Query 000680
Match_columns 1354
No_of_seqs 756 out of 5044
Neff 7.7
Searched_HMMs 46136
Date Mon Apr 1 21:48:03 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000680.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000680hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0054 Multidrug resistance-a 100.0 1E-245 3E-250 2318.4 135.7 1145 197-1352 122-1279(1381)
2 PLN03130 ABC transporter C fam 100.0 3E-190 7E-195 1915.6 161.9 1313 22-1352 29-1378(1622)
3 PLN03232 ABC transporter C fam 100.0 2E-185 4E-190 1872.1 162.3 1309 23-1352 30-1375(1495)
4 TIGR00957 MRP_assoc_pro multi 100.0 1E-184 3E-189 1866.8 163.9 1324 18-1352 20-1425(1522)
5 TIGR01271 CFTR_protein cystic 100.0 9E-174 2E-178 1754.5 142.4 1143 197-1352 3-1357(1490)
6 PTZ00243 ABC transporter; Prov 100.0 2E-165 4E-170 1673.2 143.1 1153 197-1352 59-1449(1560)
7 KOG0055 Multidrug/pheromone ex 100.0 5E-122 1E-126 1150.8 104.7 1064 266-1352 14-1130(1228)
8 PTZ00265 multidrug resistance 100.0 9E-111 2E-115 1129.2 129.5 1069 274-1352 57-1362(1466)
9 PRK11174 cysteine/glutathione 100.0 2.6E-69 5.6E-74 683.8 74.0 542 269-819 14-584 (588)
10 KOG0058 Peptide exporter, ABC 100.0 2.1E-68 4.6E-73 635.6 64.5 537 270-820 140-705 (716)
11 COG2274 SunT ABC-type bacterio 100.0 3.3E-65 7.1E-70 636.0 72.1 545 267-817 144-706 (709)
12 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 4.9E-65 1.1E-69 654.5 74.6 542 267-817 126-683 (686)
13 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 3.6E-65 7.8E-70 658.8 73.0 540 270-816 147-709 (710)
14 TIGR00958 3a01208 Conjugate Tr 100.0 6.5E-65 1.4E-69 652.7 72.4 535 272-815 156-710 (711)
15 TIGR03375 type_I_sec_LssB type 100.0 3.4E-64 7.4E-69 647.5 74.3 534 268-808 138-689 (694)
16 PRK11176 lipid transporter ATP 100.0 3.2E-63 6.9E-68 627.9 73.4 542 271-818 19-578 (582)
17 TIGR01193 bacteriocin_ABC ABC- 100.0 3.6E-63 7.8E-68 639.4 73.1 536 271-816 150-706 (708)
18 TIGR02203 MsbA_lipidA lipid A 100.0 9.1E-63 2E-67 623.0 73.7 543 270-817 7-566 (571)
19 KOG0055 Multidrug/pheromone ex 100.0 5.5E-63 1.2E-67 619.9 64.7 539 269-819 653-1225(1228)
20 PRK10790 putative multidrug tr 100.0 7.6E-62 1.6E-66 615.8 75.2 538 271-819 17-575 (592)
21 TIGR02204 MsbA_rel ABC transpo 100.0 7.4E-62 1.6E-66 615.0 72.9 542 269-817 10-573 (576)
22 KOG0058 Peptide exporter, ABC 100.0 6E-64 1.3E-68 597.5 49.0 459 886-1351 135-607 (716)
23 PRK11160 cysteine/glutathione 100.0 2.2E-61 4.7E-66 607.0 73.1 540 271-817 10-572 (574)
24 PRK10789 putative multidrug tr 100.0 3.5E-61 7.6E-66 605.0 71.0 526 287-819 5-550 (569)
25 PRK13657 cyclic beta-1,2-gluca 100.0 7.7E-61 1.7E-65 605.6 74.4 534 272-818 14-569 (588)
26 TIGR01846 type_I_sec_HlyB type 100.0 1.5E-60 3.2E-65 613.2 74.5 543 270-817 132-690 (694)
27 TIGR02868 CydC thiol reductant 100.0 6E-61 1.3E-65 600.0 68.7 502 272-779 8-529 (529)
28 TIGR01842 type_I_sec_PrtD type 100.0 9.8E-61 2.1E-65 598.8 70.3 519 275-807 4-542 (544)
29 COG1132 MdlB ABC-type multidru 100.0 2.2E-60 4.9E-65 598.9 72.4 533 275-819 13-564 (567)
30 TIGR01192 chvA glucan exporter 100.0 2.6E-59 5.6E-64 588.9 74.7 534 272-818 14-569 (585)
31 COG4988 CydD ABC-type transpor 100.0 1.5E-59 3.3E-64 551.2 67.4 527 283-820 6-556 (559)
32 TIGR02857 CydD thiol reductant 100.0 1.3E-59 2.7E-64 588.1 68.3 505 276-791 2-529 (529)
33 PTZ00265 multidrug resistance 100.0 5.3E-59 1.2E-63 628.0 73.2 543 273-818 821-1464(1466)
34 TIGR00957 MRP_assoc_pro multi 100.0 1.9E-57 4.1E-62 620.2 74.4 471 344-818 1031-1519(1522)
35 KOG0057 Mitochondrial Fe/S clu 100.0 1.7E-57 3.8E-62 523.7 58.2 519 290-817 43-584 (591)
36 PLN03130 ABC transporter C fam 100.0 1.2E-56 2.7E-61 610.6 74.5 472 343-819 978-1474(1622)
37 PLN03232 ABC transporter C fam 100.0 4.7E-56 1E-60 605.7 72.4 470 344-818 976-1470(1495)
38 COG4987 CydC ABC-type transpor 100.0 1.1E-55 2.5E-60 508.7 62.8 473 340-816 80-570 (573)
39 PTZ00243 ABC transporter; Prov 100.0 3.2E-55 7E-60 596.2 74.0 465 352-818 1032-1545(1560)
40 COG2274 SunT ABC-type bacterio 100.0 2.3E-56 4.9E-61 556.8 55.4 441 908-1352 162-613 (709)
41 COG4618 ArpD ABC-type protease 100.0 1.3E-54 2.9E-59 494.5 55.9 527 267-807 13-560 (580)
42 TIGR01194 cyc_pep_trnsptr cycl 100.0 3.7E-54 8E-59 539.4 64.7 510 271-799 11-551 (555)
43 TIGR02868 CydC thiol reductant 100.0 4.8E-55 1E-59 546.8 55.9 406 944-1352 62-474 (529)
44 KOG0056 Heavy metal exporter H 100.0 6.6E-56 1.4E-60 496.3 39.6 456 355-819 296-774 (790)
45 TIGR01271 CFTR_protein cystic 100.0 3.4E-53 7.3E-58 576.6 72.8 471 344-820 951-1453(1490)
46 COG1132 MdlB ABC-type multidru 100.0 5.4E-54 1.2E-58 541.0 55.5 438 909-1352 23-469 (567)
47 TIGR00958 3a01208 Conjugate Tr 100.0 4.2E-54 9.2E-59 552.7 55.5 460 887-1352 150-621 (711)
48 PRK10522 multidrug transporter 100.0 1.7E-52 3.6E-57 524.5 63.6 506 267-799 3-530 (547)
49 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 3.8E-53 8.3E-58 544.4 57.4 438 909-1352 145-592 (686)
50 TIGR01193 bacteriocin_ABC ABC- 100.0 3.4E-53 7.5E-58 546.7 55.0 460 886-1352 144-615 (708)
51 PRK11174 cysteine/glutathione 100.0 6.3E-53 1.4E-57 534.3 55.8 458 887-1352 11-489 (588)
52 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.2E-52 2.6E-57 542.2 56.1 464 886-1352 142-619 (710)
53 TIGR03375 type_I_sec_LssB type 100.0 5.1E-52 1.1E-56 534.7 57.0 460 886-1352 135-605 (694)
54 PRK10790 putative multidrug tr 100.0 5.3E-52 1.2E-56 525.9 56.1 438 908-1352 31-480 (592)
55 TIGR02857 CydD thiol reductant 100.0 2.4E-51 5.1E-56 513.5 56.5 410 938-1352 47-462 (529)
56 PRK11160 cysteine/glutathione 100.0 2.7E-51 5.8E-56 515.6 57.1 407 941-1352 66-479 (574)
57 PRK11176 lipid transporter ATP 100.0 8.5E-51 1.8E-55 514.6 56.5 407 941-1352 71-484 (582)
58 TIGR02203 MsbA_lipidA lipid A 100.0 9.2E-51 2E-55 513.7 56.4 440 908-1352 22-473 (571)
59 TIGR01846 type_I_sec_HlyB type 100.0 8.9E-51 1.9E-55 522.7 56.9 461 885-1352 126-597 (694)
60 TIGR00954 3a01203 Peroxysomal 100.0 6.8E-49 1.5E-53 498.2 61.2 504 278-793 97-653 (659)
61 TIGR02204 MsbA_rel ABC transpo 100.0 4.5E-49 9.8E-54 498.5 57.0 462 887-1352 7-480 (576)
62 PRK13657 cyclic beta-1,2-gluca 100.0 1.5E-48 3.2E-53 493.8 57.3 444 905-1352 24-475 (588)
63 TIGR01192 chvA glucan exporter 100.0 2.9E-48 6.2E-53 488.8 56.9 457 889-1352 10-475 (585)
64 PRK10789 putative multidrug tr 100.0 1.4E-48 3E-53 491.0 53.5 410 938-1352 39-455 (569)
65 KOG0054 Multidrug resistance-a 100.0 1E-47 2.3E-52 494.6 61.4 468 344-817 884-1373(1381)
66 TIGR01194 cyc_pep_trnsptr cycl 100.0 4.5E-48 9.7E-53 484.5 55.4 436 911-1352 29-474 (555)
67 KOG0056 Heavy metal exporter H 100.0 1.6E-50 3.4E-55 453.1 29.2 391 949-1344 273-666 (790)
68 COG5265 ATM1 ABC-type transpor 100.0 5.5E-49 1.2E-53 439.2 38.5 411 400-816 65-495 (497)
69 COG4987 CydC ABC-type transpor 100.0 2.3E-47 4.9E-52 440.1 48.0 404 943-1352 66-478 (573)
70 TIGR01842 type_I_sec_PrtD type 100.0 2.9E-46 6.4E-51 468.2 55.4 430 911-1352 17-458 (544)
71 COG4988 CydD ABC-type transpor 100.0 5.3E-46 1.1E-50 437.2 53.0 413 936-1352 41-460 (559)
72 PRK10261 glutathione transport 100.0 2.1E-47 4.6E-52 482.8 35.8 206 593-806 11-257 (623)
73 TIGR00956 3a01205 Pleiotropic 100.0 3.6E-46 7.8E-51 503.7 49.3 190 610-806 74-299 (1394)
74 PRK09700 D-allose transporter 100.0 1.5E-47 3.2E-52 476.2 32.8 197 594-804 5-231 (510)
75 PRK13549 xylose transporter AT 100.0 3E-47 6.5E-52 472.7 33.3 198 594-801 5-226 (506)
76 PRK15134 microcin C ABC transp 100.0 2.8E-47 6.1E-52 475.4 32.2 204 594-805 5-244 (529)
77 COG1123 ATPase components of v 100.0 1.5E-46 3.3E-51 444.3 35.5 206 594-808 5-245 (539)
78 TIGR02633 xylG D-xylose ABC tr 100.0 7.2E-47 1.6E-51 469.3 32.9 193 595-800 2-223 (500)
79 PRK15064 ABC transporter ATP-b 100.0 4.3E-46 9.3E-51 464.9 39.7 206 595-807 2-242 (530)
80 KOG0057 Mitochondrial Fe/S clu 100.0 5.8E-45 1.2E-49 420.3 45.3 401 936-1344 75-479 (591)
81 PRK15439 autoinducer 2 ABC tra 100.0 2.7E-46 5.9E-51 463.8 36.4 198 594-805 11-227 (510)
82 PRK10762 D-ribose transporter 100.0 1.3E-46 2.7E-51 466.6 32.0 193 594-800 4-223 (501)
83 PRK10938 putative molybdenum t 100.0 1.7E-46 3.7E-51 464.7 33.0 197 594-805 3-222 (490)
84 TIGR01257 rim_protein retinal- 100.0 1.8E-43 3.8E-48 474.2 63.7 202 593-807 927-1149(2272)
85 TIGR03269 met_CoM_red_A2 methy 100.0 2E-46 4.4E-51 467.2 32.5 195 595-803 1-254 (520)
86 PRK11819 putative ABC transpor 100.0 1.6E-45 3.6E-50 461.1 39.5 206 594-807 6-250 (556)
87 PRK11288 araG L-arabinose tran 100.0 8.1E-46 1.7E-50 459.4 33.6 192 594-799 4-221 (501)
88 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3.5E-45 7.7E-50 458.1 39.1 206 594-807 4-248 (552)
89 PRK10982 galactose/methyl gala 100.0 1.5E-45 3.3E-50 456.1 34.3 190 598-801 2-217 (491)
90 PRK10522 multidrug transporter 100.0 1.1E-42 2.3E-47 436.0 53.5 392 945-1352 58-453 (547)
91 PRK14257 phosphate ABC transpo 100.0 2.6E-45 5.6E-50 427.0 25.3 264 528-809 23-315 (329)
92 COG5265 ATM1 ABC-type transpor 100.0 2.6E-44 5.5E-49 401.9 29.8 386 956-1345 3-392 (497)
93 PRK10636 putative ABC transpor 100.0 1.5E-43 3.3E-48 447.7 40.5 206 595-807 2-236 (638)
94 COG0488 Uup ATPase components 100.0 2E-43 4.3E-48 427.8 35.5 206 594-808 3-241 (530)
95 COG1126 GlnQ ABC-type polar am 100.0 1E-44 2.3E-49 375.3 20.4 202 594-809 2-227 (240)
96 PRK11147 ABC transporter ATPas 100.0 8.5E-43 1.8E-47 442.3 38.5 204 594-807 3-243 (635)
97 PLN03140 ABC transporter G fam 100.0 9.7E-41 2.1E-45 448.6 47.4 197 610-806 178-426 (1470)
98 PLN03073 ABC transporter F fam 100.0 6.5E-41 1.4E-45 424.2 40.2 205 593-807 176-431 (718)
99 TIGR00954 3a01203 Peroxysomal 100.0 9.7E-40 2.1E-44 414.6 47.7 450 888-1351 81-585 (659)
100 COG1135 AbcC ABC-type metal io 100.0 4.1E-42 8.9E-47 373.5 20.0 204 595-809 2-233 (339)
101 COG4172 ABC-type uncharacteriz 100.0 9.2E-41 2E-45 370.1 30.8 207 593-807 5-247 (534)
102 COG1125 OpuBA ABC-type proline 100.0 5E-42 1.1E-46 361.3 19.1 203 595-810 2-228 (309)
103 cd03289 ABCC_CFTR2 The CFTR su 100.0 3.4E-41 7.4E-46 382.7 26.9 222 594-818 2-236 (275)
104 COG1116 TauB ABC-type nitrate/ 100.0 1.1E-41 2.4E-46 364.8 20.2 190 594-797 3-212 (248)
105 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 2.9E-41 6.3E-46 367.3 23.5 201 593-808 3-228 (254)
106 COG1120 FepC ABC-type cobalami 100.0 3.5E-41 7.6E-46 368.9 21.3 201 594-808 2-229 (258)
107 COG1117 PstB ABC-type phosphat 100.0 3.3E-41 7.2E-46 347.0 16.5 206 593-809 6-239 (253)
108 COG3839 MalK ABC-type sugar tr 100.0 1E-40 2.3E-45 378.7 22.0 203 594-810 3-226 (338)
109 COG1118 CysA ABC-type sulfate/ 100.0 9E-41 1.9E-45 361.8 18.8 203 594-810 2-230 (345)
110 COG3842 PotA ABC-type spermidi 100.0 1.5E-40 3.1E-45 379.5 19.7 204 593-810 4-229 (352)
111 COG1127 Ttg2A ABC-type transpo 100.0 4.4E-40 9.5E-45 346.2 20.7 205 592-811 6-239 (263)
112 PRK13409 putative ATPase RIL; 100.0 3E-39 6.6E-44 402.5 29.3 179 599-794 78-287 (590)
113 cd03291 ABCC_CFTR1 The CFTR su 100.0 8.3E-39 1.8E-43 364.5 30.4 219 589-812 34-252 (282)
114 COG1136 SalX ABC-type antimicr 100.0 2E-39 4.4E-44 348.3 23.2 193 595-797 2-221 (226)
115 cd03252 ABCC_Hemolysin The ABC 100.0 7.3E-39 1.6E-43 359.3 27.1 219 595-815 1-233 (237)
116 cd03250 ABCC_MRP_domain1 Domai 100.0 4.4E-39 9.6E-44 352.5 24.5 201 595-795 1-204 (204)
117 COG3638 ABC-type phosphate/pho 100.0 1.5E-39 3.2E-44 341.3 18.8 200 594-806 3-236 (258)
118 COG4618 ArpD ABC-type protease 100.0 8.3E-37 1.8E-41 349.2 40.7 399 943-1352 71-476 (580)
119 COG3840 ThiQ ABC-type thiamine 100.0 3.3E-39 7.1E-44 323.4 18.4 199 595-809 2-221 (231)
120 COG1122 CbiO ABC-type cobalt t 100.0 7.4E-39 1.6E-43 351.5 22.1 202 594-808 3-229 (235)
121 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 2.8E-38 6.1E-43 354.8 26.2 215 595-810 1-229 (238)
122 COG1124 DppF ABC-type dipeptid 100.0 1.8E-38 3.9E-43 336.3 22.2 205 594-808 3-232 (252)
123 cd03254 ABCC_Glucan_exporter_l 100.0 4E-38 8.6E-43 351.5 25.9 212 594-808 2-227 (229)
124 cd03288 ABCC_SUR2 The SUR doma 100.0 7.8E-38 1.7E-42 354.7 28.0 216 592-809 17-245 (257)
125 cd03251 ABCC_MsbA MsbA is an e 100.0 5.9E-38 1.3E-42 351.3 26.5 213 595-809 1-227 (234)
126 TIGR02314 ABC_MetN D-methionin 100.0 1.9E-38 4.1E-43 369.8 23.1 203 595-808 2-231 (343)
127 cd03253 ABCC_ATM1_transporter 100.0 8.5E-38 1.8E-42 350.5 27.2 214 595-811 1-228 (236)
128 PRK11650 ugpC glycerol-3-phosp 100.0 3.1E-38 6.7E-43 371.2 24.8 203 594-809 3-226 (356)
129 COG2884 FtsE Predicted ATPase 100.0 1.4E-38 3E-43 322.0 18.3 193 595-800 2-219 (223)
130 COG3845 ABC-type uncharacteriz 100.0 3.3E-37 7.1E-42 354.3 30.8 192 593-798 3-220 (501)
131 COG1129 MglA ABC-type sugar tr 100.0 3.1E-37 6.6E-42 363.4 31.2 197 593-799 7-226 (500)
132 cd03244 ABCC_MRP_domain2 Domai 100.0 1E-37 2.2E-42 346.3 25.5 206 594-801 2-220 (221)
133 PRK13631 cbiO cobalt transport 100.0 1.1E-37 2.4E-42 362.1 25.2 208 591-808 18-266 (320)
134 PRK11432 fbpC ferric transport 100.0 8.8E-38 1.9E-42 366.2 24.6 203 593-809 5-228 (351)
135 cd03261 ABC_Org_Solvent_Resist 100.0 9.2E-38 2E-42 349.8 22.9 200 595-808 1-227 (235)
136 cd03245 ABCC_bacteriocin_expor 100.0 2.6E-37 5.6E-42 342.8 25.5 205 594-800 2-220 (220)
137 TIGR03265 PhnT2 putative 2-ami 100.0 1.2E-37 2.5E-42 365.9 23.3 202 594-809 4-226 (353)
138 TIGR01186 proV glycine betaine 100.0 7.1E-38 1.5E-42 366.7 21.4 189 610-809 6-221 (363)
139 PRK13643 cbiO cobalt transport 100.0 2.1E-37 4.5E-42 356.3 23.9 204 595-808 2-234 (288)
140 PRK13650 cbiO cobalt transport 100.0 2.2E-37 4.9E-42 354.6 23.9 204 594-808 4-230 (279)
141 PRK09452 potA putrescine/sperm 100.0 2.6E-37 5.6E-42 364.5 24.9 204 592-809 12-236 (375)
142 PRK13634 cbiO cobalt transport 100.0 2.5E-37 5.5E-42 355.9 24.1 204 595-808 3-236 (290)
143 PRK13637 cbiO cobalt transport 100.0 2.8E-37 6.1E-42 355.0 23.8 206 594-808 2-235 (287)
144 TIGR03258 PhnT 2-aminoethylpho 100.0 2.1E-37 4.6E-42 364.0 23.1 203 593-809 4-230 (362)
145 PRK10851 sulfate/thiosulfate t 100.0 3.3E-37 7.1E-42 362.1 24.7 201 595-809 3-228 (353)
146 cd03296 ABC_CysA_sulfate_impor 100.0 5E-37 1.1E-41 344.7 24.1 199 595-807 3-226 (239)
147 PRK13537 nodulation ABC transp 100.0 4.2E-37 9.2E-42 355.9 23.7 202 593-808 6-228 (306)
148 PRK13651 cobalt transporter AT 100.0 6.2E-37 1.3E-41 353.8 24.4 204 595-808 3-255 (305)
149 PRK11000 maltose/maltodextrin 100.0 5E-37 1.1E-41 363.4 24.0 202 594-809 3-225 (369)
150 cd03219 ABC_Mj1267_LivG_branch 100.0 3.9E-37 8.5E-42 345.1 21.9 199 595-807 1-232 (236)
151 PRK13646 cbiO cobalt transport 100.0 6.4E-37 1.4E-41 352.1 23.5 205 594-808 2-236 (286)
152 PRK13647 cbiO cobalt transport 100.0 7.2E-37 1.6E-41 349.5 23.5 199 594-805 4-225 (274)
153 cd03290 ABCC_SUR1_N The SUR do 100.0 1.2E-36 2.6E-41 336.8 24.3 198 596-795 2-218 (218)
154 cd03259 ABC_Carb_Solutes_like 100.0 4.9E-37 1.1E-41 338.7 21.0 192 595-800 1-213 (213)
155 cd03226 ABC_cobalt_CbiO_domain 100.0 7E-37 1.5E-41 335.4 21.6 188 597-797 2-205 (205)
156 PRK11153 metN DL-methionine tr 100.0 9E-37 2E-41 358.5 24.0 203 595-808 2-231 (343)
157 cd03265 ABC_DrrA DrrA is the A 100.0 6.5E-37 1.4E-41 339.5 21.5 197 595-805 1-219 (220)
158 TIGR00960 3a0501s02 Type II (G 100.0 5.5E-37 1.2E-41 339.1 20.9 190 595-796 2-216 (216)
159 cd03260 ABC_PstB_phosphate_tra 100.0 6.2E-37 1.3E-41 341.4 21.3 195 595-804 1-226 (227)
160 cd03293 ABC_NrtD_SsuB_transpor 100.0 7.4E-37 1.6E-41 339.0 21.8 197 595-802 1-218 (220)
161 PRK14250 phosphate ABC transpo 100.0 1.8E-36 3.8E-41 340.5 24.6 202 594-808 3-222 (241)
162 PRK11607 potG putrescine trans 100.0 1.4E-36 3E-41 359.0 24.5 205 592-810 17-242 (377)
163 PRK13635 cbiO cobalt transport 100.0 2E-36 4.4E-41 346.5 25.1 203 594-808 5-230 (279)
164 cd03268 ABC_BcrA_bacitracin_re 100.0 1.4E-36 3.1E-41 333.8 22.8 192 595-800 1-208 (208)
165 cd03256 ABC_PhnC_transporter A 100.0 1.1E-36 2.5E-41 342.5 22.6 199 595-806 1-233 (241)
166 TIGR02315 ABC_phnC phosphonate 100.0 1.3E-36 2.9E-41 342.3 23.1 198 595-805 2-233 (243)
167 PRK13644 cbiO cobalt transport 100.0 2E-36 4.4E-41 345.8 24.4 201 595-808 2-225 (274)
168 cd03224 ABC_TM1139_LivF_branch 100.0 1.7E-36 3.6E-41 336.8 23.1 198 595-806 1-220 (222)
169 PRK09536 btuD corrinoid ABC tr 100.0 1.6E-36 3.4E-41 359.6 24.2 201 594-808 3-229 (402)
170 PRK13536 nodulation factor exp 100.0 1.5E-36 3.3E-41 354.6 23.3 203 592-808 39-262 (340)
171 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.1E-36 2.4E-41 337.2 21.0 191 595-796 1-218 (218)
172 PRK11629 lolD lipoprotein tran 100.0 2.1E-36 4.5E-41 338.3 23.1 197 594-801 5-228 (233)
173 TIGR01288 nodI ATP-binding ABC 100.0 2.3E-36 4.9E-41 350.5 24.2 201 593-807 3-224 (303)
174 PRK13641 cbiO cobalt transport 100.0 2.4E-36 5.2E-41 347.5 24.1 204 594-807 2-234 (287)
175 cd03369 ABCC_NFT1 Domain 2 of 100.0 3.9E-36 8.4E-41 330.0 24.7 189 593-801 5-206 (207)
176 COG4615 PvdE ABC-type sideroph 100.0 7.8E-34 1.7E-38 313.8 42.7 504 269-799 5-529 (546)
177 PRK11247 ssuB aliphatic sulfon 100.0 3.4E-36 7.3E-41 339.8 24.5 197 593-803 11-219 (257)
178 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 2.7E-36 5.9E-41 338.0 23.6 200 595-808 2-222 (236)
179 PRK14242 phosphate transporter 100.0 2.3E-36 5E-41 342.3 23.1 205 593-808 5-238 (253)
180 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.5E-36 3.2E-41 346.2 21.5 198 597-808 27-251 (269)
181 PRK14269 phosphate ABC transpo 100.0 2.3E-36 5E-41 340.7 22.8 204 594-808 2-231 (246)
182 cd03248 ABCC_TAP TAP, the Tran 100.0 3.4E-36 7.3E-41 335.2 23.8 205 591-796 8-226 (226)
183 cd03258 ABC_MetN_methionine_tr 100.0 2.4E-36 5.3E-41 338.0 22.7 202 595-807 2-230 (233)
184 cd03235 ABC_Metallic_Cations A 100.0 1.9E-36 4.1E-41 334.1 21.4 189 597-800 2-213 (213)
185 cd03266 ABC_NatA_sodium_export 100.0 2.2E-36 4.8E-41 334.9 22.0 195 595-800 2-218 (218)
186 PRK13636 cbiO cobalt transport 100.0 3.3E-36 7.1E-41 345.7 24.1 202 594-808 5-232 (283)
187 cd03218 ABC_YhbG The ABC trans 100.0 2.6E-36 5.6E-41 337.6 22.6 199 595-807 1-222 (232)
188 COG4175 ProV ABC-type proline/ 100.0 1E-36 2.3E-41 329.8 18.6 206 594-810 4-257 (386)
189 COG1131 CcmA ABC-type multidru 100.0 3.1E-36 6.7E-41 345.3 23.7 201 594-807 4-226 (293)
190 cd03263 ABC_subfamily_A The AB 100.0 3.1E-36 6.8E-41 334.1 22.8 198 595-805 1-219 (220)
191 PRK14273 phosphate ABC transpo 100.0 3.9E-36 8.5E-41 340.6 24.1 205 593-808 6-239 (254)
192 cd03301 ABC_MalK_N The N-termi 100.0 2.1E-36 4.6E-41 333.8 21.2 192 595-800 1-213 (213)
193 TIGR00972 3a0107s01c2 phosphat 100.0 4.2E-36 9.2E-41 338.9 24.0 203 595-808 2-233 (247)
194 COG4555 NatA ABC-type Na+ tran 100.0 1.1E-36 2.3E-41 310.6 17.2 201 595-808 2-223 (245)
195 PRK13640 cbiO cobalt transport 100.0 4.8E-36 1E-40 344.2 24.0 204 593-808 4-233 (282)
196 cd03295 ABC_OpuCA_Osmoprotecti 100.0 2.8E-36 6.1E-41 339.3 21.6 203 595-808 1-226 (242)
197 PRK13642 cbiO cobalt transport 100.0 5.7E-36 1.2E-40 342.8 24.5 204 594-808 4-230 (277)
198 PRK09493 glnQ glutamine ABC tr 100.0 5.1E-36 1.1E-40 336.8 23.7 200 595-808 2-226 (240)
199 PRK13632 cbiO cobalt transport 100.0 5.4E-36 1.2E-40 342.2 24.0 204 593-808 6-232 (271)
200 PRK13649 cbiO cobalt transport 100.0 4.7E-36 1E-40 344.6 23.5 204 595-808 3-235 (280)
201 TIGR03415 ABC_choXWV_ATP choli 100.0 2.7E-36 5.9E-41 354.7 21.9 189 610-809 37-256 (382)
202 PRK15079 oligopeptide ABC tran 100.0 5.2E-36 1.1E-40 349.3 24.0 208 592-809 6-253 (331)
203 PRK13645 cbiO cobalt transport 100.0 5.7E-36 1.2E-40 345.2 23.8 206 593-808 5-241 (289)
204 PRK10619 histidine/lysine/argi 100.0 5.7E-36 1.2E-40 339.7 23.3 204 592-808 3-242 (257)
205 PRK10744 pstB phosphate transp 100.0 7.2E-36 1.6E-40 339.4 24.0 207 591-808 10-245 (260)
206 cd03269 ABC_putative_ATPase Th 100.0 4.6E-36 1E-40 330.3 21.8 192 595-800 1-210 (210)
207 PRK11831 putative ABC transpor 100.0 5.8E-36 1.2E-40 341.6 23.2 202 593-808 6-234 (269)
208 TIGR02211 LolD_lipo_ex lipopro 100.0 5.1E-36 1.1E-40 332.7 21.9 192 595-797 2-220 (221)
209 PRK13633 cobalt transporter AT 100.0 1E-35 2.2E-40 341.3 24.7 204 594-808 4-234 (280)
210 PRK11614 livF leucine/isoleuci 100.0 1.3E-35 2.7E-40 333.0 24.8 201 594-807 5-226 (237)
211 PRK11300 livG leucine/isoleuci 100.0 1E-35 2.3E-40 337.5 24.4 200 594-807 5-243 (255)
212 PRK10070 glycine betaine trans 100.0 5.4E-36 1.2E-40 354.8 22.8 188 611-809 42-256 (400)
213 PRK13648 cbiO cobalt transport 100.0 1.1E-35 2.3E-40 339.6 24.3 203 594-808 7-232 (269)
214 PRK11231 fecE iron-dicitrate t 100.0 1.1E-35 2.3E-40 337.1 24.2 199 595-807 3-227 (255)
215 PRK11264 putative amino-acid A 100.0 6.8E-36 1.5E-40 338.0 22.3 201 594-808 3-234 (250)
216 PRK13638 cbiO cobalt transport 100.0 1.1E-35 2.3E-40 340.0 23.8 200 595-808 2-226 (271)
217 cd03264 ABC_drug_resistance_li 100.0 7.7E-36 1.7E-40 328.7 21.8 190 595-800 1-211 (211)
218 COG0410 LivF ABC-type branched 100.0 9.5E-36 2.1E-40 313.7 21.2 209 594-810 3-229 (237)
219 TIGR03410 urea_trans_UrtE urea 100.0 8.9E-36 1.9E-40 332.7 22.4 198 595-805 1-219 (230)
220 PRK13548 hmuV hemin importer A 100.0 1.9E-35 4.1E-40 335.2 25.3 199 595-807 3-230 (258)
221 PRK14235 phosphate transporter 100.0 1.4E-35 3E-40 338.0 24.3 206 591-807 16-251 (267)
222 TIGR02769 nickel_nikE nickel i 100.0 1.3E-35 2.8E-40 338.1 24.0 207 594-810 2-243 (265)
223 PRK13639 cbiO cobalt transport 100.0 1.1E-35 2.3E-40 340.3 23.3 201 595-808 2-227 (275)
224 PRK10895 lipopolysaccharide AB 100.0 1.5E-35 3.2E-40 333.3 23.8 200 594-807 3-226 (241)
225 TIGR03411 urea_trans_UrtD urea 100.0 1.2E-35 2.7E-40 334.2 23.2 199 594-807 2-231 (242)
226 cd03292 ABC_FtsE_transporter F 100.0 7.4E-36 1.6E-40 329.7 20.9 189 595-796 1-214 (214)
227 cd03225 ABC_cobalt_CbiO_domain 100.0 7E-36 1.5E-40 329.1 20.5 187 597-795 2-211 (211)
228 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.4E-35 3E-40 326.8 22.7 190 595-800 1-211 (211)
229 PRK14245 phosphate ABC transpo 100.0 9.5E-36 2.1E-40 336.6 22.0 204 594-808 3-235 (250)
230 PRK14259 phosphate ABC transpo 100.0 1.7E-35 3.6E-40 337.5 24.2 206 592-808 11-254 (269)
231 PRK13652 cbiO cobalt transport 100.0 1.7E-35 3.7E-40 338.9 24.3 202 594-808 3-228 (277)
232 PRK10575 iron-hydroxamate tran 100.0 1.5E-35 3.3E-40 337.5 23.8 202 592-807 9-237 (265)
233 PRK10584 putative ABC transpor 100.0 1.5E-35 3.2E-40 330.5 23.0 196 593-799 5-227 (228)
234 TIGR02673 FtsE cell division A 100.0 7.2E-36 1.6E-40 329.8 20.3 188 595-795 2-214 (214)
235 PRK11124 artP arginine transpo 100.0 1.8E-35 3.9E-40 332.8 23.8 199 595-807 3-230 (242)
236 PRK10253 iron-enterobactin tra 100.0 1.7E-35 3.6E-40 337.2 23.9 203 591-807 4-233 (265)
237 cd03247 ABCC_cytochrome_bd The 100.0 1.5E-35 3.2E-40 317.3 22.0 166 595-800 1-178 (178)
238 PRK10247 putative ABC transpor 100.0 1.1E-35 2.5E-40 330.3 21.7 198 593-803 6-223 (225)
239 PRK14268 phosphate ABC transpo 100.0 1.4E-35 2.9E-40 336.7 22.7 205 593-808 11-243 (258)
240 TIGR01188 drrA daunorubicin re 100.0 9E-36 1.9E-40 345.3 21.6 187 610-807 6-213 (302)
241 TIGR03522 GldA_ABC_ATP gliding 100.0 1.5E-35 3.2E-40 343.1 23.3 198 595-807 3-221 (301)
242 TIGR03873 F420-0_ABC_ATP propo 100.0 1.7E-35 3.6E-40 335.7 23.2 199 595-807 2-226 (256)
243 TIGR03005 ectoine_ehuA ectoine 100.0 1.7E-35 3.6E-40 335.0 23.1 200 595-808 1-237 (252)
244 PRK14237 phosphate transporter 100.0 2.3E-35 5E-40 336.3 24.2 208 590-808 16-252 (267)
245 PRK14274 phosphate ABC transpo 100.0 2.3E-35 4.9E-40 335.2 24.0 205 593-808 11-244 (259)
246 PRK14270 phosphate ABC transpo 100.0 2E-35 4.3E-40 334.2 23.3 204 594-808 4-236 (251)
247 PRK14249 phosphate ABC transpo 100.0 2.4E-35 5.2E-40 333.6 23.9 204 594-808 4-236 (251)
248 PRK10771 thiQ thiamine transpo 100.0 5.3E-35 1.1E-39 326.8 26.3 198 595-808 2-220 (232)
249 PRK14248 phosphate ABC transpo 100.0 2.2E-35 4.8E-40 336.9 23.4 206 592-808 19-253 (268)
250 PRK11308 dppF dipeptide transp 100.0 3E-35 6.4E-40 342.8 24.6 207 593-809 4-246 (327)
251 PRK09984 phosphonate/organopho 100.0 3.3E-35 7.2E-40 334.4 24.5 198 594-805 4-240 (262)
252 PRK14247 phosphate ABC transpo 100.0 2.4E-35 5.2E-40 333.5 23.2 204 594-808 3-235 (250)
253 TIGR03740 galliderm_ABC gallid 100.0 2.3E-35 5.1E-40 327.7 22.6 196 595-804 1-210 (223)
254 cd03257 ABC_NikE_OppD_transpor 100.0 3.2E-35 7E-40 327.9 23.4 196 595-800 2-228 (228)
255 PRK14239 phosphate transporter 100.0 2.6E-35 5.6E-40 333.7 22.9 204 594-808 5-237 (252)
256 PRK14251 phosphate ABC transpo 100.0 2.8E-35 6.1E-40 333.1 23.2 204 594-808 4-236 (251)
257 PRK11248 tauB taurine transpor 100.0 3E-35 6.4E-40 332.7 23.3 194 595-802 2-215 (255)
258 PRK14240 phosphate transporter 100.0 3.1E-35 6.8E-40 332.5 23.6 204 594-808 3-235 (250)
259 PRK10908 cell division protein 100.0 2.6E-35 5.7E-40 327.1 22.2 190 595-797 2-216 (222)
260 PRK11144 modC molybdate transp 100.0 3.7E-35 8.1E-40 346.0 24.0 198 595-809 2-220 (352)
261 PRK14243 phosphate transporter 100.0 5.2E-35 1.1E-39 332.8 24.0 204 594-808 10-249 (264)
262 TIGR01978 sufC FeS assembly AT 100.0 3.1E-35 6.8E-40 331.3 22.0 199 595-806 1-233 (243)
263 cd03262 ABC_HisP_GlnQ_permease 100.0 2.1E-35 4.7E-40 325.8 20.2 188 595-796 1-213 (213)
264 PRK15112 antimicrobial peptide 100.0 6E-35 1.3E-39 332.8 24.3 206 594-809 4-241 (267)
265 PRK09544 znuC high-affinity zi 100.0 6.7E-35 1.5E-39 328.5 24.3 199 594-807 4-209 (251)
266 cd03223 ABCD_peroxisomal_ALDP 100.0 3.7E-35 8.1E-40 310.0 20.9 161 595-794 1-163 (166)
267 PRK11022 dppD dipeptide transp 100.0 3.4E-35 7.3E-40 342.5 22.6 208 594-809 3-245 (326)
268 PRK14238 phosphate transporter 100.0 5.2E-35 1.1E-39 333.9 23.7 205 593-808 23-256 (271)
269 cd03246 ABCC_Protease_Secretio 100.0 3.3E-35 7.1E-40 313.0 20.3 160 595-796 1-173 (173)
270 PRK14236 phosphate transporter 100.0 6.2E-35 1.3E-39 333.6 24.1 207 591-808 22-257 (272)
271 TIGR00968 3a0106s01 sulfate AB 100.0 6.4E-35 1.4E-39 326.9 23.3 199 595-807 1-220 (237)
272 PRK14267 phosphate ABC transpo 100.0 5.3E-35 1.1E-39 331.3 22.5 204 594-808 4-238 (253)
273 PRK14244 phosphate ABC transpo 100.0 4.1E-35 8.9E-40 331.7 21.5 203 595-808 6-238 (251)
274 PRK14262 phosphate ABC transpo 100.0 5.7E-35 1.2E-39 330.4 22.4 204 594-808 3-235 (250)
275 PRK14256 phosphate ABC transpo 100.0 9E-35 1.9E-39 329.1 23.4 205 593-808 3-237 (252)
276 PRK14253 phosphate ABC transpo 100.0 8.3E-35 1.8E-39 328.9 23.1 203 594-807 3-233 (249)
277 TIGR01277 thiQ thiamine ABC tr 100.0 9.4E-35 2E-39 320.4 23.0 190 596-801 2-212 (213)
278 PRK11701 phnK phosphonate C-P 100.0 8.9E-35 1.9E-39 330.2 23.4 206 594-808 6-242 (258)
279 COG1137 YhbG ABC-type (unclass 100.0 4.3E-36 9.3E-41 305.9 11.2 208 594-809 4-230 (243)
280 cd03300 ABC_PotA_N PotA is an 100.0 5.6E-35 1.2E-39 326.4 21.3 200 595-808 1-221 (232)
281 PRK14261 phosphate ABC transpo 100.0 9.6E-35 2.1E-39 329.0 23.2 204 594-808 6-238 (253)
282 PRK15093 antimicrobial peptide 100.0 7.2E-35 1.6E-39 340.9 22.9 208 594-809 3-250 (330)
283 COG4178 ABC-type uncharacteriz 100.0 1E-31 2.3E-36 322.3 50.0 437 339-791 107-586 (604)
284 cd03299 ABC_ModC_like Archeal 100.0 1.1E-34 2.4E-39 324.5 22.9 199 595-808 1-220 (235)
285 PRK13546 teichoic acids export 100.0 1.7E-34 3.7E-39 326.9 24.6 209 593-812 3-237 (264)
286 PRK14254 phosphate ABC transpo 100.0 1E-34 2.2E-39 333.3 23.0 206 592-808 37-270 (285)
287 PRK15056 manganese/iron transp 100.0 1.3E-34 2.8E-39 331.0 23.5 200 594-807 6-230 (272)
288 PRK14252 phosphate ABC transpo 100.0 1.5E-34 3.3E-39 329.4 24.0 204 593-807 15-249 (265)
289 PRK10418 nikD nickel transport 100.0 2.1E-34 4.5E-39 326.2 24.9 204 594-809 4-232 (254)
290 PRK14275 phosphate ABC transpo 100.0 1.1E-34 2.4E-39 333.4 22.8 206 592-808 37-271 (286)
291 PRK09473 oppD oligopeptide tra 100.0 9.9E-35 2.2E-39 338.8 22.7 210 592-809 10-253 (330)
292 PRK13547 hmuV hemin importer A 100.0 1.5E-34 3.3E-39 329.0 23.5 199 595-807 2-244 (272)
293 PRK14265 phosphate ABC transpo 100.0 2.4E-34 5.1E-39 328.8 24.7 206 592-808 18-259 (274)
294 PRK14271 phosphate ABC transpo 100.0 1.4E-34 3.1E-39 330.8 22.7 205 593-808 20-252 (276)
295 PRK14260 phosphate ABC transpo 100.0 1.5E-34 3.3E-39 328.3 22.8 204 594-808 7-244 (259)
296 PRK14266 phosphate ABC transpo 100.0 1.4E-34 3.1E-39 327.2 22.4 204 594-808 3-235 (250)
297 PRK14263 phosphate ABC transpo 100.0 2.1E-34 4.5E-39 326.9 23.7 205 593-808 7-246 (261)
298 PRK14264 phosphate ABC transpo 100.0 2.1E-34 4.5E-39 333.9 23.8 205 593-808 44-290 (305)
299 PRK14241 phosphate transporter 100.0 1.9E-34 4.1E-39 327.5 22.8 204 594-808 4-243 (258)
300 cd03234 ABCG_White The White s 100.0 1.6E-34 3.6E-39 321.5 21.8 200 594-800 3-226 (226)
301 PRK14258 phosphate ABC transpo 100.0 2.4E-34 5.1E-39 327.0 22.8 205 594-808 7-246 (261)
302 PRK14272 phosphate ABC transpo 100.0 2.5E-34 5.4E-39 325.6 22.8 204 594-808 4-237 (252)
303 TIGR02142 modC_ABC molybdenum 100.0 2.2E-34 4.9E-39 340.0 23.3 195 599-809 4-223 (354)
304 PRK10419 nikE nickel transport 100.0 2.5E-34 5.5E-39 327.7 22.8 207 594-810 3-244 (268)
305 PRK14255 phosphate ABC transpo 100.0 3.2E-34 7E-39 324.7 22.9 204 594-808 5-237 (252)
306 cd03297 ABC_ModC_molybdenum_tr 100.0 2.7E-34 5.8E-39 317.1 20.9 185 599-800 5-214 (214)
307 TIGR02982 heterocyst_DevA ABC 100.0 3E-34 6.6E-39 318.0 21.2 191 595-796 2-219 (220)
308 cd03213 ABCG_EPDR ABCG transpo 100.0 3.3E-34 7.2E-39 310.9 21.0 174 594-800 3-194 (194)
309 COG4559 ABC-type hemin transpo 100.0 2.4E-34 5.2E-39 295.7 18.2 204 595-808 2-231 (259)
310 cd03230 ABC_DR_subfamily_A Thi 100.0 4.4E-34 9.5E-39 304.4 20.8 159 595-796 1-173 (173)
311 TIGR02323 CP_lyasePhnK phospho 100.0 6.3E-34 1.4E-38 322.5 23.2 205 594-808 3-239 (253)
312 PRK13545 tagH teichoic acids e 100.0 9.3E-34 2E-38 337.4 25.5 205 593-808 20-233 (549)
313 COG4181 Predicted ABC-type tra 100.0 1.7E-34 3.6E-39 286.4 15.7 194 594-798 6-226 (228)
314 cd03233 ABC_PDR_domain1 The pl 100.0 6E-34 1.3E-38 310.9 21.7 180 594-800 3-202 (202)
315 TIGR02770 nickel_nikD nickel i 100.0 5.2E-34 1.1E-38 318.3 21.6 189 612-808 1-216 (230)
316 COG4525 TauB ABC-type taurine 100.0 2.6E-34 5.7E-39 290.8 16.4 195 596-802 5-219 (259)
317 TIGR01184 ntrCD nitrate transp 100.0 4.5E-34 9.8E-39 318.5 20.0 182 613-805 1-202 (230)
318 cd03232 ABC_PDR_domain2 The pl 100.0 6.2E-34 1.3E-38 308.4 20.2 174 594-800 3-192 (192)
319 PRK14246 phosphate ABC transpo 100.0 1.3E-33 2.9E-38 319.5 23.1 206 592-808 8-242 (257)
320 COG1123 ATPase components of v 100.0 1.3E-33 2.8E-38 334.7 23.5 214 592-815 278-528 (539)
321 cd03215 ABC_Carb_Monos_II This 100.0 7.2E-34 1.6E-38 305.3 19.4 160 594-796 4-182 (182)
322 TIGR03608 L_ocin_972_ABC putat 100.0 6.2E-34 1.3E-38 312.5 19.1 181 597-791 1-206 (206)
323 COG4598 HisP ABC-type histidin 100.0 2.1E-34 4.5E-39 287.3 13.7 204 593-810 5-244 (256)
324 cd03229 ABC_Class3 This class 100.0 1.1E-33 2.3E-38 302.8 20.0 160 595-795 1-178 (178)
325 PRK03695 vitamin B12-transport 100.0 1.9E-33 4E-38 317.0 22.6 193 596-807 2-222 (248)
326 cd03228 ABCC_MRP_Like The MRP 100.0 1.3E-33 2.9E-38 300.1 20.2 158 595-795 1-171 (171)
327 COG0411 LivG ABC-type branched 100.0 3.6E-34 7.8E-39 304.0 15.7 202 595-810 5-242 (250)
328 PRK10261 glutathione transport 100.0 1.5E-33 3.3E-38 356.7 24.2 206 593-808 312-554 (623)
329 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.4E-33 3.1E-38 313.0 20.4 192 595-800 23-224 (224)
330 CHL00131 ycf16 sulfate ABC tra 100.0 3.7E-33 8E-38 316.1 24.1 198 594-804 7-238 (252)
331 cd03267 ABC_NatA_like Similar 100.0 1.5E-33 3.3E-38 315.5 20.5 180 610-800 34-236 (236)
332 PRK13538 cytochrome c biogenes 100.0 2.2E-33 4.7E-38 307.3 20.9 183 595-791 2-202 (204)
333 COG4161 ArtP ABC-type arginine 100.0 9.4E-34 2E-38 277.6 15.4 201 594-808 2-231 (242)
334 COG4604 CeuD ABC-type enteroch 100.0 1.8E-34 3.9E-39 292.8 10.3 200 595-808 2-226 (252)
335 COG4619 ABC-type uncharacteriz 100.0 5.8E-34 1.3E-38 281.7 13.7 179 609-797 15-213 (223)
336 PRK13543 cytochrome c biogenes 100.0 4.9E-33 1.1E-37 306.8 22.3 187 593-793 10-212 (214)
337 COG0444 DppD ABC-type dipeptid 100.0 2.8E-33 6E-38 310.3 19.8 208 595-810 2-246 (316)
338 PRK09580 sufC cysteine desulfu 100.0 8.5E-33 1.8E-37 312.4 24.0 198 595-805 2-233 (248)
339 PRK13540 cytochrome c biogenes 100.0 4.1E-33 8.9E-38 304.2 20.7 182 595-790 2-198 (200)
340 cd03217 ABC_FeS_Assembly ABC-t 100.0 4.6E-33 1E-37 303.5 21.1 172 595-805 1-191 (200)
341 cd03231 ABC_CcmA_heme_exporter 100.0 6.2E-33 1.3E-37 302.9 22.0 183 595-791 1-198 (201)
342 cd03214 ABC_Iron-Siderophores_ 100.0 3.5E-33 7.7E-38 299.4 17.8 178 596-800 1-180 (180)
343 PRK15134 microcin C ABC transp 100.0 5.3E-33 1.2E-37 347.2 21.9 205 593-808 274-516 (529)
344 PRK13549 xylose transporter AT 100.0 2.8E-33 6.1E-38 347.8 18.8 203 593-805 258-492 (506)
345 TIGR03269 met_CoM_red_A2 methy 100.0 8.4E-33 1.8E-37 344.9 22.9 209 593-807 278-517 (520)
346 cd03216 ABC_Carb_Monos_I This 100.0 1E-32 2.3E-37 290.5 20.0 160 595-798 1-162 (163)
347 cd03237 ABC_RNaseL_inhibitor_d 100.0 1E-32 2.3E-37 309.3 21.2 192 602-806 1-206 (246)
348 PRK13539 cytochrome c biogenes 100.0 2E-32 4.4E-37 300.3 22.2 184 595-793 3-200 (207)
349 TIGR00955 3a01204 The Eye Pigm 100.0 4.9E-33 1.1E-37 351.8 19.6 196 608-806 36-255 (617)
350 COG4148 ModC ABC-type molybdat 100.0 4.5E-33 9.8E-38 296.6 16.1 184 615-809 16-220 (352)
351 TIGR03771 anch_rpt_ABC anchore 100.0 9.6E-33 2.1E-37 306.3 19.6 179 618-808 1-202 (223)
352 TIGR01257 rim_protein retinal- 100.0 1.3E-30 2.8E-35 350.9 43.2 206 591-808 1934-2160(2272)
353 TIGR02324 CP_lyasePhnL phospho 100.0 1.4E-32 3.1E-37 305.6 20.1 187 595-791 2-222 (224)
354 KOG0060 Long-chain acyl-CoA tr 100.0 1.2E-29 2.6E-34 294.3 44.4 452 331-793 135-641 (659)
355 PRK15064 ABC transporter ATP-b 100.0 3.5E-32 7.5E-37 339.9 24.6 200 593-808 318-526 (530)
356 PRK13541 cytochrome c biogenes 100.0 2.7E-32 5.8E-37 296.6 20.3 179 595-788 2-192 (195)
357 TIGR01189 ccmA heme ABC export 100.0 3.9E-32 8.4E-37 296.1 20.0 180 595-789 1-196 (198)
358 PRK09700 D-allose transporter 100.0 2.3E-32 5.1E-37 340.1 20.3 198 594-802 265-493 (510)
359 TIGR01166 cbiO cobalt transpor 100.0 2.4E-32 5.3E-37 295.8 17.3 161 610-781 5-189 (190)
360 PLN03211 ABC transporter G-25; 100.0 5.6E-32 1.2E-36 341.5 22.7 191 610-807 81-296 (659)
361 TIGR02633 xylG D-xylose ABC tr 100.0 2.3E-32 5.1E-37 339.5 18.7 201 594-804 257-489 (500)
362 COG4152 ABC-type uncharacteriz 100.0 2.7E-32 6E-37 285.9 16.0 205 594-808 2-220 (300)
363 PRK11288 araG L-arabinose tran 100.0 4.5E-32 9.7E-37 336.7 19.7 196 594-806 257-484 (501)
364 PRK15177 Vi polysaccharide exp 100.0 1.1E-31 2.5E-36 295.1 19.8 184 612-807 2-192 (213)
365 PRK10762 D-ribose transporter 100.0 5.2E-32 1.1E-36 336.1 18.7 194 594-805 257-482 (501)
366 KOG0927 Predicted transporter 100.0 3.4E-31 7.3E-36 305.1 22.6 207 592-808 73-310 (614)
367 COG4608 AppF ABC-type oligopep 100.0 1.1E-31 2.3E-36 291.8 17.6 190 594-810 4-202 (268)
368 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 2.6E-31 5.7E-36 273.6 18.9 141 595-795 1-144 (144)
369 TIGR01187 potA spermidine/putr 100.0 1.3E-31 2.8E-36 312.8 18.6 171 628-809 1-192 (325)
370 PRK11819 putative ABC transpor 100.0 6.2E-31 1.3E-35 329.7 24.9 200 593-808 323-534 (556)
371 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 5.1E-31 1.1E-35 330.5 24.1 199 593-807 321-531 (552)
372 PRK15439 autoinducer 2 ABC tra 100.0 1.4E-31 3.1E-36 332.3 18.8 195 594-806 268-491 (510)
373 PRK10636 putative ABC transpor 100.0 5.5E-31 1.2E-35 333.6 24.0 199 592-806 310-516 (638)
374 PRK11147 ABC transporter ATPas 100.0 9.7E-31 2.1E-35 332.3 24.3 200 592-807 317-528 (635)
375 COG4172 ABC-type uncharacteriz 100.0 9.7E-31 2.1E-35 290.7 21.0 207 593-810 275-519 (534)
376 PLN03073 ABC transporter F fam 100.0 1.2E-30 2.6E-35 330.9 24.6 198 593-806 507-713 (718)
377 PRK13409 putative ATPase RIL; 100.0 7.3E-31 1.6E-35 327.5 22.1 193 593-801 339-536 (590)
378 PRK10535 macrolide transporter 100.0 1.2E-30 2.5E-35 331.6 23.6 202 594-806 4-231 (648)
379 COG1134 TagH ABC-type polysacc 100.0 1.5E-30 3.3E-35 276.9 19.8 188 609-807 39-236 (249)
380 cd03222 ABC_RNaseL_inhibitor T 100.0 7.4E-31 1.6E-35 277.8 16.7 154 598-806 4-162 (177)
381 PRK10938 putative molybdenum t 100.0 9E-31 2E-35 324.5 18.5 194 593-799 259-484 (490)
382 PRK10982 galactose/methyl gala 100.0 1.3E-30 2.8E-35 323.1 19.1 201 593-804 249-477 (491)
383 cd03236 ABC_RNaseL_inhibitor_d 100.0 1.6E-30 3.4E-35 292.9 17.4 186 599-799 5-219 (255)
384 TIGR00956 3a01205 Pleiotropic 100.0 3.1E-30 6.8E-35 349.3 22.6 204 594-804 759-990 (1394)
385 cd03238 ABC_UvrA The excision 100.0 3.8E-30 8.3E-35 272.1 18.0 150 609-796 7-166 (176)
386 COG1119 ModF ABC-type molybden 100.0 2.6E-30 5.7E-35 274.5 12.8 197 591-801 28-256 (257)
387 COG1101 PhnK ABC-type uncharac 100.0 6E-30 1.3E-34 263.9 14.6 189 609-799 18-230 (263)
388 COG4615 PvdE ABC-type sideroph 100.0 3.9E-26 8.5E-31 253.1 40.5 376 940-1333 53-435 (546)
389 COG4136 ABC-type uncharacteriz 100.0 5.8E-29 1.3E-33 241.5 15.3 183 595-791 3-207 (213)
390 COG4167 SapF ABC-type antimicr 100.0 3.8E-29 8.2E-34 250.3 14.3 188 610-809 26-241 (267)
391 cd00267 ABC_ATPase ABC (ATP-bi 100.0 1.1E-28 2.5E-33 258.6 18.7 142 597-795 2-157 (157)
392 PLN03140 ABC transporter G fam 100.0 1.4E-28 3.1E-33 331.4 24.2 204 594-804 867-1107(1470)
393 COG0488 Uup ATPase components 100.0 1.3E-27 2.8E-32 290.3 25.3 202 591-808 318-526 (530)
394 COG4674 Uncharacterized ABC-ty 100.0 2.7E-28 5.8E-33 247.7 14.5 200 593-808 4-236 (249)
395 KOG0062 ATPase component of AB 100.0 1.9E-27 4.1E-32 272.9 20.3 193 592-807 78-285 (582)
396 cd03289 ABCC_CFTR2 The CFTR su 99.9 6.9E-28 1.5E-32 274.0 14.2 138 1214-1352 1-142 (275)
397 COG4586 ABC-type uncharacteriz 99.9 6.5E-28 1.4E-32 257.3 13.0 187 609-808 36-247 (325)
398 cd03270 ABC_UvrA_I The excisio 99.9 5.1E-27 1.1E-31 260.6 18.0 180 609-800 7-226 (226)
399 KOG0061 Transporter, ABC super 99.9 7.2E-27 1.6E-31 292.1 20.3 207 593-806 24-259 (613)
400 KOG0065 Pleiotropic drug resis 99.9 1.5E-25 3.3E-30 282.5 31.1 190 610-806 128-350 (1391)
401 COG4107 PhnK ABC-type phosphon 99.9 2E-26 4.3E-31 229.0 16.4 217 594-816 6-251 (258)
402 COG0396 sufC Cysteine desulfur 99.9 7.5E-26 1.6E-30 237.5 20.5 200 595-806 4-232 (251)
403 cd03271 ABC_UvrA_II The excisi 99.9 6.8E-26 1.5E-30 253.7 16.7 182 611-802 9-261 (261)
404 COG4133 CcmA ABC-type transpor 99.9 5.6E-26 1.2E-30 231.1 14.4 165 609-784 14-195 (209)
405 PRK00635 excinuclease ABC subu 99.9 7.1E-25 1.5E-29 291.4 28.1 94 713-806 803-905 (1809)
406 PRK14257 phosphate ABC transpo 99.9 7.6E-26 1.7E-30 263.8 14.7 171 1179-1352 35-229 (329)
407 PF00005 ABC_tran: ABC transpo 99.9 7.4E-26 1.6E-30 231.7 11.7 123 613-748 1-137 (137)
408 KOG0064 Peroxisomal long-chain 99.9 4.8E-21 1E-25 219.3 46.6 452 325-791 164-681 (728)
409 KOG0059 Lipid exporter ABCA1 a 99.9 8.4E-25 1.8E-29 285.3 17.9 203 593-808 563-788 (885)
410 COG4778 PhnL ABC-type phosphon 99.9 2.7E-25 5.9E-30 220.6 9.7 188 595-792 5-226 (235)
411 cd03278 ABC_SMC_barmotin Barmo 99.9 1.9E-24 4.2E-29 234.3 14.0 153 614-792 14-189 (197)
412 COG4178 ABC-type uncharacteriz 99.9 3.2E-21 7E-26 232.3 41.7 386 937-1340 88-508 (604)
413 KOG0927 Predicted transporter 99.9 2.9E-24 6.3E-29 248.1 11.3 200 592-806 387-595 (614)
414 cd03279 ABC_sbcCD SbcCD and ot 99.9 9.1E-23 2E-27 224.8 15.7 180 594-796 5-211 (213)
415 cd03240 ABC_Rad50 The catalyti 99.9 9.9E-23 2.1E-27 222.4 14.8 154 616-793 16-197 (204)
416 cd03244 ABCC_MRP_domain2 Domai 99.9 1.7E-22 3.7E-27 224.3 14.5 138 1214-1351 1-142 (221)
417 KOG0066 eIF2-interacting prote 99.9 4.5E-22 9.7E-27 221.8 16.8 200 594-805 264-497 (807)
418 cd03272 ABC_SMC3_euk Eukaryoti 99.9 1.8E-22 4E-27 227.5 14.0 177 610-792 15-234 (243)
419 COG1129 MglA ABC-type sugar tr 99.9 5E-22 1.1E-26 235.1 17.1 184 612-801 274-484 (500)
420 cd03288 ABCC_SUR2 The SUR doma 99.9 4E-22 8.6E-27 226.3 14.8 141 1212-1352 16-160 (257)
421 PRK00349 uvrA excinuclease ABC 99.9 9.4E-22 2E-26 253.0 19.8 108 702-810 814-930 (943)
422 cd03273 ABC_SMC2_euk Eukaryoti 99.9 6E-22 1.3E-26 224.0 13.6 169 623-792 25-242 (251)
423 cd03275 ABC_SMC1_euk Eukaryoti 99.9 5.5E-22 1.2E-26 223.6 11.0 173 619-792 19-232 (247)
424 COG4138 BtuD ABC-type cobalami 99.9 1.8E-22 3.9E-27 201.4 4.8 184 612-808 14-222 (248)
425 cd03369 ABCC_NFT1 Domain 2 of 99.9 2.2E-21 4.7E-26 213.2 13.9 118 1210-1327 1-118 (207)
426 COG2884 FtsE Predicted ATPase 99.9 7E-22 1.5E-26 201.1 7.8 134 1216-1351 2-146 (223)
427 KOG0065 Pleiotropic drug resis 99.9 9E-22 2E-26 248.8 10.1 189 609-804 803-1018(1391)
428 TIGR00630 uvra excinuclease AB 99.8 8.7E-21 1.9E-25 243.7 18.6 93 713-805 822-923 (924)
429 KOG0066 eIF2-interacting prote 99.8 6.1E-21 1.3E-25 212.8 14.8 199 593-806 585-790 (807)
430 KOG0062 ATPase component of AB 99.8 5.4E-21 1.2E-25 220.1 14.0 200 592-805 360-567 (582)
431 COG1125 OpuBA ABC-type proline 99.8 2.3E-21 5.1E-26 205.5 9.0 134 1216-1352 2-145 (309)
432 cd03252 ABCC_Hemolysin The ABC 99.8 8.5E-21 1.8E-25 213.1 13.6 137 1216-1352 1-142 (237)
433 COG1126 GlnQ ABC-type polar am 99.8 8.7E-21 1.9E-25 197.8 10.5 128 1215-1344 2-139 (240)
434 cd03254 ABCC_Glucan_exporter_l 99.8 1.6E-20 3.4E-25 209.7 13.3 130 1214-1344 1-131 (229)
435 PF00664 ABC_membrane: ABC tra 99.8 6.2E-18 1.3E-22 191.6 34.1 222 946-1167 52-275 (275)
436 COG1135 AbcC ABC-type metal io 99.8 1.9E-20 4E-25 205.0 12.4 131 1216-1346 2-146 (339)
437 cd03274 ABC_SMC4_euk Eukaryoti 99.8 1.6E-21 3.4E-26 213.9 4.1 181 595-793 6-204 (212)
438 cd03250 ABCC_MRP_domain1 Domai 99.8 2.3E-20 5E-25 204.6 12.6 123 1216-1351 1-130 (204)
439 COG1245 Predicted ATPase, RNas 99.8 4.1E-20 8.8E-25 209.3 14.8 179 599-792 340-530 (591)
440 cd03248 ABCC_TAP TAP, the Tran 99.8 3.3E-20 7.3E-25 206.7 13.3 140 1212-1351 8-153 (226)
441 cd03253 ABCC_ATM1_transporter 99.8 3.6E-20 7.9E-25 207.9 13.6 135 1216-1351 1-140 (236)
442 cd03276 ABC_SMC6_euk Eukaryoti 99.8 6.2E-20 1.3E-24 199.3 14.6 159 613-795 12-192 (198)
443 COG1117 PstB ABC-type phosphat 99.8 2E-20 4.3E-25 194.0 9.6 132 1214-1350 6-151 (253)
444 cd03245 ABCC_bacteriocin_expor 99.8 7.1E-20 1.5E-24 203.2 14.4 132 1214-1345 1-133 (220)
445 cd03251 ABCC_MsbA MsbA is an e 99.8 6.5E-20 1.4E-24 205.5 13.9 129 1216-1344 1-130 (234)
446 COG3638 ABC-type phosphate/pho 99.8 3.6E-20 7.9E-25 195.6 10.4 136 1215-1352 3-157 (258)
447 cd03239 ABC_SMC_head The struc 99.8 6.1E-20 1.3E-24 195.7 12.0 153 615-793 14-172 (178)
448 KOG2355 Predicted ABC-type tra 99.8 3.7E-19 8.1E-24 182.2 16.3 200 591-806 10-236 (291)
449 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 1.1E-19 2.3E-24 204.4 12.9 129 1216-1344 1-131 (238)
450 cd03290 ABCC_SUR1_N The SUR do 99.8 1.2E-19 2.6E-24 201.0 12.7 135 1216-1351 1-143 (218)
451 TIGR00960 3a0501s02 Type II (G 99.8 6.7E-20 1.5E-24 202.8 10.5 127 1216-1342 2-139 (216)
452 COG3839 MalK ABC-type sugar tr 99.8 1.8E-19 4E-24 205.6 12.6 127 1215-1345 3-137 (338)
453 COG3845 ABC-type uncharacteriz 99.8 1.3E-18 2.7E-23 201.6 18.8 205 592-804 255-489 (501)
454 COG1127 Ttg2A ABC-type transpo 99.8 2E-19 4.2E-24 190.7 11.0 127 1214-1342 7-146 (263)
455 PRK13650 cbiO cobalt transport 99.8 2E-19 4.2E-24 206.5 11.4 128 1215-1342 4-141 (279)
456 PRK14269 phosphate ABC transpo 99.8 1.8E-19 4E-24 203.3 11.0 121 1215-1337 2-134 (246)
457 PRK13647 cbiO cobalt transport 99.8 1.7E-19 3.6E-24 206.6 10.8 127 1215-1342 4-139 (274)
458 COG1120 FepC ABC-type cobalami 99.8 3.2E-19 7E-24 196.2 11.9 121 1215-1337 2-134 (258)
459 COG1122 CbiO ABC-type cobalt t 99.8 4.4E-19 9.6E-24 195.4 12.8 136 1215-1352 3-148 (235)
460 cd03260 ABC_PstB_phosphate_tra 99.8 1.6E-19 3.5E-24 201.3 9.1 122 1216-1339 1-137 (227)
461 PRK13635 cbiO cobalt transport 99.8 2.9E-19 6.4E-24 205.0 11.4 128 1215-1342 5-141 (279)
462 PRK14250 phosphate ABC transpo 99.8 3.2E-19 6.9E-24 200.7 11.4 124 1215-1340 3-130 (241)
463 TIGR02314 ABC_MetN D-methionin 99.8 3.7E-19 8E-24 208.1 11.7 127 1216-1342 2-141 (343)
464 PF00664 ABC_membrane: ABC tra 99.8 7.1E-16 1.5E-20 174.6 38.1 269 280-549 2-275 (275)
465 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 3E-19 6.6E-24 197.9 10.2 127 1216-1342 1-141 (218)
466 cd03226 ABC_cobalt_CbiO_domain 99.8 3.3E-19 7.2E-24 195.6 10.3 122 1217-1342 1-127 (205)
467 PRK13632 cbiO cobalt transport 99.8 5.9E-19 1.3E-23 201.9 12.7 128 1215-1342 7-143 (271)
468 COG3842 PotA ABC-type spermidi 99.8 3.2E-19 6.9E-24 204.7 10.3 133 1214-1351 4-145 (352)
469 PRK11629 lolD lipoprotein tran 99.8 3.5E-19 7.6E-24 199.4 10.2 127 1215-1341 5-145 (233)
470 KOG0060 Long-chain acyl-CoA tr 99.8 2.5E-16 5.5E-21 184.2 34.0 255 1079-1344 270-561 (659)
471 TIGR02673 FtsE cell division A 99.8 4.4E-19 9.6E-24 196.0 10.8 126 1216-1342 2-138 (214)
472 PRK13631 cbiO cobalt transport 99.8 5E-19 1.1E-23 206.1 11.6 124 1214-1337 20-172 (320)
473 cd03263 ABC_subfamily_A The AB 99.8 4.6E-19 9.9E-24 196.7 10.6 123 1216-1339 1-131 (220)
474 cd03292 ABC_FtsE_transporter F 99.8 3.6E-19 7.8E-24 196.7 9.6 126 1216-1342 1-137 (214)
475 cd03261 ABC_Org_Solvent_Resist 99.8 4.7E-19 1E-23 198.7 10.6 124 1216-1341 1-136 (235)
476 PRK13637 cbiO cobalt transport 99.8 5.1E-19 1.1E-23 203.8 11.1 118 1215-1332 2-133 (287)
477 cd03266 ABC_NatA_sodium_export 99.8 5.8E-19 1.3E-23 195.6 11.0 124 1216-1340 2-135 (218)
478 PRK10247 putative ABC transpor 99.8 6.9E-19 1.5E-23 195.8 11.4 117 1215-1333 7-128 (225)
479 cd03225 ABC_cobalt_CbiO_domain 99.8 5.5E-19 1.2E-23 194.8 10.1 125 1217-1341 1-134 (211)
480 COG1136 SalX ABC-type antimicr 99.8 9E-19 1.9E-23 189.1 11.4 135 1216-1351 2-151 (226)
481 PRK10744 pstB phosphate transp 99.8 9.9E-19 2.1E-23 199.0 12.3 121 1213-1335 11-146 (260)
482 PRK13652 cbiO cobalt transport 99.8 9.6E-19 2.1E-23 200.7 12.3 126 1216-1342 4-138 (277)
483 PRK13640 cbiO cobalt transport 99.8 1.2E-18 2.7E-23 200.3 13.1 129 1214-1342 4-144 (282)
484 PRK13646 cbiO cobalt transport 99.8 6E-19 1.3E-23 203.3 10.5 125 1215-1339 2-143 (286)
485 PRK10908 cell division protein 99.8 1.4E-18 3.1E-23 193.0 12.5 125 1216-1341 2-137 (222)
486 PRK14259 phosphate ABC transpo 99.8 1.3E-18 2.8E-23 198.7 12.4 120 1213-1334 11-143 (269)
487 cd03256 ABC_PhnC_transporter A 99.8 9.5E-19 2.1E-23 197.1 11.1 124 1216-1340 1-143 (241)
488 cd03246 ABCC_Protease_Secretio 99.8 1.1E-18 2.4E-23 186.0 11.0 96 1216-1311 1-96 (173)
489 cd03268 ABC_BcrA_bacitracin_re 99.8 7.3E-19 1.6E-23 193.4 9.8 121 1216-1340 1-125 (208)
490 PRK13643 cbiO cobalt transport 99.8 9.3E-19 2E-23 201.8 11.0 125 1216-1340 2-143 (288)
491 COG4619 ABC-type uncharacteriz 99.8 4.6E-19 1E-23 176.4 7.2 126 1223-1348 9-139 (223)
492 TIGR02315 ABC_phnC phosphonate 99.8 1.2E-18 2.6E-23 196.4 11.5 124 1216-1340 2-144 (243)
493 cd03258 ABC_MetN_methionine_tr 99.8 8.8E-19 1.9E-23 196.2 10.2 127 1216-1342 2-141 (233)
494 PRK10584 putative ABC transpor 99.8 1.6E-18 3.4E-23 193.6 12.0 128 1215-1342 6-147 (228)
495 PRK13636 cbiO cobalt transport 99.8 1.3E-18 2.9E-23 200.0 11.4 124 1215-1339 5-139 (283)
496 TIGR02211 LolD_lipo_ex lipopro 99.8 1.7E-18 3.7E-23 192.3 11.8 125 1216-1340 2-140 (221)
497 cd03259 ABC_Carb_Solutes_like 99.8 1E-18 2.2E-23 193.0 9.6 123 1216-1342 1-131 (213)
498 PRK10575 iron-hydroxamate tran 99.8 1.4E-18 3.1E-23 198.2 11.0 126 1215-1342 11-148 (265)
499 PRK13642 cbiO cobalt transport 99.8 1.9E-18 4.2E-23 198.2 12.0 127 1215-1341 4-140 (277)
500 cd03247 ABCC_cytochrome_bd The 99.8 1.7E-18 3.8E-23 185.4 10.8 95 1216-1311 1-95 (178)
No 1
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-245 Score=2318.40 Aligned_cols=1145 Identities=45% Similarity=0.741 Sum_probs=1058.1
Q ss_pred CCCCccCCh--hHHHHHHhHHHHHHhhcCCCCCCCCCCCCCccCcHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHH
Q 000680 197 QTELGKAGL--LRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNV 274 (1354)
Q Consensus 197 ~~p~~~a~~--~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~ 274 (1354)
++|.+.++. +|++||||++|++++|||++|+.+|+|+++++|+++.+.++|++.|+++.++. ++.|+++++++++
T Consensus 122 ~~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~~---~~~psl~~al~~~ 198 (1381)
T KOG0054|consen 122 PNPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELGRS---GKKPSLLRALLRT 198 (1381)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhccc---cCCcHHHHHHHHH
Confidence 345555555 99999999999999999999999999999999999999999999999876432 2578999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALM 354 (1354)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~ 354 (1354)
||+++++.+++..+.+...|++|++|+.+++|.++++.+.+.||.|+++++++.++++++.+||+|..+++|+|+|++++
T Consensus 199 f~~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~ 278 (1381)
T KOG0054|consen 199 FGRTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALI 278 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHH
Confidence 99999999999999999999999999999999988777788999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000680 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLN 434 (1354)
Q Consensus 355 ~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~i~~~l~ 434 (1354)
++||+|+|++++.+++++++|+|+|+||+|++|+++++.++|.+|++|+|+++++++||+++|+++++|++++++++|+|
T Consensus 279 ~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n 358 (1381)
T KOG0054|consen 279 SAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLN 358 (1381)
T ss_pred HHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 435 VPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTII 514 (1354)
Q Consensus 435 ~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~p~~v 514 (1354)
.+++++++++|++.|+.+|+|+++|||+|+|||+|||||||++|.++|+++|++|++++||..+..+++.++++++|+++
T Consensus 359 ~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv 438 (1381)
T KOG0054|consen 359 SFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLV 438 (1381)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhhccccCCCCc
Q 000680 515 SSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRS 594 (1354)
Q Consensus 515 ~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~ 594 (1354)
++++|++|++..++.+|+++|||++++||+|+.|+.++|+.++.++|++||++|+++||..+|.+++..++.+....+.+
T Consensus 439 ~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~ 518 (1381)
T KOG0054|consen 439 SVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENA 518 (1381)
T ss_pred HHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCce
Confidence 99999999953348999999999999999999999999999999999999999999999999998766654444556678
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCCCCCCCcH
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSI 674 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~i~yv~Q~~~~~~~ti 674 (1354)
|+++|++|+|+++.+.++|+||||+|++|+++||||++||||||||++|+||+++.+|+|.++|++|||||+|||+|+||
T Consensus 519 i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTv 598 (1381)
T KOG0054|consen 519 IEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTV 598 (1381)
T ss_pred EEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcH
Confidence 99999999999865667999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHH
Q 000680 675 RDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754 (1354)
Q Consensus 675 ~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~ 754 (1354)
||||+||.+||++||++|+++|+|++|++.||.||+|+|||||.||||||||||+||||+|+|+||||||||+||||+|+
T Consensus 599 reNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahv 678 (1381)
T KOG0054|consen 599 RENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHV 678 (1381)
T ss_pred HHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcCchHHHHHHHhhhhcccCCCCCCCCC
Q 000680 755 AATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQ 834 (1354)
Q Consensus 755 ~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (1354)
++|||++|+++.+++||+|+|||+++++++||.|++|+||+|.+.|+|+|+++.+..+.++..+.........+.+
T Consensus 679 g~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~~~~~~~~~~~~~---- 754 (1381)
T KOG0054|consen 679 GKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHEEESEQEEEASEK---- 754 (1381)
T ss_pred hHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhccchhhccccccc----
Confidence 9999999999999999999999999999999999999999999999999999988888887433221111100000
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCccc-cccccccCCcchHHHHhhccccHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 000680 835 GGAEKVEKGRTARPEEPNGIYPRKESSEG-EISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFV 913 (1354)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~l~~~~~~~~~ 913 (1354)
..+..+.. ...+.......+...+. ....+...++.++|+++.|.|+|++|+.|+++.+|+..+++.+++.+..+
T Consensus 755 -~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~ 830 (1381)
T KOG0054|consen 755 -DLESGESS---RESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQ 830 (1381)
T ss_pred -cccccccc---cchhhhhhhhhcccccccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 00000000 00000000000000000 00111124566788899999999999999998778877777788888899
Q ss_pred HHHHhHHHHHHhhhcCCC------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Q 000680 914 GLQAAATYWLAYAIQIPK------ITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFD 987 (1354)
Q Consensus 914 ~~~~~~~~wl~~~~~~~~------~~~~~~~~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd 987 (1354)
.+..+.+||+++|++... ....+|+++|+++++++.++.+++++.+...++++|++||++|+++++|+||+|||
T Consensus 831 ~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFd 910 (1381)
T KOG0054|consen 831 VLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFD 910 (1381)
T ss_pred HHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcC
Confidence 999999999999997642 34568999999999999999999999999999999999999999999999999999
Q ss_pred ccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000680 988 STPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRING 1067 (1354)
Q Consensus 988 ~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l~~l~~~~~~~~i~~~y~~~sr~l~rl~~ 1067 (1354)
+||+|||+||||+|++.+|..+|..+..++.++++++++++++++++|+++++++|+.++++++++||++++||+||+++
T Consensus 911 tTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLes 990 (1381)
T KOG0054|consen 911 TTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLES 990 (1381)
T ss_pred CCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 000680 1068 TTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGY 1147 (1354)
Q Consensus 1068 ~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~vl~~~g~ 1147 (1354)
.+|||+++||+||++|+.|||||++|++|.+++.+++|.+++++|....++||+++|+|++++++++++++++++...+.
T Consensus 991 itRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~ 1070 (1381)
T KOG0054|consen 991 ITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGL 1070 (1381)
T ss_pred cccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888766555
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCC
Q 000680 1148 VAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRP 1227 (1354)
Q Consensus 1148 ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~ 1227 (1354)
.++|.+|++++|++++++.++|++|+.+++|++|+|||||.||.++|+|+|+..+..+||++||.+|+|+|+|+++||+|
T Consensus 1071 ~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp 1150 (1381)
T KOG0054|consen 1071 ISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRP 1150 (1381)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCC
Confidence 88999999999999999999999999999999999999999999999997776666669999999999999999999999
Q ss_pred CCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccccccccch
Q 000680 1228 NAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSV 1307 (1354)
Q Consensus 1228 ~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTI 1307 (1354)
+.|+|||||||+|+||||||||||||||||||+++|||+.||.+|+|.|||+||++++|||||++++||||||+||+||+
T Consensus 1151 ~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTv 1230 (1381)
T KOG0054|consen 1151 NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTV 1230 (1381)
T ss_pred CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1308 RTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1308 R~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
|+||||+++|||+|||+|||+|||+++|+++|+|||+ +|+|||+|
T Consensus 1231 R~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvG 1279 (1381)
T KOG0054|consen 1231 RFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVG 1279 (1381)
T ss_pred ccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChH
Confidence 9999999999999999999999999999999999999 79999997
No 2
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.4e-190 Score=1915.57 Aligned_cols=1313 Identities=30% Similarity=0.495 Sum_probs=1075.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhhhhhcc-CCCCcccc-hhHHHHHHHHHHHHHHHHHHHHHH---HhhhccCCc-
Q 000680 22 GSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKN-HNYGRIRR-ECVSIVVSACCAVVGIAYLGYCLW---NLIAKNDSS- 95 (1354)
Q Consensus 22 ~~~c~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~- 95 (1354)
.||||++++++|+|++|+|+++|.+++.. ++. +..++.++ .+.+....++..+.....++..+. ....+....
T Consensus 29 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (1622)
T PLN03130 29 YTPCATDSLVINISHLVLLGLCLYRIWLI-KKDHKVQRFCLRSKWYNYFLALLAAYCTAEPLFRLVMGISVLNLDGQTSL 107 (1622)
T ss_pred CCccHHhhHHHHHHHHHHHHHHHHHHHHh-ccccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 39999999999999999999999888743 331 22222222 222222222222222111211111 111111111
Q ss_pred chh-HH-HHHHHHHHHHHHHHHHH---H--hccchhHHHHHHHHHH---HHHHHHHHHHHHHhhcccccccchhhhHHHH
Q 000680 96 MSW-LV-STVRGLIWVSLAISLLV---K--RSKWIRMLITLWWMSF---SLLVLALNIEILARTYTINVVYILPLPVNLL 165 (1354)
Q Consensus 96 ~~~-~~-~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (1354)
.+. .. .....++|+.+.+++.. + +.+...+.+++||++. +++.............. ...++..+.+.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 186 (1622)
T PLN03130 108 PPFEIVSLIVEALTWCSMLVMIGVETKIYIREFRWYVRFAVIYVLVGDAVMLNLVLSVKEYYSSFV-LYLYISEVAAQVL 186 (1622)
T ss_pred ccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeehhHHHhhHHHHHHHHHHHHHHHhccc-cceehhHHHHHHH
Confidence 111 11 22234555433322221 1 2233346678899887 33332222221211110 1224444444443
Q ss_pred HHHHH-hhc-ccCCCCCCC------CCCCCCcccccccCCCCCccCChhHHHHHHhHHHHHHhhcCCCCCCCCCCCCCcc
Q 000680 166 LLFSA-FRN-FSHFTSPNR------EDKSLSEPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPE 237 (1354)
Q Consensus 166 ~~~~~-~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~p~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~ 237 (1354)
+.+.. +.. ..+...+.. ..+.+++|...+++++||++||++||++|||++|++++|||++|+.+|||+++++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~ 266 (1622)
T PLN03130 187 FGILLLVYFPNLDPYPGYTPIGSESVDDYEYEELPGGEQICPERHANIFSRIFFGWMTPLMQLGYKRPLTEKDVWKLDTW 266 (1622)
T ss_pred HHHHHHHHHhcCCCCcccccccccccccccccCCcccCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChh
Confidence 32222 111 111111110 1123455555667889999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHH
Q 000680 238 DEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEG 317 (1354)
Q Consensus 238 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g 317 (1354)
|+++.+.++|++.|+++.+ +++++++++++++|++.++..++++++.+++.+++|++++.+++++.+++ ..+.|
T Consensus 267 ~~~~~~~~~~~~~w~~~~~-----~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~-~~~~~ 340 (1622)
T PLN03130 267 DQTETLYRSFQKCWDEELK-----KPKPWLLRALNNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGE-PAWIG 340 (1622)
T ss_pred hhHHHHHHHHHHHHHHHhc-----cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cchHH
Confidence 9999999999999987642 13478999999999999999999999999999999999999999986543 23567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHHHHH
Q 000680 318 LSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHL 397 (1354)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~~~~ 397 (1354)
+.++++++++.++.+++.++|++...++++++|+++...+|+|.++++....++.++|+++|+|++|++++.+++..+|.
T Consensus 341 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~l~~ 420 (1622)
T PLN03130 341 YIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQLHT 420 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777778888888899999999999999999999999998888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHH
Q 000680 398 TWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEK 477 (1354)
Q Consensus 398 ~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~ 477 (1354)
+|.+|+++++++++||..+|+++++|++++++++|++..+++++++.++++++.+|+|++.++|+|+|||+||+|+||+.
T Consensus 421 l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~ 500 (1622)
T PLN03130 421 LWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENS 500 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 478 FKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALS 557 (1354)
Q Consensus 478 f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~ 557 (1354)
|.+++++.|++|++..++..+..++..+++...|.++++++|++|.+.+ +.+|++.+|+++++++.++.|+..+|..+.
T Consensus 501 ~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~~-g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~ 579 (1622)
T PLN03130 501 FQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLG-GDLTPARAFTSLSLFAVLRFPLFMLPNLIT 579 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888888878888888888899888776 789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCcchhhhccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHH
Q 000680 558 IMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKS 637 (1354)
Q Consensus 558 ~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKS 637 (1354)
.+.++++|++||++||..+|..+... .+.......|+++|++|+|+++.++++|+|+||+|++||+++|+||+|||||
T Consensus 580 ~~~~a~~s~~RI~~~L~~~e~~~~~~--~~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKS 657 (1622)
T PLN03130 580 QAVNANVSLKRLEELLLAEERVLLPN--PPLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKT 657 (1622)
T ss_pred HHHHHHHHHHHHHHHHcCcccccccC--CcccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHH
Confidence 99999999999999998766532111 1111123479999999999865456799999999999999999999999999
Q ss_pred HHHHHHhCCccCCC-cEEEEcCeEEEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCC
Q 000680 638 SLLYAILGEIPKIS-GTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1354)
Q Consensus 638 tLl~~i~g~~~~~~-G~i~~~g~i~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~ 716 (1354)
||+++|+|+++|.+ |+|.++++||||+|+||++++||||||+||.++++++|++++++|+|++|++.+|+||+|+|||+
T Consensus 658 TLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~ 737 (1622)
T PLN03130 658 SLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGER 737 (1622)
T ss_pred HHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCC
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeE
Q 000680 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1354)
Q Consensus 717 g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i 796 (1354)
|.+|||||||||+||||+|++||||||||||||||++++++++++++.+.+++||+|+|||+++.++.||+|++|++|+|
T Consensus 738 G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i 817 (1622)
T PLN03130 738 GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMI 817 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999999999887889999999999999999999999999999
Q ss_pred EEecChHHHHhcCchHHHHHHHhhhhcccCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCccccccccccCCcchH
Q 000680 797 TQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTED 876 (1354)
Q Consensus 797 ~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (1354)
+++|+++|++++++.+.++...+....+..+ . ......++.+ .......+. ...+ +.....+...+....+.++
T Consensus 818 ~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~-~--~~~~~~~~~~-~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~ 891 (1622)
T PLN03130 818 KEEGTYEELSNNGPLFQKLMENAGKMEEYVE-E--NGEEEDDQTS-SKPVANGNA-NNLK-KDSSSKKKSKEGKSVLIKQ 891 (1622)
T ss_pred EEeCCHHHHHhcchhHHHHHHhccccccccc-c--cccccccccc-ccccccccc-cccc-ccccccccccccchhhhhH
Confidence 9999999999888778777654321110000 0 0000000000 000000000 0000 0000000000011234567
Q ss_pred HHHhhccccHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCC---CcchHHHHHHHHHHHHHHHHHH
Q 000680 877 EEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPK---ITSGILIGVYAGVSTASAVFVY 953 (1354)
Q Consensus 877 e~~~~g~v~~~~y~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~~~---~~~~~~~~iy~~l~~~~~i~~~ 953 (1354)
|+++.|.++|++|+.|+++.++.+.+++++++.+....+..+.++|++.|.+... .....++++|++++++..++.+
T Consensus 892 e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~i~~~l~~~~~i~~~ 971 (1622)
T PLN03130 892 EERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVTL 971 (1622)
T ss_pred HHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999998666655555555666667778889999999986421 2245678889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 954 FRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFV 1033 (1354)
Q Consensus 954 ~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~ 1033 (1354)
++.++....+.++++++|++++++++++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++.+++++++
T Consensus 972 ~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~ 1051 (1622)
T PLN03130 972 LNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIV 1051 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHH
Q 000680 1034 TWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFH 1113 (1354)
Q Consensus 1034 ~~~l~l~~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~ 1113 (1354)
+|..+++++|+.+++++++++|.+++|+++|+++.+++|+++|++|+++|++|||+|+.+++|.+++.+..|.+.+..+.
T Consensus 1052 ~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~ 1131 (1622)
T PLN03130 1052 STISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLV 1131 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877788888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000680 1114 TNGVMEWLILRVEALQNLTLFTAALFLVLIPRGY-----VAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIK 1188 (1354)
Q Consensus 1114 ~~~~~~wl~~~l~~l~~~~~~~~~~~~vl~~~g~-----ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~ 1188 (1354)
....++|++.++++++.+++++.+.+.+. ..+. ..++.+|++++|++.+..++.++++.++++|+.++|+||+.
T Consensus 1132 ~~~~~~wl~~~l~~~~~~~i~~~~~~~v~-~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~ 1210 (1622)
T PLN03130 1132 NMSSNRWLAIRLETLGGLMIWLTASFAVM-QNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVG 1210 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887766555544332 2222 12688999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccC
Q 000680 1189 QFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE 1268 (1354)
Q Consensus 1189 e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e 1268 (1354)
+|++.|+|++...++..+++.||.+|.|+|+||+|+|+++.++|||||||+|+||||||||||||||||||+++|+|+||
T Consensus 1211 e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~ 1290 (1622)
T PLN03130 1211 TYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE 1290 (1622)
T ss_pred HHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 99999988764334445667899999999999999999887789999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCCcCC----
Q 000680 1269 PAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDS---- 1344 (1354)
Q Consensus 1269 ~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt---- 1344 (1354)
|++|+|+|||+||+++++++||++|++|||||+||+||||+||||+++++|+|||+||++||++|||+++|+||||
T Consensus 1291 p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge 1370 (1622)
T PLN03130 1291 LERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSE 1370 (1622)
T ss_pred CCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccc
Q 000680 1345 SGKLFSAA 1352 (1354)
Q Consensus 1345 ~G~n~s~~ 1352 (1354)
+|.|+|.|
T Consensus 1371 ~G~nLSgG 1378 (1622)
T PLN03130 1371 AGENFSVG 1378 (1622)
T ss_pred CCCCCCHH
Confidence 58899976
No 3
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2e-185 Score=1872.07 Aligned_cols=1309 Identities=29% Similarity=0.481 Sum_probs=1064.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcccc-hhHHHHHHHHHHHHHHHHHHHHHH---HhhhccCCc-ch
Q 000680 23 SFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRIRR-ECVSIVVSACCAVVGIAYLGYCLW---NLIAKNDSS-MS 97 (1354)
Q Consensus 23 ~~c~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~ 97 (1354)
||||++++++|+|++|+|+++|.+++..+++++...+.++ .+.+....++..+.....+++.+. ...-+.... .+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (1495)
T PLN03232 30 TPCAIDSLVMIVSHSVLLGLCFYRIWIILDNAKAQIYVLRKKYYNCVLGILACYCVVEPVLRLVMGISLFDMDEETDLPP 109 (1495)
T ss_pred CccHHhhHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Confidence 8999999999999999999999888744322222233222 223322222222222222222111 110011100 01
Q ss_pred h-HH-HHHHHHHHHHHHHHHH---HHh--ccchhHHHHHHHHHH---HHHHHHHHHHHHHhhcccccccchhhhHHHHHH
Q 000680 98 W-LV-STVRGLIWVSLAISLL---VKR--SKWIRMLITLWWMSF---SLLVLALNIEILARTYTINVVYILPLPVNLLLL 167 (1354)
Q Consensus 98 ~-~~-~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (1354)
. .. .....++|+...+++. .++ .+...+.+++||++. +++............. ....++..+.+.+.+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 188 (1495)
T PLN03232 110 FEVASLMVEAFAWFSMLVLIGLETKQYVKEFRWYVRFGVVYVLVADAVLLDLVLPLKNSINRT-ALYLCISSRCCQALFG 188 (1495)
T ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeehhHhhhhHHHHHHHHHHHHHHhcc-ccceehhHHHHHHHHH
Confidence 1 11 1223344443222211 222 233446678899887 3333222211111110 0122444444443322
Q ss_pred HHH-hhcc-cCCCCCCCC-------CCCCCcccccccCCCCCccCChhHHHHHHhHHHHHHhhcCCCCCCCCCCCCCccC
Q 000680 168 FSA-FRNF-SHFTSPNRE-------DKSLSEPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPED 238 (1354)
Q Consensus 168 ~~~-~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~~p~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~~ 238 (1354)
+.. +... .+.. +... ++..++....+.+++||+++|++||++|||++|++++||+++|+.+|||+|+++|
T Consensus 189 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~f~w~~pl~~~g~~~~L~~~dl~~l~~~~ 267 (1495)
T PLN03232 189 ILLLVYIPELDPY-PGYHILNNESLDNVEYDALRGGENICPERYASIFSRIYFSWMTPLMQLGYRKPITEKDVWQLDQWD 267 (1495)
T ss_pred HHHHHhcccCCCC-CcccccccccccccccccccccCCCCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChhh
Confidence 221 1111 1111 1100 0000111111356789999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHH
Q 000680 239 EASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGL 318 (1354)
Q Consensus 239 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~ 318 (1354)
+++.++++|++.|+++.+ .++++++++++++|++.++..++++++.+++.+++|++++.+++++++++. .+.|+
T Consensus 268 ~~~~~~~~~~~~w~~~~~-----~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~-~~~~~ 341 (1495)
T PLN03232 268 QTETLIKRFQRCWTEESR-----RPKPWLLRALNNSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDP-AWVGY 341 (1495)
T ss_pred hHHHHHHHHHHHHHHhhc-----cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-cchHH
Confidence 999999999999987542 135789999999999999999999999999999999999999999865432 34678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHHHHHH
Q 000680 319 SIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLT 398 (1354)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~~~~~ 398 (1354)
.++++++++.++.+++.++|++...+++.++|..+...+|+|.++++....++.++|+++|+|++|++++.++..++|.+
T Consensus 342 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~~~l~~l 421 (1495)
T PLN03232 342 VYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAEQLHGL 421 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888899999999999999999999999999999988888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHH
Q 000680 399 WSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKF 478 (1354)
Q Consensus 399 w~~plqi~~~~~~L~~~lG~~~l~gl~v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f 478 (1354)
|..|++++++++++|+.+|+++++|++++++++|++..+++++++.+++.++.+|+|.+.++|+++|||+||+|+||+.+
T Consensus 422 ~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~ 501 (1495)
T PLN03232 422 WSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSF 501 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 479 KSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSI 558 (1354)
Q Consensus 479 ~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~ 558 (1354)
.+++++.|++|++..++.....++..+++...|.++++++|++|.+.+ +++|++.+|+++++++.+..|+..+|..+..
T Consensus 502 ~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~v~~-~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~ 580 (1495)
T PLN03232 502 ESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLG-GDLTPARAFTSLSLFAVLRSPLNMLPNLLSQ 580 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998887777777777778888788888887775 7899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCcchhhhccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHH
Q 000680 559 MIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSS 638 (1354)
Q Consensus 559 ~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSt 638 (1354)
+.++++|++||++||..+|...... .+.......|+++|++|+|++++++++|+|+||+|++||+++|+||+||||||
T Consensus 581 ~~~a~~s~~Ri~~~L~~~~~~~~~~--~~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKST 658 (1495)
T PLN03232 581 VVNANVSLQRIEELLLSEERILAQN--PPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTS 658 (1495)
T ss_pred HHHHHHHHHHHHHHHcCcccccccc--CCcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHH
Confidence 9999999999999998765321110 11112234799999999998654568999999999999999999999999999
Q ss_pred HHHHHhCCccCCCcE-EEEcCeEEEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCC
Q 000680 639 LLYAILGEIPKISGT-VNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717 (1354)
Q Consensus 639 Ll~~i~g~~~~~~G~-i~~~g~i~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g 717 (1354)
|+++|+|+++|++|. +.++++||||+|+||++++||||||+||.++++++|++++++|+|.+|++.+|+||+|+|||+|
T Consensus 659 Ll~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G 738 (1495)
T PLN03232 659 LISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERG 738 (1495)
T ss_pred HHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCC
Confidence 999999999999975 5678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEE
Q 000680 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQIT 797 (1354)
Q Consensus 718 ~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~ 797 (1354)
.+|||||||||+||||+|++||||||||||||||++++++++++++.+.+++||+|+|||+++.++.||+|++|++|+|+
T Consensus 739 ~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~ 818 (1495)
T PLN03232 739 VNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIK 818 (1495)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999999988777899999999999999999999999999999
Q ss_pred EecChHHHHhcCchHHHHHHHhhhhcccCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCccccccccccCCcchHH
Q 000680 798 QSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDE 877 (1354)
Q Consensus 798 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 877 (1354)
++|+++|+.++++.+.++.+.+.......+ . .+ +.++..... +...... ..+.....+...+....+.++|
T Consensus 819 ~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~-~-~~---~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e 889 (1495)
T PLN03232 819 EEGTFAELSKSGSLFKKLMENAGKMDATQE-V-NT---NDENILKLG---PTVTIDV-SERNLGSTKQGKRGRSVLVKQE 889 (1495)
T ss_pred EecCHHHHHhcchhHHHHHHhccccccccc-c-cc---ccccccccc---ccccccc-cccccccccccccchhhhhhHH
Confidence 999999999888878777654332110000 0 00 000000000 0000000 0000000000000112345678
Q ss_pred HHhhccccHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCC---CcchHHHHHHHHHHHHHHHHHHH
Q 000680 878 EMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPK---ITSGILIGVYAGVSTASAVFVYF 954 (1354)
Q Consensus 878 ~~~~g~v~~~~y~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~~~---~~~~~~~~iy~~l~~~~~i~~~~ 954 (1354)
+++.|.++|++|++|+++.++.+.+.+++++.+...++..+.++|++.|.+... ....+|+++|++++++..++.++
T Consensus 890 ~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~ 969 (1495)
T PLN03232 890 ERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFT 969 (1495)
T ss_pred HHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 889999999999999998776555555555666667777889999999986431 23467899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000680 955 RSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVT 1034 (1354)
Q Consensus 955 ~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~ 1034 (1354)
+.++....+.++++++|++++++++++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++.++++++++
T Consensus 970 ~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~ 1049 (1495)
T PLN03232 970 NSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVS 1049 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHH
Q 000680 1035 WQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHT 1114 (1354)
Q Consensus 1035 ~~l~l~~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~ 1114 (1354)
+..+++++|+.+++++++.+|.+++|+++|+++.+++|+++|++|+++|+.|||+|+.+++|.+++.+..|.+.+..+..
T Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~ 1129 (1495)
T PLN03232 1050 TISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLAN 1129 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777777887777888899999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000680 1115 NGVMEWLILRVEALQNLTLFTAALFLVLIPRGYV-----APGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQ 1189 (1354)
Q Consensus 1115 ~~~~~wl~~~l~~l~~~~~~~~~~~~vl~~~g~l-----s~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e 1189 (1354)
...++|+..+++.++.++++..+.+.+. ..+.+ .++.+|++++|+..+..++.++++.++++|+.++|+|||.|
T Consensus 1130 ~~~~~wl~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e 1208 (1495)
T PLN03232 1130 TSSNRWLTIRLETLGGVMIWLTATFAVL-RNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGN 1208 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999988776555444433332 23332 25678889999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCC
Q 000680 1190 FMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP 1269 (1354)
Q Consensus 1190 ~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~ 1269 (1354)
|++.|+|++...++..+++.||.+|.|+|+||+|+|+++.++|||||||+|+||||||||||||||||||+++|+|+|||
T Consensus 1209 ~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p 1288 (1495)
T PLN03232 1209 YIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL 1288 (1495)
T ss_pred HhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 99998886543233345668999999999999999998877899999999999999999999999999999999999999
Q ss_pred CCCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCCcCC----C
Q 000680 1270 AGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDS----S 1345 (1354)
Q Consensus 1270 ~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~ 1345 (1354)
++|+|+|||+||+++++++||++|++|||||+||+||||+||||+++++|+|||+||++||++|+|+++|+|||| +
T Consensus 1289 ~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1368 (1495)
T PLN03232 1289 EKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEG 1368 (1495)
T ss_pred CCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred Ccccccc
Q 000680 1346 GKLFSAA 1352 (1354)
Q Consensus 1346 G~n~s~~ 1352 (1354)
|.|+|.|
T Consensus 1369 G~~LSgG 1375 (1495)
T PLN03232 1369 GENFSVG 1375 (1495)
T ss_pred CCCCCHH
Confidence 8899976
No 4
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.2e-184 Score=1866.82 Aligned_cols=1324 Identities=31% Similarity=0.515 Sum_probs=1074.5
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcccchh---HHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 000680 18 EFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRIRREC---VSIVVSACCAVVGIAYLGYCLWNLIAKNDS 94 (1354)
Q Consensus 18 ~~~~~~~c~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (1354)
.||| ||||+++++.|+|+.++++++|+.++...+++ ....++++ .+.....+..++.++.+.+.+|........
T Consensus 20 ~~d~-t~~f~~~~~~~~p~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (1522)
T TIGR00957 20 NPDF-TKCFQNTVLAWVPCFYLWVCFPCYFLYLSRHD--RGYIQMTHLNKTKTALGFLLWIVCWADLFYSFWERSHGRAP 96 (1522)
T ss_pred CCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHhhccC--CCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 3678 99999999999999999999998876332222 12122222 222222222222222233344432111111
Q ss_pred -cchhHHHHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHH-HHHHHHHhhcc---cccccchhhhHHHHHH
Q 000680 95 -SMSWLVSTVRGLIWVSLAISLLVKRS--KWIRMLITLWWMSFSLLVLA-LNIEILARTYT---INVVYILPLPVNLLLL 167 (1354)
Q Consensus 95 -~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 167 (1354)
........+..++|+...+....++. ..++..+..||++..++... .+......... ...+....+...+.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (1522)
T TIGR00957 97 APVFLVSPTLLGITMLLATFLIQLERRKGVQSSGIMLTFWLVALVCALAILRSKILLALKEDAIVDPFRDTTFYIYFALV 176 (1522)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHHHHHHHHHhhcccccccceehhhHHHHHHHH
Confidence 11123334455555433222222222 22345667888877654332 11111111100 0111111112211111
Q ss_pred HHHhhcccCCCCCCCCCCCCCcccccccCCCCCccCChhHHHHHHhHHHHHHhhcCCCCCCCCCCCCCccCcHHHHHHHH
Q 000680 168 FSAFRNFSHFTSPNREDKSLSEPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKF 247 (1354)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~ 247 (1354)
+..+..... .+. ....++...+.+++||++||++||++|||+||++++|||++|+.+|||+++++++++.++++|
T Consensus 177 ~~~~~~~~~--~~~---~~~~~~~~~~~~~~~e~~a~~~s~~~f~W~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~ 251 (1522)
T TIGR00957 177 LSQLVLSCF--SDK---SPLFSETNHDPNPCPESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVL 251 (1522)
T ss_pred HHHHHHHhh--cCC---CCccccccccCCCCCcccCCHHHHHHHHHhHHHHHHHhcCCCChhhccCCCHhHhHHHHHHHH
Confidence 111110000 000 000011011234689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc------------------------------------CCCCCchHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000680 248 AYAWDSLVRENN------------------------------------SNNNGNLVRKVITNVYLKENIFIAICALLRTI 291 (1354)
Q Consensus 248 ~~~w~~~~~~~~------------------------------------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 291 (1354)
++.|+++.++.+ ++.++++++++++++||+.++..++++++.++
T Consensus 252 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~l~~~~~~l~~~~ 331 (1522)
T TIGR00957 252 VENWKKECKKTRKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMSFCFKAIHDL 331 (1522)
T ss_pred HHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccCCccHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 999998642110 01234679999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCC
Q 000680 292 AVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKK 371 (1354)
Q Consensus 292 ~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~~~iy~K~L~ls~~~~~~ 371 (1354)
+.+++|++++.+++|+.++..+.+.||.++++++++.++.+++.++|+|...++|+++|++|.+.||+|+|+++...+++
T Consensus 332 ~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~ 411 (1522)
T TIGR00957 332 MMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKS 411 (1522)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCC
Confidence 99999999999999987654455678999999999999999999999999999999999999999999999999998889
Q ss_pred CCHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 372 HSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIA 451 (1354)
Q Consensus 372 ~~~G~ivNlms~D~~~i~~~~~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~i~~~l~~~~~~~~~~~q~~~~~~ 451 (1354)
.++|+++|+|++|++++.++..++|.+|..|++++++++++|..+|+++++|++++++++|++..+++.++++++++|+.
T Consensus 412 ~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (1522)
T TIGR00957 412 STVGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKS 491 (1522)
T ss_pred CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCC
Q 000680 452 QDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTG-SAPL 530 (1354)
Q Consensus 452 ~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~l~~-~~~L 530 (1354)
+|+|++.++|+|+|||+||+|+||+.|.+++++.|++|++.+++..+...+..+.++..|.++.+++|++|.+.. ++.|
T Consensus 492 ~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l 571 (1522)
T TIGR00957 492 KDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNIL 571 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 999999999999999999999999999999999999999999998888877777778889988888898887764 4689
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhhccc-cCCCCcEEEEeeEEEeCCCCC
Q 000680 531 NASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISL-QKSDRSVKIQEGNFSWDPELA 609 (1354)
Q Consensus 531 t~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~~-~~~~~~i~~~~~~f~~~~~~~ 609 (1354)
+++.+|+++++++.++.|+..+|..+..+.++++|++||++||..+|.++...+.... +.....|+++|++|+|+++ +
T Consensus 572 ~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~ 650 (1522)
T TIGR00957 572 DAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARD-L 650 (1522)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCC-C
Confidence 9999999999999999999999999999999999999999999876654321111111 1122479999999999753 3
Q ss_pred CCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCCCCCCCcHHHHHhcCCCCCHHHH
Q 000680 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARY 689 (1354)
Q Consensus 610 ~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~i~yv~Q~~~~~~~ti~eni~~g~~~~~~~~ 689 (1354)
+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+||||||+||++++||+|||.||.++++++|
T Consensus 651 ~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~ 730 (1522)
T TIGR00957 651 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYY 730 (1522)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHH--Hhc
Q 000680 690 DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM--AAL 767 (1354)
Q Consensus 690 ~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~--~~~ 767 (1354)
++++++|++.+|++.+|+||+|.+|++|.+|||||||||+||||+|++||++||||||||||+++++++++.+.. +..
T Consensus 731 ~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~ 810 (1522)
T TIGR00957 731 QQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVL 810 (1522)
T ss_pred HHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999874 456
Q ss_pred CCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcCchHHHHHHHhhhhcccCCCCCC--CCCCCcccc----c
Q 000680 768 EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDN--AGQGGAEKV----E 841 (1354)
Q Consensus 768 ~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~ 841 (1354)
+++|+|+|||+++.++.||+|++|++|+|++.|+++++.++++.+.++...+....+.....+. ..+..++.. +
T Consensus 811 ~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (1522)
T TIGR00957 811 KNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIE 890 (1522)
T ss_pred cCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHHhhcccccccccccccccccccccccccccc
Confidence 7899999999999999999999999999999999999998777777776543211110000000 000000000 0
Q ss_pred cc-------cCCCCC-----CCCCCCCCCCC-cccc----ccccccCCcchHHHHhhccccHHHHHHHHHhccchhHHHH
Q 000680 842 KG-------RTARPE-----EPNGIYPRKES-SEGE----ISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCL 904 (1354)
Q Consensus 842 ~~-------~~~~~~-----~~~~~~~~~~~-~~~~----~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~l 904 (1354)
.. .....+ ........... +..+ ...+...+..++|+++.|.+++++|+.|+++.+ +..+++
T Consensus 891 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~Y~~~~g-~~~~~~ 969 (1522)
T TIGR00957 891 NGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIG-LFITFL 969 (1522)
T ss_pred ccccccccccchhhhhccccccccccccccccccccccccccccchhhhHHHHHHhcCcccHHHHHHHHHHcC-HHHHHH
Confidence 00 000000 00000000000 0000 000011234567788899999999999999754 444444
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhcCCC-----CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000680 905 GVLAQSGFVGLQAAATYWLAYAIQIPK-----ITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIF 979 (1354)
Q Consensus 905 ~~~~~~~~~~~~~~~~~wl~~~~~~~~-----~~~~~~~~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll 979 (1354)
.+++.++..++..+.++|+++|.+... .....++++|++++++..++.+++.++....+.++++++|++++++++
T Consensus 970 ~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll 1049 (1522)
T TIGR00957 970 SIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKL 1049 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666778889999999986421 123467789999999999999998899999999999999999999999
Q ss_pred cCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 980 KAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATA 1059 (1354)
Q Consensus 980 ~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l~~l~~~~~~~~i~~~y~~~s 1059 (1354)
++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++.++++++.+|+++++++|+++++++++++|.+++
T Consensus 1050 ~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1129 (1522)
T TIGR00957 1050 RSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASS 1129 (1522)
T ss_pred cCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888888888888899999999999
Q ss_pred HHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 1060 RELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF 1139 (1354)
Q Consensus 1060 r~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~ 1139 (1354)
|+++|++.++++|+++|++|+++|+.|||+|+++++|.+++.+..|.+++..+.....++|+..++++++.+++++++.+
T Consensus 1130 r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1209 (1522)
T TIGR00957 1130 RQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALF 1209 (1522)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887655544443
Q ss_pred HHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEE
Q 000680 1140 LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELR 1219 (1354)
Q Consensus 1140 ~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~ 1219 (1354)
.+ ...+.+++|.+|++++|+.++..++.++++.++++|+.++|+||+.+|++.|+|++...++..+++.||.+|.|+|+
T Consensus 1210 ~v-~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~ 1288 (1522)
T TIGR00957 1210 AV-ISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFR 1288 (1522)
T ss_pred HH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEE
Confidence 33 34678999999999999999999999999999999999999999999999888865333344566789999999999
Q ss_pred EEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceeccc
Q 000680 1220 QLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQE 1299 (1354)
Q Consensus 1220 nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQd 1299 (1354)
||+|+|+++.++|||||||+|+||||||||||||||||||+++|+|+|||++|+|+|||+||+++++++||++|++||||
T Consensus 1289 nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQd 1368 (1522)
T TIGR00957 1289 NYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQD 1368 (1522)
T ss_pred EEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCC
Confidence 99999988777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1300 PTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1300 p~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
|+||+||||+||||+++++|||||+||++||++++|+++|+|||| .|.|+|.|
T Consensus 1369 p~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgG 1425 (1522)
T TIGR00957 1369 PVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVG 1425 (1522)
T ss_pred CcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHH
Confidence 999999999999999999999999999999999999999999999 58899976
No 5
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=9.1e-174 Score=1754.46 Aligned_cols=1143 Identities=28% Similarity=0.467 Sum_probs=986.5
Q ss_pred CCCCccCChhHHHHHHhHHHHHHhhcCCCCCCCCCCCCCccCcHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHhh
Q 000680 197 QTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYL 276 (1354)
Q Consensus 197 ~~p~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~ 276 (1354)
.+||++||++||++|||++|++++||+++|+.+|||+|+++++++.+.++|++.|+++.+++ .+.++++++++++|+
T Consensus 3 ~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~---~~~~~L~~~l~~~~~ 79 (1490)
T TIGR01271 3 RSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELASA---KKNPKLLNALRRCFF 79 (1490)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHHhcc---CCCChHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999998764321 245789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 277 KENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEE-NLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMV 355 (1354)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~-~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~~ 355 (1354)
+.++..++++++.+++.+++|++++.+++|++..+. ..+.|+.++++++++.++.+++.++++|...++++++|++|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~ 159 (1490)
T TIGR01271 80 WRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFS 159 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999853322 2456888999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000680 356 AVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNV 435 (1354)
Q Consensus 356 ~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~i~~~l~~ 435 (1354)
+||+|+|+++..+.++.++|+++|+|++|++++.+++.++|.+|.+|+++++++++||.++|+++++|++++++++|++.
T Consensus 160 ~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~ 239 (1490)
T TIGR01271 160 LIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQA 239 (1490)
T ss_pred HHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 436 PFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIIS 515 (1354)
Q Consensus 436 ~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~p~~v~ 515 (1354)
++++.+.++|+++|+.+|+|++.++|+|+|||+||+|+||+.|.+++++.|++|++.+++..+..++..++++..|.+++
T Consensus 240 ~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (1490)
T TIGR01271 240 CLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVV 319 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888787788888999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhhccccCCCCc
Q 000680 516 SVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVR-MIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRS 594 (1354)
Q Consensus 516 ~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~-~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~ 594 (1354)
+++|++|.+.+ .++++.+||++++|++++.|+. .+|..+..+.++.+|++||++||..+|.++.. . ......
T Consensus 320 ~~~f~~y~~~~--~~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~--~---~~~~~~ 392 (1490)
T TIGR01271 320 FLSVVPYALIK--GIILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLE--Y---NLTTTE 392 (1490)
T ss_pred HHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc--c---cCCCCc
Confidence 99999988775 3789999999999999999985 79999999999999999999999887754311 1 112346
Q ss_pred EEEEeeEEEeCCCC-------------------------------CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHH
Q 000680 595 VKIQEGNFSWDPEL-------------------------------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI 643 (1354)
Q Consensus 595 i~~~~~~f~~~~~~-------------------------------~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i 643 (1354)
|+++|++|+|+... .+++|+|+||+|++||+++|+|||||||||||++|
T Consensus 393 i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l 472 (1490)
T TIGR01271 393 VEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMI 472 (1490)
T ss_pred eEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 99999999996310 13689999999999999999999999999999999
Q ss_pred hCCccCCCcEEEEcCeEEEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChH
Q 000680 644 LGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1354)
Q Consensus 644 ~g~~~~~~G~i~~~g~i~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgG 723 (1354)
+|+++|++|+|.++|+||||+|+||++++||+|||+||.++++++|++++++|+|.+|++.+|+||+|++|++|.+||||
T Consensus 473 ~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgG 552 (1490)
T TIGR01271 473 MGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGG 552 (1490)
T ss_pred hCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHH
Confidence 99999999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChH
Q 000680 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQ 803 (1354)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~ 803 (1354)
|||||+||||+|++||+|||||||||||+++++++++.|+....+++|+|+|||+++.++.||+|++|++|+|++.|+++
T Consensus 553 qkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~ 632 (1490)
T TIGR01271 553 QRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFS 632 (1490)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999998877777899999999999999999999999999999999999
Q ss_pred HHHhcCchHHHHHHHhhh--h------------------cccCC-----CCCC-----CCCCC-cc--------------
Q 000680 804 ELLLAGTAFEQLVNAHRD--A------------------ITGLG-----PLDN-----AGQGG-AE-------------- 838 (1354)
Q Consensus 804 ~l~~~~~~~~~~~~~~~~--~------------------~~~~~-----~~~~-----~~~~~-~~-------------- 838 (1354)
++.+.+..+.+....... . ..... +.+. +.... .+
T Consensus 633 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1490)
T TIGR01271 633 ELQAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASA 712 (1490)
T ss_pred HHHhcChHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 998765555544421000 0 00000 0000 00000 00
Q ss_pred ----------------cccccc-CCC-------CC------C-CCCCC------------------CCC-------C-C-
Q 000680 839 ----------------KVEKGR-TAR-------PE------E-PNGIY------------------PRK-------E-S- 860 (1354)
Q Consensus 839 ----------------~~~~~~-~~~-------~~------~-~~~~~------------------~~~-------~-~- 860 (1354)
..+... ... ++ . +.... ... . .
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1490)
T TIGR01271 713 RKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQL 792 (1490)
T ss_pred cccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhccccccccccccccc
Confidence 000000 000 00 0 00000 000 0 0
Q ss_pred -----------------cc--------ccc-----cc-----cccCCcchHHHHhhccccHHHHHHHHHhccchhHHHHH
Q 000680 861 -----------------SE--------GEI-----SV-----KGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLG 905 (1354)
Q Consensus 861 -----------------~~--------~~~-----~~-----~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~l~ 905 (1354)
++ .+. .. +....+.++|+++.|.++|++|++|+++.+++..++++
T Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~ 872 (1490)
T TIGR01271 793 QTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIF 872 (1490)
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCcHHHHHHH
Confidence 00 000 00 00012345677889999999999999977665555555
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhcCC---------CC-------------cchHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 906 VLAQSGFVGLQAAATYWLAYAIQIP---------KI-------------TSGIL-IGVYAGVSTASAVFVYFRSFFAAHL 962 (1354)
Q Consensus 906 ~~~~~~~~~~~~~~~~wl~~~~~~~---------~~-------------~~~~~-~~iy~~l~~~~~i~~~~~~~~~~~~ 962 (1354)
+++.++.+++..+.++|+..|.... +. ...+| +++|+++.++..++.+++.++..+.
