhhcchhcccccccCc---cccHHHHHHHHHHHHhc
Confidence 35688999999999999999995542 2 3677765433333322221111110 13455566666666654
No 354
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.75 E-value=0.28 Score=57.90 Aligned_cols=86 Identities=20% Similarity=0.268 Sum_probs=47.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCC--CHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHh
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP--DLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK 254 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 254 (1355)
.+|++++|+.|+||||.+.+++.....+..-..+..|+.. .+ ...+-++..++..+.......+..+....+ ..+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~D-t~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~ 333 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTD-SYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELR 333 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCC-ccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-Hhcc
Confidence 3799999999999999999999876433222345555543 23 233444555555554433222222222222 2233
Q ss_pred cCCeEEEEEeCc
Q 000679 255 NVKRVLVILDNI 266 (1355)
Q Consensus 255 ~~k~~LlvlDdv 266 (1355)
.+..+++|-.
T Consensus 334 --d~d~VLIDTa 343 (484)
T PRK06995 334 --NKHIVLIDTI 343 (484)
T ss_pred --CCCeEEeCCC
Confidence 2346666765
No 355
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=93.74 E-value=2.1 Score=44.39 Aligned_cols=50 Identities=24% Similarity=0.301 Sum_probs=39.9
Q ss_pred cCCccccchhHHHHHHHHHHhhc-------------CCceEEEEEecCCCcHHHHHHHHHHHH
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLKD-------------TNVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
...+.++-|-++.++++++.+.= ...+-+..+|++|.|||-+|++.+..-
T Consensus 167 tE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT 229 (424)
T KOG0652|consen 167 TEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT 229 (424)
T ss_pred cccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc
Confidence 34566788999999999987740 234678899999999999999988764
No 356
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.72 E-value=0.18 Score=54.42 Aligned_cols=90 Identities=19% Similarity=0.336 Sum_probs=54.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhcccccc-----------------
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQ----------------- 238 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~----------------- 238 (1355)
...++.|.|.+|+|||++|.++......+. =+.++||+..+. ..++.+.+. +++.+...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~-ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF-GEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH-T--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc-CCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEecccccc
Confidence 457999999999999999999776543220 145788887554 344444432 33321100
Q ss_pred ---CCCHHHHHHHHHHHHhcCCeEEEEEeCcccc
Q 000679 239 ---NENVFQRAEKLRQRLKNVKRVLVILDNIWKL 269 (1355)
Q Consensus 239 ---~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 269 (1355)
..+.......+.+.+++.+...+|+|.+...
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 1345666677777766545578899987544
No 357
>PRK08233 hypothetical protein; Provisional
Probab=93.72 E-value=0.056 Score=56.04 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=23.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHh
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1355)
..+|+|.|.+|+||||+|+.++....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998753
No 358
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.71 E-value=0.14 Score=52.28 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=23.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHH
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
...+++|+|+.|.|||||.+.++.-.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34699999999999999999998865
No 359
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.70 E-value=0.061 Score=56.95 Aligned_cols=28 Identities=36% Similarity=0.427 Sum_probs=24.4
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHHh
Q 000679 175 TNVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1355)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1355)
....+|+|+|++|+||||||+.++....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457999999999999999999998754
No 360
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.69 E-value=0.44 Score=55.41 Aligned_cols=93 Identities=22% Similarity=0.371 Sum_probs=59.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCC-HHHHHHHHHHhhcccc------ccCCCHHH----
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD-LQTIQNKLSSDLELEF------KQNENVFQ---- 244 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~------~~~~~~~~---- 244 (1355)
.-..++|.|.+|+|||||+.++....... +=+.++++-+++... +.++.+++...-.... ........
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~-~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhc-CCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 34588999999999999999998776432 235778888877654 5667776654311110 11112221
Q ss_pred --HHHHHHHHHhc--CCeEEEEEeCcccc
Q 000679 245 --RAEKLRQRLKN--VKRVLVILDNIWKL 269 (1355)
Q Consensus 245 --~~~~l~~~l~~--~k~~LlvlDdv~~~ 269 (1355)
..-.+.+++++ ++++|+++||+..-
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 22345666654 69999999998654
No 361
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.68 E-value=0.15 Score=58.61 Aligned_cols=87 Identities=24% Similarity=0.293 Sum_probs=51.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccC-CCHHHHHHHHHHHHhc
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQN-ENVFQRAEKLRQRLKN 255 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~l~~~l~~ 255 (1355)
..++.|.|.+|+|||||+.+++...... -..++|++..+. ..++. .-++.++...+.. .........+.+.+..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 4689999999999999999999876532 356788876433 33332 2234444322110 0001113344444444
Q ss_pred CCeEEEEEeCccc
Q 000679 256 VKRVLVILDNIWK 268 (1355)
Q Consensus 256 ~k~~LlvlDdv~~ 268 (1355)
.+.-++|+|.+..
T Consensus 157 ~~~~lVVIDSIq~ 169 (372)
T cd01121 157 LKPDLVIIDSIQT 169 (372)
T ss_pred cCCcEEEEcchHH
Confidence 4667899999853
No 362
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.67 E-value=0.13 Score=50.10 Aligned_cols=39 Identities=21% Similarity=0.368 Sum_probs=28.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCC
Q 000679 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQ 217 (1355)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 217 (1355)
++|.|+|+.|+|||||++.+.+.... ..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~-~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKR-RGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHH-TT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhH-cCCceEEEEEccC
Confidence 48999999999999999999999864 4466665666554
No 363
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.67 E-value=0.43 Score=55.42 Aligned_cols=87 Identities=18% Similarity=0.273 Sum_probs=48.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCC-CCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhc
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQ-TPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKN 255 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 255 (1355)
..+|+++|+.|+||||++..++.........+.+..+.... .....+-+...++.++.+.....+..+.. .....+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~-~al~~l~- 268 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQ-LMLHELR- 268 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHH-HHHHHhc-
Confidence 47999999999999999999887643322234455554332 12233334455555555544333333333 2223333
Q ss_pred CCeEEEEEeCc
Q 000679 256 VKRVLVILDNI 266 (1355)
Q Consensus 256 ~k~~LlvlDdv 266 (1355)
..-++++|-.
T Consensus 269 -~~d~VLIDTa 278 (420)
T PRK14721 269 -GKHMVLIDTV 278 (420)
T ss_pred -CCCEEEecCC
Confidence 3345666654
No 364
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.67 E-value=0.67 Score=52.45 Aligned_cols=98 Identities=20% Similarity=0.244 Sum_probs=53.9
Q ss_pred HHHHHHHhhcC----CceEEEEEecCCCcHH-HHHHHHHHHHhhhcCCCEEEEEEeCCC-CCHHHHHHHHHHhhcccccc
Q 000679 165 FQNIMEVLKDT----NVGMIGVYGVNGVGKT-TLVKQIAMQVIEDKLFDKVVFVEVTQT-PDLQTIQNKLSSDLELEFKQ 238 (1355)
Q Consensus 165 ~~~l~~~L~~~----~~~vi~I~G~gGiGKT-tLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~ 238 (1355)
...+..++.++ +.++|++||+.|+||| |||+.++..... ..=..+..|+.... ....+=++..++-++.+...
T Consensus 187 l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~-~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~v 265 (407)
T COG1419 187 LRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVML-KKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEV 265 (407)
T ss_pred HHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhh-ccCcceEEEEeccchhhHHHHHHHHHHHhCCceEE
Confidence 34444555443 4689999999999996 556555554422 22345666765432 12344455556666666555
Q ss_pred CCCHHHHHHHHHHHHhcCCeEEEEEeCc
Q 000679 239 NENVFQRAEKLRQRLKNVKRVLVILDNI 266 (1355)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~k~~LlvlDdv 266 (1355)
..+..+....+.. +++ . =+|.+|-+
T Consensus 266 v~~~~el~~ai~~-l~~-~-d~ILVDTa 290 (407)
T COG1419 266 VYSPKELAEAIEA-LRD-C-DVILVDTA 290 (407)
T ss_pred ecCHHHHHHHHHH-hhc-C-CEEEEeCC
Confidence 4455554444432 332 2 34445544
No 365
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.65 E-value=0.23 Score=57.43 Aligned_cols=90 Identities=14% Similarity=0.238 Sum_probs=55.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCC-HHHHHHHHHHhhcccc------ccCCCHHH----
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD-LQTIQNKLSSDLELEF------KQNENVFQ---- 244 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~------~~~~~~~~---- 244 (1355)
....++|+|..|+|||||++.++... ..+.++.+-+++... +.++.+.++..-+... ..++....
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 34689999999999999999998643 236666677777654 4556665543311110 00111111
Q ss_pred --HHHHHHHHHh-cCCeEEEEEeCcccc
Q 000679 245 --RAEKLRQRLK-NVKRVLVILDNIWKL 269 (1355)
Q Consensus 245 --~~~~l~~~l~-~~k~~LlvlDdv~~~ 269 (1355)
..-.+.++++ +++++|+++||+..-
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 1222444443 379999999998654
No 366
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.58 E-value=0.065 Score=52.92 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 000679 179 MIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 58899999999999999998765
No 367
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.58 E-value=0.25 Score=61.40 Aligned_cols=86 Identities=16% Similarity=0.209 Sum_probs=58.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhcccccc-----CCCHHHHHHHHH
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQ-----NENVFQRAEKLR 250 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 250 (1355)
..+++-|+|..|+||||||.+++...... =..++||+..+.++. ..+++++.+.+. ....+.....+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 35788899999999999998876654322 256789988777774 356666654332 234455555555
Q ss_pred HHHhcCCeEEEEEeCccc
Q 000679 251 QRLKNVKRVLVILDNIWK 268 (1355)
Q Consensus 251 ~~l~~~k~~LlvlDdv~~ 268 (1355)
..+.+++--|||+|.+..
T Consensus 132 ~lv~~~~~~LVVIDSI~a 149 (790)
T PRK09519 132 MLIRSGALDIVVIDSVAA 149 (790)
T ss_pred HHhhcCCCeEEEEcchhh
Confidence 555555677999999853
No 368
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.53 E-value=0.15 Score=54.60 Aligned_cols=59 Identities=25% Similarity=0.367 Sum_probs=43.9
Q ss_pred HHHHHHhh--cCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHH
Q 000679 166 QNIMEVLK--DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTI 224 (1355)
Q Consensus 166 ~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 224 (1355)
.+++..+. .++..+|+|.|.+|+|||||.-.+....+.+.+=-.++=|+-|..++--.+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsi 98 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSI 98 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccc
Confidence 34444444 456679999999999999999999999877666566777777777654333
No 369
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.53 E-value=0.49 Score=58.77 Aligned_cols=87 Identities=18% Similarity=0.224 Sum_probs=52.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCC--HHHHHHHHHHhhccccccCCCHHHHHHHHHHHHh
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD--LQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK 254 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 254 (1355)
.++|+++|+.|+||||.+.+++...........+..++.. .+. ..+-++...+.++.+.....+..+.... .+.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~a-l~~~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVHAVKDAADLRFA-LAALG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCccccCCHHHHHHH-HHHhc
Confidence 4799999999999999999998876433222355555543 333 4455566666666554433344443333 33444
Q ss_pred cCCeEEEEEeCcc
Q 000679 255 NVKRVLVILDNIW 267 (1355)
Q Consensus 255 ~~k~~LlvlDdv~ 267 (1355)
+ + -++++|-.-
T Consensus 263 ~-~-D~VLIDTAG 273 (767)
T PRK14723 263 D-K-HLVLIDTVG 273 (767)
T ss_pred C-C-CEEEEeCCC
Confidence 2 3 477778764
No 370
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=93.51 E-value=1.7 Score=48.26 Aligned_cols=166 Identities=11% Similarity=0.053 Sum_probs=90.4
Q ss_pred HHHHHHhhcCC-ceEEEEEecCCCcHHHHHHHHHHHHh--------hhcCCCEEEEEEe-CCCCCHHHHHHHHHHhhccc
Q 000679 166 QNIMEVLKDTN-VGMIGVYGVNGVGKTTLVKQIAMQVI--------EDKLFDKVVFVEV-TQTPDLQTIQNKLSSDLELE 235 (1355)
Q Consensus 166 ~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~--------~~~~F~~~~wv~~-s~~~~~~~~~~~i~~~l~~~ 235 (1355)
+.+...+..+. ..+.-++|..|.||+++|..+.+..- ...|-+.+.++.. +....++++. ++.+.+...
T Consensus 6 ~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~ 84 (299)
T PRK07132 6 KFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFS 84 (299)
T ss_pred HHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccC
Confidence 34444554443 45677999999999999999998761 1122223333322 2223333333 233322211
Q ss_pred cccCCCHHHHHHHHHHHHhcCCeEEEEEeCccccc--cccccCCCCCCccccCCCCCCCcEEEEEeCc-hhhhhhcCCCc
Q 000679 236 FKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSRN-RDVLCNDMNSQ 312 (1355)
Q Consensus 236 ~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~-~~v~~~~~~~~ 312 (1355)
. ...+++=++|+|+++... ..+.+...+.. -..++.+|++|.+ ..+........
