Query 000679
Match_columns 1355
No_of_seqs 464 out of 5626
Neff 10.0
Searched_HMMs 29240
Date Tue Mar 26 16:45:44 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000679.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_450-454//hhsearch_pdb/000679hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 386.9 19.6 314 153-497 126-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 357.2 25.2 316 150-495 118-452 (1249)
3 3rgz_A Protein brassinosteroid 1.0 1 1 334.2 27.9 643 514-1316 52-743 (768)
4 1vt4_I APAF-1 related killer D 1.0 1 1 322.5 18.1 282 158-488 130-436 (1221)
5 3rgz_A Protein brassinosteroid 1.0 1 1 321.6 28.2 628 534-1318 50-722 (768)
6 1ziw_A TOLL-like receptor 3; i 1.0 1 1 297.4 35.2 604 516-1288 8-624 (680)
7 1z6t_A APAF-1, apoptotic prote 1.0 1 1 296.0 27.9 309 152-493 120-450 (591)
8 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 284.5 27.1 180 515-704 14-200 (606)
9 1ziw_A TOLL-like receptor 3; i 1.0 1 1 278.0 38.5 590 547-1315 15-624 (680)
10 3t6q_A CD180 antigen; protein- 1.0 1 1 277.9 31.4 172 516-699 16-193 (606)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=386.92 Aligned_cols=314 Identities=13% Similarity=0.149 Sum_probs=247.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCC---CCEEEEEEECCCCCHHHHHHHHHH--HHHHHCCCCEEEEEEECCCC--CHHHHH
Q ss_conf 77445550499999999996249---932999990699927899999999--97440389879999958899--989999
Q 000679 153 TAYEQFDSRMKIFQNIMEVLKDT---NVGMIGVYGVNGVGKTTLVKQIAM--QVIEDKLFDKVVFVEVTQTP--DLQTIQ 225 (1355)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~---~~~~i~i~G~~G~GKTtLa~~~~~--~~~~~~~f~~~~wv~~s~~~--~~~~~~ 225 (1355)
.....| ||+.++++|.++|..+ ..++|+|+||||+||||||+++|+ +.+++.+|+.++|+++++.+ +...++
T Consensus 126 ~~~~~~-GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 204 (549)
T 2a5y_B 126 KQMTCY-IREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLF 204 (549)
T ss_dssp CCCCSC-CCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHH
T ss_pred CCCCCC-CCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHH
T ss_conf 977607-8417999999987251578962899986999988999999998406987466995799997898787999999
Q ss_pred HHHHHHHCCCCC-------CCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 999996111101-------4889999999999998437739999907543336452379887753347799999299998
Q 000679 226 NKLSSDLELEFK-------QNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLT 298 (1355)
Q Consensus 226 ~~i~~~l~~~~~-------~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~iivT 298 (1355)
..|+.+++.... ...+.......+.+.+...+|+|||+||||+.+++ .+ + ...||+||||
T Consensus 205 ~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~----~--------~~~gs~ilvT 271 (549)
T 2a5y_B 205 TDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW----A--------QELRLRCLVT 271 (549)
T ss_dssp HHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH----H--------HHTTCEEEEE
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHH-CC----C--------CCCCCEEEEE
T ss_conf 999999853755345555331469999999999976898489999799971441-54----3--------2699889997
Q ss_pred ECCHHHHHHCCC-CCCEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 176146631189-8533964899999999999998389999851499999999990999599999999983289378999
Q 000679 299 SRNRDVLCNDMN-SQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANALKNKRLYVWND 377 (1355)
Q Consensus 299 tr~~~v~~~~~~-~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~ 377 (1355)
||+..++. .++ ....|++++|+.+|+|+||.++++.....++.++++++|+++|+|+|||++++|+.++.+. .+|.+
T Consensus 272 TR~~~v~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~ 349 (549)
T 2a5y_B 272 TRDVEISN-AASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMA 349 (549)
T ss_dssp ESBGGGGG-GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHH
T ss_pred CCCHHHHH-HCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCH-HHHHH
T ss_conf 49779999-70889738989998989999999987448998556899999999995998399999999844344-89998
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHH-----------HHCCCCCCCCCCHHHHHHHHHHC--CCC
Q ss_conf 99998312343233202435535442002379456898987-----------75034899864967899999650--898
Q 000679 378 SLERLRNSTSRQIHGMEENVYSSIELSYSFLKSEEEKSMFR-----------LCALRKDGSPIPIDDLMRYGIGL--GLF 444 (1355)
Q Consensus 378 ~~~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~~f~-----------~~a~fp~~~~i~~~~li~~w~~~--g~~ 444 (1355)
.+... .+.. ...++..++.+||+.||++ +|.||+ |||+||+++.|+ +++|+|+ ||+
T Consensus 350 ~l~~~----l~~~--~~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i 418 (549)
T 2a5y_B 350 QLNNK----LESR--GLVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDI 418 (549)
T ss_dssp HHHHH----HHHH--CSSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC--
T ss_pred HHHHH----HHCC--CHHHHHHHHHCCCCCCCHH-HHHHHHCCCHHHHHHHHHEEEECCCCEEE----EEEEEEECCCEE
T ss_conf 75787----6136--4777898975162022679-99997526522336743235608997666----533110135500
Q ss_pred CCCC---CHHHHHHHHHHHHHHHHHCCCEECCCC---CCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 8874---448998789999999974014322798---8301234899999998503538
Q 000679 445 SNVR---TSEAARNRVYTLVDNLKASSLLLDGDK---DEVKLHDIIYAVAVSIARDEFM 497 (1355)
Q Consensus 445 ~~~~---~~~~~~~~~~~~l~~L~~~~li~~~~~---~~~~mhdlv~~~~~~~~~~~~~ 497 (1355)
.... +.+++ .. ++++|++++|++.... ..|+|||+||+||+.++.++++
T Consensus 419 ~~~~~~~~~~~~---~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 419 CSNEEEQLDDEV---AD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp -----CCCTHHH---HH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred CCCCCCCCHHHH---HH-HHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHHHH
T ss_conf 267789999999---99-99999875883671479804999676999999999889899
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=357.15 Aligned_cols=316 Identities=22% Similarity=0.315 Sum_probs=249.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHH--CCCCEEEEEEECCCCCHHHHHHHHHHHHHH-HCCC-CEEEEEEECCCCC--HHH
Q ss_conf 545774455504999999999962--499329999906999278999999999744-0389-8799999588999--899
Q 000679 150 VSYTAYEQFDSRMKIFQNIMEVLK--DTNVGMIGVYGVNGVGKTTLVKQIAMQVIE-DKLF-DKVVFVEVTQTPD--LQT 223 (1355)
Q Consensus 150 ~~~~~~~~~~gr~~~~~~l~~~l~--~~~~~~i~i~G~~G~GKTtLa~~~~~~~~~-~~~f-~~~~wv~~s~~~~--~~~ 223 (1355)
..|.....|+||++++++|.++|. +++.++|+|+||||+||||||+++|++.+. ..+| +.++|+++++..+ ...
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred CCCCCCCEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCCHHHHH
T ss_conf 97999864125799999999998613588777999918988888999998607567886278817999978857267999
Q ss_pred HHHHHHHHHCCCCC----CCCCHHHHHHHHHHHHHC-CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 99999996111101----488999999999999843-7739999907543336452379887753347799999299998
Q 000679 224 IQNKLSSDLELEFK----QNENVFQRAEKLRQRLKN-VKRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLT 298 (1355)
Q Consensus 224 ~~~~i~~~l~~~~~----~~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~iivT 298 (1355)
.+..++..+..... ...........+...+.. ++|+||||||||+..+|+.+ .+|++||||
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~--------------~~~~~ilvT 263 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF--------------DNQCQILLT 263 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT--------------CSSCEEEEE
T ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH--------------CCCCEEEEE
T ss_conf 999999986553033347887778999999999735678789999567997788763--------------689789999
Q ss_pred ECCHHHHHHCCCCCCEEECCC-CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 176146631189853396489-9999999999998389999851499999999990999599999999983289378999
Q 000679 299 SRNRDVLCNDMNSQKFFLIEV-LSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANALKNKRLYVWND 377 (1355)
Q Consensus 299 tr~~~v~~~~~~~~~~~~l~~-l~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~ 377 (1355)
||++.++.........+.+++ |+.+|+++||...++.. .+...+.+++|+++|+|+||||+++|++|+.++ .+|..