T Consensus 873 ~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 952 (1490)
T TIGR01271 873 CLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHT 952 (1490)
T ss_pred HHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667788889999998886411 00 11122 4556666656667788899999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000680 963 GLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAI 1042 (1354)
Q Consensus 963 ~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l~~l 1042 (1354)
+.++++++|.+++++++++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++.++++++.+|+++++++
T Consensus 953 ~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~ 1032 (1490)
T TIGR01271 953 LLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAI 1032 (1490)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 000680 1043 FAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLI 1122 (1354)
Q Consensus 1043 ~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~ 1122 (1354)
|+++++++++++|.+.+|+++|++..+++|+++|+.|+++|+.|||+|+++++|.+++.+..|.+.+.++.....++|+.
T Consensus 1033 ~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~ 1112 (1490)
T TIGR01271 1033 PVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQ 1112 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCC
Q 000680 1123 LRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVE 1202 (1354)
Q Consensus 1123 ~~l~~l~~~~~~~~~~~~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~~~~~ 1202 (1354)
.++++++.+.++.++++.+. ...+++|.+|++++|++.+..++.++++.+.++|+.++|+||+.+|++.|+|++...+
T Consensus 1113 ~~~~~i~~~~~~~~~~l~~~--~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~ 1190 (1490)
T TIGR01271 1113 MRIDIIFVFFFIAVTFIAIG--TNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSG 1190 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence 99998876554443333222 2346788999999999999999999999999999999999999999998887542111
Q ss_pred --------------CCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccC
Q 000680 1203 --------------DKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE 1268 (1354)
Q Consensus 1203 --------------~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e 1268 (1354)
...+|+.||..|.|+|+||+|+|+++.++||+||||+|+||||||||||||||||||+++|+|+++
T Consensus 1191 ~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~ 1270 (1490)
T TIGR01271 1191 GGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS 1270 (1490)
T ss_pred cccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC
Confidence 113456799999999999999999877889999999999999999999999999999999999998
Q ss_pred CCCCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCCcCC----
Q 000680 1269 PAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDS---- 1344 (1354)
Q Consensus 1269 ~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt---- 1344 (1354)
++|+|+|||+||+++++++||++|++|||||+||+||||+||||+++++|+|||+||++|+++++|.++|+||||
T Consensus 1271 -~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e 1349 (1490)
T TIGR01271 1271 -TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVD 1349 (1490)
T ss_pred -CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCcccccccccc
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccc
Q 000680 1345 SGKLFSAA 1352 (1354)
Q Consensus 1345 ~G~n~s~~ 1352 (1354)
+|.|||.|
T Consensus 1350 ~G~nLSgG 1357 (1490)
T TIGR01271 1350 GGYVLSNG 1357 (1490)
T ss_pred CCCcCCHH
Confidence 68899976
No 6
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.6e-165 Score=1673.15 Aligned_cols=1153 Identities=29% Similarity=0.448 Sum_probs=979.8
Q ss_pred CCCCccCChhHHHHHHhHHHHHHhhcCCCCCCCCCCCCCccCcHHHHHHHHHHHHHHHHHhhc-----------------
Q 000680 197 QTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENN----------------- 259 (1354)
Q Consensus 197 ~~p~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~----------------- 259 (1354)
+.||++|||+.++++.|++|.+.++.|..|+.+|||+...+.|+-+...++.+..++...+..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (1560)
T PTZ00243 59 PVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTLDAS 138 (1560)
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeecccc
Confidence 479999999999999999999999999999999999999999997777666655433221100
Q ss_pred -------------------------------C------------------------------------------------
Q 000680 260 -------------------------------S------------------------------------------------ 260 (1354)
Q Consensus 260 -------------------------------~------------------------------------------------ 260 (1354)
+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (1560)
T PTZ00243 139 SRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLSSTG 218 (1560)
T ss_pred ccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeecccc
Confidence 0
Q ss_pred ---------CCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHH
Q 000680 261 ---------NNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVE 331 (1354)
Q Consensus 261 ---------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~ 331 (1354)
+++..+++++++++|++.++..++++++.+++.+++|++++.+++|+++++.....|+.++++++++.+++
T Consensus 219 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~~~~g~~l~~~l~~~~~~~ 298 (1560)
T PTZ00243 219 SVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFLTQLIQ 298 (1560)
T ss_pred cccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHH
Confidence 01112589999999999999999999999999999999999999999765545556888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCC--CCCHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 000680 332 SFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRK--KHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAI 409 (1354)
Q Consensus 332 ~~~~~~~~~~~~~~~~rir~~l~~~iy~K~L~ls~~~~~--~~~~G~ivNlms~D~~~i~~~~~~~~~~w~~plqi~~~~ 409 (1354)
+++.++|+|...+.|+++|++|.+.+|+|+++++..+.. +.++|+++|+|++|++++.+++.++|.+|.+|+++++++
T Consensus 299 ~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li~~~ 378 (1560)
T PTZ00243 299 SVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLLSI 378 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999886654 568999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHH
Q 000680 410 GVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKE 489 (1354)
Q Consensus 410 ~~L~~~lG~~~l~gl~v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~E 489 (1354)
++||.++||++++|++++++++|++.++++.+.++++++|+++|+|++.++|+++|||+||+||||+.|.+++++.|++|
T Consensus 379 ~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~E 458 (1560)
T PTZ00243 379 LLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARE 458 (1560)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 490 FKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRI 569 (1354)
Q Consensus 490 l~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri 569 (1354)
++.+++..+..++..++++.+|.++++++|++|++.+ ++||++++||++++|+.++.|+.++|..++.+.++++|++||
T Consensus 459 l~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g-~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI 537 (1560)
T PTZ00243 459 LRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLG-HELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRI 537 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888889999999999999998886 789999999999999999999999999999999999999999
Q ss_pred HHHhcccCCCcch---h-hh-------c------------------c-----------------------------ccCC
Q 000680 570 NAFLLDHELNNDD---V-RR-------I------------------S-----------------------------LQKS 591 (1354)
Q Consensus 570 ~~fL~~~e~~~~~---~-~~-------~------------------~-----------------------------~~~~ 591 (1354)
++||..+|.+... . +. . + ....
T Consensus 538 ~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1560)
T PTZ00243 538 STFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHP 617 (1560)
T ss_pred HHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccc
Confidence 9999876632100 0 00 0 0 0001
Q ss_pred CCcEEEEeeEEEeCCC-------------------------------------CCCCcceeeeEEeeCCeEEEEECCCCC
Q 000680 592 DRSVKIQEGNFSWDPE-------------------------------------LAIPTLRGVNLDIKWAQKIAVCGSVGA 634 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~-------------------------------------~~~~~l~~i~l~i~~G~~~~ivG~~Gs 634 (1354)
...+.++|++|+|+.. .++++|+|+||+|++||+++|+|||||
T Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGs 697 (1560)
T PTZ00243 618 SPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGS 697 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCC
Confidence 1245667776665310 124589999999999999999999999
Q ss_pred CHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCccccc
Q 000680 635 GKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIG 714 (1354)
Q Consensus 635 GKStLl~~i~g~~~~~~G~i~~~g~i~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig 714 (1354)
||||||++|+|+++|++|+|.++++|||+||+||++++|++|||.|+.++++++|++++++|++++|++.+|+|++|.+|
T Consensus 698 GKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~ 777 (1560)
T PTZ00243 698 GKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIG 777 (1560)
T ss_pred cHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhc
Confidence 99999999999999999999999999999999999999999999999888888999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCC
Q 000680 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGG 794 (1354)
Q Consensus 715 ~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G 794 (1354)
++|.+|||||||||+||||+|++||+||||||||+||++++++++++++.+..+|+|+|+|||+++.++.||+|++|++|
T Consensus 778 ~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G 857 (1560)
T PTZ00243 778 EKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDG 857 (1560)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999998877666799999999999999999999999999
Q ss_pred eEEEecChHHHHhcCchHHHHHHHhhhhcccCCCCCCCCCCCccccccccCCCCCCCCCCCCCC-CCccccccccccCCc
Q 000680 795 QITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRK-ESSEGEISVKGLTQL 873 (1354)
Q Consensus 795 ~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 873 (1354)
+++++|+++++.+.+ .+.++........+..+..........+. .................. ...+.........++
T Consensus 858 ~i~~~G~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 935 (1560)
T PTZ00243 858 RVEFSGSSADFMRTS-LYATLAAELKENKDSKEGDADAEVAEVDA-APGGAVDHEPPVAKQEGNAEGGDGAALDAAAGRL 935 (1560)
T ss_pred EEEEecCHHHHHhCh-HHHHHHHhhcccccccccccccccccccc-cccccccccccccccccccccccccccccccchh
Confidence 999999999998653 45555433211100000000000000000 000000000000000000 000000000111345
Q ss_pred chHHHHhhccccHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHHHhhhcCC-CCcchHHHHHHHHHHHHHHHHH
Q 000680 874 TEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIP-KITSGILIGVYAGVSTASAVFV 952 (1354)
Q Consensus 874 ~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~~-~~~~~~~~~iy~~l~~~~~i~~ 952 (1354)
.++|+++.|.++|++|+.|++..++...+++.+++.+....+..+.++|++.|.+.. ......|+++|+++.++..++.
T Consensus 936 ~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~l~~y~~~~~~~~~~~ 1015 (1560)
T PTZ00243 936 MTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFKLSAATYLYVYLGIVLLGTFSV 1015 (1560)
T ss_pred hhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcccHHHHHHHHHHHHHHHH
Confidence 567788899999999999999876655544444445555667778899999998643 2234567888888887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 953 YFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTF 1032 (1354)
Q Consensus 953 ~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~ 1032 (1354)
+++.+.....+.++++++|++++++++++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++.++++++
T Consensus 1016 ~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~ 1095 (1560)
T PTZ00243 1016 PLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSA 1095 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHH
Q 000680 1033 VTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFF 1112 (1354)
Q Consensus 1033 ~~~~l~l~~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~ 1112 (1354)
.+|.++++++|+.++++++.++|.+..|+++|+++.+++|++++++|+++|+.|||+|+++++|.+++.+..|.+.+..+
T Consensus 1096 ~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~ 1175 (1560)
T PTZ00243 1096 SQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSY 1175 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 99988877888887888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000680 1113 HTNGVMEWLILRVEALQNLTLFTAALFLV---LIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQ 1189 (1354)
Q Consensus 1113 ~~~~~~~wl~~~l~~l~~~~~~~~~~~~v---l~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e 1189 (1354)
.....++|+..++++++.+.+++++++++ ....+.+++|.++++++|+.++..++.++++.++++|+.++|+|||.+
T Consensus 1176 ~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~ 1255 (1560)
T PTZ00243 1176 LENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLY 1255 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988776555444332 223456789999999999999999999999999999999999999999
Q ss_pred hhcC-CCCCCCCC-----------------------CCCCCC---CCCCCcceEEEEEEEEEeCCCCCCccccceEEeeC
Q 000680 1190 FMHI-PPEPPAIV-----------------------EDKRPP---SSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSE 1242 (1354)
Q Consensus 1190 ~~~~-~~E~~~~~-----------------------~~~~~~---~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~ 1242 (1354)
|++. |+|+.... +...++ +.||..|.|+|+||+|+|+++.++|||||||+|+|
T Consensus 1256 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~ 1335 (1560)
T PTZ00243 1256 YTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAP 1335 (1560)
T ss_pred HHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEECC
Confidence 9963 44321100 011122 23567799999999999998877899999999999
Q ss_pred CcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCCCCCCHHHH
Q 000680 1243 GTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEI 1322 (1354)
Q Consensus 1243 GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~~~sDeeI 1322 (1354)
|||||||||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+||||+||||+++++|+||
T Consensus 1336 GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI 1415 (1560)
T PTZ00243 1336 REKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEV 1415 (1560)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1323 WKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1323 ~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
|+||++|+++++|.++|+|||| +|.|+|.|
T Consensus 1416 ~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgG 1449 (1560)
T PTZ00243 1416 WAALELVGLRERVASESEGIDSRVLEGGSNYSVG 1449 (1560)
T ss_pred HHHHHHCCChHHHhhCcccccccccCCcCcCCHH
Confidence 9999999999999999999998 58899976
No 7
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.7e-122 Score=1150.79 Aligned_cols=1064 Identities=21% Similarity=0.255 Sum_probs=783.5
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCC--cch----hHHHHHHHHHHHHHHHHH-HHH
Q 000680 266 LVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSN---RGE--ENL----QEGLSIVGCLIITKVVES-FTQ 335 (1354)
Q Consensus 266 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~---~~~--~~~----~~g~~~~~~l~~~~~~~~-~~~ 335 (1354)
++++....+-+.++++..+..+...+.+..+|++...+.+..+ ... ... ..++.+. .+.+..++.+ +..
T Consensus 14 ~~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~-~lg~~~~~~~~~q~ 92 (1228)
T KOG0055|consen 14 SFFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFV-YLGVGVFISGFIQV 92 (1228)
T ss_pred chHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3444444455778888888888999999999988765443221 111 111 1122222 2222223333 335
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-----HHHHHHHHHHHHHHHHH
Q 000680 336 RHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-----WFHLTWSLALQLFLAIG 410 (1354)
Q Consensus 336 ~~~~~~~~~~~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-----~~~~~w~~plqi~~~~~ 410 (1354)
.+|.+.+.|...|+|..+..++.||...+.+. +++|++++-|+.|+++|.|.+. ++|.+-....-++++++
T Consensus 93 ~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~----~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~ 168 (1228)
T KOG0055|consen 93 SCWMRTGERQTARIRSKYLKAILRQDIGWFDT----NSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFY 168 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccceeec----ccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999874 3459999999999999887543 45555444444555554
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHH-HHHHH
Q 000680 411 VLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIES-RREKE 489 (1354)
Q Consensus 411 ~L~~~lG~~~l~gl~v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~-~R~~E 489 (1354)
..| .+.. +++.+.-++......+++.+.+...+.++...+.-++++|++++||+|-.|+-|+...++-.+ +...+
T Consensus 169 ~~W-~Ltl---v~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~ 244 (1228)
T KOG0055|consen 169 YGW-KLTL---VMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENAL 244 (1228)
T ss_pred HHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHH
Confidence 433 3333 333322223333455678888888888888889999999999999999999999876544433 22222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 490 FKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRI 569 (1354)
Q Consensus 490 l~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri 569 (1354)
--.+++..+......+.+++.-....+..|.+..++..+..+++++|+++...-.-...|.+..+.+..+.+|+++..+|
T Consensus 245 k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I 324 (1228)
T KOG0055|consen 245 KFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRI 324 (1228)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHH
Confidence 11222322222222233333333334455555444444789999999998877777888999999999999999999999
Q ss_pred HHHhcc-cCCCcchhhhccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc
Q 000680 570 NAFLLD-HELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP 648 (1354)
Q Consensus 570 ~~fL~~-~e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~ 648 (1354)
.+-++. ++.++....+.......+.|+++|+.|+||.+++.++|+|+||+|++|+.++||||+||||||++++|.|+++
T Consensus 325 ~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd 404 (1228)
T KOG0055|consen 325 FETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD 404 (1228)
T ss_pred HHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 998864 3333322122233446789999999999999988899999999999999999999999999999999999999
Q ss_pred CCCcEEEEcC-------------eEEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCccccc
Q 000680 649 KISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIG 714 (1354)
Q Consensus 649 ~~~G~i~~~g-------------~i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig 714 (1354)
|++|+|.++| +||.|+|+|.+|++||+|||.||+| ..+++..++++.....+.+..+|+|++|.+|
T Consensus 405 P~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vg 484 (1228)
T KOG0055|consen 405 PTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVG 484 (1228)
T ss_pred CCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhccccc
Confidence 9999999998 5999999999999999999999986 4688899999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCC
Q 000680 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGG 794 (1354)
Q Consensus 715 ~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G 794 (1354)
|+|.+|||||||||||||||.+||+||||||||||||++.++.+ ++.++...+|+|.|+|+|+++.+++||+|++|++|
T Consensus 485 e~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~V-q~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G 563 (1228)
T KOG0055|consen 485 ERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVV-QEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEG 563 (1228)
T ss_pred CCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHH-HHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECC
Confidence 99999999999999999999999999999999999999998764 66778888999999999999999999999999999
Q ss_pred eEEEecChHHHHhcCchHHHHHHHhhhhcccCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCccccccccccCCcc
Q 000680 795 QITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLT 874 (1354)
Q Consensus 795 ~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 (1354)
+|+|.|+|+||++.++.|.++++.++......+.+++++. .+..+....... ......+.. ........+...+..
T Consensus 564 ~IvE~G~h~ELi~~~G~Y~~lv~~Q~~~~~~~~~~~~~~~--~~~~~~s~~~s~-~~~~~~~~~-~~~~~~~~~~~~e~~ 639 (1228)
T KOG0055|consen 564 KIVEQGTHDELIALGGIYSSLVRLQELEKAAEDEEEEESL--KEERSRSLKSSS-SSPSLSRGS-NRSNLLSVKPEGEDP 639 (1228)
T ss_pred EEEEecCHHHHHhccchHHHHHHHHhhhhhhhccccccch--hhhhhhcccccc-ccccccCCc-ccccccccccccccc
Confidence 9999999999999999999999876543321110000000 000000000000 000000000 000000000000000
Q ss_pred hHHHHhhccccHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhHHHHHHhhhc----CC-C---CcchHHHHHHHHHH
Q 000680 875 EDEEMEIGDVGWKPFMDYLNVSK-GMSLLCLGVLAQSGFVGLQAAATYWLAYAIQ----IP-K---ITSGILIGVYAGVS 945 (1354)
Q Consensus 875 ~~e~~~~g~v~~~~y~~y~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~----~~-~---~~~~~~~~iy~~l~ 945 (1354)
++...+.. ....+++.++..+ .|..+++.+++.++..+......+.++...+ .+ + .....+..+|++++
T Consensus 640 ~~~~~~~~--~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~ 717 (1228)
T KOG0055|consen 640 EEPVSEED--EKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLG 717 (1228)
T ss_pred cccccccc--ccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence 00000001 1223455555444 3555556666655555555555555554332 11 1 11234778899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc--cCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHH
Q 000680 946 TASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDS--TPVGRILTRLSSDLSILDFDIPFSIVFVAASGTEL 1023 (1354)
Q Consensus 946 ~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~--~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~ 1023 (1354)
+...++.+++.+++...|.+..+++|..+|+++++.++.|||. +. |+|.+|+++|...+...+...+..+++++..+
T Consensus 718 ~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~ 796 (1228)
T KOG0055|consen 718 IVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAV 796 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999997 45 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHH
Q 000680 1024 LAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKL 1103 (1354)
Q Consensus 1024 i~~i~v~~~~~~~l~l~~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~ 1103 (1354)
+..+++.++.+|+++++++...|++......+.+......+..............|++++++||++|+.|++|.+.|.+.
T Consensus 797 ~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~ 876 (1228)
T KOG0055|consen 797 IIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEE 876 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999887764444444333333333222333333334445678899999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 1104 VDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF----LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLAN 1179 (1354)
Q Consensus 1104 ~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~----~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~ 1179 (1354)
++...+...... .|-++...+-.++..+.-++. .+++.+|.+++..+-..+.-...-...+........++-+
T Consensus 877 l~~p~~~~~~~~---~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~k 953 (1228)
T KOG0055|consen 877 LEKPRKSSFKRG---LISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISK 953 (1228)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHH
Confidence 988777655433 344444444344433333332 3566788888887766555444444556667778889999
Q ss_pred HhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEe--CCCCCCccccceEEeeCCcEEEEECCCCccHH
Q 000680 1180 YIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRY--RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKT 1257 (1354)
Q Consensus 1180 ~~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y--~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKS 1257 (1354)
+..|+.+|+++++.+++-+...+.. ....+.+|+|+|+||+|+| ||+. +||+|+|++|++||+||+||+||||||
T Consensus 954 a~~Aa~~iF~i~dr~~~i~~~~~~~--~~~~~~~G~I~~~~V~F~YPsRP~~-~Il~~l~l~i~~GqTvALVG~SGsGKS 1030 (1228)
T KOG0055|consen 954 AKIAAGSIFEILDRKPTIDPDSTSG--GKLPNVKGDIEFRNVSFAYPTRPDV-PVLNNLSLSIRAGQTVALVGPSGSGKS 1030 (1228)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCCC--CccccceeEEEEeeeEeeCCCCCCc-hhhcCCcEEecCCCEEEEECCCCCCHH
Confidence 9999999999998876432211111 1112468999999999999 4554 499999999999999999999999999
Q ss_pred HHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCC-CCCCHHHHHHHHHHcCCchHHh
Q 000680 1258 TLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKALEKCQLKTTIS 1336 (1354)
Q Consensus 1258 TL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~-~~~sDeeI~~AL~~a~l~~~I~ 1336 (1354)
|++.+|.|||||++|.|.|||+||++++++.||++|++|.|||+||++||||||... .+.|++||.+|++.|++|+||.
T Consensus 1031 TvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~ 1110 (1228)
T KOG0055|consen 1031 TVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFIS 1110 (1228)
T ss_pred HHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHh
Confidence 999999999999999999999999999999999999999999999999999999866 3479999999999999999999
Q ss_pred cCCCCcCCC----Ccccccc
Q 000680 1337 SLPNKLDSS----GKLFSAA 1352 (1354)
Q Consensus 1337 ~Lp~gldt~----G~n~s~~ 1352 (1354)
+||+||||. |.++|-|
T Consensus 1111 sLP~GyDT~vGerG~QLSGG 1130 (1228)
T KOG0055|consen 1111 SLPQGYDTRVGERGVQLSGG 1130 (1228)
T ss_pred cCcCcccCccCcccCcCCch
Confidence 999999993 6666643
No 8
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=9.3e-111 Score=1129.17 Aligned_cols=1069 Identities=17% Similarity=0.158 Sum_probs=734.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 274 VYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSAL 353 (1354)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l 353 (1354)
.+++.+++..++.++..++..+.|+++..+++-+.... .... ++..+++..++..++...+.+...+++.++-..+
T Consensus 57 ~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~-~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l 132 (1466)
T PTZ00265 57 SHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGE-NVND---IIFSLVLIGIFQFILSFISSFCMDVVTTKILKTL 132 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666777777777776442111 1111 1111112222222222222233445555555555
Q ss_pred HHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHH
Q 000680 354 MVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLF---GVVGLGALPGLVLFLI 429 (1354)
Q Consensus 354 ~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~---~~lG~~~l~gl~v~~i 429 (1354)
...+|++.++++..-.+....|++.|.++.|++.+.+.+. .+..+...++.++.++++++ |.+.+.+++.+++
T Consensus 133 R~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl--- 209 (1466)
T PTZ00265 133 KLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPL--- 209 (1466)
T ss_pred HHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---
Confidence 5666777777665444556789999999999999887543 34444455555555555544 3344433333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 000680 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGT-VIYW 508 (1354)
Q Consensus 430 ~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~-~~~~ 508 (1354)
++.+...+.+++++..++..+..++..+.+.|.++|||+||.|+-|+.+.++..+..+...+...+.....++.. +...
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~ 289 (1466)
T PTZ00265 210 IYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMING 289 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233345567777778888888889999999999999999999999998888776544443333233322222221 1111
Q ss_pred HHHHHHHHHHH-HHHHHhCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Q 000680 509 MSPTIISSVIF-LGCALTGS-------APLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNN 580 (1354)
Q Consensus 509 ~~p~~v~~~~f-~~~~l~~~-------~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~ 580 (1354)
+.-....++.+ +++.+..+ +.++++.+++.+........++..+...+..+.++.+|.+||.+.++.++..+
T Consensus 290 ~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~ 369 (1466)
T PTZ00265 290 FILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVE 369 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 11111222223 33333332 35788888776655444445556666678899999999999999997643211
Q ss_pred chhhhccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEc-C-
Q 000680 581 DDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY-G- 658 (1354)
Q Consensus 581 ~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~-g- 658 (1354)
...+....+ ....|+++|++|+|+.+++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |
T Consensus 370 ~~~~~~~~~-~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~ 448 (1466)
T PTZ00265 370 NNDDGKKLK-DIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSH 448 (1466)
T ss_pred CCCCCccCC-CCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCc
Confidence 111111111 1237999999999986544579999999999999999999999999999999999999999999994 3
Q ss_pred ------------eEEEEeCCCCCCCCcHHHHHhcCCC-------------------------------------------
Q 000680 659 ------------SIAYVSQTSWIQSGSIRDNILYGKP------------------------------------------- 683 (1354)
Q Consensus 659 ------------~i~yv~Q~~~~~~~ti~eni~~g~~------------------------------------------- 683 (1354)
+||||+|+|.++++||+|||.+|..
T Consensus 449 ~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1466)
T PTZ00265 449 NLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNT 528 (1466)
T ss_pred chhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccc
Confidence 3899999999999999999999741
Q ss_pred ---------------CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 000680 684 ---------------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFS 748 (1354)
Q Consensus 684 ---------------~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s 748 (1354)
.++++..++++.+++++.++.+|+|.+|.+|++|.+|||||||||+||||++++|+|+|||||||
T Consensus 529 ~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTS 608 (1466)
T PTZ00265 529 TDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATS 608 (1466)
T ss_pred cchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 23356778888899999999999999999999999999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhhcCEEEEEeCC---------------------------------
Q 000680 749 AVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGG--------------------------------- 794 (1354)
Q Consensus 749 ~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G--------------------------------- 794 (1354)
+||+++++.+.+.+.+... +|+|+|+|||+++.+..||+|++|++|
T Consensus 609 aLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1466)
T PTZ00265 609 SLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNN 688 (1466)
T ss_pred ccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccccccccccccccccccc
Confidence 9999999998776554433 589999999999999889999999986
Q ss_pred --------------eEEEecChHHHHh-cCchHHHHHHHhhhhcccCC-C-CCCCCCCCcccccccc-CCCCCCCCC---
Q 000680 795 --------------QITQSGNYQELLL-AGTAFEQLVNAHRDAITGLG-P-LDNAGQGGAEKVEKGR-TARPEEPNG--- 853 (1354)
Q Consensus 795 --------------~i~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~-~~~~~~~~~--- 853 (1354)
+|+|+|+++|+++ .++.|..+++.+........ . .+.............. ....++...
T Consensus 689 ~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (1466)
T PTZ00265 689 NNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPDEMNGNSK 768 (1466)
T ss_pred cccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhcccccccccccccccccccccccccccccccccccccccc
Confidence 5999999999998 57888888865432211100 0 0000000000000000 000000000
Q ss_pred --CCC-C--CCCcc--cc-ccccccCCcchHHHH----hhccccHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHH
Q 000680 854 --IYP-R--KESSE--GE-ISVKGLTQLTEDEEM----EIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATY 921 (1354)
Q Consensus 854 --~~~-~--~~~~~--~~-~~~~~~~~~~~~e~~----~~g~v~~~~y~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 921 (1354)
... . ..... .+ .+.....+....++. ......+..+++++...... +++.+++.++..++..+.++
T Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 846 (1466)
T PTZ00265 769 HENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKD--VTIIALSILVAGGLYPVFAL 846 (1466)
T ss_pred ccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 000 0 00000 00 000000000000000 00011223334444332222 22222233333444555555
Q ss_pred HHHhhhcC----CC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc--cCcch
Q 000680 922 WLAYAIQI----PK--ITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDS--TPVGR 993 (1354)
Q Consensus 922 wl~~~~~~----~~--~~~~~~~~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~--~p~G~ 993 (1354)
.++.+++. .. .....+.+++++++++..++.+++.++..+.+.+...++|.+++++++++|++|||+ +++|+
T Consensus 847 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~ 926 (1466)
T PTZ00265 847 LYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGL 926 (1466)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHH
Confidence 55554431 10 012245566667777888888999999999999999999999999999999999996 88999
Q ss_pred HHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH------
Q 000680 994 ILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIA--TARELIRI------ 1065 (1354)
Q Consensus 994 IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l~~l~~~~~~~~i~~~y~~--~sr~l~rl------ 1065 (1354)
+++|+++|++.+...+...+..++..++.+++.++++++.+|.++++++|++++.........+ ..++.++.
T Consensus 927 l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1466)
T PTZ00265 927 LSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKDVEKKEINQPG 1006 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 9999999999999999988999999999999999999999999887766554433222211111 11111111
Q ss_pred -------HhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000680 1066 -------NGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFT-AA 1137 (1354)
Q Consensus 1066 -------~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~-~~ 1137 (1354)
+.+..+...+.++|+++|++|||+|+.|+++.+++.+..+...+..........++....+.+..+..++ ..
T Consensus 1007 ~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1086 (1466)
T PTZ00265 1007 TVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYW 1086 (1466)
T ss_pred cccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222455678999999999999999999999999999998877766655554444444444443332222 23
Q ss_pred HHHHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCC-CCCCCCcceE
Q 000680 1138 LFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRP-PSSWPFKGRI 1216 (1354)
Q Consensus 1138 ~~~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~~~~~~~~~-~~~wp~~G~I 1216 (1354)
+.+.++..|.++.|.+..++.+.+....++..+...+.+++.+..|.+|+.++++.+++.+...+...+ +...+..|.|
T Consensus 1087 ~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I 1166 (1466)
T PTZ00265 1087 FGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKI 1166 (1466)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceE
Confidence 334556789999998888776655555567778889999999999999999999876543211111111 0112346899
Q ss_pred EEEEEEEEeCCC-CCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCC--------------------------
Q 000680 1217 ELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-------------------------- 1269 (1354)
Q Consensus 1217 ~f~nVsf~Y~~~-~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~-------------------------- 1269 (1354)
+|+||+|+|++. ..+||+|+||+|+|||+|||||+||||||||+++|.|||+|
T Consensus 1167 ~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~ 1246 (1466)
T PTZ00265 1167 EIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDE 1246 (1466)
T ss_pred EEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccc
Confidence 999999999632 23699999999999999999999999999999999999999
Q ss_pred ----------------------------CCCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCCC-CCCHH
Q 000680 1270 ----------------------------AGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDD 1320 (1354)
Q Consensus 1270 ----------------------------~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~-~~sDe 1320 (1354)
++|+|+|||+||+++++++||++|++|||||+||+|||||||.... +++||
T Consensus 1247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~e 1326 (1466)
T PTZ00265 1247 EQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATRE 1326 (1466)
T ss_pred ccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHH
Confidence 6999999999999999999999999999999999999999997653 58999
Q ss_pred HHHHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1321 EIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1321 eI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
||++|++.|+++|||.+||+|||| .|.++|-|
T Consensus 1327 eI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGG 1362 (1466)
T PTZ00265 1327 DVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGG 1362 (1466)
T ss_pred HHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHH
Confidence 999999999999999999999999 47788754
No 9
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.6e-69 Score=683.84 Aligned_cols=542 Identities=21% Similarity=0.256 Sum_probs=420.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 269 KVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMR 348 (1354)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r 348 (1354)
+...+.+++.+++..++.++..++..+.|+++..+++....+..+....+.+++++++..++..++.....+...+.+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (588)
T PRK11174 14 KQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKAGQH 93 (588)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678888888888999999999999999999886431111112222333344445555566555555667788999
Q ss_pred HHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHH
Q 000680 349 MRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLF---GVVGLGALPGL 424 (1354)
Q Consensus 349 ir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~---~~lG~~~l~gl 424 (1354)
+...+...+|+|.++++....++.++|+++|.++.|++++.++.. .+..++...+.+++++++++ +.+++.+++.+
T Consensus 94 ~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~ 173 (588)
T PRK11174 94 IRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLGTA 173 (588)
T ss_pred HHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998777788999999999999999998653 45555655555555554443 33343333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 000680 425 VLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLI----ESRREKEFKWLSEAQLRK 500 (1354)
Q Consensus 425 ~v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i----~~~R~~El~~l~~~~~~~ 500 (1354)
+ +...+...+.++.++.+++.++..++..+.+.|.++|+++||.|+||+.+.++. ++.|+.+.+..+......
T Consensus 174 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (588)
T PRK11174 174 P---LIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSS 250 (588)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 222233456778888888999999999999999999999999999999876655 556666655544433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000680 501 AYGTVIYWMSPTIISSVIFLGCALTGS-------APLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFL 573 (1354)
Q Consensus 501 ~~~~~~~~~~p~~v~~~~f~~~~l~~~-------~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL 573 (1354)
.+..++..+ +. +.++.++++.+.+. ..+++..+|.++.+...+..|+..++..+..+.++++|.+||.+++
T Consensus 251 ~~~~~~~~~-~~-~~~~~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l 328 (588)
T PRK11174 251 AVLEFFASI-SI-ALVAVYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFL 328 (588)
T ss_pred HHHHHHHHH-HH-HHHHHHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222222 11 12223334433331 1234445566666777788999999999999999999999999999
Q ss_pred cccCCCcchhhhccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcE
Q 000680 574 LDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653 (1354)
Q Consensus 574 ~~~e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~ 653 (1354)
+.++.++.......+....+.|+++|++|.|+++ +++|+|+||+|++||.++|+||+|||||||+++|+|++ |++|+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~--~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~ 405 (588)
T PRK11174 329 ETPLAHPQQGEKELASNDPVTIEAEDLEILSPDG--KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGS 405 (588)
T ss_pred cCCCcccCCCccccCCCCCceEEEEeeEEeccCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcE
Confidence 7665322111100111123469999999877643 57999999999999999999999999999999999999 99999
Q ss_pred EEEcC-------------eEEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCC
Q 000680 654 VNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1354)
Q Consensus 654 i~~~g-------------~i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~ 719 (1354)
|.++| +|+||||+|++|++||+|||.+|.+ .+++++.++++.|+++++++.+|+|++|.|||+|.+
T Consensus 406 I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~ 485 (588)
T PRK11174 406 LKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAG 485 (588)
T ss_pred EEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCC
Confidence 99998 5999999999999999999999965 889999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEe
Q 000680 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1354)
Q Consensus 720 LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1354)
||||||||++||||+++||+|+||||||||||++++++|.+. +....+++|+|+|||+++.++.||+|++|++|+|+++
T Consensus 486 LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~-l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~ 564 (588)
T PRK11174 486 LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQA-LNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQ 564 (588)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH-HHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeec
Confidence 999999999999999999999999999999999999999864 4555678999999999999999999999999999999
Q ss_pred cChHHHHhcCchHHHHHHHh
Q 000680 800 GNYQELLLAGTAFEQLVNAH 819 (1354)
Q Consensus 800 g~~~~l~~~~~~~~~~~~~~ 819 (1354)
|+++|++++++.|.++...+
T Consensus 565 G~~~eL~~~~~~y~~l~~~q 584 (588)
T PRK11174 565 GDYAELSQAGGLFATLLAHR 584 (588)
T ss_pred CCHHHHHhcchHHHHHHHHh
Confidence 99999999888888877543
No 10
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-68 Score=635.58 Aligned_cols=537 Identities=20% Similarity=0.301 Sum_probs=425.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc---chhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEE---NLQE-GLSIVGCLIITKVVESFTQRHCFFGSRRS 345 (1354)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~---~~~~-g~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 345 (1354)
.+.+..|+.+..+.++.++.......-|.++..+++-+...+. .... ...+.++.++..+...+-..++.+...|+
T Consensus 140 ~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv 219 (716)
T KOG0058|consen 140 GLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGERV 219 (716)
T ss_pred HHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777788888888888899999999998886654111 1122 23333333444444444456677788889
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHH
Q 000680 346 GMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGE-FPFWFHLTWSLALQLFLAIGVLF---GVVGLGAL 421 (1354)
Q Consensus 346 ~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~-~~~~~~~~w~~plqi~~~~~~L~---~~lG~~~l 421 (1354)
..|+|..+...+.++.....+. +.+||+++.++.|++.+.+ +..++....-..+|.+.++.+++ |.+....+
T Consensus 220 ~~rlR~~lF~sil~QdiaFFD~----nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~ 295 (716)
T KOG0058|consen 220 VARLRTDLFRSLLRQDIAFFDE----NKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTL 295 (716)
T ss_pred HHHHHHHHHHHHHhhhhhhhcc----CCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 9999999988888888888764 5699999999999999988 45577777777788888877765 44544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHH----HHHHHHHHHHHHHHHHHHHH
Q 000680 422 PGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEK----FKSLIESRREKEFKWLSEAQ 497 (1354)
Q Consensus 422 ~gl~v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~----f~~~i~~~R~~El~~l~~~~ 497 (1354)
+.+++++ .+..++++++++..++..++..+-.+..+|.|++||+|+.|+-|+. |.+++++.++-- +|..
T Consensus 296 i~~P~v~---~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~----~k~a 368 (716)
T KOG0058|consen 296 IVVPIVA---LVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLS----KKEA 368 (716)
T ss_pred HHhcHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHH----HHHH
Confidence 4333322 2345567778888888888888889999999999999999999974 444444443332 1211
Q ss_pred HHHHHHHHHH-HH-HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000680 498 LRKAYGTVIY-WM-SPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLD 575 (1354)
Q Consensus 498 ~~~~~~~~~~-~~-~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~ 575 (1354)
+..++....+ .+ .-..++...++++ ++..+.+|++...+.+..-..+..++..+....+.++++..+.+|+.+|++.
T Consensus 369 ~a~~~f~~~~~~~~~~~~~siL~~Gg~-Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr 447 (716)
T KOG0058|consen 369 VAYGIFFGSTNLLGNLAVLSILFYGGH-LVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDR 447 (716)
T ss_pred HHhhHhHhHHHHHHhHHHHHHHHhccc-hhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhcc
Confidence 1111111000 01 1122333333444 4444889999988888888888999999999999999999999999999976
Q ss_pred cCCCcchhhhccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEE
Q 000680 576 HELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655 (1354)
Q Consensus 576 ~e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~ 655 (1354)
+..-+.+ ....+....+.|+|+|++|+|+.+++.++|+|+||+|+|||.||+|||+|+||||+.++|+.+|+|++|+|.
T Consensus 448 ~P~i~~~-G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Il 526 (716)
T KOG0058|consen 448 KPRIPLT-GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRIL 526 (716)
T ss_pred CCCCCCC-CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE
Confidence 4432222 111122467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcC-------------eEEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCC
Q 000680 656 LYG-------------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1354)
Q Consensus 656 ~~g-------------~i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LS 721 (1354)
++| +||+|.|+|.+|++||+|||.+|.+ .+++++.++.+.+..++.+..+|+|++|.+||+|..||
T Consensus 527 lDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLS 606 (716)
T KOG0058|consen 527 LDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLS 606 (716)
T ss_pred ECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCcccccc
Confidence 998 5999999999999999999999976 56788999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecC
Q 000680 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1354)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 801 (1354)
|||||||||||||++||.||||||.|||||++.+..+ ++.+....+++|||+++|+++.+++||+|+|+++|+++|.|+
T Consensus 607 GGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lV-q~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~ 685 (716)
T KOG0058|consen 607 GGQKQRIAIARALLRNPRVLILDEATSALDAESEYLV-QEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGT 685 (716)
T ss_pred chHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHH-HHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEeccc
Confidence 9999999999999999999999999999999997754 667777788899999999999999999999999999999999
Q ss_pred hHHHHhcC-chHHHHHHHhh
Q 000680 802 YQELLLAG-TAFEQLVNAHR 820 (1354)
Q Consensus 802 ~~~l~~~~-~~~~~~~~~~~ 820 (1354)
|+|+++.. +.|.++++.+.
T Consensus 686 h~eLl~~~~gly~~Lv~~q~ 705 (716)
T KOG0058|consen 686 HDELLSKPNGLYAKLVQRQL 705 (716)
T ss_pred HHHHhhCcccHHHHHHHHhc
Confidence 99999987 68888886653
No 11
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=3.3e-65 Score=636.02 Aligned_cols=545 Identities=23% Similarity=0.333 Sum_probs=438.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 267 VRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSG 346 (1354)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 346 (1354)
.++..++-+++.+.-..+..++..+++++.|++.+.+++.+-.. .....-+.++.++.+..+++.++...-.+...+++
T Consensus 144 ~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~-~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~ 222 (709)
T COG2274 144 WFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPD-ASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLG 222 (709)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556777777777888888999999999999999865322 22233344555555556666655433345567889
Q ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHH
Q 000680 347 MRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLA---IGVLFGVVGLGALPG 423 (1354)
Q Consensus 347 ~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~~~~~w~~plqi~~~---~~~L~~~lG~~~l~g 423 (1354)
.|+...+...+|++.|+++..-..+.++|++++.+ .|.++|.++... ...+.++.+..+ +++++..-++-+++.
T Consensus 223 ~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~-~el~~Ir~flt~--~~l~~iiD~~~~~i~l~vm~~ys~~L~li~ 299 (709)
T COG2274 223 KRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRV-RELEQIREFLTG--SILTLIIDLLFALIFLAVMFLYSWKLTLIV 299 (709)
T ss_pred HHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888889999999997 588888887552 223334433333 333444444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 424 LVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYG 503 (1354)
Q Consensus 424 l~v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~ 503 (1354)
++.+.+.+.+..++.+.+++..++.++...++-+...|.++||++||..+-|+.+..+.++.-.+..+.-.+........
T Consensus 300 l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 379 (709)
T COG2274 300 LAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALIL 379 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 55555555566777888899999999999999999999999999999999999999888877766665444433333222
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcch
Q 000680 504 TVIYWMSPTII-SSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDD 582 (1354)
Q Consensus 504 ~~~~~~~p~~v-~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~ 582 (1354)
.......+.+. .++.+++..++-++.+|.+..+..-++......|+..+.+....+.+++++.+|+.+.++.+..++.+
T Consensus 380 ~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~ 459 (709)
T COG2274 380 NTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGD 459 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 22222222222 23344555555558999999999999999999999999999999999999999999999876543222
Q ss_pred hhhccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----
Q 000680 583 VRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---- 658 (1354)
Q Consensus 583 ~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---- 658 (1354)
......++.++.|+++|++|+|++++ +++|+|+|++|++||.+||+|+||||||||+|+|+|+++|++|+|.++|
T Consensus 460 ~~~~~~~~~~g~I~~~nvsf~y~~~~-~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~ 538 (709)
T COG2274 460 KTLIHLPKLQGEIEFENVSFRYGPDD-PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLN 538 (709)
T ss_pred cccccccccCceEEEEEEEEEeCCCC-cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHH
Confidence 11223455678999999999999764 4799999999999999999999999999999999999999999999998
Q ss_pred ---------eEEEEeCCCCCCCCcHHHHHhcCCCCC-HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 000680 659 ---------SIAYVSQTSWIQSGSIRDNILYGKPMD-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1354)
Q Consensus 659 ---------~i~yv~Q~~~~~~~ti~eni~~g~~~~-~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1354)
+|+||+|++.+|++||+|||.++.|.. .++..++++..+.++++..+|.|++|.+||+|.+||||||||+
T Consensus 539 ~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrl 618 (709)
T COG2274 539 DIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRL 618 (709)
T ss_pred hcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHH
Confidence 599999999999999999999998854 4788888899999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhc
Q 000680 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 729 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
+||||++++|+|++|||||||||+++++.+.+.+. ...+|+|+|+|||+++.+++||+|+||++|+|+++|+++|+++.
T Consensus 619 alARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~-~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 619 ALARALLSKPKILLLDEATSALDPETEAIILQNLL-QILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred HHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHH-HHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh
Confidence 99999999999999999999999999999988764 44567999999999999999999999999999999999999999
Q ss_pred CchHHHHHH
Q 000680 809 GTAFEQLVN 817 (1354)
Q Consensus 809 ~~~~~~~~~ 817 (1354)
++.+.++..
T Consensus 698 ~g~y~~l~~ 706 (709)
T COG2274 698 GGLYARLYQ 706 (709)
T ss_pred cChHHHHHh
Confidence 888887764
No 12
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=4.9e-65 Score=654.51 Aligned_cols=542 Identities=23% Similarity=0.274 Sum_probs=422.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 267 VRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSG 346 (1354)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 346 (1354)
+++..++.+++.++...++.++..++..+.|+++..+++.+-... ....-+.+++++++..++..++.....+...+++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (686)
T TIGR03797 126 LLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDA-DRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLE 204 (686)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566777888888888899999999999999888653221 1122223333444444445555444455677889
Q ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000680 347 MRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW--FHLTWSLALQLFLAIGVLFGVVGLGALPGL 424 (1354)
Q Consensus 347 ~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~--~~~~w~~plqi~~~~~~L~~~lG~~~l~gl 424 (1354)
.++...+...+|+|.++++.....+.++|+++|.++ |++.+.++... +..+...++ +++++++++..-++.+++.+
T Consensus 205 ~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li~l 282 (686)
T TIGR03797 205 TRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIF-ALLNLGLMFYYSWKLALVAV 282 (686)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999876566788999999997 88888875432 233333333 33444444444344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 425 VLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGT 504 (1354)
Q Consensus 425 ~v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~ 504 (1354)
+++.+...+...+.+..++..++.++..+++.+...|.++|+++||.++.|+.+.++.++.-++..+...+.........
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (686)
T TIGR03797 283 ALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLT 362 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444556678888888999999999999999999999999999999998877776655544433333322222222
Q ss_pred HHHHHHHHH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchh
Q 000680 505 VIYWMSPTI-ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV 583 (1354)
Q Consensus 505 ~~~~~~p~~-v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~ 583 (1354)
.+......+ ..++.+.+..++.++.+|.+.+++...++..+..|+..++..+..+.+++++++|+.+++..++..+..
T Consensus 363 ~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~- 441 (686)
T TIGR03797 363 VFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA- 441 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC-
Confidence 211111111 222223333334447899999999999999999999999999999999999999999999765422111
Q ss_pred hhccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----
Q 000680 584 RRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----- 658 (1354)
Q Consensus 584 ~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g----- 658 (1354)
...+....+.|+++|++|+|+++ ++++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 442 -~~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~ 519 (686)
T TIGR03797 442 -KTDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAG 519 (686)
T ss_pred -cCCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCc
Confidence 11111234579999999999754 36799999999999999999999999999999999999999999999988
Q ss_pred --------eEEEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 659 --------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 659 --------~i~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
+||||||+|+++++||+|||.++.+.+++++.++++.++++++++.+|+|.+|.+|++|.+||||||||++|
T Consensus 520 ~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRial 599 (686)
T TIGR03797 520 LDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLI 599 (686)
T ss_pred CCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHH
Confidence 499999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcCc
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGT 810 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1354)
|||++++|++++||||||+||+++++++.+.+... ++|+|+|||+++.++.||+|++|++|+|++.|+++|++++++
T Consensus 600 ARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~ 676 (686)
T TIGR03797 600 ARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREG 676 (686)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCCc
Confidence 99999999999999999999999999998876442 589999999999999999999999999999999999999888
Q ss_pred hHHHHHH
Q 000680 811 AFEQLVN 817 (1354)
Q Consensus 811 ~~~~~~~ 817 (1354)
.|.++.+
T Consensus 677 ~y~~l~~ 683 (686)
T TIGR03797 677 LFAQLAR 683 (686)
T ss_pred HHHHHHH
Confidence 8887764
No 13
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=3.6e-65 Score=658.75 Aligned_cols=540 Identities=19% Similarity=0.231 Sum_probs=425.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1354)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ri 349 (1354)
..++.+++.++...+..++..++..+.|+++..+++..-... .....+.++.++++..++..++.....+...+++.++
T Consensus 147 ~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (710)
T TIGR03796 147 RRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQG-RQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKL 225 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777778888888899999999999888543221 1112233333444444555555544556677889999
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000680 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1354)
Q Consensus 350 r~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~ 428 (1354)
...+...+|+|.++++....++.++|+++|.++.| +.+.++.. .+..+....+.+++.+++++..-++-+++.++.+.
T Consensus 226 ~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~ 304 (710)
T TIGR03796 226 AVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAA 304 (710)
T ss_pred HHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987666778999999999988 67777543 33334444444555555555443344444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYW 508 (1354)
Q Consensus 429 i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~ 508 (1354)
+.+.+...+.+...+..++.++..+++.+.+.|.++|+++||.+++|+.+.++.++.++++.+...+..........+..
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (710)
T TIGR03796 305 INVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPT 384 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566778888888888999999999999999999999999999999999988888777655554433332222111
Q ss_pred HHH-HHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchh---
Q 000680 509 MSP-TII-SSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV--- 583 (1354)
Q Consensus 509 ~~p-~~v-~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~--- 583 (1354)
... ... .++.++++... ++.+|.+.+++.+.++..+..|+..++..+..+.+++++++|+.++++.++..+...
T Consensus 385 ~i~~~~~~~il~~g~~~v~-~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~ 463 (710)
T TIGR03796 385 LLTSLNSALILVVGGLRVM-EGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEA 463 (710)
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccc
Confidence 111 111 12223333333 478999999999999999999999999999999999999999999997654321111
Q ss_pred -h-hccc-cCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--
Q 000680 584 -R-RISL-QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-- 658 (1354)
Q Consensus 584 -~-~~~~-~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-- 658 (1354)
. .... +...+.|+++|++|+|+++ ++++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 464 ~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~ 542 (710)
T TIGR03796 464 PAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIP 542 (710)
T ss_pred cccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEe
Confidence 0 0111 2234679999999999864 35799999999999999999999999999999999999999999999987
Q ss_pred -----------eEEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHH
Q 000680 659 -----------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1354)
Q Consensus 659 -----------~i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkq 726 (1354)
+|+||||+|+++++||+|||.++.+ .+++++.++++.++++++++.+|+|.+|.+||+|.+|||||||
T Consensus 543 i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQ 622 (710)
T TIGR03796 543 REEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQ 622 (710)
T ss_pred HHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHH
Confidence 5999999999999999999998764 7889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHH
Q 000680 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806 (1354)
Q Consensus 727 Rv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 806 (1354)
|++||||++++|++++||||||+||+++++++++.+.. +++|+|+|||+++.++.||+|++|++|+|++.|+++|++
T Consensus 623 RiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll 699 (710)
T TIGR03796 623 RLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELW 699 (710)
T ss_pred HHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 99999999999999999999999999999999887653 589999999999999999999999999999999999999
Q ss_pred hcCchHHHHH
Q 000680 807 LAGTAFEQLV 816 (1354)
Q Consensus 807 ~~~~~~~~~~ 816 (1354)
++++.|.++.
T Consensus 700 ~~~~~y~~l~ 709 (710)
T TIGR03796 700 AVGGAYARLI 709 (710)
T ss_pred HcCCcHHHHh
Confidence 8887777654
No 14
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=6.5e-65 Score=652.66 Aligned_cols=535 Identities=21% Similarity=0.259 Sum_probs=399.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc--chhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 000680 272 TNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEE--NLQEGLSIVGCLII-TKVVESFTQRHCFFGSRRSGMR 348 (1354)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~--~~~~g~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~r 348 (1354)
.+.+++.++...++.++..++..+.|++...+++.+..... .......+.+++.+ ..++..+....+.+...++..+
T Consensus 156 ~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 235 (711)
T TIGR00958 156 SGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLR 235 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777778888889999999999999987643221 11111111111111 1222222222233334444444
Q ss_pred HHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000680 349 MRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFP-FWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLF 427 (1354)
Q Consensus 349 ir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~-~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~ 427 (1354)
+ ...+|+|.++.+...-++.++|+++|.++.|++.+.+.. ..+..+....+++++++++++..-++.+++.++.+
T Consensus 236 l----r~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~ 311 (711)
T TIGR00958 236 I----REDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINL 311 (711)
T ss_pred H----HHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4 456677777776554456789999999999999998754 35566666666676666655543222223222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIY 507 (1354)
Q Consensus 428 ~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~ 507 (1354)
.+...+...+.+..++..++.++..++..+...|.++|+++||.|++|+.+.++.++..++-.+..++.....+....+.
T Consensus 312 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (711)
T TIGR00958 312 PLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTT 391 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333445567777788888888899999999999999999999999998666555444332222222211111111111
Q ss_pred HHHH--HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhh
Q 000680 508 WMSP--TIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRR 585 (1354)
Q Consensus 508 ~~~p--~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~ 585 (1354)
.... ..+..+.++++... ++.+|.+.+++.+.++..+..|+..++..+..+.+++++.+|+.++++.++..++.. .
T Consensus 392 ~~~~~~~~~~il~~g~~lv~-~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~-~ 469 (711)
T TIGR00958 392 SVLGMLIQVLVLYYGGQLVL-TGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTG-T 469 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC-C
Confidence 1111 11122223333333 478999999999999999999999999999999999999999999997654322111 1
Q ss_pred ccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------
Q 000680 586 ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------- 658 (1354)
Q Consensus 586 ~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------- 658 (1354)
..+.+..+.|+++|++|+|++++++++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 470 ~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~ 549 (711)
T TIGR00958 470 LAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYD 549 (711)
T ss_pred CCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcC
Confidence 1112234579999999999865456899999999999999999999999999999999999999999999988
Q ss_pred ------eEEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000680 659 ------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1354)
Q Consensus 659 ------~i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1354)
+|+||||+|+++++||||||.+|.+ .+++++.++++.++++++++.+|+|.+|.+|++|.+||||||||++||
T Consensus 550 ~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalA 629 (711)
T TIGR00958 550 HHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIA 629 (711)
T ss_pred HHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHH
Confidence 5999999999999999999999965 678899999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcCch
Q 000680 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTA 811 (1354)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 811 (1354)
||++++|+|++||||||+||+++++.+.+ ....+++|+|+|||+++.++.+|+|++|++|+|+++|+++|++++++.
T Consensus 630 RALl~~p~ILILDEpTSaLD~~te~~i~~---~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~ 706 (711)
T TIGR00958 630 RALVRKPRVLILDEATSALDAECEQLLQE---SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGC 706 (711)
T ss_pred HHHhcCCCEEEEEccccccCHHHHHHHHH---hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCc
Confidence 99999999999999999999999999877 223478999999999999999999999999999999999999988776
Q ss_pred HHHH
Q 000680 812 FEQL 815 (1354)
Q Consensus 812 ~~~~ 815 (1354)
|.++
T Consensus 707 y~~l 710 (711)
T TIGR00958 707 YKHL 710 (711)
T ss_pred hHhc
Confidence 6554
No 15
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=3.4e-64 Score=647.53 Aligned_cols=534 Identities=22% Similarity=0.279 Sum_probs=421.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 268 RKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGM 347 (1354)
Q Consensus 268 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 347 (1354)
++...+.+++.+....++.++..++.++.|++++.+++..-... .....+.+++++++..++..++.....+...+.+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (694)
T TIGR03375 138 FWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQ-AFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGK 216 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667888888888888888999999999999988653221 12222233333333444455544444456678899
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000680 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW--FHLTWSLALQLFLAIGVLFGVVGLGALPGLV 425 (1354)
Q Consensus 348 rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~--~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~ 425 (1354)
++...+...+|+|.++++... .+.++|++++.+ .|++.+.++... +..+...+. +++.+++++..-++.+++.++
T Consensus 217 ~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li~l~ 293 (694)
T TIGR03375 217 KADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPF-ALLFLLVIAIIGGPLVWVPLV 293 (694)
T ss_pred HHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHH
Confidence 999999999999999998765 567899999999 799999986542 233333333 333344444444444455554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 426 LFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTV 505 (1354)
Q Consensus 426 v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~ 505 (1354)
++.+.+.+...+.+..++..++.++..+++.+.+.|.++|+++||.+++|+.+.++.++..++..+...+..........
T Consensus 294 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (694)
T TIGR03375 294 AIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATN 373 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555667788888999999999999999999999999999999999999998888777766555544433332222
Q ss_pred HHHHHHHH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchh
Q 000680 506 IYWMSPTI--ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV 583 (1354)
Q Consensus 506 ~~~~~p~~--v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~ 583 (1354)
+......+ +.++.++++.... +.+|.+..+..+.++..+..|+..++..+..+.+++++.+|+.++++.++..+...
T Consensus 374 ~~~~~~~~~~~~il~~g~~~v~~-g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~ 452 (694)
T TIGR03375 374 FAQFIQQLVSVAIVVVGVYLISD-GELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGT 452 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 21111111 1122333444444 78999999999999999999999999999999999999999999997654322111
Q ss_pred hhccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----
Q 000680 584 RRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----- 658 (1354)
Q Consensus 584 ~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g----- 658 (1354)
.....+...+.|+++|++|+|+++ ++++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 453 ~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~ 531 (694)
T TIGR03375 453 RFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQ 531 (694)
T ss_pred CCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhh
Confidence 111112234579999999999754 45799999999999999999999999999999999999999999999987
Q ss_pred --------eEEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 000680 659 --------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1354)
Q Consensus 659 --------~i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1354)
+|+||||+|+++++||+|||.++.+ .+++++.++++.++++++++.+|+|.+|.+||+|.+||||||||++
T Consensus 532 ~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRla 611 (694)
T TIGR03375 532 IDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVA 611 (694)
T ss_pred CCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHH
Confidence 5999999999999999999999986 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhc
Q 000680 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 730 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
||||++++|++++||||||+||+++++++.+.+ ....+++|+|+|||+++.++.||+|++|++|++++.|+++|+++.
T Consensus 612 lARall~~p~iliLDE~Ts~LD~~te~~i~~~l-~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 612 LARALLRDPPILLLDEPTSAMDNRSEERFKDRL-KRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999999999999999999999999998765 444578999999999999999999999999999999999999753
No 16
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=3.2e-63 Score=627.90 Aligned_cols=542 Identities=17% Similarity=0.212 Sum_probs=412.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMR 350 (1354)
Q Consensus 271 l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir 350 (1354)
+++.+++.++...+..++..++..+.|+++..+++........ .....++..+++..++..++.....+...+++.++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 97 (582)
T PRK11176 19 TIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADR-SVLKWMPLVVIGLMILRGITSFISSYCISWVSGKVV 97 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666677777778888888887755432211 111111222222333333433333345567788888
Q ss_pred HHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000680 351 SALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFP-FWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1354)
Q Consensus 351 ~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~-~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~i 429 (1354)
..+...+|+|.++++...-.+.++|+++|.++.|++++.+.. ..+..++..++.+++++++++..-++.+++.++++.+
T Consensus 98 ~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l 177 (582)
T PRK11176 98 MTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPI 177 (582)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999998777777889999999999999998753 3444555666666666666555433333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000680 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYW- 508 (1354)
Q Consensus 430 ~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~- 508 (1354)
...+...+.+.+++..++.++..++..+..+|.++|+++||.|++|+.+.++.++.-++-.+...+..........+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (582)
T PRK11176 178 VSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQL 257 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455677778888888899999999999999999999999999877766655444332222222222221111111
Q ss_pred HHHHHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhhcc
Q 000680 509 MSPTII-SSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRIS 587 (1354)
Q Consensus 509 ~~p~~v-~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~ 587 (1354)
+..+.. .++.++++.... +.++.+.+.+.++++..+..|+..+...+..+.+++.+.+|+.++++.++.++.. ...
T Consensus 258 ~~~~~~~~i~~~g~~~~~~-g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~--~~~ 334 (582)
T PRK11176 258 IASLALAFVLYAASFPSVM-DTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEG--KRV 334 (582)
T ss_pred HHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC--CcC
Confidence 111111 222333444444 6899999988888888899999999999999999999999999999765432211 111
Q ss_pred ccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------
Q 000680 588 LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1354)
Q Consensus 588 ~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------- 658 (1354)
.+...+.|+++|++|+|+++ ++++|+|+|++|++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 335 ~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~ 413 (582)
T PRK11176 335 IERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLA 413 (582)
T ss_pred CCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHH
Confidence 12233469999999999754 45799999999999999999999999999999999999999999999987
Q ss_pred ----eEEEEeCCCCCCCCcHHHHHhcCCC--CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 000680 659 ----SIAYVSQTSWIQSGSIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1354)
Q Consensus 659 ----~i~yv~Q~~~~~~~ti~eni~~g~~--~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1354)
.|+|+||+|.++++|++|||.+|.+ +++++++++++.++++++++.+|+|.+|.+|++|.+||||||||++|||
T Consensus 414 ~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LAR 493 (582)
T PRK11176 414 SLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIAR 493 (582)
T ss_pred HHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHH
Confidence 4899999999999999999999853 7889999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcCchH
Q 000680 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812 (1354)
Q Consensus 733 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 812 (1354)
|++++|++++|||||||||+++++.+++.+. ...+++|+|+|||+++.++.||+|++|++|+|++.|+++++++.++.|
T Consensus 494 all~~~~ililDEptsaLD~~t~~~i~~~l~-~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~~y 572 (582)
T PRK11176 494 ALLRDSPILILDEATSALDTESERAIQAALD-ELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVY 572 (582)
T ss_pred HHHhCCCEEEEECccccCCHHHHHHHHHHHH-HHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCChH
Confidence 9999999999999999999999999887654 345679999999999999999999999999999999999999988888
Q ss_pred HHHHHH
Q 000680 813 EQLVNA 818 (1354)
Q Consensus 813 ~~~~~~ 818 (1354)
.++...
T Consensus 573 ~~l~~~ 578 (582)
T PRK11176 573 AQLHKM 578 (582)
T ss_pred HHHHHH
Confidence 888654
No 17
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=3.6e-63 Score=639.39 Aligned_cols=536 Identities=24% Similarity=0.286 Sum_probs=411.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMR 350 (1354)
Q Consensus 271 l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir 350 (1354)
..+.+++.++...+..++..++.++.|+++..+++..-... ....-+.+++++++..++..++.....+...+.+.++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (708)
T TIGR01193 150 LITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHK-MMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLS 228 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777888888999999999999887543221 11112223333333344444444334456677888899
Q ss_pred HHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000680 351 SALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW--FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1354)
Q Consensus 351 ~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~--~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~ 428 (1354)
..+...+|+|.++++....++.++|+++|.++ |++++.++... +..+...+. +++.+++++..-++.+++.++++.
T Consensus 229 ~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li~l~~~~ 306 (708)
T TIGR01193 229 IDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWI-LVIVGLFLVRQNMLLFLLSLLSIP 306 (708)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999876666788999999998 99998875432 122223333 333333343332222333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q 000680 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQ----LRKAYGT 504 (1354)
Q Consensus 429 i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~----~~~~~~~ 504 (1354)
+...+...+.+..++..++.++..+++.+...|.++|+++||.+++|+.+.++.++..++..+.-.+.. ....+..
T Consensus 307 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (708)
T TIGR01193 307 VYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKA 386 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344556788888889999999999999999999999999999999888777665544333222222 2222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhh
Q 000680 505 VIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVR 584 (1354)
Q Consensus 505 ~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~ 584 (1354)
++....+ +.++.++++... ++.+|.+.+++...++..+..|+..+...+..+.+++++.+|+.+++..++..+....
T Consensus 387 ~~~~~~~--i~il~~g~~lv~-~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~ 463 (708)
T TIGR01193 387 VTKLILN--VVILWTGAYLVM-RGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKK 463 (708)
T ss_pred HHHHHHH--HHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccc
Confidence 2222222 122233344434 4789999999999999999999999999999999999999999999976532221111
Q ss_pred hccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------
Q 000680 585 RISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1354)
Q Consensus 585 ~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------ 658 (1354)
....+...+.|+++|++|+|++ ++++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 464 ~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~ 541 (708)
T TIGR01193 464 RTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDI 541 (708)
T ss_pred ccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHc
Confidence 1111223467999999999974 35799999999999999999999999999999999999999999999998
Q ss_pred -------eEEEEeCCCCCCCCcHHHHHhcCC--CCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 000680 659 -------SIAYVSQTSWIQSGSIRDNILYGK--PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1354)
Q Consensus 659 -------~i~yv~Q~~~~~~~ti~eni~~g~--~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1354)
+||||||+|+++++||+|||.++. ..+++++.++++.++++++++.+|+|.+|.+|++|.+||||||||++
T Consensus 542 ~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRia 621 (708)
T TIGR01193 542 DRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIA 621 (708)
T ss_pred CHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHH
Confidence 499999999999999999999983 46788999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcC
Q 000680 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 730 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
||||++++|++++||||||+||+++++++.+.+.. .+++|+|+|||+++.+..||+|++|++|++++.|+++|+++.+
T Consensus 622 lARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~--~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~ 699 (708)
T TIGR01193 622 LARALLTDSKVLILDESTSNLDTITEKKIVNNLLN--LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRN 699 (708)
T ss_pred HHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHH--hcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcC
Confidence 99999999999999999999999999999887754 3689999999999999999999999999999999999999888
Q ss_pred chHHHHH
Q 000680 810 TAFEQLV 816 (1354)
Q Consensus 810 ~~~~~~~ 816 (1354)
+.|.++.
T Consensus 700 ~~y~~l~ 706 (708)
T TIGR01193 700 GFYASLI 706 (708)
T ss_pred CcHHHHh
Confidence 7777764
No 18
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=9.1e-63 Score=623.04 Aligned_cols=543 Identities=19% Similarity=0.259 Sum_probs=421.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1354)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ri 349 (1354)
.+.+.+++.+++..++.++..++....|+++..+++..-... ....-+.+++.+++..++..+......+...+.+.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 85 (571)
T TIGR02203 7 SYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGR-DRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKV 85 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888888888888899999999888776432211 1111112222233333334444333344567788888
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000680 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1354)
Q Consensus 350 r~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~ 428 (1354)
...+...+|+|.++.+....++.+.|++.|.++.|++++.++.. .+..++...+.+++++++++..-++.+++.++++.
T Consensus 86 ~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~ 165 (571)
T TIGR02203 86 VRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLP 165 (571)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 88888899999999887766778899999999999999987553 44555555555666665555433333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYW 508 (1354)
Q Consensus 429 i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~ 508 (1354)
+.+.+...+.+..++..++..+..+++.+..+|.++|+++||.++.|+.+.++.++..++..+...+.....+....+..
T Consensus 166 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (571)
T TIGR02203 166 VLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQ 245 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556778888888999999999999999999999999999999988777776666554433333222222222111
Q ss_pred HHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhhcc
Q 000680 509 MSP-TIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRIS 587 (1354)
Q Consensus 509 ~~p-~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~ 587 (1354)
... +...++.+.+..+..++.+|++.+++.+.++..+..|+..+...+..+.+++++.+|+.+++..++..+... .+
T Consensus 246 ~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~--~~ 323 (571)
T TIGR02203 246 LIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGT--RA 323 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC--CC
Confidence 111 112222223333333478999999999999999999999999999999999999999999997654322111 11
Q ss_pred ccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------
Q 000680 588 LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1354)
Q Consensus 588 ~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------- 658 (1354)
.....+.|+++|++|+|++. ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 324 ~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~ 402 (571)
T TIGR02203 324 IERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLA 402 (571)
T ss_pred CCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHH
Confidence 11234579999999999764 35799999999999999999999999999999999999999999999988
Q ss_pred ----eEEEEeCCCCCCCCcHHHHHhcCC--CCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 000680 659 ----SIAYVSQTSWIQSGSIRDNILYGK--PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1354)
Q Consensus 659 ----~i~yv~Q~~~~~~~ti~eni~~g~--~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1354)
+++|+||+|+++++|++|||.++. +.+++++.++++.|+++++++.+|+|.+|.+|++|.+||||||||++|||
T Consensus 403 ~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLAR 482 (571)
T TIGR02203 403 SLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIAR 482 (571)
T ss_pred HHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHH
Confidence 499999999999999999999985 48899999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcCchH
Q 000680 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812 (1354)
Q Consensus 733 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 812 (1354)
|++++|++++||||||+||+++++++.+.+. ...+++|+|+|||+.+.++.||+|++|++|++++.|+++++++.++.+
T Consensus 483 all~~~~illLDEpts~LD~~~~~~i~~~L~-~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~~~ 561 (571)
T TIGR02203 483 ALLKDAPILILDEATSALDNESERLVQAALE-RLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLY 561 (571)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHH-HHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCCHH
Confidence 9999999999999999999999999987664 445789999999999999999999999999999999999999877777
Q ss_pred HHHHH
Q 000680 813 EQLVN 817 (1354)
Q Consensus 813 ~~~~~ 817 (1354)
.++.+
T Consensus 562 ~~~~~ 566 (571)
T TIGR02203 562 AQLHN 566 (571)
T ss_pred HHHHH
Confidence 76654
No 19
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.5e-63 Score=619.93 Aligned_cols=539 Identities=23% Similarity=0.327 Sum_probs=406.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCCCcchh-HH--HHHHH-HHHHHHHHHHHHHHHHHH
Q 000680 269 KVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNY----SNRGEENLQ-EG--LSIVG-CLIITKVVESFTQRHCFF 340 (1354)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~----~~~~~~~~~-~g--~~~~~-~l~~~~~~~~~~~~~~~~ 340 (1354)
+-+++.-++++....+..+...+.+...|.+-..+... ...+++... .. |.++. ++.+...+..+ .++|+|
T Consensus 653 ~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~-~q~~~f 731 (1228)
T KOG0055|consen 653 WRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNF-LQHYFF 731 (1228)
T ss_pred HHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 34555556666666666667777788888765544432 222221111 11 22221 22222222222 344444
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-----HHHHHHHHHHHHHHHHHHHH
Q 000680 341 --GSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-----WFHLTWSLALQLFLAIGVLF 413 (1354)
Q Consensus 341 --~~~~~~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-----~~~~~w~~plqi~~~~~~L~ 413 (1354)
.+.++..|+|......+.++...+.+.. +++ |.+.+.+++|+..+...+. .+..+-+...-+++++++-
T Consensus 732 ~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~--~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~- 807 (1228)
T KOG0055|consen 732 GIAGEKLTKRLRSMMFRALLRQEVGWFDDP--ENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYG- 807 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccCCC--ccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 5678888999887777777777777653 456 9999999999987654332 1222222223333333333
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHH----HHHHHHH
Q 000680 414 GVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLI----ESRREKE 489 (1354)
Q Consensus 414 ~~lG~~~l~gl~v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i----~~~R~~E 489 (1354)
|.+++.+++-.+++++. .+...+.+.+..++.++..++--++.+|++.+||+||.|+-|+.|.+.. +..++.+
T Consensus 808 W~lalv~la~~Pll~~~---~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~ 884 (1228)
T KOG0055|consen 808 WRLALVVLATFPLLILS---GYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSS 884 (1228)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 44554444444444433 3445777888899999999999999999999999999999998875544 3333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 490 FKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRI 569 (1354)
Q Consensus 490 l~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri 569 (1354)
.+.-.......++...+ .-...++..+.+..++.++..++..+|.++.++..-...+.+.....+.+..|+.|..+|
T Consensus 885 ~~~~~i~gl~f~~sqs~---~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~i 961 (1228)
T KOG0055|consen 885 FKRGLISGLGFGFSQSL---LFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSI 961 (1228)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 33222222222222111 112223334455566667889999999998888777777777777788899999999999
Q ss_pred HHHhcccC-CCcchhhhccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc
Q 000680 570 NAFLLDHE-LNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP 648 (1354)
Q Consensus 570 ~~fL~~~e-~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~ 648 (1354)
.+.++.+. +++++......++-.+.|+++|++|+||.+++.++|+|+||+|++|+.+|+|||+||||||.+.+|.+.|+
T Consensus 962 F~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd 1041 (1228)
T KOG0055|consen 962 FEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD 1041 (1228)
T ss_pred HHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 99998664 44432122223345678999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcC-------------eEEEEeCCCCCCCCcHHHHHhcC-CCCCHHHHHHHHHHhccHHHHhcCCCCCccccc
Q 000680 649 KISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYG-KPMDKARYDKAIKACALDKDINNFDHGDLTEIG 714 (1354)
Q Consensus 649 ~~~G~i~~~g-------------~i~yv~Q~~~~~~~ti~eni~~g-~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig 714 (1354)
|++|.|.++| ++|.|+|+|.+|+.||||||++| ...++++..++++.+..++.+..||+|++|.+|
T Consensus 1042 p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vG 1121 (1228)
T KOG0055|consen 1042 PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVG 1121 (1228)
T ss_pred CCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccC
Confidence 9999999998 59999999999999999999999 346889999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCC
Q 000680 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGG 794 (1354)
Q Consensus 715 ~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G 794 (1354)
|+|.+||||||||||||||+++||+||||||.|||||.++++- .++.++....|+|+|+|+|+++.+++||.|+|++||
T Consensus 1122 erG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErv-VQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G 1200 (1228)
T KOG0055|consen 1122 ERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERV-VQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNG 1200 (1228)
T ss_pred cccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHH-HHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECC
Confidence 9999999999999999999999999999999999999999875 577888888999999999999999999999999999
Q ss_pred eEEEecChHHHHhcCchHHHHHHHh
Q 000680 795 QITQSGNYQELLLAGTAFEQLVNAH 819 (1354)
Q Consensus 795 ~i~~~g~~~~l~~~~~~~~~~~~~~ 819 (1354)
+|+|+|+|++|++.++.|.+++..+
T Consensus 1201 ~VvE~GtH~~L~~~~G~Y~~Lv~~q 1225 (1228)
T KOG0055|consen 1201 KVVEQGTHDELLAKRGIYFRLVQLQ 1225 (1228)
T ss_pred EEEecccHHHHHhCCCchHHHhhhc
Confidence 9999999999999999999887543
No 20
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=7.6e-62 Score=615.77 Aligned_cols=538 Identities=18% Similarity=0.251 Sum_probs=407.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRG-EENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1354)
Q Consensus 271 l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~-~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ri 349 (1354)
..+.+++.++...++.++..++..+.|+++..+++-.... ..+......++.++++..++..++.....+...+.+.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (592)
T PRK10790 17 YGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGV 96 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777788888888999999999888854322 111111112222233333344444444445667788888
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHH
Q 000680 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLF---GVVGLGALPGLV 425 (1354)
Q Consensus 350 r~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~-~~~~w~~plqi~~~~~~L~---~~lG~~~l~gl~ 425 (1354)
...+...+|+|.++.+.....+.++|+++|.++.|++++.+.... +..+....+.+++++++++ +.+++..+++++
T Consensus 97 ~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~ 176 (592)
T PRK10790 97 VQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFP 176 (592)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999998776666788999999999999999875443 2233333333333333332 233333333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 000680 426 LFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY--G 503 (1354)
Q Consensus 426 v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~--~ 503 (1354)
++ +.+.....+..++..++..+..++-.+..+|.++|+++||.|+.|+.+.++..+..++..+...+.....+. .
T Consensus 177 i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (592)
T PRK10790 177 AV---LVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLR 253 (592)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 222334456666777777778888889999999999999999999999888877655433322111111111 1
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcch
Q 000680 504 TVIYWMSPTI-ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDD 582 (1354)
Q Consensus 504 ~~~~~~~p~~-v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~ 582 (1354)
.+.....-++ +.++.+.++ .. .+.++.+.++..+.++..+..|+..++.....+.+++.|.+||.++++.++.+...
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~-~~-~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~ 331 (592)
T PRK10790 254 PLLSLFSALILCGLLMLFGF-SA-SGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN 331 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HH-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC
Confidence 1111111111 111122233 22 36799999999999999999999999999999999999999999999765432111
Q ss_pred hhhccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----
Q 000680 583 VRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---- 658 (1354)
Q Consensus 583 ~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---- 658 (1354)
. ......+.|+++|++|+|+++ +++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 332 -~--~~~~~~~~i~~~~v~f~y~~~--~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~ 406 (592)
T PRK10790 332 -D--DRPLQSGRIDIDNVSFAYRDD--NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLS 406 (592)
T ss_pred -C--ccCCCCCeEEEEEEEEEeCCC--CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhh
Confidence 1 111234579999999999743 5799999999999999999999999999999999999999999999987
Q ss_pred ---------eEEEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 000680 659 ---------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1354)
Q Consensus 659 ---------~i~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1354)
+|+||||+|.+|++|++|||.++.+.++++..+++++++++++++.+|+|.+|.+|++|.+||||||||++
T Consensus 407 ~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRia 486 (592)
T PRK10790 407 SLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLA 486 (592)
T ss_pred hCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHH
Confidence 49999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcC
Q 000680 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 730 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
||||++++|+|++||||||+||+++++.+.+.+. ...+++|+|+|||+++.++.+|+|++|++|++++.|+++|+++.+
T Consensus 487 lARaLl~~~~illlDEpts~LD~~t~~~i~~~l~-~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~ 565 (592)
T PRK10790 487 LARVLVQTPQILILDEATANIDSGTEQAIQQALA-AVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ 565 (592)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHH-HHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999999999877654 444679999999999999999999999999999999999999988
Q ss_pred chHHHHHHHh
Q 000680 810 TAFEQLVNAH 819 (1354)
Q Consensus 810 ~~~~~~~~~~ 819 (1354)
+.|.++.+.+
T Consensus 566 ~~y~~l~~~~ 575 (592)
T PRK10790 566 GRYWQMYQLQ 575 (592)
T ss_pred CHHHHHHHHH
Confidence 8888887644
No 21
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=7.4e-62 Score=615.02 Aligned_cols=542 Identities=20% Similarity=0.266 Sum_probs=412.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 269 KVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNY-SNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGM 347 (1354)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~-~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 347 (1354)
+.+.+.+++.+.+..++.++..++.++.|+++..+++. +.+.+. ..-..++..+++..++..+......+...+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (576)
T TIGR02204 10 WPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSS--GLLNRYFAFLLVVALVLALGTAARFYLVTWLGE 87 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566677777778888888999999999998886 322211 111112222222222333333344456678889
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHH---HHHhHHHHHH
Q 000680 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLF---GVVGLGALPG 423 (1354)
Q Consensus 348 rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~---~~lG~~~l~g 423 (1354)
++...+...+|+|.++.+.....+.+.|+++|.++.|++.+.++.. .+..+....+.+++++++++ +.+++.++++
T Consensus 88 ~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 167 (576)
T TIGR02204 88 RVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLA 167 (576)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999877655667899999999999999987643 33344444444444444333 3344433332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 424 LVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYG 503 (1354)
Q Consensus 424 l~v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~ 503 (1354)
++++ +.+...+.+.+++..++.++..++..+...|.++|+++||.+++|+.+.++.++..++..+..++........
T Consensus 168 ~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (576)
T TIGR02204 168 VPLV---LLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALL 244 (576)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 2223346777888888899999999999999999999999999999987777665554443333322221111
Q ss_pred HHHH-HHHHHH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcc
Q 000680 504 TVIY-WMSPTI-ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNND 581 (1354)
Q Consensus 504 ~~~~-~~~p~~-v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~ 581 (1354)
..+. .+.... +....++++.... +.+|.+.+++...++..+..|+..++..+..+.+++++++|+.+++..++..+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~g~~~v~~-g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 323 (576)
T TIGR02204 245 TAIVIVLVFGAIVGVLWVGAHDVIA-GKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKA 323 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCC
Confidence 1111 111111 2222233443344 789999999999999999999999999999999999999999999976432111
Q ss_pred hhhhcc-ccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--
Q 000680 582 DVRRIS-LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-- 658 (1354)
Q Consensus 582 ~~~~~~-~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-- 658 (1354)
...... .....+.|+++|++|+|+++.++++|+|+||++++||.++|+|+||||||||+++|+|+++|.+|+|.++|
T Consensus 324 ~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~ 403 (576)
T TIGR02204 324 PAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVD 403 (576)
T ss_pred CCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEE
Confidence 111111 11123569999999999864346799999999999999999999999999999999999999999999987
Q ss_pred -----------eEEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHH
Q 000680 659 -----------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1354)
Q Consensus 659 -----------~i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkq 726 (1354)
.++|+||+|+++++|++|||.++.+ .++++..++++.+++.++++.+|+|.+|.+|++|.+|||||||
T Consensus 404 i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Q 483 (576)
T TIGR02204 404 LRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQ 483 (576)
T ss_pred HHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHH
Confidence 4999999999999999999999875 5678899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHH
Q 000680 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806 (1354)
Q Consensus 727 Rv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 806 (1354)
|++||||++++|++++||||||+||+++++.+++.+.. ..+++|+|+|||+++.++.+|+|++|++|++++.|+++++.
T Consensus 484 rl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~-~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 484 RIAIARAILKDAPILLLDEATSALDAESEQLVQQALET-LMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELI 562 (576)
T ss_pred HHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHH-HhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHH
Confidence 99999999999999999999999999999988776544 45789999999999999999999999999999999999999
Q ss_pred hcCchHHHHHH
Q 000680 807 LAGTAFEQLVN 817 (1354)
Q Consensus 807 ~~~~~~~~~~~ 817 (1354)
++++.|.++.+
T Consensus 563 ~~~~~~~~l~~ 573 (576)
T TIGR02204 563 AKGGLYARLAR 573 (576)
T ss_pred HcCChHHHHHh
Confidence 88887877653
No 22
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6e-64 Score=597.52 Aligned_cols=459 Identities=23% Similarity=0.315 Sum_probs=382.3
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHHHhhhcC-----CC-CcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 886 WKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI-----PK-ITSGILIGVYAGVSTASAVFVYFRSFFA 959 (1354)
Q Consensus 886 ~~~y~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~-----~~-~~~~~~~~iy~~l~~~~~i~~~~~~~~~ 959 (1354)
++..+.|.+...+ .+...+.+.++.....+..+++++..++. .. ........+..++.++++++.+++.+++
T Consensus 135 ~~rl~~l~~~~~~--~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~ 212 (716)
T KOG0058|consen 135 LKRLLGLLKPEWK--WLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLL 212 (716)
T ss_pred HHHHHHHhchhHH--HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566554322 23333333333444455666665544332 11 1111234556677788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000680 960 AHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLV 1039 (1354)
Q Consensus 960 ~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l 1039 (1354)
.+.+.+...++|.++|++++|+.++|||.+.+|+|+||+++|...+...++..+...+.+.++.++.+++|++.+|.+.+
T Consensus 213 ~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltl 292 (716)
T KOG0058|consen 213 QYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTL 292 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000680 1040 VAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVME 1119 (1354)
Q Consensus 1040 ~~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1119 (1354)
+.+..+++...+.++|.+..|++.+..+++-+.......|.+++++|||+|+.|++..++|.+.+++..+..........
T Consensus 293 v~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~ 372 (716)
T KOG0058|consen 293 VTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYG 372 (716)
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999877666544443333
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCC
Q 000680 1120 WLILRVEALQNLTLFTA-ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPP 1198 (1354)
Q Consensus 1120 wl~~~l~~l~~~~~~~~-~~~~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~ 1198 (1354)
.+....++.+++..+.+ .....++..|.+++|.+..++.|...+...+.++...++++.+...|.+|++||+|.+|.-+
T Consensus 373 ~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~ 452 (716)
T KOG0058|consen 373 IFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIP 452 (716)
T ss_pred HhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCC
Confidence 33333344444433333 33355677899999999999999999999999999999999999999999999999877644
Q ss_pred CCCCCCCCCCCCCCcceEEEEEEEEEeC--CCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEE
Q 000680 1199 AIVEDKRPPSSWPFKGRIELRQLKIRYR--PNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI 1276 (1354)
Q Consensus 1199 ~~~~~~~~~~~wp~~G~I~f~nVsf~Y~--~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~I 1276 (1354)
.. +...|. ..+|.|+|+||+|+|+ |+. +||||+||+|+|||+||+||||||||||++++|.|||||++|+|++
T Consensus 453 ~~--G~~~p~--~~~G~IeF~~VsFaYP~Rp~~-~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Ill 527 (716)
T KOG0058|consen 453 LT--GTLAPD--HLQGVIEFEDVSFAYPTRPDV-PVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILL 527 (716)
T ss_pred CC--Cccccc--cccceEEEEEeeeecCCCCCc-hhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEE
Confidence 32 222222 4689999999999994 444 4999999999999999999999999999999999999999999999
Q ss_pred cCeeCCCCChHHHhccCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCCcCCC----Cccccc
Q 000680 1277 DGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSS----GKLFSA 1351 (1354)
Q Consensus 1277 DGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~gldt~----G~n~s~ 1351 (1354)
||+||++++.+.||++||+|.|||+||+|||||||.+.. +.+||||.+|+++||.||||+++|+||||. |..+|-
T Consensus 528 DG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSG 607 (716)
T KOG0058|consen 528 DGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSG 607 (716)
T ss_pred CCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccc
Confidence 999999999999999999999999999999999996432 589999999999999999999999999993 445553
No 23
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.2e-61 Score=606.97 Aligned_cols=540 Identities=21% Similarity=0.254 Sum_probs=403.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSN-RGEE--NLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGM 347 (1354)
Q Consensus 271 l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~-~~~~--~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 347 (1354)
+.+.+++.+++..++.++..++..+.|.++..+++-.. .+.. .....+..++++++..++..++.....+...+.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (574)
T PRK11160 10 LYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDATF 89 (574)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777778888888899999999998887431 1110 00111111222323333444444334456678888
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHH---HHHhHHHHHH
Q 000680 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLF---GVVGLGALPG 423 (1354)
Q Consensus 348 rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~---~~lG~~~l~g 423 (1354)
++...+...+|+|.++++....++..+|++++.++.|++++.++.. .+..+....+.+++++++++ +.+++.++++
T Consensus 90 ~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~ 169 (574)
T PRK11160 90 RVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGI 169 (574)
T ss_pred HHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988777778899999999999999998654 34444444455554444443 3444433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 424 LVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYG 503 (1354)
Q Consensus 424 l~v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~ 503 (1354)
++++.+++ ...+.+..++..++..+..++..+.+.|.++|+++||.|+.|+.+.++.++..++-.+.-.+.....+..
T Consensus 170 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (574)
T PRK11160 170 LLLLLLLL--PLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLS 247 (574)
T ss_pred HHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222222 2345666777788888888999999999999999999999999887777665544333222222222221
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcc
Q 000680 504 TV-IYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRS-MGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNND 581 (1354)
Q Consensus 504 ~~-~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~-l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~ 581 (1354)
.. ...+....+.++.+.+..+.. +.++.+..++.+.+... ...|+..++..+..+.++++|.+||.++++.++..+.
T Consensus 248 ~~~~~~~~~~~~~~i~~~g~~~~~-g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~ 326 (574)
T PRK11160 248 QALMILANGLTVVLMLWLAAGGVG-GNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTF 326 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 11 111122222222333333343 67788876665554433 3468888899999999999999999999976432111
Q ss_pred hhhhccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---
Q 000680 582 DVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--- 658 (1354)
Q Consensus 582 ~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--- 658 (1354)
. +........+.|+++|++|+|+++ ++++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 327 ~-~~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i 404 (574)
T PRK11160 327 P-TTSTAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPI 404 (574)
T ss_pred C-cccCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEh
Confidence 1 011111234579999999999753 34799999999999999999999999999999999999999999999987
Q ss_pred ----------eEEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 000680 659 ----------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1354)
Q Consensus 659 ----------~i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1354)
.|+||||+|+++++|++|||.++.+ .++++..++++.++++++++. |+|.+|.+||+|.+||||||||
T Consensus 405 ~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqR 483 (574)
T PRK11160 405 ADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRR 483 (574)
T ss_pred hhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHH
Confidence 3999999999999999999999875 678899999999999999999 9999999999999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHh
Q 000680 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 728 v~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
++||||++++|++++||||||+||+++++.+.+.+. ...+++|+|++||+++.++.||+|++|++|++++.|+++|+++
T Consensus 484 ialARall~~~~ililDE~ts~lD~~t~~~i~~~l~-~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 484 LGIARALLHDAPLLLLDEPTEGLDAETERQILELLA-EHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-HHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999999999999999999887654 4457899999999999999999999999999999999999999
Q ss_pred cCchHHHHHH
Q 000680 808 AGTAFEQLVN 817 (1354)
Q Consensus 808 ~~~~~~~~~~ 817 (1354)
+++.|.++.+
T Consensus 563 ~~g~y~~l~~ 572 (574)
T PRK11160 563 QQGRYYQLKQ 572 (574)
T ss_pred cCcHHHHHHh
Confidence 9888887653
No 24
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.5e-61 Score=605.00 Aligned_cols=526 Identities=21% Similarity=0.268 Sum_probs=398.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 000680 287 LLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSS 366 (1354)
Q Consensus 287 ~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~~~iy~K~L~ls~ 366 (1354)
++..++..+.|+++..+++............+.+++.+++..++..++.....+...+.+.++...+...+|+|.++++.
T Consensus 5 ~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~ 84 (569)
T PRK10789 5 IIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHP 84 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 44556677889999998886533211112222333344444444444443334455667888888899999999999887
Q ss_pred ccCCCCCHHHHHHHHHhHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 367 LGRKKHSTGEIVNYIAVDAYRMGEFP-FWFHLTWSLALQLFLAIGVLFGVVGLG-ALPGLVLFLICGLLNVPFAKILQKC 444 (1354)
Q Consensus 367 ~~~~~~~~G~ivNlms~D~~~i~~~~-~~~~~~w~~plqi~~~~~~L~~~lG~~-~l~gl~v~~i~~~l~~~~~~~~~~~ 444 (1354)
....+.++|+++|.++.|++++.+.. ..+..++..++.+++++++++..++|. +++.++++.+.+.+...+.+.+.+.
T Consensus 85 ~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~ 164 (569)
T PRK10789 85 EFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHER 164 (569)
T ss_pred HHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667789999999999999998654 345555655555555544443334442 2333333333333344456667777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 445 QSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRRE----KEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFL 520 (1354)
Q Consensus 445 q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~----~El~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~ 520 (1354)
.++..+..++..+.++|.++|+++||.|++|+.+.++..+..+ .+.+..+.............. ....++.+.
T Consensus 165 ~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~ 241 (569)
T PRK10789 165 FKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIG---MANLLAIGG 241 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 7777777888889999999999999999999987666655333 333322221111111111111 111112222
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhhccccCCCCcEEEEee
Q 000680 521 GCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEG 600 (1354)
Q Consensus 521 ~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~ 600 (1354)
+..++.++.+|.+.+++.+.++..+..|+..++..+..+.+++++.+||.+++..++..+.. ..+.+..++.|+++|+
T Consensus 242 g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~--~~~~~~~~~~I~~~~v 319 (569)
T PRK10789 242 GSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDG--SEPVPEGRGELDVNIR 319 (569)
T ss_pred HHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC--CCCCCCCCCcEEEEEE
Confidence 22333347899999999999999999999999999999999999999999999765322111 1111123457999999
Q ss_pred EEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEEEeCCC
Q 000680 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTS 667 (1354)
Q Consensus 601 ~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~yv~Q~~ 667 (1354)
+|+|+.+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|+|
T Consensus 320 ~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 398 (569)
T PRK10789 320 QFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTP 398 (569)
T ss_pred EEECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCC
Confidence 9999754 35799999999999999999999999999999999999999999999987 489999999
Q ss_pred CCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCC
Q 000680 668 WIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1354)
Q Consensus 668 ~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep 746 (1354)
+++++|++|||.++.+ .++++++++++.+++++++..+|+|.+|.+|++|.+||||||||++||||++++|+++|||||
T Consensus 399 ~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEp 478 (569)
T PRK10789 399 FLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDA 478 (569)
T ss_pred eeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 9999999999999864 678889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcCchHHHHHHHh
Q 000680 747 FSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAH 819 (1354)
Q Consensus 747 ~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 819 (1354)
||+||+++++++.+.+.. ..+++|+|++||+++.++.+|+|++|++|++++.|++++++++++.|.++.+.+
T Consensus 479 ts~LD~~~~~~i~~~l~~-~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 550 (569)
T PRK10789 479 LSAVDGRTEHQILHNLRQ-WGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQ 550 (569)
T ss_pred cccCCHHHHHHHHHHHHH-HhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHh
Confidence 999999999999876544 457899999999999999999999999999999999999998888888876543
No 25
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=7.7e-61 Score=605.65 Aligned_cols=534 Identities=18% Similarity=0.249 Sum_probs=402.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 272 TNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRS 351 (1354)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~ 351 (1354)
.+.+++.+.+..+..++..++..+.|+++..+++.+.... .... ++..+++..++..+......+...++..++|.
T Consensus 14 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (588)
T PRK13657 14 LGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG-DIFP---LLAAWAGFGLFNIIAGVLVARHADRLAHRRRL 89 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677777788888889999999998888654321 1111 11111111122222222223445677788888
Q ss_pred HHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHH
Q 000680 352 ALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLF---GVVGLGALPGLVLF 427 (1354)
Q Consensus 352 ~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~---~~lG~~~l~gl~v~ 427 (1354)
.+...+|+|.++++.....+.++|++++.++.|++.+.+... .+.......+..++.+++++ +.+++..+++ +
T Consensus 90 ~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~---~ 166 (588)
T PRK13657 90 AVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVL---G 166 (588)
T ss_pred HHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 899999999999987766778999999999999999875432 22222222222222222222 2333333333 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 000680 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESR----REKEFKWLSEAQLRKAYG 503 (1354)
Q Consensus 428 ~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~----R~~El~~l~~~~~~~~~~ 503 (1354)
++...+...+.+..++.+++.++..++..+...|.++|+++||.|+.|+.+.++..+. ++.+.+..+.........
T Consensus 167 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (588)
T PRK13657 167 IVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLN 246 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333345566778888888889999999999999999999999999998776555443 333333222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchh
Q 000680 504 TVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV 583 (1354)
Q Consensus 504 ~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~ 583 (1354)
.+.... ..+.+..++++... ++.+|.+.+++++.++..+..|+..+...+..+.+++.+++|+.+++..++..+...
T Consensus 247 ~~~~~~--~~~~~~~~g~~~v~-~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~ 323 (588)
T PRK13657 247 RAASTI--TMLAILVLGAALVQ-KGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPP 323 (588)
T ss_pred HHHHHH--HHHHHHHHHHHHHH-cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCC
Confidence 111111 11223334444444 478999999999999999999999999999999999999999999987643221111
Q ss_pred hhccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----
Q 000680 584 RRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----- 658 (1354)
Q Consensus 584 ~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g----- 658 (1354)
.....+..++.|+++|++|+|+++ +++|+|+|+++++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 324 ~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~ 401 (588)
T PRK13657 324 GAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRT 401 (588)
T ss_pred CCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhh
Confidence 111111223469999999999743 4699999999999999999999999999999999999999999999987
Q ss_pred --------eEEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 000680 659 --------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1354)
Q Consensus 659 --------~i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1354)
.|+|+||+|+++++|++|||.++.+ .++++..++++.+++++.++.+|+|.+|.+|++|.+||||||||++
T Consensus 402 ~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRia 481 (588)
T PRK13657 402 VTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLA 481 (588)
T ss_pred CCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHH
Confidence 5999999999999999999999864 6788899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcC
Q 000680 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 730 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
||||++++|++++||||||+||+++++.+++.+.. ..+++|+|+|||+++.++.+|+|++|++|++++.|+++++++.+
T Consensus 482 lARall~~~~iliLDEpts~LD~~t~~~i~~~l~~-~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~ 560 (588)
T PRK13657 482 IARALLKDPPILILDEATSALDVETEAKVKAALDE-LMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARG 560 (588)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH-HhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCC
Confidence 99999999999999999999999999999876644 34689999999999999999999999999999999999999888
Q ss_pred chHHHHHHH
Q 000680 810 TAFEQLVNA 818 (1354)
Q Consensus 810 ~~~~~~~~~ 818 (1354)
+.|.++.+.
T Consensus 561 ~~y~~l~~~ 569 (588)
T PRK13657 561 GRFAALLRA 569 (588)
T ss_pred ChHHHHHHH
Confidence 888887754
No 26
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.5e-60 Score=613.21 Aligned_cols=543 Identities=21% Similarity=0.232 Sum_probs=415.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1354)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ri 349 (1354)
..++.+++.+....+..++..++.++.|+++..+++.+-... +....+.+++++++..++..++.....+...+++.++
T Consensus 132 ~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~-~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (694)
T TIGR01846 132 PAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHR-GLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRI 210 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777778888888889999999999887553211 1122223333344444445555444455667788899
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000680 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1354)
Q Consensus 350 r~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~ 428 (1354)
...+...+|+|.++++...-++.++|+++|.+ .|++.+.++.. .+.......+.+++.+++++..-++-+++.+++++
T Consensus 211 ~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~ 289 (694)
T TIGR01846 211 DVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLV 289 (694)
T ss_pred HHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987776778999999999 69999988643 22222222222333333443333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYW 508 (1354)
Q Consensus 429 i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~ 508 (1354)
+...+...+.+.+++..++.++..+++.+.+.|.++|+++||.++.|+.+.++.++.-++..+...+.............
T Consensus 290 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (694)
T TIGR01846 290 CYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIE 369 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455677778888888889999999999999999999999999988777766555444333333222222221111
Q ss_pred HHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhhcc
Q 000680 509 MSP-TIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRIS 587 (1354)
Q Consensus 509 ~~p-~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~ 587 (1354)
... ....++.+.+..++..+.+|.+.+.+...+...+..|+..+...+..+.+++++++|+.++++.++..+.. ....
T Consensus 370 ~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~-~~~~ 448 (694)
T TIGR01846 370 LIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA-GLAA 448 (694)
T ss_pred HHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC-CCCC
Confidence 111 11122223333333347899999999999999999999999999999999999999999999765432211 1111
Q ss_pred ccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------
Q 000680 588 LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1354)
Q Consensus 588 ~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------- 658 (1354)
.+..++.|+++|++|+|+++ ++++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 449 ~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~ 527 (694)
T TIGR01846 449 LPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPA 527 (694)
T ss_pred CCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHH
Confidence 12234679999999999754 35699999999999999999999999999999999999999999999988
Q ss_pred ----eEEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 000680 659 ----SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1354)
Q Consensus 659 ----~i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARa 733 (1354)
+|+||||+|.++++|++|||.++.+ .++++..++++.++++++++.+|+|.+|.+|++|.+||||||||++||||
T Consensus 528 ~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARa 607 (694)
T TIGR01846 528 WLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARA 607 (694)
T ss_pred HHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHH
Confidence 3899999999999999999999864 67888999999999999999999999999999999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcCchHH
Q 000680 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFE 813 (1354)
Q Consensus 734 l~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 813 (1354)
++++|++++||||||+||+++++.+.+.+.. ..+++|+|++||+++.++.||+|++|++|++++.|++++++++++.|.
T Consensus 608 ll~~~~ililDEpts~LD~~~~~~i~~~l~~-~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~~~y~ 686 (694)
T TIGR01846 608 LVGNPRILIFDEATSALDYESEALIMRNMRE-ICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYA 686 (694)
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHH-HhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcCChHH
Confidence 9999999999999999999999999876644 457899999999999999999999999999999999999999888888
Q ss_pred HHHH
Q 000680 814 QLVN 817 (1354)
Q Consensus 814 ~~~~ 817 (1354)
++.+
T Consensus 687 ~l~~ 690 (694)
T TIGR01846 687 RLWQ 690 (694)
T ss_pred HHHH
Confidence 8764
No 27
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=6e-61 Score=599.98 Aligned_cols=502 Identities=19% Similarity=0.248 Sum_probs=373.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 272 TNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRS 351 (1354)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~ 351 (1354)
.+.+++.++...++.++..++..+.|+++..+++........... +.++.++++..++..+......+...+.+.++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (529)
T TIGR02868 8 LQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPPVLYL-SVAAVAVRAFGIGRAVFRYLERLVGHDAALRSLG 86 (529)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666777778888888899999999988754322111111 1111111122233333332333455677888888
Q ss_pred HHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHH
Q 000680 352 ALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLF---GVVGLGALPGLVLF 427 (1354)
Q Consensus 352 ~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~-~~~~w~~plqi~~~~~~L~---~~lG~~~l~gl~v~ 427 (1354)
.+...+|+|.++++....++.++|+++|.++.|++++.+.... +..+....+.+++++++++ +.+++.++++++++
T Consensus 87 ~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~ 166 (529)
T TIGR02868 87 RLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLLA 166 (529)
T ss_pred HHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 8999999999999887777889999999999999999886543 3333444444444444443 34444444333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIY 507 (1354)
Q Consensus 428 ~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~ 507 (1354)
.++.+ ....+..++..++..+..++..+..+|.++|+++||.|++|+.+.++.++..++..+...+.....+....+.
T Consensus 167 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (529)
T TIGR02868 167 GFVAP--LVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQ 244 (529)
T ss_pred HHHHH--HHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 2223334555667778889999999999999999999999999988887766654444333333333222222
Q ss_pred HHHHHH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhh-
Q 000680 508 WMSPTI-ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRR- 585 (1354)
Q Consensus 508 ~~~p~~-v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~- 585 (1354)
.....+ ..++.+.+..++.++.+|.+.+.+.+.+...+..|+..++..+..+.++++|.+|+.++++.++..+.....
T Consensus 245 ~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~ 324 (529)
T TIGR02868 245 LLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPA 324 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCC
Confidence 221111 112222232333346899999998888889999999999999999999999999999999765432111000
Q ss_pred -ccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------
Q 000680 586 -ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1354)
Q Consensus 586 -~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------ 658 (1354)
.......+.|+++|++|+|+++ +++|+|+||++++||.++|+||+|||||||+++|+|+++|++|+|.++|
T Consensus 325 ~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~ 402 (529)
T TIGR02868 325 AGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL 402 (529)
T ss_pred CcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH
Confidence 0011123569999999999753 3699999999999999999999999999999999999999999999998
Q ss_pred ------eEEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000680 659 ------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1354)
Q Consensus 659 ------~i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1354)
+||||||+|++|++||+|||.+|.+ .+++++.++++.++++++++.+|+|.+|.|||+|.+||||||||++||
T Consensus 403 ~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiA 482 (529)
T TIGR02868 403 QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALA 482 (529)
T ss_pred HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHH
Confidence 7999999999999999999999865 688999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCc
Q 000680 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV 779 (1354)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~ 779 (1354)
||++++|+|++||||||+||+++++.|.+.+. ...+++|+|+|||++
T Consensus 483 Rall~~~~iliLDE~TSaLD~~te~~I~~~l~-~~~~~~TvIiItHrl 529 (529)
T TIGR02868 483 RALLADAPILLLDEPTEHLDAGTESELLEDLL-AALSGKTVVVITHHL 529 (529)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-HhcCCCEEEEEecCC
Confidence 99999999999999999999999999987765 456789999999985
No 28
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=9.8e-61 Score=598.83 Aligned_cols=519 Identities=20% Similarity=0.226 Sum_probs=398.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALM 354 (1354)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~ 354 (1354)
+++.++...++.++..++..+.|+++..+++..-... +....+.+++++++..++..++.....+...+.+.++...+.
T Consensus 4 ~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 82 (544)
T TIGR01842 4 NKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSG-SVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALN 82 (544)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777788888899999999999988543211 112222334444444555555555555677788999999999
Q ss_pred HHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHH--HHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHH
Q 000680 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW--FHLTWSLALQLFLA--IGVLFGVVGLGALPGLVLFLIC 430 (1354)
Q Consensus 355 ~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~--~~~~w~~plqi~~~--~~~L~~~lG~~~l~gl~v~~i~ 430 (1354)
..+|+|.++++.. ..+...+.++.|++++.++... +..+...++.++.+ ++.+.+.+++.+++++++++
T Consensus 83 ~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~-- 155 (544)
T TIGR01842 83 QPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLLVCFLLHPWIGILALGGAVVLV-- 155 (544)
T ss_pred HHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--
Confidence 9999999998752 2355677788999999876442 33334444433322 22223445554444443332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 431 GLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMS 510 (1354)
Q Consensus 431 ~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~ 510 (1354)
.+.....+..++..++.++..+++.+.++|.++|+++||.|++|+.+.++.++..++..+...+.....+....+....
T Consensus 156 -~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (544)
T TIGR01842 156 -GLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYF 234 (544)
T ss_pred -HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333456677777888899999999999999999999999999999988887766665444433333222222211111
Q ss_pred HHH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhhccc
Q 000680 511 PTI--ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISL 588 (1354)
Q Consensus 511 p~~--v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~~ 588 (1354)
..+ +.++.++++... ++.+|++.+++.+.++..+..|+..++..+..+.++++|.+|+.+++..++..+.. .+.
T Consensus 235 ~~~~~~~~~~~g~~l~~-~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~ 310 (544)
T TIGR01842 235 RIVLQSLVLGLGAYLAI-DGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA---MPL 310 (544)
T ss_pred HHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC---CCC
Confidence 111 122233344333 47899999999999999999999999999999999999999999999765432211 111
Q ss_pred cCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------
Q 000680 589 QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------- 658 (1354)
Q Consensus 589 ~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------- 658 (1354)
+..++.++++|++|+|+++ ++++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 311 ~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~ 389 (544)
T TIGR01842 311 PEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRET 389 (544)
T ss_pred CCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHH
Confidence 2233579999999999753 35799999999999999999999999999999999999999999999987
Q ss_pred ---eEEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 000680 659 ---SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1354)
Q Consensus 659 ---~i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1354)
.++|+||+|+++++|++|||.++.+ .+++++.++++.+++++.++.+|+|.+|.+|++|.+||||||||++||||+
T Consensus 390 ~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARal 469 (544)
T TIGR01842 390 FGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARAL 469 (544)
T ss_pred HhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHH
Confidence 4999999999999999999986654 778889999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHh
Q 000680 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
+++|++++||||||+||+++++.+.+.+.....+++|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 470 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 470 YGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred hcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999999988765444346899999999999988899999999999999999999864
No 29
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=2.2e-60 Score=598.91 Aligned_cols=533 Identities=24% Similarity=0.334 Sum_probs=404.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALM 354 (1354)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~ 354 (1354)
++ .+....++.++..++....|.++..+++......... ..+...+++..++..++.....+...+.+.++...+.
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr 88 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGEL---LELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLR 88 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56 6777777888888899999999998887654111111 1111122222223333333334455566688888888
Q ss_pred HHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHH
Q 000680 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWF-HLTWSLALQLFLAIGVLF---GVVGLGALPGLVLFLIC 430 (1354)
Q Consensus 355 ~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~~-~~~w~~plqi~~~~~~L~---~~lG~~~l~gl~v~~i~ 430 (1354)
..+|+|.++++....++...|++++.++.|++.+....... ..+-.+++.++..+++++ +.+++..+.+++++.+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~- 167 (567)
T COG1132 89 RDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLAL- 167 (567)
T ss_pred HHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-
Confidence 99999999999776677789999999999999998866543 222223333333333333 2344333333222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000680 431 GLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYG-TVIYWM 509 (1354)
Q Consensus 431 ~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~-~~~~~~ 509 (1354)
....+.++.++..++..+..++..+.+.|.++|+++||.|+.|+...++..+..++..+.-.+.....+.. ......
T Consensus 168 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (567)
T COG1132 168 --VLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLL 245 (567)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334555677888888888999999999999999999999998775555444333322211111111111 111222
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhhcccc
Q 000680 510 SPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQ 589 (1354)
Q Consensus 510 ~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~~~ 589 (1354)
..+....+.+.+......+.++.+.+.+.+.+...+..|+..+...+..+.++..|.+|+.++++.++...+... ...
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~--~~~ 323 (567)
T COG1132 246 SSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPD--PLK 323 (567)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCC--CCC
Confidence 222222233333333334679999999999999999999999999999999999999999999987543211111 022
Q ss_pred CCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------
Q 000680 590 KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------- 658 (1354)
Q Consensus 590 ~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g----------- 658 (1354)
...+.|+++|++|+|++ ++++|+|+||++++||.+|||||+|||||||+++|+|+++|++|+|.++|
T Consensus 324 ~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~l 401 (567)
T COG1132 324 DTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSL 401 (567)
T ss_pred CCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHH
Confidence 34467999999999985 35799999999999999999999999999999999999999999999987
Q ss_pred --eEEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh
Q 000680 659 --SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 659 --~i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1354)
+||||||+|++|++||+|||.+|.+ .++++..++++.+++++.++.+|+|.+|.+||+|.+||||||||++||||++
T Consensus 402 r~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall 481 (567)
T COG1132 402 RKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALL 481 (567)
T ss_pred HHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHh
Confidence 4999999999999999999999988 5888999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcCchHHHH
Q 000680 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815 (1354)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 815 (1354)
+||+|++||||||+||+++++.|.+.+. ...++||+|+|+|+++.+.+||+|+||++|+|++.|+|+|++++++.|.++
T Consensus 482 ~~~~ILILDEaTSalD~~tE~~I~~~l~-~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l 560 (567)
T COG1132 482 RNPPILILDEATSALDTETEALIQDALK-KLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARL 560 (567)
T ss_pred cCCCEEEEeccccccCHHhHHHHHHHHH-HHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHH
Confidence 9999999999999999999999987665 344788999999999999999999999999999999999999999999988
Q ss_pred HHHh
Q 000680 816 VNAH 819 (1354)
Q Consensus 816 ~~~~ 819 (1354)
...+
T Consensus 561 ~~~~ 564 (567)
T COG1132 561 YQAQ 564 (567)
T ss_pred HHHh
Confidence 7654
No 30
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=2.6e-59 Score=588.85 Aligned_cols=534 Identities=18% Similarity=0.236 Sum_probs=402.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 272 TNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRS 351 (1354)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~ 351 (1354)
++.+++.++...++.++..++..+.|+++..+++....... . ..++...++..++..+......+...++..++|.
T Consensus 14 l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (585)
T TIGR01192 14 LNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD-V---LPTLALWAGFGVFNTIAYVLVAREADRLAHGRRA 89 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777778888888899999999999999886533221 1 1111111112222223222233456678888899
Q ss_pred HHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHH
Q 000680 352 ALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLF---GVVGLGALPGLVLF 427 (1354)
Q Consensus 352 ~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~---~~lG~~~l~gl~v~ 427 (1354)
.+...+|+|.++++....++.++|++++.++.|++.+.++.. .+.......+.+++++++++ +.+++.+++. +
T Consensus 90 ~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~---~ 166 (585)
T TIGR01192 90 TLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVL---G 166 (585)
T ss_pred HHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 899999999999987766677899999999999999886543 33333444444444433333 2333333322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 000680 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREK----EFKWLSEAQLRKAYG 503 (1354)
Q Consensus 428 ~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~----El~~l~~~~~~~~~~ 503 (1354)
.+...+...+.+..++.+++..+..++..+.+.|.++||++||.|+.|+.+.++.++.-++ +.+..+.......+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (585)
T TIGR01192 167 ILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLN 246 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223334456677777778888888899999999999999999999998877666554433 222222211111121
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchh
Q 000680 504 TVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV 583 (1354)
Q Consensus 504 ~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~ 583 (1354)
.++..... +.++.++++... ++.++.+.+++.+.++..+..|+..++..+..+.+++.+++|+.++++.++..++..
T Consensus 247 ~~~~~~~~--~~v~~~g~~~v~-~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~ 323 (585)
T TIGR01192 247 RMASTISM--MCILVIGTVLVI-KGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPA 323 (585)
T ss_pred HHHHHHHH--HHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCc
Confidence 11111111 112223333333 478999999999999999999999999999999999999999999987543221111
Q ss_pred hhccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----
Q 000680 584 RRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----- 658 (1354)
Q Consensus 584 ~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g----- 658 (1354)
+....+...+.++++|++|+|+++ +++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 324 ~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~ 401 (585)
T TIGR01192 324 DAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINT 401 (585)
T ss_pred cCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhh
Confidence 111111223469999999999743 3689999999999999999999999999999999999999999999987
Q ss_pred --------eEEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 000680 659 --------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1354)
Q Consensus 659 --------~i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1354)
.++|+||+|+++++|++|||.++.+ .++++..++++.+++++.+..+|+|.+|.+|++|.+||||||||++
T Consensus 402 ~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~ 481 (585)
T TIGR01192 402 VTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLA 481 (585)
T ss_pred CCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHH
Confidence 4899999999999999999999864 5677788899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcC
Q 000680 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 730 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
||||++++|++++||||||+||+++++.+.+.+. ...+++|+|+|||+++.++.||+|++|++|++++.|+++++.+++
T Consensus 482 lARall~~p~ililDEpts~LD~~~~~~i~~~l~-~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 560 (585)
T TIGR01192 482 IARAILKNAPILVLDEATSALDVETEARVKNAID-ALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKD 560 (585)
T ss_pred HHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHH-HHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCC
Confidence 9999999999999999999999999999876554 445689999999999999999999999999999999999999988
Q ss_pred chHHHHHHH
Q 000680 810 TAFEQLVNA 818 (1354)
Q Consensus 810 ~~~~~~~~~ 818 (1354)
+.|.++...
T Consensus 561 ~~y~~l~~~ 569 (585)
T TIGR01192 561 GRFYKLLRR 569 (585)
T ss_pred ChHHHHHHh
Confidence 888887654
No 31
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-59 Score=551.19 Aligned_cols=527 Identities=23% Similarity=0.301 Sum_probs=408.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 283 AICALLRTIAVVVGPLLLYAFVN-YSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQ 361 (1354)
Q Consensus 283 ~~~~~~~~~~~~~~P~ll~~li~-~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~~~iy~K~ 361 (1354)
.++.++..+....+-.++-..++ .+... ....-+.++++++++.++.+++...--...++.+.++|..+...+++|.
T Consensus 6 ~ll~~l~~i~~i~qa~llA~~l~~l~~~~--~~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l 83 (559)
T COG4988 6 ALLAVLSGIAIIAQAALLADILTKLIEGQ--LFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKL 83 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555544433 22221 1222234455556666677776655556778999999999999999999
Q ss_pred hcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-H---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000680 362 LKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-W---FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPF 437 (1354)
Q Consensus 362 L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~---~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~i~~~l~~~~ 437 (1354)
.++....-+...+|++.++++.-++.+..++. | ....-..|+-+++++++..|.-|.-.+..++.+.+++. .+
T Consensus 84 ~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMi---lv 160 (559)
T COG4988 84 AKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMI---LV 160 (559)
T ss_pred HhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HH
Confidence 99998777778899999999999988776433 2 23333456667777766666655544444444333332 24
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 438 AKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLI----ESRREKEFKWLSEAQLRKAYGTVIYWMSPTI 513 (1354)
Q Consensus 438 ~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i----~~~R~~El~~l~~~~~~~~~~~~~~~~~p~~ 513 (1354)
++..++..+++++....=-..-=+-|+|+.++|.|+-.+..+++| ++.|+.-|+.||-.....+...++...+-
T Consensus 161 g~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsi-- 238 (559)
T COG4988 161 GLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSI-- 238 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 566666666777666666667778889999999999876555544 66888888888765544444434333322
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhh-ccccCCC
Q 000680 514 ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRR-ISLQKSD 592 (1354)
Q Consensus 514 v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~-~~~~~~~ 592 (1354)
...+.+.+..+.+.++++-..+|.++-+---.-.|++.+...+..-.++..+.+.+..|+..+..+...... .....+.