T Consensus 85 ~----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEE-------Pp~~t~~il~~~~~~kll~TI~SRc 141 (299)
T PRK07132 85 S----------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEE-------PPKDTYFLLTTKNINKVLPTIVSRC 141 (299)
T ss_pred C----------------cccCCceEEEEecccccCHHHHHHHHHHhhC-------CCCCeEEEEEeCChHhChHHHHhCe
Confidence 1 011366788888886653 23334333333 3455666655543 34333223446
Q ss_pred ceEecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 000679 313 KFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKT 362 (1355)
Q Consensus 313 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 362 (1355)
..+++.++++++..+.+.+. + .+ ++.++.++...+|.=-|+..
T Consensus 142 ~~~~f~~l~~~~l~~~l~~~-~---~~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 142 QVFNVKEPDQQKILAKLLSK-N---KE---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred EEEECCCCCHHHHHHHHHHc-C---CC---hhHHHHHHHHcCCHHHHHHH
Confidence 78999999999988777654 1 11 23356666667763345544
No 371
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.49 E-value=0.13 Score=52.93 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=22.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHH
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
...+++|+|+.|.|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34689999999999999999998764
No 372
>PRK05439 pantothenate kinase; Provisional
Probab=93.45 E-value=0.44 Score=52.95 Aligned_cols=45 Identities=22% Similarity=0.163 Sum_probs=30.4
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCC
Q 000679 175 TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP 219 (1355)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~ 219 (1355)
...-+|+|.|.+|+||||+|+.+.........-..+.-++...-+
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 456799999999999999999998865421111234445554443
No 373
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=93.40 E-value=0.075 Score=54.77 Aligned_cols=27 Identities=41% Similarity=0.581 Sum_probs=24.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHh
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1355)
++.+|+|.|.+|.||||+|+.++....
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 457999999999999999999999875
No 374
>PRK06762 hypothetical protein; Provisional
Probab=93.39 E-value=0.073 Score=54.15 Aligned_cols=25 Identities=36% Similarity=0.546 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHH
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
..+|.|.|++|+||||+|+.+....
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 375
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.35 E-value=0.14 Score=48.69 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=28.6
Q ss_pred HHHHHHHHhhc--CCceEEEEEecCCCcHHHHHHHHHHHHh
Q 000679 164 IFQNIMEVLKD--TNVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1355)
Q Consensus 164 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1355)
+.+++-+.+.. ....+|.+.|.-|+||||+++.++....
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34444444432 2346999999999999999999999864
No 376
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.35 E-value=0.075 Score=67.26 Aligned_cols=191 Identities=16% Similarity=0.161 Sum_probs=89.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHH-hhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhcccccc---CCCHHHHHHHHHH
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQV-IEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQ---NENVFQRAEKLRQ 251 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 251 (1355)
+.+++.|.|+.|.||||+.+.+.... ..+.. ++|.+.....+ ..+.++...++....- ..+-......+..
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G----~~Vpa~~~~~~-~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~ 395 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSG----IPIPANEHSEI-PYFEEIFADIGDEQSIEQNLSTFSGHMKNISA 395 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhC----CCccCCccccc-cchhheeeecChHhHHhhhhhHHHHHHHHHHH
Confidence 44799999999999999999998762 21111 11222111000 0011111111100000 0001111122222
Q ss_pred HHhc-CCeEEEEEeCcccccccc---ccCCCCCCccccCCCCCCCcEEEEEeCchhhhhhcCCCcce--EecCCCCHHHH
Q 000679 252 RLKN-VKRVLVILDNIWKLLNLD---AVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCNDMNSQKF--FLIEVLSYEEA 325 (1355)
Q Consensus 252 ~l~~-~k~~LlvlDdv~~~~~~~---~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~~~~~~~~--~~l~~L~~~~~ 325 (1355)
.+.. .++-|+++|..-...+.. .+...+ +..+ ...|+.+|+||...++.........+ ..+. ++.+ .
T Consensus 396 il~~~~~~sLvLlDE~g~GtD~~eg~ala~ai---Le~l--~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~~-~ 468 (771)
T TIGR01069 396 ILSKTTENSLVLFDELGAGTDPDEGSALAISI---LEYL--LKQNAQVLITTHYKELKALMYNNEGVENASVL-FDEE-T 468 (771)
T ss_pred HHHhcCCCcEEEecCCCCCCCHHHHHHHHHHH---HHHH--HhcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcCC-C
Confidence 2221 378999999987653321 221111 0010 23578999999998775322211111 1111 1111 0
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHhcCChHHHHHHHHHHh
Q 000679 326 WCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANALKNKRLYVWNDSLERLR 383 (1355)
Q Consensus 326 ~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~w~~~l~~l~ 383 (1355)
.. |.-+.....+. ...|-.|++++ |+|-.+.--|..+......++..++..+.
T Consensus 469 l~-p~Ykl~~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~ 521 (771)
T TIGR01069 469 LS-PTYKLLKGIPG---ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLS 521 (771)
T ss_pred Cc-eEEEECCCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 00 00000011111 23477888887 88888877777776555556776666663
No 377
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.34 E-value=0.23 Score=51.63 Aligned_cols=45 Identities=18% Similarity=0.211 Sum_probs=31.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHH
Q 000679 179 MIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNK 227 (1355)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 227 (1355)
++.|.|++|+|||++|.+++...... =..++|++... +..++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCC--CHHHHHHH
Confidence 36789999999999999988775422 24577887654 34444433
No 378
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=93.33 E-value=0.33 Score=56.89 Aligned_cols=92 Identities=24% Similarity=0.330 Sum_probs=59.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCC-HHHHHHHHHHhhcccc-------------ccCCCH
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD-LQTIQNKLSSDLELEF-------------KQNENV 242 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~-------------~~~~~~ 242 (1355)
-..++|.|..|+|||||+..+...... .+=+.++++-+++... +.++...+...-.... ...+..
T Consensus 161 GQR~gIfgg~GvGKs~L~~~~~~~~~~-~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~ 239 (494)
T CHL00060 161 GGKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPP 239 (494)
T ss_pred CCEEeeecCCCCChhHHHHHHHHHHHH-hcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCCH
Confidence 357899999999999999998887432 1127888998887754 5677776665111100 001111
Q ss_pred H------HHHHHHHHHHhc-CC-eEEEEEeCcccc
Q 000679 243 F------QRAEKLRQRLKN-VK-RVLVILDNIWKL 269 (1355)
Q Consensus 243 ~------~~~~~l~~~l~~-~k-~~LlvlDdv~~~ 269 (1355)
. ...-.+.+++++ ++ ++||++||+..-
T Consensus 240 ~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~ 274 (494)
T CHL00060 240 GARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRF 274 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHH
Confidence 1 123346666754 44 999999998654
No 379
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.30 E-value=0.25 Score=49.88 Aligned_cols=81 Identities=17% Similarity=0.239 Sum_probs=47.6
Q ss_pred EEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcC-Ce
Q 000679 180 IGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNV-KR 258 (1355)
Q Consensus 180 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~-k~ 258 (1355)
+.|.|..|+|||++|.++... ....++|+.-.+.++. ++.+.|.+.-...... ....+....+.+.+.+. +.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~-w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRRPAH-WRTIETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhCCCC-ceEeecHHHHHHHHHhcCCC
Confidence 678999999999999999765 1346778877777665 3555544422221111 12222233444444321 33
Q ss_pred EEEEEeCcc
Q 000679 259 VLVILDNIW 267 (1355)
Q Consensus 259 ~LlvlDdv~ 267 (1355)
-.+++|.+.
T Consensus 75 ~~VLIDclt 83 (169)
T cd00544 75 DVVLIDCLT 83 (169)
T ss_pred CEEEEEcHh
Confidence 379999863
No 380
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.26 E-value=0.17 Score=50.54 Aligned_cols=27 Identities=33% Similarity=0.518 Sum_probs=23.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhh
Q 000679 178 GMIGVYGVNGVGKTTLVKQIAMQVIED 204 (1355)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 204 (1355)
+.|-+.|.+|+||||+|++++...+.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 457788999999999999999987643
No 381
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.24 E-value=0.0063 Score=61.36 Aligned_cols=90 Identities=13% Similarity=0.128 Sum_probs=77.6
Q ss_pred ccChhhhcCCCcceEEEecCCCccccCcccccccCCcEEEecCCCCCC-ccccccccccceeecccCCCCccchhhhccc
Q 000679 550 KIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGD-VAIVGQLKKLEILSFRNSDIQQLPREIGQLV 628 (1355)
Q Consensus 550 ~lp~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~-p~~i~~L~~L~~L~L~~~~l~~lP~~i~~L~ 628 (1355)
.+|-.-+..++...+||++.+.+-.+-..|+.+..|.-|+++.+.+.. |..++.+..++.+++..|+...+|.+.++++
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~ 111 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEP 111 (326)
T ss_pred ccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccC
Confidence 344333467888999999999988888889999999999999999888 9999999999999999999999999999999
Q ss_pred cCcEEeccCcc
Q 000679 629 QLRLLDLRNCR 639 (1355)
Q Consensus 629 ~L~~L~l~~~~ 639 (1355)
+++++++.++.
T Consensus 112 ~~k~~e~k~~~ 122 (326)
T KOG0473|consen 112 HPKKNEQKKTE 122 (326)
T ss_pred CcchhhhccCc
Confidence 99999988854
No 382
>PF13245 AAA_19: Part of AAA domain
Probab=93.19 E-value=0.24 Score=42.22 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=18.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHH
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
+.+++.|.|++|.|||+++.+.....
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34688889999999995555544443
No 383
>PRK03839 putative kinase; Provisional
Probab=93.19 E-value=0.075 Score=54.90 Aligned_cols=24 Identities=42% Similarity=0.599 Sum_probs=21.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 000679 179 MIGVYGVNGVGKTTLVKQIAMQVI 202 (1355)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1355)
.|.|+|++|+||||+|+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999863
No 384
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.16 E-value=0.24 Score=57.80 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=34.1
Q ss_pred ccchhHHHHHHHHHHhh-------cC---------CceEEEEEecCCCcHHHHHHHHHHHH
Q 000679 157 QFDSRMKIFQNIMEVLK-------DT---------NVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 157 ~~~gr~~~~~~l~~~L~-------~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
.++|.+..++.+...+. .. ..+.|.++|+.|+|||++|+.++...
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 36798888887755442 10 23568999999999999999999765
No 385
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.14 E-value=0.23 Score=49.06 Aligned_cols=117 Identities=26% Similarity=0.256 Sum_probs=61.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEE--EEEeCCCCCHHHHHHHHHHhhc-----cccc-cCCCHHH-----
Q 000679 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVV--FVEVTQTPDLQTIQNKLSSDLE-----LEFK-QNENVFQ----- 244 (1355)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~--wv~~s~~~~~~~~~~~i~~~l~-----~~~~-~~~~~~~----- 244 (1355)
..|-|++..|.||||+|...+-+.... .+...+ |+.-........+++.+ ..+. .... ...+..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~-g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGH-GYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHH
Confidence 578888889999999999988876432 232222 22222223333333333 0110 0000 0011111
Q ss_pred --HHHHHHHHHhcCCeEEEEEeCccccccc-----cccCCCCCCccccCCCCCCCcEEEEEeCchh
Q 000679 245 --RAEKLRQRLKNVKRVLVILDNIWKLLNL-----DAVGIPFGDVKKERNDDRSRCTVLLTSRNRD 303 (1355)
Q Consensus 245 --~~~~l~~~l~~~k~~LlvlDdv~~~~~~-----~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~ 303 (1355)
..+..++.+..++-=|+|||++-....+ +.+...+.. ...+.-||+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~-------rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKA-------KPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHc-------CCCCCEEEEECCCCC
Confidence 2223344444445569999998655322 233222222 456778999999974
No 386
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.12 E-value=0.5 Score=55.13 Aligned_cols=92 Identities=18% Similarity=0.179 Sum_probs=54.2
Q ss_pred ceEEEEEecCCCcHHHHH-HHHHHHHhh-----hcCCCEEEEEEeCCCCC-HHHHHHHHHHhhc-ccc------ccCCCH
Q 000679 177 VGMIGVYGVNGVGKTTLV-KQIAMQVIE-----DKLFDKVVFVEVTQTPD-LQTIQNKLSSDLE-LEF------KQNENV 242 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~-----~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~-~~~------~~~~~~ 242 (1355)
-..++|.|..|+|||+|| ..+.+...+ .+.-+.++++-+++..+ +.++. +.+++-+ .+. ...+..