T Consensus 264 tR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~ 340 (1249)
T 3sfz_A 264 TRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAY 340 (1249)
T ss_dssp ESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHH
T ss_pred CCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCC--HHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH-HHHHH
T ss_conf 277899876348843798258888788999999865798--134838899999984997799999999862480-57999
Q ss_pred HHHHHHCCCCCCCC----CCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 99998312343233----20243553544200237945689898775034899864967899999650898887444899
Q 000679 378 SLERLRNSTSRQIH----GMEENVYSSIELSYSFLKSEEEKSMFRLCALRKDGSPIPIDDLMRYGIGLGLFSNVRTSEAA 453 (1355)
Q Consensus 378 ~~~~l~~~~~~~~~----~~~~~i~~~l~~sy~~L~~~~~k~~f~~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~ 453 (1355)
+++.+......... ...+.+..++.+||+.|+++ .|.||+|||+||+++.|+.+.++.+|.++
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------ 407 (1249)
T 3sfz_A 341 YLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLE------------ 407 (1249)
T ss_dssp HHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCC------------
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHH-HHHHHHHHCCCCCCCEECHHHHHHHHCCC------------
T ss_conf 99998650443034655644677999999899867999-99999972813799751899999885898------------
Q ss_pred HHHHHHHHHHHHHCCCEECCCCCC---CCHHHHHHHHHHHHHCCC
Q ss_conf 878999999997401432279883---012348999999985035
Q 000679 454 RNRVYTLVDNLKASSLLLDGDKDE---VKLHDIIYAVAVSIARDE 495 (1355)
Q Consensus 454 ~~~~~~~l~~L~~~~li~~~~~~~---~~mhdlv~~~~~~~~~~~ 495 (1355)
+.....++++|++++|++....+. |+|||++|+|++.++.++
T Consensus 408 ~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHH
T ss_conf 889999999997446338963798118996689999987450678
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=334.20 Aligned_cols=643 Identities=13% Similarity=0.036 Sum_probs=314.5
Q ss_pred EEEEECCCCCCCC----CCC-CCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCCC-CCC--CCCCCCCC
Q ss_conf 1799587889998----887-568896079996214787765692554189952299844887544-584--30034677
Q 000679 514 SIAISLPNRDIDE----LPE-RLECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLS-LPS--SLVCLISL 585 (1355)
Q Consensus 514 ~r~lsl~~~~~~~----l~~-~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~-lp~--~l~~L~~L 585 (1355)
++.+.+....+.. ++. ....++|+.+....+ ....+|.. |..+++|++|+|+++.+.. +|. .++++++|
T Consensus 52 v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~--~~~~l~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 128 (768)
T 3rgz_A 52 VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNS--HINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128 (768)
T ss_dssp EEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTS--CEEECCCC-CCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred EEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCC--CCCCCCHH-HCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCC
T ss_conf 789877899867755766965731680224678688--86787033-245788998989898578707896787278899
Q ss_pred CEEEECCCCCCC--CCCC-CCCCCCCEEECCCCCCCCCC-HH---HHCCCCCCEEECCCCCHHHCCCHHHHHHHCCCCCC
Q ss_conf 699805877888--3112-34334530101357777465-65---32164576883457620101450478520012100
Q 000679 586 RTLSLEGCQVGD--VAIV-GQLKKLEILSFRNSDIQQLP-RE---IGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEEL 658 (1355)
Q Consensus 586 r~L~L~~~~i~~--~~~i-~~L~~L~~L~L~~~~i~~lp-~~---i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L 658 (1355)
++|++++|.+.. |..+ .++.+|++|++++|.+...+ .. +.++++|++|+++++. +....+ ++++.+|++|
T Consensus 129 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--~~~l~~L~~L 205 (768)
T 3rgz_A 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK-ISGDVD--VSRCVNLEFL 205 (768)
T ss_dssp CEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSE-EESCCB--CTTCTTCCEE
T ss_pred CEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCC-CCCCCC--CCCCCCCCEE
T ss_conf 9898968826774797785638899989897983588587155664358988989897880-346578--4547868989
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCC-CCHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEECCC
Q ss_conf 24888652100137886442521099999768999325668-88132201131689998312124544554217982555
Q 000679 659 YMGDSFSQWEKVEGGSNASLVELKGLSKLTTLEIHIRDARI-MPQDLISMKLEIFRMFIGNVVDWYHKFERSRLVKLDKL 737 (1355)
Q Consensus 659 ~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~-~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~L~~l 737 (1355)
++++|.+. .. +..++.+++|+.|+++.+.... ++..+
T Consensus 206 ~Ls~n~l~--------~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~l--------------------------------- 243 (768)
T 3rgz_A 206 DVSSNNFS--------TG-IPFLGDCSALQHLDISGNKLSGDFSRAI--------------------------------- 243 (768)
T ss_dssp ECCSSCCC--------SC-CCBCTTCCSCCEEECCSSCCCSCHHHHT---------------------------------
T ss_pred ECCCCCCC--------CC-CCCCCCCCCCCEEECCCCCCCCCCCHHH---------------------------------
T ss_conf 89288278--------87-7111269999989794885878165777---------------------------------
Q ss_pred CCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCEECCCC
Q ss_conf 20030146698874123648872456843233344643222477387531277636730366754566786654201232
Q 000679 738 EKNILLGQGMKMFLKRTEDLYLHDLKGFQNVVHELDDGEVFSELKHLHVEHSYEILHIVSSIGQVCCKVFPLLESLSLCR 817 (1355)
Q Consensus 738 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~ 817 (1355)
..+++|+.|.+.++.... ..+ ...+++|++|++.++.....++.. -...+++|+.|.+.+
T Consensus 244 -----------~~l~~L~~L~Ls~n~l~~----~~~-~~~l~~L~~L~L~~n~l~~~ip~~----~~~~~~~L~~L~Ls~ 303 (768)
T 3rgz_A 244 -----------STCTELKLLNISSNQFVG----PIP-PLPLKSLQYLSLAENKFTGEIPDF----LSGACDTLTGLDLSG 303 (768)
T ss_dssp -----------TTCSSCCEEECCSSCCEE----SCC-CCCCTTCCEEECCSSEEEESCCCC----SCTTCTTCSEEECCS
T ss_pred -----------HCCCCCCEEECCCCCCCC----CCC-CCCCCCCCEEECCCCCCCCCCCHH----HHHHCCCCCEEECCC
T ss_conf -----------448888989898886657----167-243687898979178557725888----884468688998968
Q ss_pred CCCCCHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 23421010267878887788548998017986544562668840356489981453203452245333322232157546
Q 000679 818 LFNLEKICHNRLHEDESFSNLRIIKVGECDKLRHLFSFSMAKNLLRLQKISVFDCKSLEIIVGLDMEKQRTTLGFNGITT 897 (1355)
Q Consensus 818 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~l~~~~~~~ 897 (1355)
+.-...++.. .+.+++|+.|.+.+|.-...++. ..+..+++|++|.+++|.....++
T Consensus 304 n~l~~~~p~~----~~~l~~L~~L~L~~n~l~~~ip~-~~l~~l~~L~~L~Ls~n~l~~~~p------------------ 360 (768)
T 3rgz_A 304 NHFYGAVPPF----FGSCSLLESLALSSNNFSGELPM-DTLLKMRGLKVLDLSFNEFSGELP------------------ 360 (768)
T ss_dssp SEEEECCCGG----GGGCTTCCEEECCSSEEEEECCH-HHHTTCTTCCEEECCSSEEEECCC------------------
T ss_pred CCCCCCCCHH----HHCCCCCCEEECCCCCCCCCCCH-HHHHCCCCCCEEECCCCCCCCCCC------------------
T ss_conf 9677842367----75587766778978852573797-887248888788484784376230------------------
Q ss_pred CCCCCCCCCCC-CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 79999653357-76602134632212226778778886789638998026563322442378521036235872036652
Q 000679 898 KDDPDEKVIFP-SLEELDLYSLITIEKLWPKQFQGMSSCQNLTKVTVAFCDRLKYLFSYSMVNSLVQLQHLEICYCWSME 976 (1355)
Q Consensus 898 ~~~~~~~~~~~-~L~~L~L~~~~~l~~~~~~~~~~l~~l~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~ 976 (1355)
..+..++ +|+.|++++|.....+...... ..+++|+.|.+++|. ++...+ ..+..+++|+.|++++|....
T Consensus 361 ----~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~--~~~~~L~~L~L~~n~-l~~~~p-~~l~~l~~L~~L~Ls~N~l~~ 432 (768)
T 3rgz_A 361 ----ESLTNLSASLLTLDLSSNNFSGPILPNLCQ--NPKNTLQELYLQNNG-FTGKIP-PTLSNCSELVSLHLSFNYLSG 432 (768)
T ss_dssp ----TTHHHHTTTCSEEECCSSEEEEECCTTTTC--STTCCCCEEECCSSE-EEEECC-GGGGGCTTCCEEECCSSEEES
T ss_pred ----HHHHHHHCCCCEEECCCCCCCCCCCHHHHH--CCCCCCCEEECCCCC-CCCCCC-HHHHCCCCCCEEECCCCCCCC
T ss_conf ----989863227719986278747876766653--324776189897784-654248-777568987989895884668
Q ss_pred EECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEECCCCCCCCCCCCCCC
Q ss_conf 01115765433687630001332101023588788754345665534688537842458674320023566422126997
Q 000679 977 GVVETNSTESRRDEGRLIEIVFPKLLYLRLIDLPKLMGFSIGIHSVEFPSLLELQIDDCPNMKRFISISSSQDNIHANPQ 1056 (1355)
Q Consensus 977 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~~l~~~~~ 1056 (1355)
.++ ..+..+++|+.|+++++.-....+... ..+++|+.|++++|.-...++
T Consensus 433 ~~p-------------~~l~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p-------------- 483 (768)
T 3rgz_A 433 TIP-------------SSLGSLSKLRDLKLWLNMLEGEIPQEL--MYVKTLETLILDFNDLTGEIP-------------- 483 (768)
T ss_dssp CCC-------------GGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCCSCCC--------------
T ss_pred CCC-------------HHHHCCCCCCEEECCCCCCCCCCCHHH--CCCCCCEEEEECCCCCCCCCC--------------
T ss_conf 546-------------777449988989897881547189788--287773299901995137588--------------
Q ss_pred CCCCCCCCCCCCEEEEECCCCCHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCC
Q ss_conf 65333469998309999054320132023354455543000121212126688754485078633279954899722888
Q 000679 1057 PLFDEKVGTPNLMTLRVSYCHNIEEIIRHVGEDVKENRITFNQLKNLELDDLPSLTSFCLGNCTLEFPSLERVFVRNCRN 1136 (1355)
Q Consensus 1057 ~~f~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~l~sL~~L~i~~c~~ 1136 (1355)
.....+++|+.|++++|. +....|. ....+++|+.|.+.++.-...++.. ...+++|+.|++++|+.