T Consensus 239 AlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~ 318 (559)
T COG4988 239 ALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPP 318 (559)
T ss_pred HHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCC
Confidence 222334555555524889888888888877778899999999999999999999999999887654432211 1122233
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------e
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~ 659 (1354)
..+..+|.+|.|+++ +++++|+||++++|+.++|||+||||||||+++|+|+++|++|+|.++| +
T Consensus 319 ~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~ 396 (559)
T COG4988 319 IEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQ 396 (559)
T ss_pred ceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhH
Confidence 455566999999865 3799999999999999999999999999999999999999999999987 5
Q ss_pred EEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000680 660 IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1354)
Q Consensus 660 i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~ 738 (1354)
++||+|+|.++++|+||||.++++ .+++...++++..++.+.++. |+|-+|.|||+|.+|||||+|||+||||+++++
T Consensus 397 i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~ 475 (559)
T COG4988 397 ISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPA 475 (559)
T ss_pred eeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999987 568899999999999999999 999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcCchHHHHHHH
Q 000680 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818 (1354)
Q Consensus 739 ~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 818 (1354)
++|||||||++||+++++.|.+.+ ....++||+|++||+++.+.++|+|++|++|+++++|+++++.++++.|.+++.+
T Consensus 476 ~l~llDEpTA~LD~etE~~i~~~l-~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~ 554 (559)
T COG4988 476 SLLLLDEPTAHLDAETEQIILQAL-QELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQ 554 (559)
T ss_pred CEEEecCCccCCCHhHHHHHHHHH-HHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHH
Confidence 999999999999999999887654 4555679999999999999999999999999999999999999999999999876
Q ss_pred hh
Q 000680 819 HR 820 (1354)
Q Consensus 819 ~~ 820 (1354)
++
T Consensus 555 q~ 556 (559)
T COG4988 555 QE 556 (559)
T ss_pred Hh
Confidence 43
No 32
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.3e-59 Score=588.08 Aligned_cols=505 Identities=22% Similarity=0.275 Sum_probs=385.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 276 LKENIFIAICALLRTIAVVVGPLLLYAFVNYSN-RGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALM 354 (1354)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~-~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~ 354 (1354)
|+.++...++.++..++..+.|+++..+++... ... ....-+.+++++++..++..++.....+...+++.++...+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 80 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGE-PLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLR 80 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777788888899999999999998652 221 222222233333344444455444445667778888888899
Q ss_pred HHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHH
Q 000680 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLF---GVVGLGALPGLVLFLIC 430 (1354)
Q Consensus 355 ~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~---~~lG~~~l~gl~v~~i~ 430 (1354)
..+|+|.++++....++.++|+++|.++.|++++.++.. .+..+....+.+++++++++ +.+++..+++++++++
T Consensus 81 ~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~- 159 (529)
T TIGR02857 81 ERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPI- 159 (529)
T ss_pred HHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-
Confidence 999999999887666778999999999999999987544 35555555555554444443 4444444433332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 000680 431 GLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKE----FKWLSEAQLRKAYGTVI 506 (1354)
Q Consensus 431 ~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~E----l~~l~~~~~~~~~~~~~ 506 (1354)
+...+.++.++..++.++..+++.+.+.|.++|+++||.|++|+.+.++.++.-++. .+..+..........++
T Consensus 160 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (529)
T TIGR02857 160 --FMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELF 237 (529)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223456777777788888999999999999999999999999998877776544332 22222211111111111
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhhc
Q 000680 507 YWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRI 586 (1354)
Q Consensus 507 ~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~ 586 (1354)
..... +....++++.+. ++.+|.+.+++.+.+...+..|+..+...+..+.+++++.+|+.++++.++.+... ..
T Consensus 238 ~~~~~--~~~~~~~~~~~~-~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~--~~ 312 (529)
T TIGR02857 238 ATLSV--ALVAVYIGFRLL-AGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGK--AP 312 (529)
T ss_pred HHHHH--HHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC--cC
Confidence 11111 111223444444 46899999999999999999999999999999999999999999999754322111 11
Q ss_pred cccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------
Q 000680 587 SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------- 658 (1354)
Q Consensus 587 ~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------- 658 (1354)
......+.|+++|++|+|+++ ++++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 313 ~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~ 391 (529)
T TIGR02857 313 VTAAPAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADA 391 (529)
T ss_pred CCCCCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCH
Confidence 111123479999999999754 35799999999999999999999999999999999999999999999987
Q ss_pred -----eEEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 000680 659 -----SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1354)
Q Consensus 659 -----~i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1354)
+++||+|+|+++++|++|||.++.+ .++++..++++.++++++++.+|+|.+|.+|++|.+||||||||++|||
T Consensus 392 ~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laR 471 (529)
T TIGR02857 392 DSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALAR 471 (529)
T ss_pred HHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHH
Confidence 3999999999999999999999865 5778899999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEE
Q 000680 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVL 791 (1354)
Q Consensus 733 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l 791 (1354)
|++++|++++||||||+||+++++.+++.+. ...+++|+|+|||+++.++.||+|++|
T Consensus 472 al~~~~~ililDE~ts~lD~~~~~~i~~~l~-~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 472 AFLRDAPLLLLDEPTAHLDAETEALVTEALR-ALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHhcCCCEEEEeCcccccCHHHHHHHHHHHH-HhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999999999999987654 445789999999999999999999985
No 33
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=5.3e-59 Score=627.96 Aligned_cols=543 Identities=19% Similarity=0.205 Sum_probs=382.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 273 NVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSA 352 (1354)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~ 352 (1354)
+.+++.+++..++.++..++..+.|+++..+++-+-+.......+..++..+++..++..++.....|...+++.++-..
T Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~ 900 (1466)
T PTZ00265 821 FSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKT 900 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455577777777777788888888888887632221110111222222222222333333222233455677777777
Q ss_pred HHHHHHHHHhcCCcccC--CCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000680 353 LMVAVYQKQLKLSSLGR--KKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1354)
Q Consensus 353 l~~~iy~K~L~ls~~~~--~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~i 429 (1354)
+...+|+|.++.+.... .++++|++++.++.|++.+.++.. .+..+...++.+++++++++. +.|. .+++++.+
T Consensus 901 lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~-~~~~--l~l~~~~~ 977 (1466)
T PTZ00265 901 MKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFY-FCPI--VAAVLTGT 977 (1466)
T ss_pred HHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHH
Confidence 77788888888775433 357899999999999999987543 233333344444444433332 1221 11111111
Q ss_pred HHHHHHHHHHHHHHH-HHHH-----------------HHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHH
Q 000680 430 CGLLNVPFAKILQKC-QSEF-----------------MIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFK 491 (1354)
Q Consensus 430 ~~~l~~~~~~~~~~~-q~~~-----------------~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~ 491 (1354)
...+...+.+..+.. .++. .+..++....++|.++|||+||.|+-|+.+.++..+.-+...+
T Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~ 1057 (1466)
T PTZ00265 978 YFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNK 1057 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 111112222322211 1111 1123344678999999999999999999988877665544333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 492 WLSEAQLRKAYGTVIYWMSPTI-ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRIN 570 (1354)
Q Consensus 492 ~l~~~~~~~~~~~~~~~~~p~~-v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~ 570 (1354)
..++.....+....+..+...+ ..++.+++..++..+.++.+.++.++..+.....++..+...+..+.++++|.+|+.
T Consensus 1058 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~ 1137 (1466)
T PTZ00265 1058 GQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYY 1137 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222222222111111111111 223333343444457899999888877766555678888899999999999999999
Q ss_pred HHhcccC-CCcchhhhcc---ccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCC
Q 000680 571 AFLLDHE-LNNDDVRRIS---LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE 646 (1354)
Q Consensus 571 ~fL~~~e-~~~~~~~~~~---~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~ 646 (1354)
+++..++ .+..+..... +....+.|+++|++|+|+.+++.++|+|+||+|++|+.+|||||+|||||||+++|+|+
T Consensus 1138 ~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ 1217 (1466)
T PTZ00265 1138 PLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRF 1217 (1466)
T ss_pred HHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 9997542 2111111111 11234579999999999865556899999999999999999999999999999999999
Q ss_pred ccC------------------------------------------------------CCcEEEEcC-------------e
Q 000680 647 IPK------------------------------------------------------ISGTVNLYG-------------S 659 (1354)
Q Consensus 647 ~~~------------------------------------------------------~~G~i~~~g-------------~ 659 (1354)
++| ++|+|.++| .
T Consensus 1218 ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~ 1297 (1466)
T PTZ00265 1218 YDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNL 1297 (1466)
T ss_pred CCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhh
Confidence 998 699999988 4
Q ss_pred EEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000680 660 IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1354)
Q Consensus 660 i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~ 738 (1354)
||||+|+|.+|++||||||.+|.+ .++++.+++++.++++++++.||+|.+|.||++|.+|||||||||+||||++++|
T Consensus 1298 i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p 1377 (1466)
T PTZ00265 1298 FSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREP 1377 (1466)
T ss_pred ccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999965 6788899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEcCCcchhhhcCEEEEEeC----CeEE-EecChHHHHh-cCch
Q 000680 739 DIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRILVLEG----GQIT-QSGNYQELLL-AGTA 811 (1354)
Q Consensus 739 ~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~----G~i~-~~g~~~~l~~-~~~~ 811 (1354)
+||||||||||||+++++.|.+.+.... .+++|+|+|||+++.++.||+|++|++ |+++ ++|+|+||++ .++.
T Consensus 1378 ~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~ 1457 (1466)
T PTZ00265 1378 KILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGV 1457 (1466)
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCCh
Confidence 9999999999999999999876654433 368999999999999999999999999 9955 8999999998 4788
Q ss_pred HHHHHHH
Q 000680 812 FEQLVNA 818 (1354)
Q Consensus 812 ~~~~~~~ 818 (1354)
|.++.+.
T Consensus 1458 Y~~l~~~ 1464 (1466)
T PTZ00265 1458 YKKYVKL 1464 (1466)
T ss_pred HHHHHhh
Confidence 8887643
No 34
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.9e-57 Score=620.19 Aligned_cols=471 Identities=17% Similarity=0.193 Sum_probs=358.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000680 344 RSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALP 422 (1354)
Q Consensus 344 ~~~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l~ 422 (1354)
+.+.+.-..+-..+|++.++.+..-.++..+|+|+|.++.|++.+++... .+..+...++.++.++++++..-.+.+++
T Consensus 1031 ~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~ 1110 (1522)
T TIGR00957 1031 IGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVI 1110 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555566677777665555567899999999999999988543 44555566666666655554332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 423 GLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY 502 (1354)
Q Consensus 423 gl~v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~ 502 (1354)
.++++++...+...+.+..+..++.....++...+..+|.++|+++||.|+||+.|.++..+.-+...+...........
T Consensus 1111 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 1190 (1522)
T TIGR00957 1111 IPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRW 1190 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222333333344445555566677788999999999999999999999887766555543332221111111
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcc
Q 000680 503 GT-VIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNND 581 (1354)
Q Consensus 503 ~~-~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~ 581 (1354)
.. .+..+...++ +..+.+.....+.++++.+..++.+...+..|+..+...+..+.++.+|.+|+.+|++.++.++.
T Consensus 1191 ~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~ 1268 (1522)
T TIGR00957 1191 LAVRLECVGNCIV--LFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPW 1268 (1522)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Confidence 11 1111111111 11122223333678999999999999999999999999999999999999999999965432211
Q ss_pred hhhh-cccc--CCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC
Q 000680 582 DVRR-ISLQ--KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG 658 (1354)
Q Consensus 582 ~~~~-~~~~--~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g 658 (1354)
..+. .+++ +.++.|+++|++|+|+++. .++|+|+||+|++||.+||||++|||||||+++|+|+++|++|+|.++|
T Consensus 1269 ~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~-~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG 1347 (1522)
T TIGR00957 1269 QIQETAPPSGWPPRGRVEFRNYCLRYREDL-DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDG 1347 (1522)
T ss_pred cccCCCCCCCCCCCCcEEEEEEEEEeCCCC-cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECC
Confidence 1111 1111 2456899999999998653 4799999999999999999999999999999999999999999999998
Q ss_pred -------------eEEEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -------------~i~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
+|+||||+|.+|++||||||....++++++..++++.|++++.++.+|+|.+|++||+|.+||||||
T Consensus 1348 ~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQr 1427 (1522)
T TIGR00957 1348 LNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQR 1427 (1522)
T ss_pred EEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHH
Confidence 4999999999999999999983336788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l 805 (1354)
||++||||++++|+|+|||||||+||+++.+.|.+. ++...+++|+|+|+|+++.+.++|+|+||++|+|+|.|+|+|+
T Consensus 1428 Qrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~-l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eL 1506 (1522)
T TIGR00957 1428 QLVCLARALLRKTKILVLDEATAAVDLETDNLIQST-IRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNL 1506 (1522)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999887654 4555688999999999999999999999999999999999999
Q ss_pred HhcCchHHHHHHH
Q 000680 806 LLAGTAFEQLVNA 818 (1354)
Q Consensus 806 ~~~~~~~~~~~~~ 818 (1354)
+++++.|.++.++
T Consensus 1507 l~~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1507 LQQRGIFYSMAKD 1519 (1522)
T ss_pred HhCCCHHHHHHHH
Confidence 9988888888754
No 35
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-57 Score=523.68 Aligned_cols=519 Identities=23% Similarity=0.289 Sum_probs=393.6
Q ss_pred HHHHHHHHHHHHHHHHhccCCC-cc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 000680 290 TIAVVVGPLLLYAFVNYSNRGE-EN--LQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSS 366 (1354)
Q Consensus 290 ~~~~~~~P~ll~~li~~~~~~~-~~--~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~~~iy~K~L~ls~ 366 (1354)
-.+....|++.+..++-.++.+ .+ .......+.+.++..+..+++.---.+....+..++-.....-+|+..+.++-
T Consensus 43 K~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~ 122 (591)
T KOG0057|consen 43 KILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDL 122 (591)
T ss_pred hHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4566778999998888765221 11 11122333344455555555443333444556666666777788888888876
Q ss_pred ccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 000680 367 LGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALP-GLVLFLICGLLNVPFAKILQKC 444 (1354)
Q Consensus 367 ~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l~-gl~v~~i~~~l~~~~~~~~~~~ 444 (1354)
....+..+|++.+.|..-...|.++.. .+..+.-..+++.+....++...|++..+ .+..+.....+...+..+-.++
T Consensus 123 ~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~f 202 (591)
T KOG0057|consen 123 SFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRF 202 (591)
T ss_pred HhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHH
Confidence 666667899999999888777777544 23344445577788888899999975432 2223333334444567777889
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHH-HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 000680 445 QSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIE-SRREKEFKWLSEAQLRKA---YGTVIYWMSPTIISSVIFL 520 (1354)
Q Consensus 445 q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~-~~R~~El~~l~~~~~~~~---~~~~~~~~~p~~v~~~~f~ 520 (1354)
+++..++.|+..+.+-+.|.|-.+||.|+=|+.-.++.. .+++.|-..++-.+.... ....++. . ..+.+.|.
T Consensus 203 R~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFs-v--~~~~im~l 279 (591)
T KOG0057|consen 203 RKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFS-V--ALTFIMVL 279 (591)
T ss_pred HHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHH-H--HHHHHHHH
Confidence 999999999999999999999999999999987665553 344444333322222111 1111211 1 12222333
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhhccccCCCCcEEEEee
Q 000680 521 GCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEG 600 (1354)
Q Consensus 521 ~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~ 600 (1354)
+..-.....+|.+.....-+++..|+.|+..|......+.|+.+-.+-....+..++... ....+....++.|+|+|+
T Consensus 280 ~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~--~~~~~i~~~~~~I~F~dV 357 (591)
T KOG0057|consen 280 GSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQ--EAALPIELFGGSIEFDDV 357 (591)
T ss_pred HhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhh--hccCCcccCCCcEEEEee
Confidence 322222357899999999999999999999999999999888877766554333222111 101223334567999999
Q ss_pred EEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEEEeCCC
Q 000680 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTS 667 (1354)
Q Consensus 601 ~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~yv~Q~~ 667 (1354)
+|+|+++ +++|+++||+|++||.+||+|+|||||||++++|+++.+ .+|+|.++| .||||||+.
T Consensus 358 ~f~y~~k--~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~ 434 (591)
T KOG0057|consen 358 HFSYGPK--RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDS 434 (591)
T ss_pred EEEeCCC--CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcc
Confidence 9999864 579999999999999999999999999999999999999 999999998 399999999
Q ss_pred CCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCC
Q 000680 668 WIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1354)
Q Consensus 668 ~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep 746 (1354)
.+||.||.+||.+|.+ ...++..++++..++++-+..+|+|++|.+||+|..|||||||||+||||+..||+|+++|||
T Consensus 435 ~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEa 514 (591)
T KOG0057|consen 435 VLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEA 514 (591)
T ss_pred cccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCc
Confidence 9999999999999987 456777888888999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcCchHHHHHH
Q 000680 747 FSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817 (1354)
Q Consensus 747 ~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 817 (1354)
||+||.++++.|++.+.. ...+||+|+|.|+++.++++|+|+++++|++.+.|+++|++...+.+.++..
T Consensus 515 TS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~ 584 (591)
T KOG0057|consen 515 TSALDSETEREILDMIMD-VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWT 584 (591)
T ss_pred ccccchhhHHHHHHHHHH-hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhc
Confidence 999999999999987654 6789999999999999999999999999999999999999996666666653
No 36
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.2e-56 Score=610.57 Aligned_cols=472 Identities=19% Similarity=0.242 Sum_probs=344.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000680 343 RRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGAL 421 (1354)
Q Consensus 343 ~~~~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l 421 (1354)
.+.+.+.-..+...+|++.++.+..-.++..+|+|+|.++.|++.+++... .+..+....++++.+++++.....+..+
T Consensus 978 ~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~ 1057 (1622)
T PLN03130 978 IMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLW 1057 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566667777777766555678899999999999999987543 4445555555555554443332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 422 PGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKA 501 (1354)
Q Consensus 422 ~gl~v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~ 501 (1354)
+.+++++++..+.....+..++.++..+..+....+..+|.++|+++||.|++|+.|.+...+..+...+..........
T Consensus 1058 ~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 1137 (1622)
T PLN03130 1058 AIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNR 1137 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222233333444444455566677889999999999999999998887766555544332211111111
Q ss_pred HHHHHHHHHHHHHHHHH-HHH-HHHhCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000680 502 YGTVIYWMSPTIISSVI-FLG-CALTGSAPLN-----ASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLL 574 (1354)
Q Consensus 502 ~~~~~~~~~p~~v~~~~-f~~-~~l~~~~~Lt-----~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~ 574 (1354)
+.... ...+..++. +++ +.+..++..+ +..+-.+++....+..++..+......+.++.+|++|+.+|++
T Consensus 1138 wl~~~---l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~ 1214 (1622)
T PLN03130 1138 WLAIR---LETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYID 1214 (1622)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 11000 011111111 111 2122222111 2333334445555666777777777888899999999999997
Q ss_pred ccCCCcchhh-hcccc--CCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCC
Q 000680 575 DHELNNDDVR-RISLQ--KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS 651 (1354)
Q Consensus 575 ~~e~~~~~~~-~~~~~--~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~ 651 (1354)
.++..+...+ ..+++ +.++.|+++|++|+|+++ .+++|+|+||+|++||.+||||++|||||||+++|+|+++|++
T Consensus 1215 ~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~ 1293 (1622)
T PLN03130 1215 LPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER 1293 (1622)
T ss_pred CCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCC
Confidence 5433221111 11111 234689999999999754 3479999999999999999999999999999999999999999
Q ss_pred cEEEEcC-------------eEEEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCC
Q 000680 652 GTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718 (1354)
Q Consensus 652 G~i~~~g-------------~i~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~ 718 (1354)
|+|.++| +|+||||+|.+|++||||||..+.++++++..++++.|++++.++.+|+|.+|+|||+|.
T Consensus 1294 G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~ 1373 (1622)
T PLN03130 1294 GRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGE 1373 (1622)
T ss_pred ceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCC
Confidence 9999998 499999999999999999999988888999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEE
Q 000680 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQ 798 (1354)
Q Consensus 719 ~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~ 798 (1354)
+||||||||++||||++++|+|++||||||+||+++.+.|.+. ++...+++|+|+|+|+++.+.+||+|+||++|+|+|
T Consensus 1374 nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~-I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE 1452 (1622)
T PLN03130 1374 NFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKT-IREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVE 1452 (1622)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999987654 455567899999999999999999999999999999
Q ss_pred ecChHHHHhc-CchHHHHHHHh
Q 000680 799 SGNYQELLLA-GTAFEQLVNAH 819 (1354)
Q Consensus 799 ~g~~~~l~~~-~~~~~~~~~~~ 819 (1354)
.|+|+|++++ ++.|.++.+..
T Consensus 1453 ~Gt~~eLl~~~~g~f~~L~~~~ 1474 (1622)
T PLN03130 1453 FDTPENLLSNEGSAFSKMVQST 1474 (1622)
T ss_pred eCCHHHHHhCCCCHHHHHHHHc
Confidence 9999999987 57888887653
No 37
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.7e-56 Score=605.67 Aligned_cols=470 Identities=19% Similarity=0.242 Sum_probs=342.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000680 344 RSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALP 422 (1354)
Q Consensus 344 ~~~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l~ 422 (1354)
+.+.+.-..+...+|++.++.+..-.++.++|+++|.++.|++.+++... .+..+....++++.+++++.....+..++
T Consensus 976 ~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~ 1055 (1495)
T PLN03232 976 SSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWA 1055 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455566667777665555678899999999999999987544 33344444455555544443332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 423 GLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY 502 (1354)
Q Consensus 423 gl~v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~ 502 (1354)
.+++++++..+.....+..+..++..+..+..-.+..+|.++|+++||.|++|+.|.++.++..+...+..........+
T Consensus 1056 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 1135 (1495)
T PLN03232 1056 IMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRW 1135 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222221112222223333445555666667778899999999999999999998877666555444322111111110
Q ss_pred HHHHHHHHHHHHHHH-HHHH-HHHhCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000680 503 GTVIYWMSPTIISSV-IFLG-CALTGSAPLN-----ASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLD 575 (1354)
Q Consensus 503 ~~~~~~~~p~~v~~~-~f~~-~~l~~~~~Lt-----~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~ 575 (1354)
..... ..+..++ .+++ +.+...+.+. ++.+-.+++....+..|+..+...+..+..+.+|.+||.++++.
T Consensus 1136 l~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~ 1212 (1495)
T PLN03232 1136 LTIRL---ETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDL 1212 (1495)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 00000 0111111 1111 2222212221 22222344555667788999999999999999999999999975
Q ss_pred cCCCcchhhh-cccc--CCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCc
Q 000680 576 HELNNDDVRR-ISLQ--KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISG 652 (1354)
Q Consensus 576 ~e~~~~~~~~-~~~~--~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G 652 (1354)
++..+...+. .+++ +..+.|+++|++|+|+++ .+++|+|+||+|++||.+||||++|||||||+++|+|+++|++|
T Consensus 1213 ~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G 1291 (1495)
T PLN03232 1213 PSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKG 1291 (1495)
T ss_pred CccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCc
Confidence 4322111111 1111 234679999999999754 35799999999999999999999999999999999999999999
Q ss_pred EEEEcC-------------eEEEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCC
Q 000680 653 TVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1354)
Q Consensus 653 ~i~~~g-------------~i~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~ 719 (1354)
+|.++| +|+||||+|.+|++||||||..+.++++++..++++.|++++.++.+|+|.+|++|++|.+
T Consensus 1292 ~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~ 1371 (1495)
T PLN03232 1292 RIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGEN 1371 (1495)
T ss_pred eEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCC
Confidence 999998 4999999999999999999999888889999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEe
Q 000680 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1354)
Q Consensus 720 LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1354)
||||||||++||||++++|+|++||||||+||+++.+.|.+. ++...+++|+|+|||+++.+.++|+|+||++|+|+|.
T Consensus 1372 LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~-L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~ 1450 (1495)
T PLN03232 1372 FSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRT-IREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEY 1450 (1495)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHH-HHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999987654 4555678999999999999999999999999999999
Q ss_pred cChHHHHhcCc-hHHHHHHH
Q 000680 800 GNYQELLLAGT-AFEQLVNA 818 (1354)
Q Consensus 800 g~~~~l~~~~~-~~~~~~~~ 818 (1354)
|+|+|++++++ .|.++.+.
T Consensus 1451 Gt~~eLl~~~~~~f~~l~~~ 1470 (1495)
T PLN03232 1451 DSPQELLSRDTSAFFRMVHS 1470 (1495)
T ss_pred CCHHHHHhCCCCHHHHHHHH
Confidence 99999998764 78888754
No 38
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-55 Score=508.67 Aligned_cols=473 Identities=23% Similarity=0.349 Sum_probs=355.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--HHHHh
Q 000680 340 FGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVL--FGVVG 417 (1354)
Q Consensus 340 ~~~~~~~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~~~~~w~~plqi~~~~~~L--~~~lG 417 (1354)
..+.....|+-+.+.-.+|+|....+.........|++.|.+..|++.++++.......|...+-++.+..+. |.-++
T Consensus 80 lvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~ 159 (573)
T COG4987 80 LVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIP 159 (573)
T ss_pred HhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 3455566788888889999999999988777889999999999999999998777766666554443333332 44455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 418 LGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQ 497 (1354)
Q Consensus 418 ~~~l~gl~v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~ 497 (1354)
.+.+.|+...+..+.+...+.+.-++..++..+.+..=-+-..+.+.|....+++|-++.|.+.++..-+.=.+.-+|.+
T Consensus 160 ~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~ 239 (573)
T COG4987 160 LALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQA 239 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666665555555555556666666666666666666667889999999999999999987776543322222222222
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000680 498 LRKAYGTVIYW-MSPTIISSVIFLGCALTGSAPLNA-STIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLD 575 (1354)
Q Consensus 498 ~~~~~~~~~~~-~~p~~v~~~~f~~~~l~~~~~Lt~-~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~ 575 (1354)
.......++.. ..-.+++...+......+.+..+. ..+...+..|..+..-...-|.++...-|+..|.+|+.+.+.+
T Consensus 240 ~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q 319 (573)
T COG4987 240 RFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQ 319 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccC
Confidence 22222222211 122222212222222223234442 2222222222222211112236777888999999999998876
Q ss_pred cCCCcchhhhccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEE
Q 000680 576 HELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655 (1354)
Q Consensus 576 ~e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~ 655 (1354)
++....+ +... +..+..++++|++|+|+++ +.++|+|+||++++||.+||+|++|||||||++.|.|-++|++|+|.
T Consensus 320 ~~e~~~~-~~~~-~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~ 396 (573)
T COG4987 320 KPEVTFP-DEQT-ATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSIT 396 (573)
T ss_pred CcccCCC-cccc-CCccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeee
Confidence 5433211 1111 1122279999999999976 46899999999999999999999999999999999999999999999
Q ss_pred EcC-------------eEEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCC
Q 000680 656 LYG-------------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1354)
Q Consensus 656 ~~g-------------~i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LS 721 (1354)
.+| .+++++|.+.+|++|+|||+..+++ ..+|...+++++.+|++-++..|+|.+|.+||.|..||
T Consensus 397 ~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LS 476 (573)
T COG4987 397 LNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLS 476 (573)
T ss_pred ECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCC
Confidence 988 4899999999999999999999987 46788999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecC
Q 000680 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1354)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 801 (1354)
||||||++|||++.+|+++++|||||.|||+.+++++.+.+. ...+|||+|+|||++..++++|+|++|++|+++++|+
T Consensus 477 GGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~-~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~ 555 (573)
T COG4987 477 GGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLF-EHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGT 555 (573)
T ss_pred chHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHH-HHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCC
Confidence 999999999999999999999999999999999999987654 4457999999999999999999999999999999999
Q ss_pred hHHHHhcCchHHHHH
Q 000680 802 YQELLLAGTAFEQLV 816 (1354)
Q Consensus 802 ~~~l~~~~~~~~~~~ 816 (1354)
|++++.+++.|.++.
T Consensus 556 ~~~Ll~~~g~~~~l~ 570 (573)
T COG4987 556 HAELLANNGRYKRLY 570 (573)
T ss_pred HHhhhccccHHHHHh
Confidence 999999888887764
No 39
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=3.2e-55 Score=596.19 Aligned_cols=465 Identities=15% Similarity=0.173 Sum_probs=348.9
Q ss_pred HHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000680 352 ALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLIC 430 (1354)
Q Consensus 352 ~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~i~ 430 (1354)
.+-..+|++.++.+..-.++..+|+|+|.++.|++.+.+.+. .+..+....+.++.++++++....+..++.++++++.
T Consensus 1032 ~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i~~~~~~ 1111 (1560)
T PTZ00243 1032 NMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALVPCGYLY 1111 (1560)
T ss_pred HHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666777777666555677899999999999999988544 3445555556665555554433322222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 000680 431 GLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGT-VIYWM 509 (1354)
Q Consensus 431 ~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~-~~~~~ 509 (1354)
..+...+.+..+..++.....++.-.+..+|.++|+++||.|++|+.|.++..+.-+...+...+......... ..-..
T Consensus 1112 ~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l 1191 (1560)
T PTZ00243 1112 YRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFL 1191 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333344455555666666777778999999999999999999998877764443333221111111111111 11111
Q ss_pred HHHHHHHH-HHHHH-HHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc-ch----
Q 000680 510 SPTIISSV-IFLGC-ALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNN-DD---- 582 (1354)
Q Consensus 510 ~p~~v~~~-~f~~~-~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~-~~---- 582 (1354)
...++.++ .++.+ ++.+...++++.+..++.+...+..|+..+...+..+.++.+|++|+.+|++..+.++ ..
T Consensus 1192 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~ 1271 (1560)
T PTZ00243 1192 SNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEE 1271 (1560)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccc
Confidence 11111111 11222 1223345788887777777788889999999999999999999999999995321110 00
Q ss_pred -------------------hhhc-c-----ccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHH
Q 000680 583 -------------------VRRI-S-----LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKS 637 (1354)
Q Consensus 583 -------------------~~~~-~-----~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKS 637 (1354)
.+.. + .....+.|+|+|++|+|+++ ..++|+|+||+|++||.+||||++|||||
T Consensus 1272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vsf~I~~GekVaIVGrTGSGKS 1350 (1560)
T PTZ00243 1272 VDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGVSFRIAPREKVGIVGRTGSGKS 1350 (1560)
T ss_pred ccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecceEEECCCCEEEEECCCCCCHH
Confidence 0000 0 01123579999999999764 34699999999999999999999999999
Q ss_pred HHHHHHhCCccCCCcEEEEcC-------------eEEEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhc
Q 000680 638 SLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINN 704 (1354)
Q Consensus 638 tLl~~i~g~~~~~~G~i~~~g-------------~i~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~ 704 (1354)
||+++|+|+++|++|+|.++| +|+||||+|.+|++||||||..+..+++++..++++.|++++.++.
T Consensus 1351 TLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~ 1430 (1560)
T PTZ00243 1351 TLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVAS 1430 (1560)
T ss_pred HHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhh
Confidence 999999999999999999998 4999999999999999999988777888999999999999999999
Q ss_pred CCCCCcccccCCCCCCChHHHHHHHHHHHHhcC-CCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhh
Q 000680 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND-ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS 783 (1354)
Q Consensus 705 l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~-~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~ 783 (1354)
+|+|.+|.+|++|.+||||||||++||||++++ |+|+|||||||+||+++.+.|.+. +....+++|+|+|+|+++.+.
T Consensus 1431 lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~-L~~~~~~~TvI~IAHRl~ti~ 1509 (1560)
T PTZ00243 1431 ESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQAT-VMSAFSAYTVITIAHRLHTVA 1509 (1560)
T ss_pred CcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHH-HHHHCCCCEEEEEeccHHHHH
Confidence 999999999999999999999999999999996 899999999999999999998654 455567899999999999999
Q ss_pred hcCEEEEEeCCeEEEecChHHHHhc-CchHHHHHHH
Q 000680 784 EVDRILVLEGGQITQSGNYQELLLA-GTAFEQLVNA 818 (1354)
Q Consensus 784 ~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 818 (1354)
++|+|+||++|+|++.|+++|++++ ++.|.++.+.
T Consensus 1510 ~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~ 1545 (1560)
T PTZ00243 1510 QYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEA 1545 (1560)
T ss_pred hCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHH
Confidence 9999999999999999999999974 6788888754
No 40
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=2.3e-56 Score=556.83 Aligned_cols=441 Identities=24% Similarity=0.340 Sum_probs=382.8
Q ss_pred HHHHHHHHHHhHHHHHHhhhcC----CCCcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000680 908 AQSGFVGLQAAATYWLAYAIQI----PKITSGIL-IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAP 982 (1354)
Q Consensus 908 ~~~~~~~~~~~~~~wl~~~~~~----~~~~~~~~-~~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p 982 (1354)
..+..+.+.++.++.....+|. .......+ ..+++++++...++.++|.+...+.+.+....+-.++++|+++.|
T Consensus 162 ~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lp 241 (709)
T COG2274 162 ASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLP 241 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCc
Confidence 3334445556666666555543 11222222 334555667788899999999999999999999999999999999
Q ss_pred CccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 983 MLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATAREL 1062 (1354)
Q Consensus 983 ~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l~~l~~~~~~~~i~~~y~~~sr~l 1062 (1354)
++||+++++|++++|++ |++.|...+...+...+..++..+..+++|++.+|+++++++..++++..+.....+..|+.
T Consensus 242 l~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~ 320 (709)
T COG2274 242 LSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRK 320 (709)
T ss_pred HHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999996 77888888888877777777778888899999999999998888888877777777777777
Q ss_pred HHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 000680 1063 IRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAAL-FLV 1141 (1354)
Q Consensus 1063 ~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~-~~v 1141 (1354)
.+...+..+...++..|++.|+.|||+.+.|+++..++++..+++.+..+.......+......++..+..+.+.. .+.
T Consensus 321 ~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~ 400 (709)
T COG2274 321 TRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAI 400 (709)
T ss_pred HHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777778888899999999999999999999999999999999999999999999889888888887775544443 456
Q ss_pred HhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEE
Q 000680 1142 LIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQL 1221 (1354)
Q Consensus 1142 l~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nV 1221 (1354)
++..|.+|.|.+.++.+.+..+++|+..+++.+++++....+.||+.++++.|+|.+. ++.+...|+.+|+|+|+||
T Consensus 401 lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~---~~~~~~~~~~~g~I~~~nv 477 (709)
T COG2274 401 LVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEG---DKTLIHLPKLQGEIEFENV 477 (709)
T ss_pred HHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---ccccccccccCceEEEEEE
Confidence 7789999999999999999999999999999999999999999999999999998643 2224455678899999999
Q ss_pred EEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceeccccc
Q 000680 1222 KIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPT 1301 (1354)
Q Consensus 1222 sf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~ 1301 (1354)
+|+|+++.|++|+|+|++|+|||+|||||+||||||||+++|.|+|+|++|+|++||+|++++++++||++|++||||++
T Consensus 478 sf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~ 557 (709)
T COG2274 478 SFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPF 557 (709)
T ss_pred EEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccch
Confidence 99999988899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1302 LFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1302 LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
||+|||||||.-.+ +.+||||++||+.|++||||+++|.|||| +|.|+|-|
T Consensus 558 Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGG 613 (709)
T COG2274 558 LFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGG 613 (709)
T ss_pred hhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHH
Confidence 99999999996333 46899999999999999999999999999 58888854
No 41
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.3e-54 Score=494.48 Aligned_cols=527 Identities=22% Similarity=0.297 Sum_probs=412.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 267 VRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSG 346 (1354)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 346 (1354)
...+....+++.++..+++..+-.++..+.|+.+-..-+-+- +..+...-..+.+.....++++.++..--.+...|+|
T Consensus 13 ~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL-~S~s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig 91 (580)
T COG4618 13 LLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVL-PSRSVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIG 91 (580)
T ss_pred hhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhc-cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556667777888888888888888999987655443221 1122223334444444455556665544456678999
Q ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH------HHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000680 347 MRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF------WFHLTWSLALQLFLAIGVLFGVVGLGA 420 (1354)
Q Consensus 347 ~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~------~~~~~w~~plqi~~~~~~L~~~lG~~~ 420 (1354)
.++-..|..-||.-+++.....+......+.. .|.+.+..|.. ++...| .|+=++++ +++.-.+|+.+
T Consensus 92 ~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW-~P~yl~v~-fl~Hp~lG~~a 165 (580)
T COG4618 92 ERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPW-MPLYLAVI-FLFHPWLGLIA 165 (580)
T ss_pred HHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCch-HHHHHHHH-HHHHHHHHHHH
Confidence 99999999999998864433222222223333 36666665543 344455 46644443 45667899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 421 LPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRK 500 (1354)
Q Consensus 421 l~gl~v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~ 500 (1354)
++|.++++.+..+|- +..++--++..+..-+|....+-.+.|..+|+.+|..+...++..+...+-++...+.+-..
T Consensus 166 ~~ga~iLv~la~ln~---~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~ 242 (580)
T COG4618 166 LAGAIILVVLALLNE---RATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRN 242 (580)
T ss_pred HHHHHHHHHHHHHHH---HHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999988888777763 44555566777888899999999999999999999999999999998888887766655443
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 000680 501 AY-GTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELN 579 (1354)
Q Consensus 501 ~~-~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~ 579 (1354)
.. +...-.+--.+-+.+.=.+.+++-++.+|++.++.+--+..-.-.|+...-..+.++..|+.|.+|++++|......
T Consensus 243 ~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~ 322 (580)
T COG4618 243 GAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAA 322 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 22 22111111111222222233344447899999998877777777899999999999999999999999999754322
Q ss_pred cchhhhccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-
Q 000680 580 NDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG- 658 (1354)
Q Consensus 580 ~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g- 658 (1354)
.++.+.+.+++.+.++++++.=+ ...+|+++|+||++++||-++|+||+|||||||.++|.|..+|.+|.|+++|
T Consensus 323 ---~~~m~LP~P~g~L~Ve~l~~~PP-g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga 398 (580)
T COG4618 323 ---AERMPLPAPQGALSVERLTAAPP-GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGA 398 (580)
T ss_pred ---cCCCCCCCCCceeeEeeeeecCC-CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecch
Confidence 23455667788999999999654 4568999999999999999999999999999999999999999999999998
Q ss_pred ------------eEEEEeCCCCCCCCcHHHHHh-cCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 ------------SIAYVSQTSWIQSGSIRDNIL-YGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 ------------~i~yv~Q~~~~~~~ti~eni~-~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
+|||.||+--+|.+||.|||. |+.+.|.++.-++.+..+.++-+-.+|+|++|.||+.|.+||||||
T Consensus 399 ~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQR 478 (580)
T COG4618 399 DLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQR 478 (580)
T ss_pred hhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHH
Confidence 599999999999999999997 7777888888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l 805 (1354)
|||+||||+|.||.+++||||-|+||.+.++.+.+-+.....+|.|+|+|||+++.+..+|+|++|+||++...|+.+|+
T Consensus 479 QRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eV 558 (580)
T COG4618 479 QRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEV 558 (580)
T ss_pred HHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHH
Confidence 99999999999999999999999999999999988777777889999999999999999999999999999999999998
Q ss_pred Hh
Q 000680 806 LL 807 (1354)
Q Consensus 806 ~~ 807 (1354)
++
T Consensus 559 La 560 (580)
T COG4618 559 LA 560 (580)
T ss_pred HH
Confidence 75
No 42
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=3.7e-54 Score=539.41 Aligned_cols=510 Identities=17% Similarity=0.146 Sum_probs=363.6
Q ss_pred HHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 271 ITN-VYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1354)
Q Consensus 271 l~~-~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ri 349 (1354)
+++ .+++.+++..++.++..++..+.|.++..+++...... . ....+..++++. ..++..-..+...+.+.++
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~-~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 84 (555)
T TIGR01194 11 LLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLG-Q--GSLFSFGGLCLL---ALLFRIGADIFPAYAGMHI 84 (555)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-c--hHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 455 67777888888888888888999998887765211010 0 111111122221 1222222233456778888
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000680 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1354)
Q Consensus 350 r~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~i 429 (1354)
...+...+|+|.++++.....+.++|+++|.++.|++.+.++...+..+....+.++++++++++.-...+++.++++.+
T Consensus 85 ~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~ 164 (555)
T TIGR01194 85 IANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAIII 164 (555)
T ss_pred HHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 88888899999999887655667899999999999999998765444444444444444444433221112222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHH--HHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 000680 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEE--KFKSLI----ESRREKEFKWLSEAQLRKAYG 503 (1354)
Q Consensus 430 ~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~--~f~~~i----~~~R~~El~~l~~~~~~~~~~ 503 (1354)
.+.+..+..++.++...+..+..++..+...|.++|+++||.|+.|+ ...++. ++.|+...+..+.. ....
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 241 (555)
T TIGR01194 165 GTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIF---IAAE 241 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHHH
Confidence 22223334555666677777788889999999999999999999854 223333 33333222211111 0011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcch-
Q 000680 504 TVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDD- 582 (1354)
Q Consensus 504 ~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~- 582 (1354)
.+........+.++.+.+. .. +.+|.+.+++.+.+...+..|+..+...+..+.++++|.+||.++++.++.++..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~--~~-~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~ 318 (555)
T TIGR01194 242 NFGQLLFFLLIGCALFAAA--MF-ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPEL 318 (555)
T ss_pred HHHHHHHHHHHHHHHHHHH--Hh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 1111111111111111111 11 4789999888888899999999999999999999999999999998532111000
Q ss_pred --hhhc-----cccCCCCcEEEEeeEEEeCCCC--CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcE
Q 000680 583 --VRRI-----SLQKSDRSVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653 (1354)
Q Consensus 583 --~~~~-----~~~~~~~~i~~~~~~f~~~~~~--~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~ 653 (1354)
.+.. +.......|+++|++|+|++++ .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~ 398 (555)
T TIGR01194 319 ELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGE 398 (555)
T ss_pred cccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 0000 1112235799999999997532 236999999999999999999999999999999999999999999
Q ss_pred EEEcC-------------eEEEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCC
Q 000680 654 VNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1354)
Q Consensus 654 i~~~g-------------~i~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~L 720 (1354)
|.++| .++|++|+|+++++|+++|+ ....++++..++++.++++++++.+|+|++|. .+|
T Consensus 399 i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~L 471 (555)
T TIGR01194 399 ILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TAL 471 (555)
T ss_pred EEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCCc-----ccC
Confidence 99987 38999999999999999995 23356777889999999999999999999884 789
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHH-hcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEe
Q 000680 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA-ALEKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1354)
Q Consensus 721 SgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~-~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1354)
|||||||++||||++++|+++|||||||+||+++++.+.+.+.+. ..+++|+|+|||+++.+..||+|++|++|++++.
T Consensus 472 SgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 472 STGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999998776543 3468999999999999999999999999999864
No 43
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=4.8e-55 Score=546.80 Aligned_cols=406 Identities=21% Similarity=0.240 Sum_probs=341.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHH
Q 000680 944 VSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTEL 1023 (1354)
Q Consensus 944 l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~ 1023 (1354)
+.++..++.++..++....+.+...++|.++++++++.|.+||++.++|++++|+++|++.++..+...+..++..++.+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~ 141 (529)
T TIGR02868 62 FGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVG 141 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888888899999999999999999999999999999999999999999999999998888888888888
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHH
Q 000680 1024 LAIIGIMTFVTWQVLVVAIFAMVAVRFVQ-RYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLK 1102 (1354)
Q Consensus 1024 i~~i~v~~~~~~~l~l~~l~~~~~~~~i~-~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~ 1102 (1354)
++.++++++.+|.++++++..++++.++. .++.+..++..+...+..+...+++.|+++|+++||+|+.|+++.+++.+
T Consensus 142 ~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~ 221 (529)
T TIGR02868 142 SAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEA 221 (529)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHH
Confidence 88999999999999887776655554443 44445556666666677788999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000680 1103 LVDIDASLFFHTNGVMEWLILRVEALQNLTLFTA-ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYI 1181 (1354)
Q Consensus 1103 ~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~-~~~~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~ 1181 (1354)
..++..+..........+......++..+..+.+ .+....+..|.++.|.+..++.|+..+..++..+...+.+++...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 301 (529)
T TIGR02868 222 ADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVR 301 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777766665555554444444443332222 223344568899999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHH
Q 000680 1182 ISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLIS 1261 (1354)
Q Consensus 1182 ~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~ 1261 (1354)
.+.+|+.++++.++|.+.. +...+...+|..++|+|+||+|+|+++. ++|+|+||+|+|||+|||||+||||||||++
T Consensus 302 ~~~~ri~~~l~~~~~~~~~-~~~~~~~~~~~~~~I~~~~vsf~Y~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~ 379 (529)
T TIGR02868 302 AAAERIEEVTGAKGPRPEG-VVPAAGALGLGKPTLELRDLSFGYPGSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLM 379 (529)
T ss_pred HHHHHHHHHhcCCCCcCCC-CCCCCcccCCCCceEEEEEEEEecCCCC-ceeecceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 9999999999877653321 1111112334567899999999997544 5999999999999999999999999999999
Q ss_pred HHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCC
Q 000680 1262 ALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPN 1340 (1354)
Q Consensus 1262 lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~ 1340 (1354)
+|.|+|+|++|+|++||+||+++ .+++|++|++|||||+||+|||||||...+ +++|||+++|++.|+++|+|++||+
T Consensus 380 lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~ 458 (529)
T TIGR02868 380 LLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPD 458 (529)
T ss_pred HHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcc
Confidence 99999999999999999999999 999999999999999999999999998643 5799999999999999999999999
Q ss_pred CcCC----CCcccccc
Q 000680 1341 KLDS----SGKLFSAA 1352 (1354)
Q Consensus 1341 gldt----~G~n~s~~ 1352 (1354)
|||| .|.|+|-|
T Consensus 459 GldT~ige~G~~LSGG 474 (529)
T TIGR02868 459 GLDTVLGEGGARLSGG 474 (529)
T ss_pred cccchhccccCcCCHH
Confidence 9999 37888865
No 44
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.6e-56 Score=496.27 Aligned_cols=456 Identities=22% Similarity=0.344 Sum_probs=339.7
Q ss_pred HHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---H
Q 000680 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWF-HLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI---C 430 (1354)
Q Consensus 355 ~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~~-~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~i---~ 430 (1354)
..+|++...+|-.-.-...+||+...|..-.+.+. +..++ ..+--..+.++++++ |..+-.-...|++|++. .
T Consensus 296 ~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~v--YF~~~Fn~wFgLIVfl~m~lY 372 (790)
T KOG0056|consen 296 TELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMV--YFFIKFNIWFGLIVFLMMLLY 372 (790)
T ss_pred HHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhh--hhhhhHhHHHHHHHHHHHHHH
Confidence 34555555554332223457888877765444433 22221 222222244455544 33333334455554433 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 431 GLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEK----FKSLIESRREKEFKWLSEAQLRKAYGTVI 506 (1354)
Q Consensus 431 ~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~----f~~~i~~~R~~El~~l~~~~~~~~~~~~~ 506 (1354)
..+...+...-.++|++....-.+--....+.|-+..+||.|+.|+. +.+.|....+.|-+.+..-.+++.....+
T Consensus 373 ~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~I 452 (790)
T KOG0056|consen 373 CYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGI 452 (790)
T ss_pred hheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 22233344555667776654444444455677788999999999864 44555556666655544443443333322
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhhc
Q 000680 507 YWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRI 586 (1354)
Q Consensus 507 ~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~ 586 (1354)
...+ +.....+.+|... .+.+|.+...-.....-.|..|++.+......+....+-.+|+.+.+++++.-.+.....
T Consensus 453 i~lg--ll~gsll~aY~Vt-~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~ 529 (790)
T KOG0056|consen 453 IGLG--LLAGSLLCAYRVT-EQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAP 529 (790)
T ss_pred hhhH--Hhhhhheeeeeee-eccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCC
Confidence 2221 1222233444444 478999987777777888999999999999999999999999999987654221111112
Q ss_pred cccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------
Q 000680 587 SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------- 658 (1354)
Q Consensus 587 ~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------- 658 (1354)
+.....+.|+++|++|+|+++ +|+|+||||++++|+.+|+|||+|+||||+++.+.++++.++|+|.++|
T Consensus 530 pl~~~~G~i~fsnvtF~Y~p~--k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~ 607 (790)
T KOG0056|consen 530 PLKVTQGKIEFSNVTFAYDPG--KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQ 607 (790)
T ss_pred CccccCCeEEEEEeEEecCCC--CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHH
Confidence 223356789999999999875 6899999999999999999999999999999999999999999999998
Q ss_pred -----eEEEEeCCCCCCCCcHHHHHhcCCCC-CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 000680 659 -----SIAYVSQTSWIQSGSIRDNILYGKPM-DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1354)
Q Consensus 659 -----~i~yv~Q~~~~~~~ti~eni~~g~~~-~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1354)
+||.|||+..+||.||..||.++++- ..|...++.+++++++.+-.+|+|+.|.+||||..|||||||||++||
T Consensus 608 ~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiAR 687 (790)
T KOG0056|consen 608 SSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIAR 687 (790)
T ss_pred HHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHH
Confidence 49999999999999999999999873 456677788999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhc-Cch
Q 000680 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA-GTA 811 (1354)
Q Consensus 733 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~ 811 (1354)
++..+|.|++|||.|||||.++++.| +.++.....++|.|+|.|+++.+-+||.|++++||+|+|.|+++|++.+ ++.
T Consensus 688 tiLK~P~iIlLDEATSALDT~tER~I-QaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~ 766 (790)
T KOG0056|consen 688 TILKAPSIILLDEATSALDTNTERAI-QAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGA 766 (790)
T ss_pred HHhcCCcEEEEcchhhhcCCccHHHH-HHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCc
Confidence 99999999999999999999999997 4566677789999999999999999999999999999999999999987 778
Q ss_pred HHHHHHHh
Q 000680 812 FEQLVNAH 819 (1354)
Q Consensus 812 ~~~~~~~~ 819 (1354)
|+++.+.+
T Consensus 767 Ya~MWq~q 774 (790)
T KOG0056|consen 767 YADMWQAQ 774 (790)
T ss_pred HHHHHHHH
Confidence 88887544
No 45
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=3.4e-53 Score=576.60 Aligned_cols=471 Identities=19% Similarity=0.191 Sum_probs=349.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000680 344 RSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALP 422 (1354)
Q Consensus 344 ~~~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l~ 422 (1354)
+.+.+.-..+...++++.++.+..-.++..+|+|+|.++.|++.+.+... .+..+....+.+++++++++...++.+++
T Consensus 951 ~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~ 1030 (1490)
T TIGR01271 951 HTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIA 1030 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555566666666655444567899999999999999987543 44455555556666655555444443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000680 423 GLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLR-KA 501 (1354)
Q Consensus 423 gl~v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~-~~ 501 (1354)
.+++++++..+...+.+..+..++.....+....+..+|.++|+.+||.|+||+.|.++..+.-+...+........ ..
T Consensus 1031 ~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 1110 (1490)
T TIGR01271 1031 AIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRW 1110 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444455566666777788889999999999999999999998877766544322111111000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcc
Q 000680 502 YGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNND 581 (1354)
Q Consensus 502 ~~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~ 581 (1354)
+...+....-.++..+.+.. ++....+++.+-.++++...+..++..+...+..+..+.+|.+||.+|++.++..+.
T Consensus 1111 l~~~~~~i~~~~~~~~~~l~---~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~ 1187 (1490)
T TIGR01271 1111 FQMRIDIIFVFFFIAVTFIA---IGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPR 1187 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 11001000111111111111 111223455555566666667778888888888999999999999999865432211
Q ss_pred hhh--------------h-ccc--cCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHh
Q 000680 582 DVR--------------R-ISL--QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL 644 (1354)
Q Consensus 582 ~~~--------------~-~~~--~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~ 644 (1354)
..+ . .++ .+..+.|+++|++|+|+++ .+++|+|+||+|++||.++|||++|||||||+++|+
T Consensus 1188 ~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~ 1266 (1490)
T TIGR01271 1188 PSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALL 1266 (1490)
T ss_pred ccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 000 0 000 1234679999999999864 467999999999999999999999999999999999
Q ss_pred CCccCCCcEEEEcC-------------eEEEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcc
Q 000680 645 GEIPKISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLT 711 (1354)
Q Consensus 645 g~~~~~~G~i~~~g-------------~i~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t 711 (1354)
|+++ .+|+|.++| +++|+||+|.+|++||||||.....+++++..++++.|++.+.++.+|+|.+|
T Consensus 1267 rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt 1345 (1490)
T TIGR01271 1267 RLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDF 1345 (1490)
T ss_pred hhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCcccccc
Confidence 9997 799999988 49999999999999999999876678899999999999999999999999999
Q ss_pred cccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEE
Q 000680 712 EIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVL 791 (1354)
Q Consensus 712 ~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l 791 (1354)
.||++|.+||||||||++||||++++|+|+|||||||+||+++.+.|.+.+ +...+++|+|+|||+++.+..+|+|++|
T Consensus 1346 ~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L-~~~~~~~TvI~IaHRl~ti~~~DrIlvL 1424 (1490)
T TIGR01271 1346 VLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTL-KQSFSNCTVILSEHRVEALLECQQFLVI 1424 (1490)
T ss_pred ccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHH-HHHcCCCEEEEEecCHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999886654 4556789999999999999999999999
Q ss_pred eCCeEEEecChHHHHhcCchHHHHHHHhh
Q 000680 792 EGGQITQSGNYQELLLAGTAFEQLVNAHR 820 (1354)
Q Consensus 792 ~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 820 (1354)
++|+|++.|++++++++++.|.++.++..
T Consensus 1425 ~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1425 EGSSVKQYDSIQKLLNETSLFKQAMSAAD 1453 (1490)
T ss_pred ECCEEEEeCCHHHHHcCCcHHHHHHHHhC
Confidence 99999999999999987788988876543
No 46
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=5.4e-54 Score=541.04 Aligned_cols=438 Identities=23% Similarity=0.334 Sum_probs=360.2
Q ss_pred HHHHHHHHHhHHHHHHhhhcCCC--C-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 000680 909 QSGFVGLQAAATYWLAYAIQIPK--I-TSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLF 985 (1354)
Q Consensus 909 ~~~~~~~~~~~~~wl~~~~~~~~--~-~~~~~~~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~f 985 (1354)
..+...+....++++...++... . ....+...++++.++..++.++..+...+.+.+...++|.++++++++.|++|
T Consensus 23 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~ 102 (567)
T COG1132 23 LLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSF 102 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 33344455555665554443211 1 11123334444555667777777888888889999999999999999999999
Q ss_pred ccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 986 FDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRI 1065 (1354)
Q Consensus 986 Fd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l~~l~~~~~~~~i~~~y~~~sr~l~rl 1065 (1354)
|+++++|++++|+++|++.++..+......+...++.+++.+++++..+|.+.++.+...+++.+...++.+..++..+.
T Consensus 103 ~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (567)
T COG1132 103 FDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRR 182 (567)
T ss_pred hCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988866666678888889999999999999888887777777777777777888888
Q ss_pred HhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhc
Q 000680 1066 NGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAA-LFLVLIP 1144 (1354)
Q Consensus 1066 ~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~-~~~vl~~ 1144 (1354)
.....+.+.+.+.|+++|+++||+|+.++...+++.+..+...+...........+.....++..+....+. +....+.
T Consensus 183 ~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (567)
T COG1132 183 VREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVL 262 (567)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999888888877766666544444444444333444433332222 2233456
Q ss_pred CCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEE
Q 000680 1145 RGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIR 1224 (1354)
Q Consensus 1145 ~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~ 1224 (1354)
.+.++.|.+..++.|...+..++..+...+..++....|.||+.++++.+++... ...+ .++..|+|+|+||+|+
T Consensus 263 ~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~--~~~~~~~I~f~~vsf~ 337 (567)
T COG1132 263 SGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED---PPDP--LKDTIGSIEFENVSFS 337 (567)
T ss_pred cCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CCCC--CCCCCCeEEEEEEEEE
Confidence 7789999999999999999999999999999999999999999999987665321 1111 3346689999999999
Q ss_pred eCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccccccc
Q 000680 1225 YRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFR 1304 (1354)
Q Consensus 1225 Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~ 1304 (1354)
|+++ ++||+|+||+|+|||++|||||||||||||+++|+|+|||++|+|+|||+||+++++++||++|++|||||+||+
T Consensus 338 y~~~-~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~ 416 (567)
T COG1132 338 YPGK-KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS 416 (567)
T ss_pred cCCC-CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeec
Confidence 9764 459999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhcCCCCC-CCHHHHHHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1305 GSVRTNLDPLGL-YSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1305 GTIR~NLdp~~~-~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
||||+||+++.+ +||||+++|+++|+++|||+++|+|||| .|.|+|.|
T Consensus 417 ~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgG 469 (567)
T COG1132 417 GTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGG 469 (567)
T ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHH
Confidence 999999998765 7999999999999999999999999999 47888865
No 47
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=4.2e-54 Score=552.68 Aligned_cols=460 Identities=21% Similarity=0.246 Sum_probs=370.3
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHHHhhhcCC--CCc-c--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 887 KPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIP--KIT-S--GILIGVYAGVSTASAVFVYFRSFFAAH 961 (1354)
Q Consensus 887 ~~y~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~~--~~~-~--~~~~~iy~~l~~~~~i~~~~~~~~~~~ 961 (1354)
+.+++|++..+. .+...+++.++...+.+..+++....++.- ... . ...+.+++++.++..++.+++.+....
T Consensus 150 ~~l~~~~~~~~~--~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 227 (711)
T TIGR00958 150 FRLLGLSGRDWP--WLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNY 227 (711)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555553322 223333344445556666677666555421 111 1 123344555566677788888889999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000680 962 LGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVA 1041 (1354)
Q Consensus 962 ~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l~~ 1041 (1354)
.+.+...++|.++++++++.|++||+++++|+++||+++|++.++..+...+..++..++.+++.+++++..+|++.++.
T Consensus 228 ~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~ 307 (711)
T TIGR00958 228 TMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVT 307 (711)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000680 1042 IFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWL 1121 (1354)
Q Consensus 1042 l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl 1121 (1354)
+..+++..++.+++.+..++..+...+..+...+++.|+++|+++||+|+.|+++.+++.+..++..+............
T Consensus 308 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (711)
T TIGR00958 308 LINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGY 387 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777788887787777777888888999999999999999999999999999999887766654443332222
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCC
Q 000680 1122 ILRVEALQNLTL-FTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAI 1200 (1354)
Q Consensus 1122 ~~~l~~l~~~~~-~~~~~~~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~~~ 1200 (1354)
.....++..+.. ++..+...++..|.++.|.+..++.|...+..++..+...+.++++...+.+|+.++++.+++.+..
T Consensus 388 ~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~ 467 (711)
T TIGR00958 388 LWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT 467 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 222222222211 1222233455689999999999999999999999999999999999999999999999877654321
Q ss_pred CCCCCCCCCCCCcceEEEEEEEEEeCCC-CCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCe
Q 000680 1201 VEDKRPPSSWPFKGRIELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGV 1279 (1354)
Q Consensus 1201 ~~~~~~~~~wp~~G~I~f~nVsf~Y~~~-~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGv 1279 (1354)
. ....++..|.|+|+||+|+|+.+ .++||+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|++||+
T Consensus 468 --~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~ 543 (711)
T TIGR00958 468 --G--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGV 543 (711)
T ss_pred --C--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCE
Confidence 1 11223467899999999999642 246999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHHhccCceecccccccccchhhhcCCC-CCCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1280 DICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1280 DI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~-~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
|+++++.+++|++|++|||||++|+|||||||... .+++|||+++|+++++++++|+++|+|||| .|.|+|-|
T Consensus 544 ~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGG 621 (711)
T TIGR00958 544 PLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGG 621 (711)
T ss_pred EHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHH
Confidence 99999999999999999999999999999999744 357899999999999999999999999999 47788854
No 48
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.7e-52 Score=524.46 Aligned_cols=506 Identities=16% Similarity=0.167 Sum_probs=348.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 267 VRKVITNVYLKENIFIAICALLRTIAVVVG-PLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRS 345 (1354)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 345 (1354)
+++.+++.+++.++...++.++..++..+. |++...+++..... ...-+.+++.+++..++..+ ..+...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 75 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTS---LLVLPEFLGLLLLLMAVTLG----SQLALTTL 75 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---chHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 455667777888888888888888887764 67767777644221 11111111111111111111 22334455
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000680 346 GMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLV 425 (1354)
Q Consensus 346 ~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~ 425 (1354)
+.++...+...+|+|.++++....++..+|+++|.++.|++.+..+...+..++...+.++++++++++.-++.+++.++
T Consensus 76 ~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 155 (547)
T PRK10522 76 GHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAWLSPKMLLVTAI 155 (547)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 66666667777888888887665567789999999999999998765556667777777777777666543333344333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc--h----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 426 LFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQS--W----EEKFKSLIESRREKEFKWLSEAQLR 499 (1354)
Q Consensus 426 v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~--w----E~~f~~~i~~~R~~El~~l~~~~~~ 499 (1354)
++.+.+.+...+.++.++..++.++..+++.+.++|.++|++++++.. . ++.|.+..++.++...+..+ .
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 231 (547)
T PRK10522 156 WMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRADT----F 231 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHHH----H
Confidence 333333445566777788888889999999999999999999998433 2 33344444444433332211 1
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 000680 500 KAYGTVIYWMSPTI-ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHEL 578 (1354)
Q Consensus 500 ~~~~~~~~~~~p~~-v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~ 578 (1354)
.............+ +.+..+.... .+...++...++ ......+..|+..+...+..+.+++++.+|+.+++..++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~ 308 (547)
T PRK10522 232 HLSAVNWSNIMMLGAIGLVFYMANS-LGWADTNVAATY--SLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYK 308 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hhcCChHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 11111110011111 1111111111 111122222222 2223335689999999999999999999999999754432
Q ss_pred CcchhhhccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC
Q 000680 579 NNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG 658 (1354)
Q Consensus 579 ~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g 658 (1354)
++.. +. ...+..+.++++|++|+|+.+ +++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 309 ~~~~-~~-~~~~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g 384 (547)
T PRK10522 309 AEFP-RP-QAFPDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDG 384 (547)
T ss_pred cccc-cc-cccCcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC
Confidence 1101 11 111112479999999999742 4699999999999999999999999999999999999999999999987
Q ss_pred -------------eEEEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -------------~i~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
+++|++|+|.++++|++|| +...++++.+++++.+++..+++. ++|. .+|.+||||||
T Consensus 385 ~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LSgGq~ 455 (547)
T PRK10522 385 KPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLSKGQK 455 (547)
T ss_pred EECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCCHHHH
Confidence 4999999999999999999 444566677777777777665542 2221 24789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhhcCEEEEEeCCeEEEe
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1354)
||++||||++++|++++||||||+||+++++.+.+.+..... +++|+|+|||+++.+..+|+|++|++|++++.
T Consensus 456 qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 456 KRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999998876654432 58999999999999999999999999999876
No 49
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=3.8e-53 Score=544.40 Aligned_cols=438 Identities=21% Similarity=0.275 Sum_probs=361.9
Q ss_pred HHHHHHHHHhHHHHHHhhhcC--CCCc--c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000680 909 QSGFVGLQAAATYWLAYAIQI--PKIT--S-GILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPM 983 (1354)
Q Consensus 909 ~~~~~~~~~~~~~wl~~~~~~--~~~~--~-~~~~~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~ 983 (1354)
.++...+.+..++.+...++. +... . .....+++++.++..++.+++.+.....+.+...+++.+++++++++|+
T Consensus 145 ~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~ 224 (686)
T TIGR03797 145 GLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPV 224 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 333444555555555544432 1111 1 1223445555666778888999999999999999999999999999999
Q ss_pred ccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 984 LFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELI 1063 (1354)
Q Consensus 984 ~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l~~l~~~~~~~~i~~~y~~~sr~l~ 1063 (1354)
+||++.++|++++|++ |++.++..+...+...+..++.+++.++++++++|++.++++.+++++..+..++.+..+...
T Consensus 225 ~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~ 303 (686)
T TIGR03797 225 SFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKE 303 (686)
T ss_pred HHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999997 789998888877777666666677788888999999988877666666666666666666666
Q ss_pred HHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000680 1064 RINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTA-ALFLVL 1142 (1354)
Q Consensus 1064 rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~-~~~~vl 1142 (1354)
+......+...+++.|+++|+.+||+|+.|+++.+++.+..++..+..+.......|......++..+..+++ .+.+.+
T Consensus 304 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~l 383 (686)
T TIGR03797 304 RRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISL 383 (686)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666667788999999999999999999999999999999998888888777777777666665554433322 333445
Q ss_pred hcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEE
Q 000680 1143 IPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLK 1222 (1354)
Q Consensus 1143 ~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVs 1222 (1354)
+..|.++.|.+..+.++...+..|+..+...+.+++....+.+|+.++++.|+|.+. +..++ .+..|.|+|+||+
T Consensus 384 v~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~---~~~~~--~~~~~~I~~~nvs 458 (686)
T TIGR03797 384 LGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE---AKTDP--GKLSGAIEVDRVT 458 (686)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---CcCCC--CCCCceEEEEEEE
Confidence 568999999999999999999999999999999999999999999999987766431 11111 1346789999999
Q ss_pred EEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccccc
Q 000680 1223 IRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTL 1302 (1354)
Q Consensus 1223 f~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~L 1302 (1354)
|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|++||+|+++++.+++|++|++|||||+|
T Consensus 459 f~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l 538 (686)
T TIGR03797 459 FRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRL 538 (686)
T ss_pred EEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCcc
Confidence 99976667799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1303 FRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1303 F~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
|+|||||||..++.++|||+++|++.|+++++|+++|+|||| .|.|+|-|
T Consensus 539 f~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGG 592 (686)
T TIGR03797 539 MSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGG 592 (686)
T ss_pred CcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHH
Confidence 999999999876668999999999999999999999999999 57888865
No 50
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=3.4e-53 Score=546.68 Aligned_cols=460 Identities=19% Similarity=0.217 Sum_probs=368.4
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHHHhhhcC--CCCcc---hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 886 WKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI--PKITS---GILIGVYAGVSTASAVFVYFRSFFAA 960 (1354)
Q Consensus 886 ~~~y~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~--~~~~~---~~~~~iy~~l~~~~~i~~~~~~~~~~ 960 (1354)
++.++.+++..++.. ...+++.++...+.++.++++...++. ++... ..+..+++++.++..++.+++.++..
T Consensus 144 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (708)
T TIGR01193 144 LLKFIPLITRQKKLI--VNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLN 221 (708)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666443332 222333334445556666666665543 11111 11223344455666778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000680 961 HLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVV 1040 (1354)
Q Consensus 961 ~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l~ 1040 (1354)
..+.+...+++.++++++++.|++||++.++|++++|++ |.+.+...+...+...+..++.+++.++++++++|+++++
T Consensus 222 ~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 300 (708)
T TIGR01193 222 VLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLL 300 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999999999999998 8888877776666666666667777777888999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000680 1041 AIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEW 1120 (1354)
Q Consensus 1041 ~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1120 (1354)
++..++++..+...+.+..++..+......+...+++.|+++|+.|||+||.|+++.+++.+..++..+..+.......+
T Consensus 301 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (708)
T TIGR01193 301 SLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQG 380 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777777777777778888888888888889999999999999999999999999999988888777666655544444
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCC
Q 000680 1121 LILRVEALQNLTL-FTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPA 1199 (1354)
Q Consensus 1121 l~~~l~~l~~~~~-~~~~~~~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~~ 1199 (1354)
......++..+.. ++..+.+.++..|.+|.|.+.++.++...+..|+..+...+.+++....+++|+.++++.|+|.+.
T Consensus 381 ~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~ 460 (708)
T TIGR01193 381 QQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFIN 460 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 4333333332222 222333455568999999999999999999999999999999999999999999999988877532
Q ss_pred CCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCe
Q 000680 1200 IVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGV 1279 (1354)
Q Consensus 1200 ~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGv 1279 (1354)
. ......++..|.|+|+||+|+|+++ +++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|+|||+
T Consensus 461 ~---~~~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~ 536 (708)
T TIGR01193 461 K---KKRTELNNLNGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGF 536 (708)
T ss_pred c---ccccCCCCCCCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCE
Confidence 1 1112234457899999999999644 46999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHHhccCceecccccccccchhhhcCCC--CCCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1280 DICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL--GLYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1280 DI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~--~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
|+++++.+++|++|++|||||+||+|||||||..+ .+++|+|+++|++.++++++|+++|+|||| .|.|+|-|
T Consensus 537 ~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgG 615 (708)
T TIGR01193 537 SLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGG 615 (708)
T ss_pred EHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHH
Confidence 99999999999999999999999999999999755 358999999999999999999999999999 57888865
No 51
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=6.3e-53 Score=534.29 Aligned_cols=458 Identities=18% Similarity=0.144 Sum_probs=357.4
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHHHhhhcC---CC--Cc-chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 887 KPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI---PK--IT-SGILIGVYAGVSTASAVFVYFRSFFAA 960 (1354)
Q Consensus 887 ~~y~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~---~~--~~-~~~~~~iy~~l~~~~~i~~~~~~~~~~ 960 (1354)
+.+++|++..++... +.+++.++...+....++.+...++. ++ .. ...++.+++++.++..++.+++.++..
T Consensus 11 ~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (588)
T PRK11174 11 RWLKQQSKPAKRWLN--LSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGF 88 (588)
T ss_pred HHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667765443322 22333333444445555555544431 11 11 112334455555667778888889999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000680 961 HLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVV 1040 (1354)
Q Consensus 961 ~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l~ 1040 (1354)
..+.+...+++.++++++++.|++||++.++|++++|+++|++.++..+...+..++..++.+++.++++++++|+++++
T Consensus 89 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~ 168 (588)
T PRK11174 89 KAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLI 168 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888888888888888888999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000680 1041 AIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEW 1120 (1354)
Q Consensus 1041 ~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1120 (1354)
++.++++..++..++.+..++..+...+..+...+++.|+++|+++||+|+.|+++.+++.+..++..+..........+
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (588)
T PRK11174 169 LLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFL 248 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776677777777777777777778888999999999999999999999999999999888877766655554444
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHhcCCccChhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 000680 1121 LILRVEALQNLTLFTAA-LFLVLIPRGYVAPGLV---------GLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQF 1190 (1354)
Q Consensus 1121 l~~~l~~l~~~~~~~~~-~~~vl~~~g~ls~g~~---------gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~ 1190 (1354)
......++..+.++++. .++... .|.++.|.+ .+++.++..+..|+..+...+.++.....+.+|+.++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~ 327 (588)
T PRK11174 249 SSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTF 327 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433322221 222222 356665543 2333566778899999999999999999999999999
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCC
Q 000680 1191 MHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPA 1270 (1354)
Q Consensus 1191 ~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~ 1270 (1354)
++.|++.+. ++. .+...+..++|+|+||+|.|.++ ++||+|+||+|+|||++||||+||||||||+++|.|+| |+
T Consensus 328 l~~~~~~~~--~~~-~~~~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~ 402 (588)
T PRK11174 328 LETPLAHPQ--QGE-KELASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY 402 (588)
T ss_pred HcCCCcccC--CCc-cccCCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC
Confidence 987765321 111 11111234689999999988655 46999999999999999999999999999999999999 99
Q ss_pred CCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCCcCC----C
Q 000680 1271 GGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDS----S 1345 (1354)
Q Consensus 1271 ~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~ 1345 (1354)
+|+|++||+|+++++.+++|++|++|||||+||+|||||||..++ +++|||+++|++.|++++||++||+|||| .
T Consensus 403 ~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 403 QGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred CcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccC
Confidence 999999999999999999999999999999999999999997653 58999999999999999999999999999 4
Q ss_pred Ccccccc
Q 000680 1346 GKLFSAA 1352 (1354)
Q Consensus 1346 G~n~s~~ 1352 (1354)
|.|+|-|
T Consensus 483 G~~LSGG 489 (588)
T PRK11174 483 AAGLSVG 489 (588)
T ss_pred CCCCCHH
Confidence 7788854
No 52
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.2e-52 Score=542.23 Aligned_cols=464 Identities=18% Similarity=0.205 Sum_probs=375.3
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHHHhhhcC--CCCc-c--hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 886 WKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI--PKIT-S--GILIGVYAGVSTASAVFVYFRSFFAA 960 (1354)
Q Consensus 886 ~~~y~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~--~~~~-~--~~~~~iy~~l~~~~~i~~~~~~~~~~ 960 (1354)
++.++.+++..++... ..+++.++...+.++.++.+...++. ++.. . ..+..+++++.++..++.+++.++..
T Consensus 142 ~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (710)
T TIGR03796 142 LRALWRRLRGSRGALL--YLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLR 219 (710)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666664433222 22222333334445555555554432 1111 1 12234445555667788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000680 961 HLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVV 1040 (1354)
Q Consensus 961 ~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l~ 1040 (1354)
..+.+...+++.++++++++.|++||++.++|++++|+++| +.+...+...+..++..++.+++.++++++++|+++++
T Consensus 220 ~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 298 (710)
T TIGR03796 220 RLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLI 298 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998 57887787777788888888888889999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000680 1041 AIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEW 1120 (1354)
Q Consensus 1041 ~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1120 (1354)
++..++++.++..++.+..++..+......+...+++.|+++|+.+||+++.|+.+.+++.+..++..+..........+
T Consensus 299 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (710)
T TIGR03796 299 GIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQI 378 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777777777777777777777777777888999999999999999999999999999998888877777666666666
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCC
Q 000680 1121 LILRVEALQNLTLFTA-ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPA 1199 (1354)
Q Consensus 1121 l~~~l~~l~~~~~~~~-~~~~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~~ 1199 (1354)
......++..+..+++ .+.++++..|.++.|.+.++.++...+..|+..+...+.+++....+.+|+.++++.|+|.+.
T Consensus 379 ~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 458 (710)
T TIGR03796 379 LGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLL 458 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 6655555554433322 333455678999999999999999999999999999999999999999999999988776532
Q ss_pred CCCC--C-CCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEE
Q 000680 1200 IVED--K-RPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI 1276 (1354)
Q Consensus 1200 ~~~~--~-~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~I 1276 (1354)
.... . .....++..|.|+|+||+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|++
T Consensus 459 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 538 (710)
T TIGR03796 459 EEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILF 538 (710)
T ss_pred ccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 1100 0 011113456899999999999876667999999999999999999999999999999999999999999999
Q ss_pred cCeeCCCCChHHHhccCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCccccc
Q 000680 1277 DGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSA 1351 (1354)
Q Consensus 1277 DGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~ 1351 (1354)
||+|+++++.+++|++|++|||||+||+|||||||..++ +++|+|+++|++.++++++|.++|+|||| .|.|+|-
T Consensus 539 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSG 618 (710)
T TIGR03796 539 DGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSG 618 (710)
T ss_pred CCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCH
Confidence 999999999999999999999999999999999997654 58999999999999999999999999999 5888886
Q ss_pred c
Q 000680 1352 A 1352 (1354)
Q Consensus 1352 ~ 1352 (1354)
|
T Consensus 619 G 619 (710)
T TIGR03796 619 G 619 (710)
T ss_pred H
Confidence 5
No 53
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=5.1e-52 Score=534.67 Aligned_cols=460 Identities=21% Similarity=0.238 Sum_probs=368.4
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHHHhhhcC--CCCc--ch-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 886 WKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI--PKIT--SG-ILIGVYAGVSTASAVFVYFRSFFAA 960 (1354)
Q Consensus 886 ~~~y~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~--~~~~--~~-~~~~iy~~l~~~~~i~~~~~~~~~~ 960 (1354)
++.++.+++..++... ..+++.++...+.++.++.+...++. +... .. .+..+++++.++..++.+++.++..
T Consensus 135 ~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (694)
T TIGR03375 135 KHWFWSTLKESWPLYR--DVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLD 212 (694)
T ss_pred chHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666654333222 22223333344455566665555442 1111 11 1223344445567788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000680 961 HLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVV 1040 (1354)
Q Consensus 961 ~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l~ 1040 (1354)
+.+.+...+++.++++|++++|++| ++.++|++++|+ +|++.+...+...+...+..++.++..++++++++|+++++
T Consensus 213 ~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 290 (694)
T TIGR03375 213 VAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWV 290 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999998 788999999999 79999999988877777777777777788888999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000680 1041 AIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEW 1120 (1354)
Q Consensus 1041 ~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1120 (1354)
.+..++++..+..++.+..++..+......+...+++.|+++|+.+||+|+.|+.+.+++.+..++..+..+.......+
T Consensus 291 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (694)
T TIGR03375 291 PLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNL 370 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777778889999999999999999999999999999999988877777666665555
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCC
Q 000680 1121 LILRVEALQNLTLF-TAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPA 1199 (1354)
Q Consensus 1121 l~~~l~~l~~~~~~-~~~~~~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~~ 1199 (1354)
......++..+..+ +..+.+.++..|.++.|.+.+++++...+..|+..+...+.+++....+.+|+.++++.|+|.+.
T Consensus 371 ~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 450 (694)
T TIGR03375 371 ATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPE 450 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 55444444433222 22233445568999999999999999999999999999999999999999999999998776432
Q ss_pred CCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCe
Q 000680 1200 IVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGV 1279 (1354)
Q Consensus 1200 ~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGv 1279 (1354)
. .......+..|.|+|+||+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|++||+
T Consensus 451 ~---~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~ 527 (694)
T TIGR03375 451 G---TRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGV 527 (694)
T ss_pred C---CCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 1 1111112346889999999999765567999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHHhccCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1280 DICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1280 DI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
|+++++++++|++|++|||||++|+|||||||...+ +++|+|+++|++.++++|+|+++|+|||| .|.|+|-|
T Consensus 528 ~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgG 605 (694)
T TIGR03375 528 DIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGG 605 (694)
T ss_pred EhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHH
Confidence 999999999999999999999999999999998654 48999999999999999999999999999 47788865
No 54
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=5.3e-52 Score=525.90 Aligned_cols=438 Identities=22% Similarity=0.308 Sum_probs=350.5
Q ss_pred HHHHHHHHHHhHHHHHHhhhcC--CCCc--chHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000680 908 AQSGFVGLQAAATYWLAYAIQI--PKIT--SGIL---IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFK 980 (1354)
Q Consensus 908 ~~~~~~~~~~~~~~wl~~~~~~--~~~~--~~~~---~~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~ 980 (1354)
+.+....+.+..++++...++. .... .... +.+++++.++..++.+++.+.....+.+...+++.++++++++
T Consensus 31 ~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~ 110 (592)
T PRK10790 31 MLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALR 110 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344444555666666655542 1111 1111 2223444455667778888888999999999999999999999
Q ss_pred CCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 981 APMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATAR 1060 (1354)
Q Consensus 981 ~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l~~l~~~~~~~~i~~~y~~~sr 1060 (1354)
+|++||++.++|++++|+++|++.++..+...+..++..++.+++.++++++++|++.++.+..+++...+...+.+..+
T Consensus 111 ~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~ 190 (592)
T PRK10790 111 QPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRYST 190 (592)
T ss_pred CCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888888888888888889999999877665554444444555555556
Q ss_pred HHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 000680 1061 ELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWL-ILRVEALQNLTLFTAALF 1139 (1354)
Q Consensus 1061 ~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl-~~~l~~l~~~~~~~~~~~ 1139 (1354)
...+......+...+++.|+++|+.+||+|+.++++.+++.+..++..+..+.......+. .....++..+..+++.+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (592)
T PRK10790 191 PIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLML 270 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666677888999999999999999999999999999988777666655444433332 222333332222222111
Q ss_pred HHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEE
Q 000680 1140 LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELR 1219 (1354)
Q Consensus 1140 ~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~ 1219 (1354)
......|.++.|.+.+++.|...+..|+..+...+.++++...+.+|+.++++.++++.. .. ..++..|+|+|+
T Consensus 271 ~~~~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~---~~---~~~~~~~~i~~~ 344 (592)
T PRK10790 271 FGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG---ND---DRPLQSGRIDID 344 (592)
T ss_pred HHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC---CC---ccCCCCCeEEEE
Confidence 112357899999999999999999999999999999999999999999999987654321 11 112345789999
Q ss_pred EEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceeccc
Q 000680 1220 QLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQE 1299 (1354)
Q Consensus 1220 nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQd 1299 (1354)
||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|++||+|+++++.+++|++|++||||
T Consensus 345 ~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~ 423 (592)
T PRK10790 345 NVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQD 423 (592)
T ss_pred EEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccC
Confidence 999999754 4699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1300 PTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1300 p~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
|+||+||||+||..+++++|+|+++|++++|++++|+++|+|||| .|.|+|-|
T Consensus 424 ~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGG 480 (592)
T PRK10790 424 PVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVG 480 (592)
T ss_pred CccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHH
Confidence 999999999999988788999999999999999999999999999 47888865
No 55
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=2.4e-51 Score=513.52 Aligned_cols=410 Identities=18% Similarity=0.207 Sum_probs=344.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHH
Q 000680 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVA 1017 (1354)
Q Consensus 938 ~~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~ 1017 (1354)
.++++++.++..++.+++.+.....+.+...+++.++++++++.|.+||++.++|++++|+++|++.++..+...+..++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~ 126 (529)
T TIGR02857 47 LGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLV 126 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44555666677788889999999999999999999999999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHH
Q 000680 1018 ASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFF 1097 (1354)
Q Consensus 1018 ~~~~~~i~~i~v~~~~~~~l~l~~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~ 1097 (1354)
..++.+++.+++++..+|.++++++..+++..++...+.+..++..+......+...+++.|+++|+++||+|+.|+++.
T Consensus 127 ~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~ 206 (529)
T TIGR02857 127 LAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQA 206 (529)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHH
Confidence 88888888888889999988777665555555555555555556666666677788999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 1098 QNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTA-ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCY 1176 (1354)
Q Consensus 1098 ~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~-~~~~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~ 1176 (1354)
+++.+..++..+..........+......++..+..+++ .+.++.+..|.++.|.+.+++.|+..+..|+..+...+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~ 286 (529)
T TIGR02857 207 AAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHA 286 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888777766666656666555555554433332 2233334488999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccH
Q 000680 1177 LANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGK 1256 (1354)
Q Consensus 1177 le~~~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGK 1256 (1354)
++....+.+|+.++++.+++... .. +...+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+|||||
T Consensus 287 ~~~~~~~~~ri~~ll~~~~~~~~---~~--~~~~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGK 361 (529)
T TIGR02857 287 RADGVAAAEALFAVLDAPRPLAG---KA--PVTAAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGK 361 (529)
T ss_pred HHHHHHHHHHHHHHhCCCcccCC---Cc--CCCCCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCH
Confidence 99999999999999985543221 11 11122346899999999997655579999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHH
Q 000680 1257 TTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTI 1335 (1354)
Q Consensus 1257 STL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I 1335 (1354)
|||+++|.|+|+|++|+|++||+|+++++.+++|+++++|||||++|+|||||||.... +++|+|+++|++.+++++++
T Consensus 362 STL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i 441 (529)
T TIGR02857 362 STLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFV 441 (529)
T ss_pred HHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999997543 57999999999999999999
Q ss_pred hcCCCCcCC----CCcccccc
Q 000680 1336 SSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1336 ~~Lp~gldt----~G~n~s~~ 1352 (1354)
+++|+|||| .|.++|-|
T Consensus 442 ~~lp~Gldt~v~e~g~~LSgG 462 (529)
T TIGR02857 442 AALPQGLDTLIGEGGAGLSGG 462 (529)
T ss_pred HhCcccccchhccccccCCHH
Confidence 999999999 47788754
No 56
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.7e-51 Score=515.60 Aligned_cols=407 Identities=18% Similarity=0.191 Sum_probs=340.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHH
Q 000680 941 YAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASG 1020 (1354)
Q Consensus 941 y~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~ 1020 (1354)
+.++.++..++.++..+.....+.+...++|.+++++++++|++||++.++|++++|+++|++.++..+...+..++..+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~ 145 (574)
T PRK11160 66 VRGAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAAL 145 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455667778888888999999999999999999999999999999999999999999999999999999898888888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHH
Q 000680 1021 TELLAIIGIMTFVTWQVLVVAIFAMVAVR-FVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQN 1099 (1354)
Q Consensus 1021 ~~~i~~i~v~~~~~~~l~l~~l~~~~~~~-~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~ 1099 (1354)
+.+++.++++++++|+++++++.++++.. .+..++.+..++..+......+.+.+.+.|+++|+++||+|+.|+++.++
T Consensus 146 ~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~ 225 (574)
T PRK11160 146 VVILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQ 225 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHH
Confidence 98999999999999999887655444433 34455666667777777788889999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccChhHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 000680 1100 YLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFT-LTGTQVFLSRWYCYLA 1178 (1354)
Q Consensus 1100 ~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~vl~~~g~ls~g~~gl~l~ya~~-l~~~l~~l~~~~~~le 1178 (1354)
+.+..++..+..........+.....+++..+..+++...+.....|.++.|.+..++.|+.. ...++..+...+..++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~ 305 (574)
T PRK11160 226 LEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGGVGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLG 305 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888877777666666666555555443333322222223688899988887777644 4567777888889999
Q ss_pred HHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHH
Q 000680 1179 NYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTT 1258 (1354)
Q Consensus 1179 ~~~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKST 1258 (1354)
....|.+|+.++++.|+|.+.. ...++ .+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+|||||||
T Consensus 306 ~~~~s~~ri~~ll~~~~~~~~~--~~~~~--~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKST 381 (574)
T PRK11160 306 QVIASARRINEITEQKPEVTFP--TTSTA--AADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKST 381 (574)
T ss_pred HHHHHHHHHHHHHhCCCCCCCC--cccCC--CCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHH
Confidence 9999999999999877653211 11111 1345789999999999765456999999999999999999999999999
Q ss_pred HHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhc
Q 000680 1259 LISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISS 1337 (1354)
Q Consensus 1259 L~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~ 1337 (1354)
|+++|.|+|+|++|+|++||+|+++++.+++|++|++|||||+||+|||||||.... +.+|+|+++|++++++++++++
T Consensus 382 L~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~ 461 (574)
T PRK11160 382 LLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED 461 (574)
T ss_pred HHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC
Confidence 999999999999999999999999999999999999999999999999999996443 5799999999999999999999
Q ss_pred CCCCcCC----CCcccccc
Q 000680 1338 LPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1338 Lp~gldt----~G~n~s~~ 1352 (1354)
|+|||| .|.++|-|
T Consensus 462 -p~GldT~vge~g~~LSgG 479 (574)
T PRK11160 462 -DKGLNAWLGEGGRQLSGG 479 (574)
T ss_pred -ccccCchhcCCCCCCCHH
Confidence 999999 67888854
No 57
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=8.5e-51 Score=514.57 Aligned_cols=407 Identities=19% Similarity=0.269 Sum_probs=351.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHH
Q 000680 941 YAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASG 1020 (1354)
Q Consensus 941 y~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~ 1020 (1354)
++++.++..++.+++.++....+.+....++.++++++++.|.++|++...|++++|+++|++.+...+...+..++..+
T Consensus 71 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~ 150 (582)
T PRK11176 71 VIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREG 150 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666777788888888899999999999999999999999999999999999999999999999988888888999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHH
Q 000680 1021 TELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNY 1100 (1354)
Q Consensus 1021 ~~~i~~i~v~~~~~~~l~l~~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~ 1100 (1354)
+.+++.++++++.+|+++++++..++++.++..+..+..++..+......+...+++.|.++|+.+||+|+.++++.+++
T Consensus 151 ~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~ 230 (582)
T PRK11176 151 ASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRF 230 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHH
Confidence 99999999999999998887777767766666677777777777777778889999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 1101 LKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAA-LFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLAN 1179 (1354)
Q Consensus 1101 ~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~-~~~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~ 1179 (1354)
.+..+...+..........+.....+++..+....+. +....+..|.+++|.+.+++++...+..|+..+...+..++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~ 310 (582)
T PRK11176 231 DKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQR 310 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888777777777766666665544333322 223445679999999999999999999999999999999999
Q ss_pred HhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHH
Q 000680 1180 YIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTL 1259 (1354)
Q Consensus 1180 ~~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL 1259 (1354)
...+.+|+.++++.++|.+. +.. ...|..+.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||
T Consensus 311 ~~~~~~ri~~~~~~~~~~~~---~~~--~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTL 385 (582)
T PRK11176 311 GMAACQTLFAILDLEQEKDE---GKR--VIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTI 385 (582)
T ss_pred HHHHHHHHHHHhcCCCcCCC---CCc--CCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHH
Confidence 99999999999987765321 111 1124457899999999997665679999999999999999999999999999
Q ss_pred HHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCC--CCCCHHHHHHHHHHcCCchHHhc
Q 000680 1260 ISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL--GLYSDDEIWKALEKCQLKTTISS 1337 (1354)
Q Consensus 1260 ~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~--~~~sDeeI~~AL~~a~l~~~I~~ 1337 (1354)
+++|+|+|+|++|+|++||+|+++++.+++|++|++|||||++|+||||+||.-. ++++|+|+++|++.+++++++++
T Consensus 386 l~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~ 465 (582)
T PRK11176 386 ANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINK 465 (582)
T ss_pred HHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999742 34899999999999999999999
Q ss_pred CCCCcCC----CCcccccc
Q 000680 1338 LPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1338 Lp~gldt----~G~n~s~~ 1352 (1354)
||+|||| .|.|+|-|
T Consensus 466 lp~Gldt~ig~~g~~LSGG 484 (582)
T PRK11176 466 MDNGLDTVIGENGVLLSGG 484 (582)
T ss_pred cccccCceeCCCCCcCCHH
Confidence 9999999 47778754
No 58
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=9.2e-51 Score=513.66 Aligned_cols=440 Identities=19% Similarity=0.286 Sum_probs=373.9
Q ss_pred HHHHHHHHHHhHHHHHHhhhcCC--CC-c--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000680 908 AQSGFVGLQAAATYWLAYAIQIP--KI-T--SGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAP 982 (1354)
Q Consensus 908 ~~~~~~~~~~~~~~wl~~~~~~~--~~-~--~~~~~~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p 982 (1354)
+.++..++.+..++++...++.. .. . ...+.++++++.++..++.+++.++....+.+....++..+++++++.|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~~ 101 (571)
T TIGR02203 22 AMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLP 101 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33444445555556655444321 11 1 1122345666677778888999999999999999999999999999999
Q ss_pred CccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 983 MLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATAREL 1062 (1354)
Q Consensus 983 ~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l~~l~~~~~~~~i~~~y~~~sr~l 1062 (1354)
.++|++.+.|++++|+++|++.++..+...+..++..++.+++.++++++.+|+++++.+.++++..++..++.+..++.
T Consensus 102 ~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~ 181 (571)
T TIGR02203 102 VSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRI 181 (571)
T ss_pred HHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888888888888888888888
Q ss_pred HHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000680 1063 IRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFT-AALFLV 1141 (1354)
Q Consensus 1063 ~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~-~~~~~v 1141 (1354)
.+......++..+++.|+++|+.+||+++.++++.+++.+..+...+..........+......++..+...+ ..+.+.
T Consensus 182 ~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 261 (571)
T TIGR02203 182 SKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALF 261 (571)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999999999999999999999999888887777777777666655555443332 233344
Q ss_pred HhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEE
Q 000680 1142 LIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQL 1221 (1354)
Q Consensus 1142 l~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nV 1221 (1354)
.+..|.+++|.+..+.+++..+..|+..+...+..++....+.+|+.++++.++|.+. +..+.. +..++|+|+||
T Consensus 262 ~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~~--~~~~~i~~~~v 336 (571)
T TIGR02203 262 QAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDT---GTRAIE--RARGDVEFRNV 336 (571)
T ss_pred HHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC---CCCCCC--CCCCeEEEEEE
Confidence 5568999999999999999999999999999999999999999999999987665432 111111 24578999999
Q ss_pred EEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceeccccc
Q 000680 1222 KIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPT 1301 (1354)
Q Consensus 1222 sf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~ 1301 (1354)
+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|++||+|+++++.+++|+++++|||||+
T Consensus 337 ~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~ 416 (571)
T TIGR02203 337 TFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVV 416 (571)
T ss_pred EEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcc
Confidence 99997655579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhcCCCC--CCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1302 LFRGSVRTNLDPLG--LYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1302 LF~GTIR~NLdp~~--~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
+|+||||+||.-++ +++|+|+++||+++++++++.++|+|||| .|.|+|-|
T Consensus 417 lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 473 (571)
T TIGR02203 417 LFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGG 473 (571)
T ss_pred cccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHH
Confidence 99999999997553 58999999999999999999999999998 47788864
No 59
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=8.9e-51 Score=522.69 Aligned_cols=461 Identities=20% Similarity=0.268 Sum_probs=369.0
Q ss_pred cHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHHHhhhcC--CCC--cc-hHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 885 GWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI--PKI--TS-GILIGVYAGVSTASAVFVYFRSFFA 959 (1354)
Q Consensus 885 ~~~~y~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~--~~~--~~-~~~~~iy~~l~~~~~i~~~~~~~~~ 959 (1354)
+++.++.+++..++... ..+++.++...+..+.++.+...++. +.. .. ..+..+++++.++..++.+++.++.
T Consensus 126 ~~~~~~~~~~~~~~~~~--~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~ 203 (694)
T TIGR01846 126 GFSWFIPAIIRYRKQFR--EVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLF 203 (694)
T ss_pred cHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666654333222 22222333344445556666555442 111 11 1223344555566778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000680 960 AHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLV 1039 (1354)
Q Consensus 960 ~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l 1039 (1354)
...+.+...+++.+++++++++|++||++.++|++++|+ +|++.+...+...+..++..++.+++.++++++++|++++
T Consensus 204 ~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 282 (694)
T TIGR01846 204 AHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTG 282 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 6999999988777777666666666667888899999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000680 1040 VAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVME 1119 (1354)
Q Consensus 1040 ~~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1119 (1354)
+++..++++..+..+..+..++..+...+..+...+++.|+++|+.+||+||.|+.+.+++.+..++..+..+.......
T Consensus 283 i~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (694)
T TIGR01846 283 VVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGN 362 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87766666666666665555555555566677888999999999999999999999999999999988888777777777
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCC
Q 000680 1120 WLILRVEALQNLTLFTA-ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPP 1198 (1354)
Q Consensus 1120 wl~~~l~~l~~~~~~~~-~~~~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~ 1198 (1354)
+.....+++..+..+++ .+.+.++..|.++.|.+.++.+++..+..|+..+...+.+++....+.+|+.++++.|+|.+
T Consensus 363 ~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 442 (694)
T TIGR01846 363 IAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPR 442 (694)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 76666666555433332 23344556899999999999999999999999999999999999999999999998877643
Q ss_pred CCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcC
Q 000680 1199 AIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG 1278 (1354)
Q Consensus 1199 ~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDG 1278 (1354)
.. +..+. .+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|+|||
T Consensus 443 ~~--~~~~~--~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg 518 (694)
T TIGR01846 443 SA--GLAAL--PELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDG 518 (694)
T ss_pred CC--CCCCC--CCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 21 11111 123578999999999987666799999999999999999999999999999999999999999999999
Q ss_pred eeCCCCChHHHhccCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1279 VDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1279 vDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
+|+++++.+++|+++++|||||++|+|||||||...+ +++|+++++|++.++++++++++|+|||| .|.|+|-|
T Consensus 519 ~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgG 597 (694)
T TIGR01846 519 VDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGG 597 (694)
T ss_pred EehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHH
Confidence 9999999999999999999999999999999997543 57999999999999999999999999999 47788865
No 60
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=6.8e-49 Score=498.17 Aligned_cols=504 Identities=16% Similarity=0.148 Sum_probs=362.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc-chhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 278 ENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEE-NLQE-GLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMV 355 (1354)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~-~~~~-g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~~ 355 (1354)
.++...++.++.+.+....|.+...+++.+.+.+. .... .+.+++++++. +++.....|...++..++|..+..
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~----~~~~~~~~~~~~~~~~~~r~~l~~ 172 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPA----SFINSAIKYLLKELKLRFRVRLTR 172 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777788888999999999998886543321 1111 11122222222 233333334466677788888888
Q ss_pred HHHHHHhcCCcc----cCCCCCHHHHHHHHHhHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHH
Q 000680 356 AVYQKQLKLSSL----GRKKHSTGEIVNYIAVDAYRMGEFP-FWFHLTWSLALQLFLAIGVLFGVVGLGALPG-LVLFLI 429 (1354)
Q Consensus 356 ~iy~K~L~ls~~----~~~~~~~G~ivNlms~D~~~i~~~~-~~~~~~w~~plqi~~~~~~L~~~lG~~~l~g-l~v~~i 429 (1354)
.++++.++-... ..++ .+|++.+.++.|++.+.+.. ..+..+...++.++.+++.++..++|....+ ++.+.+
T Consensus 173 ~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l 251 (659)
T TIGR00954 173 YLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFA 251 (659)
T ss_pred HHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 777777663211 1122 57999999999999998854 3456666777888888888887677654332 223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWM 509 (1354)
Q Consensus 430 ~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~ 509 (1354)
.+.+...+.+.+.+..++..+..++-....+|.++|+++||.|+-|+...++.++.-++-.+..++.....+....+...
T Consensus 252 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 331 (659)
T TIGR00954 252 TGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNI 331 (659)
T ss_pred HHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34445556777888888888899999999999999999999999999877776554444333333333222221111111
Q ss_pred HH----HHHHHHHHHHHHHhCC----CCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 000680 510 SP----TIISSVIFLGCALTGS----APLNASTIFTV----LATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHE 577 (1354)
Q Consensus 510 ~p----~~v~~~~f~~~~l~~~----~~Lt~~~~Ft~----l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e 577 (1354)
.. ..+..+..+..++... +.+|.+..+.. ..++..+..|+..+...+..+.++.++.+|+.++++.++
T Consensus 332 i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~ 411 (659)
T TIGR00954 332 VAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLD 411 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1111111112122211 46787754332 334667789999999999999999999999999996422
Q ss_pred C-Cc-----chhhh-----------------ccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCC
Q 000680 578 L-NN-----DDVRR-----------------ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGA 634 (1354)
Q Consensus 578 ~-~~-----~~~~~-----------------~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~Gs 634 (1354)
. +. ..... .......+.|+++|++|+|+.+ +++|+|+||++++||+++|+|||||
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~isl~i~~Ge~~~IvG~nGs 489 (659)
T TIGR00954 412 DVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESLSFEVPSGNHLLICGPNGC 489 (659)
T ss_pred HHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--CeeeecceEEECCCCEEEEECCCCC
Confidence 1 10 00000 0011123469999999999642 4699999999999999999999999
Q ss_pred CHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCCCCCCcHHHHHhcCC--------CCCHHHHHHHHHHhccHHHHhc
Q 000680 635 GKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSGSIRDNILYGK--------PMDKARYDKAIKACALDKDINN 704 (1354)
Q Consensus 635 GKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~~~~~~~ti~eni~~g~--------~~~~~~~~~~~~~~~l~~~l~~ 704 (1354)
|||||+++|+|+++|++|+|.+++ +++|+||+|+++++|++|||.++. ..++++..++++.+++.+.++.
T Consensus 490 GKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 569 (659)
T TIGR00954 490 GKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER 569 (659)
T ss_pred CHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh
Confidence 999999999999999999998864 699999999999999999999874 2345677889999999888877
Q ss_pred CCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh
Q 000680 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE 784 (1354)
Q Consensus 705 l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~ 784 (1354)
|.|.+|..+ .+.+||||||||++||||++++|++++||||||+||+++++.+.+.+.+ .|+|+|+|||+++.++.
T Consensus 570 -~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~~~~ 644 (659)
T TIGR00954 570 -EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSLWKY 644 (659)
T ss_pred -cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHHHHh
Confidence 888888875 5789999999999999999999999999999999999999998775533 38999999999999989
Q ss_pred cCEEEEEeC
Q 000680 785 VDRILVLEG 793 (1354)
Q Consensus 785 ~d~i~~l~~ 793 (1354)
||++++|++
T Consensus 645 ~d~il~l~~ 653 (659)
T TIGR00954 645 HEYLLYMDG 653 (659)
T ss_pred CCEEEEEeC
Confidence 999999963
No 61
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=4.5e-49 Score=498.49 Aligned_cols=462 Identities=21% Similarity=0.268 Sum_probs=366.0
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHHHhhhcC--CCCc---chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 887 KPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI--PKIT---SGILIGVYAGVSTASAVFVYFRSFFAAH 961 (1354)
Q Consensus 887 ~~y~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~--~~~~---~~~~~~iy~~l~~~~~i~~~~~~~~~~~ 961 (1354)
+.+++|++..++.. .+.+++.+....+.+..++.+...++. .+.. ....+.+++++.++..++.+++.++...
T Consensus 7 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (576)
T TIGR02204 7 AALWPFVRPYRGRV--LAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTW 84 (576)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555655433222 222223333444455555555554432 1111 1122334444455566677788888889
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000680 962 LGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVA 1041 (1354)
Q Consensus 962 ~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l~~ 1041 (1354)
.+.+....++..+++++++.|.++|++...|++++|+++|++.++......+..++..++.+++.++++++++|++++++
T Consensus 85 ~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (576)
T TIGR02204 85 LGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLV 164 (576)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888888888888888888889999999988777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000680 1042 IFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWL 1121 (1354)
Q Consensus 1042 l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl 1121 (1354)
+..++++..+..++.+..+...+.....+....+++.|+++|+.+||+|+.++++.+++.+..+...+..........|+
T Consensus 165 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (576)
T TIGR02204 165 LLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALL 244 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666667777777777777888889999999999999999999999999999999887777666555555555
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCC
Q 000680 1122 ILRVEALQNLTL-FTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAI 1200 (1354)
Q Consensus 1122 ~~~l~~l~~~~~-~~~~~~~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~~~ 1200 (1354)
......+..+.. +...+.+..+..|.+++|.+..+..|+..+..|+..+...+.++.+...+.+|+.++++.++|.+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 324 (576)
T TIGR02204 245 TAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAP 324 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC
Confidence 544444333222 2222234445689999999999999999999999999999999999999999999999876553211
Q ss_pred CCCCCCCCCCCCcceEEEEEEEEEeCCCC-CCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCe
Q 000680 1201 VEDKRPPSSWPFKGRIELRQLKIRYRPNA-PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGV 1279 (1354)
Q Consensus 1201 ~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~-~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGv 1279 (1354)
. ...+..+|..+.|+|+||+|+|+++. +++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|++||+
T Consensus 325 ~--~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~ 402 (576)
T TIGR02204 325 A--HPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGV 402 (576)
T ss_pred C--CCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCE
Confidence 1 11112234557899999999997532 56999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHHhccCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1280 DICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1280 DI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
|+++++.+++|++++++||||++|+|||||||...+ +.+|++++++|+++++.++++++|+|+|| .|.|+|.|
T Consensus 403 ~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgG 480 (576)
T TIGR02204 403 DLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGG 480 (576)
T ss_pred EHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHH
Confidence 999999999999999999999999999999998543 47899999999999999999999999997 47788865
No 62
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.5e-48 Score=493.77 Aligned_cols=444 Identities=18% Similarity=0.216 Sum_probs=349.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhcCCCC-c-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000680 905 GVLAQSGFVGLQAAATYWLAYAIQIPKI-T-SGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAP 982 (1354)
Q Consensus 905 ~~~~~~~~~~~~~~~~~wl~~~~~~~~~-~-~~~~~~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p 982 (1354)
.+++.++...+.+..++++...++.-.. . ...++.+++++.++..+..++......+...+....+..++++++++.|
T Consensus 24 ~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 103 (588)
T PRK13657 24 LAVANVLLAAATFAEPILFGRIIDAISGKGDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERIIQLP 103 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3334444455566666666665543111 1 1112233333333333444444445555556666667779999999999
Q ss_pred CccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 983 MLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATAREL 1062 (1354)
Q Consensus 983 ~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l~~l~~~~~~~~i~~~y~~~sr~l 1062 (1354)
..+|++.+.|++++|+++|++.+...+...+..++..++..++.++++++.+|+++++.+.+++++..+..++.+..++.
T Consensus 104 ~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~ 183 (588)
T PRK13657 104 LAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKTKDG 183 (588)
T ss_pred HHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887777777777777777777788889999998888777777777788888888888
Q ss_pred HHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000680 1063 IRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFT-AALFLV 1141 (1354)
Q Consensus 1063 ~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~-~~~~~v 1141 (1354)
.+......+...+++.|+++|+.+||+|+.++.+.+++.+..+...+..........+.....+++..+..++ ..+.+.
T Consensus 184 ~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 263 (588)
T PRK13657 184 QAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGAA 263 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999999999999999999999999998888777766555555555444444433332222 223344
Q ss_pred HhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEE
Q 000680 1142 LIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQL 1221 (1354)
Q Consensus 1142 l~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nV 1221 (1354)
.+..|.+++|.+..++.++..+..++..+...+.++..+..+.+|+.++++.+++.+.. ++..+.. +..+.|+|+||
T Consensus 264 ~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~~~~~~~--~~~~~I~~~~v 340 (588)
T PRK13657 264 LVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP-PGAIDLG--RVKGAVEFDDV 340 (588)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-CCCCCcC--CCCCeEEEEEE
Confidence 55689999999999999999999999999999999999999999999998765442211 1111111 23568999999
Q ss_pred EEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceeccccc
Q 000680 1222 KIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPT 1301 (1354)
Q Consensus 1222 sf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~ 1301 (1354)
+|+|+++ +++|+|+||+++|||+|||||+||||||||+++|.|+|+|++|+|++||+|+++++.+++|++|++|||||.
T Consensus 341 sf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 419 (588)
T PRK13657 341 SFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAG 419 (588)
T ss_pred EEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcc
Confidence 9999643 469999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1302 LFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1302 LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
+|+||||+||.-+. +.+|+|+++|++++++++++.++|+|+|| .|+|+|-|
T Consensus 420 lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 475 (588)
T PRK13657 420 LFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGG 475 (588)
T ss_pred cccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHH
Confidence 99999999997443 57899999999999999999999999999 46788854
No 63
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=2.9e-48 Score=488.77 Aligned_cols=457 Identities=18% Similarity=0.210 Sum_probs=354.4
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 889 FMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPK--ITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKA 966 (1354)
Q Consensus 889 y~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~~~--~~~~~~~~iy~~l~~~~~i~~~~~~~~~~~~~~~~ 966 (1354)
+++|++..+.. +.+.+++.++...+.++.++.++..++.-. .....++.+++++.++..+..++........+.+.
T Consensus 10 l~~~l~~~k~~--~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (585)
T TIGR01192 10 ALSYLNVHKNR--VLLIVIANITLAAITIAEPILFGRIIDAISSKSDVLPTLALWAGFGVFNTIAYVLVAREADRLAHGR 87 (585)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555543332 223333334444555566666555444211 11111222222333334444455555555666667
Q ss_pred HHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000680 967 SKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMV 1046 (1354)
Q Consensus 967 s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l~~l~~~~ 1046 (1354)
..+++++++++++++|++||+++++|++++|+++|++.+.......+..++..++.+++.+++++.++|.++++++.+++
T Consensus 88 ~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~ 167 (585)
T TIGR01192 88 RATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGI 167 (585)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778899999999999999999999999999999999998888778777777787888888889999999988887778
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 000680 1047 AVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVE 1126 (1354)
Q Consensus 1047 ~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~ 1126 (1354)
++.++.+.+.+..++..+......+...+++.|+++|+++||+|+.++.+.+++.+..++..+..+.......+......
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (585)
T TIGR01192 168 LYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNR 247 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888889999999999999999999999999999988888766665554443333333333
Q ss_pred HHHHHHHH-HHHHHHHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCC
Q 000680 1127 ALQNLTLF-TAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKR 1205 (1354)
Q Consensus 1127 ~l~~~~~~-~~~~~~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~~~~~~~~ 1205 (1354)
++..+..+ +..+.++++..|.++.|.+.+++.|+..+..++..+...+.++.....+.+|+.++.+.+++... ...
T Consensus 248 ~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~---~~~ 324 (585)
T TIGR01192 248 MASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREE---PAD 324 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---Ccc
Confidence 33332222 22233445568999999999999999999999999999999999999999999999876554321 111
Q ss_pred CCCCC-CCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCC
Q 000680 1206 PPSSW-PFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM 1284 (1354)
Q Consensus 1206 ~~~~w-p~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i 1284 (1354)
++ .+ +..|.|+|+||+|+|+++. ++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|++||+|++++
T Consensus 325 ~~-~~~~~~~~i~~~~v~~~y~~~~-~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~ 402 (585)
T TIGR01192 325 AP-ELPNVKGAVEFRHITFEFANSS-QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTV 402 (585)
T ss_pred CC-CCCCCCCeEEEEEEEEECCCCC-ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhC
Confidence 11 12 2357899999999997543 599999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHhccCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1285 GLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1285 ~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
+.+++|+++++|||||.+|+||||+||.... +++|+|+++|++.+++++++.++|+|+|| .|.++|-|
T Consensus 403 ~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgG 475 (585)
T TIGR01192 403 TRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGG 475 (585)
T ss_pred CHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHH
Confidence 9999999999999999999999999997543 47899999999999999999999999997 46677754
No 64
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.4e-48 Score=491.02 Aligned_cols=410 Identities=17% Similarity=0.249 Sum_probs=338.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHH
Q 000680 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVA 1017 (1354)
Q Consensus 938 ~~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~ 1017 (1354)
+++++++.++..++.+++.++....+.+...++|.++++++++.|++||++.++|++++|+++|++.++......+..++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~ 118 (569)
T PRK10789 39 IGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLV 118 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34444455566677778788888889999999999999999999999999999999999999999999977777777777
Q ss_pred HHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHH
Q 000680 1018 ASGTELLAIIGIM-TFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRF 1096 (1354)
Q Consensus 1018 ~~~~~~i~~i~v~-~~~~~~l~l~~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f 1096 (1354)
..++..++.++++ ++++|++.++.+..++++.++.+.+.+..++..+..+...+.+.+++.|+++|+++||+|+.|+++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~ 198 (569)
T PRK10789 119 DSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQ 198 (569)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHH
Confidence 7666655555555 478998888777666776677777777777777777777888999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 1097 FQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLT-LFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYC 1175 (1354)
Q Consensus 1097 ~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~-~~~~~~~~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~ 1175 (1354)
.+++.+..++..+..........+..........+. ++...+.+.++..|.++.|.+..++.|...+..|+..+...+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~ 278 (569)
T PRK10789 199 SALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFN 278 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888777666655544444433333332222 2222233345568999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCcc
Q 000680 1176 YLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSG 1255 (1354)
Q Consensus 1176 ~le~~~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSG 1255 (1354)
+++...++.+|+.++++.++|.+.. ....+ +..|.|+|+||+|+|+++..++|+|+||+|+|||++||||+||||
T Consensus 279 ~~~~~~~a~~ri~~ll~~~~~~~~~--~~~~~---~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsG 353 (569)
T PRK10789 279 IVERGSAAYSRIRAMLAEAPVVKDG--SEPVP---EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSG 353 (569)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCC--CCCCC---CCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCC
Confidence 9999999999999999876553211 11111 235789999999999765556999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCC-CCCCHHHHHHHHHHcCCchH
Q 000680 1256 KTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKALEKCQLKTT 1334 (1354)
Q Consensus 1256 KSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~-~~~sDeeI~~AL~~a~l~~~ 1334 (1354)
||||+++|.|+|+|++|+|++||+|+++++.+++|+++++|||||++|+||||+||... .+++|+++++|++.++++++
T Consensus 354 KSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~ 433 (569)
T PRK10789 354 KSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDD 433 (569)
T ss_pred HHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999754 35799999999999999999
Q ss_pred HhcCCCCcCC----CCcccccc
Q 000680 1335 ISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1335 I~~Lp~gldt----~G~n~s~~ 1352 (1354)
+.++|+|+|| .|.++|-|
T Consensus 434 i~~lp~gl~t~~~~~g~~LSgG 455 (569)
T PRK10789 434 ILRLPQGYDTEVGERGVMLSGG 455 (569)
T ss_pred HHhCcCcccceecCCCCcCCHH
Confidence 9999999998 46677754
No 65
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1e-47 Score=494.56 Aligned_cols=468 Identities=19% Similarity=0.237 Sum_probs=341.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000680 344 RSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALP 422 (1354)
Q Consensus 344 ~~~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l~ 422 (1354)
..|++.-..|-..++++.++-+..-.+...+|+|+|..|.|++.+++... .+.......++++.++++.-...-+..++
T Consensus 884 ~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~ 963 (1381)
T KOG0054|consen 884 KGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIA 963 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHH
Confidence 34455555555555666665544444567899999999999999987544 34444444454444443333322233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 423 GLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY 502 (1354)
Q Consensus 423 gl~v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~ 502 (1354)
.+++.+++..+..++.+-.+..++--...+.-=.+..+|.|+|+-+|+.|+.|+.|.++-...-+.-.+.. .+..+.
T Consensus 964 ~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~---f~~~~a 1040 (1381)
T KOG0054|consen 964 IIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAF---FLSISA 1040 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHH---HHHHHH
Confidence 33333333333222222222222222233444566899999999999999999999887655444332211 111111
Q ss_pred HHH----HHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 000680 503 GTV----IYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHEL 578 (1354)
Q Consensus 503 ~~~----~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~ 578 (1354)
+.. +-..+-.++..+++.. ++..++..+++.|=-+++.--.+..-+..+-.....+-.-.+|.+|+.+|.+.++.
T Consensus 1041 ~RWla~Rle~ig~~~v~~~al~~-vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E 1119 (1381)
T KOG0054|consen 1041 NRWLAVRLELLGNLVVLIAALFA-VLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSE 1119 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCC
Confidence 111 1111222222222222 12222236788877777776666666666666666666678999999999984332
Q ss_pred Ccchhhhc-cc--cCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEE
Q 000680 579 NNDDVRRI-SL--QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655 (1354)
Q Consensus 579 ~~~~~~~~-~~--~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~ 655 (1354)
.+...+.. ++ -++++.|+|+|.+..|.++ .+++|+||||+|++||.+||||++|||||||+++|.++.+|.+|+|.
T Consensus 1120 ~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~ 1198 (1381)
T KOG0054|consen 1120 APLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEIL 1198 (1381)
T ss_pred CCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEE
Confidence 22112111 22 2467899999999999987 46899999999999999999999999999999999999999999999
Q ss_pred EcC-------------eEEEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCCh
Q 000680 656 LYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1354)
Q Consensus 656 ~~g-------------~i~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSg 722 (1354)
+|| +++.+||+|.+|+||+|.|+.--.++.+++..++++.|.|++.++.+|+|-+++|.|+|.|+|=
T Consensus 1199 IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~Sv 1278 (1381)
T KOG0054|consen 1199 IDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSV 1278 (1381)
T ss_pred EcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCCh
Confidence 998 5999999999999999999997778889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecCh
Q 000680 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNY 802 (1354)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~ 802 (1354)
||||-+|||||+.++++|++|||+|+++|++|-..| ++.++..-+++|||.+.|+++.+-++|||+|||+|+|+|.|+|
T Consensus 1279 GQRQLlCLARALLr~skILvLDEATAsVD~~TD~lI-Q~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP 1357 (1381)
T KOG0054|consen 1279 GQRQLLCLARALLRKSKILVLDEATASVDPETDALI-QKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSP 1357 (1381)
T ss_pred HHHHHHHHHHHHhccCCEEEEecccccCChHHHHHH-HHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCCh
Confidence 999999999999999999999999999999998764 6677778899999999999999999999999999999999999
Q ss_pred HHHHhcCc-hHHHHHH
Q 000680 803 QELLLAGT-AFEQLVN 817 (1354)
Q Consensus 803 ~~l~~~~~-~~~~~~~ 817 (1354)
++|+++++ .|.+++.
T Consensus 1358 ~~Ll~~~~S~f~~~l~ 1373 (1381)
T KOG0054|consen 1358 AELLSDKDSLFSSLLK 1373 (1381)
T ss_pred HHHHhCCcchHHHHHH
Confidence 99998754 4544543
No 66
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=4.5e-48 Score=484.52 Aligned_cols=436 Identities=15% Similarity=0.125 Sum_probs=333.2
Q ss_pred HHHHHHHhHHHHHHhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccC
Q 000680 911 GFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTP 990 (1354)
Q Consensus 911 ~~~~~~~~~~~wl~~~~~~~~~~~~~~~~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p 990 (1354)
......+..++.+..+.+.........+..++++.++..++.++..++....+.+...++|.++++++++.|++||++.+
T Consensus 29 ~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~ 108 (555)
T TIGR01194 29 AGGLAIIALLASINNAIHEENFLGQGSLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRG 108 (555)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcC
Confidence 33344455555666555432111111222344555666778888889999999999999999999999999999999999
Q ss_pred cchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000680 991 VGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTK 1070 (1354)
Q Consensus 991 ~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l~~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~ 1070 (1354)
+|++++|+++|++.++..+.. +..++..++.+++.++++++.+|.++++++.++++..++..+..+..++..+......