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~-~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIH-RLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHH-HHHHhcCCccceEEEEECCCCCH
Confidence 357899999999999997 556666432 12446788999988765 34433 3333322 110 011111
Q ss_pred HH------HHHHHHHHHh-cCCeEEEEEeCcccc
Q 000679 243 FQ------RAEKLRQRLK-NVKRVLVILDNIWKL 269 (1355)
Q Consensus 243 ~~------~~~~l~~~l~-~~k~~LlvlDdv~~~ 269 (1355)
.. ..-.+.++++ +++.+|+|+||+...
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHH
Confidence 11 1222344443 369999999998654
No 387
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.10 E-value=0.32 Score=54.73 Aligned_cols=36 Identities=17% Similarity=0.358 Sum_probs=25.8
Q ss_pred EEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeC
Q 000679 180 IGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVT 216 (1355)
Q Consensus 180 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 216 (1355)
+++.|++|+||||+++.+.+.......+ .+.+++..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~-~v~~~~~D 37 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGW-AVAVITYD 37 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCC-eEEEEccc
Confidence 5789999999999999999887532222 24444443
No 388
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.08 E-value=0.51 Score=51.03 Aligned_cols=96 Identities=17% Similarity=0.173 Sum_probs=56.1
Q ss_pred ceEEEEEecCCCcHHHHH-HHHHHHHhhhcCCCEE-EEEEeCCCCC-HHHHHHHHHHhhccc------cccCCCHHH---
Q 000679 177 VGMIGVYGVNGVGKTTLV-KQIAMQVIEDKLFDKV-VFVEVTQTPD-LQTIQNKLSSDLELE------FKQNENVFQ--- 244 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~~s~~~~-~~~~~~~i~~~l~~~------~~~~~~~~~--- 244 (1355)
-..++|.|..|+|||+|| ..+.+.. .-+.+ +++-+.+... +.++.+.+...-... ....+....
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 357899999999999996 5555432 23444 6777777654 566666665432111 001111111
Q ss_pred ---HHHHHHHHHh-cCCeEEEEEeCcccc-ccccccC
Q 000679 245 ---RAEKLRQRLK-NVKRVLVILDNIWKL-LNLDAVG 276 (1355)
Q Consensus 245 ---~~~~l~~~l~-~~k~~LlvlDdv~~~-~~~~~~~ 276 (1355)
..-.+.+++. +++.+|+|+||+... ..|+++.
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEis 181 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMS 181 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHHH
Confidence 1223344443 369999999999665 4455543
No 389
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.07 E-value=0.072 Score=49.27 Aligned_cols=24 Identities=42% Similarity=0.803 Sum_probs=21.0
Q ss_pred EEEEecCCCcHHHHHHHHHHHHhh
Q 000679 180 IGVYGVNGVGKTTLVKQIAMQVIE 203 (1355)
Q Consensus 180 i~I~G~gGiGKTtLa~~v~~~~~~ 203 (1355)
|-|+|++|+|||++|+.++.+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999988753
No 390
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.04 E-value=0.23 Score=56.65 Aligned_cols=74 Identities=20% Similarity=0.284 Sum_probs=47.1
Q ss_pred ccchhHHHHHHHHHHhhc--------------CCceEEEEEecCCCcHHHHHHHHHHHHhhhcCC---CEEEEEEeCC-C
Q 000679 157 QFDSRMKIFQNIMEVLKD--------------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLF---DKVVFVEVTQ-T 218 (1355)
Q Consensus 157 ~~~gr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~-~ 218 (1355)
.++|.+++++.+.-.+.. ...+-|.++|++|+|||++|+.++..... .| +...++..+. .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~--~fi~vdat~~~e~g~vG 90 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKFTEVGYVG 90 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC--eEEEeecceeecCCccc
Confidence 467888887777655441 12367899999999999999999998642 23 3322222222 2
Q ss_pred CCHHHHHHHHHHhh
Q 000679 219 PDLQTIQNKLSSDL 232 (1355)
Q Consensus 219 ~~~~~~~~~i~~~l 232 (1355)
.+.+.+.+.+....
T Consensus 91 ~dvE~i~r~l~e~A 104 (441)
T TIGR00390 91 RDVESMVRDLTDAA 104 (441)
T ss_pred CCHHHHHHHHHHHH
Confidence 25666666665443
No 391
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.00 E-value=0.67 Score=51.56 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=36.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHh
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSD 231 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 231 (1355)
..++.|.|.+|+||||+|.+++...... +=..++|+++.. +..++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~-~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQ-HGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHh-cCceEEEEEccc--CHHHHHHHHHHH
Confidence 3588999999999999999998776422 124678887655 345566555443
No 392
>PRK08149 ATP synthase SpaL; Validated
Probab=92.97 E-value=0.3 Score=56.69 Aligned_cols=90 Identities=17% Similarity=0.277 Sum_probs=53.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCC-CHHHHHHHHHHhhccc-----c-ccCCCHH-----
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP-DLQTIQNKLSSDLELE-----F-KQNENVF----- 243 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-----~-~~~~~~~----- 243 (1355)
+...++|+|..|+|||||++.++.... -+.++...+.... ++.++........... . .......
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 346899999999999999999887542 3444445555443 4556666665532211 0 0011111
Q ss_pred -HHHHHHHHHHh-cCCeEEEEEeCcccc
Q 000679 244 -QRAEKLRQRLK-NVKRVLVILDNIWKL 269 (1355)
Q Consensus 244 -~~~~~l~~~l~-~~k~~LlvlDdv~~~ 269 (1355)
.....+.++++ ++|++|+++||+...
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 12223444443 379999999998654
No 393
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.92 E-value=0.091 Score=54.81 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=23.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHH
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
+.++|+|+|++|+||||+|+.++...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998765
No 394
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=92.92 E-value=0.33 Score=51.88 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=24.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhh
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1355)
+..++|||+.|.|||-+|+.|+....+
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg~ 192 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMGV 192 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcCC
Confidence 468899999999999999999988753
No 395
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=92.91 E-value=1.7 Score=46.60 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhh
Q 000679 179 MIGVYGVNGVGKTTLVKQIAMQVIE 203 (1355)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1355)
+|+|.|.+|+||||+|+.+....+.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999987753
No 396
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=92.91 E-value=0.34 Score=56.35 Aligned_cols=90 Identities=19% Similarity=0.283 Sum_probs=49.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhh-----ccccccCCCHHH------H
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDL-----ELEFKQNENVFQ------R 245 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l-----~~~~~~~~~~~~------~ 245 (1355)
-.+++|+|..|+|||||++.++.... ....++|..--...++.++........ ..-....+.... .
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 35899999999999999998876542 122344432223334444444333322 111111122211 1
Q ss_pred HHHHHHHHh-cCCeEEEEEeCcccc
Q 000679 246 AEKLRQRLK-NVKRVLVILDNIWKL 269 (1355)
Q Consensus 246 ~~~l~~~l~-~~k~~LlvlDdv~~~ 269 (1355)
.-.+.++++ +++++|+++||+...
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchHHH
Confidence 222444443 369999999998654
No 397
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=92.89 E-value=0.44 Score=52.97 Aligned_cols=57 Identities=18% Similarity=0.313 Sum_probs=41.0
Q ss_pred HHHHhh-cCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCC-HHHHHHHH
Q 000679 168 IMEVLK-DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD-LQTIQNKL 228 (1355)
Q Consensus 168 l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i 228 (1355)
+++.+. -.+-..++|.|..|+|||+|++++++.. +-+.++++-+++..+ +.++++++
T Consensus 147 vID~l~Pi~kGqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 147 VLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred hhhccccccCCCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHH
Confidence 344443 1233589999999999999999998863 346788998887654 56666654
No 398
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=92.87 E-value=0.26 Score=55.06 Aligned_cols=87 Identities=29% Similarity=0.343 Sum_probs=56.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhcccccc-CCCHHHHHHHHHHHHhc
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQ-NENVFQRAEKLRQRLKN 255 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~~ 255 (1355)
-.+|.|-|-+|||||||.-+++.+...+. .++||+--+. ..++ +--++.++...+. .--.+..++.+.+.+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEES--~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEES--LQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCcC--HHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 46899999999999999999999986443 7777764443 2222 1223455433222 01122335566667766
Q ss_pred CCeEEEEEeCcccc
Q 000679 256 VKRVLVILDNIWKL 269 (1355)
Q Consensus 256 ~k~~LlvlDdv~~~ 269 (1355)
.+.-++|+|-+...
T Consensus 167 ~~p~lvVIDSIQT~ 180 (456)
T COG1066 167 EKPDLVVIDSIQTL 180 (456)
T ss_pred cCCCEEEEecccee
Confidence 68899999998643
No 399
>PRK00625 shikimate kinase; Provisional
Probab=92.86 E-value=0.085 Score=53.47 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 000679 179 MIGVYGVNGVGKTTLVKQIAMQVI 202 (1355)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1355)
.|.++||.|+||||+|+.+++...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999988763
No 400
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=92.83 E-value=0.2 Score=61.56 Aligned_cols=79 Identities=13% Similarity=0.126 Sum_probs=58.8
Q ss_pred CCccccchhHHHHHHHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhh
Q 000679 153 TAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDL 232 (1355)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 232 (1355)
.....++|.++.++.+...+... +.+.++|++|+||||+|+.+++... ..+++..+|..- ...+..++++.++.++
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~-~~~~~~~~~~~n-p~~~~~~~~~~v~~~~ 103 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP-KEELQDILVYPN-PEDPNNPKIRTVPAGK 103 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC-hHhHHHheEeeC-CCcchHHHHHHHHHhc
Confidence 34456889988888887766554 4789999999999999999998753 334677888655 4446777888887766
Q ss_pred ccc
Q 000679 233 ELE 235 (1355)
Q Consensus 233 ~~~ 235 (1355)
+..
T Consensus 104 G~~ 106 (637)
T PRK13765 104 GKQ 106 (637)
T ss_pred CHH
Confidence 643
No 401
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.83 E-value=0.25 Score=51.79 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=25.3
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 000679 174 DTNVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1355)
Q Consensus 174 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1355)
..+..+|+|+|++|+||||+|+.+.....
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34568999999999999999999998764
No 402
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.81 E-value=0.023 Score=56.70 Aligned_cols=69 Identities=19% Similarity=0.288 Sum_probs=49.6
Q ss_pred eccCccceeEeccCCCcceecccCCCCccccCCCcEEEEecCCCCCCCcchhHHhhcCCCCEEEEeccCCce
Q 000679 1183 VGFHDIKDLKLSQFPHLKEIWHGQALNVSIFSNLRSLGVDNCTNMSSAIPANLLRCLNNLERLKVRNCDSLE 1254 (1355)
Q Consensus 1183 ~~l~~L~~L~l~~c~~l~~l~~~~p~~~~~l~~L~~L~l~~C~~l~~l~p~~~l~~l~sL~~L~i~~C~~l~ 1254 (1355)
.++++++.|.+.+|..+.+-.-+...+ -.++|+.|+|++|++|++- .-.++..+++|+.|.|.+-+.+.
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~--~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGG--LAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcc--cccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchhhh
Confidence 367788888888888776543221111 3589999999999999985 45677888888888888766443
No 403
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=92.78 E-value=0.6 Score=54.32 Aligned_cols=90 Identities=18% Similarity=0.236 Sum_probs=54.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCC-HHHHHHHHHHhhcccc------ccCCCHHH----
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD-LQTIQNKLSSDLELEF------KQNENVFQ---- 244 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~------~~~~~~~~---- 244 (1355)
....++|+|..|+|||||++.+++... .+.++++-+++... +.++.+..+..-+... ..+.....
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 346889999999999999999987653 35566677776654 4455544443321110 00111111
Q ss_pred --HHHHHHHHHh-cCCeEEEEEeCcccc
Q 000679 245 --RAEKLRQRLK-NVKRVLVILDNIWKL 269 (1355)
Q Consensus 245 --~~~~l~~~l~-~~k~~LlvlDdv~~~ 269 (1355)
..-.+.++++ +++++|+++||+...