T Consensus 484 ---~~l~~l~~L~~L~L~~N~-l~~~~p~-------~~~~l~~L~~L~L~~N~l~~~~p~~--l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 484 ---SGLSNCTNLNWISLSNNR-LTGEIPK-------WIGRLENLAILKLSNNSFSGNIPAE--LGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp ---GGGGGCTTCCEEECCSSC-CCSCCCG-------GGGGCTTCCEEECCSSCCEEECCGG--GGGCTTCCEEECCSSEE
T ss_pred ---HHHHCCCCCCEEECCCCC-CCCCCCH-------HHHCCCCCCEEECCCCCCCCCCCHH--HCCCCCCCEEECCCCCC
T ss_conf ---788169989989753995-1896876-------8856899998989789433748877--70889899898988846
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCC---------C----CCCCC-------------------CCCHHHHHHEEEC
Q ss_conf 54335663125565212451344333211---------1----11358-------------------7510032202330
Q 000679 1137 MKTFSEGVVCAPKLKKVQVTKKEQEEDEW---------C----SCWEG-------------------NLNSTIQKLFVVG 1184 (1355)
Q Consensus 1137 l~~l~~~~~~~~~L~~L~i~~~~~~~~~~---------~----~~~~~-------------------~~~~~~~~~~~~~ 1184 (1355)
...+|........+..+.+..+....... . ....+ +.........+..
T Consensus 551 ~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~ 630 (768)
T 3rgz_A 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630 (768)
T ss_dssp ESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS
T ss_pred CCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHC
T ss_conf 88279578604212232013454211113444322223322210013556323200232110011331004627433403
Q ss_pred CCCCCEEEECCCCCCCEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCEEEEECCCCCEEEEECCCCCC
Q ss_conf 37620347433888420024577775436987679996389988876624785128897899801687305650356677
Q 000679 1185 FHDIKDLKLSQFPHLKEIWHGQALNVSIFSNLRSLGVDNCTNMSSAIPANLLRCLNNLERLKVRNCDSLEEVFHLEDVNA 1264 (1355)
Q Consensus 1185 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~l~~l~sL~~L~i~~c~~l~~~~~~~~~~~ 1264 (1355)
+++|+.|++++|.-...+ |..++.+++|+.|++++ +.++..+|. .+..+++|+.|++++|.....++. .
T Consensus 631 l~~L~~LdLs~N~l~g~i----p~~l~~l~~L~~L~Ls~-N~l~g~ip~-~l~~L~~L~~LdLs~N~l~g~ip~-----~ 699 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYI----PKEIGSMPYLFILNLGH-NDISGSIPD-EVGDLRGLNILDLSSNKLDGRIPQ-----A 699 (768)
T ss_dssp SBCCCEEECCSSCCBSCC----CGGGGGCTTCCEEECCS-SCCCSCCCG-GGGGCTTCCEEECCSSCCEECCCG-----G
T ss_pred CCCCCEEECCCCCCCCCC----CHHHHCCCCCCEEECCC-CCCCCCCCH-HHHCCCCCCEEECCCCCCCCCCCH-----H
T ss_conf 356657978588015558----77884141578784868-803887896-784777899898978802386886-----7
Q ss_pred CCCCCCCCCCCCEEECCCCCCCEEECCCCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf 6767877873037753988885034179743222477686988048874231
Q 000679 1265 DEHFGPLFPKLYELELIDLPKLKRFCNFKWNIIELLSLSSLWIENCPNMETF 1316 (1355)
Q Consensus 1265 ~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~sL~~L~i~~C~~l~~l 1316 (1355)
+.. +++|+.|++++|+....+|.+.. +.++....+.|++.+.-.
T Consensus 700 ---l~~-l~~L~~L~ls~N~l~g~iP~~~~----~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 700 ---MSA-LTMLTEIDLSNNNLSGPIPEMGQ----FETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp ---GGG-CCCCSEEECCSSEEEEECCSSSS----GGGSCGGGGCSCTEEEST
T ss_pred ---HHC-CCCCCEEECCCCCCCCCCCCCHH----HCCCCHHHHCCCCHHCCC
T ss_conf ---757-88789787968815560899601----024897775698321088
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=322.54 Aligned_cols=282 Identities=18% Similarity=0.210 Sum_probs=220.6
Q ss_pred CCHHHHHHHHHHHHHHC-CCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCE-EEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 55049999999999624-99329999906999278999999999744038987-99999588999899999999961111
Q 000679 158 FDSRMKIFQNIMEVLKD-TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDK-VVFVEVTQTPDLQTIQNKLSSDLELE 235 (1355)
Q Consensus 158 ~~gr~~~~~~l~~~l~~-~~~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~~~l~~~ 235 (1355)
.+||+.++++|.++|.+ +..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...+...++..++..
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 78928999999999743589718999769996679999999971498874899389998289999999999999998622
Q ss_pred C---CCC--------CCHHHHHHHHHHHHH--CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCH
Q ss_conf 0---148--------899999999999984--377399999075433364523798877533477999992999981761
Q 000679 236 F---KQN--------ENVFQRAEKLRQRLK--NVKRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNR 302 (1355)
Q Consensus 236 ~---~~~--------~~~~~~~~~l~~~l~--~~~~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~iivTtr~~ 302 (1355)
. ... .........+.+.+. .++|+||||||||+.+.|+.+ ..||+||||||+.
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f--------------~pGSRILVTTRd~ 275 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF--------------NLSCKILLTTRFK 275 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH--------------HSSCCEEEECSCS
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHH--------------CCCEEEEEECCCH
T ss_conf 72102200134679999999999999999850478879987186818999864--------------7982999944373
Q ss_pred HHHHHCCCCCCEEECC------CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCC--CHHH
Q ss_conf 4663118985339648------9999999999999838999985149999999999099959999999998328--9378
Q 000679 303 DVLCNDMNSQKFFLIE------VLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANALKNK--RLYV 374 (1355)
Q Consensus 303 ~v~~~~~~~~~~~~l~------~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~--~~~~ 374 (1355)
.++. .+.....++++ +|+.+|+|+||.+..+.. .. +... +.|+|+||||+++|+.|+.+ +..+
T Consensus 276 ~Va~-~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~--~e---eL~~---eICgGLPLALkLaGs~Lr~k~~s~ee 346 (1221)
T 1vt4_I 276 QVTD-FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR--PQ---DLPR---EVLTTNPRRLSIIAESIRDGLATWDN 346 (1221)
T ss_dssp HHHH-HHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC--TT---THHH---HHCCCCHHHHHHHHHHHHHSCSSHHH
T ss_pred HHHH-HCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC--HH---HHHH---HHHCCCHHHHHHHHHHHHCCCCCHHH
T ss_conf 7998-66897089946865568969999999999974998--89---9999---99698999999999998488997999
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHH-HHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 999999983123432332024355354420023794568-9898775034899864967899999650898887444899
Q 000679 375 WNDSLERLRNSTSRQIHGMEENVYSSIELSYSFLKSEEE-KSMFRLCALRKDGSPIPIDDLMRYGIGLGLFSNVRTSEAA 453 (1355)
Q Consensus 375 w~~~~~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~-k~~f~~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~ 453 (1355)
|... ....+..++.+||+.||++ . |.||++||+||+++.|+.+.++.+|+++|. +
T Consensus 347 W~~~--------------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-------e-- 402 (1221)
T 1vt4_I 347 WKHV--------------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-------S-- 402 (1221)
T ss_dssp HHHC--------------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-------H--
T ss_pred HHCC--------------CHHHHHHHHHHHHHHCCHH-HHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCH-------H--
T ss_conf 8669--------------8618999999999848899-99999999717799998779999987667788-------9--
Q ss_pred HHHHHHHHHHHHHCCCEECCC-CCCCCHHHHHHHHH
Q ss_conf 878999999997401432279-88301234899999
Q 000679 454 RNRVYTLVDNLKASSLLLDGD-KDEVKLHDIIYAVA 488 (1355)
Q Consensus 454 ~~~~~~~l~~L~~~~li~~~~-~~~~~mhdlv~~~~ 488 (1355)
....++++|+++||++... ...|+|||++++++
T Consensus 403 --dAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 403 --DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp --HHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred --HHHHHHHHHHHHCCEEEECCCCEEEEHHHHHHHH