T Consensus 109 ~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (555)
T TIGR01194 109 AHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEE 187 (555)
T ss_pred cchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999998754 6677777788888888999999999888776666665655555555566666666677
Q ss_pred chHHHHHHHHhcchHHHHhcccHH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 000680 1071 APVMNYTAETSQGVVTIRAFNMVD--RFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYV 1148 (1354)
Q Consensus 1071 spl~s~~~Etl~Gl~tIRaf~~e~--~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~vl~~~g~l 1148 (1354)
+.+.+++.|.+.|+++||+|+.++ ...+++.+..++..+................+++..+...+..+ .....+.+
T Consensus 188 ~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 265 (555)
T TIGR01194 188 DAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALF--AAAMFASI 265 (555)
T ss_pred HHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhcCC
Confidence 889999999999999999999954 45666666666655554433322222222222221111111111 11123788
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCC--CC-CCC--CCCCCCcceEEEEEEEE
Q 000680 1149 APGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIV--ED-KRP--PSSWPFKGRIELRQLKI 1223 (1354)
Q Consensus 1149 s~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~~~~--~~-~~~--~~~wp~~G~I~f~nVsf 1223 (1354)
+.|.+..++.|+..+..|+..+...+.+++...+|.+|+.++++.+.+++... ++ ... .+.....+.|+|+||+|
T Consensus 266 t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f 345 (555)
T TIGR01194 266 DAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHM 345 (555)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEE
Confidence 99999999999999999999999999999999999999999986432221110 00 000 01112347899999999
Q ss_pred EeCCC---CCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccc
Q 000680 1224 RYRPN---APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEP 1300 (1354)
Q Consensus 1224 ~Y~~~---~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp 1300 (1354)
+|++. .+++|+|+||+|++||++||||+||||||||+++|.|+|+|++|+|++||+|+++++.+++|+++++|||||
T Consensus 346 ~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~ 425 (555)
T TIGR01194 346 NPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADF 425 (555)
T ss_pred EeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccCh
Confidence 99643 236999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCCcCCCCcccccc
Q 000680 1301 TLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSGKLFSAA 1352 (1354)
Q Consensus 1301 ~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt~G~n~s~~ 1352 (1354)
++|++|+|+|+.| +.+|++++++++.++++++++++|+||||. .++|-|
T Consensus 426 ~lf~~ti~~n~~~--~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-~~LSgG 474 (555)
T TIGR01194 426 HLFDDLIGPDEGE--HASLDNAQQYLQRLEIADKVKIEDGGFSTT-TALSTG 474 (555)
T ss_pred hhhhhhhhccccc--chhHHHHHHHHHHcCCchhhcccccccCCc-ccCCHH
Confidence 9999999999854 468999999999999999999999999985 666643
No 67
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-50 Score=453.11 Aligned_cols=391 Identities=18% Similarity=0.289 Sum_probs=314.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000680 949 AVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIG 1028 (1354)
Q Consensus 949 ~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~ 1028 (1354)
+++.-+|+++......-+.+.+--++++|+..++++|+-...+|+++.-+.+-.+.+. .+......+...++.+...++
T Consensus 273 G~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~v 351 (790)
T KOG0056|consen 273 GFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMV 351 (790)
T ss_pred cchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhh
Confidence 5667778888888888899999999999999999999999999998888877777666 455555555555555555554
Q ss_pred HH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHH
Q 000680 1029 IM-TFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDID 1107 (1354)
Q Consensus 1029 v~-~~~~~~l~l~~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~ 1107 (1354)
.. ...+|++.++++..+.+|.++......--.+.+|....+.-.-.+.-.+++-+..|+|-|++|+...++|.+.++.+
T Consensus 352 YF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Y 431 (790)
T KOG0056|consen 352 YFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKY 431 (790)
T ss_pred hhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHH
Confidence 33 35789999988888888776433222222222333333333334456788999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000680 1108 ASLFFHTNGVMEWLILRVEALQNLTLFTAALF-LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVER 1186 (1354)
Q Consensus 1108 ~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~-~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveR 1186 (1354)
++..+.....-..+...-..+..+.++...++ ++.+..+.++.|...++.+|.+++..|++|+...+..+|++.+-.||
T Consensus 432 qk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEn 511 (790)
T KOG0056|consen 432 QKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMEN 511 (790)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHH
Confidence 99888776665555544443333333333332 33445788999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcc
Q 000680 1187 IKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL 1266 (1354)
Q Consensus 1187 I~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~ 1266 (1354)
++++++.++|-. +....|+---.+|.|+|+||+|.|+|+.| ||+||||+++||+.||+||+||+||||++.+|+||
T Consensus 512 mfdllkee~eVv---d~P~a~pl~~~~G~i~fsnvtF~Y~p~k~-vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRf 587 (790)
T KOG0056|consen 512 MFDLLKEEPEVV---DLPGAPPLKVTQGKIEFSNVTFAYDPGKP-VLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRF 587 (790)
T ss_pred HHHHhhcCchhh---cCCCCCCccccCCeEEEEEeEEecCCCCc-eeecceEEecCCcEEEEECCCCCchhHHHHHHHHH
Confidence 999998666532 22112222235799999999999999876 99999999999999999999999999999999999
Q ss_pred cCCCCCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCCcCC
Q 000680 1267 VEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDS 1344 (1354)
Q Consensus 1267 ~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~gldt 1344 (1354)
||.++|+|+|||+||+++..++||++||+||||.+||++||-+||.... .++|||+.+|++.|++||-|.++|+||+|
T Consensus 588 fdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t 666 (790)
T KOG0056|consen 588 FDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNT 666 (790)
T ss_pred hhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhh
Confidence 9999999999999999999999999999999999999999999997433 47999999999999999999999999999
No 68
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-49 Score=439.19 Aligned_cols=411 Identities=23% Similarity=0.314 Sum_probs=317.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHH
Q 000680 400 SLALQLFLAIGVLFGVVGLGALPGLVLFLIC-GLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKF 478 (1354)
Q Consensus 400 ~~plqi~~~~~~L~~~lG~~~l~gl~v~~i~-~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f 478 (1354)
...+++.+..+++|+..||...+..++.+++ ..+.......-...+++..++..+.-....+.|-+-.++|.|+=|+.+
T Consensus 65 P~~~Ei~l~~vi~~~~~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e 144 (497)
T COG5265 65 PTLVEISLVAVILWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYE 144 (497)
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhh
Confidence 3457899999999998887654443333333 333222233333344444444444445678889999999999999887
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 479 KSLIESRREK----EFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPE 554 (1354)
Q Consensus 479 ~~~i~~~R~~----El~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~ 554 (1354)
.++-.+..+. +++.......++.....++...- ... ......-+..+.+|.+.....-++...+..|++.+..
T Consensus 145 ~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~~I~~~~l--~~~-m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~ 221 (497)
T COG5265 145 AVRYDHALETYEKAAIKVHVSLLVLNFGQTAIFSTGL--RVM-MTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGF 221 (497)
T ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--HHH-HhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHH
Confidence 6665444433 33221111122222222211111 111 1111112234789999988888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcchhhhcccc-CCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCC
Q 000680 555 ALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQ-KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVG 633 (1354)
Q Consensus 555 ~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~~~-~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~G 633 (1354)
....+-|+++..++..+-+..+-...+..+-.+.. ...+.|.|+|++|.|+++ +++|+++||++++|+.++|||++|
T Consensus 222 ~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~--r~iL~~isf~i~~g~tvAiVg~SG 299 (497)
T COG5265 222 SYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPR--RPILNGISFTIPLGKTVAIVGESG 299 (497)
T ss_pred HHHHHHHhhhhHHHHHHhhccchhhccCCCCccccccccceEEEEEEEeecccc--chhhcCccccccCccEEEEEeCCC
Confidence 99999999999999988775432111111111111 345679999999999875 689999999999999999999999
Q ss_pred CCHHHHHHHHhCCccCCCcEEEEcCe-------------EEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccH
Q 000680 634 AGKSSLLYAILGEIPKISGTVNLYGS-------------IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALD 699 (1354)
Q Consensus 634 sGKStLl~~i~g~~~~~~G~i~~~g~-------------i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~ 699 (1354)
+||||+++.+.+++++++|.|.++|+ ||.|||+..+||.|+..||.+|++ ..++....+.+++++.
T Consensus 300 ~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~ 379 (497)
T COG5265 300 AGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIH 379 (497)
T ss_pred CcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhh
Confidence 99999999999999999999999983 999999999999999999999987 4567788899999999
Q ss_pred HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCc
Q 000680 700 KDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV 779 (1354)
Q Consensus 700 ~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~ 779 (1354)
+.++.+|+|.+|.|||+|-.|||||||||++||++..+|+|++|||.|||||.|+++.|-. .++...+|+|.+++.|++
T Consensus 380 ~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~-~l~~~~~~rttlviahrl 458 (497)
T COG5265 380 DFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQA-ALREVSAGRTTLVIAHRL 458 (497)
T ss_pred HHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHH-HHHHHhCCCeEEEEeehh
Confidence 9999999999999999999999999999999999999999999999999999999999854 445666899999999999
Q ss_pred chhhhcCEEEEEeCCeEEEecChHHHHhcCchHHHHH
Q 000680 780 EFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLV 816 (1354)
Q Consensus 780 ~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 816 (1354)
+.+-.||.|+||++|+|+|.|+++|+++.++.|.++.
T Consensus 459 sti~~adeiivl~~g~i~erg~h~~ll~~~g~ya~mw 495 (497)
T COG5265 459 STIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEMW 495 (497)
T ss_pred hhccCCceEEEeeCCEEEecCcHHHHHHcCChHHHHh
Confidence 9999999999999999999999999999998887764
No 69
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-47 Score=440.13 Aligned_cols=404 Identities=20% Similarity=0.270 Sum_probs=337.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHH
Q 000680 943 GVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTE 1022 (1354)
Q Consensus 943 ~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~ 1022 (1354)
++++...+..|+..+..+....++-.++|.++|+++...+..-......|+++||+..|++.+|...-..+...+..++.
T Consensus 66 ~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~ 145 (573)
T COG4987 66 GLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVL 145 (573)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHH
Confidence 45667778888888899999999999999999999999999999999999999999999999999988888888888887
Q ss_pred HHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHH
Q 000680 1023 LLAIIGIMTFVTWQVLVVA-IFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYL 1101 (1354)
Q Consensus 1023 ~i~~i~v~~~~~~~l~l~~-l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~ 1101 (1354)
.+++++.+.+++|++.+.+ +.++.....+...+.+..|...+.-...+..+.+++.|-+.|....+.||+++++.+.+.
T Consensus 146 ~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~ 225 (573)
T COG4987 146 IAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALE 225 (573)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHH
Confidence 7778788888888886644 344444455666677778888888888999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCccChhHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 000680 1102 KLVDIDASLFFHTNGVMEWLILRVEALQNLTLF-TAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLS-RWYCYLAN 1179 (1354)
Q Consensus 1102 ~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~-~~~~~~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~-~~~~~le~ 1179 (1354)
+.-+...+..........|-...+.++..+.+. ..+..+.....|..+.-.+.+++..++....++.-+. ..+.++..
T Consensus 226 ~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq 305 (573)
T COG4987 226 ATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQ 305 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhH
Confidence 999999999999999999998888877776555 2333333344565553333333333344455555555 55678889
Q ss_pred HhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcc-eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHH
Q 000680 1180 YIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKG-RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTT 1258 (1354)
Q Consensus 1180 ~~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G-~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKST 1258 (1354)
...|.+|+.+..+.++|.... +.. -|..| .++++||+|+|+.+.++||+|+||++++||||||+|||||||||
T Consensus 306 ~~~Sa~Rl~~i~~q~~e~~~~--~~~----~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKST 379 (573)
T COG4987 306 VIASARRLNDILDQKPEVTFP--DEQ----TATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKST 379 (573)
T ss_pred HHHHHHHHhhhccCCcccCCC--ccc----cCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHH
Confidence 999999999998877765432 111 12222 79999999999888888999999999999999999999999999
Q ss_pred HHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCC-CCCCHHHHHHHHHHcCCchHHhc
Q 000680 1259 LISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKALEKCQLKTTISS 1337 (1354)
Q Consensus 1259 L~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~-~~~sDeeI~~AL~~a~l~~~I~~ 1337 (1354)
++++|.|-|+|++|+|..+|+|++.++-+++|+.|++++|.++||+||+|+||.-- .++||||+|+||++++|++++++
T Consensus 380 llqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~ 459 (573)
T COG4987 380 LLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLES 459 (573)
T ss_pred HHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999522 24899999999999999999999
Q ss_pred CCCCcCC----CCcccccc
Q 000680 1338 LPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1338 Lp~gldt----~G~n~s~~ 1352 (1354)
.|+||+| +|.++|-|
T Consensus 460 ~p~gl~t~lge~G~~LSGG 478 (573)
T COG4987 460 APDGLNTWLGEGGRRLSGG 478 (573)
T ss_pred ChhhhhchhccCCCcCCch
Confidence 9999999 68888854
No 70
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.9e-46 Score=468.20 Aligned_cols=430 Identities=15% Similarity=0.151 Sum_probs=336.2
Q ss_pred HHHHHHHhHHHHHHhhhcCC----CCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 000680 911 GFVGLQAAATYWLAYAIQIP----KIT-SGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLF 985 (1354)
Q Consensus 911 ~~~~~~~~~~~wl~~~~~~~----~~~-~~~~~~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~f 985 (1354)
+...+.+..++.+...++.- ... ...++.+++++.++..++.+++.++....+.+....++.++++++++.|+.
T Consensus 17 ~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~- 95 (544)
T TIGR01842 17 VINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSATLR- 95 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-
Confidence 33444555566555554421 111 112334445555667778888889999999999999999999999999984
Q ss_pred ccccCcchHHHHHhhcHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 986 FDSTPVGRILTRLSSDLSILDFDIPF-SIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIR 1064 (1354)
Q Consensus 986 Fd~~p~G~IlnRfs~Di~~id~~l~~-~l~~~~~~~~~~i~~i~v~~~~~~~l~l~~l~~~~~~~~i~~~y~~~sr~l~r 1064 (1354)
..|..++++++|++.++..+.. .+..++..++.++ .++++++++|++.++++..++++.++..++.+..++..+
T Consensus 96 ----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~~~~ 170 (544)
T TIGR01842 96 ----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVGLALLNNRATKKPLK 170 (544)
T ss_pred ----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3367789999999999987766 4555555555444 345678889998777665555555555555555566666
Q ss_pred HHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Q 000680 1065 INGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLT-LFTAALFLVLI 1143 (1354)
Q Consensus 1065 l~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~-~~~~~~~~vl~ 1143 (1354)
...+..+...+++.|+++|+++||+|+.++.+.+++.+..++..+.................++..+. +++.++.++++
T Consensus 171 ~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 250 (544)
T TIGR01842 171 EATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLA 250 (544)
T ss_pred HHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677788899999999999999999999999999999888776666554444443333333333322 22223334455
Q ss_pred cCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEE
Q 000680 1144 PRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKI 1223 (1354)
Q Consensus 1144 ~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf 1223 (1354)
..|.+++|.+.+++.|...+..|+..+...+.+++....+.+|+.++++.++|.+. ....+ +..+.|+|+||+|
T Consensus 251 ~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~---~~~~~i~~~~v~~ 324 (544)
T TIGR01842 251 IDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP---AMPLP---EPEGHLSVENVTI 324 (544)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC---CCCCC---CCCCeEEEEEEEE
Confidence 68999999999999999999999999999999999999999999999987665321 11111 2357899999999
Q ss_pred EeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceeccccccc
Q 000680 1224 RYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLF 1303 (1354)
Q Consensus 1224 ~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF 1303 (1354)
+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+++|++|+|.+||+|+++++.+.+|+++++|||||++|
T Consensus 325 ~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf 404 (544)
T TIGR01842 325 VPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELF 404 (544)
T ss_pred EcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccc
Confidence 99765557999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1304 RGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1304 ~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
+||+|+||..++ +++|+|+++|++.++++++++++|+|+|| .|.++|-|
T Consensus 405 ~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgG 458 (544)
T TIGR01842 405 PGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGG 458 (544)
T ss_pred cccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHH
Confidence 999999997554 48999999999999999999999999999 47788754
No 71
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-46 Score=437.16 Aligned_cols=413 Identities=18% Similarity=0.206 Sum_probs=353.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHH
Q 000680 936 ILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVF 1015 (1354)
Q Consensus 936 ~~~~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~ 1015 (1354)
.+++..++..++..+..+.+.......+.++...+|.++++++.+.+..|-+..|+|+....++.-++.++..+...+..
T Consensus 41 ~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq 120 (559)
T COG4988 41 PLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQ 120 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677788888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHH
Q 000680 1016 VAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDR 1095 (1354)
Q Consensus 1016 ~~~~~~~~i~~i~v~~~~~~~l~l~~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~ 1095 (1354)
++.+.+..+..++.+++.+|...++.+..+|+...+.......++...+..-.+...+.+||-+.++|+.|+|+|++.+.
T Consensus 121 ~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~ 200 (559)
T COG4988 121 MFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEA 200 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHH
Confidence 99999999999999999999987766554444444444455556666666777788899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcC-CccChhHHHHHHHHHHHHHHHHHHHHHH
Q 000680 1096 FFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLV-LIPR-GYVAPGLVGLSLSYAFTLTGTQVFLSRW 1173 (1354)
Q Consensus 1096 f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~v-l~~~-g~ls~g~~gl~l~ya~~l~~~l~~l~~~ 1173 (1354)
..++..+.-.+..+..+...+..---+..+|++..+.+..+++.+. .+.. |.++....-+++..+.-+..|+..+...
T Consensus 201 ~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~ 280 (559)
T COG4988 201 TEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSF 280 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999888888888877776666666667788888887776666543 2334 7888888888889999999999999999
Q ss_pred HHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCC
Q 000680 1174 YCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTG 1253 (1354)
Q Consensus 1174 ~~~le~~~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTG 1253 (1354)
|..-.++..+.|.+..+++.|.+.+... ......|-...+|+.+|++++|+++. ++++|+||+++|||++||||+||
T Consensus 281 fH~~~~g~aa~d~i~~~l~~~~~~~~~~--~~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talvG~SG 357 (559)
T COG4988 281 FHAAAAGEAAADKLFTLLESPVATPGSG--EKAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALVGASG 357 (559)
T ss_pred HHHHhhhhhHHHHHHHHhcCCCCCCCCc--cccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEEEEECCCC
Confidence 9999999999999999998777644211 11123333345677779999997665 69999999999999999999999
Q ss_pred ccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCc
Q 000680 1254 SGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLK 1332 (1354)
Q Consensus 1254 SGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~ 1332 (1354)
||||||+++|.||.+|++|+|.+||+|+++++.+++|+++++|||+|++|+|||||||.-++ +.|||||++|++++++.
T Consensus 358 aGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~ 437 (559)
T COG4988 358 AGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLL 437 (559)
T ss_pred CCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHH
Confidence 99999999999999999999999999999999999999999999999999999999996444 37999999999999999
Q ss_pred hHHhcCCCCcCC----CCcccccc
Q 000680 1333 TTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1333 ~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
||+.. |+|+|| +|.+.|.|
T Consensus 438 ~~v~~-p~GLdt~ige~G~~LSgG 460 (559)
T COG4988 438 EFVPK-PDGLDTVIGEGGAGLSGG 460 (559)
T ss_pred HhhcC-CCcccchhccCCCCCCHH
Confidence 99999 999998 68888865
No 72
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-47 Score=482.76 Aligned_cols=206 Identities=20% Similarity=0.350 Sum_probs=167.8
Q ss_pred CcEEEEeeEEEeCCCC-CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000680 593 RSVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------- 658 (1354)
..++++|++++|+... ..++|+||||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 4689999999996422 34799999999999999999999999999999999999999999987643
Q ss_pred --------------eEEEEeCCC--CC-CCCcHHHHHhcCC----CCCH----HHHHHHHHHhccHHHHhcCCCCCcccc
Q 000680 659 --------------SIAYVSQTS--WI-QSGSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEI 713 (1354)
Q Consensus 659 --------------~i~yv~Q~~--~~-~~~ti~eni~~g~----~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~i 713 (1354)
.||||+|+| -+ ...||+||+.++. ..+. ++..++++..++.+. ....
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~ 162 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTIL 162 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHH
Confidence 489999998 34 4579999998752 1222 233344444444210 1123
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEE
Q 000680 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVL 791 (1354)
Q Consensus 714 g~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l 791 (1354)
..+..+|||||||||+||||++.+|++|||||||++||+.+.+.+.+.+..... .|+|+|+||||++.+.. ||+|++|
T Consensus 163 ~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl 242 (623)
T PRK10261 163 SRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVM 242 (623)
T ss_pred hCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEe
Confidence 467789999999999999999999999999999999999999998876555443 38999999999999876 8999999
Q ss_pred eCCeEEEecChHHHH
Q 000680 792 EGGQITQSGNYQELL 806 (1354)
Q Consensus 792 ~~G~i~~~g~~~~l~ 806 (1354)
++|++++.|+++++.
T Consensus 243 ~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 243 YQGEAVETGSVEQIF 257 (623)
T ss_pred eCCeecccCCHHHhh
Confidence 999999999887764
No 73
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=3.6e-46 Score=503.66 Aligned_cols=190 Identities=21% Similarity=0.282 Sum_probs=154.8
Q ss_pred CCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCc----cCCCcEEEEcC------------eEEEEeCCCCC-CCC
Q 000680 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI----PKISGTVNLYG------------SIAYVSQTSWI-QSG 672 (1354)
Q Consensus 610 ~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~----~~~~G~i~~~g------------~i~yv~Q~~~~-~~~ 672 (1354)
+++|+|+|+++++||+++|+|||||||||||++|+|.. +|.+|+|.++| .++|++|++.+ .+.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence 46899999999999999999999999999999999986 46899999987 28999998755 567
Q ss_pred cHHHHHhcCCC----------CCHHHHH-----HHHHHhccHHHHhcCCCCCcccccC-CCCCCChHHHHHHHHHHHHhc
Q 000680 673 SIRDNILYGKP----------MDKARYD-----KAIKACALDKDINNFDHGDLTEIGQ-RGLNLSGGQKQRIQLARAVYN 736 (1354)
Q Consensus 673 ti~eni~~g~~----------~~~~~~~-----~~~~~~~l~~~l~~l~~gd~t~ig~-~g~~LSgGQkqRv~lARal~~ 736 (1354)
||+||+.|+.. ..++.+. .+++..+|. +--+|.+|+ ....|||||||||+||||++.
T Consensus 154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-------~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~ 226 (1394)
T TIGR00956 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLS-------HTRNTKVGNDFVRGVSGGERKRVSIAEASLG 226 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcc-------cccCceeCCCcCCCCCcccchHHHHHHHHHh
Confidence 99999988521 2222221 223333332 222456654 467899999999999999999
Q ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCc-chhh-hcCEEEEEeCCeEEEecChHHHH
Q 000680 737 DADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQV-EFLS-EVDRILVLEGGQITQSGNYQELL 806 (1354)
Q Consensus 737 ~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~-~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 806 (1354)
+|++++|||||++||+.++..+.+.+.+... .|+|+|+++||+ +.+. .+|+|++|++|++++.|+.+++.
T Consensus 227 ~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 227 GAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 9999999999999999999999876665544 489999999997 4554 48999999999999999998874
No 74
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-47 Score=476.18 Aligned_cols=197 Identities=23% Similarity=0.341 Sum_probs=163.0
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~ 659 (1354)
.++++|++++|+. +++++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| .
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 4889999999963 4699999999999999999999999999999999999999999999876 3
Q ss_pred EEEEeCCCCCC-CCcHHHHHhcCCC-----C-----CH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHH
Q 000680 660 IAYVSQTSWIQ-SGSIRDNILYGKP-----M-----DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1354)
Q Consensus 660 i~yv~Q~~~~~-~~ti~eni~~g~~-----~-----~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQ 724 (1354)
++|++|++.++ +.|++||+.++.. . +. ++..+.++.+++.+ ....+..+|||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgG~ 150 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV-----------DLDEKVANLSISH 150 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCC-----------CcccchhhCCHHH
Confidence 89999998664 5699999987531 0 11 12222333333321 1235678999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChH
Q 000680 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1354)
Q Consensus 725 kqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1354)
||||+||||++.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|++|||++++.. ||++++|++|++++.|+++
T Consensus 151 ~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (510)
T PRK09700 151 KQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVS 230 (510)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchh
Confidence 999999999999999999999999999999999988766555568999999999999876 8999999999998776544
Q ss_pred H
Q 000680 804 E 804 (1354)
Q Consensus 804 ~ 804 (1354)
+
T Consensus 231 ~ 231 (510)
T PRK09700 231 D 231 (510)
T ss_pred h
Confidence 3
No 75
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-47 Score=472.67 Aligned_cols=198 Identities=21% Similarity=0.334 Sum_probs=161.1
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC--CCcEEEEcC-------------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK--ISGTVNLYG------------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~--~~G~i~~~g------------- 658 (1354)
.++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 5899999999963 4699999999999999999999999999999999999986 899999876
Q ss_pred -eEEEEeCCCCCC-CCcHHHHHhcCCCC------CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 659 -SIAYVSQTSWIQ-SGSIRDNILYGKPM------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 659 -~i~yv~Q~~~~~-~~ti~eni~~g~~~------~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
.++|++|++.++ +.|++||+.++... +.+...+.+ .+-++.+...+ ....+..+||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~--~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRA-----QKLLAQLKLDI--NPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHH-----HHHHHHcCCCC--CcccchhhCCHHHHHHHHH
Confidence 289999998664 56999999986421 221111111 11222222211 1235678999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecC
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1354)
|||++.+|+++||||||++||+...+.+.+.+.....+|+|+|++|||++++.. ||++++|++|++++.|+
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 226 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRP 226 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecc
Confidence 999999999999999999999999999988666554568999999999999876 89999999999987654
No 76
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.8e-47 Score=475.44 Aligned_cols=204 Identities=20% Similarity=0.352 Sum_probs=164.4
Q ss_pred cEEEEeeEEEeCCC-CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC---------
Q 000680 594 SVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~-~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-----~~G~i~~~g--------- 658 (1354)
-++++|++++|+.. ...++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 124799999999999999999999999999999999999986 799998765
Q ss_pred --------eEEEEeCCCC--C-CCCcHHHHHhcCC----CCCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCC
Q 000680 659 --------SIAYVSQTSW--I-QSGSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1354)
Q Consensus 659 --------~i~yv~Q~~~--~-~~~ti~eni~~g~----~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~ 719 (1354)
++||++|+|. + ...|++||+.++. ..+. ++..++++.+++.+.. .....+..+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------~~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA--------KRLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhhCCcc
Confidence 3899999984 3 3469999986421 1221 2344455555553210 012356789
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEE
Q 000680 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1354)
Q Consensus 720 LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1354)
|||||||||+||||++.+|+++||||||++||+...+++.+.+.+... .|+|+|+||||++.+.. ||+|++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999876655443 38999999999999876 8999999999999
Q ss_pred EecChHHH
Q 000680 798 QSGNYQEL 805 (1354)
Q Consensus 798 ~~g~~~~l 805 (1354)
+.|+++++
T Consensus 237 ~~g~~~~~ 244 (529)
T PRK15134 237 EQNRAATL 244 (529)
T ss_pred EeCCHHHH
Confidence 88876654
No 77
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.5e-46 Score=444.34 Aligned_cols=206 Identities=25% Similarity=0.387 Sum_probs=167.9
Q ss_pred cEEEEeeEEEeCCCCC-CCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCC----CcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELA-IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI----SGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~-~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~----~G~i~~~g---------- 658 (1354)
-++++|.+..|..... .++++||||+|.+||++||+|.+||||||+.++|+|.+++. +|+|.++|
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5889999988876532 25999999999999999999999999999999999999987 89998877
Q ss_pred -------eEEEEeCCCC---CCCCcHHHHHh----cCCCC-CH---HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCC
Q 000680 659 -------SIAYVSQTSW---IQSGSIRDNIL----YGKPM-DK---ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1354)
Q Consensus 659 -------~i~yv~Q~~~---~~~~ti~eni~----~g~~~-~~---~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~L 720 (1354)
.|||++|+|+ -+-.||.+-|. ..... .+ ++..+.++..++.+... . +..+..|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~-------~--~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPER-------R--DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhh-------h--ccCCccc
Confidence 4999999985 23357766654 22222 12 23333444444433222 1 4678899
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEE
Q 000680 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1354)
Q Consensus 721 SgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1354)
||||||||.||+|+..+|+++|+||||+|||+.++++|.+.+.... ..|.++|+||||+..+.+ ||||+||++|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999998766544 468899999999999987 89999999999999
Q ss_pred ecChHHHHhc
Q 000680 799 SGNYQELLLA 808 (1354)
Q Consensus 799 ~g~~~~l~~~ 808 (1354)
.|+.++++++
T Consensus 236 ~G~~~~i~~~ 245 (539)
T COG1123 236 TGPTEEILSN 245 (539)
T ss_pred ecCHHHHHhc
Confidence 9999998754
No 78
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=7.2e-47 Score=469.28 Aligned_cols=193 Identities=22% Similarity=0.399 Sum_probs=157.9
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC--CCcEEEEcC--------------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK--ISGTVNLYG-------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~--~~G~i~~~g-------------- 658 (1354)
++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 688999999963 4699999999999999999999999999999999999987 799999876
Q ss_pred eEEEEeCCCCCC-CCcHHHHHhcCCCC-------CHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHH
Q 000680 659 SIAYVSQTSWIQ-SGSIRDNILYGKPM-------DKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1354)
Q Consensus 659 ~i~yv~Q~~~~~-~~ti~eni~~g~~~-------~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkq 726 (1354)
.++|++|++.++ +.|++||+.++... +.+ +.+++++.+++.... ...+..+|||||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~q 148 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN----------VTRPVGDYGGGQQQ 148 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc----------ccCchhhCCHHHHH
Confidence 389999998664 56999999886421 111 122223333221100 02346789999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 727 Rv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
||+||||++.+|+++||||||++||+...+.+.+.+.....+|+|+|++|||++++.. ||+|++|++|++++.|
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~ 223 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATK 223 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeec
Confidence 9999999999999999999999999999999988665555568999999999999876 8999999999987543
No 79
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-46 Score=464.92 Aligned_cols=206 Identities=18% Similarity=0.319 Sum_probs=161.8
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCCCC-C
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQ-S 671 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~~~~~-~ 671 (1354)
|+++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +++|++|++.++ +
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 78 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEE 78 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCC
Confidence 688999999963 4699999999999999999999999999999999999999999999976 699999997654 5
Q ss_pred CcHHHHHhcCCC-C------------------C-HHHHHHHHH----------HhccHHHHhcCCCCCcccccCCCCCCC
Q 000680 672 GSIRDNILYGKP-M------------------D-KARYDKAIK----------ACALDKDINNFDHGDLTEIGQRGLNLS 721 (1354)
Q Consensus 672 ~ti~eni~~g~~-~------------------~-~~~~~~~~~----------~~~l~~~l~~l~~gd~t~ig~~g~~LS 721 (1354)
.|++||+.++.. . + ...+.+..+ .....+-++.+...+. .......+||
T Consensus 79 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~~LS 157 (530)
T PRK15064 79 FTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE-QHYGLMSEVA 157 (530)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh-HhcCchhhcC
Confidence 699999987531 0 0 000000000 0011122333322110 0124567999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeE-EEe
Q 000680 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI-TQS 799 (1354)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i-~~~ 799 (1354)
|||||||+||||++.+|+++||||||++||+.+.+++.+.+. ..++|||+||||++++.. ||+|++|++|++ ++.
T Consensus 158 gGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~ 234 (530)
T PRK15064 158 PGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLN---ERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYP 234 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH---hCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEec
Confidence 999999999999999999999999999999999999877543 247899999999999876 899999999999 478
Q ss_pred cChHHHHh
Q 000680 800 GNYQELLL 807 (1354)
Q Consensus 800 g~~~~l~~ 807 (1354)
|+++++++
T Consensus 235 g~~~~~~~ 242 (530)
T PRK15064 235 GNYDEYMT 242 (530)
T ss_pred CCHHHHHH
Confidence 99988764
No 80
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.8e-45 Score=420.30 Aligned_cols=401 Identities=21% Similarity=0.305 Sum_probs=307.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHH
Q 000680 936 ILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVF 1015 (1354)
Q Consensus 936 ~~~~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~ 1015 (1354)
..+..|++..+++.+|..++.+++.+...++-++...+.+++.+++.++||.+..+|.+.+++.+-...+...+...+..
T Consensus 75 ~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~ 154 (591)
T KOG0057|consen 75 ALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFN 154 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHH
Confidence 45677888899999999999999999999999999999999999999999999999999999888888888877777766
Q ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccchHHHHHHHHhcchHHHHhcccH
Q 000680 1016 VAASGTELLAIIGIMT-FVTWQVLVVAIFAMVAVRFVQRYYIATARE-LIRINGTTKAPVMNYTAETSQGVVTIRAFNMV 1093 (1354)
Q Consensus 1016 ~~~~~~~~i~~i~v~~-~~~~~l~l~~l~~~~~~~~i~~~y~~~sr~-l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e 1093 (1354)
++..++.+......+. -..+.+.++.+..+..|..+ ..+....|. .++....+.....+..-|++.+-.+||+||.|
T Consensus 155 i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~-Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE 233 (591)
T KOG0057|consen 155 IIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAF-TIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNE 233 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhee-EEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccH
Confidence 6666665554443333 23444444444433333221 111122222 22233344455667888999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCccChhHHHHHHHHHHHHHHHHHHHHH
Q 000680 1094 DRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF-LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSR 1172 (1354)
Q Consensus 1094 ~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~-~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~ 1172 (1354)
++..++|+..+.+.-+...........+.+.-..+.++....+..+ +--+..+.++.|.+.+..+...++..+++.+..
T Consensus 234 ~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~ 313 (591)
T KOG0057|consen 234 EYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGS 313 (591)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHH
Confidence 9999999999988777665544443333332222222211111111 111345788999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCC
Q 000680 1173 WYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRT 1252 (1354)
Q Consensus 1173 ~~~~le~~~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrT 1252 (1354)
.+.++-.++.-.+-.+...+.... ..+...|. -+..|.|+|+||+|.|.|+. +||||+||+|++||||||||++
T Consensus 314 vyr~~~q~l~Dm~~~~~l~~~~~~---i~~~~~~i--~~~~~~I~F~dV~f~y~~k~-~iL~gvsf~I~kGekVaIvG~n 387 (591)
T KOG0057|consen 314 VYRELRQALTDMRTLFILLEVDED---IQEAALPI--ELFGGSIEFDDVHFSYGPKR-KVLKGVSFTIPKGEKVAIVGSN 387 (591)
T ss_pred HHHHHHHHHHhHHHHHhhhhhhhh---hhhccCCc--ccCCCcEEEEeeEEEeCCCC-ceecceeEEecCCCEEEEECCC
Confidence 999998888776665543321111 11111122 23457899999999998765 4999999999999999999999
Q ss_pred CccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCC
Q 000680 1253 GSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQL 1331 (1354)
Q Consensus 1253 GSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l 1331 (1354)
||||||++++|+||+| .+|+|+|||+||++++++.+|+.||+||||..||++||-+||...+ ..||||+.++||++++
T Consensus 388 GsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~ 466 (591)
T KOG0057|consen 388 GSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGL 466 (591)
T ss_pred CCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCc
Confidence 9999999999999999 9999999999999999999999999999999999999999997554 4799999999999999
Q ss_pred chHHhcCCCCcCC
Q 000680 1332 KTTISSLPNKLDS 1344 (1354)
Q Consensus 1332 ~~~I~~Lp~gldt 1344 (1354)
||.|+++|+||+|
T Consensus 467 hd~i~~l~~GY~T 479 (591)
T KOG0057|consen 467 HDVISRLPDGYQT 479 (591)
T ss_pred HHHHHhccccchh
Confidence 9999999999999
No 81
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.7e-46 Score=463.82 Aligned_cols=198 Identities=24% Similarity=0.417 Sum_probs=168.3
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~ 659 (1354)
.++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 5899999999963 4699999999999999999999999999999999999999999999876 3
Q ss_pred EEEEeCCCCCC-CCcHHHHHhcCCCCC---HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh
Q 000680 660 IAYVSQTSWIQ-SGSIRDNILYGKPMD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 660 i~yv~Q~~~~~-~~ti~eni~~g~~~~---~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1354)
++|++|++.++ +.|++||+.++.... +++..+.++..++... ...+..+|||||||||+||||++
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLD-----------LDSSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcc-----------ccCChhhCCHHHHHHHHHHHHHH
Confidence 89999998765 569999999875322 2334445555544322 23567789999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHH
Q 000680 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1354)
.+|+++||||||++||+...+.+.+.+.....+|+|+|++|||++++.. ||+|++|++|++++.|+++++
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence 9999999999999999999999988766555568999999999999876 899999999999988876664
No 82
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.3e-46 Score=466.56 Aligned_cols=193 Identities=20% Similarity=0.334 Sum_probs=160.4
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~ 659 (1354)
-++++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4889999999963 4699999999999999999999999999999999999999999999876 3
Q ss_pred EEEEeCCCCCC-CCcHHHHHhcCCCC-------CHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 000680 660 IAYVSQTSWIQ-SGSIRDNILYGKPM-------DKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1354)
Q Consensus 660 i~yv~Q~~~~~-~~ti~eni~~g~~~-------~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1354)
++|++|++.++ +.|++||+.++... +.. +..++++.+++ ++. ...+..+||||||||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l---------~~~--~~~~~~~LSgG~~qr 149 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNL---------RFS--SDKLVGELSIGEQQM 149 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCC---------CCC--ccCchhhCCHHHHHH
Confidence 89999998654 57999999986421 121 22223333332 221 235678999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 728 v~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++|||++.+.. ||+|++|++|++++.|
T Consensus 150 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~ 223 (501)
T PRK10762 150 VEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAER 223 (501)
T ss_pred HHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEec
Confidence 999999999999999999999999999999987665554568899999999999876 8999999999998754
No 83
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.7e-46 Score=464.74 Aligned_cols=197 Identities=23% Similarity=0.326 Sum_probs=166.8
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i 660 (1354)
-++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 3 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 3789999999963 3599999999999999999999999999999999999999999998865 27
Q ss_pred EEEeCCCCC---------CCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000680 661 AYVSQTSWI---------QSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1354)
Q Consensus 661 ~yv~Q~~~~---------~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1354)
+|++|++.. +..|++||+.++.. ++++.+++++..++.+..+ .+..+||||||||++||
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la 147 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITALLD-----------RRFKYLSTGETRKTLLC 147 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHhhhh-----------CCcccCCHHHHHHHHHH
Confidence 999998642 14689999876521 2445666777766654332 56678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHH
Q 000680 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1354)
||++.+|+++||||||++||+...+++.+.+.....+|+|+|++||+++.+.. ||+|++|++|+++..|+++++
T Consensus 148 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 222 (490)
T PRK10938 148 QALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEI 222 (490)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999988776555568999999999999876 899999999999988876654
No 84
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.8e-43 Score=474.21 Aligned_cols=202 Identities=24% Similarity=0.354 Sum_probs=172.7
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eE
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~i 660 (1354)
..|+++|+++.|+++ ++++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .+
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcE
Confidence 468999999999632 35799999999999999999999999999999999999999999999987 38
Q ss_pred EEEeCCCCCC-CCcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 000680 661 AYVSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1354)
Q Consensus 661 ~yv~Q~~~~~-~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1354)
|||||++.++ ..|++||+.|+.. .. +++.++.++.++|.+.. .++..+||||||||++|||
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~-----------~~~~~~LSGGqKQRLsLAr 1074 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKR-----------NEEAQDLSGGMQRKLSVAI 1074 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHH
Confidence 9999998765 5699999987421 12 22344555555554322 3667899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 733 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
|++.+|+++|||||||+||+..++.+++.+.+. .+|+|+|++||+++.+.. ||||++|++|+++..|+.+++.+
T Consensus 1075 ALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l-~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257 1075 AFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY-RSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHH-hCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999998866554 468999999999999876 89999999999999999998864
No 85
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2e-46 Score=467.16 Aligned_cols=195 Identities=26% Similarity=0.391 Sum_probs=160.4
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCc--cCCCcEEEEc---------------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLY--------------- 657 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~--~~~~G~i~~~--------------- 657 (1354)
++++|++++|+. +++|+|+||++.+||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 468999999963 46999999999999999999999999999999999997 7999999875
Q ss_pred --------C-----------------------eEEEEeCC-CCC-CCCcHHHHHhcCCC---CC----HHHHHHHHHHhc
Q 000680 658 --------G-----------------------SIAYVSQT-SWI-QSGSIRDNILYGKP---MD----KARYDKAIKACA 697 (1354)
Q Consensus 658 --------g-----------------------~i~yv~Q~-~~~-~~~ti~eni~~g~~---~~----~~~~~~~~~~~~ 697 (1354)
| .++|++|+ +.+ ...|++||+.++.. .+ .++..++++.++
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 1 28999997 444 45799999987521 22 124445566666
Q ss_pred cHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEc
Q 000680 698 LDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVT 776 (1354)
Q Consensus 698 l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvt 776 (1354)
+.+.+ .++..+|||||||||+||||++.+|+++||||||++||+++.+++.+.+.+... .|+|||+||
T Consensus 158 l~~~~-----------~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivt 226 (520)
T TIGR03269 158 LSHRI-----------THIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226 (520)
T ss_pred Chhhh-----------hcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 64332 256678999999999999999999999999999999999999999876655433 489999999
Q ss_pred CCcchhhh-cCEEEEEeCCeEEEecChH
Q 000680 777 HQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1354)
Q Consensus 777 H~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1354)
||++.+.. ||+|++|++|++++.|+++
T Consensus 227 Hd~~~~~~~~d~i~~l~~G~i~~~g~~~ 254 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGTPD 254 (520)
T ss_pred CCHHHHHHhcCEEEEEeCCEEeeecCHH
Confidence 99999876 8999999999997665433
No 86
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.6e-45 Score=461.08 Aligned_cols=206 Identities=26% Similarity=0.352 Sum_probs=163.2
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCCCCC
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQS 671 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~~~~~~ 671 (1354)
-++++|++++|+. ++++|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.+++ ++||++|+|.+++
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 83 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDP 83 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCC
Confidence 5899999999962 24699999999999999999999999999999999999999999999864 6999999998764
Q ss_pred -CcHHHHHhcCCC-CC---------------H-H-------HHHHHHHH----------hccHHHHhcCCCCCcccccCC
Q 000680 672 -GSIRDNILYGKP-MD---------------K-A-------RYDKAIKA----------CALDKDINNFDHGDLTEIGQR 716 (1354)
Q Consensus 672 -~ti~eni~~g~~-~~---------------~-~-------~~~~~~~~----------~~l~~~l~~l~~gd~t~ig~~ 716 (1354)
.|++||+.++.. +. . + ++.++.+. ..+...++.+... ....+
T Consensus 84 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~---~~~~~ 160 (556)
T PRK11819 84 EKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP---PWDAK 160 (556)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC---cccCc
Confidence 699999987531 00 0 0 00001000 0111222332221 12467
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCe
Q 000680 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1354)
Q Consensus 717 g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1354)
..+|||||||||+||||++.+|+++|||||||+||+.+.+++.+.+. .. +.|+|+||||++++.. ||+|++|++|+
T Consensus 161 ~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~-~~--~~tviiisHd~~~~~~~~d~i~~l~~g~ 237 (556)
T PRK11819 161 VTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLH-DY--PGTVVAVTHDRYFLDNVAGWILELDRGR 237 (556)
T ss_pred hhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHH-hC--CCeEEEEeCCHHHHHhhcCeEEEEeCCE
Confidence 78999999999999999999999999999999999999999876543 32 2599999999999987 79999999999
Q ss_pred EE-EecChHHHHh
Q 000680 796 IT-QSGNYQELLL 807 (1354)
Q Consensus 796 i~-~~g~~~~l~~ 807 (1354)
++ +.|+++++.+
T Consensus 238 i~~~~g~~~~~~~ 250 (556)
T PRK11819 238 GIPWEGNYSSWLE 250 (556)
T ss_pred EEEecCCHHHHHH
Confidence 86 7899888754
No 87
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-46 Score=459.36 Aligned_cols=192 Identities=22% Similarity=0.350 Sum_probs=160.3
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~ 659 (1354)
.++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 5889999999963 3699999999999999999999999999999999999999999999865 3
Q ss_pred EEEEeCCCCCC-CCcHHHHHhcCCC------CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 000680 660 IAYVSQTSWIQ-SGSIRDNILYGKP------MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1354)
Q Consensus 660 i~yv~Q~~~~~-~~ti~eni~~g~~------~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1354)
++|++|++.++ +.|++||+.++.. .+. ++..++++.+++.. ....+..+||||||||+
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv 149 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI-----------DPDTPLKYLSIGQRQMV 149 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCC-----------CcCCchhhCCHHHHHHH
Confidence 89999998765 4699999998631 122 12333333333321 12356789999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEe
Q 000680 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQS 799 (1354)
Q Consensus 729 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~ 799 (1354)
+||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++|||++++.. ||+|++|++|+++..
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~ 221 (501)
T PRK11288 150 EIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVAT 221 (501)
T ss_pred HHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 99999999999999999999999999999988766554568999999999999876 899999999998753
No 88
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=3.5e-45 Score=458.11 Aligned_cols=206 Identities=27% Similarity=0.353 Sum_probs=166.0
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCCCC-
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQ- 670 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~~~~~- 670 (1354)
-++++|++++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++ .|||++|+|+++
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 81 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDP 81 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCC
Confidence 4789999999962 24699999999999999999999999999999999999999999999874 699999999875
Q ss_pred CCcHHHHHhcCCCC------------------CH---------HHHHHHHHHhccH-------HHHhcCCCCCcccccCC
Q 000680 671 SGSIRDNILYGKPM------------------DK---------ARYDKAIKACALD-------KDINNFDHGDLTEIGQR 716 (1354)
Q Consensus 671 ~~ti~eni~~g~~~------------------~~---------~~~~~~~~~~~l~-------~~l~~l~~gd~t~ig~~ 716 (1354)
+.|++||+.++... +. .++.++++.++.. +-++.+... ....+
T Consensus 82 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~ 158 (552)
T TIGR03719 82 TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP---PWDAD 158 (552)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC---cccCc
Confidence 56999999875310 01 1223333333321 122222221 12467
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCe
Q 000680 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1354)
Q Consensus 717 g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1354)
..+|||||||||+||||++.+|+++||||||++||+++.+++.+.+.. . ++|+|+|||+++++.. ||++++|++|+
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~-~--~~tvIiisHd~~~~~~~~d~v~~l~~g~ 235 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQE-Y--PGTVVAVTHDRYFLDNVAGWILELDRGR 235 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHh-C--CCeEEEEeCCHHHHHhhcCeEEEEECCE
Confidence 789999999999999999999999999999999999999998775433 2 3599999999999987 79999999999
Q ss_pred EE-EecChHHHHh
Q 000680 796 IT-QSGNYQELLL 807 (1354)
Q Consensus 796 i~-~~g~~~~l~~ 807 (1354)
++ +.|+++++.+
T Consensus 236 i~~~~g~~~~~~~ 248 (552)
T TIGR03719 236 GIPWEGNYSSWLE 248 (552)
T ss_pred EEEecCCHHHHHH
Confidence 76 7899888764
No 89
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-45 Score=456.05 Aligned_cols=190 Identities=26% Similarity=0.344 Sum_probs=157.1
Q ss_pred EeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------eEEEE
Q 000680 598 QEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SIAYV 663 (1354)
Q Consensus 598 ~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~i~yv 663 (1354)
+|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 2 ~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 2 SNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 578888863 4699999999999999999999999999999999999999999999876 38999
Q ss_pred eCCCCC-CCCcHHHHHhcCCC------CCHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 000680 664 SQTSWI-QSGSIRDNILYGKP------MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1354)
Q Consensus 664 ~Q~~~~-~~~ti~eni~~g~~------~~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1354)
+|++.+ ++.|++||+.++.. .+.+ +.+++++.+++. .....+..+|||||||||+|||
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv~lA~ 147 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDID-----------IDPRAKVATLSVSQMQMIEIAK 147 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCC-----------CCccCchhhCCHHHHHHHHHHH
Confidence 999865 46799999987631 1221 122222222221 1223567899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecC
Q 000680 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1354)
Q Consensus 733 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1354)
|++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++++.. ||++++|++|++++.|+
T Consensus 148 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~ 217 (491)
T PRK10982 148 AFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQP 217 (491)
T ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999988766555568999999999999876 89999999999987654
No 90
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.1e-42 Score=436.03 Aligned_cols=392 Identities=16% Similarity=0.137 Sum_probs=298.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHH
Q 000680 945 STASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELL 1024 (1354)
Q Consensus 945 ~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i 1024 (1354)
.++..++.+++.++....+.+...++|.++++++++.|++||+++++|++++|+++|++.+...+. .+..++..++.++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i 136 (547)
T PRK10522 58 LLLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTL 136 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHH
Confidence 333345667788888889999999999999999999999999999999999999999999987654 4667777888888
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccH---HHHHHHHH
Q 000680 1025 AIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMV---DRFFQNYL 1101 (1354)
Q Consensus 1025 ~~i~v~~~~~~~l~l~~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e---~~f~~~~~ 1101 (1354)
+.++++++++|+++++++..+++..++..++.+..++..+...+..+...+++.|.++|+.+|+ ++.+ +.+.+++.
T Consensus 137 ~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~ 215 (547)
T PRK10522 137 GSAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYE 215 (547)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHh
Confidence 8889999999999988877777776676667666666666667778899999999999999995 5443 45667777
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 1102 KLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIP-RGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANY 1180 (1354)
Q Consensus 1102 ~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~vl~~-~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~ 1180 (1354)
+..+...+.................++. .+..++..+... .+..+.+.++++..+...+..|+..+...+.+++..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~ 292 (547)
T PRK10522 216 PDAQEYRHHIIRADTFHLSAVNWSNIMM---LGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSA 292 (547)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666555443332221111111111111 111111111110 112233444444455556778999999999999999
Q ss_pred hhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHH
Q 000680 1181 IISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLI 1260 (1354)
Q Consensus 1181 ~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~ 1260 (1354)
..+.+|+.++.+.|+|++. ++..+. |..+.|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+
T Consensus 293 ~~a~~ri~~l~~~~~~~~~--~~~~~~---~~~~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~ 366 (547)
T PRK10522 293 QVAFNKLNKLALAPYKAEF--PRPQAF---PDWQTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLA 366 (547)
T ss_pred HHHHHHHHHHhcccccccc--cccccc---CcCceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHHH
Confidence 9999999998765543221 111111 123689999999999743 4699999999999999999999999999999
Q ss_pred HHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCC
Q 000680 1261 SALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPN 1340 (1354)
Q Consensus 1261 ~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~ 1340 (1354)
++|.|+|+|++|+|++||+|+++++.+++|+++++|||||++|+||+++| . ...+|++++++++++++.+++. .|+
T Consensus 367 ~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n-~--~~~~~~~~~~~~~~~~l~~~~~-~~~ 442 (547)
T PRK10522 367 MLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE-G--KPANPALVEKWLERLKMAHKLE-LED 442 (547)
T ss_pred HHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc-c--CchHHHHHHHHHHHcCCchhhh-ccc
Confidence 99999999999999999999999999999999999999999999999999 2 3568999999999999998876 466
Q ss_pred CcCCCCcccccc
Q 000680 1341 KLDSSGKLFSAA 1352 (1354)
Q Consensus 1341 gldt~G~n~s~~ 1352 (1354)
|.. .|.|+|-|
T Consensus 443 ~~~-~G~~LSgG 453 (547)
T PRK10522 443 GRI-SNLKLSKG 453 (547)
T ss_pred cCC-CCCCCCHH
Confidence 543 46777754
No 91
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-45 Score=426.99 Aligned_cols=264 Identities=25% Similarity=0.358 Sum_probs=222.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhhccccCCCCcEEEEeeEEEeCCC
Q 000680 528 APLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPE 607 (1354)
Q Consensus 528 ~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~ 607 (1354)
++++|+++|+++++|+.+..|+..+|..... .+|++.|+..+|.+...+.. ..+.++.|+++|++++|..+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~nls~~y~~~ 93 (329)
T PRK14257 23 NELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKE--DFNHANVFEIRNFNFWYMNR 93 (329)
T ss_pred chhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccC--CCCcCceEEEEeeEEEecCC
Confidence 6799999999999999999999988876543 56999998877654321111 12344689999999999753
Q ss_pred CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC---------------eEEEEeCCC
Q 000680 608 LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG---------------SIAYVSQTS 667 (1354)
Q Consensus 608 ~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~-----~~~G~i~~~g---------------~i~yv~Q~~ 667 (1354)
..++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++| +++|+||+|
T Consensus 94 -~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~ 172 (329)
T PRK14257 94 -TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKP 172 (329)
T ss_pred -CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCC
Confidence 3569999999999999999999999999999999999996 5799988654 599999999
Q ss_pred CCCCCcHHHHHhcCCCC---C-HH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 000680 668 WIQSGSIRDNILYGKPM---D-KA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1354)
Q Consensus 668 ~~~~~ti~eni~~g~~~---~-~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ 739 (1354)
|++++|++|||.|+..+ + ++ .+.++++.|++.++++ +.+++++.+||||||||++||||++++|+
T Consensus 173 ~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~-------~~~~~~~~~LSgGqkqRl~LARAl~~~p~ 245 (329)
T PRK14257 173 TPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVK-------DDLDKAGNALSGGQQQRLCIARAIALEPE 245 (329)
T ss_pred ccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhh-------hhhhCCcccCCHHHHHHHHHHHHHHhCCC
Confidence 99999999999986432 1 22 3677788888766553 56789999999999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhcC
Q 000680 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 740 illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
|+||||||+|||+++.+++. +++....+++|+|+|||+++++.. ||+|++|++|+|++.|+++++....
T Consensus 246 IlLLDEPts~LD~~~~~~i~-~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~~ 315 (329)
T PRK14257 246 VLLMDEPTSALDPIATAKIE-ELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHP 315 (329)
T ss_pred EEEEeCCcccCCHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCC
Confidence 99999999999999999965 455555667999999999999987 9999999999999999999987543
No 92
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-44 Score=401.85 Aligned_cols=386 Identities=18% Similarity=0.267 Sum_probs=320.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHh
Q 000680 956 SFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMT-FVT 1034 (1354)
Q Consensus 956 ~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~-~~~ 1034 (1354)
..++...+..+.+.+--+.|.|++.+.+.|.-+..+|-+..-...-..-++..+.+.+...+..++.+....+++. ..+
T Consensus 3 ~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~ 82 (497)
T COG5265 3 DRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYG 82 (497)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcc
Confidence 3455667777888888889999999999999888777655444444445555566666666666666655555544 468
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHH
Q 000680 1035 WQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHT 1114 (1354)
Q Consensus 1035 ~~l~l~~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~ 1114 (1354)
|+++++.+..+++|.++.......--..+|....+.+...+.-.+++-+-.|+|.||.|+.+..+|.+.++.+.++....
T Consensus 83 ~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~ 162 (497)
T COG5265 83 WWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKV 162 (497)
T ss_pred cHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHH
Confidence 99998888888887776554444444566777778888888999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcC
Q 000680 1115 NGVMEWLILRVEALQNLTLFTAALF-LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHI 1193 (1354)
Q Consensus 1115 ~~~~~wl~~~l~~l~~~~~~~~~~~-~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~ 1193 (1354)
...-.|+.+.-..+........... ...+..|.++.|.+.....|..+++.|++.+...+.++.++....|+.++.++.
T Consensus 163 ~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~ 242 (497)
T COG5265 163 HVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDV 242 (497)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhcc
Confidence 8888888776555544332222222 233467899999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCC-CcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCC
Q 000680 1194 PPEPPAIVEDKRPPSSWP-FKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272 (1354)
Q Consensus 1194 ~~E~~~~~~~~~~~~~wp-~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G 1272 (1354)
+.|.. +....|+-|| ..|.|.|+||+|.|.|..| +|+|+||++++|+|+||||++|+||||+..+|+||||+++|
T Consensus 243 ~~~v~---d~pda~~L~~~~~g~v~F~~V~F~y~~~r~-iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG 318 (497)
T COG5265 243 EAEVS---DAPDAPPLWPVRLGAVAFINVSFAYDPRRP-ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG 318 (497)
T ss_pred chhhc---cCCCCccccccccceEEEEEEEeeccccch-hhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc
Confidence 77643 3333456675 4689999999999998875 99999999999999999999999999999999999999999
Q ss_pred EEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCCcCCC
Q 000680 1273 SILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSS 1345 (1354)
Q Consensus 1273 ~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~gldt~ 1345 (1354)
+|.|||.||+++..+.||+.||+||||.+||++|+..|+...+ ..|+||+++|++.|++++||+++|+||||+
T Consensus 319 ~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~ 392 (497)
T COG5265 319 SITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTG 392 (497)
T ss_pred eEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcc
Confidence 9999999999999999999999999999999999999997544 479999999999999999999999999994
No 93
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-43 Score=447.73 Aligned_cols=206 Identities=22% Similarity=0.328 Sum_probs=156.9
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCCCCCC
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSG 672 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~~~~~~~ 672 (1354)
|.++|++++|+. +++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++| .++|++|++.....
T Consensus 2 i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~ 78 (638)
T PRK10636 2 IVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQ 78 (638)
T ss_pred EEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCC
Confidence 678999999964 4699999999999999999999999999999999999999999999987 58999997544445
Q ss_pred cHHHHHhcCCC-C--------------CHHHHHHHHH----------HhccHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 000680 673 SIRDNILYGKP-M--------------DKARYDKAIK----------ACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1354)
Q Consensus 673 ti~eni~~g~~-~--------------~~~~~~~~~~----------~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1354)
|+.+++.-+.. + +...|..... ......-++.+...+ .....+..+||||||||
T Consensus 79 ~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~-~~~~~~~~~LSgGerqR 157 (638)
T PRK10636 79 PALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSN-EQLERPVSDFSGGWRMR 157 (638)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCc-hhhcCchhhcCHHHHHH
Confidence 66666542210 0 0001100000 001112233332210 11235678999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEE-EecChHHH
Q 000680 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSGNYQEL 805 (1354)
Q Consensus 728 v~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~g~~~~l 805 (1354)
|+||||++.+||+|||||||++||+.+..++.+.+.. . +.|+|+||||++++.. ||+|++|++|++. +.|+|+++
T Consensus 158 v~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~-~--~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 158 LNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKS-Y--QGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSF 234 (638)
T ss_pred HHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHh-C--CCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHH
Confidence 9999999999999999999999999999998765433 2 4699999999999986 8999999999996 68888887
Q ss_pred Hh
Q 000680 806 LL 807 (1354)
Q Consensus 806 ~~ 807 (1354)
..
T Consensus 235 ~~ 236 (638)
T PRK10636 235 EV 236 (638)
T ss_pred HH
Confidence 53
No 94
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=2e-43 Score=427.83 Aligned_cols=206 Identities=28% Similarity=0.420 Sum_probs=166.6
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCCCC-
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQ- 670 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~~~~~- 670 (1354)
.|.++|++++|+ ++++++|+|+++.+|+++||||+|||||||||++|.|+..|++|+|...+ ++||++|++...
T Consensus 3 ~i~~~~ls~~~g---~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~ 79 (530)
T COG0488 3 MITLENLSLAYG---DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDP 79 (530)
T ss_pred eEEEeeeEEeeC---CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCC
Confidence 478899999995 45799999999999999999999999999999999999999999999987 799999998876
Q ss_pred CCcHHHHHhcCCCCC---HHHHHHHHH------------------H-------hccHHHHhcCCCCCcccccCCCCCCCh
Q 000680 671 SGSIRDNILYGKPMD---KARYDKAIK------------------A-------CALDKDINNFDHGDLTEIGQRGLNLSG 722 (1354)
Q Consensus 671 ~~ti~eni~~g~~~~---~~~~~~~~~------------------~-------~~l~~~l~~l~~gd~t~ig~~g~~LSg 722 (1354)
..||+|.+..+...- ..+++.... . ......+..+...+. ..+..+|||
T Consensus 80 ~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~---~~~~~~LSG 156 (530)
T COG0488 80 EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE---DRPVSSLSG 156 (530)
T ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc---cCchhhcCH
Confidence 459999998774310 111221111 0 112222333322221 356789999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEE-Eec
Q 000680 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSG 800 (1354)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~g 800 (1354)
|||.||+|||||..+||+|||||||++||..+.+++-+.+. ..+| |+|+||||.+||.. |++|+-+++|++. +.|
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~--~~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~G 233 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLK--RYPG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKG 233 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH--hCCC-cEEEEeCCHHHHHHHhhheEEecCCceeEecC
Confidence 99999999999999999999999999999999999866543 3456 99999999999998 7999999999885 789
Q ss_pred ChHHHHhc
Q 000680 801 NYQELLLA 808 (1354)
Q Consensus 801 ~~~~l~~~ 808 (1354)
+|+.+.+.
T Consensus 234 ny~~~~~~ 241 (530)
T COG0488 234 NYSSYLEQ 241 (530)
T ss_pred CHHHHHHH
Confidence 99988754
No 95
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-44 Score=375.27 Aligned_cols=202 Identities=26% Similarity=0.424 Sum_probs=177.4
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~ 659 (1354)
-|+++|++.+|+. ..+|+|||++|++||.++|+||+||||||||++|.|+.+|++|+|.++| +
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 4789999999984 4699999999999999999999999999999999999999999999998 3
Q ss_pred EEEEeCCCCCC-CCcHHHHHhcCC----CCC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 660 IAYVSQTSWIQ-SGSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 660 i~yv~Q~~~~~-~~ti~eni~~g~----~~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
+|+|+|+..+| ..|+.|||..+. ... +++..+.++..+|.+..+ ..+.+|||||||||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~-----------~yP~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKAD-----------AYPAQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhh-----------hCccccCcHHHHHHHH
Confidence 78999998875 679999999863 222 234445666667766555 4556899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhcC
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
||||..+|+++|+|||||||||+....+.+-.......|.|.|+|||++.|.++ ||||+.|++|+|+++|+++++..+.
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999999999999999999999999999887666667789999999999999998 7999999999999999999998664
No 96
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=8.5e-43 Score=442.30 Aligned_cols=204 Identities=24% Similarity=0.371 Sum_probs=157.4
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe--EEEEeCCCCC-C
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--IAYVSQTSWI-Q 670 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~--i~yv~Q~~~~-~ 670 (1354)
.++++|++++|+. .++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++|. ++|++|.+.. .
T Consensus 3 ~l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~ 79 (635)
T PRK11147 3 LISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNV 79 (635)
T ss_pred EEEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCC
Confidence 3789999999963 46999999999999999999999999999999999999999999999874 7999998643 3
Q ss_pred CCcHHHHHhcCCCC-------------------CHH---HHHHH---HH-------HhccHHHHhcCCCCCcccccCCCC
Q 000680 671 SGSIRDNILYGKPM-------------------DKA---RYDKA---IK-------ACALDKDINNFDHGDLTEIGQRGL 718 (1354)
Q Consensus 671 ~~ti~eni~~g~~~-------------------~~~---~~~~~---~~-------~~~l~~~l~~l~~gd~t~ig~~g~ 718 (1354)
.+++.+++..+... ..+ .+..+ ++ ......-++.+... ...+..
T Consensus 80 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~----~~~~~~ 155 (635)
T PRK11147 80 EGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD----PDAALS 155 (635)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC----CCCchh
Confidence 46787776432100 000 00000 00 00111222222221 135678
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEE
Q 000680 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1354)
Q Consensus 719 ~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1354)
+|||||||||+||||++.+|+++||||||++||+.+.+++.+.+.. . +.|+|+||||++++.. ||+|++|++|+++
T Consensus 156 ~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~-~--~~tvlivsHd~~~l~~~~d~i~~L~~G~i~ 232 (635)
T PRK11147 156 SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKT-F--QGSIIFISHDRSFIRNMATRIVDLDRGKLV 232 (635)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHh-C--CCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 9999999999999999999999999999999999999998765543 2 3599999999999987 8999999999997
Q ss_pred -EecChHHHHh
Q 000680 798 -QSGNYQELLL 807 (1354)
Q Consensus 798 -~~g~~~~l~~ 807 (1354)
+.|+|+++..
T Consensus 233 ~~~g~~~~~~~ 243 (635)
T PRK11147 233 SYPGNYDQYLL 243 (635)
T ss_pred EecCCHHHHHH
Confidence 5698888764
No 97
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=9.7e-41 Score=448.61 Aligned_cols=197 Identities=23% Similarity=0.321 Sum_probs=156.4
Q ss_pred CCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEEcC----------eEEEEeCCCCC-CCCcHH
Q 000680 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYG----------SIAYVSQTSWI-QSGSIR 675 (1354)
Q Consensus 610 ~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~---~G~i~~~g----------~i~yv~Q~~~~-~~~ti~ 675 (1354)
..+|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++| .++|++|++.+ .+.||+
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 257 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVK 257 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHH
Confidence 46899999999999999999999999999999999999998 99999987 38999999754 567999
Q ss_pred HHHhcCCC-------CC-------HH---------HHHHHHHHhc---------cHHHHhcC--CCCCcccccC-CCCCC
Q 000680 676 DNILYGKP-------MD-------KA---------RYDKAIKACA---------LDKDINNF--DHGDLTEIGQ-RGLNL 720 (1354)
Q Consensus 676 eni~~g~~-------~~-------~~---------~~~~~~~~~~---------l~~~l~~l--~~gd~t~ig~-~g~~L 720 (1354)
||+.|+.. ++ ++ +.+..++++. .+.-++.+ .+-.+|.+|. ....|
T Consensus 258 EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rgl 337 (1470)
T PLN03140 258 ETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGI 337 (1470)
T ss_pred HHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCC
Confidence 99988521 10 11 1111111111 11223333 3334677765 45789
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcc-hh-hhcCEEEEEeCCeEE
Q 000680 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVE-FL-SEVDRILVLEGGQIT 797 (1354)
Q Consensus 721 SgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~-~l-~~~d~i~~l~~G~i~ 797 (1354)
||||||||+|||+++.+|++++|||||+|||+.+...+.+.+.+... .|+|+|+++|++. .+ ..+|+|++|++|+++
T Consensus 338 SGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~iv 417 (1470)
T PLN03140 338 SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIV 417 (1470)
T ss_pred CcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEE
Confidence 99999999999999999999999999999999999999876655433 5899999999973 44 458999999999999
Q ss_pred EecChHHHH
Q 000680 798 QSGNYQELL 806 (1354)
Q Consensus 798 ~~g~~~~l~ 806 (1354)
+.|+.+++.
T Consensus 418 y~G~~~~~~ 426 (1470)
T PLN03140 418 YQGPRDHIL 426 (1470)
T ss_pred EeCCHHHHH
Confidence 999999876
No 98
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=6.5e-41 Score=424.23 Aligned_cols=205 Identities=23% Similarity=0.322 Sum_probs=148.5
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCCCCCCC
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~i~yv~Q~~~~~~~ 672 (1354)
..|.++|++++|+. .++|+|+||+|++|++++|+|+|||||||||++|+|+.. .| +--+|+|+|++|++.-.+.
T Consensus 176 ~~I~i~nls~~y~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~--~g-~p~~g~I~~~~Q~~~g~~~ 249 (718)
T PLN03073 176 KDIHMENFSISVGG---RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAI--DG-IPKNCQILHVEQEVVGDDT 249 (718)
T ss_pred eeEEEceEEEEeCC---CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CC-CCCCCEEEEEeccCCCCCC
Confidence 45999999999963 359999999999999999999999999999999999741 13 2223578889997543344
Q ss_pred cHHHHHhcCC-----------------------------------CCCH----HHHHHHHHHhcc----------HHHHh
Q 000680 673 SIRDNILYGK-----------------------------------PMDK----ARYDKAIKACAL----------DKDIN 703 (1354)
Q Consensus 673 ti~eni~~g~-----------------------------------~~~~----~~~~~~~~~~~l----------~~~l~ 703 (1354)
|+.|.++-.. ..+. +++.++.+..++ ..-+.
T Consensus 250 t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~ 329 (718)
T PLN03073 250 TALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILA 329 (718)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 5543322100 0011 122222222211 11122
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhh
Q 000680 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS 783 (1354)
Q Consensus 704 ~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~ 783 (1354)
.+...+ .....+..+||||||||++||||++.+|+++||||||++||+...+++.+.+.. . ++|+|+||||++++.
T Consensus 330 ~lgl~~-~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~-~--~~tviivsHd~~~l~ 405 (718)
T PLN03073 330 GLSFTP-EMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLK-W--PKTFIVVSHAREFLN 405 (718)
T ss_pred HCCCCh-HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH-c--CCEEEEEECCHHHHH
Confidence 222110 112345678999999999999999999999999999999999999998775533 2 679999999999998
Q ss_pred h-cCEEEEEeCCeEE-EecChHHHHh
Q 000680 784 E-VDRILVLEGGQIT-QSGNYQELLL 807 (1354)
Q Consensus 784 ~-~d~i~~l~~G~i~-~~g~~~~l~~ 807 (1354)
. ||+|++|++|++. +.|+++++..
T Consensus 406 ~~~d~i~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 406 TVVTDILHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred HhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 7 8999999999996 7888887643
No 99
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=9.7e-40 Score=414.62 Aligned_cols=450 Identities=10% Similarity=-0.005 Sum_probs=346.0
Q ss_pred HHHHHHHhccc---hhHHHHHHHHHHHHHHHHHhHHHHHHhhhcCC--CCcc------hHHHHHHHHHHHHHHHHHHHHH
Q 000680 888 PFMDYLNVSKG---MSLLCLGVLAQSGFVGLQAAATYWLAYAIQIP--KITS------GILIGVYAGVSTASAVFVYFRS 956 (1354)
Q Consensus 888 ~y~~y~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~~--~~~~------~~~~~iy~~l~~~~~i~~~~~~ 956 (1354)
.+++|+++.+. +..+++.+++.++...+.+..+++.+..++.- .... ..++.+++++.++..+..++..
T Consensus 81 ~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~~~ 160 (659)
T TIGR00954 81 FLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYLLK 160 (659)
T ss_pred HHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555544332 22344455555556667777788777665531 1111 1122233344455556666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HhH
Q 000680 957 FFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTF-VTW 1035 (1354)
Q Consensus 957 ~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~-~~~ 1035 (1354)
.+......+..+++|++.+++....++.|||+ ++|++++|+++|++.+...+...+..++..++.+++.+++++. .+|
T Consensus 161 ~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~ 239 (659)
T TIGR00954 161 ELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGS 239 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 77777888899999999999999999999997 8999999999999999999999999999999998888887776 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHH
Q 000680 1036 QVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTN 1115 (1354)
Q Consensus 1036 ~l~l~~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~ 1115 (1354)
.+.++++...++..++.+++.+..+++.+..+...+...+.++|.++|+.+||+|+.++.+.+++.+..++..+......
T Consensus 240 ~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~ 319 (659)
T TIGR00954 240 VGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLII 319 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888888888899999999999999999999999999999999999999999999999999999988888887777
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHH-H-HHhc----CCccChhHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHhhH
Q 000680 1116 GVMEWLILRVEALQNLT--LFTAALF-L-VLIP----RGYVAPGLVGL-SLSY---AFTLTGTQVFLSRWYCYLANYIIS 1183 (1354)
Q Consensus 1116 ~~~~wl~~~l~~l~~~~--~~~~~~~-~-vl~~----~g~ls~g~~gl-~l~y---a~~l~~~l~~l~~~~~~le~~~~s 1183 (1354)
....++....+++.... .+...+. . ++.. .|.++.|.... +++| ..++..++..++..+.+++...++
T Consensus 320 ~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~ 399 (659)
T TIGR00954 320 KFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGF 399 (659)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777666664321 1111111 1 2222 26788886433 5555 566789999999999999999999
Q ss_pred HHHHHHhhcCCCCCCC------CCCCCC--------C------CCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCC
Q 000680 1184 VERIKQFMHIPPEPPA------IVEDKR--------P------PSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEG 1243 (1354)
Q Consensus 1184 veRI~e~~~~~~E~~~------~~~~~~--------~------~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~G 1243 (1354)
.+|+.++++.++|... ..++.. + .......|.|+++||+++|+++ +++|+|+||+|++|
T Consensus 400 ~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~G 478 (659)
T TIGR00954 400 TARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPSG 478 (659)
T ss_pred HHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECCC
Confidence 9999999975433110 000000 0 0000134679999999999644 35999999999999
Q ss_pred cEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCC--------C
Q 000680 1244 TRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL--------G 1315 (1354)
Q Consensus 1244 ekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~--------~ 1315 (1354)
|++||||++|||||||+++|.|+++|++|+|.+|+ |+++++|||+|.+|++|+|+||... .
T Consensus 479 e~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 547 (659)
T TIGR00954 479 NHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRR 547 (659)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhcc
Confidence 99999999999999999999999999999999875 7899999999999999999999521 2
Q ss_pred CCCHHHHHHHHHHcCCchHHhcCCCCcCCC---Cccccc
Q 000680 1316 LYSDDEIWKALEKCQLKTTISSLPNKLDSS---GKLFSA 1351 (1354)
Q Consensus 1316 ~~sDeeI~~AL~~a~l~~~I~~Lp~gldt~---G~n~s~ 1351 (1354)
..++++++++++.+++++++.. |.|+|+. |.++|-
T Consensus 548 ~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~~~~~LSg 585 (659)
T TIGR00954 548 GLSDKDLEQILDNVQLTHILER-EGGWSAVQDWMDVLSG 585 (659)
T ss_pred CCCHHHHHHHHHHcCCHHHHhh-cCCcccccccccCCCH
Confidence 3578999999999999999987 9999985 345554
No 100
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-42 Score=373.47 Aligned_cols=204 Identities=26% Similarity=0.386 Sum_probs=176.4
Q ss_pred EEEEeeEEEeCCC--CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000680 595 VKIQEGNFSWDPE--LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~--~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------- 658 (1354)
|+++++++.|... ...++|+|+||+|++||+.+|+|.+|+|||||+++|.++.+|++|+|.++|
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999863 235689999999999999999999999999999999999999999999998
Q ss_pred --eEEEEeCCCCCCC-CcHHHHHhcCCCC---C-H---HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 000680 659 --SIAYVSQTSWIQS-GSIRDNILYGKPM---D-K---ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1354)
Q Consensus 659 --~i~yv~Q~~~~~~-~ti~eni~~g~~~---~-~---~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1354)
+||+++|++.+.+ .||.|||.|+.+. + + +|..+.++..+|.+.. +..+.+|||||||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~-----------~~yP~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKA-----------DRYPAQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhh-----------ccCchhcCcchhhHH
Confidence 4999999998876 7999999997542 2 2 2344444445555332 366789999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHH
Q 000680 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806 (1354)
Q Consensus 729 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 806 (1354)
+|||||+.+|+|+|.|||||||||++.+.|.+.+.+.. .-|-|+++|||.++.++. |||+.||++|+++|+|+..++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999988665543 348899999999999988 8999999999999999999998
Q ss_pred hcC
Q 000680 807 LAG 809 (1354)
Q Consensus 807 ~~~ 809 (1354)
.++
T Consensus 231 ~~P 233 (339)
T COG1135 231 ANP 233 (339)
T ss_pred cCc
Confidence 765
No 101
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=9.2e-41 Score=370.13 Aligned_cols=207 Identities=23% Similarity=0.423 Sum_probs=164.4
Q ss_pred CcEEEEeeEEEeCCC-CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC--------
Q 000680 593 RSVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG-------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~-~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-----~~G~i~~~g-------- 658 (1354)
.-+.++|.+.++... ....++++|||+|.+||.+|+||.+|||||-..++|+|+++. -+|+|.++|
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 356788877766532 345789999999999999999999999999999999999975 478998877
Q ss_pred ---------eEEEEeCCCCC-CC--CcHHHHH----hcCCCCC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCC
Q 000680 659 ---------SIAYVSQTSWI-QS--GSIRDNI----LYGKPMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718 (1354)
Q Consensus 659 ---------~i~yv~Q~~~~-~~--~ti~eni----~~g~~~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~ 718 (1354)
+|+.++|+|.- .| .||..-| ....... +++..+.++..++.+-- ..+...+.
T Consensus 85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~--------~rl~~yPH 156 (534)
T COG4172 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPE--------KRLDAYPH 156 (534)
T ss_pred HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchh--------hhhhhCCc
Confidence 59999999953 22 3665444 3333332 34445555555554321 23456788
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEcCCcchhhh-cCEEEEEeCCeE
Q 000680 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1354)
Q Consensus 719 ~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1354)
+|||||||||.||.||..+||++|-||||.|||..+..+|.+.+.... ..|-.++++|||+..+++ ||||+||.+|++
T Consensus 157 eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~i 236 (534)
T COG4172 157 ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEI 236 (534)
T ss_pred ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEE
Confidence 999999999999999999999999999999999999999987655443 347899999999999987 899999999999
Q ss_pred EEecChHHHHh
Q 000680 797 TQSGNYQELLL 807 (1354)
Q Consensus 797 ~~~g~~~~l~~ 807 (1354)
+|.|+.+++..
T Consensus 237 vE~~~t~~lF~ 247 (534)
T COG4172 237 VETGTTETLFA 247 (534)
T ss_pred eecCcHHHHhh
Confidence 99998777753
No 102
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=5e-42 Score=361.29 Aligned_cols=203 Identities=30% Similarity=0.407 Sum_probs=175.7
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~ 661 (1354)
|+++|+++.|.+ +.+++|+||+|++||+++++||+||||||+|++|.++++|++|+|.++| +||
T Consensus 2 I~~~nvsk~y~~---~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYGN---KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcCC---ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 789999999983 5699999999999999999999999999999999999999999999998 599
Q ss_pred EEeCCCCC-CCCcHHHHHhcCC---CCCHH----HHHHHHHHhccHH-HHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 000680 662 YVSQTSWI-QSGSIRDNILYGK---PMDKA----RYDKAIKACALDK-DINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1354)
Q Consensus 662 yv~Q~~~~-~~~ti~eni~~g~---~~~~~----~~~~~~~~~~l~~-~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1354)
||-|+.-+ ++.||.|||..-. .++++ +.++.++..+|++ +.. .+.+.+|||||+|||.+||
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~----------~RyP~eLSGGQQQRVGv~R 148 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYA----------DRYPHELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHh----------hcCchhcCcchhhHHHHHH
Confidence 99999765 5789999998742 24544 4555666666654 222 2567899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchh-hhcCEEEEEeCCeEEEecChHHHHhcCc
Q 000680 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLAGT 810 (1354)
Q Consensus 733 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1354)
||+.+|+|+|+||||+||||-+++.+-+++..... -++|+|+||||+++. +.+|||.+|++|+|++.+++++++.++.
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pa 228 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPA 228 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCcc
Confidence 99999999999999999999999998877665443 489999999999885 5599999999999999999999998754
No 103
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3.4e-41 Score=382.74 Aligned_cols=222 Identities=27% Similarity=0.363 Sum_probs=201.7
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i 660 (1354)
.|+++|++++|+++ ..++|+|+||+|++||+++|+|+||||||||+++|.|+++ .+|+|.++| ++
T Consensus 2 ~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 2 QMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred eEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 58999999999743 3469999999999999999999999999999999999998 799999987 48
Q ss_pred EEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000680 661 AYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1354)
Q Consensus 661 ~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1354)
+|+||+|+++++|++||+....+++.++..++++.+++...+..+|.+.+|.+++.|.+||||||||++||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999964334667788899999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcCchHHHHHHH
Q 000680 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818 (1354)
Q Consensus 741 llLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 818 (1354)
+||||||++||+++.+.+.+.+.. ..+++|+|+|||+++.+..||+|++|++|++++.|++++++++++.|.+++..
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~-~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 236 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQ-AFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISP 236 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHH-hcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhh
Confidence 999999999999999987765543 34689999999999998889999999999999999999999877777777654
No 104
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-41 Score=364.82 Aligned_cols=190 Identities=33% Similarity=0.453 Sum_probs=165.0
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------eEEEEeC
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQ 665 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------~i~yv~Q 665 (1354)
.+.+++++.+|+. ..+|+|+||+|++||+++|+|||||||||||++|+|+.+|++|+|.++| .+|||+|
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ 79 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQ 79 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEec
Confidence 5789999999985 5799999999999999999999999999999999999999999999987 5899999
Q ss_pred CCCC-CCCcHHHHHhcCCCCC-------HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcC
Q 000680 666 TSWI-QSGSIRDNILYGKPMD-------KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1354)
Q Consensus 666 ~~~~-~~~ti~eni~~g~~~~-------~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~ 737 (1354)
++-+ +-.||+|||.+|.+.. +++..+.++..+|...-+ ..+.+|||||||||+||||++.+
T Consensus 80 ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~-----------~~P~qLSGGMrQRVaiARAL~~~ 148 (248)
T COG1116 80 EDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFED-----------KYPHQLSGGMRQRVAIARALATR 148 (248)
T ss_pred cCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhh-----------cCccccChHHHHHHHHHHHHhcC
Confidence 9865 4689999999986532 235666677777765444 45678999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhh-hcCEEEEEeC--CeEE
Q 000680 738 ADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEG--GQIT 797 (1354)
Q Consensus 738 ~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~--G~i~ 797 (1354)
|+++||||||+|||+.|+.++.+.+.+.+. .++|+++||||+++.- -+|||++|.+ |+|.
T Consensus 149 P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 149 PKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred CCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 999999999999999999999888877654 5789999999998865 4899999998 5553
No 105
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-41 Score=367.34 Aligned_cols=201 Identities=32% Similarity=0.531 Sum_probs=175.4
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------eEEE
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAY 662 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g----------~i~y 662 (1354)
..|+++|++++|+.+ ++|+||||+|++|++++|+||||||||||+|+|+|+++|.+|+|.+.| +|||
T Consensus 3 ~~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgY 79 (254)
T COG1121 3 PMIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGY 79 (254)
T ss_pred cEEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEE
Confidence 358999999999853 599999999999999999999999999999999999999999999876 4999
Q ss_pred EeCCC---CCCCCcHHHHHhcCCCC-----------CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 000680 663 VSQTS---WIQSGSIRDNILYGKPM-----------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1354)
Q Consensus 663 v~Q~~---~~~~~ti~eni~~g~~~-----------~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1354)
|||.. |-++.||+|-+..|... |.+..+++++..++.+..+ ++..+|||||+|||
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~-----------r~i~~LSGGQ~QRV 148 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD-----------RQIGELSGGQKQRV 148 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhC-----------CcccccCcHHHHHH
Confidence 99964 67889999999987432 3467778888888774322 55678999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 729 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
-|||||+++||+++|||||+|+|+.+++.+++.+.....+|+||++||||++.+.. +|+|+.|+ +++...|++++...
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~~ 227 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLT 227 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhccC
Confidence 99999999999999999999999999999998766666679999999999998765 89999995 56889999999875
Q ss_pred c
Q 000680 808 A 808 (1354)
Q Consensus 808 ~ 808 (1354)
.
T Consensus 228 ~ 228 (254)
T COG1121 228 E 228 (254)
T ss_pred H
Confidence 4
No 106
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=3.5e-41 Score=368.86 Aligned_cols=201 Identities=26% Similarity=0.414 Sum_probs=177.0
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i 660 (1354)
.++++|++|+|+. +++++|+||++++||+++|+|||||||||||++|+|.++|.+|+|.++| .+
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 3689999999983 5799999999999999999999999999999999999999999999998 59
Q ss_pred EEEeCCCCC-CCCcHHHHHhcCCC-----------CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 000680 661 AYVSQTSWI-QSGSIRDNILYGKP-----------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1354)
Q Consensus 661 ~yv~Q~~~~-~~~ti~eni~~g~~-----------~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1354)
||+||++.. ++.||+|-+.+|+. .|++...++++.+++.+..+ +...+|||||||||
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~-----------r~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLAD-----------RPVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhc-----------CcccccChhHHHHH
Confidence 999999754 57799999999852 13345666688887766443 45678999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEcCCcchhh-hcCEEEEEeCCeEEEecChHHHH
Q 000680 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELL 806 (1354)
Q Consensus 729 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 806 (1354)
.|||||+++|+++|||||||+||....-++++.+.+.. .+|+|+|+|+||++... .||++++|++|+++.+|+++|++
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999998877665 56899999999999865 59999999999999999999987
Q ss_pred hc
Q 000680 807 LA 808 (1354)
Q Consensus 807 ~~ 808 (1354)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 54
No 107
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-41 Score=346.97 Aligned_cols=206 Identities=27% Similarity=0.408 Sum_probs=179.5
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCC-----cEEEEcC---------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS-----GTVNLYG--------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~-----G~i~~~g--------- 658 (1354)
..++++|.++.|+. ..+|+|||++|++++++|++||+||||||||+++.++.+..+ |+|.++|
T Consensus 6 ~~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 56899999999984 469999999999999999999999999999999999887765 8998887
Q ss_pred ------eEEEEeCCCCCCCCcHHHHHhcCCCC---C----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 ------SIAYVSQTSWIQSGSIRDNILYGKPM---D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 ------~i~yv~Q~~~~~~~ti~eni~~g~~~---~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
+||.|+|.|..|++||+|||.+|... . ++..++.++.++|.+..+. .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 49999999999999999999998532 1 2456677777888765542 23467889999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
||+|||||+.-+|+|+|||||||||||.+..+| ++++..+.++-|+|+|||+++...+ +|+...+.+|+++|.|+.++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kI-EeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~ 234 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKI-EELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDK 234 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHH-HHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHh
Confidence 999999999999999999999999999999997 4566666678899999999999887 69999999999999999999
Q ss_pred HHhcC
Q 000680 805 LLLAG 809 (1354)
Q Consensus 805 l~~~~ 809 (1354)
+..++
T Consensus 235 iF~~P 239 (253)
T COG1117 235 IFTNP 239 (253)
T ss_pred hhcCc
Confidence 87654
No 108
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-40 Score=378.73 Aligned_cols=203 Identities=32% Similarity=0.427 Sum_probs=179.9
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i~y 662 (1354)
.|+++|++++|++. .+++|+|++|++||+++++|||||||||||++|+|+.+|++|+|.++| .||+
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iam 79 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM 79 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEE
Confidence 58999999999753 289999999999999999999999999999999999999999999988 4999
Q ss_pred EeCCCCC-CCCcHHHHHhcCCCCC-------HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 000680 663 VSQTSWI-QSGSIRDNILYGKPMD-------KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1354)
Q Consensus 663 v~Q~~~~-~~~ti~eni~~g~~~~-------~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1354)
|+|+.-+ +++||+|||.||.... +++.+++.+..++++.++ .++.+||||||||||||||+
T Consensus 80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~-----------r~P~~LSGGQrQRVAlaRAl 148 (338)
T COG3839 80 VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLN-----------RKPLQLSGGQRQRVALARAL 148 (338)
T ss_pred EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHh-----------cCcccCChhhHHHHHHHHHH
Confidence 9999876 5779999999986542 457777888888888776 45678999999999999999
Q ss_pred hcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhh-hcCEEEEEeCCeEEEecChHHHHhcCc
Q 000680 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLAGT 810 (1354)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1354)
.++|+++|||||+|+||++.+..+..++.+... -+.|+|.||||..+.. .+|||+||++|+|.+.|++.|+.++..
T Consensus 149 Vr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred hcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 999999999999999999999998887766433 3789999999987765 589999999999999999999987643
No 109
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9e-41 Score=361.80 Aligned_cols=203 Identities=32% Similarity=0.440 Sum_probs=176.0
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~ 659 (1354)
.|.++|.+..|+. .++++|||++|+.||++++.|||||||||||++|+|+..|++|+|.++| +
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRK 78 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcc
Confidence 4678888888874 4689999999999999999999999999999999999999999999987 4
Q ss_pred EEEEeCCCCC-CCCcHHHHHhcCCCC---------CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 000680 660 IAYVSQTSWI-QSGSIRDNILYGKPM---------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1354)
Q Consensus 660 i~yv~Q~~~~-~~~ti~eni~~g~~~---------~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1354)
||||+|+.-+ +.+||.|||.||.+. .+.+..+.++.|.|+.--+ .++.+||||||||||
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~-----------ryP~QLSGGQrQRVA 147 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLAD-----------RYPAQLSGGQRQRVA 147 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhh-----------cCchhcChHHHHHHH
Confidence 9999999865 578999999999732 2345666677777754333 567799999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 730 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
||||+..+|++|||||||+|||++..+.+...+.+...+ |.|+++||||.++... ||||++|++|+|.+.|+++|+..
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 999999999999999999999999999987766655444 8899999999998655 89999999999999999999986
Q ss_pred cCc
Q 000680 808 AGT 810 (1354)
Q Consensus 808 ~~~ 810 (1354)
.+.
T Consensus 228 ~P~ 230 (345)
T COG1118 228 HPA 230 (345)
T ss_pred CCC
Confidence 543
No 110
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-40 Score=379.53 Aligned_cols=204 Identities=30% Similarity=0.433 Sum_probs=179.5
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEE
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIA 661 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i~ 661 (1354)
..++++|++.+|+ +..+++|+||+|++||+++++|||||||||||++|+|+..|++|+|.++| .|+
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig 80 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIG 80 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccc
Confidence 4699999999998 35799999999999999999999999999999999999999999999998 499
Q ss_pred EEeCCCCC-CCCcHHHHHhcCCCC----C-H---HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 000680 662 YVSQTSWI-QSGSIRDNILYGKPM----D-K---ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1354)
Q Consensus 662 yv~Q~~~~-~~~ti~eni~~g~~~----~-~---~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1354)
+|+|+.-+ +++||+|||.||... . + +++.++++..+|....+ +++.+|||||||||+|||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~-----------R~p~qLSGGQqQRVALAR 149 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFAD-----------RKPHQLSGGQQQRVALAR 149 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhh-----------hChhhhChHHHHHHHHHH
Confidence 99999776 578999999999762 2 2 36667777777765333 677899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcch-hhhcCEEEEEeCCeEEEecChHHHHhcCc
Q 000680 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQELLLAGT 810 (1354)
Q Consensus 733 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~-l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1354)
||..+|+++|||||+||||.+.++++..++..... .|.|.|+||||.++ +..+|||+||++|+|.+.|+++|+...+.
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~ 229 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPA 229 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcc
Confidence 99999999999999999999999999887776543 48999999999977 55689999999999999999999987653
No 111
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.4e-40 Score=346.18 Aligned_cols=205 Identities=27% Similarity=0.422 Sum_probs=176.9
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------- 658 (1354)
+..|+++++++++.. +.+++|+||+|++||+++|+||+||||||||++|.|+++|++|+|.+.|
T Consensus 6 ~~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 6 EPLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred cceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH
Confidence 467999999999974 5799999999999999999999999999999999999999999999987
Q ss_pred ---eEEEEeCCCCCCC-CcHHHHHhcCC----CCCHHHHH----HHHHHhccHHH-HhcCCCCCcccccCCCCCCChHHH
Q 000680 659 ---SIAYVSQTSWIQS-GSIRDNILYGK----PMDKARYD----KAIKACALDKD-INNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 ---~i~yv~Q~~~~~~-~ti~eni~~g~----~~~~~~~~----~~~~~~~l~~~-l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
++|+++|+.-+|. .||+||+.|.. ..+++.++ ..+++++|..+ .+.+ +.+||||++
T Consensus 83 ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----------PsELSGGM~ 151 (263)
T COG1127 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLY-----------PSELSGGMR 151 (263)
T ss_pred HHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----------chhhcchHH
Confidence 4999999988874 69999999953 23444333 45677888776 5544 468999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc--CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecCh
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1354)
+|++||||+..||+++++|||||||||.+...+ ++++.... -|-|+|+||||++.+.. ||+++++.||+|+..|++
T Consensus 152 KRvaLARAialdPell~~DEPtsGLDPI~a~~~-~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~ 230 (263)
T COG1127 152 KRVALARAIALDPELLFLDEPTSGLDPISAGVI-DELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTP 230 (263)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCcchHHHH-HHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCH
Confidence 999999999999999999999999999998875 55555433 37899999999998876 799999999999999999
Q ss_pred HHHHhcCch
Q 000680 803 QELLLAGTA 811 (1354)
Q Consensus 803 ~~l~~~~~~ 811 (1354)
+|+.+.+..
T Consensus 231 ~el~~sd~P 239 (263)
T COG1127 231 EELLASDDP 239 (263)
T ss_pred HHHHhCCCH
Confidence 999886543
No 112
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=3e-39 Score=402.54 Aligned_cols=179 Identities=23% Similarity=0.331 Sum_probs=147.7
Q ss_pred eeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEE-----------EcC---------
Q 000680 599 EGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN-----------LYG--------- 658 (1354)
Q Consensus 599 ~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~-----------~~g--------- 658 (1354)
+.++.|+.+ ..+|++++ .+++||+++|+||||||||||+++|+|+++|++|+|. ++|
T Consensus 78 ~~~~~yg~~--~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 78 EPVHRYGVN--GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred CceEEecCC--ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence 478888742 36899999 9999999999999999999999999999999999996 544
Q ss_pred ------eEEEEeC----CCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 000680 659 ------SIAYVSQ----TSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1354)
Q Consensus 659 ------~i~yv~Q----~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1354)
+++|.+| .|.++.+|++||+.... ..++.+++++..++.... ..+..+||||||||+
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~--~~~~~~~~l~~l~l~~~~-----------~~~~~~LSgGe~qrv 221 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD--ERGKLDEVVERLGLENIL-----------DRDISELSGGELQRV 221 (590)
T ss_pred HhccCcceeecccchhhhhhhhcchHHHHHHhhh--HHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHH
Confidence 2455554 56667789999997521 234566677766665433 256678999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCC
Q 000680 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGG 794 (1354)
Q Consensus 729 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G 794 (1354)
+||||++++|++|+||||||+||++..+++++.+..... |+|+|+|||+++.+.. +|+|++|++|
T Consensus 222 ~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 222 AIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999876655545 8999999999999876 8999999753
No 113
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=8.3e-39 Score=364.53 Aligned_cols=219 Identities=41% Similarity=0.710 Sum_probs=196.3
Q ss_pred cCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCCC
Q 000680 589 QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSW 668 (1354)
Q Consensus 589 ~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~i~yv~Q~~~ 668 (1354)
+.....++++|+++.+ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++|++|+++
T Consensus 34 ~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~ 108 (282)
T cd03291 34 SSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSW 108 (282)
T ss_pred CCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCccc
Confidence 3456679999999962 35999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 000680 669 IQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFS 748 (1354)
Q Consensus 669 ~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s 748 (1354)
+++.|++||+.++......++.+.++++++.+.++.++.+..+.+++++.+||||||||++||||++++|+++||||||+
T Consensus 109 l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~ 188 (282)
T cd03291 109 IMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFG 188 (282)
T ss_pred ccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 98899999999876555556677788888988899999988888889999999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcCchH
Q 000680 749 AVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812 (1354)
Q Consensus 749 ~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 812 (1354)
+||+.+.+.+.+.++....+++|+|++||+++.+..||++++|++|++++.|+.+++.+....+
T Consensus 189 gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~ 252 (282)
T cd03291 189 YLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDF 252 (282)
T ss_pred cCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhcchHH
Confidence 9999999988876654445678999999999999889999999999999999999987654333
No 114
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2e-39 Score=348.29 Aligned_cols=193 Identities=28% Similarity=0.407 Sum_probs=163.0
Q ss_pred EEEEeeEEEeCCCC-CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000680 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------- 658 (1354)
++++|++..|.... ..++|+++||+|++||+++|+||+||||||||++|.|+.+|++|.|.++|
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 56889999887542 24789999999999999999999999999999999999999999999987
Q ss_pred --eEEEEeCCCC-CCCCcHHHHHhcCC----CCC---HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 000680 659 --SIAYVSQTSW-IQSGSIRDNILYGK----PMD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1354)
Q Consensus 659 --~i~yv~Q~~~-~~~~ti~eni~~g~----~~~---~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1354)
+||||+|+.. +++.|++|||.++. ... +++.++.++..+|.+... ..++.+|||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHHHH
Confidence 3999999976 57889999999532 111 334445555555554333 245779999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhhcCEEEEEeCCeEE
Q 000680 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQIT 797 (1354)
Q Consensus 729 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~ 797 (1354)
|+|||++.+|+++|.||||.+||.++++.+++.+..... .|+|+|+||||......|||++.|+||++.
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 999999999999999999999999999999987766544 489999999999999999999999999954
No 115
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=7.3e-39 Score=359.27 Aligned_cols=219 Identities=31% Similarity=0.469 Sum_probs=192.0
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~ 661 (1354)
++++|+++.|+.. ..++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4689999999643 35699999999999999999999999999999999999999999999987 389
Q ss_pred EEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000680 662 YVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1354)
Q Consensus 662 yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1354)
|++|++++++.|++||+.++.. ...++..+.++..++.+.++.+|.|..+..++++.+|||||||||+||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 9999999988999999998653 334455566666778888888888877778889999999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcCchHHHH
Q 000680 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815 (1354)
Q Consensus 741 llLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 815 (1354)
+||||||++||+...+.+.+.+... .+|+|+|++||+++.+..||++++|++|++++.|+++++.++.+.+..+
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 233 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDI-CAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYL 233 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHH
Confidence 9999999999999999988766544 4589999999999999889999999999999999999988765555443
No 116
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.4e-39 Score=352.49 Aligned_cols=201 Identities=56% Similarity=0.983 Sum_probs=183.3
Q ss_pred EEEEeeEEEeCCCCC--CCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCCCCCCC
Q 000680 595 VKIQEGNFSWDPELA--IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~--~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~i~yv~Q~~~~~~~ 672 (1354)
++++|+++.|++... .++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+|+|++|+|.+++.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~ 80 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNG 80 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccC
Confidence 468999999975321 369999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCH
Q 000680 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752 (1354)
Q Consensus 673 ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~ 752 (1354)
|++||+.++..++.++..++.+.+++.+.+..+|.|..|.+++++.+||||||||++||||++++|++++|||||++||+
T Consensus 81 t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~ 160 (204)
T cd03250 81 TIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDA 160 (204)
T ss_pred cHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 99999999876666677788888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh-cCCcEEEEEcCCcchhhhcCEEEEEeCCe
Q 000680 753 HTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1354)
Q Consensus 753 ~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~G~ 795 (1354)
+..+.+++.++... .+++|+|++||+++.+..+|++++|++|+
T Consensus 161 ~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 161 HVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 99999887665433 45789999999999988899999999985
No 117
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-39 Score=341.33 Aligned_cols=200 Identities=30% Similarity=0.445 Sum_probs=172.7
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------- 658 (1354)
.|+++|++..|+. .+.+|+||||+|++||+++|+|++||||||||++|.|+.+|++|+|.++|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 5899999999974 46799999999999999999999999999999999999999999999987
Q ss_pred -eEEEEeCCCCC-CCCcHHHHHhcCCC------------CCHHHHH---HHHHHhccHHHHhcCCCCCcccccCCCCCCC
Q 000680 659 -SIAYVSQTSWI-QSGSIRDNILYGKP------------MDKARYD---KAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1354)
Q Consensus 659 -~i~yv~Q~~~~-~~~ti~eni~~g~~------------~~~~~~~---~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LS 721 (1354)
++||++|++.+ +..||.+|++.|.- +.++... ++++..++.+... .+..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-----------qra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-----------QRASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-----------HHhccCC
Confidence 49999999876 67799999987741 2333333 3344444443322 5778999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEe
Q 000680 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQS 799 (1354)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~ 799 (1354)
|||+|||+|||||+++|+++|-|||+++|||.+++++++.+.+.. ..|.|+|+.-|++++..+ ||||+-|++|+|+++
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999998877654 468999999999999875 999999999999999
Q ss_pred cChHHHH
Q 000680 800 GNYQELL 806 (1354)
Q Consensus 800 g~~~~l~ 806 (1354)
|+.+|+.
T Consensus 230 g~~~el~ 236 (258)
T COG3638 230 GPASELT 236 (258)
T ss_pred CChhhhh
Confidence 9999964
No 118
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=8.3e-37 Score=349.17 Aligned_cols=399 Identities=17% Similarity=0.207 Sum_probs=293.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHH-HHHHHHHH
Q 000680 943 GVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSI-VFVAASGT 1021 (1354)
Q Consensus 943 ~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l-~~~~~~~~ 1021 (1354)
.+.+..+++.++|+.++.+.+.+.-+.+..+.+...+++|..--...+....+ +|.+++..++...- .-++..-
T Consensus 71 ~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaP- 145 (580)
T COG4618 71 GLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAP- 145 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCc-
Confidence 44556778888999999999999999999999999988877644333333443 48888887775432 2222221
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHH
Q 000680 1022 ELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYL 1101 (1354)
Q Consensus 1022 ~~i~~i~v~~~~~~~l~l~~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~ 1101 (1354)
..-..+++++.+.|++.++++.-.++.+.+...--...|+--+..++..+.-..+..-+..+..+|+|.|+.+...+++.
T Consensus 146 W~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~ 225 (580)
T COG4618 146 WMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWG 225 (580)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHH
Confidence 22234456666777776666544443333333323333333344444555567788889999999999999877777766
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 1102 KLVDIDASLFFHTNGVMEWLILRVEALQN-LTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANY 1180 (1354)
Q Consensus 1102 ~~~d~~~~~~~~~~~~~~wl~~~l~~l~~-~~~~~~~~~~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~ 1180 (1354)
+....+....-...-.+.-++...-.+-. +-..+.++.++++.+|++|+|.+...-..+.....|+...+..|.++-.+
T Consensus 226 ~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~A 305 (580)
T COG4618 226 RFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAA 305 (580)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHH
Confidence 55544332221111111111111000000 11223344566778999999998887777778888999999999999999
Q ss_pred hhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHH
Q 000680 1181 IISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLI 1260 (1354)
Q Consensus 1181 ~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~ 1260 (1354)
..|..|+.+.++..++.... -..|. .+|.+..|++++.=++...|+|+||||+++|||-+|||||||||||||.
T Consensus 306 r~s~~Rl~~lL~~~p~~~~~---m~LP~---P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLa 379 (580)
T COG4618 306 RQSYKRLNELLAELPAAAER---MPLPA---PQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLA 379 (580)
T ss_pred HHHHHHHHHHHHhCccccCC---CCCCC---CCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHH
Confidence 99999999999765554321 11121 3699999999996555556899999999999999999999999999999
Q ss_pred HHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCC
Q 000680 1261 SALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLP 1339 (1354)
Q Consensus 1261 ~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp 1339 (1354)
++|.|.+.|.+|+|.+||-|+++.+.++|=++|||.|||-.||+|||++||.-|+ +.++|.|.+|++.|+.||.|.+||
T Consensus 380 R~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP 459 (580)
T COG4618 380 RLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLP 459 (580)
T ss_pred HHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCc
Confidence 9999999999999999999999999999999999999999999999999998777 678888999999999999999999
Q ss_pred CCcCC----CCcccccc
Q 000680 1340 NKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1340 ~gldt----~G~n~s~~ 1352 (1354)
+|||| +|..+|.|
T Consensus 460 ~GYdT~iG~~G~~LSgG 476 (580)
T COG4618 460 QGYDTRIGEGGATLSGG 476 (580)
T ss_pred CCccCccCCCCCCCCch
Confidence 99999 57788765
No 119
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=3.3e-39 Score=323.37 Aligned_cols=199 Identities=29% Similarity=0.437 Sum_probs=174.3
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i~yv 663 (1354)
+.++++.|+|...+ =..+++|+.||+++|+||+||||||||+.|+|+..|.+|+|.++| .++.+
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSml 76 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhh
Confidence 46778999997432 257899999999999999999999999999999999999999988 39999
Q ss_pred eCCCCCCC-CcHHHHHhcCCC-------CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh
Q 000680 664 SQTSWIQS-GSIRDNILYGKP-------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 664 ~Q~~~~~~-~ti~eni~~g~~-------~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1354)
+|+..+|. .||.+||.+|.. .++++.+.+..+.+|...++++|. +|||||||||+|||++.
T Consensus 77 FQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARclv 145 (231)
T COG3840 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCLV 145 (231)
T ss_pred hhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHHh
Confidence 99998875 599999999853 245677888888899988887774 79999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhcC
Q 000680 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
++.+|+|||||||||||.-+..+...+.... .++.|+++|||+++.+.. +|+++++++|+|.++|+.+++....
T Consensus 146 R~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 146 REQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred ccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence 9999999999999999999998776554433 467899999999999876 8999999999999999999987643
No 120
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.4e-39 Score=351.51 Aligned_cols=202 Identities=28% Similarity=0.482 Sum_probs=180.1
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~ 659 (1354)
.++++|.+|+|+++ .++|+|+|++|++||.++|+|+||||||||++++.|+++|++|.|.++| +
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 47899999999865 5799999999999999999999999999999999999999999998876 3
Q ss_pred EEEEeCCC--CCCCCcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 660 IAYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 660 i~yv~Q~~--~~~~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
||||+|+| .++..||.|.+.||.. .+ +++.+++++.|++.+..+ +.+.+|||||||||+|
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~-----------r~p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLD-----------RPPFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhcc-----------CCccccCCcceeeHHh
Confidence 99999999 5788999999999853 33 345677888888877644 4567999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
|.+|..+|++++||||||+||+...+.+.+.+.+...+ |+|+|++|||++.+.. ||++++|++|+++.+|+++++.++
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 99999999999999999999999999998877666555 6899999999999887 999999999999999999988754
No 121
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=2.8e-38 Score=354.76 Aligned_cols=215 Identities=32% Similarity=0.503 Sum_probs=189.8
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~ 661 (1354)
++++|+++.|+.....++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4689999999753335799999999999999999999999999999999999999999999877 399
Q ss_pred EEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000680 662 YVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1354)
Q Consensus 662 yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1354)
|++|++.+++.|++||+.++.. ...++..+.++.+++.+.++.+|.|..+..+.+..+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999998888899999998753 234455667777788888888888888888888999999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcCc
Q 000680 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGT 810 (1354)
Q Consensus 741 llLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1354)
+||||||++||++..+.+.+.+.... +|+|+|++||+++.+..||++++|++|++++.|+.+++.....
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 229 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKG 229 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcCh
Confidence 99999999999999999887665544 7899999999999988899999999999999999888865443
No 122
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-38 Score=336.32 Aligned_cols=205 Identities=25% Similarity=0.401 Sum_probs=176.3
Q ss_pred cEEEEeeEEEeCCCC-CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000680 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------- 658 (1354)
.++++|.++.|+... ..++++||||+|.+||+++|+|++|||||||.++|+|+.+|++|+|.++|
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 578999999998542 12599999999999999999999999999999999999999999999988
Q ss_pred eEEEEeCCCC---CCCCcHHHHHhcCCC-----CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 659 SIAYVSQTSW---IQSGSIRDNILYGKP-----MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 659 ~i~yv~Q~~~---~~~~ti~eni~~g~~-----~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
.|-+|+|+|. -+..||++-|.-+.. ..+++..++++..+|.+... .+++.+|||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l----------~R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFL----------DRRPHELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHH----------hcCchhcChhHHHHHHH
Confidence 3899999985 256799888764322 23456777888888876543 25677899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
||||..+|+++|||||||+||+.+...|.+.+.+.. ..+-|.|+||||+..+.+ ||||+||++|+++|.++.+++...
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 999999999999999999999999999998766543 356799999999999987 899999999999999999998865
No 123
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-38 Score=351.50 Aligned_cols=212 Identities=30% Similarity=0.501 Sum_probs=190.1
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i 660 (1354)
.++++|++++|+.. +++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCCC--CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 57899999999632 3699999999999999999999999999999999999999999999876 38
Q ss_pred EEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 000680 661 AYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1354)
Q Consensus 661 ~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ 739 (1354)
+|++|++++++.|++||+.++.+ ...++..+.++.+++.+.++.+|.|..+..+.++.+|||||||||+||||++++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999888899999998754 34456677788889988899999888888888999999999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhc
Q 000680 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 740 illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
++||||||++||+.+.+.+.+.+... .+++|+|++||+++.++.||++++|++|++++.|+.+++...
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKL-MKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 99999999999999999988766544 468999999999999888999999999999999998887643
No 124
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=7.8e-38 Score=354.68 Aligned_cols=216 Identities=27% Similarity=0.388 Sum_probs=193.9
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------- 658 (1354)
.+.++++|++++|+.. ..++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 17 ~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 17 GGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 4579999999999753 24699999999999999999999999999999999999999999999876
Q ss_pred eEEEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000680 659 SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1354)
Q Consensus 659 ~i~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~ 738 (1354)
.++|++|+|++++.|++||+........+++.++++..++.+.++.+|.|.++.+++++.+||||||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 38999999999999999999765444556677788888899999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcC
Q 000680 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 739 ~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
++++|||||++||+++.+.+++.+.. ..+++|+|++||+++.+..||+|++|++|++++.|+++++.+..
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~-~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 245 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMT-AFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQE 245 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHH-hcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhcc
Confidence 99999999999999999887765543 44689999999999999889999999999999999999987653
No 125
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.9e-38 Score=351.33 Aligned_cols=213 Identities=32% Similarity=0.544 Sum_probs=189.4
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~ 661 (1354)
++++|++++|+.. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4689999999643 23689999999999999999999999999999999999999999999876 389
Q ss_pred EEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000680 662 YVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1354)
Q Consensus 662 yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1354)
|++|++++++.|++||+.++.. ...+.+.+..+.+.+.+.++.++.|..+..+.++.+||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999988999999998753 345566677777888888999988887888889999999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcC
Q 000680 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 741 llLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
+||||||++||+.+.+.+.+.+.+. .+++|+|++||+++.+..||++++|++|++++.|+.+++....
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 227 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERL-MKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQG 227 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcC
Confidence 9999999999999999987765444 4689999999999999889999999999999999999886554
No 126
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.9e-38 Score=369.75 Aligned_cols=203 Identities=25% Similarity=0.351 Sum_probs=172.5
Q ss_pred EEEEeeEEEeCCCC-CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000680 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------- 658 (1354)
|+++|++++|+... ..++|+|+||+|++||+++|+||||||||||+++|.|+.+|++|+|.++|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996422 34699999999999999999999999999999999999999999999876
Q ss_pred -eEEEEeCCCCCC-CCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 000680 659 -SIAYVSQTSWIQ-SGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1354)
Q Consensus 659 -~i~yv~Q~~~~~-~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1354)
+|||++|++.++ +.|++||+.++.. .++ ++..+.++..+|.+.. ..++.+|||||||||+
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~-----------~~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKH-----------DSYPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHHH
Confidence 389999999876 5799999998632 222 2334445555554322 3567799999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 730 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
||||++.+|+++|||||||+||+.+.+.+.+.+.+...+ |.|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 999999999999999999999999999998766654443 8999999999999876 89999999999999999999976
Q ss_pred c
Q 000680 808 A 808 (1354)
Q Consensus 808 ~ 808 (1354)
.
T Consensus 231 ~ 231 (343)
T TIGR02314 231 H 231 (343)
T ss_pred C
Confidence 4
No 127
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.5e-38 Score=350.50 Aligned_cols=214 Identities=33% Similarity=0.549 Sum_probs=190.0
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~ 661 (1354)
++++|+++.|+.+ .++++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| .++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4689999999632 4689999999999999999999999999999999999999999999977 289
Q ss_pred EEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000680 662 YVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1354)
Q Consensus 662 yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1354)
|++|++++++.|++||+.++.. ...+...+.++.+++.+.++.++.|..+.++.++.+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998753 334455667778888888899999988888889999999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcCch
Q 000680 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTA 811 (1354)
Q Consensus 741 llLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 811 (1354)
+||||||++||+++.+.+.+.+..... |+|+|++||+++.+..||++++|++|++++.|+.+++.+....
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~ 228 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGL 228 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccH
Confidence 999999999999999998876654444 8999999999999988999999999999999999888765433
No 128
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-38 Score=371.15 Aligned_cols=203 Identities=31% Similarity=0.447 Sum_probs=175.0
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i~y 662 (1354)
.++++|+++.|+. +.++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++| .|||
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAM 80 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 3789999999942 24699999999999999999999999999999999999999999999987 3999
Q ss_pred EeCCCCCC-CCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 000680 663 VSQTSWIQ-SGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1354)
Q Consensus 663 v~Q~~~~~-~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1354)
|+|++.++ +.||+|||.|+.. .++ ++.+++++..+|.+..+ .++.+|||||||||+||||+
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~QRvalARAL 149 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLD-----------RKPRELSGGQRQRVAMGRAI 149 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhh-----------CChhhCCHHHHHHHHHHHHH
Confidence 99999886 5799999998743 222 34456666666654433 55678999999999999999
Q ss_pred hcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhcC
Q 000680 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
+.+|+++|||||||+||+...+.+.+.+..... .|.|+|+||||++.+.. ||+|++|++|++++.|+++++.++.
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 999999999999999999999999887765444 38999999999998765 8999999999999999999997654
No 129
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.4e-38 Score=322.01 Aligned_cols=193 Identities=24% Similarity=0.404 Sum_probs=173.6
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------------- 658 (1354)
|+|+|++..|+.. +++|+|+||+|++||++-|+||+||||||||++|.++.+|++|+|.++|
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7899999999865 5799999999999999999999999999999999999999999999987
Q ss_pred eEEEEeCCCC-CCCCcHHHHHhcCCCC---C----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 659 SIAYVSQTSW-IQSGSIRDNILYGKPM---D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 659 ~i~yv~Q~~~-~~~~ti~eni~~g~~~---~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
+||+|+|+.- +++.||.||+.|.... . +++..++++..+|.+....+|. +|||||||||+|
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHH
Confidence 5999999976 5788999999996432 2 4566778888899888887764 799999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhc-CEEEEEeCCeEEEec
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSG 800 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~-d~i~~l~~G~i~~~g 800 (1354)
|||+..+|+++|-||||.+|||..+..|++.+.+....|.||+++|||.+.+... -+++.+++|+++...
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 9999999999999999999999999999987666677899999999999999886 789999999998653
No 130
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=3.3e-37 Score=354.33 Aligned_cols=192 Identities=27% Similarity=0.421 Sum_probs=170.0
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe-------------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~------------- 659 (1354)
..+++++.+..|+ ...+++||||+|++||+.|++|.||+|||||+++|.|.++|++|+|.++|+
T Consensus 3 ~~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~ 79 (501)
T COG3845 3 PALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79 (501)
T ss_pred ceEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHc
Confidence 4689999999998 357999999999999999999999999999999999999999999999983
Q ss_pred -EEEEeCCCCC-CCCcHHHHHhcCCCC------C----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 000680 660 -IAYVSQTSWI-QSGSIRDNILYGKPM------D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1354)
Q Consensus 660 -i~yv~Q~~~~-~~~ti~eni~~g~~~------~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1354)
||+|.|++.+ .+.||.|||..|.+- + .++.++..+.+++.-|.+ ++...||=|||||
T Consensus 80 GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~-----------~~V~dLsVG~qQR 148 (501)
T COG3845 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPD-----------AKVADLSVGEQQR 148 (501)
T ss_pred CCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcc-----------ceeecCCcchhHH
Confidence 9999999876 677999999998752 2 234555556666655543 5677899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEE
Q 000680 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1354)
Q Consensus 728 v~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1354)
|.|-+|||++|+++||||||+-|-|...+++|+.+.+...+|+|||++||.++++.. ||++-||.+|+++.