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 1223445553 379999999998654
No 404
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=92.72 E-value=0.054 Score=56.59 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=22.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHH
Q 000679 178 GMIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
++++|.|+.|.||||+.+.+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 799999999999999999998655
No 405
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=92.71 E-value=1.1 Score=57.18 Aligned_cols=46 Identities=13% Similarity=0.255 Sum_probs=36.7
Q ss_pred cccchhHHHHHHHHHHhh--cCCceEEEEEecCCCcHHHHHHHHHHHH
Q 000679 156 EQFDSRMKIFQNIMEVLK--DTNVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 156 ~~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
..++|+...+..+.+.+. .....-|.|+|..|+|||++|+.+++..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 357888888888776665 2344578999999999999999998864
No 406
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.69 E-value=0.2 Score=50.65 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=20.0
Q ss_pred EEEEecCCCcHHHHHHHHHHHH
Q 000679 180 IGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 180 i~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
|.|+|++|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999875
No 407
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.67 E-value=0.36 Score=51.40 Aligned_cols=122 Identities=18% Similarity=0.128 Sum_probs=68.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCC-----CCCHHHHHHHHHHhhcccccc------CCCHHH
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQ-----TPDLQTIQNKLSSDLELEFKQ------NENVFQ 244 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-----~~~~~~~~~~i~~~l~~~~~~------~~~~~~ 244 (1355)
+..++++||.+|.||||+|+.+..-... -.+.+++.-.+ .....+-..++++.++..... .-+..+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~p---t~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEP---TSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCC---CCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 3469999999999999999999986642 23334333111 112334455556665533211 111111
Q ss_pred H-HHHHHHHHhcCCeEEEEEeCccccccc---cccCCCCCCccccCCCCCCCcEEEEEeCchhhhh
Q 000679 245 R-AEKLRQRLKNVKRVLVILDNIWKLLNL---DAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLC 306 (1355)
Q Consensus 245 ~-~~~l~~~l~~~k~~LlvlDdv~~~~~~---~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~ 306 (1355)
+ --.+.+.|.- ++-++|.|.--+..+. ..+...+.+ +....|-..+..|.+-.|+.
T Consensus 115 rQRi~IARALal-~P~liV~DEpvSaLDvSiqaqIlnLL~d-----lq~~~~lt~lFIsHDL~vv~ 174 (268)
T COG4608 115 RQRIGIARALAL-NPKLIVADEPVSALDVSVQAQILNLLKD-----LQEELGLTYLFISHDLSVVR 174 (268)
T ss_pred hhhHHHHHHHhh-CCcEEEecCchhhcchhHHHHHHHHHHH-----HHHHhCCeEEEEEEEHHhhh
Confidence 1 2234555553 8899999987655322 111111111 01345667888898888875
No 408
>PRK04040 adenylate kinase; Provisional
Probab=92.62 E-value=0.11 Score=53.61 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=22.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHh
Q 000679 178 GMIGVYGVNGVGKTTLVKQIAMQVI 202 (1355)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1355)
.+|+|+|++|+||||+++.+.....
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999998763
No 409
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=92.61 E-value=0.52 Score=49.65 Aligned_cols=95 Identities=23% Similarity=0.274 Sum_probs=59.4
Q ss_pred CCccccchhHHHHHHHHHHhh----c---------CCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCC
Q 000679 153 TAYEQFDSRMKIFQNIMEVLK----D---------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP 219 (1355)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~ 219 (1355)
..+.++-|-+..+++|.+... . ...+-|-++|.+|.|||-||++|+|.-... |=.+
T Consensus 182 Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSAT--FlRv--------- 250 (440)
T KOG0726|consen 182 ETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSAT--FLRV--------- 250 (440)
T ss_pred hhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchh--hhhh---------
Confidence 344567788888888887764 1 234667789999999999999999976432 4211
Q ss_pred CHHHHHHHHHH-hhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCcccc
Q 000679 220 DLQTIQNKLSS-DLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL 269 (1355)
Q Consensus 220 ~~~~~~~~i~~-~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 269 (1355)
+-.++++ .++ +-..+++++.+.-...-+-.+.+|.++..
T Consensus 251 ----vGseLiQkylG-------dGpklvRqlF~vA~e~apSIvFiDEIdAi 290 (440)
T KOG0726|consen 251 ----VGSELIQKYLG-------DGPKLVRELFRVAEEHAPSIVFIDEIDAI 290 (440)
T ss_pred ----hhHHHHHHHhc-------cchHHHHHHHHHHHhcCCceEEeehhhhh
Confidence 1112222 222 12234555555555556777888887543
No 410
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=92.60 E-value=1.8 Score=47.52 Aligned_cols=38 Identities=11% Similarity=0.220 Sum_probs=29.1
Q ss_pred HHHHHHHhhcCC-ceEEEEEecCCCcHHHHHHHHHHHHh
Q 000679 165 FQNIMEVLKDTN-VGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1355)
Q Consensus 165 ~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1355)
-+++...+..+. ....-++|+.|+||+++|..++...-
T Consensus 6 ~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~ll 44 (290)
T PRK05917 6 WEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLIL 44 (290)
T ss_pred HHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHh
Confidence 455666666544 35677999999999999999988763
No 411
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.59 E-value=1.3 Score=49.07 Aligned_cols=27 Identities=41% Similarity=0.415 Sum_probs=23.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHh
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1355)
..+-|-++|++|.|||-+|++++.+..
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeag 152 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEAG 152 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHcC
Confidence 346788999999999999999999874
No 412
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=92.57 E-value=0.37 Score=51.46 Aligned_cols=98 Identities=21% Similarity=0.251 Sum_probs=57.1
Q ss_pred cchhHHHHHHHHHHhh-------cCCceEEEEEecCCCcHHHHHHHHHHHHhhhc-CCCEEE-EEEeCCCCCHHHHHHHH
Q 000679 158 FDSRMKIFQNIMEVLK-------DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDK-LFDKVV-FVEVTQTPDLQTIQNKL 228 (1355)
Q Consensus 158 ~~gr~~~~~~l~~~L~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~-wv~~s~~~~~~~~~~~i 228 (1355)
++|..-..+.++..+. ..+.=+++.+|..|+||...|+.+++...... +-+.|- +|..-+-+....+.
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie--- 160 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIE--- 160 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHH---
Confidence 4576666677777665 13456899999999999999999998764321 101110 11111111111110
Q ss_pred HHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCcccc
Q 000679 229 SSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL 269 (1355)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 269 (1355)
.-.+++..+++...+.-+|-|+|+|+|+..
T Consensus 161 -----------~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 161 -----------DYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred -----------HHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 112334444555555459999999999876
No 413
>COG4240 Predicted kinase [General function prediction only]
Probab=92.55 E-value=0.88 Score=46.37 Aligned_cols=58 Identities=17% Similarity=0.245 Sum_probs=43.5
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhh
Q 000679 174 DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDL 232 (1355)
Q Consensus 174 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 232 (1355)
.++.-+++|.|+-|.||||++..+++....+.. ..++..++.+-+-...-...++++.
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~ 104 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQV 104 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhc
Confidence 345679999999999999999999999876543 4777777766655555555666664
No 414
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=92.54 E-value=0.12 Score=56.37 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=20.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhh
Q 000679 178 GMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1355)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1355)
+.|.|.|.+|+||||+|+.+......
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 46899999999999999999998764
No 415
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=92.53 E-value=0.49 Score=55.53 Aligned_cols=93 Identities=20% Similarity=0.161 Sum_probs=58.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCC--CEEEEEEeCCCCC-HHHHHHHHHHhhcccc------ccCCCHH----
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLF--DKVVFVEVTQTPD-LQTIQNKLSSDLELEF------KQNENVF---- 243 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~------~~~~~~~---- 243 (1355)
-..++|.|..|+|||||+..+.+.....+.+ ..++++-+++... +.++.+.+...-.... .......
T Consensus 141 GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~ 220 (458)
T TIGR01041 141 GQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIV 220 (458)
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHH
Confidence 3578999999999999999999876432111 1677788877654 5666666654321110 0111111
Q ss_pred --HHHHHHHHHHh--cCCeEEEEEeCcccc
Q 000679 244 --QRAEKLRQRLK--NVKRVLVILDNIWKL 269 (1355)
Q Consensus 244 --~~~~~l~~~l~--~~k~~LlvlDdv~~~ 269 (1355)
...-.+.++++ +++++|+++||+..-
T Consensus 221 a~~~a~tiAEyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 221 TPRMALTAAEYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred HHHHHHHHHHHHHHccCCcEEEEEcChhHH
Confidence 12234666676 479999999998654
No 416
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.52 E-value=0.13 Score=56.57 Aligned_cols=88 Identities=16% Similarity=0.286 Sum_probs=47.7
Q ss_pred HHHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHH
Q 000679 166 QNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQR 245 (1355)
Q Consensus 166 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 245 (1355)
..+++.+...+ +-+.++|+.|+|||++++........ ..| .+.-++.+...+...+++.+-..+......
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~~-~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~------- 92 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLDS-DKY-LVITINFSAQTTSNQLQKIIESKLEKRRGR------- 92 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCSTT-CCE-EEEEEES-TTHHHHHHHHCCCTTECECTTE-------
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCCc-ccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCCC-------
Confidence 44555555544 56799999999999999998865432 111 233445555444444433222222110000
Q ss_pred HHHHHHHH--hcCCeEEEEEeCcccc
Q 000679 246 AEKLRQRL--KNVKRVLVILDNIWKL 269 (1355)
Q Consensus 246 ~~~l~~~l--~~~k~~LlvlDdv~~~ 269 (1355)
.+ ..+|+.++.+||+--.
T Consensus 93 ------~~gP~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 93 ------VYGPPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp ------EEEEESSSEEEEEEETTT-S
T ss_pred ------CCCCCCCcEEEEEecccCCC
Confidence 00 1258889999998543
No 417
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.47 E-value=0.21 Score=54.43 Aligned_cols=36 Identities=19% Similarity=0.238 Sum_probs=30.2
Q ss_pred HHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 000679 167 NIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1355)
Q Consensus 167 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1355)
+..+++.+.+..+|.|+|.+|+|||||+..+.+...
T Consensus 94 ~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~ 129 (290)
T PRK10463 94 RNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLK 129 (290)
T ss_pred HHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344555567889999999999999999999999864
No 418
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.43 E-value=0.91 Score=48.98 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=30.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCC
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQ 217 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 217 (1355)
...++.|.|.+|+||||+|.+++..... .-+.++|++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~--~g~~~~~is~e~ 58 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLR--DGDPVIYVTTEE 58 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHh--cCCeEEEEEccC
Confidence 3479999999999999999988765432 235788887644
No 419
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.42 E-value=1.2 Score=50.24 Aligned_cols=28 Identities=43% Similarity=0.481 Sum_probs=25.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhh
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1355)
+..+|+++|++|+||||++..++...+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~ 140 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKA 140 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4689999999999999999999988763
No 420
>PRK06936 type III secretion system ATPase; Provisional
Probab=92.41 E-value=0.47 Score=55.10 Aligned_cols=90 Identities=18% Similarity=0.326 Sum_probs=55.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCC-HHHHHHHHHHhhccc------cccCCCHHHH---
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD-LQTIQNKLSSDLELE------FKQNENVFQR--- 245 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~------~~~~~~~~~~--- 245 (1355)
+...++|.|..|+|||||.+.+++... -+.++++-+++... +.++.+..+..-+.. ..........
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 346899999999999999999988653 36778888887653 455554433321110 0011111111
Q ss_pred ---HHHHHHHHh-cCCeEEEEEeCcccc
Q 000679 246 ---AEKLRQRLK-NVKRVLVILDNIWKL 269 (1355)
Q Consensus 246 ---~~~l~~~l~-~~k~~LlvlDdv~~~ 269 (1355)
.-.+.++++ +++++|+++||+..-
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 223444443 379999999998654
No 421
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.40 E-value=0.62 Score=55.93 Aligned_cols=49 Identities=20% Similarity=0.256 Sum_probs=35.9
Q ss_pred ccccchhHHHHHH---HHHHhhcCC---------ceEEEEEecCCCcHHHHHHHHHHHHhh
Q 000679 155 YEQFDSRMKIFQN---IMEVLKDTN---------VGMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1355)
Q Consensus 155 ~~~~~gr~~~~~~---l~~~L~~~~---------~~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1355)
..++.|.++++++ +++.|.++. ++=|..+|++|.|||.||++++.+..+
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~V 209 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV 209 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCC
Confidence 3455677665554 555565432 456889999999999999999998765
No 422
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=92.38 E-value=0.61 Score=54.07 Aligned_cols=93 Identities=19% Similarity=0.167 Sum_probs=58.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhh--cCCC---------EEEEEEeCCCCCHHHHHHHHHHhhc-ccc------cc
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIED--KLFD---------KVVFVEVTQTPDLQTIQNKLSSDLE-LEF------KQ 238 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~---------~~~wv~~s~~~~~~~~~~~i~~~l~-~~~------~~ 238 (1355)
-..++|.|-+|+|||||+..+.+..... .-.| .++++-+++.....+.+...+..-+ ... ..
T Consensus 141 GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~ats 220 (466)
T TIGR01040 141 GQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLA 220 (466)
T ss_pred CCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECC
Confidence 3578999999999999999998876410 0012 6778888888665555555554433 110 00
Q ss_pred CCCHHH------HHHHHHHHHh--cCCeEEEEEeCcccc
Q 000679 239 NENVFQ------RAEKLRQRLK--NVKRVLVILDNIWKL 269 (1355)
Q Consensus 239 ~~~~~~------~~~~l~~~l~--~~k~~LlvlDdv~~~ 269 (1355)
...... ..-.+.++++ +++++|+++||+..-
T Consensus 221 d~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~ 259 (466)
T TIGR01040 221 NDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSY 259 (466)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHH
Confidence 111111 1223566666 379999999998543
No 423
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.37 E-value=0.14 Score=51.39 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=24.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhh
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1355)
...+++|+|..|+|||||++.+......