T ss_conf --9999999999619889868999898609999985
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=321.55 Aligned_cols=628 Identities=13% Similarity=0.015 Sum_probs=412.7
Q ss_pred CCEEEEEEECCCCCCCC---CCHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCC--CC--CCCCCCC
Q ss_conf 96079996214787765---69255418995229984488754458430034677699805877888--31--1234334
Q 000679 534 PKLSLFLLFAKYDSSLK---IPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGD--VA--IVGQLKK 606 (1355)
Q Consensus 534 ~~Lr~L~~~~~~~~~~~---~~~~~~~~l~~Lr~L~L~~~~~~~lp~~l~~L~~Lr~L~L~~~~i~~--~~--~i~~L~~ 606 (1355)
.+++.|.+.+. .-... ++. .+..+++|++++++.+.+..+|..++++++|++|++++|.+.. |. .++++.+
T Consensus 50 ~~v~~L~L~~~-~l~g~~~~l~~-~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~ 127 (768)
T 3rgz_A 50 DKVTSIDLSSK-PLNVGFSAVSS-SLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127 (768)
T ss_dssp TEEEEEECTTS-CCCEEHHHHHH-HTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTT
T ss_pred CCEEEEECCCC-CCCCCCCCCCH-HHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCC
T ss_conf 92789877899-86775576696-57316802246786888678703324578899898989857870789678727889
Q ss_pred CCEEECCCCCCC-CCCHHH-HCCCCCCEEECCCCCHHHCCCHHH---HHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 530101357777-465653-216457688345762010145047---852001210024888652100137886442521
Q 000679 607 LEILSFRNSDIQ-QLPREI-GQLVQLRLLDLRNCRRLQAIAPNV---ISKLSRLEELYMGDSFSQWEKVEGGSNASLVEL 681 (1355)
Q Consensus 607 L~~L~L~~~~i~-~lp~~i-~~L~~L~~L~l~~~~~l~~~p~~~---i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 681 (1355)
|++|++++|.+. ..|..+ .++++|++|+++++. +...+... ++++++|++|++++|.+. . ...+
T Consensus 128 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-------~---~~~~ 196 (768)
T 3rgz_A 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS-ISGANVVGWVLSDGCGELKHLAISGNKIS-------G---DVDV 196 (768)
T ss_dssp CCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC-CEEETHHHHHHTTCCTTCCEEECCSSEEE-------S---CCBC
T ss_pred CCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCC-CCCCCCHHHHHHCCCCCCCEEECCCCCCC-------C---CCCC
T ss_conf 99898968826774797785638899989897983-58858715566435898898989788034-------6---5784
Q ss_pred CCCCCCCEEEEEECCCCCCCHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 09999976899932566888132201131689998312124544554217982555200301466988741236488724
Q 000679 682 KGLSKLTTLEIHIRDARIMPQDLISMKLEIFRMFIGNVVDWYHKFERSRLVKLDKLEKNILLGQGMKMFLKRTEDLYLHD 761 (1355)
Q Consensus 682 ~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~L~~l~~~~~~~~~~~~~l~~L~~L~l~~ 761 (1355)
..+++|+.|+++.+........+. .+++|+.|.+.+
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~l~--------------------------------------------~l~~L~~L~Ls~ 232 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPFLG--------------------------------------------DCSALQHLDISG 232 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCBCT--------------------------------------------TCCSCCEEECCS
T ss_pred CCCCCCCEEECCCCCCCCCCCCCC--------------------------------------------CCCCCCEEECCC
T ss_conf 547868989892882788771112--------------------------------------------699999897948
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCEECCCCCCCCCHHCCCCCCCCCCCCCCCEE
Q ss_conf 56843233344643222477387531277636730366754566786654201232234210102678788877885489
Q 000679 762 LKGFQNVVHELDDGEVFSELKHLHVEHSYEILHIVSSIGQVCCKVFPLLESLSLCRLFNLEKICHNRLHEDESFSNLRII 841 (1355)
Q Consensus 762 ~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L 841 (1355)
+......... ++.+++|+.|++.++.....++ ...+++|++|.+.++.-...++.. + ...+++|+.|
T Consensus 233 n~l~~~~~~~---l~~l~~L~~L~Ls~n~l~~~~~-------~~~l~~L~~L~L~~n~l~~~ip~~-~--~~~~~~L~~L 299 (768)
T 3rgz_A 233 NKLSGDFSRA---ISTCTELKLLNISSNQFVGPIP-------PLPLKSLQYLSLAENKFTGEIPDF-L--SGACDTLTGL 299 (768)
T ss_dssp SCCCSCHHHH---TTTCSSCCEEECCSSCCEESCC-------CCCCTTCCEEECCSSEEEESCCCC-S--CTTCTTCSEE
T ss_pred CCCCCCCCHH---HHCCCCCCEEECCCCCCCCCCC-------CCCCCCCCEEECCCCCCCCCCCHH-H--HHHCCCCCEE
T ss_conf 8587816577---7448888989898886657167-------243687898979178557725888-8--8446868899
Q ss_pred EEECCCCCCCCCCHHHHHHCCCCCEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC
Q ss_conf 98017986544562668840356489981453203452245333322232157546799996533577660213463221
Q 000679 842 KVGECDKLRHLFSFSMAKNLLRLQKISVFDCKSLEIIVGLDMEKQRTTLGFNGITTKDDPDEKVIFPSLEELDLYSLITI 921 (1355)
Q Consensus 842 ~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 921 (1355)
.+.+|.-....+. .+..+++|+.|.+.+|.....++. ..+..+++|+.|++++| .+
T Consensus 300 ~Ls~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~ip~---------------------~~l~~l~~L~~L~Ls~n-~l 355 (768)
T 3rgz_A 300 DLSGNHFYGAVPP--FFGSCSLLESLALSSNNFSGELPM---------------------DTLLKMRGLKVLDLSFN-EF 355 (768)
T ss_dssp ECCSSEEEECCCG--GGGGCTTCCEEECCSSEEEEECCH---------------------HHHTTCTTCCEEECCSS-EE
T ss_pred ECCCCCCCCCCCH--HHHCCCCCCEEECCCCCCCCCCCH---------------------HHHHCCCCCCEEECCCC-CC
T ss_conf 8968967784236--775587766778978852573797---------------------88724888878848478-43
Q ss_pred CCCCCCCCCCCCCCC-CCCEEEEECCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCEECCCCCCCCCCCCCCEECCCCCC
Q ss_conf 222677877888678-9638998026563322442378521036235872036652011157654336876300013321
Q 000679 922 EKLWPKQFQGMSSCQ-NLTKVTVAFCDRLKYLFSYSMVNSLVQLQHLEICYCWSMEGVVETNSTESRRDEGRLIEIVFPK 1000 (1355)
Q Consensus 922 ~~~~~~~~~~l~~l~-~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 1000 (1355)
.... +..+..++ +|+.|++++|.-...+++......+++|+.|++.+|.....++ ..+..+++
T Consensus 356 ~~~~---p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-------------~~l~~l~~ 419 (768)
T 3rgz_A 356 SGEL---PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP-------------PTLSNCSE 419 (768)
T ss_dssp EECC---CTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC-------------GGGGGCTT
T ss_pred CCCC---CHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCC-------------HHHHCCCC
T ss_conf 7623---0989863227719986278747876766653324776189897784654248-------------77756898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHH
Q ss_conf 01023588788754345665534688537842458674320023566422126997653334699983099990543201
Q 000679 1001 LLYLRLIDLPKLMGFSIGIHSVEFPSLLELQIDDCPNMKRFISISSSQDNIHANPQPLFDEKVGTPNLMTLRVSYCHNIE 1080 (1355)
Q Consensus 1001 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~~l~~~~~~~f~~~~~l~~L~~L~l~~c~~l~ 1080 (1355)
|+.|+++++.-....+.. ...+++|+.|.+++|.-...++ .....+++|+.|++++| .+.
T Consensus 420 L~~L~Ls~N~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p-----------------~~~~~l~~L~~L~L~~N-~l~ 479 (768)
T 3rgz_A 420 LVSLHLSFNYLSGTIPSS--LGSLSKLRDLKLWLNMLEGEIP-----------------QELMYVKTLETLILDFN-DLT 479 (768)
T ss_dssp CCEEECCSSEEESCCCGG--GGGCTTCCEEECCSSCCCSCCC-----------------GGGGGCTTCCEEECCSS-CCC
T ss_pred CCEEECCCCCCCCCCCHH--HHCCCCCCEEECCCCCCCCCCC-----------------HHHCCCCCCEEEEECCC-CCC
T ss_conf 798989588466854677--7449988989897881547189-----------------78828777329990199-513
Q ss_pred HHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 32023354455543000121212126688754485078633279954899722888543356631255652124513443
Q 000679 1081 EIIRHVGEDVKENRITFNQLKNLELDDLPSLTSFCLGNCTLEFPSLERVFVRNCRNMKTFSEGVVCAPKLKKVQVTKKEQ 1160 (1355)
Q Consensus 1081 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~l~sL~~L~i~~c~~l~~l~~~~~~~~~L~~L~i~~~~~ 1160 (1355)
...|. ....+++|+.|.+.++.-...++.. ...+++|++|++++|.....+|..+..+++|+.|++++|..