T Consensus 149 VEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg 220 (501)
T COG3845 149 VEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG 220 (501)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe
Confidence 999999999999999999999999999999999887777899999999999999876 89999999999863
No 131
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.1e-37 Score=363.38 Aligned_cols=197 Identities=25% Similarity=0.359 Sum_probs=165.6
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe-------------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~------------- 659 (1354)
.-++++|++++|+. .++|+|+||++.+||+++++|.||+|||||+|.|.|.++|++|+|.++|+
T Consensus 7 ~ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~ 83 (500)
T COG1129 7 PLLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83 (500)
T ss_pred ceeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhC
Confidence 45889999999984 57999999999999999999999999999999999999999999999983
Q ss_pred -EEEEeCCCCC-CCCcHHHHHhcCCCC-------CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 660 -IAYVSQTSWI-QSGSIRDNILYGKPM-------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 660 -i~yv~Q~~~~-~~~ti~eni~~g~~~-------~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
|+.|.|+..+ ++.||.|||.+|.+. |..+.++..+ +-++.+..... ...+..+||+||||-|+|
T Consensus 84 GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~-----~~l~~lg~~~~--~~~~v~~LsiaqrQ~VeI 156 (500)
T COG1129 84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAR-----ELLARLGLDID--PDTLVGDLSIAQRQMVEI 156 (500)
T ss_pred CcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHH-----HHHHHcCCCCC--hhhhhhhCCHHHHHHHHH
Confidence 9999999875 788999999888642 2232222111 11222211111 335677899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEe
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQS 799 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~ 799 (1354)
|||+..++++++||||||+|+.+..+++|+.+.+...+|.++|+|||+++++.. ||||.||+||+.+..
T Consensus 157 ArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~ 226 (500)
T COG1129 157 ARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGT 226 (500)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeee
Confidence 999999999999999999999999999999887777899999999999999876 899999999998854
No 132
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1e-37 Score=346.31 Aligned_cols=206 Identities=28% Similarity=0.436 Sum_probs=187.0
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i 660 (1354)
.++++|++++|+.. .+++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 47899999999743 24699999999999999999999999999999999999999999999876 38
Q ss_pred EEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000680 661 AYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1354)
Q Consensus 661 ~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1354)
+|++|++.+++.|++||+.+......++..+.++..++.+.+..++.|..+..++++.+||||||||++||||++.+|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999988999999987665666777788888999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecC
Q 000680 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1354)
Q Consensus 741 llLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 801 (1354)
++|||||++||+.+.+.+.+.+.+. .+++|+|++||+++.+..+|++++|++|++++.|+
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREA-FKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 9999999999999999987765443 45689999999999998899999999999998775
No 133
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-37 Score=362.07 Aligned_cols=208 Identities=23% Similarity=0.391 Sum_probs=173.5
Q ss_pred CCCcEEEEeeEEEeCCCC--CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------
Q 000680 591 SDRSVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------- 658 (1354)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~--~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------- 658 (1354)
.+..++++|++|.|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 345699999999997432 24699999999999999999999999999999999999999999998864
Q ss_pred -------------------eEEEEeCCC--CCCCCcHHHHHhcCCC---CCHH----HHHHHHHHhccHHHHhcCCCCCc
Q 000680 659 -------------------SIAYVSQTS--WIQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDL 710 (1354)
Q Consensus 659 -------------------~i~yv~Q~~--~~~~~ti~eni~~g~~---~~~~----~~~~~~~~~~l~~~l~~l~~gd~ 710 (1354)
.++||+|+| .+++.|++|||.|+.. .+.+ +..+.++.+++..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------- 167 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD---------- 167 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh----------
Confidence 279999998 6788899999998732 2222 2233333333321
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhh-hcCEEE
Q 000680 711 TEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRIL 789 (1354)
Q Consensus 711 t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~ 789 (1354)
...++++.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.....+|+|+|+|||+++.+. .||+|+
T Consensus 168 ~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~ 247 (320)
T PRK13631 168 SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVI 247 (320)
T ss_pred hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE
Confidence 1234678899999999999999999999999999999999999999998766554456899999999999875 599999
Q ss_pred EEeCCeEEEecChHHHHhc
Q 000680 790 VLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 790 ~l~~G~i~~~g~~~~l~~~ 808 (1354)
+|++|++++.|+++++...
T Consensus 248 vl~~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 248 VMDKGKILKTGTPYEIFTD 266 (320)
T ss_pred EEECCEEEEeCCHHHHhcC
Confidence 9999999999999998754
No 134
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.8e-38 Score=366.21 Aligned_cols=203 Identities=27% Similarity=0.344 Sum_probs=173.6
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEE
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIA 661 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i~ 661 (1354)
..++++|+++.|+. .++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++| ++|
T Consensus 5 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 81 (351)
T PRK11432 5 NFVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDIC 81 (351)
T ss_pred cEEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 36899999999963 4689999999999999999999999999999999999999999999987 489
Q ss_pred EEeCCCCCC-CCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 000680 662 YVSQTSWIQ-SGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1354)
Q Consensus 662 yv~Q~~~~~-~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARa 733 (1354)
||+|++.++ +.|++|||.|+.. .++ ++.+++++..++.... ..++.+|||||||||+||||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~-----------~r~~~~LSgGq~QRVaLARa 150 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFE-----------DRYVDQISGGQQQRVALARA 150 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHHH
Confidence 999999876 5799999999743 222 2344455555554322 35678999999999999999
Q ss_pred HhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhcC
Q 000680 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 734 l~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
++.+|+++|||||||+||+...+.+.+.+..... .|+|+|+||||.+++.. ||+|++|++|+|++.|+++++....
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p 228 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999998876655443 38999999999998755 8999999999999999999997654
No 135
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.2e-38 Score=349.82 Aligned_cols=200 Identities=27% Similarity=0.384 Sum_probs=167.7
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------------- 658 (1354)
++++|+++.|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 468999999963 4699999999999999999999999999999999999999999998866
Q ss_pred eEEEEeCCCCCCC-CcHHHHHhcCCC----CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 000680 659 SIAYVSQTSWIQS-GSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1354)
Q Consensus 659 ~i~yv~Q~~~~~~-~ti~eni~~g~~----~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1354)
.++|++|++.+++ .|++||+.++.. .+. ++..++++.+++.+.. ..+..+|||||||||+
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE-----------DLYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHH
Confidence 2899999987765 599999987521 222 2233444444443322 3566789999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 730 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
||||++++|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999998876655444 48999999999998876 89999999999999999988764
Q ss_pred c
Q 000680 808 A 808 (1354)
Q Consensus 808 ~ 808 (1354)
.
T Consensus 227 ~ 227 (235)
T cd03261 227 S 227 (235)
T ss_pred C
Confidence 3
No 136
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=2.6e-37 Score=342.82 Aligned_cols=205 Identities=38% Similarity=0.598 Sum_probs=182.5
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i 660 (1354)
.++++|+++.|+.. ..++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 47899999999642 24699999999999999999999999999999999999999999999877 38
Q ss_pred EEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 000680 661 AYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1354)
Q Consensus 661 ~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ 739 (1354)
+|++|++++++.|++||+.++.. .++++..+.++.+++.+.++..|.|..|.+.++..+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999998888899999988643 34556777888889998889999998888888899999999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEec
Q 000680 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800 (1354)
Q Consensus 740 illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g 800 (1354)
++||||||++||+.+.+.+.+.+.... +++|+|++||+++.+..||++++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999887665443 348999999999988779999999999998654
No 137
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.2e-37 Score=365.88 Aligned_cols=202 Identities=30% Similarity=0.389 Sum_probs=173.9
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i~y 662 (1354)
.++++|++++|+. ..+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++| .+||
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~ 80 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGI 80 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 4899999999973 4589999999999999999999999999999999999999999999987 3999
Q ss_pred EeCCCCCC-CCcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 000680 663 VSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1354)
Q Consensus 663 v~Q~~~~~-~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1354)
|+|++.++ +.||+|||.|+.. .+ .++.+++++..+|.+.+ .+++.+|||||||||+||||+
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~-----------~~~~~~LSgGq~QRvaLARaL 149 (353)
T TIGR03265 81 VFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSE-----------RKYPGQLSGGQQQRVALARAL 149 (353)
T ss_pred EeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchh-----------hCChhhCCHHHHHHHHHHHHH
Confidence 99999876 5799999998743 22 23444555555554332 366789999999999999999
Q ss_pred hcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhcC
Q 000680 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
+.+|+++|||||||+||+...+++.+.+..... .|.|+|+||||.+++.. ||+|++|++|++++.|+++++.+..
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 150 ATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 999999999999999999999999877665444 38899999999998765 8999999999999999999998754
No 138
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=7.1e-38 Score=366.71 Aligned_cols=189 Identities=26% Similarity=0.361 Sum_probs=163.2
Q ss_pred CCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------eEEEEeCCCCCCC-
Q 000680 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIAYVSQTSWIQS- 671 (1354)
Q Consensus 610 ~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------------~i~yv~Q~~~~~~- 671 (1354)
+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +++||+|++++++
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 4689999999999999999999999999999999999999999999877 4999999999875
Q ss_pred CcHHHHHhcCCCC---CH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEe
Q 000680 672 GSIRDNILYGKPM---DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744 (1354)
Q Consensus 672 ~ti~eni~~g~~~---~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLD 744 (1354)
.||+|||.|+..+ +. ++..++++..+|... .++++.+|||||||||+||||++++|+++|||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~-----------~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEY-----------EHRYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchh-----------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 6999999986432 22 233444444455433 34677899999999999999999999999999
Q ss_pred CCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhcC
Q 000680 745 DPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 745 ep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
|||||||+.+++.+++.+..... .++|+|+||||++++.. ||+|++|++|++++.|+++++..+.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p 221 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNP 221 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCc
Confidence 99999999999999988776544 48999999999998755 8999999999999999999998654
No 139
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-37 Score=356.32 Aligned_cols=204 Identities=22% Similarity=0.402 Sum_probs=172.2
Q ss_pred EEEEeeEEEeCCCCC--CCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000680 595 VKIQEGNFSWDPELA--IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~--~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------- 658 (1354)
|+++|++|+|+.... +++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 689999999974321 3599999999999999999999999999999999999999999999876
Q ss_pred ---eEEEEeCCC--CCCCCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHH
Q 000680 659 ---SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1354)
Q Consensus 659 ---~i~yv~Q~~--~~~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkq 726 (1354)
.++|++|+| .+++.|+.||+.|+.. .++ +++.++++..++.+++ .++.+.+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEF----------WEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhh----------ccCCcccCCHHHHH
Confidence 279999998 6778899999998742 222 2345555555553322 13567899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHH
Q 000680 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 727 Rv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1354)
|++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++|||++++.. ||+|++|++|++++.|+++++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999887655444468999999999999865 999999999999999999998
Q ss_pred Hhc
Q 000680 806 LLA 808 (1354)
Q Consensus 806 ~~~ 808 (1354)
...
T Consensus 232 ~~~ 234 (288)
T PRK13643 232 FQE 234 (288)
T ss_pred HcC
Confidence 653
No 140
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-37 Score=354.62 Aligned_cols=204 Identities=25% Similarity=0.379 Sum_probs=174.3
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i 660 (1354)
.++++|++++|+.....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| ++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48899999999743234699999999999999999999999999999999999999999999887 38
Q ss_pred EEEeCCCC--CCCCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000680 661 AYVSQTSW--IQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1354)
Q Consensus 661 ~yv~Q~~~--~~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1354)
+|++|+|. ++..||+|||.|+.. .++ ++..++++..++....+ ..+.+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKE-----------REPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHHHHHH
Confidence 99999984 567899999998732 222 34556666667654433 45678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhc
Q 000680 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999998876655444 38999999999999877999999999999999999988654
No 141
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=2.6e-37 Score=364.51 Aligned_cols=204 Identities=28% Similarity=0.375 Sum_probs=175.0
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eE
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SI 660 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i 660 (1354)
...++++|++++|+. .++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++| .+
T Consensus 12 ~~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~i 88 (375)
T PRK09452 12 SPLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHV 88 (375)
T ss_pred CceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 345899999999973 4589999999999999999999999999999999999999999999987 39
Q ss_pred EEEeCCCCCC-CCcHHHHHhcCCCC---CH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 000680 661 AYVSQTSWIQ-SGSIRDNILYGKPM---DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1354)
Q Consensus 661 ~yv~Q~~~~~-~~ti~eni~~g~~~---~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1354)
+|++|++.++ ..||+|||.|+... .+ ++.+++++..++...++ .++.+|||||||||+|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~p~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQ-----------RKPHQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHHHHH
Confidence 9999998776 66999999997432 22 23455566666654443 456789999999999999
Q ss_pred HHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhcC
Q 000680 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 733 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
|++.+|+++|||||||+||++.++.+.+.+..... .|.|+|+||||.+++.. +|+|++|++|+|++.|+++++....
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999998877665444 48999999999998654 9999999999999999999998754
No 142
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-37 Score=355.91 Aligned_cols=204 Identities=23% Similarity=0.375 Sum_probs=173.0
Q ss_pred EEEEeeEEEeCCCC--CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000680 595 VKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~--~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------- 658 (1354)
++++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997432 14699999999999999999999999999999999999999999998876
Q ss_pred ---eEEEEeCCC--CCCCCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHH
Q 000680 659 ---SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1354)
Q Consensus 659 ---~i~yv~Q~~--~~~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkq 726 (1354)
.|+||+|+| .+++.|++|||.|+.. .+. ++.+++++.++|..++. ..++.+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----------~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL----------ARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh----------hCCcccCCHHHHH
Confidence 289999998 5678899999998632 222 34556666666653321 2567789999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 727 Rv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
|++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999998876655444 48999999999999865 89999999999999999998
Q ss_pred HHhc
Q 000680 805 LLLA 808 (1354)
Q Consensus 805 l~~~ 808 (1354)
+.+.
T Consensus 233 ~~~~ 236 (290)
T PRK13634 233 IFAD 236 (290)
T ss_pred HhcC
Confidence 8654
No 143
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-37 Score=355.03 Aligned_cols=206 Identities=26% Similarity=0.412 Sum_probs=172.1
Q ss_pred cEEEEeeEEEeCCCC--CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000680 594 SVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~--~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------- 658 (1354)
.++++|+++.|+... .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 378999999997432 14699999999999999999999999999999999999999999998876
Q ss_pred --eEEEEeCCC--CCCCCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 000680 659 --SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1354)
Q Consensus 659 --~i~yv~Q~~--~~~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1354)
++||+||+| .+++.|++|||.|+.. .+. ++..++++.++|.. .+...+++.+||||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgGq~qr 152 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGGQKRR 152 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHHHHHH
Confidence 389999998 4678899999998632 232 23445555555531 112346678999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHH
Q 000680 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 728 v~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1354)
++||||++.+|+++||||||++||+.+.+++.+.+..... .|+|+|++||+++++.. ||+|++|++|++++.|+.+++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~ 232 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999998876655444 38999999999999865 999999999999999999998
Q ss_pred Hhc
Q 000680 806 LLA 808 (1354)
Q Consensus 806 ~~~ 808 (1354)
.+.
T Consensus 233 ~~~ 235 (287)
T PRK13637 233 FKE 235 (287)
T ss_pred HhC
Confidence 653
No 144
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2.1e-37 Score=364.02 Aligned_cols=203 Identities=28% Similarity=0.420 Sum_probs=174.1
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCC--cEEEEcC-----------e
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS--GTVNLYG-----------S 659 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~--G~i~~~g-----------~ 659 (1354)
+.++++|++++|+. ..+|+|+||+|++||+++|+|||||||||||++|+|+.+|++ |+|.++| .
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ 80 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRG 80 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCC
Confidence 46899999999973 368999999999999999999999999999999999999999 9999987 3
Q ss_pred EEEEeCCCCCC-CCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000680 660 IAYVSQTSWIQ-SGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1354)
Q Consensus 660 i~yv~Q~~~~~-~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1354)
|+||+|++.++ ..||+|||.|+.. ..+ ++.+++++..+|.+.. .+++.+|||||||||+||
T Consensus 81 ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~-----------~~~~~~LSgGq~QRvaLA 149 (362)
T TIGR03258 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAA-----------AHLPAQLSGGMQQRIAIA 149 (362)
T ss_pred EEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchh-----------hCChhhCCHHHHHHHHHH
Confidence 89999999876 5699999998642 222 2344555555554333 356779999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC--CcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~--~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
||++.+|+++|||||||+||+...+++.+.+.....+ |.|+|+||||++++.. +|+|++|++|++++.|+++++.++
T Consensus 150 RAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 150 RAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999998877655444 7899999999998765 899999999999999999999875
Q ss_pred C
Q 000680 809 G 809 (1354)
Q Consensus 809 ~ 809 (1354)
.
T Consensus 230 p 230 (362)
T TIGR03258 230 P 230 (362)
T ss_pred c
Confidence 4
No 145
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=3.3e-37 Score=362.10 Aligned_cols=201 Identities=31% Similarity=0.433 Sum_probs=172.0
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i~yv 663 (1354)
++++|+++.|+. .++|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++| +++|+
T Consensus 3 L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v 79 (353)
T PRK10851 3 IEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFV 79 (353)
T ss_pred EEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEE
Confidence 789999999964 4699999999999999999999999999999999999999999999987 49999
Q ss_pred eCCCCCCC-CcHHHHHhcCCCC-------CH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000680 664 SQTSWIQS-GSIRDNILYGKPM-------DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1354)
Q Consensus 664 ~Q~~~~~~-~ti~eni~~g~~~-------~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1354)
+|++.++. .|++||+.|+... +. ++..+.++..++.+.. ..++.+|||||||||+||
T Consensus 80 ~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LSgGq~QRvalA 148 (353)
T PRK10851 80 FQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA-----------DRYPAQLSGGQKQRVALA 148 (353)
T ss_pred ecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHHHHH
Confidence 99998764 7999999987431 21 2334445555554322 356789999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhcC
Q 000680 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
||++.+|+++|||||||+||+...+.+.+.+.....+ |+|+|+||||++.+.. ||+|++|++|++++.|+++++..++
T Consensus 149 rAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p 228 (353)
T PRK10851 149 RALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREP 228 (353)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999999998766654444 7899999999998766 8999999999999999999997654
No 146
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5e-37 Score=344.67 Aligned_cols=199 Identities=30% Similarity=0.406 Sum_probs=168.0
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i~yv 663 (1354)
++++|+++.|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v 79 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFV 79 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEE
Confidence 789999999964 4699999999999999999999999999999999999999999999876 38999
Q ss_pred eCCCCCC-CCcHHHHHhcCCCC-------CH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000680 664 SQTSWIQ-SGSIRDNILYGKPM-------DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1354)
Q Consensus 664 ~Q~~~~~-~~ti~eni~~g~~~-------~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1354)
+|+|.++ +.|++||+.++... +. ++..+.++.+++.+.. ..++.+||||||||++||
T Consensus 80 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la 148 (239)
T cd03296 80 FQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLA-----------DRYPAQLSGGQRQRVALA 148 (239)
T ss_pred ecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhh-----------hcChhhCCHHHHHHHHHH
Confidence 9999876 46999999876321 11 1233444444443322 356678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
||++.+|+++||||||++||+++.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 149 RALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 999999999999999999999999998876555444 37899999999998765 89999999999999999988764
No 147
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=4.2e-37 Score=355.95 Aligned_cols=202 Identities=24% Similarity=0.388 Sum_probs=171.4
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eE
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~i 660 (1354)
..++++|+++.|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcE
Confidence 46899999999963 4699999999999999999999999999999999999999999999976 49
Q ss_pred EEEeCCCCCC-CCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 000680 661 AYVSQTSWIQ-SGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1354)
Q Consensus 661 ~yv~Q~~~~~-~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1354)
||+||++.++ +.|++||+.+... .+. ++.+++++.+++.+.. ..+..+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKA-----------DAKVGELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHh-----------cCchhhCCHHHHHHHHHHH
Confidence 9999998776 5799999985221 121 2333445555443322 2456789999999999999
Q ss_pred HHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 733 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
|++++|++++|||||++||+...+.+++.+.....+|+|+|++||+++++.. ||+|++|++|++++.|+++++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999988765554568999999999999976 899999999999999999998653
No 148
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-37 Score=353.75 Aligned_cols=204 Identities=25% Similarity=0.423 Sum_probs=171.3
Q ss_pred EEEEeeEEEeCCCC--CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000680 595 VKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~--~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------- 658 (1354)
|+++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999997432 13699999999999999999999999999999999999999999998853
Q ss_pred -----------------------eEEEEeCCC--CCCCCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCC
Q 000680 659 -----------------------SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFD 706 (1354)
Q Consensus 659 -----------------------~i~yv~Q~~--~~~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~ 706 (1354)
.|||++|+| .++..||+|||.|+.. .++ ++..++++.++|..++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~---- 158 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESY---- 158 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh----
Confidence 279999986 4677899999998742 222 2345555555554221
Q ss_pred CCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-c
Q 000680 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-V 785 (1354)
Q Consensus 707 ~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~ 785 (1354)
.++++.+||||||||++||||++.+|+++||||||++||+...+.+.+.+.....+|+|+|+||||++.+.. |
T Consensus 159 ------~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~a 232 (305)
T PRK13651 159 ------LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWT 232 (305)
T ss_pred ------hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhC
Confidence 236678999999999999999999999999999999999999999887665544568999999999998765 8
Q ss_pred CEEEEEeCCeEEEecChHHHHhc
Q 000680 786 DRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 786 d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
|+|++|++|++++.|+++++..+
T Consensus 233 drv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 233 KRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999998654
No 149
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-37 Score=363.44 Aligned_cols=202 Identities=26% Similarity=0.382 Sum_probs=173.1
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i~y 662 (1354)
.++++|++++|+. .++|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++| .++|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~ 79 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGM 79 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEE
Confidence 4789999999963 4689999999999999999999999999999999999999999999977 3999
Q ss_pred EeCCCCCC-CCcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 000680 663 VSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1354)
Q Consensus 663 v~Q~~~~~-~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1354)
++|++.++ +.|++||+.|+.. .+ +++.+++++.+++.+.++ .+..+|||||||||+||||+
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~-----------~~~~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLD-----------RKPKALSGGQRQRVAIGRTL 148 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhc-----------CChhhCCHHHHHHHHHHHHH
Confidence 99998876 5699999998643 22 234455666666654332 55678999999999999999
Q ss_pred hcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhcC
Q 000680 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
+.+|+++||||||++||+...+.+.+.+..... .|+|+|+||||++.+.. ||+|++|++|++++.|+++++....
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p 225 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999998876655444 38899999999998765 8999999999999999999987653
No 150
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=3.9e-37 Score=345.12 Aligned_cols=199 Identities=22% Similarity=0.344 Sum_probs=166.3
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------eE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~i 660 (1354)
++++|+++.|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 467899999963 4699999999999999999999999999999999999999999998876 28
Q ss_pred EEEeCCCCCCC-CcHHHHHhcCCCCC-------------H----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCCh
Q 000680 661 AYVSQTSWIQS-GSIRDNILYGKPMD-------------K----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1354)
Q Consensus 661 ~yv~Q~~~~~~-~ti~eni~~g~~~~-------------~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSg 722 (1354)
+|++|++.++. .|++||+.++.... . ++..+.++..++. ...+.++.+|||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSg 146 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA-----------DLADRPAGELSY 146 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCcc-----------chhhCChhhCCH
Confidence 99999987765 59999998753210 1 1222333333332 123467789999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecC
Q 000680 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1354)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1354)
|||||++||||++.+|++++|||||++||+.+.+.+++.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 147 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~ 226 (236)
T cd03219 147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecC
Confidence 99999999999999999999999999999999999988766544478999999999999876 89999999999999999
Q ss_pred hHHHHh
Q 000680 802 YQELLL 807 (1354)
Q Consensus 802 ~~~l~~ 807 (1354)
++++..
T Consensus 227 ~~~~~~ 232 (236)
T cd03219 227 PDEVRN 232 (236)
T ss_pred HHHhcc
Confidence 888753
No 151
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-37 Score=352.10 Aligned_cols=205 Identities=21% Similarity=0.411 Sum_probs=170.5
Q ss_pred cEEEEeeEEEeCCCC--CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000680 594 SVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~--~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------- 658 (1354)
.++++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997432 24699999999999999999999999999999999999999999998876
Q ss_pred ----eEEEEeCCC--CCCCCcHHHHHhcCCC---CCHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 ----SIAYVSQTS--WIQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 ----~i~yv~Q~~--~~~~~ti~eni~~g~~---~~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.|||++|+| .+++.|++|||.|+.. .+.+ +..+.++.++|..+. ...++.+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~ 151 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDV----------MSQSPFQMSGGQM 151 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcccCCHHHH
Confidence 379999997 4677899999998632 2322 233444444443211 2356789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1354)
||++||||++.+|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~ 231 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPK 231 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999998876655443 48999999999999865 8999999999999999999
Q ss_pred HHHhc
Q 000680 804 ELLLA 808 (1354)
Q Consensus 804 ~l~~~ 808 (1354)
++.+.
T Consensus 232 ~~~~~ 236 (286)
T PRK13646 232 ELFKD 236 (286)
T ss_pred HHHhC
Confidence 88654
No 152
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-37 Score=349.52 Aligned_cols=199 Identities=29% Similarity=0.460 Sum_probs=171.0
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i 660 (1354)
.++++|++++|+.+ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++| .+
T Consensus 4 ~l~~~~l~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKDG--TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCCC--CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 48899999999632 4699999999999999999999999999999999999999999999877 38
Q ss_pred EEEeCCC--CCCCCcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000680 661 AYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1354)
Q Consensus 661 ~yv~Q~~--~~~~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1354)
+|++|+| .++..|++||+.|+.. .+ ++++.++++.+++.+..+ ....+||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRD-----------KPPYHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhc-----------CChhhCCHHHHHHHHHH
Confidence 9999998 5678899999998632 22 234556666666654433 45568999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHH
Q 000680 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1354)
||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++++.. ||+|++|++|++++.|+++++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999887665554458999999999999865 999999999999999998754
No 153
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.2e-36 Score=336.78 Aligned_cols=198 Identities=42% Similarity=0.792 Sum_probs=177.6
Q ss_pred EEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------
Q 000680 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------------- 658 (1354)
Q Consensus 596 ~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g----------------- 658 (1354)
.+.|++|+|+.+ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 567899999754 4699999999999999999999999999999999999999999998854
Q ss_pred eEEEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000680 659 SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1354)
Q Consensus 659 ~i~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~ 738 (1354)
.++|++|+|.+++.|++||+.++.+.+.++..++++++++.+.++.+|.|+++.++.++.+||||||||++||||++.+|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 38999999998889999999987666666677888999998888889999999889999999999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHH-HHHHh-cCCcEEEEEcCCcchhhhcCEEEEEeCCe
Q 000680 739 DIYLFDDPFSAVDAHTAATLFNE-CVMAA-LEKKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1354)
Q Consensus 739 ~illLDep~s~lD~~~~~~i~~~-~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~G~ 795 (1354)
+++||||||++||+.+.+.+.+. ++... .+++|+|++||+.+.+..+|++++|++|.
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999988773 44433 35789999999999988899999999884
No 154
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.9e-37 Score=338.74 Aligned_cols=192 Identities=31% Similarity=0.417 Sum_probs=161.9
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i~yv 663 (1354)
++++|+++.|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v 77 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMV 77 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEE
Confidence 468899999964 4699999999999999999999999999999999999999999999876 38999
Q ss_pred eCCCCCC-CCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh
Q 000680 664 SQTSWIQ-SGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 664 ~Q~~~~~-~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1354)
+|++.++ +.|++||+.++.. .+. ++..+.++.+++.+.++ +...+||||||||++||||++
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLN-----------RYPHELSGGQQQRVALARALA 146 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHHHHHHHHh
Confidence 9998765 5799999987532 122 23445555555544332 456789999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
.+|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++++.. ||++++|++|++++.|
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999998876655444 48999999999998876 8999999999998765
No 155
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=7e-37 Score=335.39 Aligned_cols=188 Identities=34% Similarity=0.503 Sum_probs=161.3
Q ss_pred EEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------eEEEEeCC
Q 000680 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAYVSQT 666 (1354)
Q Consensus 597 ~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g----------~i~yv~Q~ 666 (1354)
++|++++|+.. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|+
T Consensus 2 ~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~ 79 (205)
T cd03226 2 IENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQD 79 (205)
T ss_pred cccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecC
Confidence 57899999642 4699999999999999999999999999999999999999999999877 48999999
Q ss_pred C--CCCCCcHHHHHhcCCC---CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEE
Q 000680 667 S--WIQSGSIRDNILYGKP---MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741 (1354)
Q Consensus 667 ~--~~~~~ti~eni~~g~~---~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~il 741 (1354)
| .+++.|++||+.++.. .++++..++++.+++.+.++ .+..+||||||||++||||++.+|+++
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~~~p~ll 148 (205)
T cd03226 80 VDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKE-----------RHPLSLSGGQKQRLAIAAALLSGKDLL 148 (205)
T ss_pred hhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcC-----------CCchhCCHHHHHHHHHHHHHHhCCCEE
Confidence 7 4567899999988643 12345667777777754433 455689999999999999999999999
Q ss_pred EEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEE
Q 000680 742 LFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1354)
Q Consensus 742 lLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1354)
||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|+++
T Consensus 149 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 149 IFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999887665544568999999999999875 8999999999974
No 156
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-37 Score=358.50 Aligned_cols=203 Identities=27% Similarity=0.371 Sum_probs=170.8
Q ss_pred EEEEeeEEEeCCCC-CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000680 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------- 658 (1354)
++++|++++|+... +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 68999999997321 35799999999999999999999999999999999999999999999876
Q ss_pred -eEEEEeCCCCCCC-CcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 000680 659 -SIAYVSQTSWIQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1354)
Q Consensus 659 -~i~yv~Q~~~~~~-~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1354)
+|+|++|++.++. .|++||+.++.. .+. ++..+.++..++.+. ...++.+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDK-----------ADRYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHHHH
Confidence 3999999998764 799999987532 222 233344444444332 23567789999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 730 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
||||++++|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++++.|+.+++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999876655443 48999999999999876 89999999999999999999876
Q ss_pred c
Q 000680 808 A 808 (1354)
Q Consensus 808 ~ 808 (1354)
.
T Consensus 231 ~ 231 (343)
T PRK11153 231 H 231 (343)
T ss_pred C
Confidence 5
No 157
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.5e-37 Score=339.45 Aligned_cols=197 Identities=21% Similarity=0.369 Sum_probs=167.0
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~i~y 662 (1354)
++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEE
Confidence 468999999963 4699999999999999999999999999999999999999999999876 3899
Q ss_pred EeCCCCCCC-CcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 000680 663 VSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1354)
Q Consensus 663 v~Q~~~~~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1354)
++|++.++. .|++||+.++.. .+ .++.++.++.+++.+..+ .+..+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAAD-----------RLVKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CChhhCCHHHHHHHHHHHHH
Confidence 999987654 699999987421 21 234455666666654332 45678999999999999999
Q ss_pred hcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHH
Q 000680 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1354)
+.+|+++||||||++||+++.+.+.+.+.....+ |+|+|++||+++++.. +|++++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999988766655444 8899999999999876 899999999999999887764
No 158
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=5.5e-37 Score=339.11 Aligned_cols=190 Identities=24% Similarity=0.411 Sum_probs=160.6
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------------- 658 (1354)
++++|++++|+.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 6789999999643 24699999999999999999999999999999999999999999999876
Q ss_pred eEEEEeCCCCCC-CCcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 659 SIAYVSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 659 ~i~yv~Q~~~~~-~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
.++|++|++.++ +.|++||+.++.. .+ +++..++++.+++.+..+ ....+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAH-----------ALPMQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHHHH
Confidence 389999999775 4699999987521 11 234555666666654333 4556899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeE
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1354)
|||++++|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++++.. ||++++|++|+|
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999887665544468999999999999876 899999999975
No 159
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=6.2e-37 Score=341.37 Aligned_cols=195 Identities=31% Similarity=0.455 Sum_probs=164.6
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCc-----cCCCcEEEEcC-----------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI-----PKISGTVNLYG----------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~-----~~~~G~i~~~g----------- 658 (1354)
++++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|+|++ +|++|+|.++|
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 468999999964 36999999999999999999999999999999999999 99999998876
Q ss_pred ----eEEEEeCCCCCCCCcHHHHHhcCCCC----C----HHHHHHHHHHhccHHHHhcCCCCCcccccCC--CCCCChHH
Q 000680 659 ----SIAYVSQTSWIQSGSIRDNILYGKPM----D----KARYDKAIKACALDKDINNFDHGDLTEIGQR--GLNLSGGQ 724 (1354)
Q Consensus 659 ----~i~yv~Q~~~~~~~ti~eni~~g~~~----~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~--g~~LSgGQ 724 (1354)
.++|++|++.+++.|++||+.++... . +++..++++.+++.+.+. .+ +.+|||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~~LSgG~ 146 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVK-----------DRLHALGLSGGQ 146 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHh-----------ccCCcccCCHHH
Confidence 38999999987788999999875321 1 123445555555544332 22 57899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChH
Q 000680 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1354)
Q Consensus 725 kqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1354)
|||++||||++.+|+++||||||++||+.+.+.+++.+.....+ +|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 147 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 225 (227)
T cd03260 147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTE 225 (227)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcc
Confidence 99999999999999999999999999999999998766554444 899999999998875 8999999999999998866
Q ss_pred H
Q 000680 804 E 804 (1354)
Q Consensus 804 ~ 804 (1354)
+
T Consensus 226 ~ 226 (227)
T cd03260 226 Q 226 (227)
T ss_pred c
Confidence 5
No 160
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.4e-37 Score=338.97 Aligned_cols=197 Identities=31% Similarity=0.422 Sum_probs=165.0
Q ss_pred EEEEeeEEEeCCCC-CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------eEEEEeC
Q 000680 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQ 665 (1354)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------~i~yv~Q 665 (1354)
++++|++++|+... .+++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 46899999997421 14699999999999999999999999999999999999999999999977 4899999
Q ss_pred CCCCCC-CcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcC
Q 000680 666 TSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1354)
Q Consensus 666 ~~~~~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~ 737 (1354)
++.++. .|++||+.++.. .+ .++..+.++.+++.+.++ .+..+||||||||++||||++++
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~al~~~ 149 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFEN-----------AYPHQLSGGMRQRVALARALAVD 149 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCcccCCHHHHHHHHHHHHHHcC
Confidence 998765 799999987532 11 234455566666654333 45678999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEe--CCeEEEecCh
Q 000680 738 ADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLE--GGQITQSGNY 802 (1354)
Q Consensus 738 ~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~--~G~i~~~g~~ 802 (1354)
|+++||||||++||+.+.+.+++.+..... .++|+|++||+++.+.. ||++++|+ +|+++++++.
T Consensus 150 p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 150 PDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999876655433 47899999999998765 89999999 7999988764
No 161
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-36 Score=340.45 Aligned_cols=202 Identities=25% Similarity=0.377 Sum_probs=172.4
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i 660 (1354)
.++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4789999999963 4699999999999999999999999999999999999999999999876 38
Q ss_pred EEEeCCCCCCCCcHHHHHhcCCCC---CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcC
Q 000680 661 AYVSQTSWIQSGSIRDNILYGKPM---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1354)
Q Consensus 661 ~yv~Q~~~~~~~ti~eni~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~ 737 (1354)
+|++|++.+++.|++||+.++... ..++..+.++.+++..++ ..+++.+||||||||++||||++++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEY----------ATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHH----------hhCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999988888999999876432 233445566666664222 1256778999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 738 ADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 738 ~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 999999999999999999998876655444 48999999999999876 899999999999999999988754
No 162
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-36 Score=359.03 Aligned_cols=205 Identities=26% Similarity=0.361 Sum_probs=173.7
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eE
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SI 660 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i 660 (1354)
...++++|++++|+. .++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++| .|
T Consensus 17 ~~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i 93 (377)
T PRK11607 17 TPLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPI 93 (377)
T ss_pred CceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 346999999999963 4689999999999999999999999999999999999999999999987 38
Q ss_pred EEEeCCCCCC-CCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 000680 661 AYVSQTSWIQ-SGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1354)
Q Consensus 661 ~yv~Q~~~~~-~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1354)
||++|++-++ +.||.|||.|+.. .++ ++..+.++..++.... ..++.+|||||||||+|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~-----------~~~~~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFA-----------KRKPHQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHH
Confidence 9999999876 5699999998742 222 2334445555554322 2566799999999999999
Q ss_pred HHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhcCc
Q 000680 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAGT 810 (1354)
Q Consensus 733 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1354)
|++.+|+++|||||||+||+...+.+.+.+..... .|.|+|+||||.+++.. +|+|++|++|++++.|+++++..+..
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~ 242 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPT 242 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCc
Confidence 99999999999999999999999998876655433 47999999999998655 89999999999999999999986543
No 163
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-36 Score=346.45 Aligned_cols=203 Identities=24% Similarity=0.429 Sum_probs=174.5
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i 660 (1354)
.++++|+++.|+.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 58999999999642 34699999999999999999999999999999999999999999999987 38
Q ss_pred EEEeCCC--CCCCCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000680 661 AYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1354)
Q Consensus 661 ~yv~Q~~--~~~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1354)
+|++|+| .+++.|++|||.++.. .++ ++..++++.++|...++ .+..+||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLN-----------REPHRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhh-----------CCcccCCHHHHHHHHHH
Confidence 9999998 4667899999988632 122 34556666667765544 45568999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhc
Q 000680 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
||++.+|+++||||||++||+.+.+.+++.+.....+ |+|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999998766554444 8999999999999888999999999999999999888654
No 164
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.4e-36 Score=333.76 Aligned_cols=192 Identities=22% Similarity=0.347 Sum_probs=165.8
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i~yv 663 (1354)
++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGAL 77 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEe
Confidence 468999999963 4699999999999999999999999999999999999999999999977 38999
Q ss_pred eCCCCCC-CCcHHHHHhcCC---CCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 000680 664 SQTSWIQ-SGSIRDNILYGK---PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1354)
Q Consensus 664 ~Q~~~~~-~~ti~eni~~g~---~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ 739 (1354)
+|++.++ +.|++||+.++. ..++++.+++++..++.+.++ +++.+||||||||++||||++.+|+
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAK-----------KKVKGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHh-----------hhHhhCCHHHHHHHHHHHHHhcCCC
Confidence 9998765 679999998753 124556666777777755433 4567899999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 740 illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. +|++++|++|++++.|
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999887665544468999999999999876 8999999999998765
No 165
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-36 Score=342.53 Aligned_cols=199 Identities=31% Similarity=0.419 Sum_probs=166.0
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------------- 658 (1354)
++++|++++|+.+ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPNG--KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCCc--cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 4688999999641 4699999999999999999999999999999999999999999998876
Q ss_pred eEEEEeCCCCCCC-CcHHHHHhcCCC------------CC---HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCCh
Q 000680 659 SIAYVSQTSWIQS-GSIRDNILYGKP------------MD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1354)
Q Consensus 659 ~i~yv~Q~~~~~~-~ti~eni~~g~~------------~~---~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSg 722 (1354)
.++|++|++.++. .|++||+.++.. .. .++..+.++..++... ...++.+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDK-----------AYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhh-----------hCCCcccCCH
Confidence 3899999987654 799999987531 01 1223333444444322 2356789999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
|||||++||||++++|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 999999999999999999999999999999999999876655443 48999999999999885 8999999999999999
Q ss_pred ChHHHH
Q 000680 801 NYQELL 806 (1354)
Q Consensus 801 ~~~~l~ 806 (1354)
+++++.
T Consensus 228 ~~~~~~ 233 (241)
T cd03256 228 PPAELT 233 (241)
T ss_pred CHHHhh
Confidence 988864
No 166
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.3e-36 Score=342.33 Aligned_cols=198 Identities=30% Similarity=0.425 Sum_probs=166.4
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------------- 658 (1354)
++++|++++|+. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 678999999962 24699999999999999999999999999999999999999999999876
Q ss_pred eEEEEeCCCCCC-CCcHHHHHhcCCCC------------C---HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCCh
Q 000680 659 SIAYVSQTSWIQ-SGSIRDNILYGKPM------------D---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1354)
Q Consensus 659 ~i~yv~Q~~~~~-~~ti~eni~~g~~~------------~---~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSg 722 (1354)
.++|++|++.++ +.|++||+.++... . .++..++++.+++...+ ..++.+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKA-----------YQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCH
Confidence 289999998765 47999999875310 1 12334445555554332 356789999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999998876655433 47899999999999865 8999999999999999
Q ss_pred ChHHH
Q 000680 801 NYQEL 805 (1354)
Q Consensus 801 ~~~~l 805 (1354)
+++++
T Consensus 229 ~~~~~ 233 (243)
T TIGR02315 229 APSEL 233 (243)
T ss_pred CHHHh
Confidence 98886
No 167
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-36 Score=345.82 Aligned_cols=201 Identities=26% Similarity=0.436 Sum_probs=170.9
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------eE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~i 660 (1354)
++++|++++|+. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 678999999963 24599999999999999999999999999999999999999999998876 28
Q ss_pred EEEeCCCC--CCCCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000680 661 AYVSQTSW--IQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1354)
Q Consensus 661 ~yv~Q~~~--~~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1354)
+|++|+|. +++.|++|||.++.. .+. ++..++++.+++.... ...+.+||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYR-----------HRSPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHh-----------cCCcccCCHHHHHHHHHH
Confidence 99999985 467899999988632 222 2344555555554433 255678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhc
Q 000680 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
||++.+|+++||||||++||+.+.+.+++.+.....+|+|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999887765544568999999999999977999999999999999999987643
No 168
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.7e-36 Score=336.81 Aligned_cols=198 Identities=30% Similarity=0.471 Sum_probs=165.0
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------eE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~i 660 (1354)
++++|++++|+. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 468999999963 3699999999999999999999999999999999999999999999876 28
Q ss_pred EEEeCCCCCCC-CcHHHHHhcCCCCC-----HHHHHHHHHHh-ccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 000680 661 AYVSQTSWIQS-GSIRDNILYGKPMD-----KARYDKAIKAC-ALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1354)
Q Consensus 661 ~yv~Q~~~~~~-~ti~eni~~g~~~~-----~~~~~~~~~~~-~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARa 733 (1354)
+|++|++.++. .|++||+.++.... .++..++++.. .+.. ....++.+||||||||++||||
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-----------~~~~~~~~LS~G~~qrv~lara 146 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKE-----------RRKQLAGTLSGGEQQMLAIARA 146 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhh-----------hhhCchhhCCHHHHHHHHHHHH
Confidence 99999997765 59999998764321 11222333332 1211 1236678999999999999999
Q ss_pred HhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHH
Q 000680 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806 (1354)
Q Consensus 734 l~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 806 (1354)
++.+|++++|||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|+.+++.
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 147 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred HhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 999999999999999999999999887665544468999999999998766 8999999999999999888764
No 169
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.6e-36 Score=359.59 Aligned_cols=201 Identities=24% Similarity=0.429 Sum_probs=173.1
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i 660 (1354)
.++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| ++
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4789999999963 4699999999999999999999999999999999999999999999987 38
Q ss_pred EEEeCCCCC-CCCcHHHHHhcCCC-----C------CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 000680 661 AYVSQTSWI-QSGSIRDNILYGKP-----M------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1354)
Q Consensus 661 ~yv~Q~~~~-~~~ti~eni~~g~~-----~------~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1354)
||++|++.+ ++.|++||+.++.. + +.++.+++++..++.+.. .....+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~-----------~~~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFA-----------DRPVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHH
Confidence 999999876 68899999988641 1 123445556655554332 245678999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 729 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
+||||++++|+++||||||++||+.....+.+.+.....+|+|+|++||+++.+.+ ||++++|++|++++.|++++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999887665554468899999999999865 89999999999999999999875
Q ss_pred c
Q 000680 808 A 808 (1354)
Q Consensus 808 ~ 808 (1354)
.
T Consensus 229 ~ 229 (402)
T PRK09536 229 A 229 (402)
T ss_pred c
Confidence 4
No 170
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.5e-36 Score=354.64 Aligned_cols=203 Identities=26% Similarity=0.406 Sum_probs=171.3
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------e
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------S 659 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~ 659 (1354)
...|+++|++++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 39 ~~~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ 115 (340)
T PRK13536 39 TVAIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARAR 115 (340)
T ss_pred ceeEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhcc
Confidence 346999999999973 4699999999999999999999999999999999999999999999987 3
Q ss_pred EEEEeCCCCCC-CCcHHHHHhcC-CC--CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000680 660 IAYVSQTSWIQ-SGSIRDNILYG-KP--MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1354)
Q Consensus 660 i~yv~Q~~~~~-~~ti~eni~~g-~~--~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1354)
+||+||++.++ ..|++||+.+. .. .+. ++.+++++.++|.+.. .++..+||||||||++||
T Consensus 116 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~-----------~~~~~~LS~G~kqrv~lA 184 (340)
T PRK13536 116 IGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-----------DARVSDLSGGMKRRLTLA 184 (340)
T ss_pred EEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------CCChhhCCHHHHHHHHHH
Confidence 99999998874 67999999752 11 121 2233344444443221 256678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
||++++|+++||||||++||+.+.+.+++.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 185 ~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 185 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999999999988766555568999999999999976 899999999999999999998643
No 171
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.1e-36 Score=337.18 Aligned_cols=191 Identities=28% Similarity=0.411 Sum_probs=159.0
Q ss_pred EEEEeeEEEeCCCC-CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000680 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------- 658 (1354)
++++|++++|+... .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999997421 14699999999999999999999999999999999999999999998865
Q ss_pred --eEEEEeCCCCCCC-CcHHHHHhcCCCC---C----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 000680 659 --SIAYVSQTSWIQS-GSIRDNILYGKPM---D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1354)
Q Consensus 659 --~i~yv~Q~~~~~~-~ti~eni~~g~~~---~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1354)
.++|++|++.++. .|++||+.++... + +++..++++.+++.+.+ ..++.+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRL-----------NHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhh-----------hcChhhcCHHHHHHH
Confidence 3899999988765 5999999885321 1 12344455555554322 356678999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhhcCEEEEEeCCeE
Q 000680 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1354)
Q Consensus 729 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i 796 (1354)
+||||++.+|+++||||||++||+.+.+.+.+.+..... +++|+|++||+++.+..||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999998876655444 48999999999998877899999999974
No 172
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-36 Score=338.31 Aligned_cols=197 Identities=24% Similarity=0.348 Sum_probs=164.8
Q ss_pred cEEEEeeEEEeCCCC-CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000680 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------- 658 (1354)
.++++|+++.|+.+. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 488999999997432 14699999999999999999999999999999999999999999999876
Q ss_pred ---eEEEEeCCCCCCC-CcHHHHHhcCC---CCCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 000680 659 ---SIAYVSQTSWIQS-GSIRDNILYGK---PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1354)
Q Consensus 659 ---~i~yv~Q~~~~~~-~ti~eni~~g~---~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1354)
.++|++|++.++. .|++||+.++. ..+. ++..++++.+++.+. ..+++.+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHR-----------ANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHH
Confidence 3899999987764 59999998742 1221 234445555555332 235667899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecC
Q 000680 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1354)
Q Consensus 728 v~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 801 (1354)
++||||++.+|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+..+|++++|++|++++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 9999999999999999999999999999998876655443 5899999999999998889999999999998765
No 173
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=2.3e-36 Score=350.46 Aligned_cols=201 Identities=26% Similarity=0.391 Sum_probs=169.8
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eE
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~i 660 (1354)
..++++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 3 ~~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i 79 (303)
T TIGR01288 3 VAIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAI 79 (303)
T ss_pred cEEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcE
Confidence 46899999999963 4699999999999999999999999999999999999999999999876 48
Q ss_pred EEEeCCCCCC-CCcHHHHHhcC-C--CCCHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 000680 661 AYVSQTSWIQ-SGSIRDNILYG-K--PMDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1354)
Q Consensus 661 ~yv~Q~~~~~-~~ti~eni~~g-~--~~~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1354)
||+||++.++ ..|++||+.+. . ..+.. +.+++++.+++.+.. ..+..+||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-----------DVRVALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHh-----------cCchhhCCHHHHHHHHHHH
Confidence 9999998776 57999999742 1 12222 233344444443322 2556789999999999999
Q ss_pred HHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 733 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
|++++|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999987766555568999999999999876 89999999999999999999864
No 174
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-36 Score=347.54 Aligned_cols=204 Identities=24% Similarity=0.423 Sum_probs=170.3
Q ss_pred cEEEEeeEEEeCCCC--CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000680 594 SVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~--~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------- 658 (1354)
.++++|+++.|++.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997421 24699999999999999999999999999999999999999999998876
Q ss_pred ----eEEEEeCCC--CCCCCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 ----SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 ----~i~yv~Q~~--~~~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|+| .+++.|++||+.++.. ... ++..++++.+++..++ ...++.+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDL----------ISKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhH----------hhCCcccCCHHHH
Confidence 279999997 4667899999987531 222 2344455555554221 1356789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
||++||||++.+|+++||||||++||+...+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999887665544468999999999999865 89999999999999999998
Q ss_pred HHh
Q 000680 805 LLL 807 (1354)
Q Consensus 805 l~~ 807 (1354)
+.+
T Consensus 232 ~~~ 234 (287)
T PRK13641 232 IFS 234 (287)
T ss_pred Hhc
Confidence 764
No 175
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.9e-36 Score=330.01 Aligned_cols=189 Identities=25% Similarity=0.471 Sum_probs=163.7
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------e
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~ 659 (1354)
+.++++|++++|+.. ..++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 568999999999743 24699999999999999999999999999999999999999999999876 4
Q ss_pred EEEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 000680 660 IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1354)
Q Consensus 660 i~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ 739 (1354)
++|++|+|.+++.|++||+.+...++.++..+.++ +++++.+||||||||++||||++.+|+
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999988899999998654444332222221 246778999999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecC
Q 000680 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1354)
Q Consensus 740 illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 801 (1354)
++||||||++||+...+.+.+.+... .+++|+|++||+++.+..+|++++|++|++.+.|+
T Consensus 146 llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 146 VLVLDEATASIDYATDALIQKTIREE-FTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 99999999999999999887765544 46899999999999987899999999999998775
No 176
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.8e-34 Score=313.78 Aligned_cols=504 Identities=15% Similarity=0.146 Sum_probs=320.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 000680 269 KVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESF-TQRHCFFGSRRSGM 347 (1354)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~ 347 (1354)
-.++|.+++.++....+.+...+ ++-.++-.+-++.-+..+.......+.+++.+..++.+. +..--.+..+..-.
T Consensus 5 l~llr~nr~~~i~~~a~s~a~g~---~g~~lLa~in~al~e~~~~~~~~l~~f~~llllf~~ss~is~lg~t~~gq~~I~ 81 (546)
T COG4615 5 LLLLRQNRWPFISVMALSLASGA---LGIGLLAFINQALIETADTSLLVLPEFLGLLLLFMVSSLISQLGLTTLGQHFIY 81 (546)
T ss_pred HHHhcccccHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhcccceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788777665544443333 333333333333322222111111122222222222221 12112223333444
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000680 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLF 427 (1354)
Q Consensus 348 rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~ 427 (1354)
++|..++..|..--+ ..-.+..++.+..-++.|+..|.-.+..+..+-.+.+-+..++..|+.+-+...+..++.+
T Consensus 82 klr~~~~~kil~tpl----erier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~i 157 (546)
T COG4615 82 KLRSEFIKKILDTPL----ERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWI 157 (546)
T ss_pred HHHHHHHHHHhcCHH----HHHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 666665554443222 2223456788999999999998866666666655555566666677766665555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHH-
Q 000680 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEE--KFKS-LIESRREKEFKWLSEAQLRKAYG- 503 (1354)
Q Consensus 428 ~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~--~f~~-~i~~~R~~El~~l~~~~~~~~~~- 503 (1354)
++.+..+.....+..++..+..+..|+-.+..+.++.|-|.+|+..=.. .+.+ .+...++.|- ...+...+.
T Consensus 158 vv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~----~~~~~n~f~~ 233 (546)
T COG4615 158 VVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRH----HIIRANTFHL 233 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHh----hhhhhhHHHH
Confidence 6666667666666666677777888999999999999999998865322 1222 2222333221 111112221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcch
Q 000680 504 TVIYWMSPTIISSVIFLGCALTGSAPL-NASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDD 582 (1354)
Q Consensus 504 ~~~~~~~p~~v~~~~f~~~~l~~~~~L-t~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~ 582 (1354)
....|..-.+.+++....|.... -.. +...+.|.....-.++.|+.+....++.+.+|.++++||.++=.+|+...-.
T Consensus 234 la~~~~ni~l~~lIGlvf~lal~-~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~ 312 (546)
T COG4615 234 LAVNWSNIMLLGLIGLVFWLALS-LGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFP 312 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCC
Confidence 12223322222222211111111 011 1224444444455679999999999999999999999999985444332111
Q ss_pred hhhccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe---
Q 000680 583 VRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--- 659 (1354)
Q Consensus 583 ~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~--- 659 (1354)
+....++-..++++|+.|+|.+. ..-+..||++|++||++-|+|.||||||||++.+.|+++|++|+|.++|+
T Consensus 313 --~~q~~p~~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~ 388 (546)
T COG4615 313 --RPQAFPDWKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVS 388 (546)
T ss_pred --CCCcCCcccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCC
Confidence 11111224579999999999864 36789999999999999999999999999999999999999999999984
Q ss_pred ----------EEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 000680 660 ----------IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1354)
Q Consensus 660 ----------i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1354)
++-|+-+-|+|+.+ +-++. -.++..++.++..++....+ +.+|..+ ...||-|||+|+
T Consensus 389 ~e~ledYR~LfSavFsDyhLF~~l-----l~~e~~as~q~i~~~LqrLel~~kts-l~d~~fs-----~~kLStGQkKRl 457 (546)
T COG4615 389 AEQLEDYRKLFSAVFSDYHLFDQL-----LGPEGKASPQLIEKWLQRLELAHKTS-LNDGRFS-----NLKLSTGQKKRL 457 (546)
T ss_pred CCCHHHHHHHHHHHhhhHhhhHhh-----hCCccCCChHHHHHHHHHHHHhhhhc-ccCCccc-----ccccccchHHHH
Confidence 22333333433322 11222 34566677777666665443 3444433 256999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHH-hcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEe
Q 000680 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA-ALEKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1354)
Q Consensus 729 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~-~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1354)
++--|+.-+.|||++||=-+.-||+-++..++..+-. ..+||||+.||||-.+...|||++.|++|++++.
T Consensus 458 All~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 458 ALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred HHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 9999999999999999999999999999988877643 4579999999999999999999999999999864
No 177
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-36 Score=339.76 Aligned_cols=197 Identities=27% Similarity=0.316 Sum_probs=168.2
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------eEEEEe
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVS 664 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------~i~yv~ 664 (1354)
..++++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++
T Consensus 11 ~~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~ 87 (257)
T PRK11247 11 TPLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMF 87 (257)
T ss_pred CcEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEe
Confidence 46999999999963 4699999999999999999999999999999999999999999999876 489999
Q ss_pred CCCCCCC-CcHHHHHhcCCCC-CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEE
Q 000680 665 QTSWIQS-GSIRDNILYGKPM-DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742 (1354)
Q Consensus 665 Q~~~~~~-~ti~eni~~g~~~-~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ill 742 (1354)
|++.+++ .|++||+.++... .+++..+.++..++.+.+ .+++.+||||||||++||||++.+|+++|
T Consensus 88 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGqkqrl~laraL~~~p~lll 156 (257)
T PRK11247 88 QDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRA-----------NEWPAALSGGQKQRVALARALIHRPGLLL 156 (257)
T ss_pred cCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9987765 7999999986321 234455666666665433 35677999999999999999999999999
Q ss_pred EeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChH
Q 000680 743 FDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1354)
Q Consensus 743 LDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1354)
|||||++||+.+.+.+.+.+..... .++|+|++||+++++.. ||+|++|++|++++.|+.+
T Consensus 157 LDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 157 LDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999998876655433 47899999999999865 8999999999999887654
No 178
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=2.7e-36 Score=338.03 Aligned_cols=200 Identities=24% Similarity=0.389 Sum_probs=168.6
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~i~y 662 (1354)
++++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| .++|
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGV 78 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEE
Confidence 678999999963 4699999999999999999999999999999999999999999999876 3899
Q ss_pred EeCCCCC-CCCcHHHHHhcCCC---CCHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 000680 663 VSQTSWI-QSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1354)
Q Consensus 663 v~Q~~~~-~~~ti~eni~~g~~---~~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1354)
++|++.+ +..|++||+.++.. ...+ +..+.++..++.+ ..++++.+||||||||++||||+
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrl~laral 147 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAE-----------RADDKVRELNGGHRRRVEIARAL 147 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHHHHHHHH
Confidence 9999876 57899999986532 2221 2233344433332 23466789999999999999999
Q ss_pred hcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhc
Q 000680 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
+.+|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+..||++++|++|++++.|+++++.++
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 999999999999999999999999876655443 58999999999999888999999999999999999888654
No 179
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-36 Score=342.34 Aligned_cols=205 Identities=24% Similarity=0.390 Sum_probs=171.0
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC---------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG--------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~-----~~~G~i~~~g--------- 658 (1354)
..++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+.+ |++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (253)
T PRK14242 5 PKMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81 (253)
T ss_pred cEEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence 46899999999963 369999999999999999999999999999999999864 5899998865
Q ss_pred ------eEEEEeCCCCCCCCcHHHHHhcCCC---C-C----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHH
Q 000680 659 ------SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1354)
Q Consensus 659 ------~i~yv~Q~~~~~~~ti~eni~~g~~---~-~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQ 724 (1354)
.++|++|++.+++.|++||+.++.. . . +++.++.++.+++.+.+. +..++.+.+|||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 154 (253)
T PRK14242 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQ 154 (253)
T ss_pred HHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHH
Confidence 3899999998887899999987521 1 1 223444555555543222 12346778999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChH
Q 000680 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1354)
Q Consensus 725 kqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1354)
||||+||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 155 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14242 155 QQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHEL-KARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTE 233 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999988765544 457899999999999865 8999999999999999999
Q ss_pred HHHhc
Q 000680 804 ELLLA 808 (1354)
Q Consensus 804 ~l~~~ 808 (1354)
++.+.
T Consensus 234 ~~~~~ 238 (253)
T PRK14242 234 QIFTR 238 (253)
T ss_pred HHHcC
Confidence 88644
No 180
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-36 Score=346.19 Aligned_cols=198 Identities=29% Similarity=0.389 Sum_probs=166.3
Q ss_pred EEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------e
Q 000680 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------S 659 (1354)
Q Consensus 597 ~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------------~ 659 (1354)
++|+++.|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 27 ~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 27 KEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 4566666653 4689999999999999999999999999999999999999999998865 3
Q ss_pred EEEEeCCCCCC-CCcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000680 660 IAYVSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1354)
Q Consensus 660 i~yv~Q~~~~~-~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1354)
++|++|++.++ +.|++||+.++.. .+ .++..++++.+++.+.++ ....+||||||||++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qrv~lA 172 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEH-----------KYPDELSGGMQQRVGLA 172 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CCcccCCHHHHHHHHHH
Confidence 89999999876 5799999987521 22 234455666666654443 45568999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
||++.+|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999998876655433 48999999999998865 899999999999999999998754
No 181
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-36 Score=340.66 Aligned_cols=204 Identities=25% Similarity=0.359 Sum_probs=172.1
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc---CCCcEEEEcC------------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---KISGTVNLYG------------ 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~---~~~G~i~~~g------------ 658 (1354)
.|+++|+++.|+. +++|+|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 4789999999963 469999999999999999999999999999999999974 6899999876
Q ss_pred -eEEEEeCCCCCCCCcHHHHHhcCCCC---------CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 000680 659 -SIAYVSQTSWIQSGSIRDNILYGKPM---------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1354)
Q Consensus 659 -~i~yv~Q~~~~~~~ti~eni~~g~~~---------~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1354)
.++|++|++.+++.|++||+.++... ..++..+.++.+++.+.+.. ...+++.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHH
Confidence 38999999998889999999875311 11234556666666543332 13467789999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 729 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
+||||++++|++++|||||++||+++.+.+.+.+... .+++|+|++||+++.+.. +|++++|++|++++.|+.+++..
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKEL-SHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-hCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999887755443 458999999999998875 89999999999999999998864
Q ss_pred c
Q 000680 808 A 808 (1354)
Q Consensus 808 ~ 808 (1354)
.
T Consensus 231 ~ 231 (246)
T PRK14269 231 N 231 (246)
T ss_pred C
Confidence 3
No 182
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=3.4e-36 Score=335.22 Aligned_cols=205 Identities=29% Similarity=0.439 Sum_probs=175.6
Q ss_pred CCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------
Q 000680 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1354)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------ 658 (1354)
..+.++++|++++|+.....++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 44679999999999753234699999999999999999999999999999999999999999999876
Q ss_pred -eEEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhc
Q 000680 659 -SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN 736 (1354)
Q Consensus 659 -~i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~ 736 (1354)
.++|++|++.+++.|++||+.++.. .....+.+..+...+.+.++.++.|-.+.+++++.+||||||||++||||+++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 3899999998888899999998643 22223333444455677788887776677788899999999999999999999
Q ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeE
Q 000680 737 DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1354)
Q Consensus 737 ~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i 796 (1354)
+|+++||||||++||++..+.+.+.+... .+++|+|++||+++++..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDW-PERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999987765543 346899999999999988999999999974
No 183
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-36 Score=337.97 Aligned_cols=202 Identities=27% Similarity=0.406 Sum_probs=168.3
Q ss_pred EEEEeeEEEeCCCC-CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000680 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------- 658 (1354)
++++|++++|+... ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 67899999996431 12699999999999999999999999999999999999999999998865
Q ss_pred -eEEEEeCCCCCCC-CcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 000680 659 -SIAYVSQTSWIQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1354)
Q Consensus 659 -~i~yv~Q~~~~~~-~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1354)
.++|++|++.++. .|++||+.++.. .+. ++..+.++..++.+.+ ..+..+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKA-----------DAYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------hcChhhCCHHHHHHHH
Confidence 3899999998775 799999987522 221 2334444444444322 3566789999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 730 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
||||++.+|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++.+.. ||++++|++|++++.|+.+++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999988766554443 8999999999999876 89999999999999999888753
No 184
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.9e-36 Score=334.09 Aligned_cols=189 Identities=37% Similarity=0.572 Sum_probs=159.7
Q ss_pred EEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------eEEEEeCCCC
Q 000680 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQTSW 668 (1354)
Q Consensus 597 ~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------~i~yv~Q~~~ 668 (1354)
++|++++|+. .++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .++|++|++.
T Consensus 2 ~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~ 78 (213)
T cd03235 2 VEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRS 78 (213)
T ss_pred cccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccc
Confidence 5789999963 4689999999999999999999999999999999999999999999987 3999999986
Q ss_pred C---CCCcHHHHHhcCCCC-----------CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 000680 669 I---QSGSIRDNILYGKPM-----------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1354)
Q Consensus 669 ~---~~~ti~eni~~g~~~-----------~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1354)
+ ++.|++||+.++... .+++.+++++.+++.+.++ .+..+||||||||++||||+
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~al 147 (213)
T cd03235 79 IDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD-----------RQIGELSGGQQQRVLLARAL 147 (213)
T ss_pred cccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHh-----------CCcccCCHHHHHHHHHHHHH
Confidence 5 457999999875321 1234556666666654433 45678999999999999999
Q ss_pred hcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
+.+|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++++.. ||++++|++| +++.|
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999887666544478999999999999876 8999999886 55543
No 185
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=2.2e-36 Score=334.85 Aligned_cols=195 Identities=21% Similarity=0.355 Sum_probs=163.5
Q ss_pred EEEEeeEEEeCCCC-CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEE
Q 000680 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIA 661 (1354)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~i~ 661 (1354)
++++|++++|+... ..++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 67899999997431 12699999999999999999999999999999999999999999999876 389
Q ss_pred EEeCCCCCCC-CcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 000680 662 YVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1354)
Q Consensus 662 yv~Q~~~~~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARa 733 (1354)
|++|++.++. .|++||+.+... .+ .++..+.++..++.+.+ .+++.+||||||||++||||
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~lara 150 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELL-----------DRRVGGFSTGMRQKVAIARA 150 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hhhhhhcCHHHHHHHHHHHH
Confidence 9999998766 599999976321 11 22344555555554333 35678999999999999999
Q ss_pred HhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 734 l~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. +|++++|++|++++.|
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999887665554568999999999998876 8999999999998754
No 186
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-36 Score=345.71 Aligned_cols=202 Identities=26% Similarity=0.448 Sum_probs=172.4
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------- 658 (1354)
.++++|+++.|+. +.++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 5899999999963 24699999999999999999999999999999999999999999999876
Q ss_pred eEEEEeCCC--CCCCCcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 000680 659 SIAYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1354)
Q Consensus 659 ~i~yv~Q~~--~~~~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1354)
.++|++|+| .+++.|++||+.++.. +. .++..++++.+++.... ..++.+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK-----------DKPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------hCCcccCCHHHHHHHH
Confidence 289999998 4678899999987521 22 23445556666665432 3567899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 730 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
||||++.+|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999988766554443 8999999999999875 99999999999999999999865
Q ss_pred c
Q 000680 808 A 808 (1354)
Q Consensus 808 ~ 808 (1354)
.
T Consensus 232 ~ 232 (283)
T PRK13636 232 E 232 (283)
T ss_pred C
Confidence 4
No 187
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=2.6e-36 Score=337.59 Aligned_cols=199 Identities=23% Similarity=0.401 Sum_probs=166.3
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------eE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~i 660 (1354)
++++|+++.|+. +++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 468899999963 4699999999999999999999999999999999999999999998865 38
Q ss_pred EEEeCCCCCCC-CcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 000680 661 AYVSQTSWIQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1354)
Q Consensus 661 ~yv~Q~~~~~~-~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1354)
+|++|++.++. .|++||+.++.. ... ++.++.++..++.+. ..+.+.+||||||||++|||
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la~ 146 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHL-----------RKSKASSLSGGERRRVEIAR 146 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHHHHHH
Confidence 99999987765 599999987532 111 122334444444322 23667899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 733 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
|++.+|++++|||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|+.+++..
T Consensus 147 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 147 ALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999999999999999999999887665544468999999999988766 89999999999999999888754
No 188
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-36 Score=329.78 Aligned_cols=206 Identities=27% Similarity=0.411 Sum_probs=174.5
Q ss_pred cEEEEeeEEEeCCCC---------------------CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCc
Q 000680 594 SVKIQEGNFSWDPEL---------------------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISG 652 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~---------------------~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G 652 (1354)
.|+++|++.-+..+. ...-++|+||+|+.||+.+|.|-+|||||||++++.++.+|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 567777777665432 12347899999999999999999999999999999999999999
Q ss_pred EEEEcC-----------------eEEEEeCCCC-CCCCcHHHHHhcCCCCC-------HHHHHHHHHHhccHHHHhcCCC
Q 000680 653 TVNLYG-----------------SIAYVSQTSW-IQSGSIRDNILYGKPMD-------KARYDKAIKACALDKDINNFDH 707 (1354)
Q Consensus 653 ~i~~~g-----------------~i~yv~Q~~~-~~~~ti~eni~~g~~~~-------~~~~~~~~~~~~l~~~l~~l~~ 707 (1354)
+|.++| +++.|+|+.- +++.||.||+.||.+.. +++..++++..+|+..-+
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~---- 159 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYAD---- 159 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhh----
Confidence 999988 4999999965 57789999999997632 334555666677766544
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-c
Q 000680 708 GDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-V 785 (1354)
Q Consensus 708 gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~ 785 (1354)
.++.+||||+||||.|||||..+|||+|+|||||||||-.+..+-++++.... -+||+|+||||+++.-+ .
T Consensus 160 -------~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 160 -------KYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred -------cCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 45668999999999999999999999999999999999999999888876543 37899999999998655 7
Q ss_pred CEEEEEeCCeEEEecChHHHHhcCc
Q 000680 786 DRILVLEGGQITQSGNYQELLLAGT 810 (1354)
Q Consensus 786 d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1354)
|||.+|+||+|++.|+++|+..++.
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PA 257 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPA 257 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCcc
Confidence 9999999999999999999997654
No 189
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.1e-36 Score=345.32 Aligned_cols=201 Identities=26% Similarity=0.439 Sum_probs=176.2
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIA 661 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~i~ 661 (1354)
.++++|++..|+. ++.+|+||||+|++||+++++||||||||||+++|+|+.+|++|+|.+.| ++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheE
Confidence 4778999999973 24699999999999999999999999999999999999999999999987 499
Q ss_pred EEeCCCCC-CCCcHHHHHhcC-----CC--CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 000680 662 YVSQTSWI-QSGSIRDNILYG-----KP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1354)
Q Consensus 662 yv~Q~~~~-~~~ti~eni~~g-----~~--~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARa 733 (1354)
|+||+|.+ ...|++||+.|- .+ .++++.+++++..+|.++. ..+..+||+|||||++||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHHH
Confidence 99999975 567999999873 22 2355777888877776522 25677899999999999999
Q ss_pred HhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCC-cEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-KTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 734 l~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~-~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
|.++|++++|||||+||||..++.+++.+.....+| +||+++||.++.+.. ||+|++|++|++++.|+.+++..
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 999999999999999999999999988777666666 799999999999887 89999999999999999988754
No 190
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=3.1e-36 Score=334.13 Aligned_cols=198 Identities=24% Similarity=0.427 Sum_probs=166.9
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~i~y 662 (1354)
++++|+++.|+.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence 4689999999642 24699999999999999999999999999999999999999999999876 3899
Q ss_pred EeCCCCCC-CCcHHHHHhcCC---CCC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 000680 663 VSQTSWIQ-SGSIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1354)
Q Consensus 663 v~Q~~~~~-~~ti~eni~~g~---~~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1354)
++|++.++ +.|++||+.++. ... .++..++++.+++.+.+ .....+||||||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-----------NKRARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hChhhhCCHHHHHHHHHHHHH
Confidence 99998776 679999998642 122 23445566666664333 245678999999999999999
Q ss_pred hcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHH
Q 000680 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1354)
+.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEV-RKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHH-hcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999988765543 346899999999999876 899999999999999988764
No 191
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-36 Score=340.59 Aligned_cols=205 Identities=29% Similarity=0.393 Sum_probs=170.7
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC---------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-----~~G~i~~~g--------- 658 (1354)
..++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 46899999999963 3699999999999999999999999999999999999987 489998865
Q ss_pred ------eEEEEeCCCCCCCCcHHHHHhcCCC----CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHH
Q 000680 659 ------SIAYVSQTSWIQSGSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1354)
Q Consensus 659 ------~i~yv~Q~~~~~~~ti~eni~~g~~----~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQ 724 (1354)
.++|++|++.+++.|++|||.++.. .+. ++..+.++.+++.+.+. .....++.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgG~ 155 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK-------DKLNTNALSLSGGQ 155 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH-------HHHhCCcccCCHHH
Confidence 3899999998888999999988632 121 23344445555432221 11235678999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChH
Q 000680 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1354)
Q Consensus 725 kqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1354)
|||++||||++.+|+++||||||++||+.+.+.+++.+... .+++|+|++||+++++.. +|++++|++|++++.|+++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 234 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL-KESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTD 234 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999988765544 457899999999999866 8999999999999999999
Q ss_pred HHHhc
Q 000680 804 ELLLA 808 (1354)
Q Consensus 804 ~l~~~ 808 (1354)
++.++
T Consensus 235 ~~~~~ 239 (254)
T PRK14273 235 ELFFN 239 (254)
T ss_pred HHHhC
Confidence 98654
No 192
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=2.1e-36 Score=333.76 Aligned_cols=192 Identities=30% Similarity=0.426 Sum_probs=161.9
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i~yv 663 (1354)
++++|++++|+. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~ 77 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMV 77 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEE
Confidence 468999999974 3699999999999999999999999999999999999999999999876 38999
Q ss_pred eCCCCCC-CCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh
Q 000680 664 SQTSWIQ-SGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 664 ~Q~~~~~-~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1354)
+|++.++ +.|++||+.++.. ... ++..+.++..++.+.+ ...+.+||||||||++||||++
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qr~~laral~ 146 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLL-----------DRKPKQLSGGQRQRVALGRAIV 146 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHH-----------hCChhhCCHHHHHHHHHHHHHh
Confidence 9999876 5699999987521 222 2334445555554332 3566789999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
.+|++++|||||++||+++.+.+.+.+..... +++|+|++||+++.+.. +|++++|++|++++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999998876655444 48999999999998876 8999999999998765
No 193
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=4.2e-36 Score=338.86 Aligned_cols=203 Identities=29% Similarity=0.421 Sum_probs=169.1
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCC-----CcEEEEcC-----------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-----SGTVNLYG----------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~-----~G~i~~~g----------- 658 (1354)
++++|++++|+. .++++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 689999999974 35899999999999999999999999999999999999998 99998865
Q ss_pred ----eEEEEeCCCCCCCCcHHHHHhcCCC----CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHH
Q 000680 659 ----SIAYVSQTSWIQSGSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1354)
Q Consensus 659 ----~i~yv~Q~~~~~~~ti~eni~~g~~----~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkq 726 (1354)
.++|+||++.+++.|++||+.++.. .+. ++..++++..++.++++ .....++.+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 3899999998888999999987521 111 23344455555542221 1234667899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHH
Q 000680 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 727 Rv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1354)
|++||||++.+|+++||||||++||+.+.+.+++.+... .+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQEL-KKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999987755443 335899999999998875 899999999999999999988
Q ss_pred Hhc
Q 000680 806 LLA 808 (1354)
Q Consensus 806 ~~~ 808 (1354)
.++
T Consensus 231 ~~~ 233 (247)
T TIGR00972 231 FTN 233 (247)
T ss_pred HhC
Confidence 643
No 194
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-36 Score=310.60 Aligned_cols=201 Identities=25% Similarity=0.344 Sum_probs=172.6
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~i~y 662 (1354)
+++.+.+.+|++ ...+++|+||++++||+++|.|+||+||||+|+.|.+++.|++|+|.++| +||.
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcce
Confidence 567888999975 34589999999999999999999999999999999999999999999987 5888
Q ss_pred EeCCCCC-CCCcHHHHHhcCCC-C------CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 000680 663 VSQTSWI-QSGSIRDNILYGKP-M------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1354)
Q Consensus 663 v~Q~~~~-~~~ti~eni~~g~~-~------~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1354)
++-+.-+ ...|+||||.|... + -+.+..+..+..++.+-++ .+..++|-||||||++|||+
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~-----------rRv~~~S~G~kqkV~iARAl 148 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-----------RRVGEFSTGMKQKVAIARAL 148 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHH-----------HHHhhhchhhHHHHHHHHHH
Confidence 8865444 56799999986321 1 2456666777777766554 57778999999999999999
Q ss_pred hcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
++||++++||||+||||..+.+.+.+.+......|+++|+.||.++.++. ||+|+++++|+++..|+.+++.+.
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 99999999999999999999998777666666679999999999999985 999999999999999999998754
No 195
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-36 Score=344.19 Aligned_cols=204 Identities=22% Similarity=0.350 Sum_probs=173.5
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCC---cEEEEcC-----------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS---GTVNLYG----------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~---G~i~~~g----------- 658 (1354)
..++++|+++.|+.. ..++++|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 468999999999643 2469999999999999999999999999999999999999987 8998876
Q ss_pred --eEEEEeCCCC--CCCCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 000680 659 --SIAYVSQTSW--IQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1354)
Q Consensus 659 --~i~yv~Q~~~--~~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1354)
.+||++|+|. +++.|++||+.|+.. .+. ++..++++.+++.+.++ ....+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYID-----------SEPANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhc-----------CCcccCCHHHHHH
Confidence 3899999984 568899999998632 222 23455666666654333 5567999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHH
Q 000680 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806 (1354)
Q Consensus 728 v~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 806 (1354)
++||||++++|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999998876655444 389999999999998779999999999999999999886
Q ss_pred hc
Q 000680 807 LA 808 (1354)
Q Consensus 807 ~~ 808 (1354)
..
T Consensus 232 ~~ 233 (282)
T PRK13640 232 SK 233 (282)
T ss_pred cC
Confidence 53
No 196
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-36 Score=339.28 Aligned_cols=203 Identities=28% Similarity=0.397 Sum_probs=167.6
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~ 661 (1354)
++++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| .++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4688999999742 4699999999999999999999999999999999999999999999876 389
Q ss_pred EEeCCCCCC-CCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 000680 662 YVSQTSWIQ-SGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1354)
Q Consensus 662 yv~Q~~~~~-~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARa 733 (1354)
|++|+|.++ ..|++||+.++.. .+. ++..+.++..++.. .....+++.+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHH
Confidence 999999876 4799999987532 221 22333344444332 012246678999999999999999
Q ss_pred HhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 734 l~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
++.+|++++|||||++||+.+.+.+.+.+..... +|+|+|++||+++.+.. +|+|++|++|++++.|+++++.+.
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999999998876665444 48999999999998765 899999999999999998887543
No 197
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-36 Score=342.84 Aligned_cols=204 Identities=25% Similarity=0.393 Sum_probs=172.9
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i 660 (1354)
.++++|++++|+.....++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48899999999753334699999999999999999999999999999999999999999999876 38
Q ss_pred EEEeCCCC--CCCCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000680 661 AYVSQTSW--IQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1354)
Q Consensus 661 ~yv~Q~~~--~~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1354)
+|++|+|. +++.|+.|||.++.. ... ++++++++.+++....+ .++.+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKT-----------REPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHHHHHH
Confidence 99999983 667899999987521 222 23455566666643322 45678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhc
Q 000680 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
||++.+|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999988766544443 8999999999999888999999999999999999998754
No 198
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=5.1e-36 Score=336.82 Aligned_cols=200 Identities=26% Similarity=0.417 Sum_probs=168.2
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------e
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------------~ 659 (1354)
++++|++++|+. +++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 678999999963 4699999999999999999999999999999999999999999998876 3
Q ss_pred EEEEeCCCCCC-CCcHHHHHhcCC----CCCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 660 IAYVSQTSWIQ-SGSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 660 i~yv~Q~~~~~-~~ti~eni~~g~----~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
++|++|++.++ ..|++||+.++. ..+. ++..++++..++.+. ...++.+||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAER-----------AHHYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHH-----------HhcChhhcCHHHHHHHHH
Confidence 89999998765 579999998753 1222 223344444444332 235667899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
|||++.+|++++|||||++||+++.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999887655444468999999999999876 899999999999999999987653
No 199
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-36 Score=342.17 Aligned_cols=204 Identities=25% Similarity=0.412 Sum_probs=172.4
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------e
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~ 659 (1354)
..++++|++++|+.+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 6 ~~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 6 VMIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred eEEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 368999999999632 35699999999999999999999999999999999999999999998876 3
Q ss_pred EEEEeCCC--CCCCCcHHHHHhcCCC---CCHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 660 IAYVSQTS--WIQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 660 i~yv~Q~~--~~~~~ti~eni~~g~~---~~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
++|++|+| .+++.|++||+.++.. ++.+ +..++++..++.+.++ .++.+||||||||++|
T Consensus 85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~l 153 (271)
T PRK13632 85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLD-----------KEPQNLSGGQKQRVAI 153 (271)
T ss_pred eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CCcccCCHHHHHHHHH
Confidence 89999998 4567899999987531 2322 2344555566654433 5567999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhc
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
|||++.+|+++||||||++||+.+.+.+++.+.....+ ++|+|++||+++.+..||++++|++|++.+.|+.+++.+.
T Consensus 154 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 154 ASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999998766655444 5899999999998877999999999999999998887643
No 200
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-36 Score=344.64 Aligned_cols=204 Identities=21% Similarity=0.349 Sum_probs=169.0
Q ss_pred EEEEeeEEEeCCCC--CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000680 595 VKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~--~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------- 658 (1354)
++++|++++|+... ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997432 14699999999999999999999999999999999999999999998876
Q ss_pred ---eEEEEeCCC--CCCCCcHHHHHhcCCC---CCHHH----HHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHH
Q 000680 659 ---SIAYVSQTS--WIQSGSIRDNILYGKP---MDKAR----YDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1354)
Q Consensus 659 ---~i~yv~Q~~--~~~~~ti~eni~~g~~---~~~~~----~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkq 726 (1354)
.|+|++|+| .+++.|++||+.++.. .+.+. .+++++..++..+ ....++.+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISES----------LFEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHHHH
Confidence 289999997 5677899999987531 22222 2333444444321 123567899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHH
Q 000680 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 727 Rv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1354)
|++||||++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999887665544458999999999999875 899999999999999999887
Q ss_pred Hhc
Q 000680 806 LLA 808 (1354)
Q Consensus 806 ~~~ 808 (1354)
.+.
T Consensus 233 ~~~ 235 (280)
T PRK13649 233 FQD 235 (280)
T ss_pred hcC
Confidence 653
No 201
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=2.7e-36 Score=354.73 Aligned_cols=189 Identities=33% Similarity=0.469 Sum_probs=162.2
Q ss_pred CCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------------eEEEEeCCCC
Q 000680 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------------SIAYVSQTSW 668 (1354)
Q Consensus 610 ~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------------------~i~yv~Q~~~ 668 (1354)
..+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| +++|++|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 4579999999999999999999999999999999999999999999876 3999999998
Q ss_pred CCC-CcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000680 669 IQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1354)
Q Consensus 669 ~~~-~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1354)
+++ .|++||+.++.. .++ ++..++++..+|.+.. ...+.+|||||||||+||||++++|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~-----------~~~~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWA-----------DKKPGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 875 799999998642 222 2344555555554332 245678999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhcC
Q 000680 741 YLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 741 llLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
+|||||||+||+.+.+.+.+.+..... .++|+|++|||++++.+ +|+|++|++|++++.|+++++..++
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p 256 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNP 256 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCc
Confidence 999999999999999999887766544 38999999999999755 8999999999999999999997653
No 202
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=5.2e-36 Score=349.33 Aligned_cols=208 Identities=24% Similarity=0.364 Sum_probs=172.4
Q ss_pred CCcEEEEeeEEEeCCCC----------CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---
Q 000680 592 DRSVKIQEGNFSWDPEL----------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--- 658 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~----------~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--- 658 (1354)
+.-++++|++++|+... ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 34689999999996421 24689999999999999999999999999999999999999999998876
Q ss_pred -------------eEEEEeCCCC--C-CCCcHHHHHhcCC-----CCCHH----HHHHHHHHhccHHHHhcCCCCCcccc
Q 000680 659 -------------SIAYVSQTSW--I-QSGSIRDNILYGK-----PMDKA----RYDKAIKACALDKDINNFDHGDLTEI 713 (1354)
Q Consensus 659 -------------~i~yv~Q~~~--~-~~~ti~eni~~g~-----~~~~~----~~~~~~~~~~l~~~l~~l~~gd~t~i 713 (1354)
+++||+|+|. + +..||.|||.++. ..+++ +..+.++..++.++ ..
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~----------~~ 155 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPN----------LI 155 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChH----------Hh
Confidence 4999999983 4 4689999997531 13322 23344555555322 12
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEE
Q 000680 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVL 791 (1354)
Q Consensus 714 g~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l 791 (1354)
...+.+|||||||||+||||++.+|+++|+||||++||+.+.+.+.+.+..... .|.|+|+||||++.+.. ||+|++|
T Consensus 156 ~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl 235 (331)
T PRK15079 156 NRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVM 235 (331)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 466789999999999999999999999999999999999999999876655443 48899999999999986 8999999
Q ss_pred eCCeEEEecChHHHHhcC
Q 000680 792 EGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 792 ~~G~i~~~g~~~~l~~~~ 809 (1354)
++|+|++.|+.+++.++.
T Consensus 236 ~~G~ive~g~~~~i~~~~ 253 (331)
T PRK15079 236 YLGHAVELGTYDEVYHNP 253 (331)
T ss_pred ECCEEEEEcCHHHHHcCC
Confidence 999999999999998654
No 203
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-36 Score=345.20 Aligned_cols=206 Identities=23% Similarity=0.375 Sum_probs=168.1
Q ss_pred CcEEEEeeEEEeCCCC--CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------
Q 000680 593 RSVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~--~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------ 658 (1354)
+.++++|++++|+... ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 4689999999997432 13599999999999999999999999999999999999999999998765
Q ss_pred ------eEEEEeCCCC--CCCCcHHHHHhcCCC---CCHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChH
Q 000680 659 ------SIAYVSQTSW--IQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1354)
Q Consensus 659 ------~i~yv~Q~~~--~~~~ti~eni~~g~~---~~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgG 723 (1354)
.++|++|+|. +++.|++||+.++.. ...+ +..+.++..++..+ ..++.+.+||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~----------~~~~~~~~LS~G 154 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPED----------YVKRSPFELSGG 154 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------HhcCChhhCCHH
Confidence 3899999984 466799999988632 2221 12223333333111 123567899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecC
Q 000680 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1354)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1354)
||||++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999998876654433 48999999999998765 89999999999999999
Q ss_pred hHHHHhc
Q 000680 802 YQELLLA 808 (1354)
Q Consensus 802 ~~~l~~~ 808 (1354)
++++.+.
T Consensus 235 ~~~~~~~ 241 (289)
T PRK13645 235 PFEIFSN 241 (289)
T ss_pred HHHHhcC
Confidence 9887653
No 204
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=5.7e-36 Score=339.72 Aligned_cols=204 Identities=26% Similarity=0.408 Sum_probs=170.4
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------- 658 (1354)
++.++++|+++.|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (257)
T PRK10619 3 ENKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79 (257)
T ss_pred CccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccc
Confidence 356899999999963 4699999999999999999999999999999999999999999998765
Q ss_pred -------------eEEEEeCCCCCCC-CcHHHHHhcCC----CCCH----HHHHHHHHHhccHHHHhcCCCCCcccccCC
Q 000680 659 -------------SIAYVSQTSWIQS-GSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1354)
Q Consensus 659 -------------~i~yv~Q~~~~~~-~ti~eni~~g~----~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~ 716 (1354)
.++|+||++.++. .|++||+.++. ..+. ++..+.++..++...+ .++.
T Consensus 80 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~ 149 (257)
T PRK10619 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKY 149 (257)
T ss_pred ccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCC
Confidence 3899999998765 69999998642 1121 2233344444443221 1356
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCe
Q 000680 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1354)
Q Consensus 717 g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1354)
+.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.....+|+|+|+|||+++.+.. ||+|++|++|+
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~ 229 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 229 (257)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 78999999999999999999999999999999999999999987665544468999999999999986 89999999999
Q ss_pred EEEecChHHHHhc
Q 000680 796 ITQSGNYQELLLA 808 (1354)
Q Consensus 796 i~~~g~~~~l~~~ 808 (1354)
+++.|+++++.+.
T Consensus 230 i~~~~~~~~~~~~ 242 (257)
T PRK10619 230 IEEEGAPEQLFGN 242 (257)
T ss_pred EEEeCCHHHhhhC
Confidence 9999999987643
No 205
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-36 Score=339.37 Aligned_cols=207 Identities=28% Similarity=0.410 Sum_probs=172.7
Q ss_pred CCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC-------
Q 000680 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG------- 658 (1354)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~-----~~~G~i~~~g------- 658 (1354)
..+.++++|+++.|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|
T Consensus 10 ~~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~ 86 (260)
T PRK10744 10 APSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK 86 (260)
T ss_pred CCceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc
Confidence 3456899999999963 369999999999999999999999999999999999986 5899998865
Q ss_pred --------eEEEEeCCCCCCCCcHHHHHhcCCC----CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCCh
Q 000680 659 --------SIAYVSQTSWIQSGSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1354)
Q Consensus 659 --------~i~yv~Q~~~~~~~ti~eni~~g~~----~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSg 722 (1354)
+++|++|++.+++.|++||+.++.. .+. ++.+++++..++..++. ...++++.+|||
T Consensus 87 ~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~ 159 (260)
T PRK10744 87 QDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSG 159 (260)
T ss_pred cchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCH
Confidence 3899999998878999999987532 222 23445555555533222 223567889999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecC
Q 000680 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1354)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1354)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. +|++++|++|++++.|+
T Consensus 160 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 238 (260)
T PRK10744 160 GQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL-KQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGN 238 (260)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999987765544 457899999999999865 89999999999999999
Q ss_pred hHHHHhc
Q 000680 802 YQELLLA 808 (1354)
Q Consensus 802 ~~~l~~~ 808 (1354)
.+++...
T Consensus 239 ~~~~~~~ 245 (260)
T PRK10744 239 TDTIFTK 245 (260)
T ss_pred HHHHHhC
Confidence 9988654
No 206
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.6e-36 Score=330.26 Aligned_cols=192 Identities=28% Similarity=0.443 Sum_probs=161.5
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------eEEEEeC
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------SIAYVSQ 665 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------~i~yv~Q 665 (1354)
++++|+++.|+. +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q 77 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPE 77 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEecc
Confidence 468999999963 4699999999999999999999999999999999999999999999987 4999999
Q ss_pred CCCCCC-CcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcC
Q 000680 666 TSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1354)
Q Consensus 666 ~~~~~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~ 737 (1354)
++.++. .|++||+.+... .. +++..+.++..++...+ .++..+||||||||++||||++.+
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 78 ERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYA-----------NKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred CCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHH-----------hCcHhhCCHHHHHHHHHHHHHhcC
Confidence 987765 699999986421 11 22334445555554332 356678999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 738 ~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999887665544568899999999999876 8999999999998754
No 207
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=5.8e-36 Score=341.55 Aligned_cols=202 Identities=23% Similarity=0.315 Sum_probs=169.1
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------- 658 (1354)
..++++|+++.|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (269)
T PRK11831 6 NLVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV 82 (269)
T ss_pred ceEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHH
Confidence 35899999999963 4689999999999999999999999999999999999999999998875
Q ss_pred --eEEEEeCCCCCCC-CcHHHHHhcCC----CCCHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 000680 659 --SIAYVSQTSWIQS-GSIRDNILYGK----PMDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1354)
Q Consensus 659 --~i~yv~Q~~~~~~-~ti~eni~~g~----~~~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1354)
.++|++|++.+++ .|++||+.++. ..+.+ +..+.++..++.+.. ..+..+||||||||
T Consensus 83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qr 151 (269)
T PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAA-----------KLMPSELSGGMARR 151 (269)
T ss_pred hhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHH
Confidence 3899999998765 59999998642 12221 233344444443222 24567899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHH
Q 000680 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 728 v~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1354)
++||||++.+|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 152 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 152 AALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999998876655443 37899999999999876 899999999999999999998
Q ss_pred Hhc
Q 000680 806 LLA 808 (1354)
Q Consensus 806 ~~~ 808 (1354)
.+.
T Consensus 232 ~~~ 234 (269)
T PRK11831 232 QAN 234 (269)
T ss_pred hcC
Confidence 754
No 208
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=5.1e-36 Score=332.66 Aligned_cols=192 Identities=27% Similarity=0.413 Sum_probs=159.8
Q ss_pred EEEEeeEEEeCCCC-CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000680 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------- 658 (1354)
++++|++++|+... ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 67899999996422 24699999999999999999999999999999999999999999998865
Q ss_pred --eEEEEeCCCCCC-CCcHHHHHhcCC---CCCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 000680 659 --SIAYVSQTSWIQ-SGSIRDNILYGK---PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1354)
Q Consensus 659 --~i~yv~Q~~~~~-~~ti~eni~~g~---~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1354)
.++|++|++.++ +.|++||+.++. .++. ++..+.++.+++.+.+ ...+.+||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRI-----------NHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHHH
Confidence 389999998776 569999998742 1222 2334445555554322 355678999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhhcCEEEEEeCCeEE
Q 000680 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQIT 797 (1354)
Q Consensus 729 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~ 797 (1354)
+||||++.+|+++||||||++||+++.+.+.+.+..... .++|+|++||+++++..+|++++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 999999999999999999999999999998876654443 478999999999998889999999999985
No 209
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-35 Score=341.30 Aligned_cols=204 Identities=24% Similarity=0.376 Sum_probs=173.9
Q ss_pred cEEEEeeEEEeCCCC---CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------
Q 000680 594 SVKIQEGNFSWDPEL---AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~---~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------ 658 (1354)
-++++|++++|+... .+++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 488999999997431 24699999999999999999999999999999999999999999999876
Q ss_pred --eEEEEeCCCC--CCCCcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 000680 659 --SIAYVSQTSW--IQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1354)
Q Consensus 659 --~i~yv~Q~~~--~~~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1354)
.++|++|+|. ++..|+.||+.|+.. .+ +++.+++++.++|.+.++ ....+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRR-----------HAPHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHH
Confidence 3899999984 556799999998632 22 234556666777765443 4567899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHH
Q 000680 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806 (1354)
Q Consensus 728 v~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 806 (1354)
++||||++.+|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999998876554433 489999999999998789999999999999999999986
Q ss_pred hc
Q 000680 807 LA 808 (1354)
Q Consensus 807 ~~ 808 (1354)
..
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 54
No 210
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-35 Score=333.01 Aligned_cols=201 Identities=22% Similarity=0.356 Sum_probs=166.5
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~ 659 (1354)
.++++|+++.|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4889999999963 4699999999999999999999999999999999999999999998876 3
Q ss_pred EEEEeCCCCCCC-CcHHHHHhcCCCC-CHHHH----HHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 000680 660 IAYVSQTSWIQS-GSIRDNILYGKPM-DKARY----DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1354)
Q Consensus 660 i~yv~Q~~~~~~-~ti~eni~~g~~~-~~~~~----~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARa 733 (1354)
++|++|++.++. .|++||+.++... +.+.. .++++... .+.. ....++.+||||||||++||||
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~---~l~~-------~~~~~~~~LS~G~~qrl~la~a 151 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFP---RLHE-------RRIQRAGTMSGGEQQMLAIGRA 151 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHH---HHHH-------HHhCchhhCCHHHHHHHHHHHH
Confidence 899999987765 6999999876421 21222 22222221 1111 1124677899999999999999
Q ss_pred HhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 734 l~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 152 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred HHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 999999999999999999999999887665544568999999999998765 89999999999999999999864
No 211
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-35 Score=337.51 Aligned_cols=200 Identities=21% Similarity=0.339 Sum_probs=167.7
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~ 659 (1354)
.++++|+++.|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 5899999999963 4699999999999999999999999999999999999999999999876 2
Q ss_pred EEEEeCCCCCCC-CcHHHHHhcCCC-----------C-----C------HHHHHHHHHHhccHHHHhcCCCCCcccccCC
Q 000680 660 IAYVSQTSWIQS-GSIRDNILYGKP-----------M-----D------KARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1354)
Q Consensus 660 i~yv~Q~~~~~~-~ti~eni~~g~~-----------~-----~------~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~ 716 (1354)
++|++|++.++. .|++||+.++.. + . .++..+.++..++.+ ..+.+
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~ 150 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLE-----------HANRQ 150 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhh-----------hhhCC
Confidence 789999998765 599999997521 0 0 012222233333322 23467
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhhh-cCEEEEEeCC
Q 000680 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGG 794 (1354)
Q Consensus 717 g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G 794 (1354)
+.+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++.+.. ||++++|++|
T Consensus 151 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQG 230 (255)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 7899999999999999999999999999999999999999988766655444 7899999999999876 8999999999
Q ss_pred eEEEecChHHHHh
Q 000680 795 QITQSGNYQELLL 807 (1354)
Q Consensus 795 ~i~~~g~~~~l~~ 807 (1354)
++++.|+.+++..
T Consensus 231 ~i~~~~~~~~~~~ 243 (255)
T PRK11300 231 TPLANGTPEEIRN 243 (255)
T ss_pred eEEecCCHHHHhh
Confidence 9999999988754
No 212
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-36 Score=354.76 Aligned_cols=188 Identities=27% Similarity=0.407 Sum_probs=160.7
Q ss_pred CcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------eEEEEeCCCCCC-CC
Q 000680 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIAYVSQTSWIQ-SG 672 (1354)
Q Consensus 611 ~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------------~i~yv~Q~~~~~-~~ 672 (1354)
++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++| +++|++|++.++ +.
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 479999999999999999999999999999999999999999999875 389999999876 56
Q ss_pred cHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 000680 673 SIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1354)
Q Consensus 673 ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1354)
|++||+.++.. ++. ++..++++.++|.+.++ .++.+|||||||||+||||++.+|+++||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~-----------~~~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAH-----------SYPDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhh-----------cCcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999998632 222 23445556566544332 5567899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhcC
Q 000680 746 PFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 746 p~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
||++||+.+.+.+.+.+..... .++|+|++||+++++.. +|+|++|++|++++.|+++++....
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~ 256 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNP 256 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCc
Confidence 9999999999998877665443 58999999999999865 8999999999999999999987653
No 213
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-35 Score=339.57 Aligned_cols=203 Identities=22% Similarity=0.334 Sum_probs=170.3
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i 660 (1354)
.++++|++++|+.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 58999999999743 24689999999999999999999999999999999999999999999987 38
Q ss_pred EEEeCCCC--CCCCcHHHHHhcCCC---CCHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000680 661 AYVSQTSW--IQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1354)
Q Consensus 661 ~yv~Q~~~--~~~~ti~eni~~g~~---~~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1354)
+|++|+|. +++.|+++|+.++.. ...+ +..++++..++.+.. ..++.+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERA-----------DYEPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCCcccCCHHHHHHHHHH
Confidence 99999985 566799999988632 2222 233344444443222 256779999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhc
Q 000680 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
||++.+|+++||||||++||+.+.+.+++.+..... +|+|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999998876655433 37899999999999878999999999999999999988654
No 214
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-35 Score=337.07 Aligned_cols=199 Identities=26% Similarity=0.386 Sum_probs=169.3
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~ 661 (1354)
++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 689999999963 4699999999999999999999999999999999999999999999876 389
Q ss_pred EEeCCCCCCC-CcHHHHHhcCCC-----C---C---HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 000680 662 YVSQTSWIQS-GSIRDNILYGKP-----M---D---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1354)
Q Consensus 662 yv~Q~~~~~~-~ti~eni~~g~~-----~---~---~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1354)
|++|++.++. .|+.||+.++.. + . .++..++++.+++.+.. ..++..||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLA-----------DRRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHH-----------cCCcccCCHHHHHHHH
Confidence 9999987665 499999988631 1 1 22344555555554433 2567789999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 730 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. +|++++|++|++++.|+++++..
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999999999999887665544468999999999999876 89999999999999999988764
No 215
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=6.8e-36 Score=338.00 Aligned_cols=201 Identities=27% Similarity=0.432 Sum_probs=167.5
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------- 658 (1354)
.++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 3789999999963 3699999999999999999999999999999999999999999997754
Q ss_pred ------eEEEEeCCCCCC-CCcHHHHHhcCC----CCCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChH
Q 000680 659 ------SIAYVSQTSWIQ-SGSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1354)
Q Consensus 659 ------~i~yv~Q~~~~~-~~ti~eni~~g~----~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgG 723 (1354)
.++|++|++.++ +.|++||+.++. ..+. ++..+.++..++... ...++.+||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G 148 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK-----------ETSYPRRLSGG 148 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcch-----------hhCChhhCChH
Confidence 389999998776 479999997642 1222 123333443333221 23567899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecCh
Q 000680 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1354)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1354)
||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+.
T Consensus 149 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 228 (250)
T PRK11264 149 QQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPA 228 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999887655544468999999999999876 899999999999999999
Q ss_pred HHHHhc
Q 000680 803 QELLLA 808 (1354)
Q Consensus 803 ~~l~~~ 808 (1354)
+++.+.
T Consensus 229 ~~~~~~ 234 (250)
T PRK11264 229 KALFAD 234 (250)
T ss_pred HHHhcC
Confidence 988653
No 216
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-35 Score=339.95 Aligned_cols=200 Identities=27% Similarity=0.371 Sum_probs=167.9
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------e
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------------~ 659 (1354)
++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 678999999963 4699999999999999999999999999999999999999999998865 3
Q ss_pred EEEEeCCCC--CCCCcHHHHHhcCC---CCCHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 660 IAYVSQTSW--IQSGSIRDNILYGK---PMDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 660 i~yv~Q~~~--~~~~ti~eni~~g~---~~~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
++|++|++. ++..|+.||+.++. ..+.+ +..++++..++.... ..++.+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-----------HQPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh-----------cCCchhCCHHHHHHHHH
Confidence 899999985 46678999998742 12222 233455555554322 24567899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
|||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999887665544468999999999999865 899999999999999999887653
No 217
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.7e-36 Score=328.71 Aligned_cols=190 Identities=26% Similarity=0.398 Sum_probs=160.7
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~i~y 662 (1354)
++++|+++.|+. .++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEE
Confidence 468999999964 36999999999999 9999999999999999999999999999999877 3899
Q ss_pred EeCCCCCCC-CcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 000680 663 VSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1354)
Q Consensus 663 v~Q~~~~~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1354)
++|++.++. .|++||+.+... .+ +++.++.++.+++.+..+ ..+.+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-----------KKIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-----------CchhhCCHHHHHHHHHHHHH
Confidence 999998765 599999986321 11 234455666666654332 45678999999999999999
Q ss_pred hcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
+++|+++||||||++||+.+.+++.+.+.... +++|+|++||+++.+.. +|++++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELG-EDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999887665443 46899999999999875 8999999999998764
No 218
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.5e-36 Score=313.66 Aligned_cols=209 Identities=29% Similarity=0.436 Sum_probs=172.5
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~ 659 (1354)
-++++|++-.|.. .++|+++||++++||+++++|+||+||||||++|.|..++.+|+|.++| .
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 4678999999975 4699999999999999999999999999999999999999999999988 3
Q ss_pred EEEEeCCCCCC-CCcHHHHHhcCCCCCHH-HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcC
Q 000680 660 IAYVSQTSWIQ-SGSIRDNILYGKPMDKA-RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1354)
Q Consensus 660 i~yv~Q~~~~~-~~ti~eni~~g~~~~~~-~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~ 737 (1354)
|+||||...+| +.||+||+..|....+. +..+. .+++-.+.+|.= ......++.+|||||||.+++||||+++
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~----~~e~v~~lFP~L-ker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQER----DLEEVYELFPRL-KERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhcccccccccc----cHHHHHHHChhH-HHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 99999998876 67999999987432221 11110 022223333321 1123478999999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhh-hcCEEEEEeCCeEEEecChHHHHhcCc
Q 000680 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLAGT 810 (1354)
Q Consensus 738 ~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1354)
|++++||||+.+|-|...+.||+.+.....+ |-||++|.++..+.- -+||.+||++|+|+.+|+.+|+.+++.
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~ 229 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPD 229 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHH
Confidence 9999999999999999999999877665544 679999999999865 589999999999999999999987643
No 219
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=8.9e-36 Score=332.74 Aligned_cols=198 Identities=29% Similarity=0.473 Sum_probs=165.7
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------eE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~i 660 (1354)
++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 468999999973 4699999999999999999999999999999999999999999999876 38
Q ss_pred EEEeCCCCCCC-CcHHHHHhcCCCC---C-HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh
Q 000680 661 AYVSQTSWIQS-GSIRDNILYGKPM---D-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 661 ~yv~Q~~~~~~-~ti~eni~~g~~~---~-~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1354)
+|++|++.++. .|++||+.++... . .+.+.++++..+. +. ....++..+||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~---l~-------~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV---LK-------EMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHh---HH-------HHhhCChhhCCHHHHHHHHHHHHHh
Confidence 99999998765 5999999875321 1 2233444444331 11 1123567899999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHH
Q 000680 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1354)
++|+++||||||++||+.+.+++.+.+..... .++|+|++||+++++.. +|+++++++|++++.|+.+++
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999998876655444 37899999999999886 899999999999999998887
No 220
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-35 Score=335.25 Aligned_cols=199 Identities=29% Similarity=0.393 Sum_probs=169.3
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~ 661 (1354)
++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++| .++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999973 4699999999999999999999999999999999999999999999877 289
Q ss_pred EEeCCCCC-CCCcHHHHHhcCCC-C--C----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 000680 662 YVSQTSWI-QSGSIRDNILYGKP-M--D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1354)
Q Consensus 662 yv~Q~~~~-~~~ti~eni~~g~~-~--~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARa 733 (1354)
|++|++.+ ++.|++||+.++.. . . +++.++.++..++.... ...+.+||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLA-----------GRDYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHh-----------cCCcccCCHHHHHHHHHHHH
Confidence 99999876 67899999987532 1 1 22344555555554432 24667999999999999999
Q ss_pred Hh------cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHH
Q 000680 734 VY------NDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 734 l~------~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1354)
++ .+|+++||||||++||+.+.+.+.+.+.... .+|+|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999887665544 468999999999999875 899999999999999999887
Q ss_pred Hh
Q 000680 806 LL 807 (1354)
Q Consensus 806 ~~ 807 (1354)
.+
T Consensus 229 ~~ 230 (258)
T PRK13548 229 LT 230 (258)
T ss_pred hC
Confidence 64
No 221
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-35 Score=338.05 Aligned_cols=206 Identities=23% Similarity=0.378 Sum_probs=171.8
Q ss_pred CCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC-------
Q 000680 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG------- 658 (1354)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-----~~G~i~~~g------- 658 (1354)
.+..++++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|
T Consensus 16 ~~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 16 TEIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred CCceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 4567999999999963 4699999999999999999999999999999999999975 899998876
Q ss_pred --------eEEEEeCCCCCCCCcHHHHHhcCCC---C--C----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCC
Q 000680 659 --------SIAYVSQTSWIQSGSIRDNILYGKP---M--D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1354)
Q Consensus 659 --------~i~yv~Q~~~~~~~ti~eni~~g~~---~--~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LS 721 (1354)
.++|++|+|.+++.|++||+.++.. . . .++..++++.+++.+++. +..++++.+||
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS 165 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLS 165 (267)
T ss_pred cchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCC
Confidence 3899999998887899999987531 1 1 123344555555543221 12346778999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
||||||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 166 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l-~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g 244 (267)
T PRK14235 166 GGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDEL-RQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVG 244 (267)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-hcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999987755443 347899999999999866 8999999999999999
Q ss_pred ChHHHHh
Q 000680 801 NYQELLL 807 (1354)
Q Consensus 801 ~~~~l~~ 807 (1354)
+.+++..
T Consensus 245 ~~~~~~~ 251 (267)
T PRK14235 245 DTEKMFT 251 (267)
T ss_pred CHHHHHh
Confidence 9998864
No 222
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1.3e-35 Score=338.08 Aligned_cols=207 Identities=24% Similarity=0.361 Sum_probs=169.2
Q ss_pred cEEEEeeEEEeCCC------CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------
Q 000680 594 SVKIQEGNFSWDPE------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~------~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------- 658 (1354)
.++++|++++|+.. .++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 37899999999642 135799999999999999999999999999999999999999999998876
Q ss_pred -------eEEEEeCCCC--C-CCCcHHHHHhcCC----CCCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCC
Q 000680 659 -------SIAYVSQTSW--I-QSGSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1354)
Q Consensus 659 -------~i~yv~Q~~~--~-~~~ti~eni~~g~----~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~L 720 (1354)
.++|++|+|. + ...|++||+.++. .++. ++..++++..++..+ ..+.++.+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~L 151 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSE----------DADKLPRQL 151 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChh----------hhhCChhhC
Confidence 3899999972 3 4579999996532 1222 233344444444211 123567899
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEE
Q 000680 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1354)
Q Consensus 721 SgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1354)
|||||||++||||++++|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999988876655443 38999999999999975 89999999999999
Q ss_pred ecChHHHHhcCc
Q 000680 799 SGNYQELLLAGT 810 (1354)
Q Consensus 799 ~g~~~~l~~~~~ 810 (1354)
.|+.+++.....
T Consensus 232 ~g~~~~~~~~~~ 243 (265)
T TIGR02769 232 ECDVAQLLSFKH 243 (265)
T ss_pred ECCHHHHcCCCC
Confidence 999999876433
No 223
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-35 Score=340.28 Aligned_cols=201 Identities=25% Similarity=0.446 Sum_probs=169.5
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------e
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------------~ 659 (1354)
++++|++++|+. ..++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 678999999963 23699999999999999999999999999999999999999999998876 2
Q ss_pred EEEEeCCC--CCCCCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 660 IAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 660 i~yv~Q~~--~~~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
|+|++|+| .+++.|++||+.++.. ... ++..++++.+++.... ..++.+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFE-----------NKPPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhh-----------cCChhhCCHHHHHHHHH
Confidence 89999997 4677899999987531 221 2344455555553221 24567899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
|||++.+|++++|||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999887665544458999999999999875 899999999999999999998653
No 224
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-35 Score=333.27 Aligned_cols=200 Identities=21% Similarity=0.377 Sum_probs=167.1
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~ 659 (1354)
.++++|+++.|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3788999999963 4699999999999999999999999999999999999999999999876 3
Q ss_pred EEEEeCCCCCCC-CcHHHHHhcCCCC----CH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 660 IAYVSQTSWIQS-GSIRDNILYGKPM----DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 660 i~yv~Q~~~~~~-~ti~eni~~g~~~----~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
++|++|++.++. .|++||+.+.... +. ++..+.++..++.. ....+..+||||||||++|
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~l 148 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEH-----------LRDSMGQSLSGGERRRVEI 148 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHH-----------HhhcchhhCCHHHHHHHHH
Confidence 899999987665 6999999875321 21 12333333333322 2346678999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
|||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 149 ARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 999999999999999999999999998876554444468999999999988765 89999999999999999998864
No 225
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.2e-35 Score=334.23 Aligned_cols=199 Identities=22% Similarity=0.345 Sum_probs=166.6
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~ 659 (1354)
-++++|+++.|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 2 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 2 ILYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred eEEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 3789999999963 4699999999999999999999999999999999999999999999876 2
Q ss_pred EEEEeCCCCCCC-CcHHHHHhcCCCCC---------------HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChH
Q 000680 660 IAYVSQTSWIQS-GSIRDNILYGKPMD---------------KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1354)
Q Consensus 660 i~yv~Q~~~~~~-~ti~eni~~g~~~~---------------~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgG 723 (1354)
++|++|++.+++ .|++||+.++...+ +++..+.++..++.+ ....+..+||||
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G 147 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD-----------EADRLAGLLSHG 147 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHH
Confidence 899999998776 59999998753211 112233333333322 234667899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecCh
Q 000680 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1354)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1354)
||||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 148 e~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~ 226 (242)
T TIGR03411 148 QKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSL-AGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSL 226 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHH-hcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCH
Confidence 999999999999999999999999999999999988765543 347899999999999876 899999999999999999
Q ss_pred HHHHh
Q 000680 803 QELLL 807 (1354)
Q Consensus 803 ~~l~~ 807 (1354)
+++..
T Consensus 227 ~~~~~ 231 (242)
T TIGR03411 227 DQVQA 231 (242)
T ss_pred HHHhc
Confidence 98764
No 226
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=7.4e-36 Score=329.71 Aligned_cols=189 Identities=26% Similarity=0.409 Sum_probs=159.3
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------------- 658 (1354)
++++|+++.|+.. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4689999999642 4699999999999999999999999999999999999999999998876
Q ss_pred eEEEEeCCCCCCC-CcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 659 SIAYVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 659 ~i~yv~Q~~~~~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
.++|++|++.++. .|++||+.++.. .. +++..+.++.+++.+.++ ....+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHR-----------ALPAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CChhhcCHHHHHHHHH
Confidence 3899999997765 699999987531 12 123445556666654333 4556899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeE
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1354)
|||++.+|+++||||||++||+++.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999887665544568999999999999886 899999999974
No 227
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=7e-36 Score=329.14 Aligned_cols=187 Identities=31% Similarity=0.494 Sum_probs=157.1
Q ss_pred EEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEEE
Q 000680 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYV 663 (1354)
Q Consensus 597 ~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~yv 663 (1354)
++|+++.|+.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 2 ~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 2 LKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred ceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 67899999642 24699999999999999999999999999999999999999999999876 38999
Q ss_pred eCCCC--CCCCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 000680 664 SQTSW--IQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1354)
Q Consensus 664 ~Q~~~--~~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1354)
+|++. +++.|++||+.++.. .+. ++..+.++..++.+.+ .+++.+||||||||++||||+
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLR-----------DRSPFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCHHHHHHHHHHHHH
Confidence 99983 567899999987522 222 2334455555554333 256678999999999999999
Q ss_pred hcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCe
Q 000680 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1354)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1354)
+++|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999988766554458999999999999987 89999999985
No 228
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-35 Score=326.76 Aligned_cols=190 Identities=29% Similarity=0.441 Sum_probs=160.6
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i~yv 663 (1354)
|+++|++++|+.. . .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 75 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSML 75 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEE
Confidence 4689999999632 2 399999999999999999999999999999999999999999987 38999
Q ss_pred eCCCCCCC-CcHHHHHhcCCCC-------CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh
Q 000680 664 SQTSWIQS-GSIRDNILYGKPM-------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 664 ~Q~~~~~~-~ti~eni~~g~~~-------~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1354)
+|++.++. .|++||+.++... ++++..++++.+++.+..+ ....+||||||||++||||++
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEK-----------RLPGELSGGERQRVALARVLV 144 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHh-----------CCcccCCHHHHHHHHHHHHHh
Confidence 99998765 5999999875321 1234556666666654443 345689999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
.+|+++||||||++||+++.+.+.+.+..... +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 145 RDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999998876655433 48999999999999876 8999999999998754
No 229
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-36 Score=336.62 Aligned_cols=204 Identities=25% Similarity=0.432 Sum_probs=169.6
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCC---ccC--CCcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE---IPK--ISGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~---~~~--~~G~i~~~g---------- 658 (1354)
.++++|+++.|+. +++|+|+||++++||+++|+|+||||||||+++|+|+ .+| ++|+|.++|
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 5789999999964 4699999999999999999999999999999999996 454 589998865
Q ss_pred -----eEEEEeCCCCCCCCcHHHHHhcCCC---C-C----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -----~i~yv~Q~~~~~~~ti~eni~~g~~---~-~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|+||++.+++.|++||+.++.. . + +++.+++++.+++.++++ +..++++.+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHH
Confidence 3899999998887899999987531 1 1 123344555555543222 123467889999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
||++||||++.+|+++||||||++||+.+.+.+.+.+.+. .+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~ 231 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL-KKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKK 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999988766554 457899999999999865 89999999999999999999
Q ss_pred HHhc
Q 000680 805 LLLA 808 (1354)
Q Consensus 805 l~~~ 808 (1354)
+.++
T Consensus 232 ~~~~ 235 (250)
T PRK14245 232 IFTN 235 (250)
T ss_pred HhcC
Confidence 8754
No 230
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-35 Score=337.54 Aligned_cols=206 Identities=22% Similarity=0.362 Sum_probs=170.4
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC--------
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG-------- 658 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~-----~~~G~i~~~g-------- 658 (1354)
+..++++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|
T Consensus 11 ~~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 11 NIIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred CceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 346999999999964 469999999999999999999999999999999999987 6899998865
Q ss_pred -------eEEEEeCCCCCCCCcHHHHHhcCCCC---C---HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -------SIAYVSQTSWIQSGSIRDNILYGKPM---D---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -------~i~yv~Q~~~~~~~ti~eni~~g~~~---~---~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|++.++..|++||+.++... + +++..++++.+++...++ +....++.+||||||
T Consensus 88 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 160 (269)
T PRK14259 88 DPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYSLSGGQQ 160 (269)
T ss_pred CHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCcccCCHHHH
Confidence 38999999988778999999986432 1 123344455444432221 123467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeC-----------
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEG----------- 793 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~----------- 793 (1354)
||++||||++.+|+++||||||++||+.+.+++.+.+... .+++|+|++||+++.+.. ||++++|++
T Consensus 161 qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~ 239 (269)
T PRK14259 161 QRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHEL-KKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKV 239 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcCEEEEEecccccccccccc
Confidence 9999999999999999999999999999999988765443 457899999999998875 899999996
Q ss_pred CeEEEecChHHHHhc
Q 000680 794 GQITQSGNYQELLLA 808 (1354)
Q Consensus 794 G~i~~~g~~~~l~~~ 808 (1354)
|++++.|+.+++.+.