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4579999999999999999999988754
No 424
>PRK00131 aroK shikimate kinase; Reviewed
Probab=92.34 E-value=0.12 Score=53.03 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=23.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHH
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
...|.++|++|+||||+|+.++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999986
No 425
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.32 E-value=0.098 Score=53.54 Aligned_cols=23 Identities=39% Similarity=0.647 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 000679 179 MIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
+|+|.|.+|+||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 426
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.25 E-value=0.12 Score=52.60 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=21.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 000679 179 MIGVYGVNGVGKTTLVKQIAMQVI 202 (1355)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1355)
.|.|.|++|+||||+|+.+.+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999853
No 427
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=92.25 E-value=6.6 Score=49.41 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHH
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
....|+|+|..|+||||||+.+..-.
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999997654
No 428
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=92.24 E-value=0.82 Score=55.79 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=37.8
Q ss_pred cccchhHHHHHHHHHHhh--cCCceEEEEEecCCCcHHHHHHHHHHHH
Q 000679 156 EQFDSRMKIFQNIMEVLK--DTNVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 156 ~~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
..++|+...++++.+.+. .....-|.|+|..|+|||++|+.+++..
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s 234 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAAS 234 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 457888888888887776 3345678999999999999999999874
No 429
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=92.21 E-value=0.27 Score=49.81 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=32.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCC
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD 220 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 220 (1355)
..++.+.|+.|+|||.+|+.++..... +.....+-++.+...+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccc
Confidence 467889999999999999999998753 2345666677665444
No 430
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=92.18 E-value=0.18 Score=52.54 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=24.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhh
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIED 204 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 204 (1355)
+..+|.++||+|.||||..+.++.+...+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~ 46 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAK 46 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhc
Confidence 45678899999999999999999987654
No 431
>PTZ00088 adenylate kinase 1; Provisional
Probab=92.17 E-value=0.21 Score=53.21 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 000679 179 MIGVYGVNGVGKTTLVKQIAMQVI 202 (1355)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1355)
.|.|.|++|+||||+|+.++....
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999998763
No 432
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.14 E-value=0.29 Score=54.66 Aligned_cols=49 Identities=27% Similarity=0.388 Sum_probs=37.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHH
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNK 227 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 227 (1355)
.+++.+.|.||+||||+|.+.+-...... ..++-|+.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999999777665433 45777777777776666544
No 433
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.12 E-value=0.1 Score=54.94 Aligned_cols=23 Identities=43% Similarity=0.712 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 000679 179 MIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
+|+|.|++|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 434
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.11 E-value=0.042 Score=54.89 Aligned_cols=71 Identities=17% Similarity=0.282 Sum_probs=57.0
Q ss_pred cccCCcccceeccccccccchhcccCCCCCCCCCCccEEEEecCCCcccccchhhHHhcccccEEEEccccchh
Q 000679 803 CCKVFPLLESLSLCRLFNLEKICHNRLHEDESFSNLRIIKVGECDKLRHLFSFSMAKNLLRLQKISVFDCKSLE 876 (1355)
Q Consensus 803 ~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~ 876 (1355)
....+++++.|.+.+|..+.+|+-+.+. +-.++|+.|+|++|+.+++-- ...+..+++|+.|.+.+.+.+.
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~--~~~~~L~~L~lsgC~rIT~~G-L~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLG--GLAPSLQDLDLSGCPRITDGG-LACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhc--ccccchheeeccCCCeechhH-HHHHHHhhhhHHHHhcCchhhh
Confidence 3455788899999999999999877664 378999999999999988743 2457888999999998876554
No 435
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.10 E-value=0.12 Score=53.21 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=22.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHh
Q 000679 178 GMIGVYGVNGVGKTTLVKQIAMQVI 202 (1355)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1355)
.+++|+|+.|+||||+|+.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988753
No 436
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=92.07 E-value=0.11 Score=53.98 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 000679 179 MIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
+|.|+|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998875
No 437
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.07 E-value=0.17 Score=50.91 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=60.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCC--CHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHh
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP--DLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK 254 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 254 (1355)
..+++|+|..|.|||||++.+..... ...+.+++.-.... .... ....++.-..- ..-....-.+.+.+.
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~~~~~----~~~~i~~~~ql-S~G~~~r~~l~~~l~ 96 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLPLEE----LRRRIGYVPQL-SGGQRQRVALARALL 96 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccCCHHH----HHhceEEEeeC-CHHHHHHHHHHHHHh
Confidence 36999999999999999999987653 24555554322111 1111 11112211101 111222333555555
Q ss_pred cCCeEEEEEeCcccccc---ccccCCCCCCccccCCCCCCCcEEEEEeCchhhhh
Q 000679 255 NVKRVLVILDNIWKLLN---LDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLC 306 (1355)
Q Consensus 255 ~~k~~LlvlDdv~~~~~---~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~ 306 (1355)
. ..-++++|+....-+ ...+...+.. . ...+..++++|.+.....
T Consensus 97 ~-~~~i~ilDEp~~~lD~~~~~~l~~~l~~----~--~~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 97 L-NPDLLLLDEPTSGLDPASRERLLELLRE----L--AEEGRTVIIVTHDPELAE 144 (157)
T ss_pred c-CCCEEEEeCCCcCCCHHHHHHHHHHHHH----H--HHCCCEEEEEeCCHHHHH
Confidence 4 677889998765422 2222111111 0 122567888888876654
No 438
>PRK06851 hypothetical protein; Provisional
Probab=92.06 E-value=2.1 Score=48.85 Aligned_cols=44 Identities=27% Similarity=0.265 Sum_probs=34.2
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCC
Q 000679 174 DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQT 218 (1355)
Q Consensus 174 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 218 (1355)
++-.+++.|.|.+|+||||+++.++..... +.++..++-|.+.+
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~~-~G~~v~~~hC~~dP 254 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAEE-RGFDVEVYHCGFDP 254 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHHHh-CCCeEEEEeCCCCC
Confidence 445588999999999999999999998864 45666666555444
No 439
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.06 E-value=0.24 Score=56.92 Aligned_cols=112 Identities=15% Similarity=0.184 Sum_probs=61.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhc
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKN 255 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 255 (1355)
....|.|.|+.|.||||+++.+.+... ......++. +.+.... ..... ..+-...............++..++.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~--~~~~~~i~t-iEdp~E~--~~~~~-~~~i~q~evg~~~~~~~~~l~~~lr~ 194 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYIN--KNAAGHIIT-IEDPIEY--VHRNK-RSLINQREVGLDTLSFANALRAALRE 194 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhC--cCCCCEEEE-EcCChhh--hccCc-cceEEccccCCCCcCHHHHHHHhhcc
Confidence 347899999999999999999887653 234444443 2222111 10000 00000000011122344556666765
Q ss_pred CCeEEEEEeCccccccccccCCCCCCccccCCCCCCCcEEEEEeCchhh
Q 000679 256 VKRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDV 304 (1355)
Q Consensus 256 ~k~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v 304 (1355)
.+=.|++|.+.+.+.+...... ...|..|+.|.....+
T Consensus 195 -~pd~i~vgEird~~~~~~~l~a----------a~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 195 -DPDVILIGEMRDLETVELALTA----------AETGHLVFGTLHTNSA 232 (343)
T ss_pred -CCCEEEEeCCCCHHHHHHHHHH----------HHcCCcEEEEEcCCCH
Confidence 7788999999887766542221 3445557777666544
No 440
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=92.02 E-value=0.23 Score=56.23 Aligned_cols=46 Identities=22% Similarity=0.320 Sum_probs=38.9
Q ss_pred cccchhHHHHHHHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHH
Q 000679 156 EQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 156 ~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
..++|.++.+..++-.+.++...-+.|.|..|+||||+++.+..-.
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 4578999998888777777666778899999999999999998765
No 441
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=91.94 E-value=0.45 Score=55.16 Aligned_cols=45 Identities=18% Similarity=0.114 Sum_probs=34.4
Q ss_pred ccchhHHHHHHHHHHhh-------c----C-------CceEEEEEecCCCcHHHHHHHHHHHH
Q 000679 157 QFDSRMKIFQNIMEVLK-------D----T-------NVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 157 ~~~gr~~~~~~l~~~L~-------~----~-------~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
.++|.++.++.+...+. . . ....|.++|++|+|||++|+.++...
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
Confidence 36798888887765551 1 0 12578999999999999999999765
No 442
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=91.92 E-value=0.36 Score=55.17 Aligned_cols=76 Identities=20% Similarity=0.206 Sum_probs=48.5
Q ss_pred ccchhHHHHHHHHHHhhc--------------CCceEEEEEecCCCcHHHHHHHHHHHHhhh-cCCCEEEEEEeCC-CCC
Q 000679 157 QFDSRMKIFQNIMEVLKD--------------TNVGMIGVYGVNGVGKTTLVKQIAMQVIED-KLFDKVVFVEVTQ-TPD 220 (1355)
Q Consensus 157 ~~~gr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~s~-~~~ 220 (1355)
.++|.+++++.+..++.. ...+.|.++|+.|+|||++|+.++...... -++|...|...+- ..+
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 467888888888777642 013678999999999999999999876421 1123332322221 225
Q ss_pred HHHHHHHHHHhh
Q 000679 221 LQTIQNKLSSDL 232 (1355)
Q Consensus 221 ~~~~~~~i~~~l 232 (1355)
.+.+.+.+....
T Consensus 96 ~e~~ir~L~~~A 107 (443)
T PRK05201 96 VESIIRDLVEIA 107 (443)
T ss_pred HHHHHHHHHHHH
Confidence 566666665544
No 443
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=91.88 E-value=0.59 Score=55.09 Aligned_cols=92 Identities=22% Similarity=0.207 Sum_probs=59.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhh---cCCCEEEEEEeCCCCC-HHHHHHHHHHhhcccc------ccCCCHH---
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIED---KLFDKVVFVEVTQTPD-LQTIQNKLSSDLELEF------KQNENVF--- 243 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~------~~~~~~~--- 243 (1355)
-..++|.|..|+|||||+..+.+..... ..+ .++++-+++... +.++.+.+...=.... .......
T Consensus 143 GQR~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~-v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~ 221 (460)
T PRK04196 143 GQKLPIFSGSGLPHNELAAQIARQAKVLGEEENF-AVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERI 221 (460)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHhhhhccCCCce-EEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHH
Confidence 3578999999999999999999876432 111 677888887654 5667776665321110 0011111
Q ss_pred ---HHHHHHHHHHh--cCCeEEEEEeCcccc
Q 000679 244 ---QRAEKLRQRLK--NVKRVLVILDNIWKL 269 (1355)
Q Consensus 244 ---~~~~~l~~~l~--~~k~~LlvlDdv~~~ 269 (1355)
...-.+.++++ +++++|+++||+...
T Consensus 222 ~a~~~a~tiAEyfr~d~G~~VLli~DslTR~ 252 (460)
T PRK04196 222 LTPRMALTAAEYLAFEKGMHVLVILTDMTNY 252 (460)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEcChHHH
Confidence 12334666766 479999999998654
No 444
>PRK06217 hypothetical protein; Validated
Probab=91.86 E-value=0.13 Score=53.24 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=26.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhhhcCC--CEEEEE
Q 000679 179 MIGVYGVNGVGKTTLVKQIAMQVIEDKLF--DKVVFV 213 (1355)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv 213 (1355)
.|.|.|.+|+||||+|+++...... .+| |..+|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~-~~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI-PHLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC-cEEEcCceeec
Confidence 5899999999999999999987642 233 455563
No 445
>CHL00206 ycf2 Ycf2; Provisional
Probab=91.84 E-value=0.68 Score=62.13 Aligned_cols=26 Identities=35% Similarity=0.355 Sum_probs=23.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHh
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1355)
.+-|.++|++|+|||.||++++.+..
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhcC
Confidence 46788999999999999999999864
No 446
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=91.77 E-value=0.25 Score=59.32 Aligned_cols=51 Identities=24% Similarity=0.346 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHhhc-----CCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEe
Q 000679 161 RMKIFQNIMEVLKD-----TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEV 215 (1355)
Q Consensus 161 r~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 215 (1355)
-.+-++++..||.+ ...+++.+.|++|+||||.++.++++.. |+.+-|.+-
T Consensus 24 hkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~np 79 (519)
T PF03215_consen 24 HKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWINP 79 (519)
T ss_pred cHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecCC
Confidence 34457888888872 2357899999999999999999998863 777778754
No 447
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=91.77 E-value=0.56 Score=56.68 Aligned_cols=87 Identities=13% Similarity=0.277 Sum_probs=55.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhcccccc---------------CC
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQ---------------NE 240 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---------------~~ 240 (1355)
...++.|.|++|+|||||+.+++.....+ =..++|++.-+ +..++.+.. +.++.+... ..