T Consensus 480 ~~~p~-------~l~~l~~L~~L~L~~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 480 GEIPS-------GLSNCTNLNWISLSNNRLTGEIPKW--IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp SCCCG-------GGGGCTTCCEEECCSSCCCSCCCGG--GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred CCCCH-------HHHCCCCCCEEECCCCCCCCCCCHH--HHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCC
T ss_conf 75887-------8816998998975399518968768--85689999898978943374887770889899898988846
Q ss_pred CCCCCC--CCCCCCCCHHHH------------------------------HHEEECCCCCCEEEECCCCCCCEECCCCCC
Q ss_conf 332111--113587510032------------------------------202330376203474338884200245777
Q 000679 1161 EEDEWC--SCWEGNLNSTIQ------------------------------KLFVVGFHDIKDLKLSQFPHLKEIWHGQAL 1208 (1355)
Q Consensus 1161 ~~~~~~--~~~~~~~~~~~~------------------------------~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 1208 (1355)
....-. +...+....... ...+..++.+..+++.... +.. ..|.
T Consensus 551 ~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~-~~g---~~~~ 626 (768)
T 3rgz_A 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV-YGG---HTSP 626 (768)
T ss_dssp ESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCE-EEE---ECCC
T ss_pred CCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCE-ECC---CCCH
T ss_conf 882795786042122320134542111134443222233222100135563232002321100113310-046---2743
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEE
Q ss_conf 75436987679996389988876624785128897899801687305650356677676787787303775398888503
Q 000679 1209 NVSIFSNLRSLGVDNCTNMSSAIPANLLRCLNNLERLKVRNCDSLEEVFHLEDVNADEHFGPLFPKLYELELIDLPKLKR 1288 (1355)
Q Consensus 1209 ~~~~l~~L~~L~i~~c~~l~~l~~~~~l~~l~sL~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~ 1288 (1355)
.+..+++|+.|++++ ++++..+|. .+.++++|+.|++++|.....++. . ++. +++|+.|+++++.....
T Consensus 627 ~~~~l~~L~~LdLs~-N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~g~ip~-----~---l~~-L~~L~~LdLs~N~l~g~ 695 (768)
T 3rgz_A 627 TFDNNGSMMFLDMSY-NMLSGYIPK-EIGSMPYLFILNLGHNDISGSIPD-----E---VGD-LRGLNILDLSSNKLDGR 695 (768)
T ss_dssp SCSSSBCCCEEECCS-SCCBSCCCG-GGGGCTTCCEEECCSSCCCSCCCG-----G---GGG-CTTCCEEECCSSCCEEC
T ss_pred HHHCCCCCCEEECCC-CCCCCCCCH-HHHCCCCCCEEECCCCCCCCCCCH-----H---HHC-CCCCCEEECCCCCCCCC
T ss_conf 340335665797858-801555877-884141578784868803887896-----7---847-77899898978802386
Q ss_pred ECCCCCCCCCCCCCCEEEECCCCCCCCCCC
Q ss_conf 417974322247768698804887423134
Q 000679 1289 FCNFKWNIIELLSLSSLWIENCPNMETFIS 1318 (1355)
Q Consensus 1289 ~~~~~~~~~~~~sL~~L~i~~C~~l~~l~~ 1318 (1355)
+|.... .+++|+.|++++|.--+.+|.
T Consensus 696 ip~~l~---~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 696 IPQAMS---ALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CCGGGG---GCCCCSEEECCSSEEEEECCS
T ss_pred CCHHHH---CCCCCCEEECCCCCCCCCCCC
T ss_conf 886775---788789787968815560899
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=297.44 Aligned_cols=604 Identities=16% Similarity=0.134 Sum_probs=268.6
Q ss_pred EEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCC-CCCCCCCCCCCEEEECCCC
Q ss_conf 995878899988875688960799962147877656925541899522998448875445-8430034677699805877
Q 000679 516 AISLPNRDIDELPERLECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSL-PSSLVCLISLRTLSLEGCQ 594 (1355)
Q Consensus 516 ~lsl~~~~~~~l~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~l~~L~~Lr~L~L~~~~ 594 (1355)
.+..++..+..+|.... +++++|.+.++ ....++...|..+++|++|+++++.+..+ |..++++++|++|++++|.
T Consensus 8 ~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 8 VADCSHLKLTQVPDDLP-TNITVLNLTHN--QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp EEECCSSCCSSCCSCSC-TTCSEEECCSS--CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred EEECCCCCCCCCCCCCC-CCCCEEECCCC--CCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCC
T ss_conf 44877798052641248-88768889899--7787597887178767588788996485697787406676888899985
Q ss_pred CCC-C-CCCCCCCCCCEEECCCCCCCCCC-HHHHCCCCCCEEECCCCCHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 888-3-11234334530101357777465-65321645768834576201014504785200121002488865210013
Q 000679 595 VGD-V-AIVGQLKKLEILSFRNSDIQQLP-REIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVE 671 (1355)
Q Consensus 595 i~~-~-~~i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 671 (1355)
+.. | ..++++.+|++|++++|.+..+| ..++++++|++|+++++. +...+...++++++|++|+++++.+.
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~----- 158 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQ----- 158 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCC-----
T ss_pred CCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCC-CCCCCCHHHCCCCCCCEEECCCCCCC-----
T ss_conf 675685453038888989898996685396674156788889898995-24667211124556777974588436-----
Q ss_pred CCCCCCHHHH--CCCCCCCEEEEEECCCCCCCHHHHH--CCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf 7886442521--0999997689993256688813220--11316899983121245445542179825552003014669
Q 000679 672 GGSNASLVEL--KGLSKLTTLEIHIRDARIMPQDLIS--MKLEIFRMFIGNVVDWYHKFERSRLVKLDKLEKNILLGQGM 747 (1355)
Q Consensus 672 ~~~~~~~~~l--~~L~~L~~L~l~~~~~~~~~~~~~~--~~L~~l~~~~~~~~~~~~~~~~l~~~~L~~l~~~~~~~~~~ 747 (1355)
......+ ..+++|+.|+++.+....++..... .+|+.+. +.............
T Consensus 159 ---~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~--------------------l~~~~l~~~~~~~~ 215 (680)
T 1ziw_A 159 ---ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF--------------------LNNVQLGPSLTEKL 215 (680)
T ss_dssp ---CBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEE--------------------CTTCCCHHHHHHHH
T ss_pred ---CCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHH--------------------CCCCCCCHHHHHHH
T ss_conf ---5297886244666321798889825655815553223445543--------------------05664680567778
Q ss_pred HHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCCCC--CCCCEECCCCCCCCCHHC
Q ss_conf 887412364887245684323334464322247738753127763673036675456678--665420123223421010
Q 000679 748 KMFLKRTEDLYLHDLKGFQNVVHELDDGEVFSELKHLHVEHSYEILHIVSSIGQVCCKVF--PLLESLSLCRLFNLEKIC 825 (1355)
Q Consensus 748 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~~--~~L~~L~l~~~~~l~~~~ 825 (1355)
.. ....++|+.|.+.++......+. ....+ ++|+.|++.++. +..+.
T Consensus 216 ~~-------------------------~l~~~~L~~L~L~~n~l~~~~~~-----~~~~l~~~~L~~L~Ls~n~-l~~~~ 264 (680)
T 1ziw_A 216 CL-------------------------ELANTSIRNLSLSNSQLSTTSNT-----TFLGLKWTNLTMLDLSYNN-LNVVG 264 (680)
T ss_dssp HH-------------------------HHTTSCCCEEECTTSCCCEECTT-----TTGGGGGSCCCEEECTTSC-CCEEC
T ss_pred HH-------------------------HHHHCCCCEEECCCCCCCCCCHH-----HHHCCCCCCCCEEECCCCC-CCCCC
T ss_conf 77-------------------------75315100887457743646866-----7514676778887787887-67568
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 26787888778854899801798654456266884035648998145320345224533332223215754679999653
Q 000679 826 HNRLHEDESFSNLRIIKVGECDKLRHLFSFSMAKNLLRLQKISVFDCKSLEIIVGLDMEKQRTTLGFNGITTKDDPDEKV 905 (1355)
Q Consensus 826 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 905 (1355)
... .+.+++|+.|.+.+|. +...++ ..+..+++|+.|.+.++..-..+.. ..... -....+.
T Consensus 265 ~~~---~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~------------~~lp~-i~~~~~~ 326 (680)
T 1ziw_A 265 NDS---FAWLPQLEYFFLEYNN-IQHLFS-HSLHGLFNVRYLNLKRSFTKQSISL------------ASLPK-IDDFSFQ 326 (680)
T ss_dssp TTT---TTTCTTCCEEECCSCC-BSEECT-TTTTTCTTCCEEECTTCBCCC------------------CCE-ECTTTTT
T ss_pred CCC---CCCCCCCCEEECCCCC-CCCCCH-HHHCCCCCCCEEECCCHHHHCCCCC------------CCCCC-CCHHHCC
T ss_conf 021---1674105685577885-676586-5626788855773633132133333------------55454-3865624
Q ss_pred CCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC-CCCCCCHHHHH-HHCCCCEEEEEECCCCCEECCCCC
Q ss_conf 3577660213463221222677877888678963899802656-33224423785-210362358720366520111576
Q 000679 906 IFPSLEELDLYSLITIEKLWPKQFQGMSSCQNLTKVTVAFCDR-LKYLFSYSMVN-SLVQLQHLEICYCWSMEGVVETNS 983 (1355)
Q Consensus 906 ~~~~L~~L~L~~~~~l~~~~~~~~~~l~~l~~L~~L~l~~C~~-l~~l~~~~~~~-~l~~L~~L~l~~c~~l~~~~~~~~ 983 (1355)
.+++|+.|+++++ .+..+... .+..+++|+.|++++|.. +..++...+.. ..++|+.|++++|... .+..