T Consensus 240 g~~~~~~~~~~~~~~ 254 (269)
T PRK14259 240 GYLVEFNETKKIFNS 254 (269)
T ss_pred ceEEEeCCHHHHHhC
Confidence 678999999998754
No 231
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-35 Score=338.92 Aligned_cols=202 Identities=27% Similarity=0.419 Sum_probs=171.4
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i 660 (1354)
.++++|++++|+.+ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 3 ~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 37889999999632 3589999999999999999999999999999999999999999999876 38
Q ss_pred EEEeCCCC--CCCCcHHHHHhcCC---CCCHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000680 661 AYVSQTSW--IQSGSIRDNILYGK---PMDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1354)
Q Consensus 661 ~yv~Q~~~--~~~~ti~eni~~g~---~~~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1354)
+|++|+|. +++.|++||+.++. ..+.+ ++++.++.+++.+.+. ..+..||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qrl~la 149 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRD-----------RVPHHLSGGEKKRVAIA 149 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhc-----------CCcccCCHHHHHHHHHH
Confidence 99999973 56789999998753 23332 3455566666654433 45678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
||++.+|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 999999999999999999999999998876655444 38999999999999865 899999999999999999998753
No 232
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-35 Score=337.46 Aligned_cols=202 Identities=25% Similarity=0.355 Sum_probs=170.9
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------- 658 (1354)
+..++++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 9 ~~~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 85 (265)
T PRK10575 9 DTTFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85 (265)
T ss_pred CceEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhh
Confidence 346899999999963 3699999999999999999999999999999999999999999999887
Q ss_pred eEEEEeCCCCC-CCCcHHHHHhcCCC--------C---CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHH
Q 000680 659 SIAYVSQTSWI-QSGSIRDNILYGKP--------M---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1354)
Q Consensus 659 ~i~yv~Q~~~~-~~~ti~eni~~g~~--------~---~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkq 726 (1354)
.++|++|++-+ +..|++||+.++.. . +.++..+.++.+++.+.++ .+..+|||||||
T Consensus 86 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~q 154 (265)
T PRK10575 86 KVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAH-----------RLVDSLSGGERQ 154 (265)
T ss_pred heEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-----------CCcccCCHHHHH
Confidence 38999999755 45699999987531 1 1234455666666654333 455689999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 727 Rv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
|++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~ 234 (265)
T PRK10575 155 RAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAE 234 (265)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHH
Confidence 99999999999999999999999999999998876655443 37999999999999865 89999999999999999988
Q ss_pred HHh
Q 000680 805 LLL 807 (1354)
Q Consensus 805 l~~ 807 (1354)
+..
T Consensus 235 ~~~ 237 (265)
T PRK10575 235 LMR 237 (265)
T ss_pred hcC
Confidence 754
No 233
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.5e-35 Score=330.50 Aligned_cols=196 Identities=28% Similarity=0.379 Sum_probs=164.2
Q ss_pred CcEEEEeeEEEeCCCCC-CCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000680 593 RSVKIQEGNFSWDPELA-IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~-~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------- 658 (1354)
..++++|++++|++... .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 35899999999975321 3589999999999999999999999999999999999999999998865
Q ss_pred ----eEEEEeCCCCCCC-CcHHHHHhcCC---CCC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHH
Q 000680 659 ----SIAYVSQTSWIQS-GSIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1354)
Q Consensus 659 ----~i~yv~Q~~~~~~-~ti~eni~~g~---~~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkq 726 (1354)
.++|++|++.++. .|++||+.++. ..+ +++..+.++.+++.+.++ .++.+|||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Ge~q 153 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLD-----------HLPAQLSGGEQQ 153 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CChhhCCHHHHH
Confidence 3899999987765 69999998642 111 234555666666654433 455689999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhhcCEEEEEeCCeEEEe
Q 000680 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1354)
Q Consensus 727 Rv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1354)
|++||||++++|+++||||||++||+...+.+.+.+..... .|+|+|++||+++++..+|++++|++|++++.
T Consensus 154 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 154 RVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 99999999999999999999999999999998876655444 37899999999999878999999999999753
No 234
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=7.2e-36 Score=329.78 Aligned_cols=188 Identities=23% Similarity=0.421 Sum_probs=159.2
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------------- 658 (1354)
++++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 678999999952 24699999999999999999999999999999999999999999998865
Q ss_pred eEEEEeCCCCCC-CCcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 659 SIAYVSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 659 ~i~yv~Q~~~~~-~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
.++|++|+|.++ ..|++||+.++.. .+ +++.++.++..++.+.++ ....+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKAD-----------AFPEQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHHHH
Confidence 389999999876 4799999987521 22 234455566666654333 4456899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCe
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1354)
|||++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999887766544468999999999999886 89999999985
No 235
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-35 Score=332.83 Aligned_cols=199 Identities=28% Similarity=0.394 Sum_probs=165.8
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------------- 658 (1354)
++++|+++.|+. +++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 3 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 788999999963 4699999999999999999999999999999999999999999998865
Q ss_pred ---eEEEEeCCCCCCC-CcHHHHHhcCC----CCCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHH
Q 000680 659 ---SIAYVSQTSWIQS-GSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1354)
Q Consensus 659 ---~i~yv~Q~~~~~~-~ti~eni~~g~----~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkq 726 (1354)
.++|++|++.++. .|++||+.++. .... ++..+.++..++... +...+.+|||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~q 148 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPY-----------ADRFPLHLSGGQQQ 148 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHH
Confidence 3899999997764 69999997421 1111 223334444444332 23566799999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHH
Q 000680 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 727 Rv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1354)
|++||||++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. +|++++|++|++++.|+++++
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999999999999887655444468999999999999876 899999999999999998886
Q ss_pred Hh
Q 000680 806 LL 807 (1354)
Q Consensus 806 ~~ 807 (1354)
.+
T Consensus 229 ~~ 230 (242)
T PRK11124 229 TQ 230 (242)
T ss_pred cC
Confidence 43
No 236
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-35 Score=337.17 Aligned_cols=203 Identities=22% Similarity=0.303 Sum_probs=171.9
Q ss_pred CCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------
Q 000680 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1354)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------ 658 (1354)
+...++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~~~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~ 80 (265)
T PRK10253 4 SVARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVA 80 (265)
T ss_pred cccEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHh
Confidence 3457999999999973 4699999999999999999999999999999999999999999999876
Q ss_pred -eEEEEeCCCCCC-CCcHHHHHhcCC-CC-------C---HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -SIAYVSQTSWIQ-SGSIRDNILYGK-PM-------D---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -~i~yv~Q~~~~~-~~ti~eni~~g~-~~-------~---~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|++.++ +.|++||+.++. +. . .++..++++..++.+.+ ..++.+||||||
T Consensus 81 ~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Gq~ 149 (265)
T PRK10253 81 RRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLA-----------DQSVDTLSGGQR 149 (265)
T ss_pred hheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHh-----------cCCcccCChHHH
Confidence 389999998765 579999998752 11 1 12344555555554432 256789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1354)
||++||||++.+|+++||||||++||+.+.+.+.+.+..... +++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 150 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 229 (265)
T PRK10253 150 QRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPK 229 (265)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999876655444 48899999999998866 8999999999999999998
Q ss_pred HHHh
Q 000680 804 ELLL 807 (1354)
Q Consensus 804 ~l~~ 807 (1354)
++..
T Consensus 230 ~~~~ 233 (265)
T PRK10253 230 EIVT 233 (265)
T ss_pred HHhh
Confidence 8764
No 237
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=1.5e-35 Score=317.26 Aligned_cols=166 Identities=34% Similarity=0.591 Sum_probs=151.2
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~i~y 662 (1354)
++++|++++|+.. ..++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .++|
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEE
Confidence 4689999999753 23699999999999999999999999999999999999999999999987 2899
Q ss_pred EeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEE
Q 000680 663 VSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742 (1354)
Q Consensus 663 v~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ill 742 (1354)
++|++++++.|++||+ +.+||||||||++||||++++|++++
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999998889999998 45799999999999999999999999
Q ss_pred EeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEec
Q 000680 743 FDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800 (1354)
Q Consensus 743 LDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g 800 (1354)
|||||++||+++.+.+++.+... .+++|+|++||++++++.+|++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEV-LKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999988766544 4689999999999999889999999999998754
No 238
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.1e-35 Score=330.33 Aligned_cols=198 Identities=24% Similarity=0.341 Sum_probs=164.7
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------e
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~ 659 (1354)
..++++|+++.|+. .++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .
T Consensus 6 ~~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (225)
T PRK10247 6 PLLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82 (225)
T ss_pred ceEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhc
Confidence 46899999999963 4699999999999999999999999999999999999999999999876 3
Q ss_pred EEEEeCCCCCCCCcHHHHHhcCCC-----CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 000680 660 IAYVSQTSWIQSGSIRDNILYGKP-----MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1354)
Q Consensus 660 i~yv~Q~~~~~~~ti~eni~~g~~-----~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1354)
++|++|++.+++.|++||+.++.. .++++..+.++..++.+ +....++.+||||||||++||||+
T Consensus 83 i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~laral 152 (225)
T PRK10247 83 VSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRNL 152 (225)
T ss_pred cEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHHH
Confidence 899999999888899999986421 12223344444444432 123467789999999999999999
Q ss_pred hcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhhcCEEEEEe-CCeEEEecChH
Q 000680 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLE-GGQITQSGNYQ 803 (1354)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~-~G~i~~~g~~~ 803 (1354)
+++|+++||||||++||+.+.+.+.+.+..... +|+|+|++||++++++.||++++|+ ++..+++|+|+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 153 QFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999988776554433 4889999999999998899999994 66667777764
No 239
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-35 Score=336.72 Aligned_cols=205 Identities=26% Similarity=0.379 Sum_probs=169.7
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC---------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-----~~G~i~~~g--------- 658 (1354)
..++++|+++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|
T Consensus 11 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 11 PQIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eeEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 36899999999963 4699999999999999999999999999999999999875 799998765
Q ss_pred ------eEEEEeCCCCCCCCcHHHHHhcCCC---CCHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 ------SIAYVSQTSWIQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 ------~i~yv~Q~~~~~~~ti~eni~~g~~---~~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|++.+++.|++||+.++.. .+.+ +..++++.+++..++. ....+++.+||||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 160 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS-------DRLKSPALSLSGGQQ 160 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCChhhCCHHHH
Confidence 3899999998888999999987531 2222 2333444444432211 123467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l-~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 239 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL-KKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQ 239 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH-hhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999987765544 457999999999999866 89999999999999999998
Q ss_pred HHhc
Q 000680 805 LLLA 808 (1354)
Q Consensus 805 l~~~ 808 (1354)
+.++
T Consensus 240 ~~~~ 243 (258)
T PRK14268 240 IFHN 243 (258)
T ss_pred HhcC
Confidence 8643
No 240
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=9e-36 Score=345.30 Aligned_cols=187 Identities=24% Similarity=0.382 Sum_probs=160.9
Q ss_pred CCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEEEeCCCCCC-CCcHHH
Q 000680 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAYVSQTSWIQ-SGSIRD 676 (1354)
Q Consensus 610 ~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~i~yv~Q~~~~~-~~ti~e 676 (1354)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .+||+||++.++ +.|++|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 85 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRE 85 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHH
Confidence 4689999999999999999999999999999999999999999999977 389999998775 469999
Q ss_pred HHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 000680 677 NILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749 (1354)
Q Consensus 677 ni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~ 749 (1354)
|+.+... .. .++.+++++.+++.+.. ..+..+||||||||++||||++++|++++|||||++
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEERAEELLELFELGEAA-----------DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-----------CCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9986421 11 23455566666665433 256678999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 750 VDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 750 lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
||+.+.+.+++.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 99999999988665555568999999999999876 89999999999999999999864
No 241
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.5e-35 Score=343.07 Aligned_cols=198 Identities=24% Similarity=0.391 Sum_probs=169.4
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~i~y 662 (1354)
++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .+||
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEE
Confidence 789999999963 4699999999999999999999999999999999999999999999977 3999
Q ss_pred EeCCCCCCC-CcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 000680 663 VSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1354)
Q Consensus 663 v~Q~~~~~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1354)
+||++.++. .|++||+.+... .+ .++.+++++..++.+.. .++..+||||||||++||||+
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQ-----------HKKIGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-----------cCchhhCCHHHHHHHHHHHHH
Confidence 999998764 599999975321 12 23344555555554332 356789999999999999999
Q ss_pred hcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
+++|++++|||||++||+.+.+++++.+... .+++|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~-~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNI-GKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999988766544 457999999999999876 89999999999999999999864
No 242
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=1.7e-35 Score=335.74 Aligned_cols=199 Identities=27% Similarity=0.405 Sum_probs=168.1
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~ 661 (1354)
++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 678999999963 4699999999999999999999999999999999999999999999877 389
Q ss_pred EEeCCCC-CCCCcHHHHHhcCCC-C------C----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 000680 662 YVSQTSW-IQSGSIRDNILYGKP-M------D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1354)
Q Consensus 662 yv~Q~~~-~~~~ti~eni~~g~~-~------~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1354)
|++|++. .+..|++||+.++.. . . .++..++++.+++.+.. ..++.+||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLA-----------DRDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCHHHHHHHH
Confidence 9999985 456899999987531 1 0 12334445555553322 3567789999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 730 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
||||++.+|+++||||||++||+...+.+.+.+.....+++|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999999887665544458899999999999965 89999999999999999988754
No 243
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.7e-35 Score=335.03 Aligned_cols=200 Identities=27% Similarity=0.420 Sum_probs=167.8
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------------- 658 (1354)
|+++|+++.|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 468999999963 4699999999999999999999999999999999999999999998765
Q ss_pred ----------eEEEEeCCCCCC-CCcHHHHHhcCC----CCCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCC
Q 000680 659 ----------SIAYVSQTSWIQ-SGSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1354)
Q Consensus 659 ----------~i~yv~Q~~~~~-~~ti~eni~~g~----~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~ 719 (1354)
.++|++|++.++ ..|++||+.++. ..+. ++..+.++..++.+. .++.+.+
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADK-----------ADHMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhH-----------hhcChhh
Confidence 389999998776 579999998752 1122 233444444444432 2356678
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEE
Q 000680 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1354)
Q Consensus 720 LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1354)
||||||||++||||++++|+++||||||++||+.+.+.+++.+..... .++|+|++||+++.+.. +|++++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999998876655444 38999999999999865 8999999999999
Q ss_pred EecChHHHHhc
Q 000680 798 QSGNYQELLLA 808 (1354)
Q Consensus 798 ~~g~~~~l~~~ 808 (1354)
+.|+++++.+.
T Consensus 227 ~~g~~~~~~~~ 237 (252)
T TIGR03005 227 EQGKPDEIFRQ 237 (252)
T ss_pred EeCCHHHHhcC
Confidence 99999988654
No 244
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-35 Score=336.25 Aligned_cols=208 Identities=24% Similarity=0.362 Sum_probs=173.8
Q ss_pred CCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC------
Q 000680 590 KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG------ 658 (1354)
Q Consensus 590 ~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~-----~~~G~i~~~g------ 658 (1354)
.....++++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 16 ~~~~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 92 (267)
T PRK14237 16 EEEIALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRK 92 (267)
T ss_pred CCCeEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccc
Confidence 34457999999999963 469999999999999999999999999999999999986 5899998765
Q ss_pred ---------eEEEEeCCCCCCCCcHHHHHhcCCC----CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCC
Q 000680 659 ---------SIAYVSQTSWIQSGSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1354)
Q Consensus 659 ---------~i~yv~Q~~~~~~~ti~eni~~g~~----~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LS 721 (1354)
.++|++|++.++..|++||+.++.. .++ ++..++++.+++.+++. +..++.+.+||
T Consensus 93 ~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS 165 (267)
T PRK14237 93 EINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLS 165 (267)
T ss_pred cCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCC
Confidence 3899999998888899999987532 121 23444555555543332 22457788999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
||||||++||||++++|++++|||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 166 ~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g 244 (267)
T PRK14237 166 GGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFEL-KKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYD 244 (267)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999988765544 457899999999999865 8999999999999999
Q ss_pred ChHHHHhc
Q 000680 801 NYQELLLA 808 (1354)
Q Consensus 801 ~~~~l~~~ 808 (1354)
+++++...
T Consensus 245 ~~~~~~~~ 252 (267)
T PRK14237 245 KTRNIFTN 252 (267)
T ss_pred CHHHHhcC
Confidence 99998653
No 245
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-35 Score=335.22 Aligned_cols=205 Identities=27% Similarity=0.418 Sum_probs=168.9
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc--C---CCcEEEEcC---------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--K---ISGTVNLYG--------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~--~---~~G~i~~~g--------- 658 (1354)
..++++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|
T Consensus 11 ~~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~ 87 (259)
T PRK14274 11 EVYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87 (259)
T ss_pred ceEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccC
Confidence 35899999999963 369999999999999999999999999999999999987 3 589998765
Q ss_pred ------eEEEEeCCCCCCCCcHHHHHhcCCCC----CHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHH
Q 000680 659 ------SIAYVSQTSWIQSGSIRDNILYGKPM----DKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1354)
Q Consensus 659 ------~i~yv~Q~~~~~~~ti~eni~~g~~~----~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQ 724 (1354)
.++|++|++.+++.|++||+.++... +++ +..++++..++.+.+. +..+.++.+|||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq 160 (259)
T PRK14274 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQ 160 (259)
T ss_pred HHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHH
Confidence 38999999988888999999875321 211 2233344444433221 12346778999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChH
Q 000680 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1354)
Q Consensus 725 kqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1354)
|||++||||++.+|+++||||||++||+++.+.+.+.+.. ..+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 161 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~-~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 239 (259)
T PRK14274 161 QQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILK-LKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTN 239 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH-HhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999988765544 3457899999999999875 8999999999999999999
Q ss_pred HHHhc
Q 000680 804 ELLLA 808 (1354)
Q Consensus 804 ~l~~~ 808 (1354)
++.++
T Consensus 240 ~~~~~ 244 (259)
T PRK14274 240 KMFSN 244 (259)
T ss_pred HHhhC
Confidence 98654
No 246
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-35 Score=334.24 Aligned_cols=204 Identities=28% Similarity=0.380 Sum_probs=171.1
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-----~~G~i~~~g---------- 658 (1354)
-++++|+++.|+. +++|+|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 4789999999963 4699999999999999999999999999999999999875 799998865
Q ss_pred -----eEEEEeCCCCCCCCcHHHHHhcCCCC----CH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -----SIAYVSQTSWIQSGSIRDNILYGKPM----DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -----~i~yv~Q~~~~~~~ti~eni~~g~~~----~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|++.+++.|++||+.|+... +. ++..++++.+++.+++.. ..+.++.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHHH
Confidence 38999999998889999999875321 11 234456666665433321 23467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
||++||||++.+|+++||||||++||+.+.+++.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~-~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 232 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVEL-KKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEK 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHH
Confidence 9999999999999999999999999999999987755443 346899999999999876 89999999999999999999
Q ss_pred HHhc
Q 000680 805 LLLA 808 (1354)
Q Consensus 805 l~~~ 808 (1354)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14270 233 IFLE 236 (251)
T ss_pred HhcC
Confidence 8654
No 247
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-35 Score=333.59 Aligned_cols=204 Identities=28% Similarity=0.395 Sum_probs=169.1
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCC-----CcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-----SGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~-----~G~i~~~g---------- 658 (1354)
.++++|+++.|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5889999999963 46999999999999999999999999999999999999987 69998754
Q ss_pred -----eEEEEeCCCCCCCCcHHHHHhcCCCC----CH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -----SIAYVSQTSWIQSGSIRDNILYGKPM----DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -----~i~yv~Q~~~~~~~ti~eni~~g~~~----~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|++.+++.|++||+.++... .+ ++..++++..++.+.++ +..+.++.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHHHH
Confidence 39999999998888999999886321 11 12233333344432221 123577889999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL-KQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGE 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 9999999999999999999999999999999987755443 467999999999999877 79999999999999999998
Q ss_pred HHhc
Q 000680 805 LLLA 808 (1354)
Q Consensus 805 l~~~ 808 (1354)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14249 233 IFSR 236 (251)
T ss_pred HHhC
Confidence 8654
No 248
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-35 Score=326.77 Aligned_cols=198 Identities=27% Similarity=0.462 Sum_probs=168.3
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i~yv 663 (1354)
++++|++++|+. .+ .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 2 l~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 76 (232)
T PRK10771 2 LKLTDITWLYHH---LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSML 76 (232)
T ss_pred eEEEEEEEEECC---cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEE
Confidence 678999999963 22 399999999999999999999999999999999999999999887 38999
Q ss_pred eCCCCCCC-CcHHHHHhcCCC----CC---HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh
Q 000680 664 SQTSWIQS-GSIRDNILYGKP----MD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 664 ~Q~~~~~~-~ti~eni~~g~~----~~---~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1354)
+|++.++. .|++||+.++.. .. +++..++++..++.+.++ ....+||||||||++||||++
T Consensus 77 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~ 145 (232)
T PRK10771 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLA-----------RLPGQLSGGQRQRVALARCLV 145 (232)
T ss_pred ecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHh-----------CCcccCCHHHHHHHHHHHHHh
Confidence 99997765 599999987531 11 234555666666655443 455689999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
++|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+.. +|++++|++|++++.|+++++...
T Consensus 146 ~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 146 REQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999998876655443 48899999999999876 899999999999999999998754
No 249
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-35 Score=336.91 Aligned_cols=206 Identities=23% Similarity=0.333 Sum_probs=168.7
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC--------
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG-------- 658 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~-----~~~G~i~~~g-------- 658 (1354)
+..++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 19 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 95 (268)
T PRK14248 19 EHILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI 95 (268)
T ss_pred CceEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc
Confidence 346899999999963 469999999999999999999999999999999999864 6899998765
Q ss_pred -------eEEEEeCCCCCCCCcHHHHHhcCCCC----CH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChH
Q 000680 659 -------SIAYVSQTSWIQSGSIRDNILYGKPM----DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1354)
Q Consensus 659 -------~i~yv~Q~~~~~~~ti~eni~~g~~~----~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgG 723 (1354)
.++|++|++.+++.|++||+.++... .. ++..+.++.+++..++. ...+.++.+||||
T Consensus 96 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG 168 (268)
T PRK14248 96 NVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSGG 168 (268)
T ss_pred cHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCHH
Confidence 38999999998888999999875321 11 12233333333321111 2235678899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecCh
Q 000680 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1354)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1354)
||||++||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 169 q~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~ 247 (268)
T PRK14248 169 QQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITEL-KEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQT 247 (268)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHH-hcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999987755444 446899999999998865 899999999999999999
Q ss_pred HHHHhc
Q 000680 803 QELLLA 808 (1354)
Q Consensus 803 ~~l~~~ 808 (1354)
+++..+
T Consensus 248 ~~~~~~ 253 (268)
T PRK14248 248 EQIFTS 253 (268)
T ss_pred HHHHhC
Confidence 988654
No 250
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-35 Score=342.76 Aligned_cols=207 Identities=20% Similarity=0.302 Sum_probs=171.7
Q ss_pred CcEEEEeeEEEeCCCC-------CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------
Q 000680 593 RSVKIQEGNFSWDPEL-------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~-------~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------- 658 (1354)
..++++|++++|+... ..++++||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 3589999999996421 24689999999999999999999999999999999999999999998876
Q ss_pred ---------eEEEEeCCCC--C-CCCcHHHHHhcCC----CCCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCC
Q 000680 659 ---------SIAYVSQTSW--I-QSGSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718 (1354)
Q Consensus 659 ---------~i~yv~Q~~~--~-~~~ti~eni~~g~----~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~ 718 (1354)
+|+|++|+|. + +..|+.+|+..+. ...+ ++..+.++.++|.++. ....+.
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~p~ 153 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEH----------YDRYPH 153 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHH----------hcCCCc
Confidence 4999999983 3 4569999986421 1222 3345555666654221 135678
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeE
Q 000680 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1354)
Q Consensus 719 ~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1354)
+|||||||||+||||++.+|+++|+||||++||+.+.+++.+.+..... .|.|+|+||||++.+.. ||+|++|++|+|
T Consensus 154 ~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 154 MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRC 233 (327)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999887665444 48999999999999976 899999999999
Q ss_pred EEecChHHHHhcC
Q 000680 797 TQSGNYQELLLAG 809 (1354)
Q Consensus 797 ~~~g~~~~l~~~~ 809 (1354)
++.|+.+++.++.
T Consensus 234 ve~g~~~~~~~~p 246 (327)
T PRK11308 234 VEKGTKEQIFNNP 246 (327)
T ss_pred EEECCHHHHhcCC
Confidence 9999999998754
No 251
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=3.3e-35 Score=334.43 Aligned_cols=198 Identities=27% Similarity=0.435 Sum_probs=166.2
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEEcC------------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYG------------ 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~---~G~i~~~g------------ 658 (1354)
.++++|+++.|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4789999999963 46999999999999999999999999999999999999986 49998776
Q ss_pred ------eEEEEeCCCCCCC-CcHHHHHhcCCC------------CC---HHHHHHHHHHhccHHHHhcCCCCCcccccCC
Q 000680 659 ------SIAYVSQTSWIQS-GSIRDNILYGKP------------MD---KARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1354)
Q Consensus 659 ------~i~yv~Q~~~~~~-~ti~eni~~g~~------------~~---~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~ 716 (1354)
.++|++|++.++. .|++||+.++.. .. +++..++++..++.+.+ ..+
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFA-----------HQR 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHH-----------hCC
Confidence 2799999987655 699999987531 01 12334455555554322 356
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCC
Q 000680 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGG 794 (1354)
Q Consensus 717 g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G 794 (1354)
+.+||||||||++||||++.+|+++||||||++||+++.+.+.+.+..... +|+|+|++||+++.+.. ||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 778999999999999999999999999999999999999998876655443 48999999999998765 8999999999
Q ss_pred eEEEecChHHH
Q 000680 795 QITQSGNYQEL 805 (1354)
Q Consensus 795 ~i~~~g~~~~l 805 (1354)
++++.|+++++
T Consensus 230 ~i~~~g~~~~~ 240 (262)
T PRK09984 230 HVFYDGSSQQF 240 (262)
T ss_pred EEEEeCCHHHh
Confidence 99999999986
No 252
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-35 Score=333.47 Aligned_cols=204 Identities=29% Similarity=0.381 Sum_probs=168.4
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-----~~G~i~~~g---------- 658 (1354)
.++++|+++.|++ .++++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4789999999964 3699999999999999999999999999999999999974 799998876
Q ss_pred ---eEEEEeCCCCC-CCCcHHHHHhcCCCC-----CH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 ---SIAYVSQTSWI-QSGSIRDNILYGKPM-----DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 ---~i~yv~Q~~~~-~~~ti~eni~~g~~~-----~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|++.+ ++.|++||+.++... .. ++..+.++.+++.+.++ ......+.+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCcccCCHHHH
Confidence 38999999864 578999999875321 11 22334444444432111 123466789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
||++||||++++|++++|||||++||+.+.+++.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLEL-KKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTRE 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHH
Confidence 9999999999999999999999999999999988766554 457999999999999865 89999999999999999998
Q ss_pred HHhc
Q 000680 805 LLLA 808 (1354)
Q Consensus 805 l~~~ 808 (1354)
+.+.
T Consensus 232 ~~~~ 235 (250)
T PRK14247 232 VFTN 235 (250)
T ss_pred HHcC
Confidence 8654
No 253
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=2.3e-35 Score=327.69 Aligned_cols=196 Identities=21% Similarity=0.302 Sum_probs=168.3
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------eEEEEeC
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------SIAYVSQ 665 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------~i~yv~Q 665 (1354)
++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q 77 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIE 77 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcC
Confidence 468999999963 4699999999999999999999999999999999999999999999876 4899999
Q ss_pred CCCCC-CCcHHHHHhcCC---CCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEE
Q 000680 666 TSWIQ-SGSIRDNILYGK---PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741 (1354)
Q Consensus 666 ~~~~~-~~ti~eni~~g~---~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~il 741 (1354)
++.++ +.|++||+.++. ..++++..+.++..++.+..+ .++.+||||||||++||||++.+|+++
T Consensus 78 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rv~laral~~~p~ll 146 (223)
T TIGR03740 78 SPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGK-----------KKAKQFSLGMKQRLGIAIALLNHPKLL 146 (223)
T ss_pred CCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHh-----------hhHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 98765 479999997642 234556666777777654332 456789999999999999999999999
Q ss_pred EEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 742 LFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 742 lLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
||||||++||+.+.+.+.+.+.....+|+|+|++||+++++.. ||++++|++|++++.|+.++
T Consensus 147 llDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 147 ILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999887665544468899999999999865 89999999999999998654
No 254
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=3.2e-35 Score=327.94 Aligned_cols=196 Identities=26% Similarity=0.403 Sum_probs=158.4
Q ss_pred EEEEeeEEEeCCCC-CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000680 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------- 658 (1354)
++++|+++.|+... ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 67899999996421 12689999999999999999999999999999999999999999998865
Q ss_pred -eEEEEeCCCC--C-CCCcHHHHHhcCCC-----CCHHHHH----HHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -SIAYVSQTSW--I-QSGSIRDNILYGKP-----MDKARYD----KAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -~i~yv~Q~~~--~-~~~ti~eni~~g~~-----~~~~~~~----~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|++. + .+.|++||+.++.. .+++..+ +.++..++.. .....++.+||||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~ 151 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE----------EVLNRYPHELSGGQR 151 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh----------hHhhCCchhcCHHHH
Confidence 3899999983 3 46799999976421 1111111 2223333311 123467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
||++||||++++|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++.+.. ||++++|++|++++.|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999999999999988766554444 8999999999999885 8999999999998754
No 255
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-35 Score=333.68 Aligned_cols=204 Identities=26% Similarity=0.398 Sum_probs=168.2
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCc--cC---CCcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PK---ISGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~--~~---~~G~i~~~g---------- 658 (1354)
.++++|++++|+. +++++|+||++++||+++|+||||||||||+++|+|+. +| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 5889999999973 46999999999999999999999999999999999985 36 589998865
Q ss_pred -----eEEEEeCCCCCCCCcHHHHHhcCCC---C-CH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -----~i~yv~Q~~~~~~~ti~eni~~g~~---~-~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|++.+++.|++||+.++.. . ++ ++..++++.+++...+. +..++++.+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHH
Confidence 3899999999888999999986521 1 11 12233444444432221 123467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
||++||||++.+|+++||||||++||+.+.+.+++.+... .+++|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGL-KDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQ 233 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHH-hhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999988765443 446899999999998765 89999999999999999999
Q ss_pred HHhc
Q 000680 805 LLLA 808 (1354)
Q Consensus 805 l~~~ 808 (1354)
+.++
T Consensus 234 ~~~~ 237 (252)
T PRK14239 234 MFMN 237 (252)
T ss_pred HHhC
Confidence 8654
No 256
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-35 Score=333.07 Aligned_cols=204 Identities=27% Similarity=0.435 Sum_probs=169.1
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~-----~~~G~i~~~g---------- 658 (1354)
.++++|++|+|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4889999999963 469999999999999999999999999999999999987 4799998766
Q ss_pred -----eEEEEeCCCCCCCCcHHHHHhcCCC---C-CH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -----~i~yv~Q~~~~~~~ti~eni~~g~~---~-~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|++.+++.|++||+.++.. . ++ ++..++++.+++..+.. ...+.++.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK-------DNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchH-------HHhccChhhCCHHHH
Confidence 3899999999888999999987532 1 11 23344445444432111 112467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
||++||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++++.. +|+|++|++|++++.|+.++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMEL-KHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEE 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHH-HcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999987765544 456899999999999876 89999999999999999998
Q ss_pred HHhc
Q 000680 805 LLLA 808 (1354)
Q Consensus 805 l~~~ 808 (1354)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14251 233 MFIA 236 (251)
T ss_pred HHhC
Confidence 8643
No 257
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-35 Score=332.66 Aligned_cols=194 Identities=26% Similarity=0.411 Sum_probs=163.4
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------eEEEEeCC
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQT 666 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------~i~yv~Q~ 666 (1354)
++++|+++.|+. .++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| .++|++|+
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~ 78 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQN 78 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCC
Confidence 678999999963 4699999999999999999999999999999999999999999999976 38999999
Q ss_pred CCCCC-CcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000680 667 SWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1354)
Q Consensus 667 ~~~~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~ 738 (1354)
+.++. .|++||+.++.. .. .++..++++..++.+.+ ..++.+||||||||++||||++.+|
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qrl~laral~~~p 147 (255)
T PRK11248 79 EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAE-----------KRYIWQLSGGQRQRVGIARALAANP 147 (255)
T ss_pred CccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHh-----------hCChhhCCHHHHHHHHHHHHHhcCC
Confidence 87765 699999987521 22 12345555555554332 2466789999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEcCCcchhhh-cCEEEEEe--CCeEEEecCh
Q 000680 739 DIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLE--GGQITQSGNY 802 (1354)
Q Consensus 739 ~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~--~G~i~~~g~~ 802 (1354)
+++||||||++||+.+.+.+.+.+.... .+|+|+|++||+++.+.. ||++++|+ +|++++.++.
T Consensus 148 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 148 QLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999887665543 348999999999999876 89999998 5999987654
No 258
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-35 Score=332.50 Aligned_cols=204 Identities=28% Similarity=0.423 Sum_probs=168.8
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-----~~G~i~~~g---------- 658 (1354)
.++++|+++.|+. .++++|+||+|++||+++|+||||||||||+++|+|..++ ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 3 KISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred eEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 5889999999963 3699999999999999999999999999999999998763 699998875
Q ss_pred -----eEEEEeCCCCCCCCcHHHHHhcCCC---C-C----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -----~i~yv~Q~~~~~~~ti~eni~~g~~---~-~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|++.+++.|++||+.++.. . + +++..+.++.+++.+++. ...++++.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHHH
Confidence 3899999998877999999987632 1 1 123334444554433322 123467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
||++||||++.+|++++|||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. +|++++|++|++++.|+.++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQEL-KKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999987655443 457899999999998876 89999999999999999988
Q ss_pred HHhc
Q 000680 805 LLLA 808 (1354)
Q Consensus 805 l~~~ 808 (1354)
+...
T Consensus 232 ~~~~ 235 (250)
T PRK14240 232 LFTN 235 (250)
T ss_pred HHhC
Confidence 7643
No 259
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=2.6e-35 Score=327.06 Aligned_cols=190 Identities=24% Similarity=0.352 Sum_probs=159.3
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------------- 658 (1354)
++++|+++.|+. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 678999999942 24699999999999999999999999999999999999999999998876
Q ss_pred eEEEEeCCCCC-CCCcHHHHHhcCCC---CCHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 659 SIAYVSQTSWI-QSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 659 ~i~yv~Q~~~~-~~~ti~eni~~g~~---~~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
.++|++|+|.+ ++.|++||+.++.. .+.+ +.++.++..++.+.+ .....+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKA-----------KNFPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCCchhCCHHHHHHHHH
Confidence 38999999876 57899999987531 2222 233444444444332 24567899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEE
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1354)
|||++++|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++++.. ||+|++|++|+++
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 999999999999999999999999999887665544467899999999999987 7999999999986
No 260
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-35 Score=346.03 Aligned_cols=198 Identities=28% Similarity=0.437 Sum_probs=168.7
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------------- 658 (1354)
+++ |++++|+. . .+ |+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 455 78888863 2 23 99999999999999999999999999999999999999998765
Q ss_pred -eEEEEeCCCCCC-CCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh
Q 000680 659 -SIAYVSQTSWIQ-SGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 659 -~i~yv~Q~~~~~-~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1354)
.++|++|++.++ +.|++||+.++.. .+.++.+++++.+++.+.++ .++.+|||||||||+||||++
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLD-----------RYPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhh-----------CCcccCCHHHHHHHHHHHHHH
Confidence 389999999876 5799999998743 23455666777776654433 456789999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhcC
Q 000680 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
.+|+++||||||++||+...+.+.+.+.....+ |+|+|+||||++.+.. ||++++|++|++++.|+++++..+.
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 999999999999999999999988776554443 7899999999998766 8999999999999999999998664
No 261
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-35 Score=332.80 Aligned_cols=204 Identities=27% Similarity=0.394 Sum_probs=170.8
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~-----~~~G~i~~~g---------- 658 (1354)
.++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 5899999999963 368999999999999999999999999999999999976 4799998865
Q ss_pred -----eEEEEeCCCCCCCCcHHHHHhcCCCC---C---HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 000680 659 -----SIAYVSQTSWIQSGSIRDNILYGKPM---D---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1354)
Q Consensus 659 -----~i~yv~Q~~~~~~~ti~eni~~g~~~---~---~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1354)
+++|++|++.+++.|++||+.++... . +++..++++.+++..++.. ..+.++.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHH
Confidence 38999999988878999999876421 1 2234445566666544331 1346788999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEe---------CCeEE
Q 000680 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLE---------GGQIT 797 (1354)
Q Consensus 728 v~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~---------~G~i~ 797 (1354)
++||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|+ +|+++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~ 238 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHEL-KEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLV 238 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 99999999999999999999999999999987655443 446899999999999876 89999998 89999
Q ss_pred EecChHHHHhc
Q 000680 798 QSGNYQELLLA 808 (1354)
Q Consensus 798 ~~g~~~~l~~~ 808 (1354)
+.|+.+++.+.
T Consensus 239 ~~~~~~~~~~~ 249 (264)
T PRK14243 239 EFDRTEKIFNS 249 (264)
T ss_pred EeCCHHHHHhC
Confidence 99999998754
No 262
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=3.1e-35 Score=331.29 Aligned_cols=199 Identities=22% Similarity=0.276 Sum_probs=162.1
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCc--cCCCcEEEEcC--------------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLYG-------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~--~~~~G~i~~~g-------------- 658 (1354)
++++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+. +|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 468999999963 46999999999999999999999999999999999995 79999999876
Q ss_pred eEEEEeCCCCCCC-CcHHHHHhcCCC----------CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCC-CCCh
Q 000680 659 SIAYVSQTSWIQS-GSIRDNILYGKP----------MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGL-NLSG 722 (1354)
Q Consensus 659 ~i~yv~Q~~~~~~-~ti~eni~~g~~----------~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~-~LSg 722 (1354)
.++|++|++.++. .|++||+.+... .+. ++..++++..++..++ ...+.. +|||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~~LS~ 147 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF----------LNRSVNEGFSG 147 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh----------cccccccCcCH
Confidence 2899999987754 599999976421 111 2233344444443221 113344 5999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh--cCEEEEEeCCeEEEec
Q 000680 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE--VDRILVLEGGQITQSG 800 (1354)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~--~d~i~~l~~G~i~~~g 800 (1354)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999887665554468999999999999876 6999999999999999
Q ss_pred ChHHHH
Q 000680 801 NYQELL 806 (1354)
Q Consensus 801 ~~~~l~ 806 (1354)
+++++.
T Consensus 228 ~~~~~~ 233 (243)
T TIGR01978 228 DVELAK 233 (243)
T ss_pred CHHHhc
Confidence 887653
No 263
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=2.1e-35 Score=325.78 Aligned_cols=188 Identities=29% Similarity=0.433 Sum_probs=158.2
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------e
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------------~ 659 (1354)
++++|++++|+. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 468999999964 4699999999999999999999999999999999999999999998876 2
Q ss_pred EEEEeCCCCCCC-CcHHHHHhcCC----CCCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 660 IAYVSQTSWIQS-GSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 660 i~yv~Q~~~~~~-~ti~eni~~g~----~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
++|++|++.++. .|++||+.++. ..+. ++..+.++.+++.+.+ ..+..+||||||||++|
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~l 146 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKA-----------DAYPAQLSGGQQQRVAI 146 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHh-----------hhCccccCHHHHHHHHH
Confidence 899999998764 79999998752 1222 2334444555554332 35667899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeE
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1354)
|||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999887665544468999999999999876 899999999975
No 264
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=6e-35 Score=332.82 Aligned_cols=206 Identities=19% Similarity=0.311 Sum_probs=169.8
Q ss_pred cEEEEeeEEEeCCC------CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------
Q 000680 594 SVKIQEGNFSWDPE------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~------~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------- 658 (1354)
.++++|++++|+.. .+.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 58899999999631 124699999999999999999999999999999999999999999999876
Q ss_pred ----eEEEEeCCCC--C-CCCcHHHHHhcCC----CCCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChH
Q 000680 659 ----SIAYVSQTSW--I-QSGSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1354)
Q Consensus 659 ----~i~yv~Q~~~--~-~~~ti~eni~~g~----~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgG 723 (1354)
.++|++|++. + ...|+.+|+.++. .... ++..++++.+++..+.. .....+||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LS~G 153 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA----------SYYPHMLAPG 153 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHH----------hcCchhcCHH
Confidence 3899999984 3 3459999987532 1221 23445566666632221 2355789999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecC
Q 000680 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1354)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1354)
||||++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999998876665444 38899999999999986 89999999999999999
Q ss_pred hHHHHhcC
Q 000680 802 YQELLLAG 809 (1354)
Q Consensus 802 ~~~l~~~~ 809 (1354)
++++.+..
T Consensus 234 ~~~~~~~~ 241 (267)
T PRK15112 234 TADVLASP 241 (267)
T ss_pred HHHHhcCC
Confidence 99987653
No 265
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=6.7e-35 Score=328.52 Aligned_cols=199 Identities=26% Similarity=0.398 Sum_probs=171.5
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCCCCC
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQS 671 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~~~~~~ 671 (1354)
.++++|+++.|+. .++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| .++|++|++.++.
T Consensus 4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~ 80 (251)
T PRK09544 4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDT 80 (251)
T ss_pred EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEecccccccc
Confidence 4789999999973 4699999999999999999999999999999999999999999999987 5999999986643
Q ss_pred ---CcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 000680 672 ---GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFS 748 (1354)
Q Consensus 672 ---~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s 748 (1354)
.|+++|+.+......++..++++.+++.+.++ .+..+||||||||++||||++.+|+++||||||+
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~ 149 (251)
T PRK09544 81 TLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLID-----------APMQKLSGGETQRVLLARALLNRPQLLVLDEPTQ 149 (251)
T ss_pred ccChhHHHHHhccccccHHHHHHHHHHcCChHHHh-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 48999987654445566777788887765443 4567899999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 749 AVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 749 ~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
+||+.+.+.+++.+.....+ ++|+|++||+++++.. +|+|++|++ ++++.|+++++.+
T Consensus 150 ~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~ 209 (251)
T PRK09544 150 GVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL 209 (251)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC
Confidence 99999999988766554444 7899999999999865 899999965 7999999998864
No 266
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=3.7e-35 Score=310.04 Aligned_cols=161 Identities=26% Similarity=0.441 Sum_probs=145.9
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCCCCCC
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSG 672 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~~~~~~~ 672 (1354)
|+++|++++|+.+ +++|+|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++| +++|++|++.+++.
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~ 78 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLG 78 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccc
Confidence 4689999999642 4699999999999999999999999999999999999999999999987 79999999998889
Q ss_pred cHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCH
Q 000680 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752 (1354)
Q Consensus 673 ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~ 752 (1354)
|++||+.++ ++.+||||||||++||||++++|++++|||||++||+
T Consensus 79 tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~ 124 (166)
T cd03223 79 TLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124 (166)
T ss_pred cHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCH
Confidence 999999864 2457999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCC
Q 000680 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGG 794 (1354)
Q Consensus 753 ~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G 794 (1354)
++.+.+.+.+.. . ++|+|++||+.+....||++++|++|
T Consensus 125 ~~~~~l~~~l~~-~--~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 125 ESEDRLYQLLKE-L--GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred HHHHHHHHHHHH-h--CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 999998775543 2 58999999999887779999999876
No 267
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-35 Score=342.48 Aligned_cols=208 Identities=20% Similarity=0.349 Sum_probs=168.9
Q ss_pred cEEEEeeEEEeCCCCC-CCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc----CCCcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELA-IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP----KISGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~-~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~----~~~G~i~~~g---------- 658 (1354)
-++++|++++|+.... ..+|+||||+|++||+++|+|+||||||||+++|+|+++ +++|+|.++|
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3789999999975322 368999999999999999999999999999999999997 4899999877
Q ss_pred -------eEEEEeCCCC---CCCCcHHHHHhcC----CCCC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCC
Q 000680 659 -------SIAYVSQTSW---IQSGSIRDNILYG----KPMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1354)
Q Consensus 659 -------~i~yv~Q~~~---~~~~ti~eni~~g----~~~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~L 720 (1354)
.|+|++|+|. .+..|+.+++... .... +++..+.++..+|.+. ....+..+.+|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~--------~~~l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP--------ASRLDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------HHHHhCCchhC
Confidence 2899999984 2446887766432 1112 2234445555555321 11234678899
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEE
Q 000680 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1354)
Q Consensus 721 SgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1354)
||||||||+||||++.+|+++|+||||++||+.+.+.+.+.+..... .|.|+|+||||++.+.. ||+|++|++|+|++
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999887665543 48999999999999865 89999999999999
Q ss_pred ecChHHHHhcC
Q 000680 799 SGNYQELLLAG 809 (1354)
Q Consensus 799 ~g~~~~l~~~~ 809 (1354)
.|+.+++.++.
T Consensus 235 ~g~~~~~~~~p 245 (326)
T PRK11022 235 TGKAHDIFRAP 245 (326)
T ss_pred ECCHHHHhhCC
Confidence 99999998654
No 268
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-35 Score=333.89 Aligned_cols=205 Identities=24% Similarity=0.374 Sum_probs=168.7
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC---------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG--------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~-----~~~G~i~~~g--------- 658 (1354)
..++++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 23 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 23 VVFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred eEEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 36999999999973 368999999999999999999999999999999999987 6999998866
Q ss_pred ------eEEEEeCCCCCCCCcHHHHHhcCCC---C-CHHH----HHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHH
Q 000680 659 ------SIAYVSQTSWIQSGSIRDNILYGKP---M-DKAR----YDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1354)
Q Consensus 659 ------~i~yv~Q~~~~~~~ti~eni~~g~~---~-~~~~----~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQ 724 (1354)
.++|++|++.++..|++||+.++.. . +++. ..+.++..++..++. ...++++.+|||||
T Consensus 100 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-------~~~~~~~~~LSgGe 172 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK-------DRLHDNAYGLSGGQ 172 (271)
T ss_pred HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHH-------HHHhcCcccCCHHH
Confidence 3899999998888899999987531 1 1111 122233332222222 12356788999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChH
Q 000680 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1354)
Q Consensus 725 kqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1354)
|||++||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++++.. ||++++|++|++++.|+++
T Consensus 173 ~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~ 251 (271)
T PRK14238 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQEL-KKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTD 251 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHH-HcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999988755443 447899999999999876 8999999999999999999
Q ss_pred HHHhc
Q 000680 804 ELLLA 808 (1354)
Q Consensus 804 ~l~~~ 808 (1354)
++..+
T Consensus 252 ~~~~~ 256 (271)
T PRK14238 252 KIFSN 256 (271)
T ss_pred HHHcC
Confidence 88654
No 269
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=3.3e-35 Score=313.03 Aligned_cols=160 Identities=38% Similarity=0.598 Sum_probs=146.6
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~ 661 (1354)
++++|++++|+.. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4689999999743 24699999999999999999999999999999999999999999999876 489
Q ss_pred EEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEE
Q 000680 662 YVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741 (1354)
Q Consensus 662 yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~il 741 (1354)
|++|++++++.|++||+ ||||||||++||||++++|+++
T Consensus 80 ~~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~l 118 (173)
T cd03246 80 YLPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRIL 118 (173)
T ss_pred EECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 99999998888999998 9999999999999999999999
Q ss_pred EEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeE
Q 000680 742 LFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1354)
Q Consensus 742 lLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i 796 (1354)
||||||++||+++.+.+.+.+.....+|+|+|++||+++.+..||++++|++|++
T Consensus 119 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 119 VLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 9999999999999999987665544568999999999999878999999999975
No 270
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-35 Score=333.61 Aligned_cols=207 Identities=24% Similarity=0.394 Sum_probs=171.4
Q ss_pred CCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC-------
Q 000680 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG------- 658 (1354)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~-----~~~G~i~~~g------- 658 (1354)
....++++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 22 ~~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~ 98 (272)
T PRK14236 22 EQTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK 98 (272)
T ss_pred CCcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccc
Confidence 3456999999999963 369999999999999999999999999999999999987 4899998765
Q ss_pred --------eEEEEeCCCCCCCCcHHHHHhcCCC---C-C----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCCh
Q 000680 659 --------SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1354)
Q Consensus 659 --------~i~yv~Q~~~~~~~ti~eni~~g~~---~-~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSg 722 (1354)
.++|++|++.+++.|++||+.++.. . . +++..++++..++.+++. +..++++.+|||
T Consensus 99 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~ 171 (272)
T PRK14236 99 VDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSG 171 (272)
T ss_pred cCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCH
Confidence 4899999998887899999987522 1 1 122344445445543322 234577889999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecC
Q 000680 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1354)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1354)
|||||++||||++++|++++|||||++||+.+.+.+.+.+.... +++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 172 Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~-~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~ 250 (272)
T PRK14236 172 GQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELK-SKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGD 250 (272)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999998877655443 47899999999999865 89999999999999999
Q ss_pred hHHHHhc
Q 000680 802 YQELLLA 808 (1354)
Q Consensus 802 ~~~l~~~ 808 (1354)
++++.+.
T Consensus 251 ~~~~~~~ 257 (272)
T PRK14236 251 TDTLFTS 257 (272)
T ss_pred HHHHhcC
Confidence 9987643
No 271
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=6.4e-35 Score=326.95 Aligned_cols=199 Identities=33% Similarity=0.441 Sum_probs=167.6
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i~yv 663 (1354)
++++|++++|+. +++|+|+||++.+||+++|+|+||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~ 77 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFV 77 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEE
Confidence 468999999974 3699999999999999999999999999999999999999999998875 48999
Q ss_pred eCCCCCCC-CcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh
Q 000680 664 SQTSWIQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 664 ~Q~~~~~~-~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1354)
||+|.++. .|++||+.++.. .+. ++..++++..++.+.. .....+||||||||++||||++
T Consensus 78 ~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lS~G~~qrl~laral~ 146 (237)
T TIGR00968 78 FQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLG-----------DRYPNQLSGGQRQRVALARALA 146 (237)
T ss_pred ecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHh-----------hCChhhCCHHHHHHHHHHHHHh
Confidence 99998775 599999987642 121 2233444444443322 2456789999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
++|++++||||+++||+++.+.+.+.+.....+ ++|+|++||+++.+.. ||++++|++|++++.|+.+++.+
T Consensus 147 ~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 147 VEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 999999999999999999999988766554444 7999999999999876 89999999999999999998864
No 272
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-35 Score=331.28 Aligned_cols=204 Identities=26% Similarity=0.369 Sum_probs=167.3
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-----~~G~i~~~g---------- 658 (1354)
.++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4789999999963 4699999999999999999999999999999999999987 499998865
Q ss_pred -----eEEEEeCCCCCCC-CcHHHHHhcCCC---C--CHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChH
Q 000680 659 -----SIAYVSQTSWIQS-GSIRDNILYGKP---M--DKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1354)
Q Consensus 659 -----~i~yv~Q~~~~~~-~ti~eni~~g~~---~--~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgG 723 (1354)
.++|++|++.++. .|++||+.++.. . ..+ +..++++..++..++. .....++.+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccChhhCCHH
Confidence 3899999998765 599999987531 1 121 2233333333322221 1234677899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecCh
Q 000680 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1354)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1354)
||||++||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 232 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL-KKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPT 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999988766544 346899999999999875 899999999999999999
Q ss_pred HHHHhc
Q 000680 803 QELLLA 808 (1354)
Q Consensus 803 ~~l~~~ 808 (1354)
+++.+.
T Consensus 233 ~~~~~~ 238 (253)
T PRK14267 233 RKVFEN 238 (253)
T ss_pred HHHHhC
Confidence 988654
No 273
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-35 Score=331.67 Aligned_cols=203 Identities=27% Similarity=0.404 Sum_probs=166.7
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC-----------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG----------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~-----~~~G~i~~~g----------- 658 (1354)
-+++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 468899999963 469999999999999999999999999999999999986 4799998865
Q ss_pred ----eEEEEeCCCCCCCCcHHHHHhcCCC---C--CHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 ----SIAYVSQTSWIQSGSIRDNILYGKP---M--DKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 ----~i~yv~Q~~~~~~~ti~eni~~g~~---~--~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|++.+++.|++||+.++.. . +.+ +..++++..++.+++. +.++.++.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHH
Confidence 3899999998888899999987521 1 111 2233444444432211 123467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++++.. ||++++|++|++++.|+.++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQEL-KKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQE 234 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999887655443 458999999999999876 89999999999999999988
Q ss_pred HHhc
Q 000680 805 LLLA 808 (1354)
Q Consensus 805 l~~~ 808 (1354)
+.+.
T Consensus 235 ~~~~ 238 (251)
T PRK14244 235 IFKN 238 (251)
T ss_pred HhcC
Confidence 8654
No 274
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-35 Score=330.39 Aligned_cols=204 Identities=26% Similarity=0.381 Sum_probs=168.2
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-----~~G~i~~~g---------- 658 (1354)
.++++|+++.|++ .++++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4789999999963 4689999999999999999999999999999999999874 899998865
Q ss_pred -----eEEEEeCCCCCCCCcHHHHHhcCCC---C-CHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-DKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -----~i~yv~Q~~~~~~~ti~eni~~g~~---~-~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|++.++..|++||+.++.. . .++ +.++.++..++..+++ +..++++.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHH
Confidence 3899999998888999999987521 1 111 2233344444433221 123567889999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
||++||||++++|++++|||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. +|++++|++|++++.|+.++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEEL-SENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTRE 231 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHH-hcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999999987665544 457899999999998765 89999999999999999998
Q ss_pred HHhc
Q 000680 805 LLLA 808 (1354)
Q Consensus 805 l~~~ 808 (1354)
+.+.
T Consensus 232 ~~~~ 235 (250)
T PRK14262 232 IVER 235 (250)
T ss_pred HHhC
Confidence 8653
No 275
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9e-35 Score=329.09 Aligned_cols=205 Identities=24% Similarity=0.369 Sum_probs=169.2
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc--C---CCcEEEEcC---------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--K---ISGTVNLYG--------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~--~---~~G~i~~~g--------- 658 (1354)
+.++++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ | ++|+|.++|
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 46899999999973 469999999999999999999999999999999999986 4 689998866
Q ss_pred ------eEEEEeCCCCCCC-CcHHHHHhcCCC----CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChH
Q 000680 659 ------SIAYVSQTSWIQS-GSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1354)
Q Consensus 659 ------~i~yv~Q~~~~~~-~ti~eni~~g~~----~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgG 723 (1354)
.++|++|++.++. .|++||+.++.. .+. ++..+.++.+++...+.. ..+..+.+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcCcCCHH
Confidence 2899999998766 699999986421 122 233445555555432221 123567899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecCh
Q 000680 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1354)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1354)
||||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+.
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~-~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 231 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEEL-KEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGET 231 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-HhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999987755443 456899999999999865 899999999999999999
Q ss_pred HHHHhc
Q 000680 803 QELLLA 808 (1354)
Q Consensus 803 ~~l~~~ 808 (1354)
+++...
T Consensus 232 ~~~~~~ 237 (252)
T PRK14256 232 KKIFTT 237 (252)
T ss_pred HHHHhC
Confidence 988654
No 276
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-35 Score=328.88 Aligned_cols=203 Identities=25% Similarity=0.381 Sum_probs=168.2
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-----~~G~i~~~g---------- 658 (1354)
.++++|+++.|+. +++|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4789999999963 4699999999999999999999999999999999999986 599998865
Q ss_pred ----eEEEEeCCCCCCCCcHHHHHhcCCC---CC-H----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHH
Q 000680 659 ----SIAYVSQTSWIQSGSIRDNILYGKP---MD-K----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1354)
Q Consensus 659 ----~i~yv~Q~~~~~~~ti~eni~~g~~---~~-~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkq 726 (1354)
.++|++|++.+++.|++||+.++.. .. + ++..+.++..++.+++. ....+++.+|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHH
Confidence 3899999998888999999987532 11 1 12233444444443332 2234677899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHH
Q 000680 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 727 Rv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1354)
||+||||++.+|+++||||||++||+++.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+.+++
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEEL-KKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999987755443 446899999999999876 899999999999999998887
Q ss_pred Hh
Q 000680 806 LL 807 (1354)
Q Consensus 806 ~~ 807 (1354)
..
T Consensus 232 ~~ 233 (249)
T PRK14253 232 FS 233 (249)
T ss_pred Hc
Confidence 54
No 277
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=9.4e-35 Score=320.41 Aligned_cols=190 Identities=25% Similarity=0.419 Sum_probs=161.1
Q ss_pred EEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEEe
Q 000680 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYVS 664 (1354)
Q Consensus 596 ~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i~yv~ 664 (1354)
+++|+++.|+. .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++
T Consensus 2 ~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~ 76 (213)
T TIGR01277 2 ALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLF 76 (213)
T ss_pred eEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEe
Confidence 68899999962 46799999999999999999999999999999999999999999876 389999
Q ss_pred CCCCCCC-CcHHHHHhcCC-C-C-----CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhc
Q 000680 665 QTSWIQS-GSIRDNILYGK-P-M-----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN 736 (1354)
Q Consensus 665 Q~~~~~~-~ti~eni~~g~-~-~-----~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~ 736 (1354)
|+|.++. .|++||+.++. + . ++++..++++..++.+..+ ....+||||||||++||||++.
T Consensus 77 q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~laral~~ 145 (213)
T TIGR01277 77 QENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLD-----------RLPEQLSGGQRQRVALARCLVR 145 (213)
T ss_pred ccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhh-----------CCcccCCHHHHHHHHHHHHHhc
Confidence 9998765 69999998642 1 1 1234555666666654433 4456899999999999999999
Q ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecC
Q 000680 737 DADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1354)
Q Consensus 737 ~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1354)
+|++++|||||++||+.+.+.+.+.+..... .++|+|++||+++++.. +|++++|++|++++.|.
T Consensus 146 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 146 PNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999998876655444 37899999999999875 89999999999998874
No 278
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=8.9e-35 Score=330.16 Aligned_cols=206 Identities=21% Similarity=0.295 Sum_probs=165.5
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------- 658 (1354)
.++++|+++.|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 5899999999964 4699999999999999999999999999999999999999999998765
Q ss_pred -------eEEEEeCCCC--C-CCCcHHHHHhcCC----CCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHH
Q 000680 659 -------SIAYVSQTSW--I-QSGSIRDNILYGK----PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1354)
Q Consensus 659 -------~i~yv~Q~~~--~-~~~ti~eni~~g~----~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQ 724 (1354)
.++|++|++. + .+.|+.||+.+.. ..+....++ ...+.++.++.++ +..++++.+|||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~-~~~~~~~~~LS~Gq 156 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERVEIDA-ARIDDLPTTFSGGM 156 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHcCCCh-hHHhCCCccCCHHH
Confidence 2899999984 2 3468999986421 111111111 0112233333221 23457788999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecCh
Q 000680 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1354)
Q Consensus 725 kqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1354)
|||++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++++.. ||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~ 236 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLT 236 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999998876654433 38899999999999985 899999999999999999
Q ss_pred HHHHhc
Q 000680 803 QELLLA 808 (1354)
Q Consensus 803 ~~l~~~ 808 (1354)
+++..+
T Consensus 237 ~~~~~~ 242 (258)
T PRK11701 237 DQVLDD 242 (258)
T ss_pred HHHhcC
Confidence 988644
No 279
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.3e-36 Score=305.87 Aligned_cols=208 Identities=22% Similarity=0.355 Sum_probs=169.6
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~ 659 (1354)
.+..+|...+|.. +++.+|+||+|++||+|++.||||+||||.+.++.|+.+|++|+|.+++ .
T Consensus 4 ~L~a~~l~K~y~k---r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 4 TLVAENLAKSYKK---RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred EEEehhhhHhhCC---eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 4567788888874 5699999999999999999999999999999999999999999999987 3
Q ss_pred EEEEeCCCCCCC-CcHHHHHhcCCCCCH---HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh
Q 000680 660 IAYVSQTSWIQS-GSIRDNILYGKPMDK---ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 660 i~yv~Q~~~~~~-~ti~eni~~g~~~~~---~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1354)
|||+||+|.+|. .||+|||..-.++.+ +.-++..+.-+|-+++.. . ..-..++.+||||||+|+.|||||.
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i---~--hlr~~~a~sLSGGERRR~EIARaLa 155 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHI---T--HLRDSKAYSLSGGERRRVEIARALA 155 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhch---H--HHhcCcccccccchHHHHHHHHHHh
Confidence 999999999985 599999986543321 211222222233333321 1 1113778999999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcch-hhhcCEEEEEeCCeEEEecChHHHHhcC
Q 000680 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~-l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
.+|+.+||||||+++||.....|-+.+.....+|-.|+++-|++.+ +.-|||.+++.+|+|..+|+++|+.+++
T Consensus 156 ~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 156 ANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred cCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 9999999999999999999999865554555678899999999865 6779999999999999999999998654
No 280
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.6e-35 Score=326.44 Aligned_cols=200 Identities=30% Similarity=0.408 Sum_probs=169.0
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i~yv 663 (1354)
+.++|++++|+. +++++|+||++++||+++|+|+||||||||+++|+|+++|.+|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTV 77 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEE
Confidence 468999999974 3699999999999999999999999999999999999999999999876 48999
Q ss_pred eCCCCCCC-CcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh
Q 000680 664 SQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 664 ~Q~~~~~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1354)
+|++..+. .|++||+.++.. .+ ++++.++++..++.+.++ ....+||||||||++||||++
T Consensus 78 ~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qrl~laral~ 146 (232)
T cd03300 78 FQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYAN-----------RKPSQLSGGQQQRVAIARALV 146 (232)
T ss_pred ecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHHHHh
Confidence 99998774 599999986521 12 234445555555544333 455789999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++++.. ||++++|++|++.+.|+.+++...
T Consensus 147 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 147 NEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 99999999999999999999998876654443 38999999999999876 899999999999999998887643
No 281
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-35 Score=329.05 Aligned_cols=204 Identities=25% Similarity=0.345 Sum_probs=168.4
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-----~~G~i~~~g---------- 658 (1354)
.|+++|+++.|+. +++|+|+||++++||+++|+||||||||||+++|+|+.++ ++|+|.++|
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 5899999999963 4699999999999999999999999999999999998753 489998765
Q ss_pred -----eEEEEeCCCCCCCCcHHHHHhcCCCC----CHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -----SIAYVSQTSWIQSGSIRDNILYGKPM----DKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -----~i~yv~Q~~~~~~~ti~eni~~g~~~----~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|++.+++.|++||+.++... +.. +..++++..++.+++. +..++++.+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK-------DRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhH-------HHhhcChhhCCHHHH
Confidence 38999999988888999999986321 111 2233344444433222 234577889999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. +|++++|++|++++.|+.++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~-~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDL-KKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQ 234 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHH
Confidence 9999999999999999999999999999999987655443 346899999999999875 89999999999999999998
Q ss_pred HHhc
Q 000680 805 LLLA 808 (1354)
Q Consensus 805 l~~~ 808 (1354)
+.+.
T Consensus 235 ~~~~ 238 (253)
T PRK14261 235 IFEN 238 (253)
T ss_pred HHhC
Confidence 8643
No 282
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-35 Score=340.93 Aligned_cols=208 Identities=19% Similarity=0.289 Sum_probs=169.4
Q ss_pred cEEEEeeEEEeCCCC-CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc----CCCcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP----KISGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~----~~~G~i~~~g---------- 658 (1354)
.++++|++++|+... ...+++|+||+|++||+++|+|+||||||||+++|+|+.+ +++|+|.++|
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 478999999996432 2469999999999999999999999999999999999986 5899999876
Q ss_pred -------eEEEEeCCCCC---CCCcHHHHHhcCC---CC------C----HHHHHHHHHHhccHHHHhcCCCCCcccccC
Q 000680 659 -------SIAYVSQTSWI---QSGSIRDNILYGK---PM------D----KARYDKAIKACALDKDINNFDHGDLTEIGQ 715 (1354)
Q Consensus 659 -------~i~yv~Q~~~~---~~~ti~eni~~g~---~~------~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~ 715 (1354)
.|+|++|+|.. +..||.+|+.... .. + .++..+.++..+|.+.. ....+
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK--------DAMRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChH--------HHHhC
Confidence 39999999852 4569999986421 00 1 12344455555553211 11235
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeC
Q 000680 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEG 793 (1354)
Q Consensus 716 ~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~ 793 (1354)
.+.+|||||||||+||||++.+|+++|+||||++||+.+.+++.+.+..... .|.|+|+||||++.+.. ||+|++|++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 6789999999999999999999999999999999999999999877665444 48999999999999976 899999999
Q ss_pred CeEEEecChHHHHhcC
Q 000680 794 GQITQSGNYQELLLAG 809 (1354)
Q Consensus 794 G~i~~~g~~~~l~~~~ 809 (1354)
|+|++.|+.+++.++.
T Consensus 235 G~ive~g~~~~i~~~p 250 (330)
T PRK15093 235 GQTVETAPSKELVTTP 250 (330)
T ss_pred CEEEEECCHHHHHhCC
Confidence 9999999999987653
No 283
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=1e-31 Score=322.29 Aligned_cols=437 Identities=18% Similarity=0.263 Sum_probs=303.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCC-----CCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHH
Q 000680 339 FFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKK-----HSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVL 412 (1354)
Q Consensus 339 ~~~~~~~~~rir~~l~~~iy~K~L~ls~~~~~~-----~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L 412 (1354)
.|..+++.++.|..|+.....|-|.-...-+-. +..-..=..++.|+..+.+... ....+....++++.-..+|
T Consensus 107 ~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iL 186 (604)
T COG4178 107 TWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGIL 186 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778999999999999999988755322111 1111233578888887766433 2333344445555555567
Q ss_pred HHHHhHHH---------HHHHH--HHHHHHHHHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHhhHHHHHHhchHH
Q 000680 413 FGVVGLGA---------LPGLV--LFLICGLLNVPFAKILQ----KCQS-EFMIAQDERLRSTSEILNNMKIIKLQSWEE 476 (1354)
Q Consensus 413 ~~~lG~~~---------l~gl~--v~~i~~~l~~~~~~~~~----~~q~-~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~ 476 (1354)
|...|.-+ +.|.. ++++.+++...++-++. +... +....-|-|-.++ .+..+...|-+|.-|+
T Consensus 187 w~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lv-rv~enaE~IAly~GE~ 265 (604)
T COG4178 187 WSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLV-RVRENAEAIALYRGEK 265 (604)
T ss_pred HHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHH-HHHhhHHHHHHhcCcH
Confidence 75555221 22222 12223333333332222 2111 1222234455443 4667888999999997
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH---HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Q 000680 477 KFKSLIESRREKEFKWLSEAQL----RKAYGTVIYWMS---PTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPV 549 (1354)
Q Consensus 477 ~f~~~i~~~R~~El~~l~~~~~----~~~~~~~~~~~~---p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl 549 (1354)
.-.+++++.=..=++..++... +..++....+++ |.++..-- ++. +.++-+...++-..|+.+...+
T Consensus 266 ~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~-----~f~-g~i~~G~lmqa~~aF~~v~ssl 339 (604)
T COG4178 266 VERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPR-----YFS-GQITFGGLMQAVGAFGQVHSSL 339 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHh-----hhc-CcChHHHHHHHHHHHHHHHHHH
Confidence 7666554432222222222111 111111112222 22222111 223 6899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccC---CCcch--h--hhc--cccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEe
Q 000680 550 RMIPEALSIMIQVKVSFDRINAFLLDHE---LNNDD--V--RRI--SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDI 620 (1354)
Q Consensus 550 ~~lp~~i~~~~~a~vS~~Ri~~fL~~~e---~~~~~--~--~~~--~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i 620 (1354)
+.+-+....+.+=+.++.|+.+|-.+=| .+... . .+. .... +..|+++|++..-+.. .+.+++.|+++
T Consensus 340 swfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~nl~l~~p~~--~~ll~~l~~~v 416 (604)
T COG4178 340 SWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNA-DHGITLENLSLRTPDG--QTLLSELNFEV 416 (604)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccc-cceeEEeeeeEECCCC--Ceeeccceeee
Confidence 9999999999999999999999974322 11100 0 000 0111 5789999999988764 47899999999
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCCCCCCcHHHHHhcCCC---CCHHHHHHHHHH
Q 000680 621 KWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSGSIRDNILYGKP---MDKARYDKAIKA 695 (1354)
Q Consensus 621 ~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~~~~~~~ti~eni~~g~~---~~~~~~~~~~~~ 695 (1354)
++||.+.|.|+||||||||+++|.|+.|--+|+|.... .+-|+||.|.++.+|.||-|++... ++++.+.+++.+
T Consensus 417 ~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~ 496 (604)
T COG4178 417 RPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHK 496 (604)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999874 4899999999999999999999753 678899999999
Q ss_pred hccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEE
Q 000680 696 CALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILV 775 (1354)
Q Consensus 696 ~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilv 775 (1354)
|+|.+-.+++.+-+. --..||||||||+++||.++++|++++|||.|||||+.++..+++.+ +..+.+.|+|-|
T Consensus 497 vgL~~L~~rl~~~~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l-~~~lp~~tvISV 570 (604)
T COG4178 497 VGLGDLAERLDEEDR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLL-KEELPDATVISV 570 (604)
T ss_pred cCcHHHHHHHhccCc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHH-HhhCCCCEEEEe
Confidence 999998888765443 34579999999999999999999999999999999999999998754 556688999999
Q ss_pred cCCcchhhhcCEEEEE
Q 000680 776 THQVEFLSEVDRILVL 791 (1354)
Q Consensus 776 tH~~~~l~~~d~i~~l 791 (1354)
.|+.......++.+-+
T Consensus 571 ~Hr~tl~~~h~~~l~l 586 (604)
T COG4178 571 GHRPTLWNFHSRQLEL 586 (604)
T ss_pred ccchhhHHHHhhheee
Confidence 9998877766665544
No 284
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-34 Score=324.54 Aligned_cols=199 Identities=31% Similarity=0.454 Sum_probs=168.9
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i~yv 663 (1354)
++++|+++.|+. ++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~ 76 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYV 76 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEE
Confidence 468899999963 279999999999999999999999999999999999999999999987 48999
Q ss_pred eCCCCCC-CCcHHHHHhcCCCC---C----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh
Q 000680 664 SQTSWIQ-SGSIRDNILYGKPM---D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 664 ~Q~~~~~-~~ti~eni~~g~~~---~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1354)
+|++.++ ..|++||+.++... + .++..+.++.+++.+.++ +++.+||||||||++||||++
T Consensus 77 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~laral~ 145 (235)
T cd03299 77 PQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLN-----------RKPETLSGGEQQRVAIARALV 145 (235)
T ss_pred eecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHh-----------cCcccCCHHHHHHHHHHHHHH
Confidence 9998776 57999999875321 1 123345566666654443 456789999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
++|++++|||||++||+.+.+++.+.+..... +++|+|++||+++++.. +|++++|++|++++.|+++++.+.
T Consensus 146 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 146 VNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 99999999999999999999998876655433 38999999999999876 899999999999999999887654
No 285
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-34 Score=326.94 Aligned_cols=209 Identities=21% Similarity=0.289 Sum_probs=171.8
Q ss_pred CcEEEEeeEEEeCCC-----------------CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEE
Q 000680 593 RSVKIQEGNFSWDPE-----------------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~-----------------~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~ 655 (1354)
..|+++|++.+|... ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~ 82 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD 82 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence 457788888777642 134589999999999999999999999999999999999999999999
Q ss_pred EcCeEEEEeCCCCCC-CCcHHHHHhcCC---CCCHHHHH----HHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 000680 656 LYGSIAYVSQTSWIQ-SGSIRDNILYGK---PMDKARYD----KAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1354)
Q Consensus 656 ~~g~i~yv~Q~~~~~-~~ti~eni~~g~---~~~~~~~~----~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1354)
++|.++|++|++.+. ..|++||+.++. .++.+... ++++..++.+. +...+.+||||||||
T Consensus 83 ~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Gq~qr 151 (264)
T PRK13546 83 RNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEF-----------IYQPVKKYSSGMRAK 151 (264)
T ss_pred ECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hcCCcccCCHHHHHH
Confidence 999999999998765 569999997642 23333222 23333333322 235678999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHH
Q 000680 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806 (1354)
Q Consensus 728 v~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 806 (1354)
++||||++++|+++||||||++||+...+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 152 v~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (264)
T PRK13546 152 LGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVL 231 (264)
T ss_pred HHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999887665544568999999999999876 8999999999999999999988
Q ss_pred hcCchH
Q 000680 807 LAGTAF 812 (1354)
Q Consensus 807 ~~~~~~ 812 (1354)
.....+
T Consensus 232 ~~~~~~ 237 (264)
T PRK13546 232 PKYEAF 237 (264)
T ss_pred HHhHHH
Confidence 754433
No 286
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-34 Score=333.26 Aligned_cols=206 Identities=29% Similarity=0.450 Sum_probs=169.1
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC--------
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG-------- 658 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~-----~~~G~i~~~g-------- 658 (1354)
+..++++|+++.|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|
T Consensus 37 ~~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~ 113 (285)
T PRK14254 37 ETVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113 (285)
T ss_pred CceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 345899999999963 469999999999999999999999999999999999987 6899998865
Q ss_pred -------eEEEEeCCCCCCCCcHHHHHhcCCC---CC---HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -------SIAYVSQTSWIQSGSIRDNILYGKP---MD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -------~i~yv~Q~~~~~~~ti~eni~~g~~---~~---~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|++.++..|++||+.++.. .. .++.+++++..++...+. ...++++.+||||||
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LSgGe~ 186 (285)
T PRK14254 114 DPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVK-------DQLDSSGLDLSGGQQ 186 (285)
T ss_pred chHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhH-------HHHhCCcccCCHHHH
Confidence 3899999998877899999987521 11 233444555555432221 123467889999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEE-EEeCCeEEEecChH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRIL-VLEGGQITQSGNYQ 803 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~-~l~~G~i~~~g~~~ 803 (1354)
||++||||++++|+++||||||++||+.+.+.+.+.+.... +++|+|++||+++++.. +|+++ +|++|+|++.|+++
T Consensus 187 qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~-~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~ 265 (285)
T PRK14254 187 QRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA-EEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTD 265 (285)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHH
Confidence 99999999999999999999999999999999877655443 45899999999999876 89975 57999999999998
Q ss_pred HHHhc
Q 000680 804 ELLLA 808 (1354)
Q Consensus 804 ~l~~~ 808 (1354)
++.++
T Consensus 266 ~~~~~ 270 (285)
T PRK14254 266 KIFEN 270 (285)
T ss_pred HHHhC
Confidence 87643
No 287
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-34 Score=331.04 Aligned_cols=200 Identities=26% Similarity=0.418 Sum_probs=166.2
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------eEEEE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAYV 663 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g----------~i~yv 663 (1354)
.++++|++++|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 6 ~l~~~~l~~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v 83 (272)
T PRK15056 6 GIVVNDVTVTWRN--GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYV 83 (272)
T ss_pred eEEEEeEEEEecC--CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEe
Confidence 5899999999963 24699999999999999999999999999999999999999999999887 39999
Q ss_pred eCCCCC---CCCcHHHHHhcCCC--------C---CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 000680 664 SQTSWI---QSGSIRDNILYGKP--------M---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1354)
Q Consensus 664 ~Q~~~~---~~~ti~eni~~g~~--------~---~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1354)
+|++.+ ...++++|+.++.. . ++++..++++..++.+.. ..+..+||||||||++
T Consensus 84 ~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgG~~qrv~ 152 (272)
T PRK15056 84 PQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFR-----------HRQIGELSGGQKKRVF 152 (272)
T ss_pred ccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHh-----------cCCcccCCHHHHHHHH
Confidence 999854 34579999875421 0 122344555555554432 2456789999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 730 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+++++ +|++++.|+++++..
T Consensus 153 laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 153 LARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTFT 230 (272)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhccC
Confidence 9999999999999999999999999999887665544568999999999998765 8999777 899999999998753
No 288
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-34 Score=329.39 Aligned_cols=204 Identities=27% Similarity=0.407 Sum_probs=171.4
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC---------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-----~~G~i~~~g--------- 658 (1354)
+.|+++|+++.|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|
T Consensus 15 ~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~ 91 (265)
T PRK14252 15 QKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91 (265)
T ss_pred ceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccc
Confidence 46999999999973 3699999999999999999999999999999999999875 799998754
Q ss_pred --------eEEEEeCCCCCCCCcHHHHHhcCCC---CC-----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCCh
Q 000680 659 --------SIAYVSQTSWIQSGSIRDNILYGKP---MD-----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1354)
Q Consensus 659 --------~i~yv~Q~~~~~~~ti~eni~~g~~---~~-----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSg 722 (1354)
.++|++|++.+++.|++||+.++.. .. +++..++++.+++.+++. +..++.+.+|||
T Consensus 92 ~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~ 164 (265)
T PRK14252 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFNLSG 164 (265)
T ss_pred cCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCcccCCH
Confidence 3899999999888899999987531 11 234455555565543332 223567789999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecC
Q 000680 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1354)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1354)
|||||++||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|+|||+++.+.. ||++++|++|++++.|+
T Consensus 165 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l-~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDL-KNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-HhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999987765543 346899999999999875 89999999999999999
Q ss_pred hHHHHh
Q 000680 802 YQELLL 807 (1354)
Q Consensus 802 ~~~l~~ 807 (1354)
.+++..
T Consensus 244 ~~~~~~ 249 (265)
T PRK14252 244 TDTIFI 249 (265)
T ss_pred HHHHHh
Confidence 988764
No 289
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=2.1e-34 Score=326.22 Aligned_cols=204 Identities=25% Similarity=0.394 Sum_probs=169.3
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC----CCcEEEEcC-----------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK----ISGTVNLYG----------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~----~~G~i~~~g----------- 658 (1354)
.++++|++++| . .++|+|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 79 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGR 79 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccc
Confidence 58899999999 2 3689999999999999999999999999999999999999 999998876
Q ss_pred eEEEEeCCCC-CC--CCcHHHHHhc-----CCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 659 SIAYVSQTSW-IQ--SGSIRDNILY-----GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 659 ~i~yv~Q~~~-~~--~~ti~eni~~-----g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
.++|++|++. .+ ..|+.+|+.+ +....++++.+.++.+++.+. .+.+++.+.+||||||||++|
T Consensus 80 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv~l 151 (254)
T PRK10418 80 KIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRMMI 151 (254)
T ss_pred eEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHHHH
Confidence 3999999984 23 3688888754 222233455666665555321 123456788999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
|||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. +|++++|++|++++.|+.+++.+.
T Consensus 152 aral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 231 (254)
T PRK10418 152 ALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNA 231 (254)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 9999999999999999999999999998876655433 47899999999999865 899999999999999999998765
Q ss_pred C
Q 000680 809 G 809 (1354)
Q Consensus 809 ~ 809 (1354)
.
T Consensus 232 ~ 232 (254)
T PRK10418 232 P 232 (254)
T ss_pred C
Confidence 3
No 290
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=333.42 Aligned_cols=206 Identities=28% Similarity=0.376 Sum_probs=168.2
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC--------
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG-------- 658 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~-----~~~G~i~~~g-------- 658 (1354)
+..++++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+++|.|+.+ |++|+|.++|
T Consensus 37 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~ 113 (286)
T PRK14275 37 KPHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT 113 (286)
T ss_pred ceEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhccc
Confidence 346899999999963 359999999999999999999999999999999999864 4999998865
Q ss_pred -------eEEEEeCCCCCCCCcHHHHHhcCCC---C-CHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChH
Q 000680 659 -------SIAYVSQTSWIQSGSIRDNILYGKP---M-DKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1354)
Q Consensus 659 -------~i~yv~Q~~~~~~~ti~eni~~g~~---~-~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgG 723 (1354)
.++|++|++.+++.|++||+.++.. . +.. +..++++..++...+. ....+++.+||||
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgG 186 (286)
T PRK14275 114 DEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS-------DRLDKNALGLSGG 186 (286)
T ss_pred chHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh-------hHhhCChhhCCHH
Confidence 3899999998887899999987632 1 111 2223334334321111 1224677899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecCh
Q 000680 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1354)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1354)
||||++||||++.+|+++||||||++||+.+.+.+.+.+.. ..+++|+|++||+++.+.. ||++++|++|++++.|+.
T Consensus 187 q~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~-~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~ 265 (286)
T PRK14275 187 QQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQE-LRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPT 265 (286)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH-HhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999998875544 3346899999999999876 899999999999999999
Q ss_pred HHHHhc
Q 000680 803 QELLLA 808 (1354)
Q Consensus 803 ~~l~~~ 808 (1354)
+++..+
T Consensus 266 ~~~~~~ 271 (286)
T PRK14275 266 AQLFTN 271 (286)
T ss_pred HHHHhC
Confidence 988654
No 291
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=9.9e-35 Score=338.78 Aligned_cols=210 Identities=19% Similarity=0.369 Sum_probs=170.1
Q ss_pred CCcEEEEeeEEEeCCC-CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEEcC---------
Q 000680 592 DRSVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYG--------- 658 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~-~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~---~G~i~~~g--------- 658 (1354)
+..++++|++++|... ....+++|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|
T Consensus 10 ~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred CceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 3468999999999643 2346899999999999999999999999999999999999986 99998876
Q ss_pred --------eEEEEeCCCC--C-CCCcHHHHHhcC----CCCCHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCC
Q 000680 659 --------SIAYVSQTSW--I-QSGSIRDNILYG----KPMDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1354)
Q Consensus 659 --------~i~yv~Q~~~--~-~~~ti~eni~~g----~~~~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~ 719 (1354)
.|+|++|+|. + +..|+.+|+... ...+.+ +..+.++..++ +++. ..++..+.+
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~~-~~~~~~p~~ 161 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEAR-KRMKMYPHE 161 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CChH-HHhcCCccc
Confidence 3999999983 3 457888887542 122222 22233333332 2221 234678899
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEE
Q 000680 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1354)
Q Consensus 720 LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1354)
|||||||||+||||++.+|+++|+||||++||+.+.+.+.+.+..... .|.|+|+||||++.+.. ||+|++|++|+|+
T Consensus 162 LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~iv 241 (330)
T PRK09473 162 FSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTM 241 (330)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999876655443 38899999999999875 8999999999999
Q ss_pred EecChHHHHhcC
Q 000680 798 QSGNYQELLLAG 809 (1354)
Q Consensus 798 ~~g~~~~l~~~~ 809 (1354)
+.|+.+++.++.
T Consensus 242 e~g~~~~i~~~p 253 (330)
T PRK09473 242 EYGNARDVFYQP 253 (330)
T ss_pred EECCHHHHHhCC
Confidence 999999998754
No 292
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-34 Score=329.00 Aligned_cols=199 Identities=26% Similarity=0.348 Sum_probs=167.2
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCC--------CcEEEEcC--------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI--------SGTVNLYG-------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~--------~G~i~~~g-------- 658 (1354)
++++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 678999999963 46999999999999999999999999999999999999998 99999977
Q ss_pred -----eEEEEeCCCC-CCCCcHHHHHhcCCC-C-------C---HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCC
Q 000680 659 -----SIAYVSQTSW-IQSGSIRDNILYGKP-M-------D---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1354)
Q Consensus 659 -----~i~yv~Q~~~-~~~~ti~eni~~g~~-~-------~---~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LS 721 (1354)
.++|++|++. ++..|++||+.++.. . . .++.+++++..++.. ..++++.+||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATA-----------LVGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHh-----------hhcCCcccCC
Confidence 2799999975 567899999987531 1 1 122344444444432 2346778999
Q ss_pred hHHHHHHHHHHHHh---------cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhhh-cCEEEE
Q 000680 722 GGQKQRIQLARAVY---------NDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILV 790 (1354)
Q Consensus 722 gGQkqRv~lARal~---------~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~ 790 (1354)
|||||||+||||++ .+|+++||||||++||+.+.+.+.+.+.....+ ++|+|++||+++.+.. ||++++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999 599999999999999999999998766554444 7999999999999875 899999
Q ss_pred EeCCeEEEecChHHHHh
Q 000680 791 LEGGQITQSGNYQELLL 807 (1354)
Q Consensus 791 l~~G~i~~~g~~~~l~~ 807 (1354)
|++|++++.|+.+++..
T Consensus 228 l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 228 LADGAIVAHGAPADVLT 244 (272)
T ss_pred EECCeEEEecCHHHHcC
Confidence 99999999999988754
No 293
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-34 Score=328.80 Aligned_cols=206 Identities=24% Similarity=0.361 Sum_probs=170.3
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC--------
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG-------- 658 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-----~~G~i~~~g-------- 658 (1354)
+..++++|+++.|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+.++ ++|+|.++|
T Consensus 18 ~~~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~ 94 (274)
T PRK14265 18 HSVFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQI 94 (274)
T ss_pred CceEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccc
Confidence 347999999999973 3699999999999999999999999999999999999863 689998765
Q ss_pred -------eEEEEeCCCCCCCCcHHHHHhcCCC---CC---HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -------SIAYVSQTSWIQSGSIRDNILYGKP---MD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -------~i~yv~Q~~~~~~~ti~eni~~g~~---~~---~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|++.+++.|++||+.++.. +. ++...+.++.+++...+.. ...+.+.+||||||
T Consensus 95 ~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~ 167 (274)
T PRK14265 95 NSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGGQQ 167 (274)
T ss_pred hhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHHHH
Confidence 4899999998887899999987632 11 1223344555555333321 23467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEe---------CCe
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLE---------GGQ 795 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~---------~G~ 795 (1354)
|||+||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|+ +|+
T Consensus 168 qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~ 246 (274)
T PRK14265 168 QRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLEL-KEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGK 246 (274)
T ss_pred HHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCce
Confidence 9999999999999999999999999999999988765544 356899999999999876 89999997 899
Q ss_pred EEEecChHHHHhc
Q 000680 796 ITQSGNYQELLLA 808 (1354)
Q Consensus 796 i~~~g~~~~l~~~ 808 (1354)
+++.|+.+++..+
T Consensus 247 ~~~~g~~~~~~~~ 259 (274)
T PRK14265 247 LVEFSPTEQMFGS 259 (274)
T ss_pred EEEeCCHHHHHhC
Confidence 9999999998654
No 294
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=330.77 Aligned_cols=205 Identities=24% Similarity=0.338 Sum_probs=170.1
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC---------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-----~~G~i~~~g--------- 658 (1354)
..++++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 20 ~~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 96 (276)
T PRK14271 20 PAMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV 96 (276)
T ss_pred cEEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchh
Confidence 35799999999973 4699999999999999999999999999999999999985 699998866
Q ss_pred -----eEEEEeCCCCCCCCcHHHHHhcCCC----CCHHHH----HHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -----SIAYVSQTSWIQSGSIRDNILYGKP----MDKARY----DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -----~i~yv~Q~~~~~~~ti~eni~~g~~----~~~~~~----~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|++.+++.|++||+.++.. ...+.+ .+.++.+++...+ .+.+++++.+||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LSgGq~ 169 (276)
T PRK14271 97 LEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV-------KDRLSDSPFRLSGGQQ 169 (276)
T ss_pred HHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhCCcccCCHHHH
Confidence 3899999998888999999987531 222222 2333444443211 1234567889999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
||++||||++.+|+++||||||++||+.+.+.+++.+.... +++|+|++||+++.+.. +|++++|++|++++.|+.++
T Consensus 170 qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~ 248 (276)
T PRK14271 170 QLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA-DRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQ 248 (276)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999887654433 45899999999999876 89999999999999999999
Q ss_pred HHhc
Q 000680 805 LLLA 808 (1354)
Q Consensus 805 l~~~ 808 (1354)
+.+.
T Consensus 249 ~~~~ 252 (276)
T PRK14271 249 LFSS 252 (276)
T ss_pred HHhC
Confidence 8754
No 295
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-34 Score=328.27 Aligned_cols=204 Identities=25% Similarity=0.408 Sum_probs=170.2
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-----~~G~i~~~g---------- 658 (1354)
.++++|+++.|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 7 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 7 AIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred eEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 6899999999963 3689999999999999999999999999999999999885 489998865
Q ss_pred -----eEEEEeCCCCCCCCcHHHHHhcCCC----CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -----SIAYVSQTSWIQSGSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -----~i~yv~Q~~~~~~~ti~eni~~g~~----~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|++.+++.|++||+.++.. .++ ++..++++.+++.+++.. ..+.++.+||||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence 3899999998888999999987521 121 233455555565433321 12467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEe-----CCeEEEe
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLE-----GGQITQS 799 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~-----~G~i~~~ 799 (1354)
||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++++.. ||++++|+ +|++++.
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSL-RSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 9999999999999999999999999999999988766544 346899999999999876 89999997 5999999
Q ss_pred cChHHHHhc
Q 000680 800 GNYQELLLA 808 (1354)
Q Consensus 800 g~~~~l~~~ 808 (1354)
|+.+++.+.
T Consensus 236 ~~~~~~~~~ 244 (259)
T PRK14260 236 GVTTQIFSN 244 (259)
T ss_pred CCHHHHhcC
Confidence 999998643
No 296
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=327.18 Aligned_cols=204 Identities=27% Similarity=0.412 Sum_probs=171.1
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~-----~~~G~i~~~g---------- 658 (1354)
.++++|+++.|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 4789999999963 469999999999999999999999999999999999864 4899998766
Q ss_pred -----eEEEEeCCCCCCCCcHHHHHhcCCC----CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -----SIAYVSQTSWIQSGSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -----~i~yv~Q~~~~~~~ti~eni~~g~~----~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|+||++++++.|++||+.++.. .++ +++.+.++.+++.+++..+ .++.+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-------LDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-------HhCCcccCCHHHH
Confidence 3899999999888899999987521 122 3445566666665544321 2466789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
||++||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++++.. +|++++|++|++++.|++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~-~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL-KEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQ 231 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHH
Confidence 9999999999999999999999999999999987765544 457899999999999877 79999999999999999999
Q ss_pred HHhc
Q 000680 805 LLLA 808 (1354)
Q Consensus 805 l~~~ 808 (1354)
+...
T Consensus 232 ~~~~ 235 (250)
T PRK14266 232 IFIN 235 (250)
T ss_pred HHhC
Confidence 8644
No 297
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-34 Score=326.87 Aligned_cols=205 Identities=25% Similarity=0.358 Sum_probs=173.4
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC---------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-----~~G~i~~~g--------- 658 (1354)
..+.+++.++.|.. .++++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 7 ~~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 83 (261)
T PRK14263 7 IVMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVD 83 (261)
T ss_pred ceEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccc
Confidence 46788889998863 4699999999999999999999999999999999999986 799998876
Q ss_pred ------eEEEEeCCCCCCCCcHHHHHhcCCC---CC---HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHH
Q 000680 659 ------SIAYVSQTSWIQSGSIRDNILYGKP---MD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1354)
Q Consensus 659 ------~i~yv~Q~~~~~~~ti~eni~~g~~---~~---~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkq 726 (1354)
.++|++|++.+++.|++||+.++.. +. .++..+.++..++..++.. ..++++.+|||||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~q 156 (261)
T PRK14263 84 PVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQ 156 (261)
T ss_pred hHhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHH
Confidence 2899999999888999999988642 11 2345566666666544432 234677899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEe--------CCeEE
Q 000680 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLE--------GGQIT 797 (1354)
Q Consensus 727 Rv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~--------~G~i~ 797 (1354)
|++||||++++|++++|||||++||+.+.+.+++.+... .+++|+|++||+++.+.. ||+|++|+ +|+++
T Consensus 157 rv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~-~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~ 235 (261)
T PRK14263 157 RLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVEL-KKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLV 235 (261)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEE
Confidence 999999999999999999999999999999988766554 457899999999998876 89999996 89999
Q ss_pred EecChHHHHhc
Q 000680 798 QSGNYQELLLA 808 (1354)
Q Consensus 798 ~~g~~~~l~~~ 808 (1354)
+.|+.+++.+.
T Consensus 236 ~~g~~~~~~~~ 246 (261)
T PRK14263 236 EMGPTAQIFQN 246 (261)
T ss_pred EeCCHHHHHhC
Confidence 99999998754
No 298
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-34 Score=333.90 Aligned_cols=205 Identities=28% Similarity=0.448 Sum_probs=169.9
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC---------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG--------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~-----~~~G~i~~~g--------- 658 (1354)
..+.++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 46899999999974 469999999999999999999999999999999999986 6899998865
Q ss_pred ------eEEEEeCCCCCCCCcHHHHHhcCCCC---------------C-----HHHHHHHHHHhccHHHHhcCCCCCccc
Q 000680 659 ------SIAYVSQTSWIQSGSIRDNILYGKPM---------------D-----KARYDKAIKACALDKDINNFDHGDLTE 712 (1354)
Q Consensus 659 ------~i~yv~Q~~~~~~~ti~eni~~g~~~---------------~-----~~~~~~~~~~~~l~~~l~~l~~gd~t~ 712 (1354)
.++|++|++.+++.|++||+.++... + .++..++++.+++..++. +.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVN-------DR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhh-------HH
Confidence 38999999988888999999976321 0 123344455555433332 23
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEE-EE
Q 000680 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRI-LV 790 (1354)
Q Consensus 713 ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i-~~ 790 (1354)
.++++.+|||||||||+||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++ ++
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~-~~~~tiiivtH~~~~i~~~~d~i~~~ 272 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEEL-AEEYTVVVVTHNMQQAARISDQTAVF 272 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCEEEEEEcCHHHHHHhcCEEEEE
Confidence 45778899999999999999999999999999999999999999987765544 345899999999999876 8997 56
Q ss_pred EeCCeEEEecChHHHHhc
Q 000680 791 LEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 791 l~~G~i~~~g~~~~l~~~ 808 (1354)
|++|++++.|+++++.+.
T Consensus 273 l~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 273 LTGGELVEYDDTDKIFEN 290 (305)
T ss_pred ecCCEEEEeCCHHHHHhC
Confidence 799999999999988643
No 299
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-34 Score=327.45 Aligned_cols=204 Identities=25% Similarity=0.394 Sum_probs=166.9
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-----~~G~i~~~g---------- 658 (1354)
.++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 5889999999963 3699999999999999999999999999999999999874 799998865
Q ss_pred -----eEEEEeCCCCCCC-CcHHHHHhcCCC----CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHH
Q 000680 659 -----SIAYVSQTSWIQS-GSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1354)
Q Consensus 659 -----~i~yv~Q~~~~~~-~ti~eni~~g~~----~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQ 724 (1354)
.++|++|++.++. .|++||+.++.. ... ++..++++..++...+. ......+.+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK-------DRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHH
Confidence 3899999987765 699999986421 111 22334444444432211 12346678999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEe------CCeEE
Q 000680 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLE------GGQIT 797 (1354)
Q Consensus 725 kqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~------~G~i~ 797 (1354)
|||++||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++++.. ||+|++|+ +|+|+
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~ 232 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL-KQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLV 232 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEE
Confidence 99999999999999999999999999999999987655444 456899999999999865 89999997 89999
Q ss_pred EecChHHHHhc
Q 000680 798 QSGNYQELLLA 808 (1354)
Q Consensus 798 ~~g~~~~l~~~ 808 (1354)
+.|+++++...
T Consensus 233 ~~~~~~~~~~~ 243 (258)
T PRK14241 233 EIDDTEKIFSN 243 (258)
T ss_pred ecCCHHHHHhC
Confidence 99999998653
No 300
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1.6e-34 Score=321.48 Aligned_cols=200 Identities=30% Similarity=0.421 Sum_probs=158.6
Q ss_pred cEEEEeeEEEeCCCC-CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc---CCCcEEEEcC----------e
Q 000680 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---KISGTVNLYG----------S 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~---~~~G~i~~~g----------~ 659 (1354)
.+.++|++|.++... .+++++|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++| .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 356899999997542 3679999999999999999999999999999999999999 9999999877 3
Q ss_pred EEEEeCCCCCCCC-cHHHHHhcCCCC------CHHHHHHHHHHhccHHHHhcCCCCCccc-ccCCCCCCChHHHHHHHHH
Q 000680 660 IAYVSQTSWIQSG-SIRDNILYGKPM------DKARYDKAIKACALDKDINNFDHGDLTE-IGQRGLNLSGGQKQRIQLA 731 (1354)
Q Consensus 660 i~yv~Q~~~~~~~-ti~eni~~g~~~------~~~~~~~~~~~~~l~~~l~~l~~gd~t~-ig~~g~~LSgGQkqRv~lA 731 (1354)
++|++|++.+++. |++||+.++... .++...+..+.. .++. .+.+. ..+...+||||||||++||
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~----~l~~---~~l~~~~~~~~~~LS~G~~qrl~la 155 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDV----LLRD---LALTRIGGNLVKGISGGERRRVSIA 155 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHH----HHHh---hcchhhhcccccCcCHHHHHHHHHH
Confidence 9999999987664 999999875211 111110011100 1111 12222 2356689999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCc-chhh-hcCEEEEEeCCeEEEec
Q 000680 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV-EFLS-EVDRILVLEGGQITQSG 800 (1354)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~-~~l~-~~d~i~~l~~G~i~~~g 800 (1354)
||++++|+++||||||++||+.+.+++.+.+.....+++|+|++||++ +.+. .+|++++|++|++++.|
T Consensus 156 ral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 156 VQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999998876655444688999999998 4655 58999999999998765
No 301
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-34 Score=326.99 Aligned_cols=205 Identities=25% Similarity=0.408 Sum_probs=170.1
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCC-----CcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-----SGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~-----~G~i~~~g---------- 658 (1354)
.++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.+|+ +|+|.++|
T Consensus 7 ~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 7 AIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred eEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 6899999999963 35899999999999999999999999999999999999985 79887654
Q ss_pred -----eEEEEeCCCCCCCCcHHHHHhcCCC---C-C----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -----~i~yv~Q~~~~~~~ti~eni~~g~~---~-~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|++.+++.|++||+.++.. . . .++..++++..++...+.. ..++.+.+||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 156 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQQ 156 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence 3899999988877999999986421 1 1 1223445555554332221 23467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeC-----CeEEE
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEG-----GQITQ 798 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~-----G~i~~ 798 (1354)
||++||||++++|+++||||||++||+.+.+.+.+.+..... +++|+|++||+++.+.. ||+|++|++ |++++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 999999999999999999999999999999998876655433 48999999999999876 899999999 99999
Q ss_pred ecChHHHHhc
Q 000680 799 SGNYQELLLA 808 (1354)
Q Consensus 799 ~g~~~~l~~~ 808 (1354)
.|+++++.+.
T Consensus 237 ~~~~~~~~~~ 246 (261)
T PRK14258 237 FGLTKKIFNS 246 (261)
T ss_pred eCCHHHHHhC
Confidence 9999998754
No 302
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-34 Score=325.64 Aligned_cols=204 Identities=26% Similarity=0.378 Sum_probs=165.5
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCC-----CcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-----SGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~-----~G~i~~~g---------- 658 (1354)
.++++|++++|+. +++++|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 4788999999963 46999999999999999999999999999999999999874 89998865
Q ss_pred -----eEEEEeCCCCCCC-CcHHHHHhcCCC---C-CHHH----HHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHH
Q 000680 659 -----SIAYVSQTSWIQS-GSIRDNILYGKP---M-DKAR----YDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1354)
Q Consensus 659 -----~i~yv~Q~~~~~~-~ti~eni~~g~~---~-~~~~----~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQ 724 (1354)
.++|++|++.++. .|++||+.++.. . .++. ..+.++..++...+. .....++.+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~ 153 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVK-------DRLKTPATGLSGGQ 153 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhh-------hhhcCCcccCCHHH
Confidence 3899999998766 699999986431 1 2221 222222333322111 11235678999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChH
Q 000680 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1354)
Q Consensus 725 kqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1354)
|||++||||++++|++++|||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDL-KKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTD 232 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999988755443 457999999999999886 8999999999999999999
Q ss_pred HHHhc
Q 000680 804 ELLLA 808 (1354)
Q Consensus 804 ~l~~~ 808 (1354)
++...
T Consensus 233 ~~~~~ 237 (252)
T PRK14272 233 QLFTN 237 (252)
T ss_pred HHHhC
Confidence 98654
No 303
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=2.2e-34 Score=339.98 Aligned_cols=195 Identities=25% Similarity=0.408 Sum_probs=164.2
Q ss_pred eeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------eEE
Q 000680 599 EGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIA 661 (1354)
Q Consensus 599 ~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------------~i~ 661 (1354)
|++++|+. . .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++
T Consensus 4 ~l~~~~~~---~-~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---F-SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---E-EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 67888863 2 35 99999999999999999999999999999999999999998765 289
Q ss_pred EEeCCCCCCC-CcHHHHHhcCCCC-C----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh
Q 000680 662 YVSQTSWIQS-GSIRDNILYGKPM-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 662 yv~Q~~~~~~-~ti~eni~~g~~~-~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1354)
|++|++.++. .|++||+.|+... . +++.++.++..++.+.+ ..++.+||||||||++||||++
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLL-----------GRLPGRLSGGEKQRVAIGRALL 147 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHHH
Confidence 9999998764 6999999986431 1 12345555555554332 3567799999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhcC
Q 000680 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
.+|+++||||||++||+...+.+.+.+.....+ |+|+|++||+++.+.. +|++++|++|++++.|+++++....
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 999999999999999999999998876655444 7899999999999876 8999999999999999999987654
No 304
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=2.5e-34 Score=327.67 Aligned_cols=207 Identities=25% Similarity=0.372 Sum_probs=168.6
Q ss_pred cEEEEeeEEEeCCC------CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------
Q 000680 594 SVKIQEGNFSWDPE------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~------~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------- 658 (1354)
.++++|+++.|+.. .++++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 37899999999731 135799999999999999999999999999999999999999999998876
Q ss_pred -------eEEEEeCCCC--C-CCCcHHHHHhcCC----CCCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCC
Q 000680 659 -------SIAYVSQTSW--I-QSGSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1354)
Q Consensus 659 -------~i~yv~Q~~~--~-~~~ti~eni~~g~----~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~L 720 (1354)
.++|++|++. + .+.|++||+.+.. ..+. ++.++.++.+++..+ ..+.++.+|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~L 152 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDS----------VLDKRPPQL 152 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChh----------HhhCCCccC
Confidence 3899999983 3 4579999986531 1121 233444444444321 123567899
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEE
Q 000680 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1354)
Q Consensus 721 SgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1354)
|||||||++||||++++|+++||||||++||+.+.+.+.+.+..... .++|+|++||+++.+.. ||++++|++|++++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999999998876554443 37899999999999986 89999999999999
Q ss_pred ecChHHHHhcCc
Q 000680 799 SGNYQELLLAGT 810 (1354)
Q Consensus 799 ~g~~~~l~~~~~ 810 (1354)
.|+.+++.....
T Consensus 233 ~g~~~~~~~~~~ 244 (268)
T PRK10419 233 TQPVGDKLTFSS 244 (268)
T ss_pred eCChhhccCCCC
Confidence 999999875433
No 305
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-34 Score=324.66 Aligned_cols=204 Identities=27% Similarity=0.429 Sum_probs=166.4
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc--C---CCcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--K---ISGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~--~---~~G~i~~~g---------- 658 (1354)
.++++|+++.|+. +++|+|+||++++||+++|+|+||||||||+++|+|+.+ | ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 5889999999973 469999999999999999999999999999999999865 4 589998865
Q ss_pred -----eEEEEeCCCCCCCCcHHHHHhcCCC---C-CH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -----~i~yv~Q~~~~~~~ti~eni~~g~~---~-~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|++.+++.|++||+.++.. . .+ ++..+.++.+++...+. ......+.+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK-------DHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchh-------hHHhcCcccCCHHHH
Confidence 3899999998887899999986521 1 11 12233334443322111 123467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
||++||||++.+|+++||||||++||+++.+.+.+.+... .+++|+|++||+++.+.. ||+|++|++|++++.|+..+
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLEL-RDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQ 233 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-HhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999987765544 345899999999999876 89999999999999999888
Q ss_pred HHhc
Q 000680 805 LLLA 808 (1354)
Q Consensus 805 l~~~ 808 (1354)
...+
T Consensus 234 ~~~~ 237 (252)
T PRK14255 234 MFLN 237 (252)
T ss_pred HhcC
Confidence 7654
No 306
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-34 Score=317.13 Aligned_cols=185 Identities=30% Similarity=0.424 Sum_probs=155.1
Q ss_pred eeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------eEE
Q 000680 599 EGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIA 661 (1354)
Q Consensus 599 ~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------------~i~ 661 (1354)
|++++|+.. .+ |+||++++ |+++|+||||||||||+++|+|+++|++|+|.++| .++
T Consensus 5 ~l~~~~~~~---~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 78 (214)
T cd03297 5 DIEKRLPDF---TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIG 78 (214)
T ss_pred eeeEecCCe---ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEE
Confidence 788888742 23 99999999 99999999999999999999999999999998865 389
Q ss_pred EEeCCCCCC-CCcHHHHHhcCCCC-C----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh
Q 000680 662 YVSQTSWIQ-SGSIRDNILYGKPM-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 662 yv~Q~~~~~-~~ti~eni~~g~~~-~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1354)
|++|++.++ +.|++||+.++... . +++..+.++..++.... ..++.+||||||||++||||++
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~ 147 (214)
T cd03297 79 LVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLL-----------NRYPAQLSGGEKQRVALARALA 147 (214)
T ss_pred EEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHh-----------hcCcccCCHHHHHHHHHHHHHh
Confidence 999999876 56999999875321 1 23344555555554322 3567899999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
++|++++|||||++||+.+.+.+++.+.....+ |+|+|++||+++.+.. +|++++|++|++++.|
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 148 AQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999988766554443 8899999999999865 8999999999998765
No 307
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=3e-34 Score=317.99 Aligned_cols=191 Identities=27% Similarity=0.412 Sum_probs=160.5
Q ss_pred EEEEeeEEEeCCCC-CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000680 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------- 658 (1354)
++++|+++.|++.. ..++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 68899999996432 25699999999999999999999999999999999999999999998875
Q ss_pred -eEEEEeCCCCCCC-CcHHHHHhcCCC----CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 000680 659 -SIAYVSQTSWIQS-GSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1354)
Q Consensus 659 -~i~yv~Q~~~~~~-~ti~eni~~g~~----~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1354)
.++|++|++.++. .|+.||+.++.. .+. +++.++++.+++.+.++ ..+.+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLD-----------YYPHNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHH
Confidence 3899999997765 799999987532 222 24455666666654443 45568999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhhcCEEEEEeCCeE
Q 000680 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1354)
Q Consensus 729 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i 796 (1354)
+||||++.+|+++|||||+++||+.+.+.+.+.+..... +++|+|++||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999998876554443 48999999999997767999999999986
No 308
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=3.3e-34 Score=310.86 Aligned_cols=174 Identities=26% Similarity=0.428 Sum_probs=151.3
Q ss_pred cEEEEeeEEEeCCC---CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCc--cCCCcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPE---LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~---~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~--~~~~G~i~~~g---------- 658 (1354)
.++++|++|.|+.. ...++++|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++|
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 47899999999742 1256999999999999999999999999999999999999 99999998876
Q ss_pred eEEEEeCCCCCCC-CcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcC
Q 000680 659 SIAYVSQTSWIQS-GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1354)
Q Consensus 659 ~i~yv~Q~~~~~~-~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~ 737 (1354)
.++|++|++.++. .|++||+.++... . .||||||||++||||++.+
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~~~------------------~---------------~LS~G~~qrv~laral~~~ 129 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAAKL------------------R---------------GLSGGERKRVSIALELVSN 129 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHHHh------------------c---------------cCCHHHHHHHHHHHHHHcC
Confidence 4899999987764 6999999753210 0 7999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcc-hhhh-cCEEEEEeCCeEEEec
Q 000680 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVE-FLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 738 ~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~-~l~~-~d~i~~l~~G~i~~~g 800 (1354)
|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++ .+.. +|++++|++|++++.|
T Consensus 130 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 130 PSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 9999999999999999999988766554446899999999997 5654 8999999999998754
No 309
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-34 Score=295.69 Aligned_cols=204 Identities=28% Similarity=0.420 Sum_probs=169.9
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~ 661 (1354)
|+.+|.+++-. .+.+|++++|++++||+++|+||||+||||||++|.||+.|++|++.++| .-|
T Consensus 2 i~a~nls~~~~---Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLA---GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEee---cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 56778887765 35699999999999999999999999999999999999999999999988 368
Q ss_pred EEeCCCCC-CCCcHHHHHhcCCC-C----CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh
Q 000680 662 YVSQTSWI-QSGSIRDNILYGKP-M----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 662 yv~Q~~~~-~~~ti~eni~~g~~-~----~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1354)
.+||+..+ |.-||+|-+.+|.- . +.++-.++.++|-...|+..+.. +...+|||||||||.|||.|.
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~-------R~y~~LSGGEqQRVqlARvLa 151 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAG-------RDYRTLSGGEQQRVQLARVLA 151 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhc-------cchhhcCchHHHHHHHHHHHH
Confidence 99999766 89999999999852 2 11222333333333344444443 345679999999999999999
Q ss_pred c------CCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 736 N------DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 736 ~------~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
+ ++++++||||||+||.....++++.......+|..|+.|-||++.... ||+|++|++||++..|++++.+..
T Consensus 152 Ql~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~ 231 (259)
T COG4559 152 QLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTD 231 (259)
T ss_pred HccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCH
Confidence 6 456999999999999999999998777777788999999999999765 999999999999999999998854
No 310
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.4e-34 Score=304.36 Aligned_cols=159 Identities=28% Similarity=0.500 Sum_probs=144.4
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~i~y 662 (1354)
++++|+++.|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEE
Confidence 468899999963 3699999999999999999999999999999999999999999998876 3899
Q ss_pred EeCCCCCCC-CcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEE
Q 000680 663 VSQTSWIQS-GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741 (1354)
Q Consensus 663 v~Q~~~~~~-~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~il 741 (1354)
++|++.++. .|++||+. ||||||||++||||++.+|+++
T Consensus 78 ~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 78 LPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred EecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 999998765 59999974 9999999999999999999999
Q ss_pred EEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeE
Q 000680 742 LFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1354)
Q Consensus 742 lLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1354)
||||||++||+.+.+.+.+.+.....+|.|+|++||+.+++.. ||++++|++|++
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999988766555568899999999999885 899999999974
No 311
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=6.3e-34 Score=322.49 Aligned_cols=205 Identities=23% Similarity=0.282 Sum_probs=164.7
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------- 658 (1354)
.++++|+++.|+. .++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 5889999999963 3589999999999999999999999999999999999999999998864
Q ss_pred -------eEEEEeCCCC--C-CCCcHHHHHhcC-----CCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChH
Q 000680 659 -------SIAYVSQTSW--I-QSGSIRDNILYG-----KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1354)
Q Consensus 659 -------~i~yv~Q~~~--~-~~~ti~eni~~g-----~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgG 723 (1354)
.++|++|++. + +..|+.+|+.+. .....+... ...+.++.++.+ .+..+..+.+||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------~~~~~l~~l~l~-~~~~~~~~~~LSgG 152 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRA------AAHDWLEEVEID-PTRIDDLPRAFSGG 152 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHH------HHHHHHHHcCCC-hhhhhcCchhcCHH
Confidence 2799999974 2 345889998542 110111111 112233333321 12345678899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecC
Q 000680 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1354)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1354)
||||++||||++++|+++||||||++||+.+.+.+.+.+..... .|.|+|+|||+++.+.. +|++++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~ 232 (253)
T TIGR02323 153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGL 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999998876655443 48999999999999885 89999999999999999
Q ss_pred hHHHHhc
Q 000680 802 YQELLLA 808 (1354)
Q Consensus 802 ~~~l~~~ 808 (1354)
.+++..+
T Consensus 233 ~~~~~~~ 239 (253)
T TIGR02323 233 TDQVLDD 239 (253)
T ss_pred HHHHhcC
Confidence 9888643
No 312
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=9.3e-34 Score=337.37 Aligned_cols=205 Identities=22% Similarity=0.248 Sum_probs=171.4
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCCCC-CC
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWI-QS 671 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~i~yv~Q~~~~-~~ 671 (1354)
..++++|++|.|+....+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.-.++++.+.+ ..
T Consensus 20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~ 99 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQ 99 (549)
T ss_pred ceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCC
Confidence 45889999999976544579999999999999999999999999999999999999999999999976666666544 45
Q ss_pred CcHHHHHhcCC---CCCHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEe
Q 000680 672 GSIRDNILYGK---PMDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744 (1354)
Q Consensus 672 ~ti~eni~~g~---~~~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLD 744 (1354)
.|++||+.++. ..+.+ +..++++.+++.+.++ .++.+||||||||++||||++.+|+++|||
T Consensus 100 lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld-----------~~~~~LSGGQrQRVaLArAL~~~P~LLLLD 168 (549)
T PRK13545 100 LTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIY-----------QPVKTYSSGMKSRLGFAISVHINPDILVID 168 (549)
T ss_pred CcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhh-----------CCcccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 69999998642 12222 2334555555554333 456789999999999999999999999999
Q ss_pred CCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 745 DPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 745 ep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
|||++||+...+.+++.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 169 EPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 169 EALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 9999999999999887665544568999999999999876 899999999999999999998764
No 313
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.7e-34 Score=286.40 Aligned_cols=194 Identities=27% Similarity=0.405 Sum_probs=165.6
Q ss_pred cEEEEeeEEEeCCC-CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000680 594 SVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~-~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------- 658 (1354)
.|++++++.+-+.. ...++|++++|.|++||.++||||+||||||||..++|+.+|++|+|.+.|
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 46666766665433 245689999999999999999999999999999999999999999999876
Q ss_pred ---eEEEEeCCCC-CCCCcHHHHHhcCCCCC-------HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 000680 659 ---SIAYVSQTSW-IQSGSIRDNILYGKPMD-------KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1354)
Q Consensus 659 ---~i~yv~Q~~~-~~~~ti~eni~~g~~~~-------~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1354)
+||+|+|... ++|+|..||+....+.. .+...+.+++.+|.+-+. ..+.+||||++||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~-----------HyP~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLT-----------HYPAQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccc-----------cCccccCchHHHH
Confidence 5999999875 68999999998754322 234556677777766554 4456899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEcCCcchhhhcCEEEEEeCCeEEE
Q 000680 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRILVLEGGQITQ 798 (1354)
Q Consensus 728 v~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~ 798 (1354)
|+||||+...|+|++-||||-+||..++++|.+.++... ..|.|.|+||||.....+|||++-|++|++++
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 999999999999999999999999999999998887654 46899999999999999999999999999975
No 314
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6e-34 Score=310.89 Aligned_cols=180 Identities=22% Similarity=0.308 Sum_probs=151.3
Q ss_pred cEEEEeeEEEeCCC-CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc---CCCcEEEEcC-----------
Q 000680 594 SVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---KISGTVNLYG----------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~-~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~---~~~G~i~~~g----------- 658 (1354)
.+.++|++|.|+.. .++++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 36789999999864 34579999999999999999999999999999999999999 8999998876
Q ss_pred -eEEEEeCCCCCCC-CcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhc
Q 000680 659 -SIAYVSQTSWIQS-GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN 736 (1354)
Q Consensus 659 -~i~yv~Q~~~~~~-~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~ 736 (1354)
.++|++|++.++. .|++||+.++.... ..++...||||||||++||||+++
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---------------------------~~~~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRCK---------------------------GNEFVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhhc---------------------------cccchhhCCHHHHHHHHHHHHHhh
Confidence 3899999987664 69999998753110 124567899999999999999999
Q ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcC-Ccchhh-hcCEEEEEeCCeEEEec
Q 000680 737 DADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTH-QVEFLS-EVDRILVLEGGQITQSG 800 (1354)
Q Consensus 737 ~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH-~~~~l~-~~d~i~~l~~G~i~~~g 800 (1354)
+|+++||||||++||+.+.+.+.+.+.....+ +.|+|+++| +.+.+. .||++++|++|++++.|
T Consensus 136 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 136 RASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999988766554433 567666655 556665 48999999999998754
No 315
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=5.2e-34 Score=318.25 Aligned_cols=189 Identities=24% Similarity=0.378 Sum_probs=156.0
Q ss_pred cceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC----CCcEEEEcC-----------eEEEEeCCCC--C-CCCc
Q 000680 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK----ISGTVNLYG-----------SIAYVSQTSW--I-QSGS 673 (1354)
Q Consensus 612 ~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~----~~G~i~~~g-----------~i~yv~Q~~~--~-~~~t 673 (1354)
+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++| .++|++|++. + ...|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 47899999999999999999999999999999999999 899999876 4999999984 3 2469
Q ss_pred HHHHHhcCCC----CC---HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCC
Q 000680 674 IRDNILYGKP----MD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1354)
Q Consensus 674 i~eni~~g~~----~~---~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep 746 (1354)
++||+.+... .. .+++.+.++.+++.+ + .+..++.+.+|||||||||+||||++++|+++|||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------P-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------h-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999865321 11 223445555555531 1 0123467789999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 747 FSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 747 ~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
|++||+.+.+.+.+.+..... .++|+|++||+++.+.. +|++++|++|++.+.|+++++...