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccC
Confidence 44799999999999999999998876432 35677776544 344454443 444432211 11
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEEeCcc
Q 000679 241 NVFQRAEKLRQRLKNVKRVLVILDNIW 267 (1355)
Q Consensus 241 ~~~~~~~~l~~~l~~~k~~LlvlDdv~ 267 (1355)
..++.+..+.+.+.+.+.-.+|+|.+.
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 235566666666665455577888764
No 448
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=91.76 E-value=0.31 Score=62.00 Aligned_cols=183 Identities=18% Similarity=0.255 Sum_probs=90.2
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHHh-hh-c------------CCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCC
Q 000679 175 TNVGMIGVYGVNGVGKTTLVKQIAMQVI-ED-K------------LFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNE 240 (1355)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~-~------------~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~ 240 (1355)
.+.+++.|.|+.+.||||+.+.+.-..- .+ . .|+. ++..++...++..-...+..
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~-i~~~ig~~~si~~~lStfS~---------- 393 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKE-IFADIGDEQSIEQSLSTFSG---------- 393 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccce-EEEecCCccchhhchhHHHH----------
Confidence 3457899999999999999999875421 01 1 1121 22333322222211111111
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEEeCcccccccc---ccCCCCCCccccCCCCCCCcEEEEEeCchhhhhhcCCCcc--eE
Q 000679 241 NVFQRAEKLRQRLKNVKRVLVILDNIWKLLNLD---AVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCNDMNSQK--FF 315 (1355)
Q Consensus 241 ~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~---~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~~~~~~~--~~ 315 (1355)
.......+...+ .++-|+++|..-...+.. .+...+ +..+ ...|+.+|+||...+++........ ..
T Consensus 394 -~m~~~~~Il~~~--~~~sLvLlDE~~~GtDp~eg~ala~ai---le~l--~~~~~~vIitTH~~el~~~~~~~~~v~~~ 465 (782)
T PRK00409 394 -HMTNIVRILEKA--DKNSLVLFDELGAGTDPDEGAALAISI---LEYL--RKRGAKIIATTHYKELKALMYNREGVENA 465 (782)
T ss_pred -HHHHHHHHHHhC--CcCcEEEecCCCCCCCHHHHHHHHHHH---HHHH--HHCCCEEEEECChHHHHHHHhcCCCeEEE
Confidence 111122222223 377899999986543321 221111 0000 2357899999999877642222111 11
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHhcCChHHHHHHHHHHh
Q 000679 316 LIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANALKNKRLYVWNDSLERLR 383 (1355)
Q Consensus 316 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~w~~~l~~l~ 383 (1355)
.+.. +.+.-.-.++-..|... ...|-+|++++ |+|-.+.--|.-+-.....++..++..+.
T Consensus 466 ~~~~-d~~~l~~~Ykl~~G~~g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~ 526 (782)
T PRK00409 466 SVEF-DEETLRPTYRLLIGIPG-----KSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLE 526 (782)
T ss_pred EEEE-ecCcCcEEEEEeeCCCC-----CcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 1111 11100000000002111 23477788887 88888887777776655556777766663
No 449
>PRK13949 shikimate kinase; Provisional
Probab=91.76 E-value=0.15 Score=51.76 Aligned_cols=24 Identities=42% Similarity=0.401 Sum_probs=22.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 000679 179 MIGVYGVNGVGKTTLVKQIAMQVI 202 (1355)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1355)
.|.|+|+.|+||||+|+.++....
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998864
No 450
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=91.75 E-value=0.66 Score=45.60 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=26.8
Q ss_pred hcCCceEEEEEecCCCcHHHHHHHHHHHHhhh
Q 000679 173 KDTNVGMIGVYGVNGVGKTTLVKQIAMQVIED 204 (1355)
Q Consensus 173 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 204 (1355)
...+..+|-+.|.+|+||||+|.+++.....+
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAK 50 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHc
Confidence 34556799999999999999999999988543
No 451
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=91.74 E-value=1.3 Score=49.82 Aligned_cols=39 Identities=38% Similarity=0.688 Sum_probs=30.0
Q ss_pred HHHHHHhh--cCCceEEEEEecCCCcHHHHHHHHHHHHhhh
Q 000679 166 QNIMEVLK--DTNVGMIGVYGVNGVGKTTLVKQIAMQVIED 204 (1355)
Q Consensus 166 ~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 204 (1355)
.++++.+. ..+..+|+|.|.+|+||||++..+....+..
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 34444443 3567899999999999999999998887643
No 452
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=91.74 E-value=0.22 Score=56.10 Aligned_cols=49 Identities=22% Similarity=0.371 Sum_probs=38.6
Q ss_pred CCccccchhHHHHHHHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHH
Q 000679 153 TAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
.+...++|.+..++.+.-.+.+.+..-+.+.|..|+||||+|+.+..-.
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 3455688999988877755554455568999999999999999998764
No 453
>PLN02924 thymidylate kinase
Probab=91.72 E-value=0.67 Score=49.14 Aligned_cols=53 Identities=13% Similarity=0.083 Sum_probs=34.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHH
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSS 230 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 230 (1355)
...|+|-|..|+||||+|+.++...... .+..+.+-..+......+..+.++.
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~~l~~~-g~~v~~~~ep~~~~~~g~~ir~~l~ 68 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVSFLKGL-GVAAELWRFPDRTTSVGQMISAYLS 68 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCceeeeCCCCCChHHHHHHHHHh
Confidence 4689999999999999999999988753 3444333222222334444444443
No 454
>PRK14529 adenylate kinase; Provisional
Probab=91.71 E-value=0.46 Score=50.17 Aligned_cols=84 Identities=15% Similarity=0.084 Sum_probs=45.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhhhcCCCE--EEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcC
Q 000679 179 MIGVYGVNGVGKTTLVKQIAMQVIEDKLFDK--VVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNV 256 (1355)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (1355)
.|.|.|++|+||||+|+.++...... +.+. .+.-.+..........+.++.+-.. ...+.....+.+++.+.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~-~is~gdllr~~i~~~t~lg~~i~~~i~~G~l-----vpdei~~~lv~~~l~~~ 75 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLA-HIESGAIFREHIGGGTELGKKAKEYIDRGDL-----VPDDITIPMILETLKQD 75 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC-CcccchhhhhhccCCChHHHHHHHHHhccCc-----chHHHHHHHHHHHHhcc
Confidence 37889999999999999999887532 2221 1111122222233333333332111 22333445566666542
Q ss_pred CeEEEEEeCccc
Q 000679 257 KRVLVILDNIWK 268 (1355)
Q Consensus 257 k~~LlvlDdv~~ 268 (1355)
...-+|||..-.
T Consensus 76 ~~~g~iLDGfPR 87 (223)
T PRK14529 76 GKNGWLLDGFPR 87 (223)
T ss_pred CCCcEEEeCCCC
Confidence 244578888643
No 455
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=91.69 E-value=0.49 Score=54.97 Aligned_cols=90 Identities=21% Similarity=0.333 Sum_probs=50.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCC-CCHHHHHHHHHHhhcccc------ccCCCHHH----
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQT-PDLQTIQNKLSSDLELEF------KQNENVFQ---- 244 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~------~~~~~~~~---- 244 (1355)
....++|+|..|+|||||++.+..... .+..+.+.+.+. ..+.++.+..+..-+... ...+....
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~----~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTD----ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 346899999999999999988887542 233333334443 335555554443321110 00111111
Q ss_pred --HHHHHHHHHh-cCCeEEEEEeCcccc
Q 000679 245 --RAEKLRQRLK-NVKRVLVILDNIWKL 269 (1355)
Q Consensus 245 --~~~~l~~~l~-~~k~~LlvlDdv~~~ 269 (1355)
..-.+.++++ +++++|+++||+...
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 1223445553 369999999998654
No 456
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=91.67 E-value=0.3 Score=54.74 Aligned_cols=46 Identities=22% Similarity=0.367 Sum_probs=32.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHH
Q 000679 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQ 225 (1355)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 225 (1355)
+++.+.|-||+||||+|.+.+-....++ ..+.-++.....+..+++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCccHHHHh
Confidence 6889999999999999998888765432 235555655555554444
No 457
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=91.65 E-value=10 Score=42.76 Aligned_cols=47 Identities=21% Similarity=0.212 Sum_probs=33.8
Q ss_pred eEecCCCCHHHHHHHHHHHhCCCCCC--cchHHHHHHHHHHhCCChHHH
Q 000679 314 FFLIEVLSYEEAWCLFEKIVGDSAKA--SDFRVIADEIVRRCGGLPVAI 360 (1355)
Q Consensus 314 ~~~l~~L~~~~~~~lf~~~~~~~~~~--~~~~~~~~~i~~~c~glPLai 360 (1355)
.+++++++.+|+..++.-........ ..-+...+++....+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 78999999999999998877332221 333455667777779998643
No 458
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=91.64 E-value=0.61 Score=52.20 Aligned_cols=90 Identities=21% Similarity=0.324 Sum_probs=52.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCC-CCHHHHHHHHHHhhcccc------ccCCCHHH----
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQT-PDLQTIQNKLSSDLELEF------KQNENVFQ---- 244 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~------~~~~~~~~---- 244 (1355)
....++|+|..|+|||||++.+..... -+..+..-+... .++.++.......-+... ...+....
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 346889999999999999998887543 234444455433 345555555544322110 01111111
Q ss_pred --HHHHHHHHHh-cCCeEEEEEeCcccc
Q 000679 245 --RAEKLRQRLK-NVKRVLVILDNIWKL 269 (1355)
Q Consensus 245 --~~~~l~~~l~-~~k~~LlvlDdv~~~ 269 (1355)
..-.+.+++. ++|.+|+++||+...
T Consensus 144 ~~~a~~~AEyfr~~g~~Vll~~Dsltr~ 171 (326)
T cd01136 144 AYTATAIAEYFRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccchHH
Confidence 1222344443 379999999998543
No 459
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=91.63 E-value=0.16 Score=52.08 Aligned_cols=24 Identities=17% Similarity=0.360 Sum_probs=22.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHH
Q 000679 178 GMIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998775
No 460
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=91.61 E-value=0.3 Score=51.67 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=27.9
Q ss_pred HHhhcCCceEEEEEecCCCcHHHHHHHHHHHH
Q 000679 170 EVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 170 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
+.+.+.++++|+++|+.|+|||||..++.+..
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 44456789999999999999999999999875
No 461
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=91.61 E-value=0.14 Score=50.85 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 000679 179 MIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
+|.|.|+.|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999875
No 462
>PTZ00494 tuzin-like protein; Provisional
Probab=91.60 E-value=3.9 Score=46.56 Aligned_cols=166 Identities=14% Similarity=0.123 Sum_probs=95.0
Q ss_pred cCCccccchhHHHHHHHHHHhh---cCCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHH
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLK---DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKL 228 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 228 (1355)
+.....++.|+++-..+.+.|. -..++++++.|.-|.||++|.+........ ..++|++... ++-++.|
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~---EDtLrsV 438 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGT---EDTLRSV 438 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCC---cchHHHH
Confidence 3445568889888777777776 346789999999999999999998877642 3567888765 4457788
Q ss_pred HHhhccccccC-CCHHHHHHHHHHHH---hcCCeEEEEEe--Cccccc-cccccCCCCCCccccCCCCCCCcEEEEEeCc
Q 000679 229 SSDLELEFKQN-ENVFQRAEKLRQRL---KNVKRVLVILD--NIWKLL-NLDAVGIPFGDVKKERNDDRSRCTVLLTSRN 301 (1355)
Q Consensus 229 ~~~l~~~~~~~-~~~~~~~~~l~~~l---~~~k~~LlvlD--dv~~~~-~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~ 301 (1355)
.+.++.+.-+. -+.-+-+.+-.+.- ..++.=+||+- +-.+.. -+++. ..+.. ...-|.|++----
T Consensus 439 VKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLac-------DrRlCHvv~EVpl 510 (664)
T PTZ00494 439 VRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVS-------DCQACHIVLAVPM 510 (664)
T ss_pred HHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHc-------cchhheeeeechH
Confidence 88888765432 12222222211111 12344455542 211110 11111 11111 2334566654333
Q ss_pred hhhh--hhcCCCcceEecCCCCHHHHHHHHHHHh
Q 000679 302 RDVL--CNDMNSQKFFLIEVLSYEEAWCLFEKIV 333 (1355)
Q Consensus 302 ~~v~--~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 333 (1355)
+..- ......-..|.+..++.++|.+.-+...