T Consensus 327 ~l~~L~~L~l~~n-~l~~~~~~---~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~-~~~~--- 398 (680)
T 1ziw_A 327 WLKCLEHLNMEDN-DIPGIKSN---MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS-KIES--- 398 (680)
T ss_dssp TCTTCCEEECCSC-CBCCCCTT---TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCC-EECT---
T ss_pred CCCCCCEEECCCC-CCCCCCHH---HHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCC-EECH---
T ss_conf 6777888879898-26878855---74065687289887980144323532202455686766889999777-6775---
Q ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 54336876300013321010235887887543456655346885378424586743200235664221269976533346
Q 000679 984 TESRRDEGRLIEIVFPKLLYLRLIDLPKLMGFSIGIHSVEFPSLLELQIDDCPNMKRFISISSSQDNIHANPQPLFDEKV 1063 (1355)
Q Consensus 984 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~~l~~~~~~~f~~~~ 1063 (1355)
..|..+++|+.++++++.-....+.. ....+++|+.|++++|. +..+. ...| .
T Consensus 399 ---------~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~-------------~~~~---~ 451 (680)
T 1ziw_A 399 ---------DAFSWLGHLEVLDLGLNEIGQELTGQ-EWRGLENIFEIYLSYNK-YLQLT-------------RNSF---A 451 (680)
T ss_dssp ---------TTTTTCTTCCEEECCSSCCEEECCSG-GGTTCTTCCEEECCSCS-EEECC-------------TTTT---T
T ss_pred ---------HHHHCCCCCCEEECCCCCCCCCCCCC-CCCCCCCCCEEECCCCC-CCEEC-------------HHHH---H
T ss_conf ---------44207788888867787575435755-32575461278448997-54227-------------6455---0
Q ss_pred CCCCCEEEEECCCCCHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 99983099990543201320233544555430001212121266887544850786332799548997228885433566
Q 000679 1064 GTPNLMTLRVSYCHNIEEIIRHVGEDVKENRITFNQLKNLELDDLPSLTSFCLGNCTLEFPSLERVFVRNCRNMKTFSEG 1143 (1355)
Q Consensus 1064 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~l~sL~~L~i~~c~~l~~l~~~ 1143 (1355)
.+++|+.|++++|. +..+ ...+ .....+++|+.|++++| +++.++..
T Consensus 452 ~~~~L~~L~l~~n~-l~~~-----------------------------~~~p--~~~~~l~~L~~L~Ls~N-~l~~i~~~ 498 (680)
T 1ziw_A 452 LVPSLQRLMLRRVA-LKNV-----------------------------DSSP--SPFQPLRNLTILDLSNN-NIANINDD 498 (680)
T ss_dssp TCTTCCEEECTTSC-CBCT-----------------------------TCSS--CTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred CCCCCCCCHHCCCC-CCCC-----------------------------CCCC--CCCCCCCCCCEEECCCC-CCCCCCHH
T ss_conf 07543101101464-4225-----------------------------6677--64555787899989999-87767944
Q ss_pred -CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHEEECCCCCCEEEECCCCCCCEECCCCCCCCCCCCCCCEEEEE
Q ss_conf -3125565212451344333211111358751003220233037620347433888420024577775436987679996
Q 000679 1144 -VVCAPKLKKVQVTKKEQEEDEWCSCWEGNLNSTIQKLFVVGFHDIKDLKLSQFPHLKEIWHGQALNVSIFSNLRSLGVD 1222 (1355)
Q Consensus 1144 -~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~ 1222 (1355)
+..+++|+.|++++|........ ..+.. ....+..+++|+.|+++++. ++.+.. ..+..+++|+.|+++
T Consensus 499 ~~~~l~~L~~L~Ls~N~l~~~~~~-----~~~~~-~~~~~~~l~~L~~L~L~~N~-l~~i~~---~~~~~l~~L~~L~Ls 568 (680)
T 1ziw_A 499 MLEGLEKLEILDLQHNNLARLWKH-----ANPGG-PIYFLKGLSHLHILNLESNG-FDEIPV---EVFKDLFELKIIDLG 568 (680)
T ss_dssp TTTTCTTCCEEECCSSCCGGGGST-----TSTTS-CCCTTTTCTTCCEEECCSSC-CCCCCT---TTTTTCTTCCEEECC
T ss_pred HHCCCCCCCEEECCCCCCCCCCHH-----HCCCC-CCHHHCCCCCCCEEECCCCC-CCCCCH---HHCCCCCCCCEEECC
T ss_conf 634553468885889973000000-----04677-41423379988888899997-887797---773466675223899
Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEE
Q ss_conf 389988876624785128897899801687305650356677676787787303775398888503
Q 000679 1223 NCTNMSSAIPANLLRCLNNLERLKVRNCDSLEEVFHLEDVNADEHFGPLFPKLYELELIDLPKLKR 1288 (1355)
Q Consensus 1223 ~c~~l~~l~~~~~l~~l~sL~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~ 1288 (1355)
+ ++++.+ |+..+.++++|+.|++++|. ++.+ +... +...+++|+.|+++++|-..+
T Consensus 569 ~-N~l~~l-~~~~~~~l~~L~~L~L~~N~-l~~~-----~~~~--~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 569 L-NNLNTL-PASVFNNQVSLKSLNLQKNL-ITSV-----EKKV--FGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp S-SCCCCC-CTTTTTTCTTCCEEECTTSC-CCBC-----CHHH--HHHHHTTCSEEECTTCCCCBC
T ss_pred C-CCCCCC-CHHHHCCCCCCCEEECCCCC-CCCC-----CHHH--HCCCCCCCCEEECCCCCCCCC
T ss_conf 9-977767-97683789888889899996-8705-----9668--301146657798318970257
No 7
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=1.00 E-value=1 Score=295.97 Aligned_cols=309 Identities=22% Similarity=0.317 Sum_probs=232.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHH--CCCCEEEEEEECCCCCHHHHHHHHHHHHHH-HCCC-CEEEEEEECCCCCHHHHHHH
Q ss_conf 5774455504999999999962--499329999906999278999999999744-0389-87999995889998999999
Q 000679 152 YTAYEQFDSRMKIFQNIMEVLK--DTNVGMIGVYGVNGVGKTTLVKQIAMQVIE-DKLF-DKVVFVEVTQTPDLQTIQNK 227 (1355)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~l~--~~~~~~i~i~G~~G~GKTtLa~~~~~~~~~-~~~f-~~~~wv~~s~~~~~~~~~~~ 227 (1355)
|.....|+||+.+++++.+++. .++.++|+|+||||+||||||.+++++..+ ..+| +.++|++++.. +...+...
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~ 198 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMK 198 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHH
T ss_pred CCCCCEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCHHHHHHHCCCCEEEEECCCC-CHHHHHHH
T ss_conf 99987140529999999999860368884699976998988999999983556888528996599977877-66889999
Q ss_pred H---HHHHCCC----CCCCCCHHHHHHHHHHHHHCC-CEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 9---9961111----014889999999999998437-7399999075433364523798877533477999992999981
Q 000679 228 L---SSDLELE----FKQNENVFQRAEKLRQRLKNV-KRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTS 299 (1355)
Q Consensus 228 i---~~~l~~~----~~~~~~~~~~~~~l~~~l~~~-~~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~iivTt 299 (1355)
+ +..++.. .............+...+... +++|||+||+|+...++. ...+++|||||
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~--------------l~~~~~ilvTs 264 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA--------------FDSQCQILLTT 264 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT--------------TCSSCEEEEEE
T ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHH--------------HCCCCEEEEEC
T ss_conf 9999998503556556799889999999999970679986999858998799987--------------63798699989
Q ss_pred CCHHHHHHCCCCCCEEEC---CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHH
Q ss_conf 761466311898533964---89999999999999838999985149999999999099959999999998328937899
Q 000679 300 RNRDVLCNDMNSQKFFLI---EVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANALKNKRLYVWN 376 (1355)
Q Consensus 300 r~~~v~~~~~~~~~~~~l---~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~ 376 (1355)
|...++.. .. ...+.+ ++|+.+|++++|...++.. .....+.+.+|+++|+|+|+|++++|+.++... .+|.