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 216 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999998876655444 37899999999999875 899999999999999999998754
No 316
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-34 Score=290.84 Aligned_cols=195 Identities=27% Similarity=0.391 Sum_probs=159.7
Q ss_pred EEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe--------EEEEeCCC
Q 000680 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------IAYVSQTS 667 (1354)
Q Consensus 596 ~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~--------i~yv~Q~~ 667 (1354)
.+++.+.+|+..+ .++|+|+|++|.+||.++++||+||||||||+.++|+++|..|+|.++|+ -|.|+|++
T Consensus 5 ~~~~~sl~y~g~~-~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~ 83 (259)
T COG4525 5 NVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNE 83 (259)
T ss_pred ehhheEEecCCcc-hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccC
Confidence 4567788887653 67999999999999999999999999999999999999999999999874 69999997
Q ss_pred CC-CCCcHHHHHhcCCC---CCHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 000680 668 WI-QSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1354)
Q Consensus 668 ~~-~~~ti~eni~~g~~---~~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ 739 (1354)
-+ +-.++.||+.||.. .++. ...+.+...+|++. + .+...+||||||||+.|||||..+|+
T Consensus 84 ~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~-------~----~~~i~qLSGGmrQRvGiARALa~eP~ 152 (259)
T COG4525 84 ALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGA-------E----HKYIWQLSGGMRQRVGIARALAVEPQ 152 (259)
T ss_pred ccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccc-------c----ccceEeecchHHHHHHHHHHhhcCcc
Confidence 54 56899999999864 2332 22233333333221 1 25667899999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEcCCcchhh-hcCEEEEEe--CCeEEEecCh
Q 000680 740 IYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLE--GGQITQSGNY 802 (1354)
Q Consensus 740 illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~-~~d~i~~l~--~G~i~~~g~~ 802 (1354)
.++||||++|||+-+++++-+.++..+ ..||.+++|||++++.- -+++++||. .|+|++.-++
T Consensus 153 ~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 153 LLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred eEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence 999999999999999999876666654 46999999999999865 489999997 6899976443
No 317
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=4.5e-34 Score=318.47 Aligned_cols=182 Identities=35% Similarity=0.459 Sum_probs=152.3
Q ss_pred ceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe--------EEEEeCCCCCCC-CcHHHHHhcCC-
Q 000680 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------IAYVSQTSWIQS-GSIRDNILYGK- 682 (1354)
Q Consensus 613 l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~--------i~yv~Q~~~~~~-~ti~eni~~g~- 682 (1354)
|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. .+|++|++.++. .|++||+.++.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999873 589999987765 79999998641
Q ss_pred ----CCCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHH
Q 000680 683 ----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754 (1354)
Q Consensus 683 ----~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~ 754 (1354)
..++ ++..+.++.+++.+.++ .++.+||||||||++||||++++|+++||||||++||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~ 149 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAAD-----------KRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALT 149 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHHHc-----------CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHH
Confidence 1222 23445556556554332 4567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHH
Q 000680 755 AATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 755 ~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1354)
.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++++.|+..++
T Consensus 150 ~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 150 RGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 9998876655444 47899999999998876 899999999999988765443
No 318
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.2e-34 Score=308.38 Aligned_cols=174 Identities=22% Similarity=0.335 Sum_probs=150.6
Q ss_pred cEEEEeeEEEeCCCC-CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCc--cCCCcEEEEcC---------eEE
Q 000680 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLYG---------SIA 661 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~--~~~~G~i~~~g---------~i~ 661 (1354)
.++++|+++.|++.. ++++++|+||++++||+++|+||||||||||+++|+|.. +|++|+|.++| .++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 478999999997421 246999999999999999999999999999999999986 48999999876 489
Q ss_pred EEeCCCCCCC-CcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000680 662 YVSQTSWIQS-GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1354)
Q Consensus 662 yv~Q~~~~~~-~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1354)
|++|++.++. .|++||+.++.. ++ +||||||||++||||++.+|++
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~~---------~~------------------------~LSgGe~qrv~la~al~~~p~v 129 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFSAL---------LR------------------------GLSVEQRKRLTIGVELAAKPSI 129 (192)
T ss_pred EecccCccccCCcHHHHHHHHHH---------Hh------------------------cCCHHHhHHHHHHHHHhcCCcE
Confidence 9999987655 699999986420 00 7999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcch-h-hhcCEEEEEeC-CeEEEec
Q 000680 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF-L-SEVDRILVLEG-GQITQSG 800 (1354)
Q Consensus 741 llLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~-l-~~~d~i~~l~~-G~i~~~g 800 (1354)
++|||||++||+.+.+++++.+.....+++|+|++||+++. + ..+|++++|++ |++++.|
T Consensus 130 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 130 LFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999988665544468999999999984 4 45899999999 9998765
No 319
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-33 Score=319.52 Aligned_cols=206 Identities=22% Similarity=0.344 Sum_probs=167.2
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------- 658 (1354)
.+.+.++|++++|+. +++++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|
T Consensus 8 ~~~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~ 84 (257)
T PRK14246 8 EDVFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84 (257)
T ss_pred hhheeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCC
Confidence 346899999999963 4689999999999999999999999999999999999999997765543
Q ss_pred ------eEEEEeCCCCCCC-CcHHHHHhcCCC---C-CHHH----HHHHHHHhccHHHHhcCCCCCcccccCCCCCCChH
Q 000680 659 ------SIAYVSQTSWIQS-GSIRDNILYGKP---M-DKAR----YDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1354)
Q Consensus 659 ------~i~yv~Q~~~~~~-~ti~eni~~g~~---~-~~~~----~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgG 723 (1354)
.++|++|+|.++. .|++||+.++.. . .++. ..+.++..++.+.+ ....++.+..||||
T Consensus 85 ~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G 157 (257)
T PRK14246 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGG 157 (257)
T ss_pred HHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHH
Confidence 3899999998775 599999987521 1 2222 22333333332211 01234677899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecCh
Q 000680 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1354)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1354)
||||++||||++++|++++|||||++||+.+.+.+.+.+... .+++|+|+|||+++++.. ||++++|++|++++.|+.
T Consensus 158 ~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~ 236 (257)
T PRK14246 158 QQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITEL-KNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSS 236 (257)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999987755443 456899999999999865 899999999999999999
Q ss_pred HHHHhc
Q 000680 803 QELLLA 808 (1354)
Q Consensus 803 ~~l~~~ 808 (1354)
+++.+.
T Consensus 237 ~~~~~~ 242 (257)
T PRK14246 237 NEIFTS 242 (257)
T ss_pred HHHHhC
Confidence 988754
No 320
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.3e-33 Score=334.66 Aligned_cols=214 Identities=21% Similarity=0.361 Sum_probs=177.8
Q ss_pred CCcEEEEeeEEEeCCC--------CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----
Q 000680 592 DRSVKIQEGNFSWDPE--------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----- 658 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~--------~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g----- 658 (1354)
+..++++|++..|... ....+++||||++++||+++|||++|||||||.++|+|+.+|++|+|.++|
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~ 357 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDL 357 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccc
Confidence 3457799999999852 234689999999999999999999999999999999999999999999876
Q ss_pred ----------eEEEEeCCCCC---CCCcHHHHHhcCC----CCC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCC
Q 000680 659 ----------SIAYVSQTSWI---QSGSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRG 717 (1354)
Q Consensus 659 ----------~i~yv~Q~~~~---~~~ti~eni~~g~----~~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g 717 (1354)
++-+++|+|.- +..||+++|.-.. ... +++..+.++..+|.+++ ...++
T Consensus 358 ~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~----------l~ryP 427 (539)
T COG1123 358 TGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEF----------LDRYP 427 (539)
T ss_pred ccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHH----------HhcCc
Confidence 48899999852 5689999987432 111 23445556666766532 34778
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCe
Q 000680 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1354)
Q Consensus 718 ~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1354)
.+|||||||||+|||||..+|+++++|||+|+||+-+..++.+.+.+... -|-|.|+||||+.++.+ ||||+||++|+
T Consensus 428 ~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~ 507 (539)
T COG1123 428 HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGR 507 (539)
T ss_pred hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCe
Confidence 89999999999999999999999999999999999999999887665543 38899999999999988 89999999999
Q ss_pred EEEecChHHHHhcC-chHHHH
Q 000680 796 ITQSGNYQELLLAG-TAFEQL 815 (1354)
Q Consensus 796 i~~~g~~~~l~~~~-~~~~~~ 815 (1354)
|++.|+.+++.+.. ..|.+.
T Consensus 508 iVE~G~~~~v~~~p~h~Ytr~ 528 (539)
T COG1123 508 IVEEGPTEKVFENPQHPYTRK 528 (539)
T ss_pred EEEeCCHHHHhcCCCChHHHH
Confidence 99999999988764 344433
No 321
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=7.2e-34 Score=305.26 Aligned_cols=160 Identities=29% Similarity=0.488 Sum_probs=144.4
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~ 659 (1354)
.++++|++++| +++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 48899999987 79999999999999999999999999999999999999999999876 4
Q ss_pred EEEEeCCC----CCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh
Q 000680 660 IAYVSQTS----WIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 660 i~yv~Q~~----~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1354)
++|++|++ ..++.|++||+.++.. ||||||||++||||++
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~ 120 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLA 120 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHc
Confidence 89999985 3456899999987421 9999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeE
Q 000680 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1354)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1354)
.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++
T Consensus 121 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 121 RDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999887665544468999999999998877 899999999975
No 322
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=6.2e-34 Score=312.47 Aligned_cols=181 Identities=28% Similarity=0.409 Sum_probs=151.1
Q ss_pred EEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------e
Q 000680 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------S 659 (1354)
Q Consensus 597 ~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------------~ 659 (1354)
++|+++.|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4688999963 4699999999999999999999999999999999999999999998765 3
Q ss_pred EEEEeCCCCCCC-CcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000680 660 IAYVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1354)
Q Consensus 660 i~yv~Q~~~~~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1354)
++|++|++.++. .|++||+.++.. .. .++..+.++..++.+.. +.+..+||||||||++||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lS~G~~qr~~la 146 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKL-----------KQKIYELSGGEQQRVALA 146 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhh-----------cCChhhCCHHHHHHHHHH
Confidence 899999998765 799999987432 11 23344555555554332 355678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEE
Q 000680 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVL 791 (1354)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l 791 (1354)
||++++|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+..||++++|
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 147 RAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 999999999999999999999999998876655444589999999999987779999875
No 323
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-34 Score=287.30 Aligned_cols=204 Identities=24% Similarity=0.382 Sum_probs=172.7
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------- 658 (1354)
.+++++|....|.. ..+|++||++.++|+.+.|+|.+||||||+|+||.=+..|..|.|.++|
T Consensus 5 ~~l~v~dlHK~~G~---~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~ 81 (256)
T COG4598 5 NALEVEDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLK 81 (256)
T ss_pred cceehhHHHhhccc---chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCee
Confidence 46788888888875 3599999999999999999999999999999999999999999999876
Q ss_pred ------------eEEEEeCCCCCC-CCcHHHHHhcC------CCCC--HHHHHHHHHHhccHHHHhcCCCCCcccccCCC
Q 000680 659 ------------SIAYVSQTSWIQ-SGSIRDNILYG------KPMD--KARYDKAIKACALDKDINNFDHGDLTEIGQRG 717 (1354)
Q Consensus 659 ------------~i~yv~Q~~~~~-~~ti~eni~~g------~~~~--~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g 717 (1354)
+.++|+|+..++ .+|+.||+.-. .+-+ .++.+..+...++.+.-+ ..+
T Consensus 82 ~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~-----------~YP 150 (256)
T COG4598 82 PADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKAD-----------AYP 150 (256)
T ss_pred eCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhh-----------cCc
Confidence 379999998775 57999999743 2221 234444555566654433 456
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeE
Q 000680 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1354)
Q Consensus 718 ~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1354)
..|||||+||++|||||..+|+++|+|||||||||+-.-.+.+.+.....+|+|.++|||.+.|.++ +.+|+.+++|.|
T Consensus 151 ~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~i 230 (256)
T COG4598 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKI 230 (256)
T ss_pred cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeeccee
Confidence 7899999999999999999999999999999999998888776555566789999999999999998 599999999999
Q ss_pred EEecChHHHHhcCc
Q 000680 797 TQSGNYQELLLAGT 810 (1354)
Q Consensus 797 ~~~g~~~~l~~~~~ 810 (1354)
.++|+++++..++.
T Consensus 231 EE~G~P~qvf~nP~ 244 (256)
T COG4598 231 EEEGPPEQVFGNPQ 244 (256)
T ss_pred cccCChHHHhcCCC
Confidence 99999999987643
No 324
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-33 Score=302.79 Aligned_cols=160 Identities=34% Similarity=0.464 Sum_probs=144.7
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------e
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------------~ 659 (1354)
++++|++++|+. +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 468999999964 4699999999999999999999999999999999999999999998765 3
Q ss_pred EEEEeCCCCCC-CCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000680 660 IAYVSQTSWIQ-SGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1354)
Q Consensus 660 i~yv~Q~~~~~-~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~ 738 (1354)
++|++|+|.++ +.|++||+.+. ||||||||++||||++++|
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p 119 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDP 119 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCC
Confidence 89999998776 56999998764 9999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhhh-cCEEEEEeCCe
Q 000680 739 DIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1354)
Q Consensus 739 ~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1354)
++++|||||++||+.+.+.+++.+.....+ ++|+|++||+++.+.. +|++++|++|+
T Consensus 120 ~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 120 DVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999998766655455 7899999999999985 89999999985
No 325
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.9e-33 Score=317.04 Aligned_cols=193 Identities=25% Similarity=0.417 Sum_probs=160.0
Q ss_pred EEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEE
Q 000680 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAY 662 (1354)
Q Consensus 596 ~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~y 662 (1354)
+++|+++. .+|+|+||++++||+++|+|+||||||||+++|+|..++ +|+|.++| .++|
T Consensus 2 ~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 2 QLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred cccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEE
Confidence 45666663 279999999999999999999999999999999999864 99999876 2899
Q ss_pred EeCCCC-CCCCcHHHHHhcCCCC--C----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh
Q 000680 663 VSQTSW-IQSGSIRDNILYGKPM--D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 663 v~Q~~~-~~~~ti~eni~~g~~~--~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1354)
++|++. .++.|++||+.++... + .++..++++..++.+.+ ...+..||||||||++||||++
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~ 142 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKL-----------GRSVNQLSGGEWQRVRLAAVVL 142 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHh-----------cCCcccCCHHHHHHHHHHHHHh
Confidence 999974 5678999999986432 1 22445566666654333 2466789999999999999999
Q ss_pred c-------CCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 736 N-------DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 736 ~-------~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
+ +|+++||||||++||+...+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|+.+++..
T Consensus 143 ~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 143 QVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred ccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 8 679999999999999999999887665544468999999999998765 89999999999999999988754
No 326
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-33 Score=300.07 Aligned_cols=158 Identities=39% Similarity=0.646 Sum_probs=144.0
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~ 661 (1354)
++++|+++.|+.. ..++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4688999999753 23689999999999999999999999999999999999999999999877 389
Q ss_pred EEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEE
Q 000680 662 YVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741 (1354)
Q Consensus 662 yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~il 741 (1354)
|++|++.+++.|++||+ ||||||||++||||++.+|+++
T Consensus 80 ~~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~ll 118 (171)
T cd03228 80 YVPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPIL 118 (171)
T ss_pred EEcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEE
Confidence 99999988888999997 9999999999999999999999
Q ss_pred EEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCe
Q 000680 742 LFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1354)
Q Consensus 742 lLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~ 795 (1354)
||||||++||+.+.+.+.+.+... .+++|+|++||+++.++.||++++|++|+
T Consensus 119 llDEP~~gLD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 119 ILDEATSALDPETEALILEALRAL-AKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999999987765444 45799999999999998899999999985
No 327
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-34 Score=304.02 Aligned_cols=202 Identities=23% Similarity=0.351 Sum_probs=169.5
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------eE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~i 660 (1354)
.+.++++.+|.. -.+++|+||++++||+++++||||||||||+++|.|.++|++|+|.++| .|
T Consensus 5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 467889998873 4699999999999999999999999999999999999999999999988 38
Q ss_pred EEEeCCCCCC-CCcHHHHHhcCCC-------------C--C----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCC
Q 000680 661 AYVSQTSWIQ-SGSIRDNILYGKP-------------M--D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1354)
Q Consensus 661 ~yv~Q~~~~~-~~ti~eni~~g~~-------------~--~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~L 720 (1354)
+--+|.+-+| ++||.||++.+.. + + .++..+.++.++|.+.. ++...+|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a-----------~~~A~~L 150 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELA-----------DRPAGNL 150 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhh-----------cchhhcC
Confidence 8999999775 6799999987621 1 0 11222333344443322 3667899
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEE
Q 000680 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1354)
Q Consensus 721 SgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1354)
|+|||+|+.|||||+.+|+++|||||.+|+.+....++.+.+.+... .|.|+++|.||++.+.. ||||+||+.|+++.
T Consensus 151 syG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IA 230 (250)
T COG0411 151 SYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIA 230 (250)
T ss_pred ChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcc
Confidence 99999999999999999999999999999999999999877665544 46899999999999876 89999999999999
Q ss_pred ecChHHHHhcCc
Q 000680 799 SGNYQELLLAGT 810 (1354)
Q Consensus 799 ~g~~~~l~~~~~ 810 (1354)
+|+|+|+.+++.
T Consensus 231 eG~P~eV~~dp~ 242 (250)
T COG0411 231 EGTPEEVRNNPR 242 (250)
T ss_pred cCCHHHHhcCHH
Confidence 999999987654
No 328
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-33 Score=356.70 Aligned_cols=206 Identities=19% Similarity=0.289 Sum_probs=171.7
Q ss_pred CcEEEEeeEEEeCCC--------CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------
Q 000680 593 RSVKIQEGNFSWDPE--------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~--------~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------ 658 (1354)
..++++|+++.|+.. ....+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~ 391 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL 391 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC
Confidence 458999999999631 124689999999999999999999999999999999999999999999876
Q ss_pred ----------eEEEEeCCCC--C-CCCcHHHHHhcCC---CC-CH----HHHHHHHHHhccHHHHhcCCCCCcccccCCC
Q 000680 659 ----------SIAYVSQTSW--I-QSGSIRDNILYGK---PM-DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRG 717 (1354)
Q Consensus 659 ----------~i~yv~Q~~~--~-~~~ti~eni~~g~---~~-~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g 717 (1354)
+|+|++|+|. + ++.||.||+.++. .. .. ++..+.++.+++..+. ...+.
T Consensus 392 ~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~----------~~~~~ 461 (623)
T PRK10261 392 SPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEH----------AWRYP 461 (623)
T ss_pred CHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHH----------hhCCc
Confidence 3899999983 3 4679999997642 11 11 3445566666664221 12556
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCe
Q 000680 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1354)
Q Consensus 718 ~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1354)
.+|||||||||+||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|+||||++.+.. ||+|++|++|+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 78999999999999999999999999999999999999999876655444 38899999999999876 89999999999
Q ss_pred EEEecChHHHHhc
Q 000680 796 ITQSGNYQELLLA 808 (1354)
Q Consensus 796 i~~~g~~~~l~~~ 808 (1354)
|++.|+.+++..+
T Consensus 542 iv~~g~~~~i~~~ 554 (623)
T PRK10261 542 IVEIGPRRAVFEN 554 (623)
T ss_pred EEEecCHHHHhcC
Confidence 9999999998764
No 329
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=1.4e-33 Score=313.00 Aligned_cols=192 Identities=28% Similarity=0.336 Sum_probs=154.0
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeC-CCCC-CCC
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQ-TSWI-QSG 672 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~i~yv~Q-~~~~-~~~ 672 (1354)
+.++|.+..|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|...+..+ ...+ ++.
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 99 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPEL 99 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCC
Confidence 456677777753 46999999999999999999999999999999999999999999999997544333 2333 467
Q ss_pred cHHHHHhcCCC---CCHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 000680 673 SIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1354)
Q Consensus 673 ti~eni~~g~~---~~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1354)
|++||+.++.. .+.+ +..++++..++.+.+ .....+||||||||++||||++++|+++||||
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~laral~~~p~llllDE 168 (224)
T cd03220 100 TGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFI-----------DLPVKTYSSGMKARLAFAIATALEPDILLIDE 168 (224)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999986532 1221 233334433443222 24567899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 746 p~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
||++||+.+.+.+.+.+.....+++|+|++||+++.+.. +|++++|++|++++.|
T Consensus 169 P~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 169 VLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999888665554567899999999999875 8999999999998765
No 330
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=3.7e-33 Score=316.08 Aligned_cols=198 Identities=22% Similarity=0.307 Sum_probs=161.6
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCC--ccCCCcEEEEcC-------------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE--IPKISGTVNLYG------------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~--~~~~~G~i~~~g------------- 658 (1354)
.++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+ ++|++|+|.++|
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 5899999999963 3699999999999999999999999999999999998 579999998865
Q ss_pred -eEEEEeCCCCCCC-CcHHHHHhcCCC----------CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCC-CCC
Q 000680 659 -SIAYVSQTSWIQS-GSIRDNILYGKP----------MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGL-NLS 721 (1354)
Q Consensus 659 -~i~yv~Q~~~~~~-~ti~eni~~g~~----------~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~-~LS 721 (1354)
.++|++|++.++. .|+++|+.++.. .+. ++..++++.+++.+. ..+.... .||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~~LS 153 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPS----------FLSRNVNEGFS 153 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchh----------hhccccccCCC
Confidence 2789999987665 589999876421 011 122334444444311 1234444 599
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh--cCEEEEEeCCeEEEe
Q 000680 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE--VDRILVLEGGQITQS 799 (1354)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~--~d~i~~l~~G~i~~~ 799 (1354)
||||||++||||++++|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++++.. +|++++|++|++++.
T Consensus 154 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999887665544568999999999999875 799999999999999
Q ss_pred cChHH
Q 000680 800 GNYQE 804 (1354)
Q Consensus 800 g~~~~ 804 (1354)
|++++
T Consensus 234 ~~~~~ 238 (252)
T CHL00131 234 GDAEL 238 (252)
T ss_pred cChhh
Confidence 98874
No 331
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=1.5e-33 Score=315.48 Aligned_cols=180 Identities=24% Similarity=0.364 Sum_probs=147.9
Q ss_pred CCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEEEe-CCCCC-CCCcHH
Q 000680 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAYVS-QTSWI-QSGSIR 675 (1354)
Q Consensus 610 ~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~i~yv~-Q~~~~-~~~ti~ 675 (1354)
+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|++ |++.+ +..|++
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~ 113 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVI 113 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHH
Confidence 4699999999999999999999999999999999999999999998876 489998 55555 467999
Q ss_pred HHHhcCCC---CCHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 000680 676 DNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFS 748 (1354)
Q Consensus 676 eni~~g~~---~~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s 748 (1354)
||+.+... .+.+ +..+.++.+++.+.. ..+..+||||||||++||||++.+|+++||||||+
T Consensus 114 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 182 (236)
T cd03267 114 DSFYLLAAIYDLPPARFKKRLDELSELLDLEELL-----------DTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTI 182 (236)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 99976422 2222 223344444443322 24567899999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 749 AVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 749 ~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
+||+.+.+++.+.+..... +++|+|++||+++++.. ||++++|++|++++.|
T Consensus 183 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 183 GLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999998876655433 47899999999999876 8999999999998764
No 332
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.2e-33 Score=307.33 Aligned_cols=183 Identities=25% Similarity=0.296 Sum_probs=156.3
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~i~y 662 (1354)
++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| +++|
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEE
Confidence 678999999963 4689999999999999999999999999999999999999999999876 3899
Q ss_pred EeCCCCCC-CCcHHHHHhcCCC----CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcC
Q 000680 663 VSQTSWIQ-SGSIRDNILYGKP----MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1354)
Q Consensus 663 v~Q~~~~~-~~ti~eni~~g~~----~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~ 737 (1354)
++|++.++ +.|++||+.++.+ .++++.+++++..++....+ .+..+||||||||++||||++++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFED-----------VPVRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhh-----------CChhhcCHHHHHHHHHHHHHhcC
Confidence 99998765 4799999987532 23456677777777764432 45678999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhc-CEEEEE
Q 000680 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVL 791 (1354)
Q Consensus 738 ~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~-d~i~~l 791 (1354)
|++++|||||++||+.+.+.+.+.+.....+++|+|++||+++++..+ +|++++
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999998876554445688999999999999876 677766
No 333
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.4e-34 Score=277.60 Aligned_cols=201 Identities=29% Similarity=0.421 Sum_probs=168.9
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------- 658 (1354)
+|++++.+|.|... .+|-||+|+.+.||.+.+.||+|+|||||++.+.=+.-|.+|+..+.|
T Consensus 2 sirv~~in~~yg~~---q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGAH---QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEcccccccccc---hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 58899999999853 589999999999999999999999999999999888889999998865
Q ss_pred ----eEEEEeCCCCC-CCCcHHHHHhc------CCCCC--HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 ----SIAYVSQTSWI-QSGSIRDNILY------GKPMD--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 ----~i~yv~Q~~~~-~~~ti~eni~~------g~~~~--~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
++|.|+|+-.+ +..||.||+.- |.+.+ ..+..+.++...|.+..+.+ +..|||||+
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~-----------plhlsggqq 147 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRY-----------PLHLSGGQQ 147 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccC-----------ceecccchh
Confidence 49999999766 46799999864 22222 22344555555555544444 457999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
|||+||||++.+|+++|+||||+||||+...++.+.+......|-|-++|||.+++.++ |.+|+.|++|+|++.|+.+-
T Consensus 148 qrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred hhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhh
Confidence 99999999999999999999999999999999987665555678999999999999987 79999999999999999877
Q ss_pred HHhc
Q 000680 805 LLLA 808 (1354)
Q Consensus 805 l~~~ 808 (1354)
+.+.
T Consensus 228 ft~p 231 (242)
T COG4161 228 FTEP 231 (242)
T ss_pred ccCc
Confidence 6543
No 334
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-34 Score=292.85 Aligned_cols=200 Identities=28% Similarity=0.438 Sum_probs=171.8
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~ 661 (1354)
|+++|++.+|+. +.+++|+|++|++|.+++++||||+||||||+.+.+++++++|+|.++| +++
T Consensus 2 I~i~nv~K~y~~---~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYGT---KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhCC---EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 678999999974 4799999999999999999999999999999999999999999999998 377
Q ss_pred EEeCCCCCC-CCcHHHHHhcCC-CC--------CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000680 662 YVSQTSWIQ-SGSIRDNILYGK-PM--------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1354)
Q Consensus 662 yv~Q~~~~~-~~ti~eni~~g~-~~--------~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1354)
..-|+..+. ..||||-+.||+ || |+...+++++-..|++ + .+ +.-.+||||||||.-+|
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~-l---~d-------ryLd~LSGGQrQRAfIA 147 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLED-L---SD-------RYLDELSGGQRQRAFIA 147 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccc-h---HH-------HhHHhcccchhhhhhhh
Confidence 888887764 569999999996 33 3345566666555432 1 11 34457999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
..+++|.|.++||||+++||.+....+++.+.+... -|||+|+|-||+++.+. +|+|+-|++|+++.+|+++|++..
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 999999999999999999999999999987766543 48999999999999986 899999999999999999999854
No 335
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.8e-34 Score=281.69 Aligned_cols=179 Identities=26% Similarity=0.381 Sum_probs=155.8
Q ss_pred CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEEEeCCCCCCCCcHH
Q 000680 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWIQSGSIR 675 (1354)
Q Consensus 609 ~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~yv~Q~~~~~~~ti~ 675 (1354)
+.++|+++||++.+||..+|+||+|||||||+++++-+..|++|++.+.| +|+||.|.|-+|.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 46799999999999999999999999999999999999999999999988 49999999999999999
Q ss_pred HHHhcCC-----CCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCc
Q 000680 676 DNILYGK-----PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAV 750 (1354)
Q Consensus 676 eni~~g~-----~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~l 750 (1354)
||+.|.. ..|.......++..++.+ +.+.++..+||||+|||++|+|-|---|+|+|||||||||
T Consensus 95 DNlifP~~~r~rr~dr~aa~~llar~~l~~----------~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAALDLLARFALPD----------SILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hccccchHHhccCCChHHHHHHHHHcCCch----------hhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 9999963 345555555555444432 3445788899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHh-cCCcEEEEEcCCcch-hhhcCEEEEEeCCeEE
Q 000680 751 DAHTAATLFNECVMAA-LEKKTVILVTHQVEF-LSEVDRILVLEGGQIT 797 (1354)
Q Consensus 751 D~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~-l~~~d~i~~l~~G~i~ 797 (1354)
|+++.+.|-+.+.+.. .++..++.||||.+. +.++|+++-+..|++-
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 9999999876665554 467899999999988 7889999999998764
No 336
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.9e-33 Score=306.77 Aligned_cols=187 Identities=22% Similarity=0.298 Sum_probs=155.4
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------eEEE
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAY 662 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g----------~i~y 662 (1354)
..++++|++++|+. +++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|
T Consensus 10 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~ 86 (214)
T PRK13543 10 PLLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAY 86 (214)
T ss_pred ceEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEE
Confidence 46899999999963 3699999999999999999999999999999999999999999999987 2899
Q ss_pred EeCCCCCCC-CcHHHHHhcCCCC----CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcC
Q 000680 663 VSQTSWIQS-GSIRDNILYGKPM----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1354)
Q Consensus 663 v~Q~~~~~~-~ti~eni~~g~~~----~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~ 737 (1354)
++|++.++. .|++||+.++... .+++.++.++..++.+. ...+..+||||||||++||||++.+
T Consensus 87 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~laral~~~ 155 (214)
T PRK13543 87 LGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGY-----------EDTLVRQLSAGQKKRLALARLWLSP 155 (214)
T ss_pred eecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhh-----------ccCChhhCCHHHHHHHHHHHHHhcC
Confidence 999987665 4999999764321 12233344444443322 2356678999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeC
Q 000680 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEG 793 (1354)
Q Consensus 738 ~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~ 793 (1354)
|++++|||||++||+...+.+.+.+.....+++|+|++||+++.+.+ +|++++++.
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 156 APLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 99999999999999999999887665555568999999999999876 799999864
No 337
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-33 Score=310.33 Aligned_cols=208 Identities=24% Similarity=0.399 Sum_probs=166.4
Q ss_pred EEEEeeEEEeCCCC-CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-C----CCcEEEEcC----------
Q 000680 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-K----ISGTVNLYG---------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~-~----~~G~i~~~g---------- 658 (1354)
++++|.+.+|.... ...+++||||++++||+++|||.+||||||+.++|+|+++ + .+|+|.++|
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 46888888886542 3579999999999999999999999999999999999998 3 578998876
Q ss_pred -------eEEEEeCCCCC---CCCcHHHHHh----cCCCC--C---HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCC
Q 000680 659 -------SIAYVSQTSWI---QSGSIRDNIL----YGKPM--D---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1354)
Q Consensus 659 -------~i~yv~Q~~~~---~~~ti~eni~----~g~~~--~---~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~ 719 (1354)
.|||++|+|.- +-.||.+-+. ..... . .++..+.++..++.+.- ..+...+.+
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~--------~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPE--------RRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHH--------HHHhhCCcc
Confidence 49999999842 3346655443 22221 1 22344444555543221 123467789
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEE
Q 000680 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1354)
Q Consensus 720 LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1354)
|||||||||.||.|+..+|+++|.||||+|||..++.+|.+.+.+... .|.|+|+||||+..+.+ ||||+||..|+|+
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 999999999999999999999999999999999999999886655443 68999999999999876 8999999999999
Q ss_pred EecChHHHHhcCc
Q 000680 798 QSGNYQELLLAGT 810 (1354)
Q Consensus 798 ~~g~~~~l~~~~~ 810 (1354)
|.|+.+++.++..
T Consensus 234 E~g~~~~i~~~P~ 246 (316)
T COG0444 234 EEGPVEEIFKNPK 246 (316)
T ss_pred EeCCHHHHhcCCC
Confidence 9999999987654
No 338
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=8.5e-33 Score=312.42 Aligned_cols=198 Identities=24% Similarity=0.309 Sum_probs=154.8
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCc--cCCCcEEEEcC--------------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLYG-------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~--~~~~G~i~~~g-------------- 658 (1354)
++++|+++.|+. .++++|+||+|++||+++|+|+||||||||+++|+|+. +|++|+|.++|
T Consensus 2 i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 688999999973 46999999999999999999999999999999999995 69999998876
Q ss_pred eEEEEeCCCCCCC-CcHHHHHhcCC-------C---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCC-CCCCh
Q 000680 659 SIAYVSQTSWIQS-GSIRDNILYGK-------P---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRG-LNLSG 722 (1354)
Q Consensus 659 ~i~yv~Q~~~~~~-~ti~eni~~g~-------~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g-~~LSg 722 (1354)
.++|++|++.++. .|..+++.+.. . .+. ++.++.++..+ ++.+..+ ..+ .+|||
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~---~~~~~~LS~ 148 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLK-------MPEDLLT---RSVNVGFSG 148 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcC-------CChhhcc---cCCCCCCCH
Confidence 2899999987543 35555543211 0 010 11122222222 2222222 233 37999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh--cCEEEEEeCCeEEEec
Q 000680 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE--VDRILVLEGGQITQSG 800 (1354)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~--~d~i~~l~~G~i~~~g 800 (1354)
|||||++||||++++|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++++.. +|+|++|++|++++.|
T Consensus 149 G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g 228 (248)
T PRK09580 149 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 228 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeC
Confidence 99999999999999999999999999999999999877554444457899999999999886 7999999999999999
Q ss_pred ChHHH
Q 000680 801 NYQEL 805 (1354)
Q Consensus 801 ~~~~l 805 (1354)
+++..
T Consensus 229 ~~~~~ 233 (248)
T PRK09580 229 DFTLV 233 (248)
T ss_pred CHHHH
Confidence 98854
No 339
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.1e-33 Score=304.19 Aligned_cols=182 Identities=24% Similarity=0.335 Sum_probs=152.1
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~i~y 662 (1354)
++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| +++|
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEE
Confidence 678999999963 4699999999999999999999999999999999999999999999876 4899
Q ss_pred EeCCCCCC-CCcHHHHHhcCCCC--CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 000680 663 VSQTSWIQ-SGSIRDNILYGKPM--DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1354)
Q Consensus 663 v~Q~~~~~-~~ti~eni~~g~~~--~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ 739 (1354)
++|++.++ ..|++||+.++... ++.+..+.++..++.+. .+.+..+||||||||++||||++++|+
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHL-----------IDYPCGLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchh-----------hhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 99998774 68999999986321 22334444444444321 124556899999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEE
Q 000680 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILV 790 (1354)
Q Consensus 740 illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~ 790 (1354)
+++|||||++||+.+.+.+.+.+.....+++|+|++||+.+.+.++|.-++
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 999999999999999999887665544568999999999999999997553
No 340
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=4.6e-33 Score=303.55 Aligned_cols=172 Identities=28% Similarity=0.369 Sum_probs=148.8
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCC--ccCCCcEEEEcC--------------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE--IPKISGTVNLYG-------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~--~~~~~G~i~~~g-------------- 658 (1354)
++++|++++|+. .++++|+||++++||+++|+|+||||||||+++|+|+ .+|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 468899999973 4699999999999999999999999999999999999 479999999876
Q ss_pred eEEEEeCCCCCCC-CcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcC
Q 000680 659 SIAYVSQTSWIQS-GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1354)
Q Consensus 659 ~i~yv~Q~~~~~~-~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~ 737 (1354)
.++|++|++.+++ .++++|+ . ....+||||||||++||||++++
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l------------------------~-----------~~~~~LS~G~~qrv~laral~~~ 122 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL------------------------R-----------YVNEGFSGGEKKRNEILQLLLLE 122 (200)
T ss_pred cEEEeecChhhccCccHHHHH------------------------h-----------hccccCCHHHHHHHHHHHHHhcC
Confidence 2999999987665 4666665 0 11247999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhh--hcCEEEEEeCCeEEEecChHHH
Q 000680 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS--EVDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 738 ~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~--~~d~i~~l~~G~i~~~g~~~~l 805 (1354)
|++++|||||++||+.+.+.+.+.+.+...+++|+|++||+++.+. .+|++++|++|++.+.| ..|+
T Consensus 123 p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~ 191 (200)
T cd03217 123 PDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKEL 191 (200)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHH
Confidence 9999999999999999999988766554445889999999999987 58999999999999998 4444
No 341
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=6.2e-33 Score=302.94 Aligned_cols=183 Identities=25% Similarity=0.367 Sum_probs=155.8
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~i~y 662 (1354)
++++|+++.|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++| +++|
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEE
Confidence 468999999964 4689999999999999999999999999999999999999999998876 4899
Q ss_pred EeCCCCCC-CCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000680 663 VSQTSWIQ-SGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1354)
Q Consensus 663 v~Q~~~~~-~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1354)
++|++.++ +.|++||+.+..+ .++++.+++++..++....+ .+..+||||||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-----------RPVAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhc-----------CchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99998764 6899999987643 34556677777777764332 45678999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEE
Q 000680 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVL 791 (1354)
Q Consensus 741 llLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l 791 (1354)
+||||||++||+...+++.+.+.....+|+|+|++||+...+.. +|+++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999887665544568999999999887665 6888776
No 342
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=3.5e-33 Score=299.38 Aligned_cols=178 Identities=28% Similarity=0.444 Sum_probs=141.8
Q ss_pred EEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCCCCCCCcHH
Q 000680 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIR 675 (1354)
Q Consensus 596 ~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~i~yv~Q~~~~~~~ti~ 675 (1354)
+++|+++.|+. .++|+|+||++++||+++|+||||||||||+++|.|+.+|++|+|.++|.- +.+ ......+
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~--~~~---~~~~~~~ 72 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKD--LAS---LSPKELA 72 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE--CCc---CCHHHHH
Confidence 46899999964 469999999999999999999999999999999999999999999998730 000 0001122
Q ss_pred HHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHH
Q 000680 676 DNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA 755 (1354)
Q Consensus 676 eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~ 755 (1354)
..+.+- .++++.+++.+.++ .++.+||||||||++||||++.+|+++||||||++||+.+.
T Consensus 73 ~~i~~~--------~q~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~ 133 (180)
T cd03214 73 RKIAYV--------PQALELLGLAHLAD-----------RPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQ 133 (180)
T ss_pred HHHhHH--------HHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 222211 11666667765433 45678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC-CcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 756 ATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 756 ~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
+.+.+.+.....+ ++|+|++||+++++.. +|++++|++|++++.|
T Consensus 134 ~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 134 IELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9987765544344 7899999999999865 8999999999998654
No 343
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=5.3e-33 Score=347.17 Aligned_cols=205 Identities=19% Similarity=0.322 Sum_probs=168.0
Q ss_pred CcEEEEeeEEEeCCC--------CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------
Q 000680 593 RSVKIQEGNFSWDPE--------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~--------~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------ 658 (1354)
..++++|+++.|+.. .++++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~ 352 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNL 352 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEcccc
Confidence 358999999999631 12469999999999999999999999999999999999985 899999876
Q ss_pred ----------eEEEEeCCCC--C-CCCcHHHHHhcCCC-----CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCC
Q 000680 659 ----------SIAYVSQTSW--I-QSGSIRDNILYGKP-----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1354)
Q Consensus 659 ----------~i~yv~Q~~~--~-~~~ti~eni~~g~~-----~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~ 716 (1354)
+++|++|++. + .+.|++||+.++.. .+. ++..+.++..++..+. ...+
T Consensus 353 ~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~ 422 (529)
T PRK15134 353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPET----------RHRY 422 (529)
T ss_pred chhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHH----------HhcC
Confidence 2899999972 4 45799999987521 121 2334445555553211 2356
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCC
Q 000680 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGG 794 (1354)
Q Consensus 717 g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G 794 (1354)
..+|||||||||+||||++.+|+++||||||++||+.+.+.+++.+..... .|+|+|+||||++++.. ||+|++|++|
T Consensus 423 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQG 502 (529)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 778999999999999999999999999999999999999999886665544 38899999999999876 8999999999
Q ss_pred eEEEecChHHHHhc
Q 000680 795 QITQSGNYQELLLA 808 (1354)
Q Consensus 795 ~i~~~g~~~~l~~~ 808 (1354)
++++.|+.+++.+.
T Consensus 503 ~i~~~~~~~~~~~~ 516 (529)
T PRK15134 503 EVVEQGDCERVFAA 516 (529)
T ss_pred EEEEEcCHHHHhcC
Confidence 99999999988653
No 344
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-33 Score=347.79 Aligned_cols=203 Identities=19% Similarity=0.308 Sum_probs=165.4
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-CCCcEEEEcC-------------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-KISGTVNLYG------------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~-~~~G~i~~~g------------- 658 (1354)
..++++|+++.|+...+.++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|
T Consensus 258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~ 337 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIA 337 (506)
T ss_pred ceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence 35899999999853223469999999999999999999999999999999999998 5999999876
Q ss_pred -eEEEEeCCC---CC-CCCcHHHHHhcCCC--C------CH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCC
Q 000680 659 -SIAYVSQTS---WI-QSGSIRDNILYGKP--M------DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1354)
Q Consensus 659 -~i~yv~Q~~---~~-~~~ti~eni~~g~~--~------~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LS 721 (1354)
.++|++|++ .+ .+.|+.||+.++.. + +. ++.++.++.+++.. + ....+..+||
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~--~~~~~~~~LS 407 (506)
T PRK13549 338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKT--------A--SPELAIARLS 407 (506)
T ss_pred CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccC--------C--CcccccccCC
Confidence 289999996 34 46799999987521 1 11 12233333333311 0 1235678999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
|||||||+||||+..+|+++||||||++||+.+.+.+++.+.....+|+|+|++|||++++.. ||++++|++|+++..|
T Consensus 408 gG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~ 487 (506)
T PRK13549 408 GGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDL 487 (506)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999999999987666555568999999999999876 8999999999999999
Q ss_pred ChHHH
Q 000680 801 NYQEL 805 (1354)
Q Consensus 801 ~~~~l 805 (1354)
+.+++
T Consensus 488 ~~~~~ 492 (506)
T PRK13549 488 INHNL 492 (506)
T ss_pred ccccC
Confidence 88775
No 345
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=8.4e-33 Score=344.92 Aligned_cols=209 Identities=22% Similarity=0.367 Sum_probs=167.9
Q ss_pred CcEEEEeeEEEeCC--CCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEc-C-----------
Q 000680 593 RSVKIQEGNFSWDP--ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY-G----------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~--~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~-g----------- 658 (1354)
..++++|++++|+. +...++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++ |
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~ 357 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP 357 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccch
Confidence 35999999999963 122469999999999999999999999999999999999999999999984 3
Q ss_pred --------eEEEEeCCCCCC-CCcHHHHHhcCCC--CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChH
Q 000680 659 --------SIAYVSQTSWIQ-SGSIRDNILYGKP--MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1354)
Q Consensus 659 --------~i~yv~Q~~~~~-~~ti~eni~~g~~--~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgG 723 (1354)
+++|++|++.++ +.|++||+.++.. ... ++..+.++.+++.... .......+..+||||
T Consensus 358 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~~~~~LSgG 431 (520)
T TIGR03269 358 DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEK------AEEILDKYPDELSEG 431 (520)
T ss_pred hhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCcc------chhhhhCChhhCCHH
Confidence 289999998655 4699999986321 111 1233344444442100 000124667899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecC
Q 000680 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1354)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1354)
|||||+||||++.+|+++||||||++||+...+.+.+.+..... .|+|+|+||||++++.. ||++++|++|++++.|+
T Consensus 432 q~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~ 511 (520)
T TIGR03269 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511 (520)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999876655443 38999999999999876 89999999999999999
Q ss_pred hHHHHh
Q 000680 802 YQELLL 807 (1354)
Q Consensus 802 ~~~l~~ 807 (1354)
++++.+
T Consensus 512 ~~~~~~ 517 (520)
T TIGR03269 512 PEEIVE 517 (520)
T ss_pred HHHHHh
Confidence 888753
No 346
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1e-32 Score=290.49 Aligned_cols=160 Identities=26% Similarity=0.418 Sum_probs=131.5
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe-EEEEeCCCCCCCCc
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-IAYVSQTSWIQSGS 673 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~-i~yv~Q~~~~~~~t 673 (1354)
++++|++++|+. .++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|. +. + .+
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~---~------~~ 68 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVS---F------AS 68 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECC---c------CC
Confidence 468999999963 36999999999999999999999999999999999999999999999873 11 0 00
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHH
Q 000680 674 IRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH 753 (1354)
Q Consensus 674 i~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~ 753 (1354)
.++ .+. ..+... ..||||||||++||||++++|++++|||||++||+.
T Consensus 69 ~~~-----------~~~---------~~i~~~------------~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~ 116 (163)
T cd03216 69 PRD-----------ARR---------AGIAMV------------YQLSVGERQMVEIARALARNARLLILDEPTAALTPA 116 (163)
T ss_pred HHH-----------HHh---------cCeEEE------------EecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHH
Confidence 000 000 000000 019999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEE
Q 000680 754 TAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1354)
Q Consensus 754 ~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1354)
+.+++.+.+.....+++|+|++||+++.+.. +|++++|++|++++
T Consensus 117 ~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 117 EVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999887665554568999999999998876 89999999999875
No 347
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1e-32 Score=309.34 Aligned_cols=192 Identities=23% Similarity=0.336 Sum_probs=156.5
Q ss_pred EEeCCCCCCCcceeeeEEee-----CCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-eEEEEeCCCC-CCCCcH
Q 000680 602 FSWDPELAIPTLRGVNLDIK-----WAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSW-IQSGSI 674 (1354)
Q Consensus 602 f~~~~~~~~~~l~~i~l~i~-----~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-~i~yv~Q~~~-~~~~ti 674 (1354)
|+|++. ...++|++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++| +|+|++|++. .++.|+
T Consensus 1 ~~y~~~--~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv 78 (246)
T cd03237 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTV 78 (246)
T ss_pred CCCccc--ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCH
Confidence 567643 347888888887 6899999999999999999999999999999999999 8999999986 467899
Q ss_pred HHHHhcCCC-C--CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcC
Q 000680 675 RDNILYGKP-M--DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVD 751 (1354)
Q Consensus 675 ~eni~~g~~-~--~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD 751 (1354)
+||+.+... . ...+..++++.+++.+.+ ..++.+||||||||++||||++.+|+++||||||++||
T Consensus 79 ~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~-----------~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD 147 (246)
T cd03237 79 RDLLSSITKDFYTHPYFKTEIAKPLQIEQIL-----------DREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147 (246)
T ss_pred HHHHHHHhhhccccHHHHHHHHHHcCCHHHh-----------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 999975422 1 123345566666665433 25667899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEE--EecChHHHH
Q 000680 752 AHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQIT--QSGNYQELL 806 (1354)
Q Consensus 752 ~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~--~~g~~~~l~ 806 (1354)
+.+.+.+.+.+..... +++|+|+|||+++.+.. ||+|++|+++..+ ..++++++.
T Consensus 148 ~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 148 VEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 9999998776554433 47999999999999886 8999999775444 556666654
No 348
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2e-32 Score=300.32 Aligned_cols=184 Identities=23% Similarity=0.300 Sum_probs=156.2
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------eEEEEe
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAYVS 664 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g----------~i~yv~ 664 (1354)
++++|+++.|+. ..+++|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++| .++|++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (207)
T PRK13539 3 LEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLG 79 (207)
T ss_pred EEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEec
Confidence 789999999963 3589999999999999999999999999999999999999999999887 379999
Q ss_pred CCCCC-CCCcHHHHHhcCCC---CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000680 665 QTSWI-QSGSIRDNILYGKP---MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1354)
Q Consensus 665 Q~~~~-~~~ti~eni~~g~~---~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1354)
|++.+ ++.|++||+.+... .++++..++++..++.+..+ .+..+||||||||++||||++++|++
T Consensus 80 ~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~al~~~p~l 148 (207)
T PRK13539 80 HRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH-----------LPFGYLSAGQKRRVALARLLVSNRPI 148 (207)
T ss_pred CCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHc-----------CChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 87654 57899999976432 23445666777777754332 34568999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeC
Q 000680 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEG 793 (1354)
Q Consensus 741 llLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~ 793 (1354)
++|||||++||+.+.+.+.+.+.....+|+|+|++||+++.++. |+++.++.
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 149 WILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 99999999999999999987665545568999999999999988 99887744
No 349
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=4.9e-33 Score=351.75 Aligned_cols=196 Identities=27% Similarity=0.373 Sum_probs=162.7
Q ss_pred CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEEcCe----------EEEEeCCCCCC-CCc
Q 000680 608 LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYGS----------IAYVSQTSWIQ-SGS 673 (1354)
Q Consensus 608 ~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~---~G~i~~~g~----------i~yv~Q~~~~~-~~t 673 (1354)
.++++|+|+|+++++||+++|+|||||||||||++|+|+.++. +|+|.++|. +|||+|+++++ +.|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 3567999999999999999999999999999999999999874 799999883 69999999876 569
Q ss_pred HHHHHhcCCCCCH----HHHHHHHHHhccHHHHhcC--CCCCcccccCC--CCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 000680 674 IRDNILYGKPMDK----ARYDKAIKACALDKDINNF--DHGDLTEIGQR--GLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1354)
Q Consensus 674 i~eni~~g~~~~~----~~~~~~~~~~~l~~~l~~l--~~gd~t~ig~~--g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1354)
|+||+.|+..... .+.++. ...++.++.+ ++..+|.+|+. +..|||||||||+||||++.+|++++|||
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~---~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDE 192 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKR---ERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDE 192 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHH---HHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeC
Confidence 9999998643210 011111 1122233332 33457889974 57899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcc-h-hhhcCEEEEEeCCeEEEecChHHHH
Q 000680 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVE-F-LSEVDRILVLEGGQITQSGNYQELL 806 (1354)
Q Consensus 746 p~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~-~-l~~~d~i~~l~~G~i~~~g~~~~l~ 806 (1354)
||||||++++.++.+.+.+...+|+|+|+++|+++ . .+.+|++++|++|++++.|+++++.
T Consensus 193 PtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 193 PTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255 (617)
T ss_pred CCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence 99999999999999887776667999999999996 4 4568999999999999999999875
No 350
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-33 Score=296.64 Aligned_cols=184 Identities=26% Similarity=0.453 Sum_probs=163.0
Q ss_pred eeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------eEEEEeCCCCCC-CCcHHH
Q 000680 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIAYVSQTSWIQ-SGSIRD 676 (1354)
Q Consensus 615 ~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------------~i~yv~Q~~~~~-~~ti~e 676 (1354)
++||+.+.-.++||-|++|||||||+++|.|+.+|++|.|.++| +||||+|+.-+| +.||+.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 68888888789999999999999999999999999999999987 499999999875 679999
Q ss_pred HHhcCCCCC-HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHH
Q 000680 677 NILYGKPMD-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA 755 (1354)
Q Consensus 677 ni~~g~~~~-~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~ 755 (1354)
|+.||.... ...++++++..++.+-+++. +.+|||||||||+|+|||..+|+++|||||+|+||....
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~-----------P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRY-----------PGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhhC-----------CCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 999998754 66788888888888877754 568999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC-CcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhcC
Q 000680 756 ATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 756 ~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
++|.-.+-+...+ +--++.|||.++++.+ ||+|++|++|++...|..+++..+.
T Consensus 165 ~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 165 REILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred hHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 9987765444332 5679999999998765 9999999999999999999998654
No 351
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=9.6e-33 Score=306.31 Aligned_cols=179 Identities=30% Similarity=0.456 Sum_probs=149.5
Q ss_pred EEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------eEEEEeCCCCC---CCCcHHHHHhcCCC---
Q 000680 618 LDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQTSWI---QSGSIRDNILYGKP--- 683 (1354)
Q Consensus 618 l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------~i~yv~Q~~~~---~~~ti~eni~~g~~--- 683 (1354)
|++++||+++|+|+||||||||+++|+|.++|++|+|.++| .++|++|++.+ ++.|++||+.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 57899999999999999999999999999999999999988 39999999854 35799999987521
Q ss_pred --C--C----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHH
Q 000680 684 --M--D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA 755 (1354)
Q Consensus 684 --~--~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~ 755 (1354)
+ . .++..++++.+++.+.. ..+..+||||||||++||||++.+|++++|||||++||+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~ 149 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLTELA-----------DRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQ 149 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCchhh-----------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 1 1 12344445555553322 245678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 756 ATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 756 ~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
+.+.+.+.....+|+|+|++||+++.+.. ||+++++ +|++++.|+++++.++
T Consensus 150 ~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~ 202 (223)
T TIGR03771 150 ELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP 202 (223)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence 99988766554568999999999998875 8999999 8999999999988653
No 352
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.3e-30 Score=350.93 Aligned_cols=206 Identities=19% Similarity=0.292 Sum_probs=175.6
Q ss_pred CCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------
Q 000680 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1354)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------ 658 (1354)
.+..++++|+++.|+.+ .+++++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 1934 ~~~~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~ 2012 (2272)
T TIGR01257 1934 KTDILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQ 2012 (2272)
T ss_pred CCceEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhh
Confidence 34579999999999742 25699999999999999999999999999999999999999999999987
Q ss_pred eEEEEeCCCCCC-CCcHHHHHhcCC---CCCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 659 SIAYVSQTSWIQ-SGSIRDNILYGK---PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 659 ~i~yv~Q~~~~~-~~ti~eni~~g~---~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
.||||||++.++ +.|++||+.+.. ...+ ++.+++++.++|.+..+ ++..+||||||||+++
T Consensus 2013 ~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~d-----------k~~~~LSGGqKqRLsl 2081 (2272)
T TIGR01257 2013 NMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYAD-----------RLAGTYSGGNKRKLST 2081 (2272)
T ss_pred hEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhc-----------CChhhCCHHHHHHHHH
Confidence 389999997665 679999997631 1222 23445566666654332 5667899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
|||++.+|++++|||||+|||+..++.+++.+.+...+|+|+|++||+++++.. ||||++|++|+++..|+.+++.++
T Consensus 2082 A~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2082 AIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 999999999999999999999999999998766555568999999999999876 899999999999999999998653
No 353
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=1.4e-32 Score=305.60 Aligned_cols=187 Identities=24% Similarity=0.350 Sum_probs=150.8
Q ss_pred EEEEeeEEEeCCC----CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEc--C----------
Q 000680 595 VKIQEGNFSWDPE----LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY--G---------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~----~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~--g---------- 658 (1354)
++++|+++.|+.. ...++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++ |
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 6789999999631 12468999999999999999999999999999999999999999999886 3
Q ss_pred ---------eEEEEeCCCCCC-CCcHHHHHhcCC---CCCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCC
Q 000680 659 ---------SIAYVSQTSWIQ-SGSIRDNILYGK---PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1354)
Q Consensus 659 ---------~i~yv~Q~~~~~-~~ti~eni~~g~---~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LS 721 (1354)
.++|++|++.++ +.|++||+.++. ..+. ++..++++..++.++. ...++.+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERL----------WHLPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh----------hhCCcccCC
Confidence 389999998764 569999997631 1222 2223333333332211 124577899
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEE
Q 000680 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVL 791 (1354)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l 791 (1354)
||||||++||||++.+|++++|||||++||+++.+.+.+.+.....+|+|+|++||+.+++.. ||+++.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999887665544568999999999998864 8999876
No 354
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.2e-29 Score=294.27 Aligned_cols=452 Identities=17% Similarity=0.197 Sum_probs=295.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHH---HHHHhHHHHHhhHH-HHHHHHHHHHHHHH
Q 000680 331 ESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIV---NYIAVDAYRMGEFP-FWFHLTWSLALQLF 406 (1354)
Q Consensus 331 ~~~~~~~~~~~~~~~~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~iv---Nlms~D~~~i~~~~-~~~~~~w~~plqi~ 406 (1354)
.+....-..|...-+..|.|.-++.-+|++=++-..--+-....+.|. .+++.|++++.... .....+-.+|+.++
T Consensus 135 ~s~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~ 214 (659)
T KOG0060|consen 135 ISLLNALLKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLV 214 (659)
T ss_pred HHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeee
Confidence 344445556778889999999999999998886322110001111222 36788998876533 33445556777777
Q ss_pred HHHHHHHHHHhHHHHHHHHH-HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHH
Q 000680 407 LAIGVLFGVVGLGALPGLVL-FLICGLL----NVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSL 481 (1354)
Q Consensus 407 ~~~~~L~~~lG~~~l~gl~v-~~i~~~l----~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~ 481 (1354)
.-.+.+|...||...+.+.. +++...+ ..|+.+++...|+.. -|-|-+. +++..|-..|-+|+-+..-...
T Consensus 215 ~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklE---GdfRy~h-~rlr~NaE~iAFY~g~~~E~~~ 290 (659)
T KOG0060|consen 215 YYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLE---GDFRYKH-SRLRVNAEEIAFYRGGQVEHQR 290 (659)
T ss_pred hhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhh---cchhhhe-eeeeecchhhhhhccCchHHHH
Confidence 77777777666533222211 1111222 233444444433332 3444433 2344556778899887665555
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH---HHHHHH-HHHHHHhCCCCCCHHHHHHHHH----HHHHHHHHH
Q 000680 482 IESRREKEFKWLSEAQLRKA----YGTVIYWMSPT---IISSVI-FLGCALTGSAPLNASTIFTVLA----TLRSMGEPV 549 (1354)
Q Consensus 482 i~~~R~~El~~l~~~~~~~~----~~~~~~~~~p~---~v~~~~-f~~~~l~~~~~Lt~~~~Ft~l~----lf~~l~~pl 549 (1354)
+++.=+.=++.+++....+. +..++-+...+ ++.... |.+. . ...++++..++-++ .+.-+...+
T Consensus 291 ~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h--~-y~~~s~aEL~~~i~~na~~~i~Li~~f 367 (659)
T KOG0060|consen 291 TDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGH--V-YDDLSPAELSGLISNNAFVFIYLISAF 367 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeeccc--c-cCCcCHHHHHHHHhhhHHHHHHHHHHH
Confidence 54433333344443322111 11111111111 011111 1111 1 13567776655443 234444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-cCCC-------------cchhhh-------ccccCCCCcEEEEeeEEEeCCCC
Q 000680 550 RMIPEALSIMIQVKVSFDRINAFLLD-HELN-------------NDDVRR-------ISLQKSDRSVKIQEGNFSWDPEL 608 (1354)
Q Consensus 550 ~~lp~~i~~~~~a~vS~~Ri~~fL~~-~e~~-------------~~~~~~-------~~~~~~~~~i~~~~~~f~~~~~~ 608 (1354)
..+...-..+.+-..=..||.++.+. ++.. .+...+ ......+..|++++++++-|++
T Consensus 368 ~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~- 446 (659)
T KOG0060|consen 368 GRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTN- 446 (659)
T ss_pred HHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCC-
Confidence 55555555555555567788887641 1100 000000 0112245789999999998876
Q ss_pred CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEc--C---eEEEEeCCCCCCCCcHHHHHhcCC-
Q 000680 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY--G---SIAYVSQTSWIQSGSIRDNILYGK- 682 (1354)
Q Consensus 609 ~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~--g---~i~yv~Q~~~~~~~ti~eni~~g~- 682 (1354)
...+.+|+||+|+.|+-+.|+||||||||||++.+.|+.+..+|++... | .+-|+||.|...-||.||-+.+..
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~ 526 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLK 526 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCc
Confidence 4567888999999999999999999999999999999999999999864 3 499999999999999999999972
Q ss_pred -------CCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHH
Q 000680 683 -------PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA 755 (1354)
Q Consensus 683 -------~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~ 755 (1354)
..+.++..+.++..+|.+-+++...=|+..+-+-...||+|||||+++||-+|++|++-+|||.|||||.+++
T Consensus 527 ~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE 606 (659)
T KOG0060|consen 527 AEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVE 606 (659)
T ss_pred cccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHH
Confidence 1356788899999999887776654444444566789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeC
Q 000680 756 ATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEG 793 (1354)
Q Consensus 756 ~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~ 793 (1354)
..+++.|. ..|.|.|-|.|+.+.-+.-|.++-|+.
T Consensus 607 ~~~Yr~~r---~~giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 607 GALYRKCR---EMGITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHH---HcCCeEEEeccHHHHHhhhhEEEEecC
Confidence 99998774 357899999999998888899999976
No 355
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-32 Score=339.95 Aligned_cols=200 Identities=24% Similarity=0.382 Sum_probs=168.6
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCC--
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSW-- 668 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~~~-- 668 (1354)
..++++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| ++||++|++.
T Consensus 318 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~ 394 (530)
T PRK15064 318 NALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYD 394 (530)
T ss_pred ceEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEccccccc
Confidence 46999999999963 3589999999999999999999999999999999999999999999987 6999999974
Q ss_pred CC-CCcHHHHHhcCC--CCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 000680 669 IQ-SGSIRDNILYGK--PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1354)
Q Consensus 669 ~~-~~ti~eni~~g~--~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1354)
++ +.|++||+.+.. ..++++.++.++..++..+. ...++.+||||||||++||||++++|+++||||
T Consensus 395 ~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGq~qrv~la~al~~~p~lllLDE 464 (530)
T PRK15064 395 FENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDD----------IKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDE 464 (530)
T ss_pred CCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhH----------hcCcccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 33 479999986521 22344556666666663221 125678999999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEE-EecChHHHHhc
Q 000680 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSGNYQELLLA 808 (1354)
Q Consensus 746 p~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~g~~~~l~~~ 808 (1354)
||++||+.+.+.+.+.+.. . +.|+|+||||++++.. ||++++|++|+++ +.|+++++.+.
T Consensus 465 Pt~~LD~~~~~~l~~~l~~-~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 465 PTNHMDMESIESLNMALEK-Y--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred CCCCCCHHHHHHHHHHHHH-C--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 9999999999998875543 2 4599999999999876 8999999999998 88999888654
No 356
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.7e-32 Score=296.56 Aligned_cols=179 Identities=19% Similarity=0.267 Sum_probs=150.6
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------eEEEEeC
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------SIAYVSQ 665 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------~i~yv~Q 665 (1354)
++++|++++|+. +.++ ++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++| .++|++|
T Consensus 2 l~~~~l~~~~~~---~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGH 77 (195)
T ss_pred eEEEEeeEEECC---cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccC
Confidence 678999999963 3344 59999999999999999999999999999999999999999987 2899999
Q ss_pred CCCC-CCCcHHHHHhcCCCC--CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEE
Q 000680 666 TSWI-QSGSIRDNILYGKPM--DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742 (1354)
Q Consensus 666 ~~~~-~~~ti~eni~~g~~~--~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ill 742 (1354)
++.+ ++.|++||+.++... ..++..++++.+++.+.. .+++.+||||||||++||||++++|++++
T Consensus 78 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~~rl~la~al~~~p~~ll 146 (195)
T PRK13541 78 NLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLL-----------DEKCYSLSSGMQKIVAIARLIACQSDLWL 146 (195)
T ss_pred CcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhh-----------ccChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8754 678999999875432 234556666666665433 25677999999999999999999999999
Q ss_pred EeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEE
Q 000680 743 FDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRI 788 (1354)
Q Consensus 743 LDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i 788 (1354)
|||||++||+.+.+.+.+.+.....+++|+|++||+++.++.+|-+
T Consensus 147 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~ 192 (195)
T PRK13541 147 LDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQIL 192 (195)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhhee
Confidence 9999999999999988776543445689999999999999998865
No 357
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=3.9e-32 Score=296.10 Aligned_cols=180 Identities=25% Similarity=0.315 Sum_probs=148.0
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~i~y 662 (1354)
++++|+++.|+. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEE
Confidence 468899999963 4689999999999999999999999999999999999999999999877 3799
Q ss_pred EeCCCCCC-CCcHHHHHhcCCCC---CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000680 663 VSQTSWIQ-SGSIRDNILYGKPM---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1354)
Q Consensus 663 v~Q~~~~~-~~ti~eni~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~ 738 (1354)
++|++.++ +.|++||+.+.... ++++..++++..++.+.++ .+..+||||||||++||||++++|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFED-----------LPAAQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhc-----------CChhhcCHHHHHHHHHHHHHhcCC
Confidence 99998765 47999999764321 2334566666666654432 456789999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEE
Q 000680 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRIL 789 (1354)
Q Consensus 739 ~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~ 789 (1354)
++++|||||++||+.+.+.+.+.+.....+|+|+|++||+...+.. ++++
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~-~~~~ 196 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLVE-AREL 196 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccccc-eEEe
Confidence 9999999999999999998877665544568899999999854332 4443
No 358
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-32 Score=340.14 Aligned_cols=198 Identities=18% Similarity=0.349 Sum_probs=158.9
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~ 659 (1354)
.++++|+++.|. .+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| .
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 589999998652 379999999999999999999999999999999999999999999876 3
Q ss_pred EEEEeCCC----CCCCCcHHHHHhcCCCC------------CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChH
Q 000680 660 IAYVSQTS----WIQSGSIRDNILYGKPM------------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1354)
Q Consensus 660 i~yv~Q~~----~~~~~ti~eni~~g~~~------------~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgG 723 (1354)
++|++|++ .+.+.|++||+.++... ...... ....+-++.+.... .....+..+||||
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~-~~~~~~~~~LSgG 413 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQ-----RTAENQRELLALKC-HSVNQNITELSGG 413 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHH-----HHHHHHHHhcCCCC-CCccCccccCChH
Confidence 89999984 34467999999876321 111100 11122233332210 0134667899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecCh
Q 000680 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1354)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1354)
|||||+||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++|||++.+.. ||++++|++|++++.++.
T Consensus 414 q~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 414 NQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 9999999999999999999999999999999999987665554568999999999998875 899999999999987765
No 359
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.98 E-value=2.4e-32 Score=295.77 Aligned_cols=161 Identities=27% Similarity=0.413 Sum_probs=134.8
Q ss_pred CCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------eEEEEeCCC--CCCCC
Q 000680 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------SIAYVSQTS--WIQSG 672 (1354)
Q Consensus 610 ~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------------~i~yv~Q~~--~~~~~ 672 (1354)
+++|+|+||+|++||+++|+||||||||||+++|+|..+|++|+|.++| .++|++|+| .+++.
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 4689999999999999999999999999999999999999999998865 389999998 46778
Q ss_pred cHHHHHhcCC---CCCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 000680 673 SIRDNILYGK---PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1354)
Q Consensus 673 ti~eni~~g~---~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1354)
|++||+.++. ..+. ++..++++..++.+.. .++..+||||||||++||||++.+|+++||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLR-----------ERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhh-----------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999998752 1222 2344455555554332 24567899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcch
Q 000680 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF 781 (1354)
Q Consensus 746 p~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~ 781 (1354)
||++||+.+.+.+.+.+.....+|+|+|++||++++
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999999887765554568999999999875
No 360
>PLN03211 ABC transporter G-25; Provisional
Probab=99.98 E-value=5.6e-32 Score=341.53 Aligned_cols=191 Identities=26% Similarity=0.358 Sum_probs=159.3
Q ss_pred CCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCC--CcEEEEcC---------eEEEEeCCCCCC-CCcHHHH
Q 000680 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI--SGTVNLYG---------SIAYVSQTSWIQ-SGSIRDN 677 (1354)
Q Consensus 610 ~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~--~G~i~~~g---------~i~yv~Q~~~~~-~~ti~en 677 (1354)
+++|+|+|+++++||+++|+|||||||||||++|+|..+|. +|+|.++| ++|||+|++.++ ..||+||
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 160 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRET 160 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHH
Confidence 56999999999999999999999999999999999999885 89999987 389999998876 5699999
Q ss_pred HhcCC------CCCHH----HHHHHHHHhccHHHHhcCCCCCcccccC-CCCCCChHHHHHHHHHHHHhcCCCEEEEeCC
Q 000680 678 ILYGK------PMDKA----RYDKAIKACALDKDINNFDHGDLTEIGQ-RGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1354)
Q Consensus 678 i~~g~------~~~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~-~g~~LSgGQkqRv~lARal~~~~~illLDep 746 (1354)
+.|.. ..+++ +.+++++..+|. +..+|.+|+ .+..||||||||++||||++++|++++||||
T Consensus 161 l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEP 233 (659)
T PLN03211 161 LVFCSLLRLPKSLTKQEKILVAESVISELGLT-------KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 233 (659)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-------hhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCC
Confidence 98742 12222 223333333332 233566765 4678999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcch-h-hhcCEEEEEeCCeEEEecChHHHHh
Q 000680 747 FSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF-L-SEVDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 747 ~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~-l-~~~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
|++||+.++.++.+.+.+...+|+|+|++||+++. + +.+|+|++|++|++++.|+.+++.+
T Consensus 234 tsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 234 TSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred CCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 99999999999988766555578999999999984 5 4589999999999999999998863
No 361
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.98 E-value=2.3e-32 Score=339.53 Aligned_cols=201 Identities=21% Similarity=0.288 Sum_probs=161.8
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-CCcEEEEcC--------------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-ISGTVNLYG-------------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-~~G~i~~~g-------------- 658 (1354)
.++++|+++.|+.+.+..+|+|+||+|++||+++|+||||||||||+++|+|..+| ++|+|.++|
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 58999999988432224689999999999999999999999999999999999985 899999876
Q ss_pred eEEEEeCCC----CCCCCcHHHHHhcCCC--------CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCCh
Q 000680 659 SIAYVSQTS----WIQSGSIRDNILYGKP--------MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1354)
Q Consensus 659 ~i~yv~Q~~----~~~~~ti~eni~~g~~--------~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSg 722 (1354)
+++|++|++ .+++.|++||+.++.. .+. ++.++.++.+++.. + ....+..+|||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~--~~~~~~~~LSg 406 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT--------A--SPFLPIGRLSG 406 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccC--------C--CccCccccCCH
Confidence 289999996 3456799999987531 111 12223333333211 0 12356778999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecC
Q 000680 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1354)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1354)
|||||++||||++.+|+++||||||++||+.+.+.+++.+.....+|+|+|++|||++++.. ||++++|++|+++..++
T Consensus 407 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~ 486 (500)
T TIGR02633 407 GNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFV 486 (500)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999887665555568999999999999876 89999999999998765
Q ss_pred hHH
Q 000680 802 YQE 804 (1354)
Q Consensus 802 ~~~ 804 (1354)
.++
T Consensus 487 ~~~ 489 (500)
T TIGR02633 487 NHA 489 (500)
T ss_pred ccc
Confidence 443
No 362
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=2.7e-32 Score=285.94 Aligned_cols=205 Identities=23% Similarity=0.390 Sum_probs=176.1
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------eEEEEe
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------SIAYVS 664 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------~i~yv~ 664 (1354)
.+++++++.+++. ..+++|+||++++|++.+++|+||+||||.+++|+|+++|++|+|.++| +|||.|
T Consensus 2 ~L~ie~vtK~Fg~---k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLP 78 (300)
T COG4152 2 ALEIEGVTKSFGD---KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLP 78 (300)
T ss_pred ceEEecchhccCc---eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccCh
Confidence 4789999999974 4699999999999999999999999999999999999999999999998 799999
Q ss_pred CCCCC-CCCcHHHHHhcCC---CCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000680 665 QTSWI-QSGSIRDNILYGK---PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1354)
Q Consensus 665 Q~~~~-~~~ti~eni~~g~---~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1354)
.+.-+ +..||.|-+.|-. .+++...++-+ ...++++.-.+. -.++..+||-|.+|+|.+--|++++|++
T Consensus 79 EERGLy~k~tv~dql~yla~LkGm~~~e~~~~~-----~~wLer~~i~~~--~~~kIk~LSKGnqQKIQfisaviHePeL 151 (300)
T COG4152 79 EERGLYPKMTVEDQLKYLAELKGMPKAEIQKKL-----QAWLERLEIVGK--KTKKIKELSKGNQQKIQFISAVIHEPEL 151 (300)
T ss_pred hhhccCccCcHHHHHHHHHHhcCCcHHHHHHHH-----HHHHHhcccccc--ccchHHHhhhhhhHHHHHHHHHhcCCCE
Confidence 99766 5789999998732 24444333332 233444433222 1367889999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 741 llLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
++||||||||||.+.+.+-+.++....+|+|||++||+++.++. ||++++|++|+.+-+|+.+++.++
T Consensus 152 lILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~ 220 (300)
T COG4152 152 LILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRS 220 (300)
T ss_pred EEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHh
Confidence 99999999999999999888888888899999999999999987 999999999999999999998764
No 363
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.98 E-value=4.5e-32 Score=336.66 Aligned_cols=196 Identities=22% Similarity=0.344 Sum_probs=160.6
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~ 659 (1354)
.++++|+++. .+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| .
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 5788888742 489999999999999999999999999999999999999999999876 2
Q ss_pred EEEEeCCC----CCCCCcHHHHHhcCCCC---------CH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCCh
Q 000680 660 IAYVSQTS----WIQSGSIRDNILYGKPM---------DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1354)
Q Consensus 660 i~yv~Q~~----~~~~~ti~eni~~g~~~---------~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSg 722 (1354)
++|++|++ .+.+.|+.||+.++... +. ++.++.++.+++.. + ....+..+|||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~--~~~~~~~~LSg 399 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKT--------P--SREQLIMNLSG 399 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCccc--------C--CccCccccCCH
Confidence 79999997 34568999999875310 11 12223333333311 1 12356789999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecC
Q 000680 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1354)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1354)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+|.|+|+||||++++.. ||++++|++|++++.|+
T Consensus 400 Gq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~ 479 (501)
T PRK11288 400 GNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELA 479 (501)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999987665555568999999999999876 89999999999999998
Q ss_pred hHHHH
Q 000680 802 YQELL 806 (1354)
Q Consensus 802 ~~~l~ 806 (1354)
.+++.
T Consensus 480 ~~~~~ 484 (501)
T PRK11288 480 REQAT 484 (501)
T ss_pred cccCC
Confidence 87654
No 364
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.98 E-value=1.1e-31 Score=295.15 Aligned_cols=184 Identities=18% Similarity=0.224 Sum_probs=148.3
Q ss_pred cceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEE-EcCeEEEEeCCCCCCC-CcHHHHHhcCC---CCCH
Q 000680 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN-LYGSIAYVSQTSWIQS-GSIRDNILYGK---PMDK 686 (1354)
Q Consensus 612 ~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~-~~g~i~yv~Q~~~~~~-~ti~eni~~g~---~~~~ 686 (1354)
+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|. ++|....+.|++.+++ .|++||+.+.. ..+.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~ 81 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDG 81 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCH
Confidence 68999999999999999999999999999999999999999997 7776444556666654 69999998642 2333
Q ss_pred HHHHHHH-HHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHH
Q 000680 687 ARYDKAI-KACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765 (1354)
Q Consensus 687 ~~~~~~~-~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~ 765 (1354)
++..+.+ +..++... ...+...||||||||++||||++.+|+++|||||++++|+.+.+.+.+.+.+.
T Consensus 82 ~~~~~~~~~~~~l~~~-----------~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~ 150 (213)
T PRK15177 82 DEFSHFCYQLTQLEQC-----------YTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQ 150 (213)
T ss_pred HHHHHHHHHHhChhHH-----------hhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHH
Confidence 3322222 22222211 12456789999999999999999999999999999999999999887755443
Q ss_pred hcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 766 ALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 766 ~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
.+++|+|++||+++.+.. ||++++|++|++++.|+.++..+
T Consensus 151 -~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 192 (213)
T PRK15177 151 -LQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATA 192 (213)
T ss_pred -hhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHH
Confidence 356799999999999875 89999999999999999888753
No 365
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.98 E-value=5.2e-32 Score=336.08 Aligned_cols=194 Identities=23% Similarity=0.404 Sum_probs=159.6
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~ 659 (1354)
.++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 588888873 369999999999999999999999999999999999999999999876 2
Q ss_pred EEEEeCCC---CC-CCCcHHHHHhcCCC---------CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCCh
Q 000680 660 IAYVSQTS---WI-QSGSIRDNILYGKP---------MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1354)
Q Consensus 660 i~yv~Q~~---~~-~~~ti~eni~~g~~---------~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSg 722 (1354)
+||++|+| .+ ++.|++||+.++.. .+. ++.+++++.+++.. + ..++++.+|||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~--~~~~~~~~LSg 398 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT--------P--SMEQAIGLLSG 398 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCC--------C--CccCchhhCCH
Confidence 89999997 23 56799999987521 111 11222333332210 1 13467789999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecC
Q 000680 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1354)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1354)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++|||++++.. ||+|++|++|+++..|+
T Consensus 399 Gekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~ 478 (501)
T PRK10762 399 GNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFT 478 (501)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999988766655568999999999999876 89999999999999998
Q ss_pred hHHH
Q 000680 802 YQEL 805 (1354)
Q Consensus 802 ~~~l 805 (1354)
.+++
T Consensus 479 ~~~~ 482 (501)
T PRK10762 479 REQA 482 (501)
T ss_pred cccC
Confidence 7765
No 366
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.97 E-value=3.4e-31 Score=305.06 Aligned_cols=207 Identities=23% Similarity=0.367 Sum_probs=144.4
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCCCCCC
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQS 671 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~i~yv~Q~~~~~~ 671 (1354)
...|.++|.++++.. .+.++|..|++.+|+.++|+|+|||||||+|++|.|-..|..-++. +....++.---.
T Consensus 73 s~dvk~~sls~s~~g---~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d----~y~ls~e~~ps~ 145 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHG---VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHID----FYLLSREIEPSE 145 (614)
T ss_pred cccceeeeeeeccCC---ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccc----hhhhcccCCCch
Confidence 346899999999874 5689999999999999999999999999999999998888554432 233334321111
Q ss_pred C-cHHHHHhcCCC------CCHHHHHHHHHHhc---cHH---HHh--------------cCCCC-CcccccCCCCCCChH
Q 000680 672 G-SIRDNILYGKP------MDKARYDKAIKACA---LDK---DIN--------------NFDHG-DLTEIGQRGLNLSGG 723 (1354)
Q Consensus 672 ~-ti~eni~~g~~------~~~~~~~~~~~~~~---l~~---~l~--------------~l~~g-d~t~ig~~g~~LSgG 723 (1354)
. +++.-+.+... +..++|...++... +.. -++ ....| ......++..+||||
T Consensus 146 ~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgG 225 (614)
T KOG0927|consen 146 KQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGG 225 (614)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCch
Confidence 1 33333222110 00111111111000 000 000 00111 112234677899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCc-EEEEEcCCcchhhh-cCEEEEEeCCe-EEEec
Q 000680 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQVEFLSE-VDRILVLEGGQ-ITQSG 800 (1354)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~-tvilvtH~~~~l~~-~d~i~~l~~G~-i~~~g 800 (1354)
||.|++|||||..+|++|||||||++||.....++-+.+.. .++ ++|+++|..++++. |.+|+-|++++ +.+.|
T Consensus 226 wrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k---~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~G 302 (614)
T KOG0927|consen 226 WRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAK---YDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEG 302 (614)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHh---ccCceEEEEecchhhhhhHhhhhheecccceeeecC
Confidence 99999999999999999999999999999999998654432 234 89999999999998 89999999999 67899
Q ss_pred ChHHHHhc
Q 000680 801 NYQELLLA 808 (1354)
Q Consensus 801 ~~~~l~~~ 808 (1354)
+|+++...
T Consensus 303 nydqy~~t 310 (614)
T KOG0927|consen 303 NYDQYVKT 310 (614)
T ss_pred CHHHHhhH
Confidence 99998753
No 367
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=1.1e-31 Score=291.84 Aligned_cols=190 Identities=25% Similarity=0.328 Sum_probs=159.7
Q ss_pred cEEEEeeEEEeCCCC------CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeE-EEEeCC
Q 000680 594 SVKIQEGNFSWDPEL------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSI-AYVSQT 666 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~------~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~i-~yv~Q~ 666 (1354)
-++++|.+..|+... ...+++||||+|++||.++|||.|||||||+-++|+|+++|++|+|.++|+= .-..
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 467888888887532 1468999999999999999999999999999999999999999999998852 1111
Q ss_pred CCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCC
Q 000680 667 SWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1354)
Q Consensus 667 ~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep 746 (1354)
.....+++.+.++..++.++.. .+.+.+|||||||||++|||+.-+|+++++|||
T Consensus 82 ---------------~~~~~~~v~elL~~Vgl~~~~~----------~ryPhelSGGQrQRi~IARALal~P~liV~DEp 136 (268)
T COG4608 82 ---------------KEERRERVLELLEKVGLPEEFL----------YRYPHELSGGQRQRIGIARALALNPKLIVADEP 136 (268)
T ss_pred ---------------hhHHHHHHHHHHHHhCCCHHHh----------hcCCcccCchhhhhHHHHHHHhhCCcEEEecCc
Confidence 1123456778888888776543 356779999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHHHh-cCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhcCc
Q 000680 747 FSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAGT 810 (1354)
Q Consensus 747 ~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1354)
+|+||..++.+|.+.+.... ..|-|.+++|||++.+.+ +|+|.||..|+|++.|+.+++..+..
T Consensus 137 vSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~ 202 (268)
T COG4608 137 VSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPL 202 (268)
T ss_pred hhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCC
Confidence 99999999999887655443 348899999999999998 79999999999999999999987643
No 368
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.97 E-value=2.6e-31 Score=273.63 Aligned_cols=141 Identities=32% Similarity=0.507 Sum_probs=129.4
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCCCCCC
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSG 672 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~~~~~~~ 672 (1354)
++++|+++.|+. .++++++||++++||+++|+|+||||||||+++|.|+.+|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~------- 70 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ------- 70 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc-------
Confidence 468899999964 3699999999999999999999999999999999999999999999998 5899998
Q ss_pred cHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCH
Q 000680 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752 (1354)
Q Consensus 673 ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~ 752 (1354)
||||||||++||||++++|++++||||+++||+
T Consensus 71 -----------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~ 103 (144)
T cd03221 71 -----------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDL 103 (144)
T ss_pred -----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCe
Q 000680 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1354)
Q Consensus 753 ~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1354)
.+.+.+.+.+.. . ++|+|++||+++.+.. +|++++|++|+
T Consensus 104 ~~~~~l~~~l~~-~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 104 ESIEALEEALKE-Y--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHHHHHHH-c--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 999988765433 2 4799999999999876 79999999986
No 369
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.97 E-value=1.3e-31 Score=312.85 Aligned_cols=171 Identities=30% Similarity=0.405 Sum_probs=143.7
Q ss_pred EECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEEeCCCCCC-CCcHHHHHhcCCC---CCH----HH
Q 000680 628 VCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYVSQTSWIQ-SGSIRDNILYGKP---MDK----AR 688 (1354)
Q Consensus 628 ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i~yv~Q~~~~~-~~ti~eni~~g~~---~~~----~~ 688 (1354)
|+||||||||||+++|+|+++|++|+|.++| +++|++|++.++ +.|++||+.|+.. .+. ++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 6899999999999999999999999999987 389999998876 4699999998642 222 23
Q ss_pred HHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-
Q 000680 689 YDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL- 767 (1354)
Q Consensus 689 ~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~- 767 (1354)
.+++++.+++.+.+ .++..+|||||||||+||||++++|+++||||||++||+.+.+.+.+.+.....
T Consensus 81 ~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~ 149 (325)
T TIGR01187 81 VLEALRLVQLEEFA-----------DRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149 (325)
T ss_pred HHHHHHHcCCcchh-----------cCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 44455555554322 356678999999999999999999999999999999999999998877665444
Q ss_pred CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhcC
Q 000680 768 EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 768 ~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
.|+|+|+|||+++++.. ||+|++|++|++++.|+++++.+..
T Consensus 150 ~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~ 192 (325)
T TIGR01187 150 LGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEP 192 (325)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 38999999999998765 8999999999999999999997653
No 370
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=6.2e-31 Score=329.72 Aligned_cols=200 Identities=22% Similarity=0.342 Sum_probs=164.2
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCC-CC
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTS-WI 669 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~~-~~ 669 (1354)
..++++|+++.|+. +++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.+.+ ++||+||++ .+
T Consensus 323 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~ 399 (556)
T PRK11819 323 KVIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDAL 399 (556)
T ss_pred eEEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhc
Confidence 46999999999963 4699999999999999999999999999999999999999999999965 599999996 44
Q ss_pred -CCCcHHHHHhcCCCC-----CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEE
Q 000680 670 -QSGSIRDNILYGKPM-----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLF 743 (1354)
Q Consensus 670 -~~~ti~eni~~g~~~-----~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illL 743 (1354)
.+.|++||+.++... .+.+.+..++..++..+. ...+..+||||||||++||||++.+|+++||
T Consensus 400 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~la~al~~~p~lllL 469 (556)
T PRK11819 400 DPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGD----------QQKKVGVLSGGERNRLHLAKTLKQGGNVLLL 469 (556)
T ss_pred CCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhH----------hcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 457999999876321 122233344444442211 2356779999999999999999999999999
Q ss_pred eCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeC-CeEE-EecChHHHHhc
Q 000680 744 DDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEG-GQIT-QSGNYQELLLA 808 (1354)
Q Consensus 744 Dep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~-G~i~-~~g~~~~l~~~ 808 (1354)
||||++||+.+.+.+.+.+.. . + .|+|+||||++++.. ||+|++|++ |++. ..|+++++.+.
T Consensus 470 DEPt~~LD~~~~~~l~~~l~~-~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 470 DEPTNDLDVETLRALEEALLE-F-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred cCCCCCCCHHHHHHHHHHHHh-C-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 999999999999998875543 2 3 499999999999876 899999986 7886 58999988654
No 371
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=5.1e-31 Score=330.50 Aligned_cols=199 Identities=22% Similarity=0.347 Sum_probs=162.9
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCC-C
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSW-I 669 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~~~-~ 669 (1354)
..++++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.+++ +|||++|++. +
T Consensus 321 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~ 397 (552)
T TIGR03719 321 KVIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDAL 397 (552)
T ss_pred eEEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCcccc
Confidence 46999999999963 4699999999999999999999999999999999999999999999865 5999999963 4
Q ss_pred -CCCcHHHHHhcCCCC---C--HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEE
Q 000680 670 -QSGSIRDNILYGKPM---D--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLF 743 (1354)
Q Consensus 670 -~~~ti~eni~~g~~~---~--~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illL 743 (1354)
.+.|++||+.++... . +.+.++.++.+++..+. ...+..+|||||||||+||||++.+|+++||
T Consensus 398 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGe~qrv~la~al~~~p~lllL 467 (552)
T TIGR03719 398 DPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSD----------QQKKVGQLSGGERNRVHLAKTLKSGGNVLLL 467 (552)
T ss_pred CCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhH----------hcCchhhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 457999999886421 1 22233444444443211 2356778999999999999999999999999
Q ss_pred eCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeC-CeEE-EecChHHHHh
Q 000680 744 DDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEG-GQIT-QSGNYQELLL 807 (1354)
Q Consensus 744 Dep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~-G~i~-~~g~~~~l~~ 807 (1354)
||||++||+.+.+.+.+.+... . .|+|+||||++++.. ||+|++|++ |++. ..|+++++.+
T Consensus 468 DEPt~~LD~~~~~~l~~~l~~~--~-~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 468 DEPTNDLDVETLRALEEALLEF--A-GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred eCCCCCCCHHHHHHHHHHHHHC--C-CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 9999999999999988755432 3 499999999999876 899999987 5876 6788887754
No 372
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.97 E-value=1.4e-31 Score=332.28 Aligned_cols=195 Identities=19% Similarity=0.356 Sum_probs=158.5
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~ 659 (1354)
.++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 588888873 159999999999999999999999999999999999999999999876 3
Q ss_pred EEEEeCCC----CCCCCcHHHHHhcCC----CC--CH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 660 IAYVSQTS----WIQSGSIRDNILYGK----PM--DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 660 i~yv~Q~~----~~~~~ti~eni~~g~----~~--~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
++|+||++ ...+.|+.||+.... .. .. ++.++.++.+++.. .....+..+||||||
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~k 409 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKF----------NHAEQAARTLSGGNQ 409 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCC----------CCccCccccCCcHHH
Confidence 89999985 334569999986320 11 11 11222333332210 113466789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
||++||||++.+|++|||||||++||+.+.+.+.+.+.....+|+|+|+||||++++.. ||++++|++|+++..|+.++
T Consensus 410 qrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~ 489 (510)
T PRK15439 410 QKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAA 489 (510)
T ss_pred HHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999988766555568999999999999876 89999999999999998876
Q ss_pred HH
Q 000680 805 LL 806 (1354)
Q Consensus 805 l~ 806 (1354)
+.
T Consensus 490 ~~ 491 (510)
T PRK15439 490 IN 491 (510)
T ss_pred CC
Confidence 64
No 373
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.5e-31 Score=333.59 Aligned_cols=199 Identities=20% Similarity=0.387 Sum_probs=164.5
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCC--
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTS-- 667 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~~-- 667 (1354)
+..|+++|+++.|+. .++|+|+||+|++|++++|+|||||||||||++|+|+.+|++|+|.+.+ ++||++|++
T Consensus 310 ~~~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~ 386 (638)
T PRK10636 310 NPLLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLE 386 (638)
T ss_pred CceEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchh
Confidence 446999999999963 4699999999999999999999999999999999999999999999864 699999975
Q ss_pred CC-CCCcHHHHHhc-CCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 000680 668 WI-QSGSIRDNILY-GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1354)
Q Consensus 668 ~~-~~~ti~eni~~-g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1354)
.+ .+.|+.+++.. .....+++..++++.+++..+. ...+..+|||||||||+||||++++|+++||||
T Consensus 387 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~----------~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDE 456 (638)
T PRK10636 387 FLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDK----------VTEETRRFSGGEKARLVLALIVWQRPNLLLLDE 456 (638)
T ss_pred hCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhH----------hcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 23 34588888742 2122334455566666553221 125667899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEE-EecChHHHH
Q 000680 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSGNYQELL 806 (1354)
Q Consensus 746 p~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~g~~~~l~ 806 (1354)
||++||+.+.+.+.+.+.. . . .|+|+||||++++.. ||+|++|++|+++ +.|+++++.
T Consensus 457 Pt~~LD~~~~~~l~~~L~~-~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 457 PTNHLDLDMRQALTEALID-F-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CCCCCCHHHHHHHHHHHHH-c-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 9999999999998765543 3 4 499999999999976 8999999999997 789999985
No 374
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=9.7e-31 Score=332.28 Aligned_cols=200 Identities=24% Similarity=0.376 Sum_probs=162.9
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCC--
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTS-- 667 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~~-- 667 (1354)
+..++++|++++|+. .++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+.. +|||++|++
T Consensus 317 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~ 393 (635)
T PRK11147 317 KIVFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAE 393 (635)
T ss_pred CceEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccc
Confidence 346899999999963 4699999999999999999999999999999999999999999999843 599999985
Q ss_pred CCCCCcHHHHHhcCCC-C--C--HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEE
Q 000680 668 WIQSGSIRDNILYGKP-M--D--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742 (1354)
Q Consensus 668 ~~~~~ti~eni~~g~~-~--~--~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ill 742 (1354)
...+.|+.||+.++.. . + ..+..+.++.+++..+. ...+..+||||||||++||||++.+|++||
T Consensus 394 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGekqRl~la~al~~~p~lLl 463 (635)
T PRK11147 394 LDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKR----------AMTPVKALSGGERNRLLLARLFLKPSNLLI 463 (635)
T ss_pred cCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHH----------HhChhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 3356799999987532 1 1 22333444444443211 225667899999999999999999999999
Q ss_pred EeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEe-CCeEE-EecChHHHHh
Q 000680 743 FDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLE-GGQIT-QSGNYQELLL 807 (1354)
Q Consensus 743 LDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~-~G~i~-~~g~~~~l~~ 807 (1354)
|||||++||+.+.+.+.+.+ ... +.|+|+||||++++.. ||+|++|+ +|++. +.|+|+++++
T Consensus 464 LDEPt~~LD~~~~~~l~~~l-~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 464 LDEPTNDLDVETLELLEELL-DSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred EcCCCCCCCHHHHHHHHHHH-HhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 99999999999998876543 332 4599999999999976 89999998 89987 5899999853
No 375
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=9.7e-31 Score=290.72 Aligned_cols=207 Identities=22% Similarity=0.378 Sum_probs=171.4
Q ss_pred CcEEEEeeEEEeCCCC--------CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------
Q 000680 593 RSVKIQEGNFSWDPEL--------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~--------~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------ 658 (1354)
..++.+|+...|+-+. ...+.+++||+.++||.++|||.+|||||||-.+|++++++. |+|.+.|
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~ 353 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGL 353 (534)
T ss_pred ceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccccc
Confidence 3466777777665331 234789999999999999999999999999999999999886 9999987
Q ss_pred ----------eEEEEeCCCC---CCCCcHHHHHhcCCCC------CH---HHHHHHHHHhccHHHHhcCCCCCcccccCC
Q 000680 659 ----------SIAYVSQTSW---IQSGSIRDNILYGKPM------DK---ARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1354)
Q Consensus 659 ----------~i~yv~Q~~~---~~~~ti~eni~~g~~~------~~---~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~ 716 (1354)
++-.|+|+|. -+.+||.+-|.-|... +. ++..++++..+|+.... .+.
T Consensus 354 ~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r----------~RY 423 (534)
T COG4172 354 SRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATR----------NRY 423 (534)
T ss_pred ChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHh----------hcC
Confidence 4889999996 3678999988766321 22 34455566667765432 367
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEcCCcchhhh-cCEEEEEeCC
Q 000680 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGG 794 (1354)
Q Consensus 717 g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G 794 (1354)
+.+.||||||||+||||++-+|++++|||||||||..+..++.+.+.... ..|-+-+++|||+..++. ||+|+||++|
T Consensus 424 PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~G 503 (534)
T COG4172 424 PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDG 503 (534)
T ss_pred CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCC
Confidence 78999999999999999999999999999999999999999987665443 347799999999999987 8999999999
Q ss_pred eEEEecChHHHHhcCc
Q 000680 795 QITQSGNYQELLLAGT 810 (1354)
Q Consensus 795 ~i~~~g~~~~l~~~~~ 810 (1354)
+|+|+|+.+++.+++.
T Consensus 504 kiVE~G~~~~if~~P~ 519 (534)
T COG4172 504 KIVEQGPTEAVFANPQ 519 (534)
T ss_pred EEeeeCCHHHHhcCCC
Confidence 9999999999987654
No 376
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=1.2e-30 Score=330.89 Aligned_cols=198 Identities=25% Similarity=0.406 Sum_probs=163.6
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCCCC
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQ 670 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~~~~~ 670 (1354)
..++++|+++.|+.+ .++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++ +|||++|++. .
T Consensus 507 ~~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~-~ 583 (718)
T PLN03073 507 PIISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHV-D 583 (718)
T ss_pred ceEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEecccc-c
Confidence 469999999999632 3589999999999999999999999999999999999999999999876 5999999873 3
Q ss_pred CCcHHHHHhc-----CCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 000680 671 SGSIRDNILY-----GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1354)
Q Consensus 671 ~~ti~eni~~-----g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1354)
..++.+|... .....+++++++++.+++..+.. ..++.+||||||||++||||++.+|+++||||
T Consensus 584 ~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~----------~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDE 653 (718)
T PLN03073 584 GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKKPHILLLDE 653 (718)
T ss_pred cCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHh----------cCCccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3455555431 11234566777777777754322 24567899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEE-EecChHHHH
Q 000680 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSGNYQELL 806 (1354)
Q Consensus 746 p~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~g~~~~l~ 806 (1354)
||++||+.+.+.+.+.+.. . + .|+|+||||++++.. ||++++|++|+++ ..|+++++.
T Consensus 654 PT~~LD~~s~~~l~~~L~~-~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 654 PSNHLDLDAVEALIQGLVL-F-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred CCCCCCHHHHHHHHHHHHH-c-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 9999999999988765432 2 3 499999999999986 8999999999998 788888764
No 377
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=7.3e-31 Score=327.50 Aligned_cols=193 Identities=23% Similarity=0.315 Sum_probs=163.3
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCCCC-CC
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWI-QS 671 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~i~yv~Q~~~~-~~ 671 (1354)
..++++|+++.|+. ..|+++|++|++||+++|+||||||||||+++|+|+++|++|+|.++-+++|+||++.. ++
T Consensus 339 ~~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~ 414 (590)
T PRK13409 339 TLVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYD 414 (590)
T ss_pred eEEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCC
Confidence 45899999999963 24999999999999999999999999999999999999999999987789999999754 57
Q ss_pred CcHHHHHhcCCC-CC-HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 000680 672 GSIRDNILYGKP-MD-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749 (1354)
Q Consensus 672 ~ti~eni~~g~~-~~-~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~ 749 (1354)
.|++||+.++.. +. +....++++..++.+..+ ....+|||||||||+||||+.++|++|||||||++
T Consensus 415 ~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~-----------~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~ 483 (590)
T PRK13409 415 GTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLD-----------KNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAH 483 (590)
T ss_pred CcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHh-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 899999987532 22 234456677777654332 56678999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecC
Q 000680 750 VDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1354)
Q Consensus 750 lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1354)
||+.+...+.+.+..... .|+|+|+||||++++.. ||++++|++ ++...|+
T Consensus 484 LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 484 LDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 999999998876655444 48899999999999876 899999965 7877776
No 378
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.97 E-value=1.2e-30 Score=331.57 Aligned_cols=202 Identities=25% Similarity=0.385 Sum_probs=169.5
Q ss_pred cEEEEeeEEEeCCCC-CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000680 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------- 658 (1354)
.++++|+++.|+... ..++|+|+||++++||+++|+|+||||||||+++|+|+++|++|++.++|
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 488999999996422 24699999999999999999999999999999999999999999998876
Q ss_pred ---eEEEEeCCCCCCC-CcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 000680 659 ---SIAYVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1354)
Q Consensus 659 ---~i~yv~Q~~~~~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1354)
.++|++|++.+++ .|+.||+.++.. .. +++..+.++.+++.+. +..++.+||||||||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~-----------~~~~~~~LS~Gq~qr 152 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDR-----------VEYQPSQLSGGQQQR 152 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hcCCcccCCHHHHHH
Confidence 3799999998764 699999986421 11 1233444555555433 235667899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHH
Q 000680 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806 (1354)
Q Consensus 728 v~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 806 (1354)
++||||++++|++++|||||++||+.+.+.+.+.+.+...+++|+|++||+++.+..||++++|++|+++++|+.++..
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 9999999999999999999999999999998876654444689999999999988889999999999999999988764
No 379
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=1.5e-30 Score=276.95 Aligned_cols=188 Identities=27% Similarity=0.362 Sum_probs=165.2
Q ss_pred CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCC--CCCCCcHHHHHhc-----C
Q 000680 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTS--WIQSGSIRDNILY-----G 681 (1354)
Q Consensus 609 ~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~i~yv~Q~~--~~~~~ti~eni~~-----g 681 (1354)
...+|+||||++.+||.++|+|+|||||||||+.|.|.++|++|+|.++|+|++.-.-. ..++.|.||||.+ |
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G 118 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILG 118 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhC
Confidence 34689999999999999999999999999999999999999999999999999766543 3457799999975 2
Q ss_pred CC--CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHH
Q 000680 682 KP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLF 759 (1354)
Q Consensus 682 ~~--~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~ 759 (1354)
.. ..+++++++++-..|.+.++ .+..+.|-|++.|+++|-|...+|||||+||.++.-|+.-.++-.
T Consensus 119 ~~~~ei~~~~~eIieFaELG~fi~-----------~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~ 187 (249)
T COG1134 119 LTRKEIDEKVDEIIEFAELGDFID-----------QPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL 187 (249)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhh-----------CchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHH
Confidence 22 23567888888888877665 567899999999999999999999999999999999999888876
Q ss_pred HHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 760 NECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 760 ~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
+.+.....+++|+|+||||++.+++ ||++++|++|+|...|++++..+
T Consensus 188 ~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 188 ERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred HHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 6665555788999999999999987 99999999999999999999874
No 380
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=7.4e-31 Score=277.80 Aligned_cols=154 Identities=25% Similarity=0.291 Sum_probs=133.5
Q ss_pred EeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-eEEEEeCCCCCCCCcHHH
Q 000680 598 QEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSWIQSGSIRD 676 (1354)
Q Consensus 598 ~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-~i~yv~Q~~~~~~~ti~e 676 (1354)
.|+++.|+. .++++| ++++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.
T Consensus 4 ~~l~~~~~~---~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~-------- 71 (177)
T cd03222 4 PDCVKRYGV---FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYID-------- 71 (177)
T ss_pred CCeEEEECC---EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCC--------
Confidence 467888863 457888 499999999999999999999999999999999999999998 5899998652
Q ss_pred HHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHH
Q 000680 677 NILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAA 756 (1354)
Q Consensus 677 ni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~ 756 (1354)
||||||||++||||++.+|++++|||||++||+++.+
T Consensus 72 -------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~ 108 (177)
T cd03222 72 -------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRL 108 (177)
T ss_pred -------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC-cEEEEEcCCcchhhh-cCEEEEEeCCeEEEe--cChHHHH
Q 000680 757 TLFNECVMAALEK-KTVILVTHQVEFLSE-VDRILVLEGGQITQS--GNYQELL 806 (1354)
Q Consensus 757 ~i~~~~~~~~~~~-~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~--g~~~~l~ 806 (1354)
.+.+.+.....++ +|+|++||+++++.. ||++++|+++-.+.+ |.+...+
T Consensus 109 ~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 162 (177)
T cd03222 109 NAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTR 162 (177)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcchh
Confidence 9887665544454 899999999999885 899999998866543 5544433
No 381
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.97 E-value=9e-31 Score=324.54 Aligned_cols=194 Identities=24% Similarity=0.371 Sum_probs=156.7
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-CCcEEEEcC-------------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-ISGTVNLYG------------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-~~G~i~~~g------------- 658 (1354)
..++++|+++.|+. ..+|+|+||++++||+++|+||||||||||+++|+|+.++ ++|+|.++|
T Consensus 259 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~ 335 (490)
T PRK10938 259 PRIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIK 335 (490)
T ss_pred ceEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHH
Confidence 46999999999963 3589999999999999999999999999999999998876 699998865
Q ss_pred -eEEEEeCCCCC-C--CCcHHHHHhcCCC--------CC---HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChH
Q 000680 659 -SIAYVSQTSWI-Q--SGSIRDNILYGKP--------MD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1354)
Q Consensus 659 -~i~yv~Q~~~~-~--~~ti~eni~~g~~--------~~---~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgG 723 (1354)
+++|++|++.+ + ..++++++.++.. .. +++.++.++.+++..+. ...++.+||||
T Consensus 336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG 405 (490)
T PRK10938 336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRT----------ADAPFHSLSWG 405 (490)
T ss_pred hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhh----------ccCchhhCCHH
Confidence 28999999754 2 2477777754310 11 12345555555554311 12566789999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCc-EEEEEcCCcchhhh--cCEEEEEeCCeEEEe
Q 000680 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQVEFLSE--VDRILVLEGGQITQS 799 (1354)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~-tvilvtH~~~~l~~--~d~i~~l~~G~i~~~ 799 (1354)
||||++||||++.+|+++||||||++||+++.+.+.+.+.....+++ |+|+||||++++.. +|++++|++|+|++.
T Consensus 406 q~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 406 QQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 99999999999999999999999999999999999876665544554 69999999999874 699999999998764
No 382
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.3e-30 Score=323.05 Aligned_cols=201 Identities=21% Similarity=0.334 Sum_probs=157.8
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe-------------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~------------- 659 (1354)
..|+++|+++.+ +++|+|+||++++||+++|+||||||||||+++|.|+.+|++|+|.++|.
T Consensus 249 ~~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 323 (491)
T PRK10982 249 VILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH 323 (491)
T ss_pred cEEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHC
Confidence 368999999873 24899999999999999999999999999999999999999999999861
Q ss_pred -EEEEeCCCC----CCCCcHHHHHhcC-----CC----CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 660 -IAYVSQTSW----IQSGSIRDNILYG-----KP----MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 660 -i~yv~Q~~~----~~~~ti~eni~~g-----~~----~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
++|++|++- +.+.|+.+|+.+. .. .+....++ ...+.++.+..++. ....+..+||||||
T Consensus 324 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~-~~~~~~~~LSgGq~ 397 (491)
T PRK10982 324 GFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS-----DTQWVIDSMRVKTP-GHRTQIGSLSGGNQ 397 (491)
T ss_pred CCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH-----HHHHHHHhcCccCC-CcccccccCCcHHH
Confidence 899999852 3456777774322 11 11111111 11222333322211 13567889999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
||++||||+..+|+++||||||++||+.+.+.+++.+.....+|+|+|++|||++++.. ||++++|++|+++..++.++
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~ 477 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKT 477 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999987665555568999999999999876 89999999999998776543
No 383
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=1.6e-30 Score=292.85 Aligned_cols=186 Identities=23% Similarity=0.290 Sum_probs=148.6
Q ss_pred eeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEE-----------EcC---------
Q 000680 599 EGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN-----------LYG--------- 658 (1354)
Q Consensus 599 ~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~-----------~~g--------- 658 (1354)
|++++|+.. .++|+|+| .+++||+++|+||||||||||+++|+|+++|++|+|. ++|
T Consensus 5 ~~~~~y~~~--~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 5 EPVHRYGPN--SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred CcceeecCc--chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence 678888632 35899999 4999999999999999999999999999999999995 434
Q ss_pred ------eEEEEeCCCCCCCCcHHHHHhcCCC--CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 659 ------SIAYVSQTSWIQSGSIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 659 ------~i~yv~Q~~~~~~~ti~eni~~g~~--~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
.++|++|++..++.++.+|+.+... ..+++..++++.+++.+. ...++.+||||||||++|
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv~l 150 (255)
T cd03236 82 LLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHV-----------LDRNIDQLSGGELQRVAI 150 (255)
T ss_pred hhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHH
Confidence 2688899876665667777665321 123445566666655432 235677999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEe
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQS 799 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~ 799 (1354)
|||++.+|++++|||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||+|++|+ |++.+.
T Consensus 151 aral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~ 219 (255)
T cd03236 151 AAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAY 219 (255)
T ss_pred HHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcc
Confidence 999999999999999999999999998877665544458999999999999886 89999995 556543
No 384
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.97 E-value=3.1e-30 Score=349.25 Aligned_cols=204 Identities=22% Similarity=0.332 Sum_probs=170.7
Q ss_pred cEEEEeeEEEeCCC-CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc---CCCcEEEEcC---------eE
Q 000680 594 SVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---KISGTVNLYG---------SI 660 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~-~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~---~~~G~i~~~g---------~i 660 (1354)
.++++|++++++.+ ..+++|+|+|+++++||+++|+|||||||||||++|+|..+ +++|+|.++| .+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i 838 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSI 838 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcce
Confidence 47899999998632 23579999999999999999999999999999999999987 6889999988 38
Q ss_pred EEEeCCCC-CCCCcHHHHHhcCC------CCCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 000680 661 AYVSQTSW-IQSGSIRDNILYGK------PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1354)
Q Consensus 661 ~yv~Q~~~-~~~~ti~eni~~g~------~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1354)
|||+|++. +++.||+||+.|+. ..++ ++.+++++..+|.+. .++.+|+.+.+||||||||++
T Consensus 839 ~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~-------~d~~v~~~~~~LSgGqrqRl~ 911 (1394)
T TIGR00956 839 GYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESY-------ADAVVGVPGEGLNVEQRKRLT 911 (1394)
T ss_pred eeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh-------CCCeeCCCCCCCCHHHhhHHH
Confidence 99999865 56789999999752 1222 233455555555432 356788888899999999999
Q ss_pred HHHHHhcCCC-EEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchh--hhcCEEEEEeCC-eEEEecChHH
Q 000680 730 LARAVYNDAD-IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFL--SEVDRILVLEGG-QITQSGNYQE 804 (1354)
Q Consensus 730 lARal~~~~~-illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l--~~~d~i~~l~~G-~i~~~g~~~~ 804 (1354)
||||++.+|+ +++||||||+||+.++..+.+.+.+...+|+|+|++|||++.. ..+|++++|++| ++++.|+.++
T Consensus 912 Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 912 IGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred HHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 9999999997 9999999999999999999887766656789999999999863 568999999987 9999998754
No 385
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=3.8e-30 Score=272.10 Aligned_cols=150 Identities=27% Similarity=0.434 Sum_probs=123.0
Q ss_pred CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe--------EEEEeCCCCCCCCcHHHHHhc
Q 000680 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------IAYVSQTSWIQSGSIRDNILY 680 (1354)
Q Consensus 609 ~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~--------i~yv~Q~~~~~~~ti~eni~~ 680 (1354)
.+++|+|+||++++|++++|+|||||||||||+++++ ++|++.+.|. ++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~~~~~~~~~~q--------------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKFSRNKLIFIDQ--------------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcccccccccEEEEhH---------------
Confidence 4578999999999999999999999999999999974 6899887764 334333
Q ss_pred CCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcC--CCEEEEeCCCCCcCHHHHHHH
Q 000680 681 GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND--ADIYLFDDPFSAVDAHTAATL 758 (1354)
Q Consensus 681 g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~--~~illLDep~s~lD~~~~~~i 758 (1354)
.++++..++ ++. ..++++.+||||||||++||||++++ |+++||||||++||++..+.+
T Consensus 68 ---------~~~l~~~~L---------~~~-~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l 128 (176)
T cd03238 68 ---------LQFLIDVGL---------GYL-TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQL 128 (176)
T ss_pred ---------HHHHHHcCC---------Ccc-ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHH
Confidence 223333333 221 13567889999999999999999999 999999999999999999998
Q ss_pred HHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeE
Q 000680 759 FNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1354)
Q Consensus 759 ~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i 796 (1354)
.+.+.....+|+|+|++||+++++..+|++++|++|+.
T Consensus 129 ~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 129 LEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSG 166 (176)
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCC
Confidence 87665544468999999999999888999999977554
No 386
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.6e-30 Score=274.45 Aligned_cols=197 Identities=23% Similarity=0.382 Sum_probs=161.2
Q ss_pred CCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------
Q 000680 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1354)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------ 658 (1354)
.+.-|+++|++..|.. +++|+|||++|++||..+|+|||||||||||+.+.|+.+|++|.+.+.|
T Consensus 28 ~~~li~l~~v~v~r~g---k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~el 104 (257)
T COG1119 28 NEPLIELKNVSVRRNG---KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFEL 104 (257)
T ss_pred CcceEEecceEEEECC---EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHH
Confidence 3456999999999974 5799999999999999999999999999999999999999999998765
Q ss_pred --eEEEEeCC---CCCCCCcHHHHHhcCC---------CCCHHHHHH---HHHHhccHHHHhcCCCCCcccccCCCCCCC
Q 000680 659 --SIAYVSQT---SWIQSGSIRDNILYGK---------PMDKARYDK---AIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1354)
Q Consensus 659 --~i~yv~Q~---~~~~~~ti~eni~~g~---------~~~~~~~~~---~~~~~~l~~~l~~l~~gd~t~ig~~g~~LS 721 (1354)
+||||+-+ -...+.+++|-|+-|. +++++.+++ .++.+++.. ..++.-.+||
T Consensus 105 rk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~-----------la~r~~~~LS 173 (257)
T COG1119 105 RKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH-----------LADRPFGSLS 173 (257)
T ss_pred HHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhh-----------hccCchhhcC
Confidence 48999854 2334668888887442 344444433 333344332 2235668899
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC--CcEEEEEcCCcchhhhc-CEEEEEeCCeEEE
Q 000680 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLSEV-DRILVLEGGQITQ 798 (1354)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~--~~tvilvtH~~~~l~~~-d~i~~l~~G~i~~ 798 (1354)
-||||||-||||++.+|.++|||||+++||....+.+.+.+...... +.|+|+|||+.+.++.| ++++.+++|+++.
T Consensus 174 ~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~ 253 (257)
T COG1119 174 QGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred HhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceee
Confidence 99999999999999999999999999999999998888776655443 78999999999999875 9999999999998
Q ss_pred ecC
Q 000680 799 SGN 801 (1354)
Q Consensus 799 ~g~ 801 (1354)
+|.
T Consensus 254 ~g~ 256 (257)
T COG1119 254 QGK 256 (257)
T ss_pred ccc
Confidence 874
No 387
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=6e-30 Score=263.91 Aligned_cols=189 Identities=28% Similarity=0.391 Sum_probs=154.8
Q ss_pred CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEEEeCCCC---CCCC
Q 000680 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSW---IQSG 672 (1354)
Q Consensus 609 ~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~yv~Q~~~---~~~~ 672 (1354)
++++|+++|++|++|+++.|+|.||||||||+++|.|.+.|++|+|.++| .++-|+|+|- ..+.
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 46799999999999999999999999999999999999999999999988 2788999995 3678
Q ss_pred cHHHHHhcCC----C--CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCC
Q 000680 673 SIRDNILYGK----P--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1354)
Q Consensus 673 ti~eni~~g~----~--~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep 746 (1354)
||.||+.... . +....-.+ ....-.+-+..++.|-+..++.+..-|||||||-++|+.|..+.|+|++|||=
T Consensus 98 TieENl~la~~Rg~~rgl~~~ln~~--~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEH 175 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSALNER--RRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEH 175 (263)
T ss_pred cHHHHHHHHHhcCcccccchhhhHH--HHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecch
Confidence 9999998631 1 11100000 01122344666777777777788889999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchh-hhcCEEEEEeCCeEEEe
Q 000680 747 FSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEVDRILVLEGGQITQS 799 (1354)
Q Consensus 747 ~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~ 799 (1354)
|+||||+++..+++.--+... .+-|.++|||+++.. ..-+|.++|++|+|+.+
T Consensus 176 TAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 176 TAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred hhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEE
Confidence 999999999998876554443 356999999999874 55799999999999964
No 388
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.9e-26 Score=253.08 Aligned_cols=376 Identities=19% Similarity=0.220 Sum_probs=261.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHH
Q 000680 940 VYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAAS 1019 (1354)
Q Consensus 940 iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~ 1019 (1354)
-++++..+..+...+........|.+...+++.++.++++.+|+.-+++-..||++.++++|+.+|... -..+..+.++
T Consensus 53 ~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~-~s~lp~~~qa 131 (546)
T COG4615 53 EFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFA-FSRLPELVQA 131 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeeh-HhhhHHHHHH
Confidence 334444444445556667778889999999999999999999999999999999999999999999832 3344557777
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHH
Q 000680 1020 GTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQN 1099 (1354)
Q Consensus 1020 ~~~~i~~i~v~~~~~~~l~l~~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~ 1099 (1354)
.+..+++++.+++.+|++.++.+..+++..+.+...++..-+-.+...++...+.++++-.++|.+..+......+....