T Consensus 511 ESLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 511 KALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hhhchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 2211 1123345688999999999988876543
No 463
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=91.58 E-value=0.75 Score=50.30 Aligned_cols=55 Identities=25% Similarity=0.231 Sum_probs=41.0
Q ss_pred ccccchhHHHHH---HHHHHhhcC--CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCE
Q 000679 155 YEQFDSRMKIFQ---NIMEVLKDT--NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDK 209 (1355)
Q Consensus 155 ~~~~~gr~~~~~---~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 209 (1355)
..+++|..++.+ -+++++.+. .-+.|.|+|++|.|||+||-.+++..-..-+|..
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~ 97 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVA 97 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCcee
Confidence 357888665543 355665543 4589999999999999999999999876666743
No 464
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=91.58 E-value=0.25 Score=54.45 Aligned_cols=51 Identities=16% Similarity=0.220 Sum_probs=39.4
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHH
Q 000679 175 TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLS 229 (1355)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 229 (1355)
+..+++.|+|.+|+|||++|.++...... ....++||+..+. ..++.+...
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~--~ge~vlyvs~~e~--~~~l~~~~~ 71 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAR--EGEPVLYVSTEES--PEELLENAR 71 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHh--cCCcEEEEEecCC--HHHHHHHHH
Confidence 35689999999999999999999988753 3788999988764 344444433
No 465
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=91.57 E-value=0.15 Score=52.36 Aligned_cols=24 Identities=38% Similarity=0.679 Sum_probs=22.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 000679 179 MIGVYGVNGVGKTTLVKQIAMQVI 202 (1355)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1355)
+|+|.|.+|+||||+|+.+.....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998875
No 466
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=91.56 E-value=0.13 Score=51.17 Aligned_cols=23 Identities=43% Similarity=0.648 Sum_probs=20.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 000679 179 MIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
+|.+.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998864
No 467
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.52 E-value=0.096 Score=29.78 Aligned_cols=16 Identities=31% Similarity=0.623 Sum_probs=6.4
Q ss_pred ccceeecccCCCCccc
Q 000679 606 KLEILSFRNSDIQQLP 621 (1355)
Q Consensus 606 ~L~~L~L~~~~l~~lP 621 (1355)
+|++|++++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555544
No 468
>PRK11823 DNA repair protein RadA; Provisional
Probab=91.52 E-value=0.45 Score=56.50 Aligned_cols=82 Identities=26% Similarity=0.358 Sum_probs=49.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhcccccc-----CCCHHHHHHHHHH
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQ-----NENVFQRAEKLRQ 251 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 251 (1355)
..++.|.|.+|+|||||+.+++.....+ -..++|++..+. ..++... ++.++..... ..+ ...+.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e~~----l~~i~~ 150 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAETN----LEAILA 150 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCCCC----HHHHHH
Confidence 4689999999999999999999876522 246788876543 3333222 4444432111 112 233444
Q ss_pred HHhcCCeEEEEEeCcc
Q 000679 252 RLKNVKRVLVILDNIW 267 (1355)
Q Consensus 252 ~l~~~k~~LlvlDdv~ 267 (1355)
.+.+.+.-++|+|.+.
T Consensus 151 ~i~~~~~~lVVIDSIq 166 (446)
T PRK11823 151 TIEEEKPDLVVIDSIQ 166 (446)
T ss_pred HHHhhCCCEEEEechh
Confidence 4443455678888874
No 469
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=91.51 E-value=0.23 Score=49.38 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=26.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEE
Q 000679 179 MIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVF 212 (1355)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w 212 (1355)
+++|+|+.|+||||++.++....+.+ .+...+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~-G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR-GYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEE
Confidence 58999999999999999999987643 4544433
No 470
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=91.48 E-value=0.17 Score=51.56 Aligned_cols=25 Identities=36% Similarity=0.419 Sum_probs=22.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHH
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
...|.|+|+.|+||||+|+.++...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3579999999999999999999875
No 471
>PRK05922 type III secretion system ATPase; Validated
Probab=91.45 E-value=0.83 Score=53.10 Aligned_cols=90 Identities=20% Similarity=0.262 Sum_probs=51.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCC-CHHHHHHHHHHhhcccc------ccCCCHHH----
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP-DLQTIQNKLSSDLELEF------KQNENVFQ---- 244 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~---- 244 (1355)
....++|+|..|+|||||.+.+..... .+..+++.+++.. .+.+.+.+......... ........
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a 231 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIA 231 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHH
Confidence 345799999999999999999987542 3444444454433 33444444443322111 00111111
Q ss_pred --HHHHHHHHHh-cCCeEEEEEeCcccc
Q 000679 245 --RAEKLRQRLK-NVKRVLVILDNIWKL 269 (1355)
Q Consensus 245 --~~~~l~~~l~-~~k~~LlvlDdv~~~ 269 (1355)
..-.+.++++ +|+++|+++||+..-
T Consensus 232 ~~~a~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 232 GRAAMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 1223455553 379999999998654
No 472
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=91.42 E-value=1.4 Score=45.73 Aligned_cols=50 Identities=14% Similarity=0.258 Sum_probs=36.0
Q ss_pred CccccchhHHHHHHHHH----HhhcCCceEEEEEecCCCcHHHHHHHHHHHHhh
Q 000679 154 AYEQFDSRMKIFQNIME----VLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1355)
Q Consensus 154 ~~~~~~gr~~~~~~l~~----~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1355)
+...++|-+...+.+++ ++.+-...-|.+||.-|+||+.|++++.+....
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~ 111 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYAD 111 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHh
Confidence 33456676666666554 333444567889999999999999999998753
No 473
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.41 E-value=0.41 Score=49.24 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=22.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHH
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
.-.+-+|.|+.|+||||||..+.-++
T Consensus 29 ~GEvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 29 EGEVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34688999999999999999998765
No 474
>PRK13947 shikimate kinase; Provisional
Probab=91.40 E-value=0.16 Score=51.98 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=21.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 000679 179 MIGVYGVNGVGKTTLVKQIAMQVI 202 (1355)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1355)
.|.|+|++|+||||+|+.+++...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998864
No 475
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=91.39 E-value=0.39 Score=48.98 Aligned_cols=119 Identities=18% Similarity=0.178 Sum_probs=66.6
Q ss_pred HHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHHhhh-cCCC--EEEEEEeCCCCCHHHHHHHHHHhhcccccc------
Q 000679 168 IMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIED-KLFD--KVVFVEVTQTPDLQTIQNKLSSDLELEFKQ------ 238 (1355)
Q Consensus 168 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~------ 238 (1355)
++..+-+.+..-..|.|++|+||||+.+.++.-.... +.|- .+.-|+-+. +|+..+......
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDers---------EIag~~~gvpq~~~g~R~ 198 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERS---------EIAGCLNGVPQHGRGRRM 198 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccc---------hhhccccCCchhhhhhhh
Confidence 5555556665567899999999999999998876542 2342 222232221 222211110000
Q ss_pred -CCCHHHHHHHHHHHHhcCCeEEEEEeCccccccccccCCCCCCccccCCCCCCCcEEEEEeCchhhh
Q 000679 239 -NENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVL 305 (1355)
Q Consensus 239 -~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~ 305 (1355)
-.+..-...-+....++-.+=.+|+|.+-..++-.++..+ .+.|.+++.|..-..+.
T Consensus 199 dVld~cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta----------~~~GVkli~TaHG~~ie 256 (308)
T COG3854 199 DVLDPCPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTA----------LHAGVKLITTAHGNGIE 256 (308)
T ss_pred hhcccchHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHH----------HhcCcEEEEeeccccHH
Confidence 0000011122233333346778999999887766665444 56788888887765443
No 476
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=91.37 E-value=0.17 Score=57.04 Aligned_cols=93 Identities=19% Similarity=0.182 Sum_probs=47.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHhcC
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNV 256 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (1355)
...+.|+|..|.||||+++.+....... ..++.+.-........ .....-...............+.+...++.
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~---~~iv~ied~~El~~~~--~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~- 217 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKD---ERIITIEDTREIFLPH--PNYVHLFYSKGGQGLAKVTPKDLLQSCLRM- 217 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCcc---ccEEEEcCccccCCCC--CCEEEEEecCCCCCcCccCHHHHHHHHhcC-
Confidence 4699999999999999999988765321 2233232111111100 000000000000001112233445555664
Q ss_pred CeEEEEEeCcccccccccc
Q 000679 257 KRVLVILDNIWKLLNLDAV 275 (1355)
Q Consensus 257 k~~LlvlDdv~~~~~~~~~ 275 (1355)
..=.+|+|.+.+.+.++.+
T Consensus 218 ~pd~ii~gE~r~~e~~~~l 236 (308)
T TIGR02788 218 RPDRIILGELRGDEAFDFI 236 (308)
T ss_pred CCCeEEEeccCCHHHHHHH
Confidence 6667899999987666543
No 477
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=91.36 E-value=0.48 Score=56.34 Aligned_cols=88 Identities=24% Similarity=0.285 Sum_probs=49.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHHHHHHHHHhhccccccC-CCHHHHHHHHHHHHh
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQN-ENVFQRAEKLRQRLK 254 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~l~~~l~ 254 (1355)
...++.|.|.+|+|||||+.+++....... ..++|++..+. ..++... ++.++...... .........+.+.+.
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g--~kvlYvs~EEs--~~qi~~r-a~rlg~~~~~l~~~~e~~~~~I~~~i~ 167 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQ--MKVLYVSGEES--LQQIKMR-AIRLGLPEPNLYVLSETNWEQICANIE 167 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEECcCC--HHHHHHH-HHHcCCChHHeEEcCCCCHHHHHHHHH
Confidence 347899999999999999999987764321 35778875443 3333221 23333221110 000011234444444
Q ss_pred cCCeEEEEEeCccc
Q 000679 255 NVKRVLVILDNIWK 268 (1355)
Q Consensus 255 ~~k~~LlvlDdv~~ 268 (1355)
+.+.-++|+|.+..
T Consensus 168 ~~~~~~vVIDSIq~ 181 (454)
T TIGR00416 168 EENPQACVIDSIQT 181 (454)
T ss_pred hcCCcEEEEecchh
Confidence 43556788888743
No 478
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.33 E-value=0.14 Score=52.85 Aligned_cols=24 Identities=42% Similarity=0.537 Sum_probs=21.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHH
Q 000679 178 GMIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
++|+|+|+.|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 589999999999999999999853
No 479
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.32 E-value=0.82 Score=54.59 Aligned_cols=92 Identities=22% Similarity=0.238 Sum_probs=58.9
Q ss_pred ccchhHHHHHHHHHHhhc----------C---CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCCHHH
Q 000679 157 QFDSRMKIFQNIMEVLKD----------T---NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQT 223 (1355)
Q Consensus 157 ~~~gr~~~~~~l~~~L~~----------~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 223 (1355)
++.|..+.++-+.+.+.- . ...-|.++|++|.|||-||.+++.....+ +|+|-.. +
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~-------fisvKGP----E 736 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLR-------FISVKGP----E 736 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCee-------EEEecCH----H
Confidence 344555555555555541 1 23458899999999999999999876432 4555432 2
Q ss_pred HHHHHHHhhccccccCCCHHHHHHHHHHHHhcCCeEEEEEeCcccc
Q 000679 224 IQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL 269 (1355)
Q Consensus 224 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 269 (1355)
++...+ | ..++.++.+..+-+..|++.+.+|..++.
T Consensus 737 lL~KyI---G-------aSEq~vR~lF~rA~~a~PCiLFFDEfdSi 772 (952)
T KOG0735|consen 737 LLSKYI---G-------ASEQNVRDLFERAQSAKPCILFFDEFDSI 772 (952)
T ss_pred HHHHHh---c-------ccHHHHHHHHHHhhccCCeEEEecccccc
Confidence 222221 1 12345667777777679999999998765
No 480
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=91.32 E-value=0.16 Score=49.72 Aligned_cols=20 Identities=45% Similarity=0.743 Sum_probs=18.9
Q ss_pred EEEEEecCCCcHHHHHHHHH
Q 000679 179 MIGVYGVNGVGKTTLVKQIA 198 (1355)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~ 198 (1355)
.|+|.|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999988
No 481
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=91.30 E-value=0.99 Score=52.88 Aligned_cols=89 Identities=18% Similarity=0.232 Sum_probs=52.8
Q ss_pred ceEEEEEecCCCcHHHHHHH-HHHHHhhhcCCCEE-EEEEeCCCCC-HHHHHHHHHHhhcccc------ccCCCHHHH--
Q 000679 177 VGMIGVYGVNGVGKTTLVKQ-IAMQVIEDKLFDKV-VFVEVTQTPD-LQTIQNKLSSDLELEF------KQNENVFQR-- 245 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~-v~~~~~~~~~F~~~-~wv~~s~~~~-~~~~~~~i~~~l~~~~------~~~~~~~~~-- 245 (1355)
-..++|.|..|+||||||.. +.+.. .-|.+ +++-+++... +.++.+.+...=.... ...+.....