T Consensus 265 R~~~~~~~-~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~ 339 (591)
T 1z6t_A 265 RDKSVTDS-VM-GPKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWE 339 (591)
T ss_dssp SCGGGGTT-CC-SCEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHH
T ss_pred CCCHHHHH-CC-CCCEEEECCCCCCHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC-HHHH
T ss_conf 88177773-48-9826861588999899999999871898--310459999999995898379999999984484-3599
Q ss_pred HHHHHHHCCCCCCC----CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 99999831234323----32024355354420023794568989877503489986496789999965089888744489
Q 000679 377 DSLERLRNSTSRQI----HGMEENVYSSIELSYSFLKSEEEKSMFRLCALRKDGSPIPIDDLMRYGIGLGLFSNVRTSEA 452 (1355)
Q Consensus 377 ~~~~~l~~~~~~~~----~~~~~~i~~~l~~sy~~L~~~~~k~~f~~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~ 452 (1355)
.+++.+.+...... ......+..++..||+.||++ .|.||+++|+||+++.|+.+.+..+|.++ .+
T Consensus 340 ~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~--------~~- 409 (591)
T 1z6t_A 340 YYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDME--------TE- 409 (591)
T ss_dssp HHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCC--------HH-
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHH-HHHHHHHCCCCCCCCCCCHHHHHHHHCCC--------HH-
T ss_conf 999999886898765114654378999999999868999-99999974556799850899999996658--------89-
Q ss_pred HHHHHHHHHHHHHHCCCEECCCCC---CCCHHHHHHHHHHHHHC
Q ss_conf 987899999999740143227988---30123489999999850
Q 000679 453 ARNRVYTLVDNLKASSLLLDGDKD---EVKLHDIIYAVAVSIAR 493 (1355)
Q Consensus 453 ~~~~~~~~l~~L~~~~li~~~~~~---~~~mhdlv~~~~~~~~~ 493 (1355)
....++++|++++|+.....+ .|+||+++|+|++....
T Consensus 410 ---~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 410 ---EVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp ---HHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred ---HHHHHHHHHHHCCCEEEECCCCCCEEEECHHHHHHHHHHHH
T ss_conf ---99999999985958688548985679976899999986535
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=284.53 Aligned_cols=180 Identities=17% Similarity=0.227 Sum_probs=120.8
Q ss_pred EEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCC-CCCCCCCCCCCEEEECCC
Q ss_conf 7995878899988875688960799962147877656925541899522998448875445-843003467769980587
Q 000679 515 IAISLPNRDIDELPERLECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSL-PSSLVCLISLRTLSLEGC 593 (1355)
Q Consensus 515 r~lsl~~~~~~~l~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~l~~L~~Lr~L~L~~~ 593 (1355)
+.+...+..+..+|.... ++++.|.+.++ ....++...|..+++|++|+++++.+..+ |..|.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP-SSTKNIDLSFN--PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TEEECTTSCCSSCCTTSC-TTCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCEECCCCCCCCCCCCCC-CCCCEEECCCC--CCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCC
T ss_conf 705746888451898888-87678878889--757737545557766748868877366439777306010688678798
Q ss_pred CCCC--CCCCCCCCCCCEEECCCCCCCCCC-HHHHCCCCCCEEECCCCCHHH--CCCHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 7888--311234334530101357777465-653216457688345762010--14504785200121002488865210
Q 000679 594 QVGD--VAIVGQLKKLEILSFRNSDIQQLP-REIGQLVQLRLLDLRNCRRLQ--AIAPNVISKLSRLEELYMGDSFSQWE 668 (1355)
Q Consensus 594 ~i~~--~~~i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~--~~p~~~i~~L~~L~~L~l~~~~~~~~ 668 (1355)
.+.. |..++++.+|++|++++|.+..+| ..++++++|++|+++++. +. .+|.. ++++++|++|+++++.+...
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAY-FSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGG-GGTCTTCCEEECCSSCCCEE
T ss_pred CCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC-CCCEECHHH-HHHCCCCCEEECCCCCCEEC
T ss_conf 5630485220786537888703775554451134898877989687885-232530686-73267777887668853105
Q ss_pred CCCCCCCCCHHHHCCCCC-CCEEEEEECCCCCCCHHH
Q ss_conf 013788644252109999-976899932566888132
Q 000679 669 KVEGGSNASLVELKGLSK-LTTLEIHIRDARIMPQDL 704 (1355)
Q Consensus 669 ~~~~~~~~~~~~l~~L~~-L~~L~l~~~~~~~~~~~~ 704 (1355)
....+..+..++. +..|+++.+....++...
T Consensus 169 -----~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~ 200 (606)
T 3vq2_A 169 -----TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA 200 (606)
T ss_dssp -----CTTTTHHHHHCTTCCCEEECTTCCCCEECTTT
T ss_pred -----CHHHHHHHHCCCCCCCEEECCCCCCCEECCCC
T ss_conf -----73341212034200243004689753257110
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=277.99 Aligned_cols=590 Identities=14% Similarity=0.120 Sum_probs=293.0
Q ss_pred CCCCCCHHHHCCCCCCEEEEECCCCCCCCCC-CCCCCCCCCEEEECCCCCCC--CCCCCCCCCCCEEECCCCCCCCCCH-
Q ss_conf 7765692554189952299844887544584-30034677699805877888--3112343345301013577774656-
Q 000679 547 SSLKIPDLFFEGMNELRVVHFTRTCFLSLPS-SLVCLISLRTLSLEGCQVGD--VAIVGQLKKLEILSFRNSDIQQLPR- 622 (1355)
Q Consensus 547 ~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~l~~L~~Lr~L~L~~~~i~~--~~~i~~L~~L~~L~L~~~~i~~lp~- 622 (1355)
....+|..+ ...+++|+++++.+..++. .|.++++|++|+++++.+.. |..++++.+|++|++++|.+..+|.
T Consensus 15 ~L~~ip~~~---~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~ 91 (680)
T 1ziw_A 15 KLTQVPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK 91 (680)
T ss_dssp CCSSCCSCS---CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCCCCCC---CCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHH
T ss_conf 805264124---88876888989977875978871787675887889964856977874066768888999856756854
Q ss_pred HHHCCCCCCEEECCCCCHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCCCCH
Q ss_conf 53216457688345762010145047852001210024888652100137886442521099999768999325668881
Q 000679 623 EIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTLEIHIRDARIMPQ 702 (1355)
Q Consensus 623 ~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 702 (1355)
.++++++|++|+++++ .+..+++..++++++|++|++++|.+. ......++.+++|+.|++..+.....+.
T Consensus 92 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLS--------STKLGTQVQLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp TTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCS--------CCCCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred HHCCCCCCCEEECCCC-CCCCCCHHHCCCCCCCCEEECCCCCCC--------CCCCHHHCCCCCCCEEECCCCCCCCCCH
T ss_conf 5303888898989899-668539667415678888989899524--------6672111245567779745884365297
Q ss_pred HHHHCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 32201131689998312124544554217982555200301466988741236488724568432333446432224773
Q 000679 703 DLISMKLEIFRMFIGNVVDWYHKFERSRLVKLDKLEKNILLGQGMKMFLKRTEDLYLHDLKGFQNVVHELDDGEVFSELK 782 (1355)
Q Consensus 703 ~~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~L~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~ 782 (1355)
.... ....++|+.|.+.+......... .+..+++|+
T Consensus 163 ~~~~-----------------------------------------~~~~~~L~~L~L~~n~l~~~~~~---~~~~l~~L~ 198 (680)
T 1ziw_A 163 EELD-----------------------------------------IFANSSLKKLELSSNQIKEFSPG---CFHAIGRLF 198 (680)
T ss_dssp HHHG-----------------------------------------GGTTCEESEEECTTCCCCCBCTT---GGGGSSEEC
T ss_pred HHHH-----------------------------------------CCCCCCCCEEECCCCCCCCCCHH---HHHHHHHHH
T ss_conf 8862-----------------------------------------44666321798889825655815---553223445
Q ss_pred EEEEECCCCEEEECCCCCCCCCCCCCCCCEECCCCCCCCCHHCCCCCCCCCCC--CCCCEEEEECCCCCCCCCCHHHHHH
Q ss_conf 87531277636730366754566786654201232234210102678788877--8854899801798654456266884
Q 000679 783 HLHVEHSYEILHIVSSIGQVCCKVFPLLESLSLCRLFNLEKICHNRLHEDESF--SNLRIIKVGECDKLRHLFSFSMAKN 860 (1355)
Q Consensus 783 ~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~--~~L~~L~l~~c~~l~~l~~~~~l~~ 860 (1355)
.|.+.++........ .....-..++|+.|.+.++ .+....... ...+ ++|+.|++++|. +..+++ ..+..
T Consensus 199 ~L~l~~~~l~~~~~~--~~~~~l~~~~L~~L~L~~n-~l~~~~~~~---~~~l~~~~L~~L~Ls~n~-l~~~~~-~~~~~ 270 (680)
T 1ziw_A 199 GLFLNNVQLGPSLTE--KLCLELANTSIRNLSLSNS-QLSTTSNTT---FLGLKWTNLTMLDLSYNN-LNVVGN-DSFAW 270 (680)
T ss_dssp EEECTTCCCHHHHHH--HHHHHHTTSCCCEEECTTS-CCCEECTTT---TGGGGGSCCCEEECTTSC-CCEECT-TTTTT
T ss_pred HHHCCCCCCCHHHHH--HHHHHHHHCCCCEEECCCC-CCCCCCHHH---HHCCCCCCCCEEECCCCC-CCCCCC-CCCCC
T ss_conf 543056646805677--7877753151008874577-436468667---514676778887787887-675680-21167
Q ss_pred CCCCCEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCC-----CCCCCCC
Q ss_conf 03564899814532034522453333222321575467999965335776602134632212226778-----7788867
Q 000679 861 LLRLQKISVFDCKSLEIIVGLDMEKQRTTLGFNGITTKDDPDEKVIFPSLEELDLYSLITIEKLWPKQ-----FQGMSSC 935 (1355)
Q Consensus 861 l~~L~~L~i~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~-----~~~l~~l 935 (1355)
++.|+.|.++++.... +. +..+..+++|+.|++.++..-..+.... ...+..+
T Consensus 271 l~~L~~L~L~~n~l~~-~~---------------------~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l 328 (680)
T 1ziw_A 271 LPQLEYFFLEYNNIQH-LF---------------------SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328 (680)
T ss_dssp CTTCCEEECCSCCBSE-EC---------------------TTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred CCCCCEEECCCCCCCC-CC---------------------HHHHCCCCCCCEEECCCHHHHCCCCCCCCCCCCHHHCCCC
T ss_conf 4105685577885676-58---------------------6562678885577363313213333355454386562467
Q ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCC-CCC
Q ss_conf 8963899802656332244237852103623587203665201115765433687630001332101023588788-754
Q 000679 936 QNLTKVTVAFCDRLKYLFSYSMVNSLVQLQHLEICYCWSMEGVVETNSTESRRDEGRLIEIVFPKLLYLRLIDLPK-LMG 1014 (1355)
Q Consensus 936 ~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-l~~ 1014 (1355)
++|+.|++++ +.++.+++ . .|..+++|+.++++++.. +..