T Consensus 141 GQR~~I~g~~g~GKt~Lal~~I~~q~----~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~ 216 (485)
T CHL00059 141 GQRELIIGDRQTGKTAVATDTILNQK----GQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYL 216 (485)
T ss_pred CCEEEeecCCCCCHHHHHHHHHHhcc----cCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHH
Confidence 35789999999999999654 44432 24544 8888887654 5666666654321110 011111111
Q ss_pred ----HHHHHHHHh-cCCeEEEEEeCcccc
Q 000679 246 ----AEKLRQRLK-NVKRVLVILDNIWKL 269 (1355)
Q Consensus 246 ----~~~l~~~l~-~~k~~LlvlDdv~~~ 269 (1355)
.-.+.++++ +|+++|+|+||+...
T Consensus 217 ap~~a~aiAEyfr~~G~~VLlv~DdlTr~ 245 (485)
T CHL00059 217 APYTGAALAEYFMYRGRHTLIIYDDLSKQ 245 (485)
T ss_pred HHHHHhhHHHHHHHcCCCEEEEEcChhHH
Confidence 122344444 369999999998654
No 482
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=91.28 E-value=0.24 Score=56.02 Aligned_cols=48 Identities=15% Similarity=0.292 Sum_probs=41.0
Q ss_pred ccccchhHHHHHHHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHHh
Q 000679 155 YEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1355)
Q Consensus 155 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1355)
...++|-++.+..|...+.++...-|.|.|..|+||||+|+.+++-..
T Consensus 16 f~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 16 FTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred HHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 456789999888888887787777788999999999999999987653
No 483
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=91.27 E-value=0.28 Score=48.42 Aligned_cols=34 Identities=26% Similarity=0.493 Sum_probs=28.2
Q ss_pred HHHHHHHhhcCCceEEEEEecCCCcHHHHHHHHHHHH
Q 000679 165 FQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 165 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
+++|.+++.+ ++++++|..|+|||||+..+..+.
T Consensus 26 ~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 26 IEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred HHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 5666676644 799999999999999999998764
No 484
>PRK14530 adenylate kinase; Provisional
Probab=91.22 E-value=0.18 Score=53.82 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHH
Q 000679 178 GMIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
+.|.|+|++|+||||+|+.++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998876
No 485
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=91.17 E-value=0.12 Score=48.20 Aligned_cols=28 Identities=43% Similarity=0.546 Sum_probs=19.3
Q ss_pred EEEEecCCCcHHHHHHHHHHHHhhhcCCCE
Q 000679 180 IGVYGVNGVGKTTLVKQIAMQVIEDKLFDK 209 (1355)
Q Consensus 180 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 209 (1355)
|-|+|.+|+||||+|+.++.... ..|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~--~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLG--LSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT----EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcC--CceeE
Confidence 67899999999999999998864 34643
No 486
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=91.14 E-value=0.19 Score=45.65 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHH
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIA 198 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~ 198 (1355)
...++|+|+.|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999976
No 487
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=91.13 E-value=0.25 Score=51.14 Aligned_cols=38 Identities=29% Similarity=0.352 Sum_probs=30.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeC
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVT 216 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 216 (1355)
.++|.|+|+.|+|||||++.+..... ..|..+++.+-.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~--~~~~~~v~~TTR 39 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP--DKFGRVVSHTTR 39 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST--TTEEEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc--cccccceeeccc
Confidence 47899999999999999999999864 457555555544
No 488
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=91.11 E-value=1.2 Score=52.45 Aligned_cols=89 Identities=15% Similarity=0.206 Sum_probs=55.6
Q ss_pred ceEEEEEecCCCcHHHHH-HHHHHHHhhhcCCCE-EEEEEeCCCCC-HHHHHHHHHHhhcccc------ccCCCHHH---
Q 000679 177 VGMIGVYGVNGVGKTTLV-KQIAMQVIEDKLFDK-VVFVEVTQTPD-LQTIQNKLSSDLELEF------KQNENVFQ--- 244 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~s~~~~-~~~~~~~i~~~l~~~~------~~~~~~~~--- 244 (1355)
-..++|.|..|+|||||| ..+.+.. .-|. ++++-+++... +.++.+.+...=.... ...+....
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~q~----~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~ 237 (497)
T TIGR03324 162 GQRELILGDRQTGKTAIAIDTILNQK----GRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYI 237 (497)
T ss_pred CCEEEeecCCCCCHHHHHHHHHHHhc----CCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHH
Confidence 357899999999999997 4666653 2454 78888988754 5667666655321110 01111111
Q ss_pred ---HHHHHHHHHh-cCCeEEEEEeCcccc
Q 000679 245 ---RAEKLRQRLK-NVKRVLVILDNIWKL 269 (1355)
Q Consensus 245 ---~~~~l~~~l~-~~k~~LlvlDdv~~~ 269 (1355)
..-.+.++++ +|+++|+|+||+...
T Consensus 238 ap~~a~aiAEyfrd~G~~VLlv~DdlTr~ 266 (497)
T TIGR03324 238 APYAATSIGEHFMEQGRDVLIVYDDLTQH 266 (497)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcChhHH
Confidence 1223444553 379999999998654
No 489
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=91.10 E-value=0.84 Score=45.69 Aligned_cols=117 Identities=19% Similarity=0.177 Sum_probs=63.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEE--EEEEeCCCCCHHHHHHHHHHhhc-----cc--cccCCC------
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKV--VFVEVTQTPDLQTIQNKLSSDLE-----LE--FKQNEN------ 241 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~--~wv~~s~~~~~~~~~~~i~~~l~-----~~--~~~~~~------ 241 (1355)
...|-|++..|.||||.|..++-+..- ..+... -|+.-........+++.+ .+. .. ......
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~-~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALG-HGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHH-CCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHH
Confidence 468889999999999999998887653 233322 133332223333343332 111 10 000011
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEeCccccccc-----cccCCCCCCccccCCCCCCCcEEEEEeCchh
Q 000679 242 VFQRAEKLRQRLKNVKRVLVILDNIWKLLNL-----DAVGIPFGDVKKERNDDRSRCTVLLTSRNRD 303 (1355)
Q Consensus 242 ~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~-----~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~ 303 (1355)
..+.....++.+..++--|+|||.+-....+ +.+...+.. ...+..||+|-|+..
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~-------rp~~~evVlTGR~~p 141 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQE-------RPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHh-------CCCCCEEEEECCCCC
Confidence 1122333455555545569999998655333 233332322 556778999999874
No 490
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=91.09 E-value=0.32 Score=54.28 Aligned_cols=39 Identities=33% Similarity=0.492 Sum_probs=28.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCC
Q 000679 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQT 218 (1355)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 218 (1355)
+.|+|+|-||+||||+|..++.....++ + .++-|+....
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G-~-~VlliD~D~q 39 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMG-K-KVMIVGCDPK 39 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCC-C-eEEEEeCCCC
Confidence 4789999999999999999998876433 3 3444555433
No 491
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=91.07 E-value=0.15 Score=49.56 Aligned_cols=23 Identities=39% Similarity=0.650 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 000679 179 MIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
.|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999864
No 492
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=91.04 E-value=0.7 Score=53.91 Aligned_cols=90 Identities=14% Similarity=0.290 Sum_probs=52.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCC-CHHHHHHHHHHhhccccc------cCCCHHH----
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP-DLQTIQNKLSSDLELEFK------QNENVFQ---- 244 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~------~~~~~~~---- 244 (1355)
....++|+|..|+|||||++.+.... ..+.++...+.... ++.++...+...-+.... .......
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a 242 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFT----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRA 242 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHH
Confidence 34579999999999999999887643 23454444455443 345555555443221110 0111111
Q ss_pred --HHHHHHHHHh-cCCeEEEEEeCcccc
Q 000679 245 --RAEKLRQRLK-NVKRVLVILDNIWKL 269 (1355)
Q Consensus 245 --~~~~l~~~l~-~~k~~LlvlDdv~~~ 269 (1355)
..-.+.++++ +++++|+++||+..-
T Consensus 243 ~~~a~aiAEyfrd~G~~VLl~~DslTR~ 270 (451)
T PRK05688 243 AMYCTRIAEYFRDKGKNVLLLMDSLTRF 270 (451)
T ss_pred HHHHHHHHHHHHHCCCCEEEEecchhHH
Confidence 1223444453 379999999998654
No 493
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.01 E-value=0.19 Score=53.14 Aligned_cols=26 Identities=35% Similarity=0.396 Sum_probs=23.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHH
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
...+|+|+|+.|+||||||+.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999999874
No 494
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=90.98 E-value=0.71 Score=47.75 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHH
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
.+.|.|+|++|+||+|++..+....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 3689999999999999999998875
No 495
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=90.97 E-value=0.55 Score=54.63 Aligned_cols=90 Identities=20% Similarity=0.313 Sum_probs=52.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCC-CHHHHHHHHHHhhcccc------ccCCCHHH----
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP-DLQTIQNKLSSDLELEF------KQNENVFQ---- 244 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~---- 244 (1355)
....++|+|..|+|||||++.+.+... .+..+...+.+.. .+.++.+.....-.... ........
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a 211 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRA 211 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHH
Confidence 345799999999999999998886542 3444555566543 34555555443311100 01111111
Q ss_pred --HHHHHHHHHh-cCCeEEEEEeCcccc
Q 000679 245 --RAEKLRQRLK-NVKRVLVILDNIWKL 269 (1355)
Q Consensus 245 --~~~~l~~~l~-~~k~~LlvlDdv~~~ 269 (1355)
..-.+.++++ +++++|+++||+..-
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dsltr~ 239 (411)
T TIGR03496 212 AFYATAIAEYFRDQGKDVLLLMDSLTRF 239 (411)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeChHHH
Confidence 1223444443 369999999998554
No 496
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=90.95 E-value=0.33 Score=53.96 Aligned_cols=52 Identities=29% Similarity=0.346 Sum_probs=36.1
Q ss_pred cccchhHHHHH---HHHHHhhcCC--ceEEEEEecCCCcHHHHHHHHHHHHhhhcCC
Q 000679 156 EQFDSRMKIFQ---NIMEVLKDTN--VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLF 207 (1355)
Q Consensus 156 ~~~~gr~~~~~---~l~~~L~~~~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 207 (1355)
.++||..++.+ -+++++.+.+ .+.|.+.|++|.|||+||..+++....+-.|
T Consensus 24 ~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF 80 (398)
T PF06068_consen 24 DGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPF 80 (398)
T ss_dssp TTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-E
T ss_pred ccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCe
Confidence 57888765544 3556665443 5899999999999999999999998655444
No 497
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=90.94 E-value=0.22 Score=51.76 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHH
Q 000679 177 VGMIGVYGVNGVGKTTLVKQIAMQV 201 (1355)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1355)
..+|.|.|.+|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999875
No 498
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=90.93 E-value=0.18 Score=52.32 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=23.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHh
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1355)
...+++|+|.+|.||||||+.++.-.+
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccC
Confidence 346899999999999999999987653
No 499
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=90.89 E-value=0.94 Score=53.22 Aligned_cols=91 Identities=14% Similarity=0.271 Sum_probs=49.1
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHHhhhcCCCEEEEEEeCCCC-CHHHHHHHHHH------hhccccccCCCHH----
Q 000679 175 TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP-DLQTIQNKLSS------DLELEFKQNENVF---- 243 (1355)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~------~l~~~~~~~~~~~---- 243 (1355)
....+++|+|..|+|||||++.+...... -..++++ +++.. ++.++.+..+. .+..-........
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~~~---~~gvI~~-~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~ 231 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARNTSA---DLNVIAL-IGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIK 231 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcccCC---CeEEEEE-EecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHH
Confidence 34578999999999999999988875432 1233333 33322 34444333211 1111111111111
Q ss_pred --HHHHHHHHHHh-cCCeEEEEEeCcccc
Q 000679 244 --QRAEKLRQRLK-NVKRVLVILDNIWKL 269 (1355)
Q Consensus 244 --~~~~~l~~~l~-~~k~~LlvlDdv~~~ 269 (1355)
...-.+.++++ +++++|+++||+..-
T Consensus 232 ~~~~a~~iAEyfr~~g~~Vll~~Dsltr~ 260 (438)
T PRK07721 232 GAYTATAIAEYFRDQGLNVMLMMDSVTRV 260 (438)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeChHHH
Confidence 11223444553 379999999998543
No 500
>PRK15453 phosphoribulokinase; Provisional
Probab=90.89 E-value=1.2 Score=48.29 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=23.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHHh
Q 000679 176 NVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1355)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1355)
+..+|+|.|.+|+||||+|+.+.+...
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457999999999999999999997653
Done!