T Consensus 329 ~~L~~L~l~~-n~l~~~~~-~-------------------------------------~~~~l~~L~~L~Ls~n~~~~~~ 369 (680)
T 1ziw_A 329 KCLEHLNMED-NDIPGIKS-N-------------------------------------MFTGLINLKYLSLSNSFTSLRT 369 (680)
T ss_dssp TTCCEEECCS-CCBCCCCT-T-------------------------------------TTTTCTTCCEEECTTCBSCCCE
T ss_pred CCCCEEECCC-CCCCCCCH-H-------------------------------------HHCCCCCCCEEECCCCCHHHHH
T ss_conf 7788887989-82687885-5-------------------------------------7406568728988798014432
Q ss_pred CCCCC-CCCCCCCCCEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHCCCCCCCCCC
Q ss_conf 34566-55346885378424586743200235664221269976533346999830999905432013202335445554
Q 000679 1015 FSIGI-HSVEFPSLLELQIDDCPNMKRFISISSSQDNIHANPQPLFDEKVGTPNLMTLRVSYCHNIEEIIRHVGEDVKEN 1093 (1355)
Q Consensus 1015 ~~~~~-~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~~l~~~~~~~f~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 1093 (1355)
..... .....++|+.|.+++|. +..+. ...| .++++|+.|++++|.....+++. .
T Consensus 370 l~~~~f~~~~~~~L~~L~L~~n~-l~~~~-------------~~~~---~~l~~L~~L~L~~N~l~~~~~~~-------~ 425 (680)
T 1ziw_A 370 LTNETFVSLAHSPLHILNLTKNK-ISKIE-------------SDAF---SWLGHLEVLDLGLNEIGQELTGQ-------E 425 (680)
T ss_dssp ECTTTTGGGTTSCCCEEECTTSC-CCEEC-------------TTTT---TTCTTCCEEECCSSCCEEECCSG-------G
T ss_pred CCHHHHCCCCCCCCCEEECCCCC-CCEEC-------------HHHH---HCCCCCCEEECCCCCCCCCCCCC-------C
T ss_conf 35322024556867668899997-77677-------------5442---07788888867787575435755-------3
Q ss_pred CEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCC--CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 3000121212126688754485078633279954899722888--54335663125565212451344333211111358
Q 000679 1094 RITFNQLKNLELDDLPSLTSFCLGNCTLEFPSLERVFVRNCRN--MKTFSEGVVCAPKLKKVQVTKKEQEEDEWCSCWEG 1171 (1355)
Q Consensus 1094 ~~~~~~L~~L~l~~~~~L~~l~~~~~~~~l~sL~~L~i~~c~~--l~~l~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~ 1171 (1355)
...+++|+.+.+.++. +..+... ....+|+|+.|++.+|.- +..+|..+..+++|+.|++++|....
T Consensus 426 ~~~l~~L~~L~Ls~n~-l~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~--------- 494 (680)
T 1ziw_A 426 WRGLENIFEIYLSYNK-YLQLTRN-SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN--------- 494 (680)
T ss_dssp GTTCTTCCEEECCSCS-EEECCTT-TTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCC---------
T ss_pred CCCCCCCCEEECCCCC-CCEECHH-HHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC---------
T ss_conf 2575461278448997-5422764-5500754310110146442256677645557878999899998776---------
Q ss_pred CCCHHHHHHEEECCCCCCEEEECCCCCCCEECCCC-----CCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCEEE
Q ss_conf 75100322023303762034743388842002457-----7775436987679996389988876624785128897899
Q 000679 1172 NLNSTIQKLFVVGFHDIKDLKLSQFPHLKEIWHGQ-----ALNVSIFSNLRSLGVDNCTNMSSAIPANLLRCLNNLERLK 1246 (1355)
Q Consensus 1172 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-----~~~~~~l~~L~~L~i~~c~~l~~l~~~~~l~~l~sL~~L~ 1246 (1355)
+....+..+++|+.|++++|. ++.++... +..+..+++|+.|++++ +.++.+ |...+.++++|+.|+
T Consensus 495 -----i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~i-~~~~~~~l~~L~~L~ 566 (680)
T 1ziw_A 495 -----INDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLES-NGFDEI-PVEVFKDLFELKIID 566 (680)
T ss_dssp -----CCTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCS-SCCCCC-CTTTTTTCTTCCEEE
T ss_pred -----CCHHHHCCCCCCCEEECCCCC-CCCCCHHHCCCCCCHHHCCCCCCCEEECCC-CCCCCC-CHHHCCCCCCCCEEE
T ss_conf -----794463455346888588997-300000004677414233799888888999-978877-977734666752238
Q ss_pred EECCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCCCCCCCCCCEEEECCCCCCCC
Q ss_conf 801687305650356677676787787303775398888503417974322247768698804887423
Q 000679 1247 VRNCDSLEEVFHLEDVNADEHFGPLFPKLYELELIDLPKLKRFCNFKWNIIELLSLSSLWIENCPNMET 1315 (1355)
Q Consensus 1247 i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~sL~~L~i~~C~~l~~ 1315 (1355)
++++. ++.+ +... +.. +++|+.|+++++ .++.++...... .+++|+.++++++|-...
T Consensus 567 Ls~N~-l~~l-----~~~~--~~~-l~~L~~L~L~~N-~l~~~~~~~~~~-~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 567 LGLNN-LNTL-----PASV--FNN-QVSLKSLNLQKN-LITSVEKKVFGP-AFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp CCSSC-CCCC-----CTTT--TTT-CTTCCEEECTTS-CCCBCCHHHHHH-HHTTCSEEECTTCCCCBC
T ss_pred CCCCC-CCCC-----CHHH--HCC-CCCCCEEECCCC-CCCCCCHHHHCC-CCCCCCEEECCCCCCCCC
T ss_conf 99997-7767-----9768--378-988888989999-687059668301-146657798318970257
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=277.86 Aligned_cols=172 Identities=17% Similarity=0.126 Sum_probs=100.2
Q ss_pred EEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCC-CCCCCCCCCCCEEEECCCC
Q ss_conf 995878899988875688960799962147877656925541899522998448875445-8430034677699805877
Q 000679 516 AISLPNRDIDELPERLECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSL-PSSLVCLISLRTLSLEGCQ 594 (1355)
Q Consensus 516 ~lsl~~~~~~~l~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~l~~L~~Lr~L~L~~~~ 594 (1355)
.+...+..+..+|... .++++.|.+.++ ....++...|..+++|++|+++++.+..+ |..|..+++|++|++++|.
T Consensus 16 ~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 16 TYNCENLGLNEIPGTL-PNSTECLEFSFN--VLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EEECTTSCCSSCCTTS-CTTCCEEECTTC--CCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCCCCCCCCC-CCCCCEEECCCC--CCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCC
T ss_conf 3777779806286778-986758981587--3471796672567665289788983552485113684336764488985
Q ss_pred CCC--CCCCCCCCCCCEEECCCCCCCCC-CHHHHCCCCCCEEECCCCCHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 888--31123433453010135777746-565321645768834576201014504785200121002488865210013
Q 000679 595 VGD--VAIVGQLKKLEILSFRNSDIQQL-PREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVE 671 (1355)
Q Consensus 595 i~~--~~~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 671 (1355)
+.. |..++++.+|++|++++|.+..+ |..++++++|++|+++++ .+..++...+..+++|++|+++++.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~----- 166 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIH----- 166 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCCC-----
T ss_pred CCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCC-CCCCCCCCCCCCCCCCCEEECCCCCCC-----
T ss_conf 65458655234421537652126766578101223782238988798-341147654568765687776568445-----
Q ss_pred CCCCCCHHHHCCCCCCC--EEEEEECCCCC
Q ss_conf 78864425210999997--68999325668
Q 000679 672 GGSNASLVELKGLSKLT--TLEIHIRDARI 699 (1355)
Q Consensus 672 ~~~~~~~~~l~~L~~L~--~L~l~~~~~~~ 699 (1355)
......++.+++|+ .|++..+....
T Consensus 167 ---~~~~~~~~~l~~L~~l~L~l~~n~l~~ 193 (606)
T 3t6q_A 167 ---YLSKEDMSSLQQATNLSLNLNGNDIAG 193 (606)
T ss_dssp ---EECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred ---CCCHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf ---549656332215640389667981475
Done!