T Consensus 132 ~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~ 211 (546)
T COG4615 132 IILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHN 211 (546)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHh
Confidence 88888999999999999888777666665555444433333333444455667899999999999998876644333222
Q ss_pred HHH------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCccChhHHHHHHHHHHHHHHHHHHHHH
Q 000680 1100 YLK------LVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLI-PRGYVAPGLVGLSLSYAFTLTGTQVFLSR 1172 (1354)
Q Consensus 1100 ~~~------~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~vl~-~~g~ls~g~~gl~l~ya~~l~~~l~~l~~ 1172 (1354)
..- .-++..+..........|-.+.+-.+.. +..++. ..+--+...+.......+.+-+|+..++.
T Consensus 212 ~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIG-------lvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vg 284 (546)
T COG4615 212 NLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIG-------LVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVG 284 (546)
T ss_pred hhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHh
Confidence 111 1111111111222334454433211111 111111 11111111111222233445689999999
Q ss_pred HHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCC
Q 000680 1173 WYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRT 1252 (1354)
Q Consensus 1173 ~~~~le~~~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrT 1252 (1354)
....+-++.++.+||.++..-|+.+. -....+-++| ..||++||.|+|.++. --+.-||++|+.||.|=|+|.+
T Consensus 285 ilP~l~~AqvA~~kiakle~~~~~a~--~~~~q~~p~~---~~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~N 358 (546)
T COG4615 285 ILPTLLTAQVAFNKIAKLELAPYKAD--FPRPQAFPDW---KTLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGN 358 (546)
T ss_pred hhhHHHHHHHHHHHHHHhhcCCcccc--CCCCCcCCcc---cceeeeeeeeccCccc-ceecceeeEEecCcEEEEECCC
Confidence 99999999999999998765322111 1111222234 4699999999997654 3578899999999999999999
Q ss_pred CccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCCCCCCHHHHHHHHHHcCCc
Q 000680 1253 GSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLK 1332 (1354)
Q Consensus 1253 GSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~ 1332 (1354)
||||||++++|.|+|.|++|+|+.||.+++.=++++.|+-++-|.-|-+||+.++ .|.+..+.+-|.+-|++-.+.
T Consensus 359 GsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll----~~e~~as~q~i~~~LqrLel~ 434 (546)
T COG4615 359 GSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL----GPEGKASPQLIEKWLQRLELA 434 (546)
T ss_pred CCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh----CCccCCChHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998765 344446777776666655554
Q ss_pred h
Q 000680 1333 T 1333 (1354)
Q Consensus 1333 ~ 1333 (1354)
.
T Consensus 435 ~ 435 (546)
T COG4615 435 H 435 (546)
T ss_pred h
Confidence 3
No 389
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=5.8e-29 Score=241.53 Aligned_cols=183 Identities=23% Similarity=0.356 Sum_probs=149.4
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEEcC-----------eE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYG-----------SI 660 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~---~G~i~~~g-----------~i 660 (1354)
..++|++..-+ ..-.|.|+|++|.+||++-+.||+|||||||+.-+.|.+.+. +|++.+++ ++
T Consensus 3 l~l~nvsl~l~---g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~ 79 (213)
T COG4136 3 LCLKNVSLRLP---GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQI 79 (213)
T ss_pred eeeeeeeecCC---CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhhe
Confidence 45678886654 345899999999999999999999999999999999998874 78998876 59
Q ss_pred EEEeCCCCCCC-CcHHHHHhcCCCCC------HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 000680 661 AYVSQTSWIQS-GSIRDNILYGKPMD------KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1354)
Q Consensus 661 ~yv~Q~~~~~~-~ti~eni~~g~~~~------~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARa 733 (1354)
|..+|++|+|+ .+|-+|++|..+-+ +...+.+++..+|.....+. +.+||||||.||+|-|+
T Consensus 80 GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~d-----------P~tlSGGQrARvaL~R~ 148 (213)
T COG4136 80 GILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQD-----------PATLSGGQRARVALLRA 148 (213)
T ss_pred eeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcC-----------hhhcCcchHHHHHHHHH
Confidence 99999999875 59999999986632 22344566677776666543 45899999999999999
Q ss_pred HhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEcCCcchhhhcCEEEEE
Q 000680 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRILVL 791 (1354)
Q Consensus 734 l~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l 791 (1354)
+.+.|+.++||||||.||..-+.+..+-++... ..|-.+|+||||.+..+.-.||+-|
T Consensus 149 Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 149 LLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 999999999999999999988877666666543 3578899999999988854565544
No 390
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=3.8e-29 Score=250.30 Aligned_cols=188 Identities=23% Similarity=0.360 Sum_probs=155.1
Q ss_pred CCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEEEeCCCCC-CCCcHH
Q 000680 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWI-QSGSIR 675 (1354)
Q Consensus 610 ~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~yv~Q~~~~-~~~ti~ 675 (1354)
..+.+.+||++++|+..+|+|.||||||||.+.|.|..+|++|+|.++| .|-.++|+|.- +|- |
T Consensus 26 ~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NP--R 103 (267)
T COG4167 26 VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNP--R 103 (267)
T ss_pred hhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccCh--h
Confidence 3578999999999999999999999999999999999999999999987 48999999852 332 2
Q ss_pred HHH----hcC----CCCC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEE
Q 000680 676 DNI----LYG----KPMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLF 743 (1354)
Q Consensus 676 eni----~~g----~~~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illL 743 (1354)
-|| -+. ..++ .++..+.++..+|-+|-.. -++..||-||||||||||||.-+|+|++.
T Consensus 104 l~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan----------~~~~~la~~QKQRVaLARALIL~P~iIIa 173 (267)
T COG4167 104 LRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHAN----------YYPHMLAPGQKQRVALARALILRPKIIIA 173 (267)
T ss_pred hhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccc----------cchhhcCchhHHHHHHHHHHhcCCcEEEe
Confidence 222 111 1222 2345556666677655432 35678999999999999999999999999
Q ss_pred eCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhcC
Q 000680 744 DDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 744 Dep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
||.+.+||...+.++.+..+... ..|-+-|.|+.++..+++ +|+|+||++|+++|.|++.+++..+
T Consensus 174 DeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P 241 (267)
T COG4167 174 DEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASP 241 (267)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCC
Confidence 99999999999999987655543 348899999999999998 7999999999999999999998764
No 391
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.1e-28 Score=258.62 Aligned_cols=142 Identities=39% Similarity=0.599 Sum_probs=126.8
Q ss_pred EEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe-------------EEEE
Q 000680 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-------------IAYV 663 (1354)
Q Consensus 597 ~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~-------------i~yv 663 (1354)
++|++|.|+. .++++++|+++++|++++|+|+||||||||+++|.|+++|.+|+|.++|. ++|+
T Consensus 2 ~~~~~~~~~~---~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~ 78 (157)
T cd00267 2 IENLSFRYGG---RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYV 78 (157)
T ss_pred eEEEEEEeCC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEE
Confidence 6789999964 36999999999999999999999999999999999999999999999873 3444
Q ss_pred eCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEE
Q 000680 664 SQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLF 743 (1354)
Q Consensus 664 ~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illL 743 (1354)
+| ||||||||++||||++.+|++++|
T Consensus 79 ~q------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 79 PQ------------------------------------------------------LSGGQRQRVALARALLLNPDLLLL 104 (157)
T ss_pred ee------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 44 999999999999999999999999
Q ss_pred eCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCe
Q 000680 744 DDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1354)
Q Consensus 744 Dep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1354)
||||++||+.+...+.+.+.....+++|+|++||+++++.. +|++++|++|+
T Consensus 105 DEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 105 DEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 99999999999998877665444446899999999999988 59999999985
No 392
>PLN03140 ABC transporter G family member; Provisional
Probab=99.96 E-value=1.4e-28 Score=331.41 Aligned_cols=204 Identities=24% Similarity=0.372 Sum_probs=167.1
Q ss_pred cEEEEeeEEEeCCC----------CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC--CCcEEEEcC---
Q 000680 594 SVKIQEGNFSWDPE----------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK--ISGTVNLYG--- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~----------~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~--~~G~i~~~g--- 658 (1354)
.+.++|+++..+.. ....+|+|+|+++++|++++|+|||||||||||++|+|..++ .+|+|.++|
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 58899999887532 124699999999999999999999999999999999998763 789999987
Q ss_pred -------eEEEEeCCCCC-CCCcHHHHHhcCC------CCCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCC-CC
Q 000680 659 -------SIAYVSQTSWI-QSGSIRDNILYGK------PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRG-LN 719 (1354)
Q Consensus 659 -------~i~yv~Q~~~~-~~~ti~eni~~g~------~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g-~~ 719 (1354)
.+|||+|++.+ ++.||+||+.|+. ..+. ++.+++++..+|.+.. ++.+|..+ ..
T Consensus 947 ~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~-------~~~vg~~~~~~ 1019 (1470)
T PLN03140 947 KQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLK-------DAIVGLPGVTG 1019 (1470)
T ss_pred ChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHh-------CCccCCCCCCC
Confidence 27999999755 5679999998742 1222 2345666666665432 34555443 68
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcch-h-hhcCEEEEEeC-CeE
Q 000680 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF-L-SEVDRILVLEG-GQI 796 (1354)
Q Consensus 720 LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~-l-~~~d~i~~l~~-G~i 796 (1354)
||||||||++|||||+.+|++++||||||+||++++..+.+.+.+...+|+|+|++|||++. + ..+|++++|++ |++
T Consensus 1020 LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~ 1099 (1470)
T PLN03140 1020 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1099 (1470)
T ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEE
Confidence 99999999999999999999999999999999999999988776666678999999999984 3 56899999986 899
Q ss_pred EEecChHH
Q 000680 797 TQSGNYQE 804 (1354)
Q Consensus 797 ~~~g~~~~ 804 (1354)
++.|+..+
T Consensus 1100 v~~G~~~~ 1107 (1470)
T PLN03140 1100 IYSGPLGR 1107 (1470)
T ss_pred EEECCccc
Confidence 99998754
No 393
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=1.3e-27 Score=290.30 Aligned_cols=202 Identities=26% Similarity=0.418 Sum_probs=171.0
Q ss_pred CCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCC-
Q 000680 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTS- 667 (1354)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~~- 667 (1354)
....++++|++++|+.+ +++++++||.|.+|+.++|+||||+||||||+.|+|...|.+|+|.+.. ++||.+|+.
T Consensus 318 g~~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~ 395 (530)
T COG0488 318 GKLVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRD 395 (530)
T ss_pred CCeeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhh
Confidence 45679999999999754 5799999999999999999999999999999999999999999999865 599999985
Q ss_pred -CCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 000680 668 -WIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1354)
Q Consensus 668 -~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1354)
+..+.|+.|++.-..+ ..+...+..+..+.+..+-. ..+...||||||.|+.||+.+.++|.+|||||
T Consensus 396 ~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~----------~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDE 465 (530)
T COG0488 396 ELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQ----------EKPVGVLSGGEKARLLLAKLLLQPPNLLLLDE 465 (530)
T ss_pred hcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHH----------hCchhhcCHhHHHHHHHHHHhccCCCEEEEcC
Confidence 3456699999987654 33677777888777765543 26678899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEE-ecChHHHHhc
Q 000680 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQ-SGNYQELLLA 808 (1354)
Q Consensus 746 p~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~-~g~~~~l~~~ 808 (1354)
||++||..+...+-+.+ .. -+ -|+|+||||.+|+.. |++++.+++ ++.. .|+|+++.+.
T Consensus 466 PTNhLDi~s~~aLe~aL-~~-f~-Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 466 PTNHLDIESLEALEEAL-LD-FE-GTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred CCccCCHHHHHHHHHHH-Hh-CC-CeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 99999999998875433 22 23 499999999999998 799999999 6665 4999998754
No 394
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=2.7e-28 Score=247.66 Aligned_cols=200 Identities=23% Similarity=0.358 Sum_probs=165.9
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------- 658 (1354)
..++++|++.+++. -.+|+|+||++.+||+-+|+||||+||||++..|.|-.+|+.|+|.++|
T Consensus 4 ~iL~~~~vsVsF~G---F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr 80 (249)
T COG4674 4 IILYLDGVSVSFGG---FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80 (249)
T ss_pred ceEEEeceEEEEcc---eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHH
Confidence 35678899988874 4689999999999999999999999999999999999999999999988
Q ss_pred -eEEEEeCCCCCC-CCcHHHHHhcCCC---------------CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCC
Q 000680 659 -SIAYVSQTSWIQ-SGSIRDNILYGKP---------------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1354)
Q Consensus 659 -~i~yv~Q~~~~~-~~ti~eni~~g~~---------------~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LS 721 (1354)
.||-=+|.|-+| +.||+||+..... ..+++.++++...+|.+.- ......||
T Consensus 81 ~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~-----------~~~A~~LS 149 (249)
T COG4674 81 AGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDER-----------DRLAALLS 149 (249)
T ss_pred hccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhh-----------hhhhhhhc
Confidence 278889999876 6699999965321 1233566666655554322 24457899
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCc-CHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEe
Q 000680 722 GGQKQRIQLARAVYNDADIYLFDDPFSAV-DAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQS 799 (1354)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~s~l-D~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~ 799 (1354)
-||||++.|+.-+.++|++++||||.+++ |.++.+ .- ++++...+++++++|.||++|++. ||+|-||+.|.+..+
T Consensus 150 HGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~-ta-eLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~E 227 (249)
T COG4674 150 HGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEK-TA-ELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAE 227 (249)
T ss_pred cchhhhhhhheeeccCCcEEEecCccCCCcHHHHHH-HH-HHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeec
Confidence 99999999999999999999999999999 555444 33 455666678899999999999987 899999999999999
Q ss_pred cChHHHHhc
Q 000680 800 GNYQELLLA 808 (1354)
Q Consensus 800 g~~~~l~~~ 808 (1354)
|+.+++.++
T Consensus 228 Gsld~v~~d 236 (249)
T COG4674 228 GSLDEVQND 236 (249)
T ss_pred ccHHHhhcC
Confidence 999998654
No 395
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.9e-27 Score=272.85 Aligned_cols=193 Identities=27% Similarity=0.413 Sum_probs=138.6
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEc-------CeEEEEe
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY-------GSIAYVS 664 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~-------g~i~yv~ 664 (1354)
..+|.+.|.+.+|.. +..|++-++++..|-..++||+||+||||||++|.. |.|..- |.--+.-
T Consensus 78 ~~Di~~~~fdLa~G~---k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~ 148 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGG---KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEAL 148 (582)
T ss_pred ccceeeeeeeeeecc---hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHH
Confidence 356888888888873 568999999999999999999999999999999986 333221 1101111
Q ss_pred CCCCCCCCcHHHHHhcCC-CC----C-HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000680 665 QTSWIQSGSIRDNILYGK-PM----D-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1354)
Q Consensus 665 Q~~~~~~~ti~eni~~g~-~~----~-~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~ 738 (1354)
|+ .+...+-+.-.+.-. .. . ++-|.++++-.+..+++...| ..+||||-|-|++||||+..+|
T Consensus 149 ~~-~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~p----------t~slSGGWrMrlaLARAlf~~p 217 (582)
T KOG0062|consen 149 QS-VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQP----------TKSLSGGWRMRLALARALFAKP 217 (582)
T ss_pred hh-hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhcc----------ccccCcchhhHHHHHHHHhcCC
Confidence 11 112223333222211 11 1 233445666666667666543 4679999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEE-EecChHHHHh
Q 000680 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSGNYQELLL 807 (1354)
Q Consensus 739 ~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~g~~~~l~~ 807 (1354)
|+|||||||+.||.....++-+.+.. .+.|+|+|+||..||.. |..|+.+++-|+- +.|+++++.+
T Consensus 218 DlLLLDEPTNhLDv~av~WLe~yL~t---~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk 285 (582)
T KOG0062|consen 218 DLLLLDEPTNHLDVVAVAWLENYLQT---WKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVK 285 (582)
T ss_pred CEEeecCCcccchhHHHHHHHHHHhh---CCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHH
Confidence 99999999999999999998654422 23799999999999998 7888888887664 5677766543
No 396
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.95 E-value=6.9e-28 Score=273.97 Aligned_cols=138 Identities=43% Similarity=0.760 Sum_probs=130.6
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccC
Q 000680 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1354)
Q Consensus 1214 G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~i 1293 (1354)
|+|+|+|++++|+++.+++|+||||+|++||++|||||||||||||+++|+|+++ .+|+|+|||+|+.+++++++|++|
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 6799999999997655679999999999999999999999999999999999998 799999999999999999999999
Q ss_pred ceecccccccccchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1294 SIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1294 siVpQdp~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
++|||+|.+|++|+++|++|++.++++++|++++.+++.+++..+|+++|+ +|.++|.|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G 142 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHG 142 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHH
Confidence 999999999999999999998878999999999999999999999999988 57888865
No 397
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=6.5e-28 Score=257.29 Aligned_cols=187 Identities=23% Similarity=0.329 Sum_probs=146.3
Q ss_pred CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe------------EEEEeC---CC-CCCCC
Q 000680 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------IAYVSQ---TS-WIQSG 672 (1354)
Q Consensus 609 ~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~------------i~yv~Q---~~-~~~~~ 672 (1354)
..++.+||||+|++|++++.+|+||+||||+||.|.|.+.|++|.|.+.|. ++||.- +- |-.+
T Consensus 36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp- 114 (325)
T COG4586 36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP- 114 (325)
T ss_pred hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech-
Confidence 346899999999999999999999999999999999999999999999983 455432 22 3221
Q ss_pred cHHHHHhcC---CCCCHHHHH----HHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 000680 673 SIRDNILYG---KPMDKARYD----KAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1354)
Q Consensus 673 ti~eni~~g---~~~~~~~~~----~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1354)
+.|-+.-- .+...++|. ...+..+++..+ ..+...||-|||.|+.||.||.++|+|++|||
T Consensus 115 -~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~l-----------k~~vr~LSlGqRmraeLaaaLLh~p~VLfLDE 182 (325)
T COG4586 115 -ALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFL-----------KWPVRKLSLGQRMRAELAAALLHPPKVLFLDE 182 (325)
T ss_pred -hhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhh-----------hhhhhhccchHHHHHHHHHHhcCCCcEEEecC
Confidence 22222110 122333333 333333443333 35678999999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 746 PFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 746 p~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
||-+||..+...|.+.+.... .++.||+++||+++-+.. ||||+.|+.|++++.|+.+++.++
T Consensus 183 pTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~ 247 (325)
T COG4586 183 PTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ 247 (325)
T ss_pred CccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHH
Confidence 999999999999877655433 468899999999998876 999999999999999999998764
No 398
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=5.1e-27 Score=260.55 Aligned_cols=180 Identities=23% Similarity=0.325 Sum_probs=123.1
Q ss_pred CCCcceeeeEEeeCCeEEEEECCCCCCHHHHH-HHHhC--------------------CccCCCcEEEEcC-eEEEEeCC
Q 000680 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLL-YAILG--------------------EIPKISGTVNLYG-SIAYVSQT 666 (1354)
Q Consensus 609 ~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl-~~i~g--------------------~~~~~~G~i~~~g-~i~yv~Q~ 666 (1354)
+.++|+|+||+|++||+++|+|+||||||||+ ..+.+ ...|..++ +.| ..++..|+
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 84 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDS--IEGLSPAIAIDQ 84 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCcccccc--ccCCCceEEecC
Confidence 45799999999999999999999999999996 33221 11111111 112 23344444
Q ss_pred CCC-C--CCcHH---HHHhc-CCCCCH---HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhc
Q 000680 667 SWI-Q--SGSIR---DNILY-GKPMDK---ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN 736 (1354)
Q Consensus 667 ~~~-~--~~ti~---eni~~-g~~~~~---~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~ 736 (1354)
+.. . ..++. +...+ ...+.. ....+.++.+++ .+. ....++.+||||||||++||||++.
T Consensus 85 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l---------~~~-~~~~~~~~LSgG~~qrv~laral~~ 154 (226)
T cd03270 85 KTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGL---------GYL-TLSRSAPTLSGGEAQRIRLATQIGS 154 (226)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCC---------Ccc-cccCccCcCCHHHHHHHHHHHHHHh
Confidence 321 1 12322 21111 100111 111122222222 211 1346788999999999999999999
Q ss_pred CC--CEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEE------eCCeEEEec
Q 000680 737 DA--DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVL------EGGQITQSG 800 (1354)
Q Consensus 737 ~~--~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l------~~G~i~~~g 800 (1354)
+| +++||||||++||+.+.+.+.+.+.....+|.|+|++||+++.+..||++++| ++|+|+++|
T Consensus 155 ~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 155 GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 98 59999999999999999999887665555689999999999998889999999 999999876
No 399
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=7.2e-27 Score=292.14 Aligned_cols=207 Identities=27% Similarity=0.427 Sum_probs=173.9
Q ss_pred CcEEEEeeEEEeCCC--CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC---CCcEEEEcC---------
Q 000680 593 RSVKIQEGNFSWDPE--LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK---ISGTVNLYG--------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~--~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~---~~G~i~~~g--------- 658 (1354)
..+.++|.+..-+.. ..+.+|+|||.++++||+.||.||+||||||||++|+|-.+. .+|+|.++|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~ 103 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFR 103 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhh
Confidence 457778887776544 246799999999999999999999999999999999999874 799999999
Q ss_pred -eEEEEeCCCC-CCCCcHHHHHhcCC------CCC----HHHHHHHHHHhccHHHHhcCCCCCcccccCC-CCCCChHHH
Q 000680 659 -SIAYVSQTSW-IQSGSIRDNILYGK------PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQR-GLNLSGGQK 725 (1354)
Q Consensus 659 -~i~yv~Q~~~-~~~~ti~eni~~g~------~~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~-g~~LSgGQk 725 (1354)
..|||.|+.. +.+.||+|++.|.. ..+ +++++++++.-+|+ +. .+|.||.. ...+|||||
T Consensus 104 ~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~-~~------~~t~ig~~~~rgiSGGEr 176 (613)
T KOG0061|consen 104 KISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE-KC------ADTLIGNPGIRGLSGGER 176 (613)
T ss_pred heeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh-hh------ccceecCCCCCccccchh
Confidence 3899999876 56789999998742 122 34666666666665 22 35666532 368999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcch--hhhcCEEEEEeCCeEEEecChH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF--LSEVDRILVLEGGQITQSGNYQ 803 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~--l~~~d~i~~l~~G~i~~~g~~~ 803 (1354)
+||++|.-+..||.|++|||||||||..++.++.+.+.+...+|||||++-|+++. ....|++++|.+|++++.|+.+
T Consensus 177 kRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~ 256 (613)
T KOG0061|consen 177 KRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPR 256 (613)
T ss_pred hHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHH
Confidence 99999999999999999999999999999999998877777789999999999964 4668999999999999999998
Q ss_pred HHH
Q 000680 804 ELL 806 (1354)
Q Consensus 804 ~l~ 806 (1354)
++.
T Consensus 257 ~~~ 259 (613)
T KOG0061|consen 257 ELL 259 (613)
T ss_pred HHH
Confidence 765
No 400
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=1.5e-25 Score=282.54 Aligned_cols=190 Identities=24% Similarity=0.356 Sum_probs=152.5
Q ss_pred CCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC---CCcEEEEcC----------eEEEEeCCCC-CCCCcHH
Q 000680 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK---ISGTVNLYG----------SIAYVSQTSW-IQSGSIR 675 (1354)
Q Consensus 610 ~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~---~~G~i~~~g----------~i~yv~Q~~~-~~~~ti~ 675 (1354)
..+|+|++.-+++|+.+.+.||.||||||||+++.|..+. ..|+|..+| .++|++|+-+ +...|||
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 4689999999999999999999999999999999998764 356888877 4899999865 5678999
Q ss_pred HHHhcCC-------CCC---HHHHH-----HHHHHhccHHHHhcCCCCCcccccCCC-CCCChHHHHHHHHHHHHhcCCC
Q 000680 676 DNILYGK-------PMD---KARYD-----KAIKACALDKDINNFDHGDLTEIGQRG-LNLSGGQKQRIQLARAVYNDAD 739 (1354)
Q Consensus 676 eni~~g~-------~~~---~~~~~-----~~~~~~~l~~~l~~l~~gd~t~ig~~g-~~LSgGQkqRv~lARal~~~~~ 739 (1354)
|-+.|.. .+| ++.|. .+++..+ +...-+|.+|... ...|||||.||++|-+++.++.
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilG-------L~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~ 280 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILG-------LDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPAS 280 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhC-------chhhccceecccccccccCcccceeeeeeeeecCcc
Confidence 9998842 122 22222 2222223 3344567777554 6799999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEcCCcch--hhhcCEEEEEeCCeEEEecChHHHH
Q 000680 740 IYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEF--LSEVDRILVLEGGQITQSGNYQELL 806 (1354)
Q Consensus 740 illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~--l~~~d~i~~l~~G~i~~~g~~~~l~ 806 (1354)
++++||++.|||..+.-++.+.+.... .-+.|.++.-|+... ....|+|++|.+|++++.|+.++.+
T Consensus 281 ~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~ 350 (1391)
T KOG0065|consen 281 ILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVL 350 (1391)
T ss_pred eeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHH
Confidence 999999999999999988776554432 346788888888754 5668999999999999999999886
No 401
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=2e-26 Score=229.05 Aligned_cols=217 Identities=24% Similarity=0.326 Sum_probs=164.0
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------- 658 (1354)
-+++++.+..|.+. .-.+|+||++.|||..+|||.+||||||||++|.|-+.|+.|+|.+..
T Consensus 6 LL~V~~lsk~Yg~~---~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGPG---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCCC---cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 56788899999864 357999999999999999999999999999999999999999998752
Q ss_pred -------eEEEEeCCCCC---CCCcHHHHHhcCC-CCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 000680 659 -------SIAYVSQTSWI---QSGSIRDNILYGK-PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1354)
Q Consensus 659 -------~i~yv~Q~~~~---~~~ti~eni~~g~-~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1354)
..|+|-|+|-- ..-|.-.||---. ......|-+.-. . ..+.++... =|.+.|++.+.+.|||++||
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~-~-a~~WL~~VE-I~~~RiDD~PrtFSGGMqQR 159 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRA-E-AQDWLEEVE-IDLDRIDDLPRTFSGGMQQR 159 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHH-H-HHHHHHhcc-cCcccccCcccccchHHHHH
Confidence 27999999842 1112233331100 011122222211 1 112233221 24567788899999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHH
Q 000680 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 728 v~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1354)
+.|||-+...|.++++||||.+||..+...+.+.+..... -+-.+|+||||+..... +||..||++|+++|+|-.+.+
T Consensus 160 LQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTDrv 239 (258)
T COG4107 160 LQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRV 239 (258)
T ss_pred HHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecccccccc
Confidence 9999999999999999999999999999998875443322 36799999999999886 899999999999999999888
Q ss_pred HhcCc-hHHHHH
Q 000680 806 LLAGT-AFEQLV 816 (1354)
Q Consensus 806 ~~~~~-~~~~~~ 816 (1354)
++++. .|.+++
T Consensus 240 LDDP~hPYTQLL 251 (258)
T COG4107 240 LDDPHHPYTQLL 251 (258)
T ss_pred ccCCCCchHHHH
Confidence 86643 355543
No 402
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=7.5e-26 Score=237.47 Aligned_cols=200 Identities=24% Similarity=0.337 Sum_probs=161.4
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCC--ccCCCcEEEEcC--------------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE--IPKISGTVNLYG-------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~--~~~~~G~i~~~g-------------- 658 (1354)
++++|...+-..+ +.+|+++||+|++||+.+|.||||||||||.++|+|. +++++|+|.++|
T Consensus 4 L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 4 LEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred eEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 5778888776532 4799999999999999999999999999999999996 478999999998
Q ss_pred eEEEEeCCCCC-CCCcHHHHHhcCCC----C---C---HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 000680 659 SIAYVSQTSWI-QSGSIRDNILYGKP----M---D---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1354)
Q Consensus 659 ~i~yv~Q~~~~-~~~ti~eni~~g~~----~---~---~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1354)
.+...+|.|.- +.-|+.+.+.-+.. . . .++.++.++..++++++.. ..+ ...+|||+|.|
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~------R~v---N~GFSGGEkKR 152 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLE------RYV---NEGFSGGEKKR 152 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhh------ccc---CCCcCcchHHH
Confidence 38899999974 44588887764211 1 1 2344445555556553321 112 23699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhc--CEEEEEeCCeEEEecChHHH
Q 000680 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV--DRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 728 v~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~--d~i~~l~~G~i~~~g~~~~l 805 (1354)
..|+.++..+|++.+||||-||||...-+.+.+-+-....+|.+++++||.-..+... |++.+|-+|+|+.+|.+ |+
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el 231 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-EL 231 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HH
Confidence 9999999999999999999999999999987765555566799999999999999875 99999999999999998 65
Q ss_pred H
Q 000680 806 L 806 (1354)
Q Consensus 806 ~ 806 (1354)
.
T Consensus 232 ~ 232 (251)
T COG0396 232 A 232 (251)
T ss_pred H
Confidence 4
No 403
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.93 E-value=6.8e-26 Score=253.70 Aligned_cols=182 Identities=24% Similarity=0.381 Sum_probs=129.8
Q ss_pred CcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHh--------CCc--cCCCcEEEE----cCeEEEEeCCCC--------
Q 000680 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL--------GEI--PKISGTVNL----YGSIAYVSQTSW-------- 668 (1354)
Q Consensus 611 ~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~--------g~~--~~~~G~i~~----~g~i~yv~Q~~~-------- 668 (1354)
..|+|+|++||.|.+++|+|++|||||||++.++ +.. .|..++... -..+-+|.|.|.
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4699999999999999999999999999999663 111 122221111 012444444432
Q ss_pred ---------------------------------------CCCCcHHHHHhcCCCCC-HHHHHHHHHHhccHHHHhcCCCC
Q 000680 669 ---------------------------------------IQSGSIRDNILYGKPMD-KARYDKAIKACALDKDINNFDHG 708 (1354)
Q Consensus 669 ---------------------------------------~~~~ti~eni~~g~~~~-~~~~~~~~~~~~l~~~l~~l~~g 708 (1354)
+.+.|+.||+.|...+. .++..+. ++.+..+
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~---------L~~vgL~ 159 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQT---------LCDVGLG 159 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHH---------HHHcCCc
Confidence 23445555544422111 1111222 2223222
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHHhcC---CCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhc
Q 000680 709 DLTEIGQRGLNLSGGQKQRIQLARAVYND---ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV 785 (1354)
Q Consensus 709 d~t~ig~~g~~LSgGQkqRv~lARal~~~---~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~ 785 (1354)
+. ..+++..+||||||||++||||+.++ |++++|||||++||++..+.+.+.+.....+|.|+|++||+++++..|
T Consensus 160 ~l-~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~a 238 (261)
T cd03271 160 YI-KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCA 238 (261)
T ss_pred hh-hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC
Confidence 21 24678899999999999999999996 799999999999999999998876655555689999999999999889
Q ss_pred CEEEEE------eCCeEEEecCh
Q 000680 786 DRILVL------EGGQITQSGNY 802 (1354)
Q Consensus 786 d~i~~l------~~G~i~~~g~~ 802 (1354)
|++++| ++|+|+++|++
T Consensus 239 D~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 239 DWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CEEEEecCCcCCCCCEEEEeCCC
Confidence 999999 89999999874
No 404
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=5.6e-26 Score=231.12 Aligned_cols=165 Identities=24% Similarity=0.343 Sum_probs=134.3
Q ss_pred CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe------------EEEEeCCCCC-CCCcHH
Q 000680 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------IAYVSQTSWI-QSGSIR 675 (1354)
Q Consensus 609 ~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~------------i~yv~Q~~~~-~~~ti~ 675 (1354)
++..+.++||++.+||.+.|.|||||||||||++|.|+++|++|+|.++|. .-|+.-+|-+ ...|+.
T Consensus 14 e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ 93 (209)
T COG4133 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTAL 93 (209)
T ss_pred cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHH
Confidence 457899999999999999999999999999999999999999999999862 3455555555 567999
Q ss_pred HHHhcCCC----CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcC
Q 000680 676 DNILYGKP----MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVD 751 (1354)
Q Consensus 676 eni~~g~~----~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD 751 (1354)
||+.|-.. -+.+...++++..+|.. ++. .+..+||-|||+||+|||-..+.+++.|||||+++||
T Consensus 94 ENL~F~~~~~~~~~~~~i~~Al~~vgL~g-~~d----------lp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLD 162 (209)
T COG4133 94 ENLHFWQRFHGSGNAATIWEALAQVGLAG-LED----------LPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALD 162 (209)
T ss_pred HHHHHHHHHhCCCchhhHHHHHHHcCccc-ccc----------cchhhcchhHHHHHHHHHHHcCCCCceeecCcccccC
Confidence 99998433 34567778888887753 333 3456899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh
Q 000680 752 AHTAATLFNECVMAALEKKTVILVTHQVEFLSE 784 (1354)
Q Consensus 752 ~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~ 784 (1354)
.+....+-..+.....+|--||++||+.--+..
T Consensus 163 k~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~ 195 (209)
T COG4133 163 KEGVALLTALMAAHAAQGGIVLLTTHQPLPIAS 195 (209)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEecCCccCCCc
Confidence 999886543333445678899999998765543
No 405
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.93 E-value=7.1e-25 Score=291.39 Aligned_cols=94 Identities=27% Similarity=0.477 Sum_probs=84.2
Q ss_pred ccCCCCCCChHHHHHHHHHHHHh---cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEE
Q 000680 713 IGQRGLNLSGGQKQRIQLARAVY---NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRIL 789 (1354)
Q Consensus 713 ig~~g~~LSgGQkqRv~lARal~---~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~ 789 (1354)
.++...+||||||||++||||++ .+|++|||||||++||++..+.+++.+.....+|+|+|+|||+++.+..+|+++
T Consensus 803 l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi 882 (1809)
T PRK00635 803 LGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVL 882 (1809)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEE
Confidence 36788899999999999999998 699999999999999999999998876655567899999999999997799999
Q ss_pred EEe------CCeEEEecChHHHH
Q 000680 790 VLE------GGQITQSGNYQELL 806 (1354)
Q Consensus 790 ~l~------~G~i~~~g~~~~l~ 806 (1354)
+|. +|++++.|+++++.
T Consensus 883 ~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 883 ELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred EEccCCCCCCCEEEEeCCHHHHH
Confidence 996 78999999888764
No 406
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=7.6e-26 Score=263.84 Aligned_cols=171 Identities=21% Similarity=0.362 Sum_probs=136.2
Q ss_pred HHhhHHHHHHHhhcCCCCCCCCCC------C---CCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEE
Q 000680 1179 NYIISVERIKQFMHIPPEPPAIVE------D---KRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVV 1249 (1354)
Q Consensus 1179 ~~~~sveRI~e~~~~~~E~~~~~~------~---~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIV 1249 (1354)
..+++++|+.+|+..+.|.....+ . ...+..||..|.|+|+|++++|+++.+++|+||||+|++||++|||
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~Iv 114 (329)
T PRK14257 35 QKLNKYQRAFAWLKLPKQKKAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFI 114 (329)
T ss_pred hccccccchhhHHhcccccchhhhhcccccccccccccCCCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEE
Confidence 446778888888777665432111 1 0113469999999999999999765567999999999999999999
Q ss_pred CCCCccHHHHHHHHhcccC-----CCCCEEEEcCeeCC--CCChHHHhccCceecccccccccchhhhcC--C-CCCCCH
Q 000680 1250 GRTGSGKTTLISALFRLVE-----PAGGSILIDGVDIC--SMGLKDLRVKLSIIPQEPTLFRGSVRTNLD--P-LGLYSD 1319 (1354)
Q Consensus 1250 GrTGSGKSTL~~lL~R~~e-----~~~G~I~IDGvDI~--~i~l~~LR~~isiVpQdp~LF~GTIR~NLd--p-~~~~sD 1319 (1354)
||||||||||+++|+|+++ |++|+|.|||+||+ ++++.++|+++++|||+|.+|++|+++||+ | ++.++|
T Consensus 115 G~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~ 194 (329)
T PRK14257 115 GPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGIND 194 (329)
T ss_pred CCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCCh
Confidence 9999999999999999997 57999999999997 567789999999999999999999999997 3 333555
Q ss_pred HHH-----HHHHHHcCCchHHhcCCCCcCCCCcccccc
Q 000680 1320 DEI-----WKALEKCQLKTTISSLPNKLDSSGKLFSAA 1352 (1354)
Q Consensus 1320 eeI-----~~AL~~a~l~~~I~~Lp~gldt~G~n~s~~ 1352 (1354)
++. .++++.+++++.+. ..++..|.++|.|
T Consensus 195 ~~~~~~~~~~~l~~~~L~~~l~---~~~~~~~~~LSgG 229 (329)
T PRK14257 195 RKILEKIVEKSLKSAALWDEVK---DDLDKAGNALSGG 229 (329)
T ss_pred HHHHHHHHHHHHHHcCCcchhh---hhhhCCcccCCHH
Confidence 554 56788888865442 4466778888865
No 407
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.93 E-value=7.4e-26 Score=231.65 Aligned_cols=123 Identities=37% Similarity=0.603 Sum_probs=108.5
Q ss_pred ceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEEEeCCCCCCC-CcHHHHH
Q 000680 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWIQS-GSIRDNI 678 (1354)
Q Consensus 613 l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~yv~Q~~~~~~-~ti~eni 678 (1354)
|+|+|+++++||+++|+|+||||||||+++|+|.++|++|+|.++| .++|++|++.+++ .|++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 7899999999999999999999999999999999999999999987 4999999987754 579999
Q ss_pred hcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 000680 679 LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFS 748 (1354)
Q Consensus 679 ~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s 748 (1354)
...++++++++.+++... ..+.++.++..||||||||++||||++++|++++||||||
T Consensus 80 -----~~~~~~~~~l~~l~~~~~-------~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -----ESDERIEEVLKKLGLEDL-------LDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -----HHHHHHHHHHHHTTHGGG-------TGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -----cccccccccccccccccc-------cccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 345567777777776542 2456778889999999999999999999999999999996
No 408
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.92 E-value=4.8e-21 Score=219.31 Aligned_cols=452 Identities=17% Similarity=0.244 Sum_probs=264.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHH---HHHHHHhHHHHHhhHHHHHHHHHHH
Q 000680 325 IITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGE---IVNYIAVDAYRMGEFPFWFHLTWSL 401 (1354)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~---ivNlms~D~~~i~~~~~~~~~~w~~ 401 (1354)
++.++-.++.++.-.|...+++...|+-|+.-.|++=+.-..--+-....|. .=|-++.|+..+.+....+..-..-
T Consensus 164 ~liaiPAtFvNS~Iryle~klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtK 243 (728)
T KOG0064|consen 164 FLIAIPASFVNSAIRYLESKLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTK 243 (728)
T ss_pred HhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhh
Confidence 3334445566666677888999999999999999988753211000011122 2356888998888755544333334
Q ss_pred H-HHHHHHHHHHHHHH---hHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhHHH
Q 000680 402 A-LQLFLAIGVLFGVV---GLGA--LPGLVLFLICGLLNVPFAKILQKCQSEF-------MIAQDERLRSTSEILNNMKI 468 (1354)
Q Consensus 402 p-lqi~~~~~~L~~~l---G~~~--l~gl~v~~i~~~l~~~~~~~~~~~q~~~-------~~~~D~R~~~~~E~L~~Ik~ 468 (1354)
| +.++++.+-|.... |.+. ++|+++. +. ++.++.++-+. ...+..--.+=+.++++-..
T Consensus 244 P~lDl~l~s~~L~~s~~s~g~~~~~~~~lvv~-----lT---a~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEE 315 (728)
T KOG0064|consen 244 PVLDLILISFTLLDSATSVGAAGITLAGLVVY-----LT---AFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEE 315 (728)
T ss_pred HHHHHHHHHHHHHhhhccccccchhhhhhHHH-----HH---HHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHH
Confidence 4 55666555554433 2211 2222221 11 22222222211 11111112355677888889
Q ss_pred HHHhchHHHHHHHHHHHHHHHHH---HHHHHHH-HHHHHHH---HHHHHHH--HHHHHHHHHHHHhC-CCCCC-----HH
Q 000680 469 IKLQSWEEKFKSLIESRREKEFK---WLSEAQL-RKAYGTV---IYWMSPT--IISSVIFLGCALTG-SAPLN-----AS 533 (1354)
Q Consensus 469 IK~~~wE~~f~~~i~~~R~~El~---~l~~~~~-~~~~~~~---~~~~~p~--~v~~~~f~~~~l~~-~~~Lt-----~~ 533 (1354)
|-+|+-.+.-.+++++.-+.=.. .+.|... ......+ -.|.+.- ++++-.++.....+ .-++. -.
T Consensus 316 IAfy~GhkvE~~ql~~sy~~L~~qm~li~k~r~~YiMleqF~mKYvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt 395 (728)
T KOG0064|consen 316 IAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLEQFVMKYTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRT 395 (728)
T ss_pred HHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeeeecccCCCCcccccccchhHH
Confidence 99998876666665554333111 1111110 0001001 0111110 00100011100011 00111 11
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCC-----c----chhh-------h--cccc----
Q 000680 534 TIFT-VLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLD-HELN-----N----DDVR-------R--ISLQ---- 589 (1354)
Q Consensus 534 ~~Ft-~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~-~e~~-----~----~~~~-------~--~~~~---- 589 (1354)
..|+ .=-+.-.....+..+-.....+.|-..--.|+.+.+.- ++.. . +..+ + .+.+
T Consensus 396 ~~f~t~r~LL~saAdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~ 475 (728)
T KOG0064|consen 396 KEFITNRRLLLSAADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDA 475 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccch
Confidence 2232 22233333444555555555566655556676643320 1100 0 0000 0 0000
Q ss_pred -CCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCC
Q 000680 590 -KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQT 666 (1354)
Q Consensus 590 -~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~ 666 (1354)
.....|.++|+-.--|.. ..+...+||+|++|..+.|+||||||||||.+.|.|+.|...|...... ++-|+||.
T Consensus 476 i~~~~gI~lenIpvItP~~--~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQR 553 (728)
T KOG0064|consen 476 IRNFNGIILENIPVITPAG--DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQR 553 (728)
T ss_pred hhcccceEEecCceeccCc--ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCC
Confidence 012357888877766643 3578999999999999999999999999999999999999999888753 69999999
Q ss_pred CCCCCCcHHHHHhcCC--------CCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000680 667 SWIQSGSIRDNILYGK--------PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1354)
Q Consensus 667 ~~~~~~ti~eni~~g~--------~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~ 738 (1354)
|..--+|.||-|.+.. .+.+....+.++...|+.-++. ..|-+. +-+--.-||||+|||+++||..|++|
T Consensus 554 PYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr-~~g~da-~~dWkd~LsgGekQR~~mARm~yHrP 631 (728)
T KOG0064|consen 554 PYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQR-EGGWDA-VRDWKDVLSGGEKQRMGMARMFYHRP 631 (728)
T ss_pred CccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHh-ccChhh-hccHHhhccchHHHHHHHHHHHhcCc
Confidence 9988899999998864 3445666777777777655443 222211 22223469999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEE
Q 000680 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVL 791 (1354)
Q Consensus 739 ~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l 791 (1354)
+.-+|||.|||+-++++..||+.+. .-|-+.|-|||+++..+.-.+.+-.
T Consensus 632 kyalLDEcTsAvsidvE~~i~~~ak---~~gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 632 KYALLDECTSAVSIDVEGKIFQAAK---DAGISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred chhhhhhhhcccccchHHHHHHHHH---hcCceEEEeecCccHHHHHHHHHhc
Confidence 9999999999999999999998653 2478999999999987654444433
No 409
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.92 E-value=8.4e-25 Score=285.27 Aligned_cols=203 Identities=21% Similarity=0.327 Sum_probs=173.9
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------- 658 (1354)
.++.++|.++.|+.... +.+++|+.|++||+.++.|+|||||||++++|.|+.+|++|++.++|
T Consensus 563 ~~~~~~~L~k~y~~~~~--Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG--AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecchhh--hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 57888999999986533 89999999999999999999999999999999999999999999976
Q ss_pred eEEEEeCCCCC-CCCcHHHHHhcCC---CCC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 659 SIAYVSQTSWI-QSGSIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 659 ~i~yv~Q~~~~-~~~ti~eni~~g~---~~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
.+|||||+.-+ ...|.||++.+-. .+. ++..++.+++.+|.+..+ .+..++|||+|+|+++
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~-----------~~~~~ySgG~kRkLs~ 709 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYAN-----------KQVRTYSGGNKRRLSF 709 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhc-----------cchhhCCCcchhhHHH
Confidence 39999998654 5779999997621 122 233556666666665543 3467899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
|-|+..+|++++||||++|+||+.++++++.+....+.|+.+|++||.+++.+. |||+.+|.+|++...|+++++..+
T Consensus 710 aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsr 788 (885)
T KOG0059|consen 710 AIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSR 788 (885)
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhh
Confidence 999999999999999999999999999998766655667799999999999987 999999999999999999998743
No 410
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=2.7e-25 Score=220.55 Aligned_cols=188 Identities=25% Similarity=0.386 Sum_probs=143.0
Q ss_pred EEEEeeEEEeCCC----CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEc--C----------
Q 000680 595 VKIQEGNFSWDPE----LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY--G---------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~----~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~--g---------- 658 (1354)
+.++|+++++.-. -.-|+++|+||+++.||++++-||+|+||||||+++-|.|.|++|+|.+. |
T Consensus 5 l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~p 84 (235)
T COG4778 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84 (235)
T ss_pred eeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccCh
Confidence 4556665554321 12478999999999999999999999999999999999999999999874 2
Q ss_pred ---------eEEEEeCCC-CCCCCcHHHHHh-----cCCCCC--HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCC
Q 000680 659 ---------SIAYVSQTS-WIQSGSIRDNIL-----YGKPMD--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1354)
Q Consensus 659 ---------~i~yv~Q~~-~~~~~ti~eni~-----~g~~~~--~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LS 721 (1354)
.||||+|.- .++.-+-.|-+. -|-+-+ ..+....+....+.+.+-.+ .+.+.|
T Consensus 85 r~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~L----------aPaTFS 154 (235)
T COG4778 85 REVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSL----------APATFS 154 (235)
T ss_pred HHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcC----------CCcccC
Confidence 489999973 344444444332 233322 12333344444444444333 357899
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEe
Q 000680 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLE 792 (1354)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~ 792 (1354)
||+||||.|||.++-|-+|+||||||++||+.+.+-+.+.+...+.+|..+|=+-||-+.-+. |||++.|.
T Consensus 155 GGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 155 GGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred CchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 999999999999999999999999999999999998887666667789999999999776655 79988774
No 411
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.91 E-value=1.9e-24 Score=234.31 Aligned_cols=153 Identities=20% Similarity=0.194 Sum_probs=120.1
Q ss_pred eeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCc---------EEEEc----------CeEEEEeCCCCCCCCcH
Q 000680 614 RGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISG---------TVNLY----------GSIAYVSQTSWIQSGSI 674 (1354)
Q Consensus 614 ~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G---------~i~~~----------g~i~yv~Q~~~~~~~ti 674 (1354)
+++++++++| +++|+||||||||||+++|.|.+++..| ++.+. .+|+|++|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 9999999999999999999998866532 34332 2689999999876
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCc
Q 000680 675 RDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY----NDADIYLFDDPFSAV 750 (1354)
Q Consensus 675 ~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~----~~~~illLDep~s~l 750 (1354)
|+.. ..++.+++++. + + ....+..+||||||||++||||+. ++|++++||||+++|
T Consensus 89 -----~~~~-~~~~~~~~l~~----------~--~--~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~L 148 (197)
T cd03278 89 -----YSII-SQGDVSEIIEA----------P--G--KKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAAL 148 (197)
T ss_pred -----eeEE-ehhhHHHHHhC----------C--C--ccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccC
Confidence 3221 23344444443 1 1 112567789999999999999986 577999999999999
Q ss_pred CHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEe
Q 000680 751 DAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLE 792 (1354)
Q Consensus 751 D~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~ 792 (1354)
|+...+.+.+.+.+ ..++.|+|++||+++.+..+|+++.|.
T Consensus 149 D~~~~~~l~~~l~~-~~~~~tiIiitH~~~~~~~~d~v~~~~ 189 (197)
T cd03278 149 DDANVERFARLLKE-FSKETQFIVITHRKGTMEAADRLYGVT 189 (197)
T ss_pred CHHHHHHHHHHHHH-hccCCEEEEEECCHHHHhhcceEEEEE
Confidence 99999998875544 345789999999999988899999885
No 412
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.91 E-value=3.2e-21 Score=232.31 Aligned_cols=386 Identities=17% Similarity=0.166 Sum_probs=262.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcc------hHHHHHhhcHHHHHhhhH
Q 000680 937 LIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVG------RILTRLSSDLSILDFDIP 1010 (1354)
Q Consensus 937 ~~~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G------~IlnRfs~Di~~id~~l~ 1010 (1354)
.+.+|..+..+..++...+.++......+....|-+.++++-+.-- +||-....| ..=.|+..|+...-....
T Consensus 88 ~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~-~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~ 166 (604)
T COG4178 88 QLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPR-RYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTL 166 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHhcccccCCCChHHhHHHHHHHHHhhHH
Confidence 4567777777777777788888888888888888888888888776 555444443 234788899887666544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------hHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 000680 1011 FSIVFVAASGTELLAIIGIMTFV---------------TWQVLVVA----IFAMVAVRFVQRYYIATARELIRINGTTKA 1071 (1354)
Q Consensus 1011 ~~l~~~~~~~~~~i~~i~v~~~~---------------~~~l~l~~----l~~~~~~~~i~~~y~~~sr~l~rl~~~~~s 1071 (1354)
.....++.++++++...+++.-. ...+..++ +...++..++.+...+-.-+..+.|+.-|.
T Consensus 167 ~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~ 246 (604)
T COG4178 167 DLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRY 246 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHH
Confidence 44455556666555555544311 11111111 122222334555555555666666666665
Q ss_pred hHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCccCh
Q 000680 1072 PVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTA-ALFLVLIPRGYVAP 1150 (1354)
Q Consensus 1072 pl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~-~~~~vl~~~g~ls~ 1150 (1354)
.+.. .-+....|-.|+-|+...++..+..+.-.+.+......+.++...-...+-+.+++- .+.+-....|+++.
T Consensus 247 ~Lvr----v~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~ 322 (604)
T COG4178 247 SLVR----VRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITF 322 (604)
T ss_pred HHHH----HHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChH
Confidence 4432 344566677888777766666665555444443333333333322222222222111 11122234789999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhc------CCCCCCCCCCCCCCCCCCCCcceEEEEEEEEE
Q 000680 1151 GLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMH------IPPEPPAIVEDKRPPSSWPFKGRIELRQLKIR 1224 (1354)
Q Consensus 1151 g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~------~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~ 1224 (1354)
|.+..+.+-..++...+.|++..+..+..-.++..|+.++.+ .+++.+.... .+....-..+..|+|+|++..
T Consensus 323 G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~nl~l~ 401 (604)
T COG4178 323 GGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTG-RRIDFDDNADHGITLENLSLR 401 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccc-ccccccccccceeEEeeeeEE
Confidence 999999888889999999999999999999999999999863 2222211100 000000001468999999999
Q ss_pred eCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccccccc
Q 000680 1225 YRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFR 1304 (1354)
Q Consensus 1225 Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~ 1304 (1354)
-+++. ..|+++||+|+|||.+-|.|+||||||||+++|.|+++-.+|+|.+-. -+++-++||.|++=.
T Consensus 402 ~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~ 469 (604)
T COG4178 402 TPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQ 469 (604)
T ss_pred CCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCC
Confidence 87655 589999999999999999999999999999999999999999987751 156889999999999
Q ss_pred cchhhhcC-CCCC--CCHHHHHHHHHHcCCchHHhcCCC
Q 000680 1305 GSVRTNLD-PLGL--YSDDEIWKALEKCQLKTTISSLPN 1340 (1354)
Q Consensus 1305 GTIR~NLd-p~~~--~sDeeI~~AL~~a~l~~~I~~Lp~ 1340 (1354)
||+|+=|. |... ++|+|+.++|.+|+|.+++.++.+
T Consensus 470 GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~ 508 (604)
T COG4178 470 GTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE 508 (604)
T ss_pred ccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc
Confidence 99999995 4433 899999999999999999998764
No 413
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.90 E-value=2.9e-24 Score=248.11 Aligned_cols=200 Identities=23% Similarity=0.340 Sum_probs=168.8
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEc--CeEEEEeCCCC-
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY--GSIAYVSQTSW- 668 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~--g~i~yv~Q~~~- 668 (1354)
...|.++|++|.|+.+. .+++++||-|..++.+++|||||+||||||+++.|++.|+.|.|.-. -.+++..|+--
T Consensus 387 ~pvi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e 464 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAE 464 (614)
T ss_pred CCeEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHh
Confidence 45789999999998654 68999999999999999999999999999999999999999998754 35777788642
Q ss_pred --CCCCcHHHHHh--cCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEe
Q 000680 669 --IQSGSIRDNIL--YGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744 (1354)
Q Consensus 669 --~~~~ti~eni~--~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLD 744 (1354)
....+.-|+++ |......+.++..+..|+|..|.+.. ...+||+|||.||..||..+..|.+++||
T Consensus 465 ~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~----------p~~~LS~Gqr~rVlFa~l~~kqP~lLlLD 534 (614)
T KOG0927|consen 465 QLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVV----------PMSQLSDGQRRRVLFARLAVKQPHLLLLD 534 (614)
T ss_pred hcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCcccccc----------chhhcccccchhHHHHHHHhcCCcEEEec
Confidence 34668888886 44345678899999999999877643 34689999999999999999999999999
Q ss_pred CCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEE-EecChHHHH
Q 000680 745 DPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSGNYQELL 806 (1354)
Q Consensus 745 ep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~g~~~~l~ 806 (1354)
|||++||..+...+-+ .++.. .-++|+||||..++.+ +++|.+++||.+. ..|.+....
T Consensus 535 EPtnhLDi~tid~lae-aiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk 595 (614)
T KOG0927|consen 535 EPTNHLDIETIDALAE-AINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYK 595 (614)
T ss_pred CCCcCCCchhHHHHHH-HHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHH
Confidence 9999999999887654 33322 3489999999999998 7999999999886 678877764
No 414
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.89 E-value=9.1e-23 Score=224.77 Aligned_cols=180 Identities=17% Similarity=0.208 Sum_probs=126.6
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEee-CCeEEEEECCCCCCHHHHHHHHhCCc-cCCCcEEEE------------cCe
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIK-WAQKIAVCGSVGAGKSSLLYAILGEI-PKISGTVNL------------YGS 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~-~G~~~~ivG~~GsGKStLl~~i~g~~-~~~~G~i~~------------~g~ 659 (1354)
.|+++|.. +|..+ ++++|+.. +|++++|+||||||||||+++|.+.+ .+..+.... ...
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAE 77 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEE
Confidence 46777766 55422 56777654 58999999999999999999999643 333333322 125
Q ss_pred EEEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHH--HHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhc-
Q 000680 660 IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAI--KACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN- 736 (1354)
Q Consensus 660 i~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~--~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~- 736 (1354)
|++++|++...-...| +. ..+.+.+.+.+ +...+ .+.++.++.+||||||||++||||++.
T Consensus 78 v~~~f~~~~~~~~~~r----~~-gl~~~~~~~~~~l~~g~l-----------~~~l~~~~~~lS~G~~~r~~la~al~~~ 141 (213)
T cd03279 78 VSFTFQLGGKKYRVER----SR-GLDYDQFTRIVLLPQGEF-----------DRFLARPVSTLSGGETFLASLSLALALS 141 (213)
T ss_pred EEEEEEECCeEEEEEE----ec-CCCHHHHHHhhhhhhcch-----------HHHhcCCccccCHHHHHHHHHHHHHHhH
Confidence 8888888743221111 11 23333333321 11112 223356788999999999999999984
Q ss_pred ---------CCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeE
Q 000680 737 ---------DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1354)
Q Consensus 737 ---------~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1354)
+|++++|||||++||+...+.+.+.+.....+++|+|++||+++++.. +|++++|++|.+
T Consensus 142 p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 142 EVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 679999999999999999999876554444458899999999999877 699999999854
No 415
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.89 E-value=9.9e-23 Score=222.37 Aligned_cols=154 Identities=21% Similarity=0.299 Sum_probs=122.3
Q ss_pred eeEEeeCCeEEEEECCCCCCHHHHHHHH----hCCccCCCcEEEE----------cCeEEEEeCCC-C----C-CCCcHH
Q 000680 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAI----LGEIPKISGTVNL----------YGSIAYVSQTS-W----I-QSGSIR 675 (1354)
Q Consensus 616 i~l~i~~G~~~~ivG~~GsGKStLl~~i----~g~~~~~~G~i~~----------~g~i~yv~Q~~-~----~-~~~ti~ 675 (1354)
.++++.+| +++|+||||||||||+++| .|..+|.+|.+.. ...|++++|++ + + .+.|+.
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~ 94 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAIL 94 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHh
Confidence 45667777 9999999999999999999 4999998875531 12699999988 2 1 234899
Q ss_pred HHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHH------HHHHHHHhcCCCEEEEeCCCCC
Q 000680 676 DNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR------IQLARAVYNDADIYLFDDPFSA 749 (1354)
Q Consensus 676 eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqR------v~lARal~~~~~illLDep~s~ 749 (1354)
||+.++. +++.++.+ .+.+.+||+||||| +++|||+..+|++++||||+++
T Consensus 95 ~~~~~~~---~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~ 151 (204)
T cd03240 95 ENVIFCH---QGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTN 151 (204)
T ss_pred hceeeec---hHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccc
Confidence 9998752 22222221 35677999999996 7899999999999999999999
Q ss_pred cCHHHHH-HHHHHHHHHhcC-CcEEEEEcCCcchhhhcCEEEEEeC
Q 000680 750 VDAHTAA-TLFNECVMAALE-KKTVILVTHQVEFLSEVDRILVLEG 793 (1354)
Q Consensus 750 lD~~~~~-~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~ 793 (1354)
||+...+ .+.+.+.....+ ++|+|++||+++.+..||+++.|++
T Consensus 152 LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 152 LDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred cCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 9999999 887766544434 7899999999998888999999964
No 416
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.88 E-value=1.7e-22 Score=224.33 Aligned_cols=138 Identities=57% Similarity=1.018 Sum_probs=126.4
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccC
Q 000680 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1354)
Q Consensus 1214 G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~i 1293 (1354)
|.|+++|++++|+.+..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 57999999999975444699999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecccccccccchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCccccc
Q 000680 1294 SIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSA 1351 (1354)
Q Consensus 1294 siVpQdp~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~ 1351 (1354)
+++||+|.+|++|+++|++++...+++++.++++..++.+++..+|.|+++ ...++|.
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~ 142 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSV 142 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCH
Confidence 999999999999999999977667888999999999999999999999887 3455554
No 417
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=4.5e-22 Score=221.79 Aligned_cols=200 Identities=24% Similarity=0.363 Sum_probs=137.0
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCCCCCCCc
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGS 673 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~i~yv~Q~~~~~~~t 673 (1354)
.|.++|.+.+-. .+..+.|-|+.|-.|-..++|||||-||||||+.|..---..-- +=.+-||-|+-.-...|
T Consensus 264 DIKiEnF~ISA~---Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPp----nIDvLlCEQEvvad~t~ 336 (807)
T KOG0066|consen 264 DIKIENFDISAQ---GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPP----NIDVLLCEQEVVADSTS 336 (807)
T ss_pred cceeeeeeeecc---cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCC----CCceEeeeeeeeecCcH
Confidence 477777666543 34578999999999999999999999999999999753111000 11367888886655555
Q ss_pred HHHHHhcC---------------------CCCCHHHHHHHHH---Hhc-------cHHHHhcCCCCCcccccCCC-CCCC
Q 000680 674 IRDNILYG---------------------KPMDKARYDKAIK---ACA-------LDKDINNFDHGDLTEIGQRG-LNLS 721 (1354)
Q Consensus 674 i~eni~~g---------------------~~~~~~~~~~~~~---~~~-------l~~~l~~l~~gd~t~ig~~g-~~LS 721 (1354)
.-+.|+-. .....++.+++.+ +.+ ..+-+.. .|-..+..+++ ..+|
T Consensus 337 Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAG--LGFskEMQ~rPt~kFS 414 (807)
T KOG0066|consen 337 AIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAG--LGFSKEMQERPTTKFS 414 (807)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhh--cCCChhHhcCCccccC
Confidence 54444321 1111233333321 111 1112221 22233333444 6799
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEE-Ee
Q 000680 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QS 799 (1354)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~ 799 (1354)
||-|-||+||||||..|-++.|||||++||-....++ ++.+.++ .||.++|+||-.|+.. |..|+.+++-++- +.
T Consensus 415 GGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWL-dNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYr 491 (807)
T KOG0066|consen 415 GGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWL-DNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYR 491 (807)
T ss_pred CceeeehhHHHHHhcCceeeeecCCccccccceeeeh-hhHHhhh--hheeEEEecccchHHHHHHHHhhhhhhhhhhhc
Confidence 9999999999999999999999999999999988876 3444444 3799999999999987 7889999887774 56
Q ss_pred cChHHH
Q 000680 800 GNYQEL 805 (1354)
Q Consensus 800 g~~~~l 805 (1354)
|+|.-+
T Consensus 492 GNY~~F 497 (807)
T KOG0066|consen 492 GNYTLF 497 (807)
T ss_pred chHHHH
Confidence 666544
No 418
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.88 E-value=1.8e-22 Score=227.48 Aligned_cols=177 Identities=22% Similarity=0.259 Sum_probs=114.3
Q ss_pred CCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCC----------------ccCCCcEEEEcCeEEEEeCCCCCC---
Q 000680 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE----------------IPKISGTVNLYGSIAYVSQTSWIQ--- 670 (1354)
Q Consensus 610 ~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~----------------~~~~~G~i~~~g~i~yv~Q~~~~~--- 670 (1354)
..++++++ |++++|+||||||||||+++|.+. ..+.+|.....+.|.+++|++.-+
T Consensus 15 ~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~ 89 (243)
T cd03272 15 QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPI 89 (243)
T ss_pred CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCC
Confidence 34666665 889999999999999999999843 333334111122344444443110
Q ss_pred ---CCcHH-------HHHhcC-CCCCHHHHHHHHHHhccHHHHh--cCCCCCcc-------cccCCCCCCChHHHHHHHH
Q 000680 671 ---SGSIR-------DNILYG-KPMDKARYDKAIKACALDKDIN--NFDHGDLT-------EIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 671 ---~~ti~-------eni~~g-~~~~~~~~~~~~~~~~l~~~l~--~l~~gd~t-------~ig~~g~~LSgGQkqRv~l 730 (1354)
+.+++ +++.+. .....+.+...++.+++..+-. ..+.|..+ ..++++.+||||||||++|
T Consensus 90 ~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~l 169 (243)
T cd03272 90 DKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVAL 169 (243)
T ss_pred CCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHH
Confidence 11111 222111 1223344555555544432100 01122111 2357889999999999999
Q ss_pred HHHHh----cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEe
Q 000680 731 ARAVY----NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLE 792 (1354)
Q Consensus 731 ARal~----~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~ 792 (1354)
|||++ .+|++++|||||++||+...+.+.+.+.. ..+++|+|++||+.+....||++++|+
T Consensus 170 a~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~-~~~~~~ii~~~h~~~~~~~~d~i~~l~ 234 (243)
T cd03272 170 ALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKE-LSDGAQFITTTFRPELLEVADKFYGVK 234 (243)
T ss_pred HHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHH-HhCCCEEEEEecCHHHHhhCCEEEEEE
Confidence 99997 36899999999999999999998876544 344788898999887777799999995
No 419
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.88 E-value=5e-22 Score=235.07 Aligned_cols=184 Identities=27% Similarity=0.414 Sum_probs=149.5
Q ss_pred cceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe--------------EEEEeCCC----CCCCCc
Q 000680 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------------IAYVSQTS----WIQSGS 673 (1354)
Q Consensus 612 ~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~--------------i~yv~Q~~----~~~~~t 673 (1354)
.++|+||++.+||+++|.|-.|||+|-|+++|.|.-++.+|+|.++|+ |+|||.+- .+...+
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~s 353 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS 353 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCc
Confidence 478999999999999999999999999999999998899999999984 99999873 467889
Q ss_pred HHHHHhcCC--------CCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 000680 674 IRDNILYGK--------PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1354)
Q Consensus 674 i~eni~~g~--------~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1354)
|++||.+.. ..+..+.++..+. ...+++.=..+ ......+||||.+|+|.|||.++.+|+++||||
T Consensus 354 I~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~--~~~~l~Ik~~s----~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDE 427 (500)
T COG1129 354 IAENITLASLRRFSRRGLIDRRKERALAER--YIRRLRIKTPS----PEQPIGTLSGGNQQKVVLARWLATDPKVLILDE 427 (500)
T ss_pred HHHheehHhhhhhccccccChHHHHHHHHH--HHHhcCcccCC----ccchhhcCCchhhhhHHHHHHHhcCCCEEEECC
Confidence 999998751 1222222222221 12222211111 124567899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhh-hcCEEEEEeCCeEEEecC
Q 000680 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGN 801 (1354)
Q Consensus 746 p~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~ 801 (1354)
||-|+|.-....||+.+.+...+|++||++|.++.++- .||||+||++|+|+..=+
T Consensus 428 PTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~ 484 (500)
T COG1129 428 PTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELD 484 (500)
T ss_pred CCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEec
Confidence 99999999999999887777789999999999998865 599999999999986433
No 420
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.87 E-value=4e-22 Score=226.32 Aligned_cols=141 Identities=47% Similarity=0.780 Sum_probs=126.7
Q ss_pred CcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhc
Q 000680 1212 FKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291 (1354)
Q Consensus 1212 ~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~ 1291 (1354)
..|.|+++|++++|......+|+|+||+|+|||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+.+...+|+
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 46789999999999654346999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceecccccccccchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1292 KLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1292 ~isiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
+++++||+|.+|.+|+++|+++.....+++++++++.+++.+.+..+|.|+++ .+.++|.|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G 160 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVG 160 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHH
Confidence 99999999999999999999876445677889999999999999999988886 35566643
No 421
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.87 E-value=9.4e-22 Score=252.98 Aligned_cols=108 Identities=24% Similarity=0.473 Sum_probs=92.6
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCC---CEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCC
Q 000680 702 INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA---DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ 778 (1354)
Q Consensus 702 l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~---~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~ 778 (1354)
++.+..++.+ .+++..+||||||||+.|||++.++| ++|||||||++||++..+.+.+.+.....+|+|+|+|||+
T Consensus 814 L~~vgL~~l~-l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~ 892 (943)
T PRK00349 814 LVDVGLGYIK-LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHN 892 (943)
T ss_pred HHHCCCCccc-ccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 3334444322 46788999999999999999999999 9999999999999999999887655554578999999999
Q ss_pred cchhhhcCEEEEE------eCCeEEEecChHHHHhcCc
Q 000680 779 VEFLSEVDRILVL------EGGQITQSGNYQELLLAGT 810 (1354)
Q Consensus 779 ~~~l~~~d~i~~l------~~G~i~~~g~~~~l~~~~~ 810 (1354)
++.+..||+|+.| ++|+|++.|+++++.+...
T Consensus 893 ~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~ 930 (943)
T PRK00349 893 LDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVAKVEA 930 (943)
T ss_pred HHHHHhCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcc
Confidence 9999889999999 7999999999999986553
No 422
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.87 E-value=6e-22 Score=224.01 Aligned_cols=169 Identities=20% Similarity=0.231 Sum_probs=125.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHhCCccCC-CcEEEEcC----------------eEEEEeCCCC----------CCCCcHH
Q 000680 623 AQKIAVCGSVGAGKSSLLYAILGEIPKI-SGTVNLYG----------------SIAYVSQTSW----------IQSGSIR 675 (1354)
Q Consensus 623 G~~~~ivG~~GsGKStLl~~i~g~~~~~-~G~i~~~g----------------~i~yv~Q~~~----------~~~~ti~ 675 (1354)
..+++|+||||||||||+++|.+.+.+. .|++...+ +|++++|++. .+..||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 4599999999999999999999998775 34544321 6899999862 1246888
Q ss_pred HHHhcCCC---------CCHHHHHHHHHHhccHHH-Hh-cCCCCCc-------ccccCCCCCCChHHHHHHHHHHHHh--
Q 000680 676 DNILYGKP---------MDKARYDKAIKACALDKD-IN-NFDHGDL-------TEIGQRGLNLSGGQKQRIQLARAVY-- 735 (1354)
Q Consensus 676 eni~~g~~---------~~~~~~~~~~~~~~l~~~-l~-~l~~gd~-------t~ig~~g~~LSgGQkqRv~lARal~-- 735 (1354)
+|+..+.. ...+++.+.++.+++..| .. .++.|+- .....++.+||||||||++||||++
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 88866532 123456666666666421 00 0111111 1234678899999999999999998
Q ss_pred --cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEe
Q 000680 736 --NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLE 792 (1354)
Q Consensus 736 --~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~ 792 (1354)
.+|+++++||||++||+...+++++.+.+. .+|.|+|++||+.+.+..||+++-+.
T Consensus 185 ~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~-~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLSHTQNIGRMIKTH-FKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred hccCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 588999999999999999999988765443 56889999999988888899998774
No 423
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.86 E-value=5.5e-22 Score=223.59 Aligned_cols=173 Identities=21% Similarity=0.200 Sum_probs=125.9
Q ss_pred EeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------------eEEEEeCCCC--CCCCcHHH
Q 000680 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------------SIAYVSQTSW--IQSGSIRD 676 (1354)
Q Consensus 619 ~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------------~i~yv~Q~~~--~~~~ti~e 676 (1354)
...++ +++|+||||||||||+.+|.+.+.+..|++...+ .+.|..|++- +...++++
T Consensus 19 ~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~ 97 (247)
T cd03275 19 GPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITG 97 (247)
T ss_pred cCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEEC
Confidence 33344 9999999999999999999998877666554311 1334344321 12223332
Q ss_pred HHh----cCCCCCHHHHHHHHHHhccHHHHhc--CCCCCcccccC---------CCCCCChHHHHHHHHHHHHhc----C
Q 000680 677 NIL----YGKPMDKARYDKAIKACALDKDINN--FDHGDLTEIGQ---------RGLNLSGGQKQRIQLARAVYN----D 737 (1354)
Q Consensus 677 ni~----~g~~~~~~~~~~~~~~~~l~~~l~~--l~~gd~t~ig~---------~g~~LSgGQkqRv~lARal~~----~ 737 (1354)
.-. -+.+.+++.|++.++.|++..+... .+.|+.+.+.+ +..+||||||||++||||++. +
T Consensus 98 ~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~ 177 (247)
T cd03275 98 GSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQP 177 (247)
T ss_pred CceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCC
Confidence 211 1344667888999999998755332 34555555533 237899999999999999976 4
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEe
Q 000680 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLE 792 (1354)
Q Consensus 738 ~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~ 792 (1354)
|++++|||||++||+....++.+.+.....+|.|+|+|||+.+.+..||++++|.
T Consensus 178 p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~ 232 (247)
T cd03275 178 APFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVY 232 (247)
T ss_pred CCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEE
Confidence 9999999999999999999988765554445889999999998888899999885
No 424
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.86 E-value=1.8e-22 Score=201.37 Aligned_cols=184 Identities=26% Similarity=0.414 Sum_probs=148.2
Q ss_pred cceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe-------------EEEEeCCC-CCCCCcHHHH
Q 000680 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-------------IAYVSQTS-WIQSGSIRDN 677 (1354)
Q Consensus 612 ~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~-------------i~yv~Q~~-~~~~~ti~en 677 (1354)
-|-.+|.++..||+.-+||||||||||||..++|+. |-+|+|.+.|. -+|.+|+. -.+.+-|...
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~Y 92 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHY 92 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhh
Confidence 366789999999999999999999999999999976 56899999983 58998874 3567788888
Q ss_pred HhcCCCCCHHH---HHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhc-------CCCEEEEeCCC
Q 000680 678 ILYGKPMDKAR---YDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN-------DADIYLFDDPF 747 (1354)
Q Consensus 678 i~~g~~~~~~~---~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~-------~~~illLDep~ 747 (1354)
+....|. +++ .+.+.+..++.+ .+|+....||||+-|||-||-.+.+ +.+++++|||.
T Consensus 93 L~L~qP~-~~~a~~i~~i~~~L~l~D-----------KL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~ 160 (248)
T COG4138 93 LTLHQPD-KTRTELLNDVAGALALDD-----------KLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPM 160 (248)
T ss_pred hhhcCch-HHHHHHHHHHHhhhcccc-----------hhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCC
Confidence 8876663 332 223333223322 2456778999999999999988876 44699999999
Q ss_pred CCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcch-hhhcCEEEEEeCCeEEEecChHHHHhc
Q 000680 748 SAVDAHTAATLFNECVMAALEKKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 748 s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~-l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
++||......+...+.....+|.|||+..||++. +++||++..++.|++...|..+|++..
T Consensus 161 ~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 161 NSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred cchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 9999998887755444556789999999999975 888999999999999999999998754
No 425
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.86 E-value=2.2e-21 Score=213.18 Aligned_cols=118 Identities=53% Similarity=0.988 Sum_probs=108.2
Q ss_pred CCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHH
Q 000680 1210 WPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL 1289 (1354)
Q Consensus 1210 wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~L 1289 (1354)
||..+.++++|++++|.....++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 89999999999999996533469999999999999999999999999999999999999999999999999999999899
Q ss_pred hccCceecccccccccchhhhcCCCCCCCHHHHHHHHH
Q 000680 1290 RVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALE 1327 (1354)
Q Consensus 1290 R~~isiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~AL~ 1327 (1354)
|++++++||+|.+|++|+++|+..+..++++++.++++
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~ 118 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR 118 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh
Confidence 99999999999999999999997665566777777776
No 426
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.85 E-value=7e-22 Score=201.10 Aligned_cols=134 Identities=24% Similarity=0.427 Sum_probs=116.5
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHH---Hhcc
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---LRVK 1292 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~---LR~~ 1292 (1354)
|+|+||+.+|..+ +++|+||||+|++||.+=++|+|||||||++++|+|...|++|+|.++|.|++++.-++ ||++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 8999999999876 67999999999999999999999999999999999999999999999999999988554 7999
Q ss_pred Cceeccccccccc-chhhhcC-CCC--CCC----HHHHHHHHHHcCCchHHhcCCCCcCCCCccccc
Q 000680 1293 LSIIPQEPTLFRG-SVRTNLD-PLG--LYS----DDEIWKALEKCQLKTTISSLPNKLDSSGKLFSA 1351 (1354)
Q Consensus 1293 isiVpQdp~LF~G-TIR~NLd-p~~--~~s----DeeI~~AL~~a~l~~~I~~Lp~gldt~G~n~s~ 1351 (1354)
||+|.||--|... |+.||+. |.. ..+ .+.+.++|+.++|.+-...+|..|. +|++=++
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LS-GGEQQRv 146 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLS-GGEQQRV 146 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccC-chHHHHH
Confidence 9999999998865 9999985 332 123 3457789999999999999998764 4554443
No 427
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.85 E-value=9e-22 Score=248.77 Aligned_cols=189 Identities=24% Similarity=0.357 Sum_probs=159.6
Q ss_pred CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEEcC----------eEEEEeCCC-CCCCCcHH
Q 000680 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--KISGTVNLYG----------SIAYVSQTS-WIQSGSIR 675 (1354)
Q Consensus 609 ~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~--~~~G~i~~~g----------~i~yv~Q~~-~~~~~ti~ 675 (1354)
.+.+|+||+=-++||.++|++|++||||||||+.|+|-.. ..+|+|.++| .+|||.|+. .+...|||
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVr 882 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVR 882 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchH
Confidence 4578999999999999999999999999999999999643 3578888988 489999986 46788999
Q ss_pred HHHhcCC------CCC-H---HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCC-CEEEEe
Q 000680 676 DNILYGK------PMD-K---ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA-DIYLFD 744 (1354)
Q Consensus 676 eni~~g~------~~~-~---~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~-~illLD 744 (1354)
|-+.|.. ..+ + +..++|++..+|++-- +..||..|..||.+||+|+.||--|..|| .|++||
T Consensus 883 ESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLD 955 (1391)
T KOG0065|consen 883 ESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLD 955 (1391)
T ss_pred HHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCceeEEec
Confidence 9998852 122 2 3346677766665432 34689999999999999999999999999 899999
Q ss_pred CCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcch--hhhcCEEEEEe-CCeEEEecChHH
Q 000680 745 DPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF--LSEVDRILVLE-GGQITQSGNYQE 804 (1354)
Q Consensus 745 ep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~--l~~~d~i~~l~-~G~i~~~g~~~~ 804 (1354)
|||||||++++..+.+.+.+....|+||+..-|+++- .+..|+++.|+ +|+.++.|+..+
T Consensus 956 EPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 956 EPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred CCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 9999999999999988777777899999999999974 56789999995 789999998765
No 428
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.85 E-value=8.7e-21 Score=243.68 Aligned_cols=93 Identities=29% Similarity=0.532 Sum_probs=84.7
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhc---CCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEE
Q 000680 713 IGQRGLNLSGGQKQRIQLARAVYN---DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRIL 789 (1354)
Q Consensus 713 ig~~g~~LSgGQkqRv~lARal~~---~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~ 789 (1354)
++++..+||||||||++|||++.. +|++|+|||||++||+...+.+.+.+.....+|+|+|++||+++.+..||+|+
T Consensus 822 l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii 901 (924)
T TIGR00630 822 LGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYII 901 (924)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE
Confidence 477889999999999999999997 59999999999999999999998766555557899999999999998899999
Q ss_pred EE------eCCeEEEecChHHH
Q 000680 790 VL------EGGQITQSGNYQEL 805 (1354)
Q Consensus 790 ~l------~~G~i~~~g~~~~l 805 (1354)
+| ++|+|++.|+++++
T Consensus 902 ~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 902 DLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EecCCccCCCCEEEEeCCHHHh
Confidence 99 79999999998875
No 429
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=6.1e-21 Score=212.79 Aligned_cols=199 Identities=21% Similarity=0.381 Sum_probs=154.1
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCC--
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSW-- 668 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~~~-- 668 (1354)
..+-+.|++|.|+.. .|.+++++|-|.-...+|||||||.||||||++|+|.+.|++|+.+-+- +||+..|+..
T Consensus 585 PvLGlH~VtFgy~gq--kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~ 662 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQ--KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEA 662 (807)
T ss_pred CeeecccccccCCCC--CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHh
Confidence 456788999999854 5899999999999999999999999999999999999999999987654 6999999753
Q ss_pred C-CCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCC
Q 000680 669 I-QSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPF 747 (1354)
Q Consensus 669 ~-~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~ 747 (1354)
+ ...|--|.+.-+-..+-+..++.+-..+|..-.. | -+...||||||.||+||-..++.|||+||||||
T Consensus 663 L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAH-------T---ikikdLSGGQKaRValaeLal~~PDvlILDEPT 732 (807)
T KOG0066|consen 663 LNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAH-------T---IKIKDLSGGQKARVALAELALGGPDVLILDEPT 732 (807)
T ss_pred hccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccc-------e---EeeeecCCcchHHHHHHHHhcCCCCEEEecCCC
Confidence 2 2347777775433334444455666666543221 2 245679999999999999999999999999999
Q ss_pred CCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhc-CEEEEEeCCeEEE-ecChHHHH
Q 000680 748 SAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQ-SGNYQELL 806 (1354)
Q Consensus 748 s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~-d~i~~l~~G~i~~-~g~~~~l~ 806 (1354)
++||.++...+-+. ++.. +..||+||||-..+... -..+|+++-.|-+ .|.++++.
T Consensus 733 NNLDIESIDALaEA-Iney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeDYk 790 (807)
T KOG0066|consen 733 NNLDIESIDALAEA-INEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFEDYK 790 (807)
T ss_pred CCcchhhHHHHHHH-HHhc--cCcEEEEecccceeeecCceEEEEccCChhhccccHHHHH
Confidence 99999998876543 3332 34899999999998775 4567777766653 56666654
No 430
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=5.4e-21 Score=220.12 Aligned_cols=200 Identities=23% Similarity=0.381 Sum_probs=162.4
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCC--
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTS-- 667 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~~-- 667 (1354)
...+++.+++|.|+++.. +.+.++++++..-+..+++|+||+||||+++++.|+..|..|.+.+.+ +++|-.|.-
T Consensus 360 ~p~l~i~~V~f~y~p~~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd 438 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVD 438 (582)
T ss_pred CCeeEEEeeeccCCCcch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhh
Confidence 356899999999997654 799999999999999999999999999999999999999999998887 699999974
Q ss_pred CCC-CCcHHHHHhcCC-CCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 000680 668 WIQ-SGSIRDNILYGK-PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1354)
Q Consensus 668 ~~~-~~ti~eni~~g~-~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1354)
|+. +-+.-|-..-.. ...++.|++.+...+|..++..- ...+||||||-||++|.+...+|.+|+|||
T Consensus 439 ~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~----------si~~LSGGQKsrvafA~~~~~~PhlLVLDE 508 (582)
T KOG0062|consen 439 FLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQ----------SIASLSGGQKSRVAFAACTWNNPHLLVLDE 508 (582)
T ss_pred HHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhc----------cccccCCcchhHHHHHHHhcCCCcEEEecC
Confidence 321 112222222111 12678899999999998887642 246799999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEE-ecChHHH
Q 000680 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQ-SGNYQEL 805 (1354)
Q Consensus 746 p~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~-~g~~~~l 805 (1354)
||++||.++-..+-+-+ +. .+ -.||+||||.++++. |+.+.+.+||++.. .|..++.
T Consensus 509 PTNhLD~dsl~AL~~Al-~~-F~-GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~~~y 567 (582)
T KOG0062|consen 509 PTNHLDRDSLGALAKAL-KN-FN-GGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGIDKY 567 (582)
T ss_pred CCccccHHHHHHHHHHH-Hh-cC-CcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccHHHH
Confidence 99999999987765422 21 23 489999999999997 89999999999984 5555443
No 431
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.84 E-value=2.3e-21 Score=205.50 Aligned_cols=134 Identities=31% Similarity=0.467 Sum_probs=116.2
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCce
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1354)
|+|+||+++|.+ ..+++|+||+|++||.+.++|+|||||||+++.+.|++||++|+|+|||.||++++...||++|||
T Consensus 2 I~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 799999999973 359999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccccc-chhhhcC--CC-CCCC----HHHHHHHHHHcCCc--hHHhcCCCCcCCCCcccccc
Q 000680 1296 IPQEPTLFRG-SVRTNLD--PL-GLYS----DDEIWKALEKCQLK--TTISSLPNKLDSSGKLFSAA 1352 (1354)
Q Consensus 1296 VpQdp~LF~G-TIR~NLd--p~-~~~s----DeeI~~AL~~a~l~--~~I~~Lp~gldt~G~n~s~~ 1352 (1354)
|-|..-||.- ||.+||. |- ...+ ++.+.+-|+.++|. +|-...|..| ++|++=++|
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eL-SGGQQQRVG 145 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHEL-SGGQQQRVG 145 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhc-CcchhhHHH
Confidence 9999999965 9999994 32 1123 45677889999996 5888889876 445544444
No 432
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.84 E-value=8.5e-21 Score=213.07 Aligned_cols=137 Identities=32% Similarity=0.549 Sum_probs=120.7
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCce
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1354)
|+++|++++|+.+..++|+|+||+|++||.+||+|++|||||||+++|.|++.|++|+|.+||.|+...+...+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 57999999996544569999999999999999999999999999999999999999999999999999888889999999
Q ss_pred ecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1296 IPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1296 VpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
+||+|.+|+.|+++||.... ..+.+++.++++..++.+++..+|.|+++ ...++|-|
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG 142 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGG 142 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHH
Confidence 99999999999999997432 24567788889999999999999888765 45666643
No 433
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.83 E-value=8.7e-21 Score=197.81 Aligned_cols=128 Identities=34% Similarity=0.520 Sum_probs=110.6
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCC-CCChHHHhccC
Q 000680 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDIC-SMGLKDLRVKL 1293 (1354)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~-~i~l~~LR~~i 1293 (1354)
-|+++||+.+|.. ..||||||++|++||.|.|+||||||||||+.+|.++-+|++|+|.|||.++. +.++..+|+++
T Consensus 2 mi~i~~l~K~fg~--~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGD--KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCC--eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 4899999999964 35999999999999999999999999999999999999999999999998874 34899999999
Q ss_pred ceeccccccccc-chhhhcC--CCC--CCC----HHHHHHHHHHcCCchHHhcCCCCcCC
Q 000680 1294 SIIPQEPTLFRG-SVRTNLD--PLG--LYS----DDEIWKALEKCQLKTTISSLPNKLDS 1344 (1354)
Q Consensus 1294 siVpQdp~LF~G-TIR~NLd--p~~--~~s----DeeI~~AL~~a~l~~~I~~Lp~gldt 1344 (1354)
|+|+|...||.- |+-+|+. |-. ..+ ++.-.+.|++++|.|.....|..|..
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSG 139 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSG 139 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCc
Confidence 999999999976 9999984 211 112 33456789999999999999988754
No 434
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=1.6e-20 Score=209.75 Aligned_cols=130 Identities=36% Similarity=0.593 Sum_probs=117.9
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccC
Q 000680 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1354)
Q Consensus 1214 G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~i 1293 (1354)
|+|+++|++++|..+ .++|+|+||+|++||.+||+|++|||||||+++|.|+.+|++|+|.+||.++.+.+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 1 GEIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred CeEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 579999999999633 3599999999999999999999999999999999999999999999999999998888999999
Q ss_pred ceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCCcCC
Q 000680 1294 SIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDS 1344 (1354)
Q Consensus 1294 siVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~gldt 1344 (1354)
+++||+|.+|.+|+++|+..+. ...++++.++++.+++.++++.+|+|+++
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 131 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDT 131 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccC
Confidence 9999999999999999996432 34577888999999999999999988875
No 435
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.83 E-value=6.2e-18 Score=191.56 Aligned_cols=222 Identities=15% Similarity=0.296 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHH
Q 000680 946 TASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLA 1025 (1354)
Q Consensus 946 ~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~ 1025 (1354)
++...+.....+...+.+.+..+++++++++++++.|.+||+++++|+++||+++|++.+++.+...+..++..+..+++
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~ 131 (275)
T PF00664_consen 52 LLIFLFSYIYFYLSSRISQRIRKDLRKRLFEKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIF 131 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhh
Confidence 33444445555556788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHH
Q 000680 1026 IIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVD 1105 (1354)
Q Consensus 1026 ~i~v~~~~~~~l~l~~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d 1105 (1354)
.+++++..+|+++++.+...+++.++..++.+..++..+...+..++..+++.|.++|+++||+|+.|+++.+++.+..+
T Consensus 132 ~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~ 211 (275)
T PF00664_consen 132 SLILLFFISWKLALILLIILPLLFLISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALE 211 (275)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHH
T ss_pred hhhcccccccccccccchhhhhhHhhhhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-hcCCccChhHHHHHHHHHHHHHHHH
Q 000680 1106 IDASLFFHTNGVMEWLILRVEALQNLTLFTA-ALFLVL-IPRGYVAPGLVGLSLSYAFTLTGTQ 1167 (1354)
Q Consensus 1106 ~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~-~~~~vl-~~~g~ls~g~~gl~l~ya~~l~~~l 1167 (1354)
+..+........+.|.....+.+..+....+ .+.... ...|.+++|.+..+++|...+.+|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 212 KYRKASFKYAKIQALLSSISQFISYLSIVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 9999998888888898888888777744333 334556 6789999999999999998888774
No 436
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.9e-20 Score=204.99 Aligned_cols=131 Identities=27% Similarity=0.469 Sum_probs=113.0
Q ss_pred EEEEEEEEEeCCC---CCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCC---hHHH
Q 000680 1216 IELRQLKIRYRPN---APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG---LKDL 1289 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~---~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~---l~~L 1289 (1354)
|+|+||+..|... ...+|+||||+|++||..||||+||||||||+.++-|+-+|++|+|.+||.||..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999752 246999999999999999999999999999999999999999999999999888776 6667
Q ss_pred hccCceecccccccc-cchhhhcC-CCC--CCCHH----HHHHHHHHcCCchHHhcCCCCcCCCC
Q 000680 1290 RVKLSIIPQEPTLFR-GSVRTNLD-PLG--LYSDD----EIWKALEKCQLKTTISSLPNKLDSSG 1346 (1354)
Q Consensus 1290 R~~isiVpQdp~LF~-GTIR~NLd-p~~--~~sDe----eI~~AL~~a~l~~~I~~Lp~gldt~G 1346 (1354)
|++||+|+|++-|++ -|+.+|+. |.. ..+.+ .+.+.|+.+||.|.-..-|..|..+.
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQ 146 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQ 146 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcch
Confidence 899999999999998 69999995 542 23444 45678999999999988888765443
No 437
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.83 E-value=1.6e-21 Score=213.94 Aligned_cols=181 Identities=15% Similarity=0.134 Sum_probs=121.7
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCCCCC-CCc
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQ-SGS 673 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~i~yv~Q~~~~~-~~t 673 (1354)
++++|.. +|. ...+++++++ ++++|+|||||||||++++|.-.+-...... ..++++|++|+.... +.|
T Consensus 6 l~l~nfk-~~~---~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~-~~~~i~~~~~~~~~~~~~~ 75 (212)
T cd03274 6 LVLENFK-SYA---GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKM-RQKKLSDLIHNSAGHPNLD 75 (212)
T ss_pred EEEECcc-cCC---CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHh-hhhhHHHHhcCCCCCCCCc
Confidence 4555543 454 3457888887 8999999999999999999972111100011 124689999987653 457
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHhcc-------------HHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhc----
Q 000680 674 IRDNILYGKPMDKARYDKAIKACAL-------------DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN---- 736 (1354)
Q Consensus 674 i~eni~~g~~~~~~~~~~~~~~~~l-------------~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~---- 736 (1354)
++++..+-...... ..++..+. ..++..++++.+ .+...||||||||++||||++.
T Consensus 76 ~~~~~~~~~~~~~~---~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~----~~~~~lS~G~~~r~~la~al~~~~~~ 148 (212)
T cd03274 76 SCSVEVHFQEIIDK---PLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSW----KNISNLSGGEKTLSSLALVFALHHYK 148 (212)
T ss_pred eEEEEEEEEeCCCH---HHHHHCCcCCCCCceEEcCCcEEEeeccccccc----cchhhcCHHHHHHHHHHHHHHhcccC
Confidence 77776653321100 00100000 011222333322 3466899999999999999974
Q ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeC
Q 000680 737 DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEG 793 (1354)
Q Consensus 737 ~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~ 793 (1354)
+|++++|||||++||++..+.+.+.+.. ..++.|+|++||+.+....||++++|..
T Consensus 149 ~p~ililDEPt~gLD~~~~~~l~~~l~~-~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 149 PTPLYVMDEIDAALDFRNVSIVANYIKE-RTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHH-HcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 5899999999999999999988765544 4567799999999877777999999953
No 438
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.83 E-value=2.3e-20 Score=204.59 Aligned_cols=123 Identities=27% Similarity=0.468 Sum_probs=108.8
Q ss_pred EEEEEEEEEeCCCC---CCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhcc
Q 000680 1216 IELRQLKIRYRPNA---PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVK 1292 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~---~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~ 1292 (1354)
|+++||+++|.+.. +++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 57999999997542 3699999999999999999999999999999999999999999999999 6
Q ss_pred CceecccccccccchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCccccc
Q 000680 1293 LSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSA 1351 (1354)
Q Consensus 1293 isiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~ 1351 (1354)
++++||+|.+|++|+++|+......++++.+++++.+++.+++..+|.|+++ ...++|.
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~ 130 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSG 130 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCH
Confidence 9999999999999999999865455677888999999999999999988765 3445554
No 439
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.83 E-value=4.1e-20 Score=209.32 Aligned_cols=179 Identities=22% Similarity=0.351 Sum_probs=137.5
Q ss_pred eeEEEeCCCCCCCcceeeeEEee-----CCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCC-CCCCC
Q 000680 599 EGNFSWDPELAIPTLRGVNLDIK-----WAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTS-WIQSG 672 (1354)
Q Consensus 599 ~~~f~~~~~~~~~~l~~i~l~i~-----~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~i~yv~Q~~-~~~~~ 672 (1354)
+.-++|+.- ...+.+..|++. .||+++++||||-||||+.+.|+|.++|++|. ..+-+|+|=||-- --+++
T Consensus 340 ~~lv~y~~~--~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~~~~~vSyKPQyI~~~~~g 416 (591)
T COG1245 340 DTLVEYPDL--KKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-EEDLKVSYKPQYISPDYDG 416 (591)
T ss_pred ceeeecchh--eeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC-CccceEeecceeecCCCCC
Confidence 344556542 235667777655 46889999999999999999999999999998 5555899999963 34899
Q ss_pred cHHHHHhcCCC--CCHHHHH-HHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 000680 673 SIRDNILYGKP--MDKARYD-KAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749 (1354)
Q Consensus 673 ti~eni~~g~~--~~~~~~~-~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~ 749 (1354)
||++-+.-..+ +...+|+ ++++-..|++-++ .+..+||||+.|||++|-||.+++|+||||||.+.
T Consensus 417 tV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e-----------~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~ 485 (591)
T COG1245 417 TVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLE-----------RPVDELSGGELQRVAIAAALSREADLYLLDEPSAY 485 (591)
T ss_pred cHHHHHHHhhhhhcccchhHHhhcCccchHHHHh-----------cccccCCchhHHHHHHHHHhccccCEEEecCchhh
Confidence 99998764322 3334443 4555555655444 45678999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHH--hcCCcEEEEEcCCcchhhh-cCEEEEEe
Q 000680 750 VDAHTAATLFNECVMA--ALEKKTVILVTHQVEFLSE-VDRILVLE 792 (1354)
Q Consensus 750 lD~~~~~~i~~~~~~~--~~~~~tvilvtH~~~~l~~-~d~i~~l~ 792 (1354)
||.+.+-.+- .+++. ..+++|.++|-||+-.+.. +||++|.+
T Consensus 486 LDvEqR~~va-kvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 486 LDVEQRIIVA-KVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred ccHHHHHHHH-HHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 9998766543 34433 2357899999999999998 79999985
No 440
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.82 E-value=3.3e-20 Score=206.69 Aligned_cols=140 Identities=31% Similarity=0.515 Sum_probs=119.5
Q ss_pred CcceEEEEEEEEEeCCC-CCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHh
Q 000680 1212 FKGRIELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLR 1290 (1354)
Q Consensus 1212 ~~G~I~f~nVsf~Y~~~-~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR 1290 (1354)
..|.++++|++++|+.. ..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+....|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 45789999999999642 23599999999999999999999999999999999999999999999999999988888889
Q ss_pred ccCceecccccccccchhhhcCC-CCCCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCccccc
Q 000680 1291 VKLSIIPQEPTLFRGSVRTNLDP-LGLYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSA 1351 (1354)
Q Consensus 1291 ~~isiVpQdp~LF~GTIR~NLdp-~~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~ 1351 (1354)
++++++||+|.+|.+|+++|++. ....+.+++++..+..++.++++.+|.|+++ ...++|-
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSg 153 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSG 153 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCH
Confidence 99999999999999999999973 2233456677777788888999988877654 3445553
No 441
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=3.6e-20 Score=207.85 Aligned_cols=135 Identities=34% Similarity=0.598 Sum_probs=120.0
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCce
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1354)
|+++|++++|..+ ..+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++++.+...+|+.+++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 5799999999643 349999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccccchhhhcCCC-CCCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCccccc
Q 000680 1296 IPQEPTLFRGSVRTNLDPL-GLYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSA 1351 (1354)
Q Consensus 1296 VpQdp~LF~GTIR~NLdp~-~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~ 1351 (1354)
+||+|.+|++|+++|+... ...+++++.++++.+++.+.+..+|.|+++ ...++|.
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~ 140 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSG 140 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCH
Confidence 9999999999999999633 235678889999999999999999998776 3445554
No 442
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.82 E-value=6.2e-20 Score=199.29 Aligned_cols=159 Identities=14% Similarity=0.138 Sum_probs=113.4
Q ss_pred ceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCC-----cE----EEE----cCeEEEEeCCCCCCCCcHHHHHh
Q 000680 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS-----GT----VNL----YGSIAYVSQTSWIQSGSIRDNIL 679 (1354)
Q Consensus 613 l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~-----G~----i~~----~g~i~yv~Q~~~~~~~ti~eni~ 679 (1354)
++++++++.+| +.+|+||||||||||+.+|...+.... |. +.- ...|.+.+|+.-+.. |
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~-- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N-- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C--
Confidence 46778888887 889999999999999999874322211 21 000 124777777654333 1
Q ss_pred cCCCC--CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH----hcCCCEEEEeCCCCCcCHH
Q 000680 680 YGKPM--DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV----YNDADIYLFDDPFSAVDAH 753 (1354)
Q Consensus 680 ~g~~~--~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal----~~~~~illLDep~s~lD~~ 753 (1354)
... ..++.+++++. .+ ...++..+||||||||++||||+ +.+|++++||||+++||+.
T Consensus 84 --~~~~~~~~~~~~~l~~------------~~--~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~ 147 (198)
T cd03276 84 --PLCVLSQDMARSFLTS------------NK--AAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMV 147 (198)
T ss_pred --cCCHHHHHHHHHHhcc------------cc--ccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHH
Confidence 111 11222233322 11 12367789999999999999999 6999999999999999999
Q ss_pred HHHHHHHHHHHHhcC---CcEEEEEcCCcchhhhcCEEEEEeCCe
Q 000680 754 TAATLFNECVMAALE---KKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1354)
Q Consensus 754 ~~~~i~~~~~~~~~~---~~tvilvtH~~~~l~~~d~i~~l~~G~ 795 (1354)
....+.+.+.....+ ++|+|++||+++.+...|+|-+|..|+
T Consensus 148 ~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 148 NRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 999988765554332 358999999999999899999998754
No 443
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.82 E-value=2e-20 Score=193.97 Aligned_cols=132 Identities=27% Similarity=0.439 Sum_probs=112.6
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCC-----CEEEEcCeeCCC--CCh
Q 000680 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAG-----GSILIDGVDICS--MGL 1286 (1354)
Q Consensus 1214 G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~-----G~I~IDGvDI~~--i~l 1286 (1354)
..++++|+++-|.. ..+|+|||++|++++.+|++|||||||||++++|-|+.|..+ |+|.+||.||-+ ++.
T Consensus 6 ~~~~~~~l~~yYg~--~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYYGD--KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEECc--hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 36899999999963 359999999999999999999999999999999999999876 999999999987 579
Q ss_pred HHHhccCceecccccccccchhhhcCCC----CC---CCHHHHHHHHHHcCCchHHhcCCCCcCCCCcccc
Q 000680 1287 KDLRVKLSIIPQEPTLFRGSVRTNLDPL----GL---YSDDEIWKALEKCQLKTTISSLPNKLDSSGKLFS 1350 (1354)
Q Consensus 1287 ~~LR~~isiVpQdp~LF~GTIR~NLdp~----~~---~sDeeI~~AL~~a~l~~~I~~Lp~gldt~G~n~s 1350 (1354)
..||+++|+|+|.|.-|..||+||+... +. .=||-+.++|++|.|||-|. +.|+..+-.+|
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVK---DrL~~sa~~LS 151 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVK---DRLHKSALGLS 151 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhH---HHhhCCccCCC
Confidence 9999999999999999999999999532 11 12455788999999999885 44555444444
No 444
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.82 E-value=7.1e-20 Score=203.22 Aligned_cols=132 Identities=36% Similarity=0.612 Sum_probs=117.7
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccC
Q 000680 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1354)
Q Consensus 1214 G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~i 1293 (1354)
|+|+++|++++|.....++|+|+||+|++||.+||+|++|||||||+++|.|+.+|++|+|.+||.++.+++...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 56999999999964334599999999999999999999999999999999999999999999999999988888889999
Q ss_pred ceecccccccccchhhhcCCC-CCCCHHHHHHHHHHcCCchHHhcCCCCcCCC
Q 000680 1294 SIIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKALEKCQLKTTISSLPNKLDSS 1345 (1354)
Q Consensus 1294 siVpQdp~LF~GTIR~NLdp~-~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt~ 1345 (1354)
+++||+|.+|..|+++|+... ...+++++.++++..++.+....+|.|+++.
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 133 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQ 133 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccce
Confidence 999999999999999999633 2245677889999999999999999888763
No 445
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=6.5e-20 Score=205.52 Aligned_cols=129 Identities=30% Similarity=0.508 Sum_probs=115.6
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCce
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1354)
|+++|++++|.....++|+|+||++++||.+||+|++|||||||+++|.|++.|++|+|.+||.++.+.+.+.+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 57999999996443359999999999999999999999999999999999999999999999999998888889999999
Q ss_pred ecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCCcCC
Q 000680 1296 IPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDS 1344 (1354)
Q Consensus 1296 VpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~gldt 1344 (1354)
+||+|.+|.+|+++|+.... .++.+++.++++..++.++++.+|.|+++
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 130 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDT 130 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcce
Confidence 99999999999999997432 34667788889999999999999887764
No 446
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=3.6e-20 Score=195.64 Aligned_cols=136 Identities=31% Similarity=0.473 Sum_probs=114.8
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCC---hHHHhc
Q 000680 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG---LKDLRV 1291 (1354)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~---l~~LR~ 1291 (1354)
.|+++||+.+|+. ...+|+||||+|++||.|||+|+||||||||+++|.|+.+|++|+|.++|.+|.++. ++++|+
T Consensus 3 ~i~~~nl~k~yp~-~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPG-GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCC-CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 5899999999964 456999999999999999999999999999999999999999999999999999998 788899
Q ss_pred cCceeccccccccc-chhhhcC------------CCCCCCH---HHHHHHHHHcCCchHHhcCCCCcCCCCcccccc
Q 000680 1292 KLSIIPQEPTLFRG-SVRTNLD------------PLGLYSD---DEIWKALEKCQLKTTISSLPNKLDSSGKLFSAA 1352 (1354)
Q Consensus 1292 ~isiVpQdp~LF~G-TIR~NLd------------p~~~~sD---eeI~~AL~~a~l~~~I~~Lp~gldt~G~n~s~~ 1352 (1354)
++|+|+|.|-|-.. |+-+|+- -|+.++. .+..+||+++++.|+.-. ..+--++|+.=+++
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q-ra~~LSGGQQQRVa 157 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ-RASTLSGGQQQRVA 157 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH-HhccCCcchhHHHH
Confidence 99999999999876 8999972 1334443 357889999999987754 33445566655443
No 447
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.81 E-value=6.1e-20 Score=195.67 Aligned_cols=153 Identities=22% Similarity=0.209 Sum_probs=105.4
Q ss_pred eeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeE--EEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHH
Q 000680 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSI--AYVSQTSWIQSGSIRDNILYGKPMDKARYDKA 692 (1354)
Q Consensus 615 ~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~i--~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~ 692 (1354)
+..+...++.+.+|+||||||||++|.+|.=.+--.+-........ .+-...++-..++|+ +.|
T Consensus 14 ~~~~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~f------------ 79 (178)
T cd03239 14 DETVVGGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVE--ITF------------ 79 (178)
T ss_pred CCEEecCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEE--EEE------------
Confidence 3344443444999999999999999999853221110000000000 011111111111111 112
Q ss_pred HHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC
Q 000680 693 IKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY----NDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768 (1354)
Q Consensus 693 ~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~----~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~ 768 (1354)
...+..+|.||.|+| ||||||||++|||++. .+|+++++|||+++||++..+.+.+.+.....+
T Consensus 80 ------~~~~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~ 147 (178)
T cd03239 80 ------DKSYFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH 147 (178)
T ss_pred ------ECceEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 122678899999987 9999999999999985 799999999999999999999988765554445
Q ss_pred CcEEEEEcCCcchhhhcCEEEEEeC
Q 000680 769 KKTVILVTHQVEFLSEVDRILVLEG 793 (1354)
Q Consensus 769 ~~tvilvtH~~~~l~~~d~i~~l~~ 793 (1354)
|+|+|++||+.+.+..+|+++.+++
T Consensus 148 g~tiIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 148 TSQFIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred CCEEEEEECCHHHHhhCCeEEEEEE
Confidence 7899999999998888999999865
No 448
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.81 E-value=3.7e-19 Score=182.20 Aligned_cols=200 Identities=23% Similarity=0.364 Sum_probs=156.5
Q ss_pred CCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe-----------
Q 000680 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS----------- 659 (1354)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~----------- 659 (1354)
++.+|++.+..|+|+.. .|++-|+|++++.|....+||.|||||||||+++.|-.-...|.|.+.|+
T Consensus 10 ~~~aievsgl~f~y~~~--dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~S 87 (291)
T KOG2355|consen 10 SDFAIEVSGLQFKYKVS--DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESS 87 (291)
T ss_pred ccceEEEeccEEecccC--CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcccccccccc
Confidence 46789999999999864 48999999999999999999999999999999999987777788888662
Q ss_pred --EEEEeCC----------CCCC-CCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 660 --IAYVSQT----------SWIQ-SGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 660 --i~yv~Q~----------~~~~-~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
..|..-+ --+| +.++ +...||-. .+.+|-++.++...+ |+ .-+...+|-|||
T Consensus 88 gdl~YLGgeW~~~~~~agevplq~D~sa-e~mifgV~g~dp~Rre~LI~iLDI--dl-----------~WRmHkvSDGqr 153 (291)
T KOG2355|consen 88 GDLSYLGGEWSKTVGIAGEVPLQGDISA-EHMIFGVGGDDPERREKLIDILDI--DL-----------RWRMHKVSDGQR 153 (291)
T ss_pred CceeEecccccccccccccccccccccH-HHHHhhccCCChhHhhhhhhheec--cc-----------eEEEeeccccch
Confidence 3443321 1122 2233 44455543 345666665543221 22 245678999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1354)
+||.|+..|++.=+++||||.|-.||.-.+..+.+.+.... .+|.|+|.+||-.+-++. ..+++.|++|+++..-+|+
T Consensus 154 RRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~ 233 (291)
T KOG2355|consen 154 RRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQ 233 (291)
T ss_pred hhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccc
Confidence 99999999999999999999999999999999887665443 478999999999988876 8999999999999866666
Q ss_pred HHH
Q 000680 804 ELL 806 (1354)
Q Consensus 804 ~l~ 806 (1354)
++.
T Consensus 234 ~i~ 236 (291)
T KOG2355|consen 234 KIK 236 (291)
T ss_pred hhh
Confidence 554
No 449
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.81 E-value=1.1e-19 Score=204.35 Aligned_cols=129 Identities=36% Similarity=0.638 Sum_probs=115.1
Q ss_pred EEEEEEEEEeCCC-CCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCc
Q 000680 1216 IELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~-~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~is 1294 (1354)
|+++|++++|... ..++|+|+||++++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4789999999642 235999999999999999999999999999999999999999999999999999888888889999
Q ss_pred eecccccccccchhhhcCCC-CCCCHHHHHHHHHHcCCchHHhcCCCCcCC
Q 000680 1295 IIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKALEKCQLKTTISSLPNKLDS 1344 (1354)
Q Consensus 1295 iVpQdp~LF~GTIR~NLdp~-~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt 1344 (1354)
++||+|.+|++|+++|+... ...+++++.++++..++.+++..+|.|+++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 131 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDT 131 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccce
Confidence 99999999999999999632 234567788889999999999999988765
No 450
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.81 E-value=1.2e-19 Score=201.01 Aligned_cols=135 Identities=18% Similarity=0.285 Sum_probs=115.6
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCCh----HHHhc
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL----KDLRV 1291 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l----~~LR~ 1291 (1354)
+.+.|..++|.++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+. ...|+
T Consensus 1 ~~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 1 VQVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred CeeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 3578999999765 459999999999999999999999999999999999999999999999999887653 34678
Q ss_pred cCceecccccccccchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCccccc
Q 000680 1292 KLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSA 1351 (1354)
Q Consensus 1292 ~isiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~ 1351 (1354)
.++++||+|.+|+.|+++|+.....+++++.+++++.+++.+.+..+|.|+++ ...++|-
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~ 143 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSG 143 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCH
Confidence 89999999999999999999754445677788999999999999888888755 3445554
No 451
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.80 E-value=6.7e-20 Score=202.79 Aligned_cols=127 Identities=25% Similarity=0.431 Sum_probs=108.1
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChH---HHhcc
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK---DLRVK 1292 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~---~LR~~ 1292 (1354)
|+++|++++|+.+..++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+.+.+.. .+|++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999964434599999999999999999999999999999999999999999999999999877643 47889
Q ss_pred Cceeccccccccc-chhhhcCCC----CC---CCHHHHHHHHHHcCCchHHhcCCCCc
Q 000680 1293 LSIIPQEPTLFRG-SVRTNLDPL----GL---YSDDEIWKALEKCQLKTTISSLPNKL 1342 (1354)
Q Consensus 1293 isiVpQdp~LF~G-TIR~NLdp~----~~---~sDeeI~~AL~~a~l~~~I~~Lp~gl 1342 (1354)
++++||+|.+|.. |+++|+... +. ..++++.++++..++.++....|..|
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 139 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQL 139 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhC
Confidence 9999999999874 999999521 11 13467889999999988877766543
No 452
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.80 E-value=1.8e-19 Score=205.58 Aligned_cols=127 Identities=26% Similarity=0.432 Sum_probs=114.0
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCc
Q 000680 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1354)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~is 1294 (1354)
.|+++||+.+|.+.. ||+|||++|+.||.+++||||||||||++++|.|+.+|++|+|.|||.|+++++.++ +.|+
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 699999999996433 999999999999999999999999999999999999999999999999999999987 8999
Q ss_pred eeccccccccc-chhhhcC-CCCC------CCHHHHHHHHHHcCCchHHhcCCCCcCCC
Q 000680 1295 IIPQEPTLFRG-SVRTNLD-PLGL------YSDDEIWKALEKCQLKTTISSLPNKLDSS 1345 (1354)
Q Consensus 1295 iVpQdp~LF~G-TIR~NLd-p~~~------~sDeeI~~AL~~a~l~~~I~~Lp~gldt~ 1345 (1354)
+|+|+..||.- ||++||. |... --++++.++++..++.+.....|..|..+
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGG 137 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGG 137 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChh
Confidence 99999999976 9999995 2211 12667889999999999999999887654
No 453
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.80 E-value=1.3e-18 Score=201.61 Aligned_cols=205 Identities=21% Similarity=0.344 Sum_probs=165.0
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------- 658 (1354)
+..++++|.+..= +.+.+.++||||+|.+||+++|.|-.|-|-+-|+.+|.|+.++.+|+|.++|
T Consensus 255 ~~vL~V~~L~v~~--~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r 332 (501)
T COG3845 255 EVVLEVEDLSVKD--RRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERR 332 (501)
T ss_pred CeEEEEeeeEeec--CCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHH
Confidence 4457777777543 3335689999999999999999999999999999999999999999999987
Q ss_pred --eEEEEeCCC----CCCCCcHHHHHhcCCCC----------CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCCh
Q 000680 659 --SIAYVSQTS----WIQSGSIRDNILYGKPM----------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1354)
Q Consensus 659 --~i~yv~Q~~----~~~~~ti~eni~~g~~~----------~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSg 722 (1354)
.+||||.+. .....|+.||+.++.-. +...+++..+ .+-+.++--+.+.. .+..+|||
T Consensus 333 ~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~--~li~~fdVr~~~~~----~~a~~LSG 406 (501)
T COG3845 333 RLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR--ELIEEFDVRAPSPD----APARSLSG 406 (501)
T ss_pred hcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHH--HHHHHcCccCCCCC----cchhhcCC
Confidence 379999985 46788999999876432 2222222211 22222222233322 45678999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecC
Q 000680 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1354)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1354)
|++||+-+||-+..+||+++...||-|||....+.|.+.++....+|+.|++++-+++++-. ||||.||.+|+|+...+
T Consensus 407 GNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~ 486 (501)
T COG3845 407 GNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVP 486 (501)
T ss_pred cceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecccc
Confidence 99999999999999999999999999999999999999998888899999999999998755 99999999999997766
Q ss_pred hHH
Q 000680 802 YQE 804 (1354)
Q Consensus 802 ~~~ 804 (1354)
+++
T Consensus 487 ~~~ 489 (501)
T COG3845 487 PEE 489 (501)
T ss_pred ccc
Confidence 554
No 454
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.79 E-value=2e-19 Score=190.66 Aligned_cols=127 Identities=29% Similarity=0.513 Sum_probs=108.7
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChH---HHh
Q 000680 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK---DLR 1290 (1354)
Q Consensus 1214 G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~---~LR 1290 (1354)
-.|++++|+++|.. ..||+||||+|++||..||+|+||||||||++++.|+..|++|+|.|||.||.+++-+ .+|
T Consensus 7 ~~I~vr~v~~~fG~--~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 7 PLIEVRGVTKSFGD--RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred ceEEEeeeeeecCC--EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 36999999999953 3599999999999999999999999999999999999999999999999999999864 569
Q ss_pred ccCceeccccccccc-chhhhcC-CCCCC---CHHHHH----HHHHHcCCchH-HhcCCCCc
Q 000680 1291 VKLSIIPQEPTLFRG-SVRTNLD-PLGLY---SDDEIW----KALEKCQLKTT-ISSLPNKL 1342 (1354)
Q Consensus 1291 ~~isiVpQdp~LF~G-TIR~NLd-p~~~~---sDeeI~----~AL~~a~l~~~-I~~Lp~gl 1342 (1354)
+++|+++|..-||+. ||+||+. |..+| +++++. .-|+.+||..- -..+|.-|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsEL 146 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSEL 146 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhh
Confidence 999999999999988 9999995 55444 455544 46888999887 44556543
No 455
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=2e-19 Score=206.53 Aligned_cols=128 Identities=23% Similarity=0.413 Sum_probs=110.1
Q ss_pred eEEEEEEEEEeCCC-CCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccC
Q 000680 1215 RIELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1354)
Q Consensus 1215 ~I~f~nVsf~Y~~~-~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~i 1293 (1354)
.|+++||+++|+.. ..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999642 24599999999999999999999999999999999999999999999999999998888999999
Q ss_pred ceeccccc--ccccchhhhcCCCC---CCC----HHHHHHHHHHcCCchHHhcCCCCc
Q 000680 1294 SIIPQEPT--LFRGSVRTNLDPLG---LYS----DDEIWKALEKCQLKTTISSLPNKL 1342 (1354)
Q Consensus 1294 siVpQdp~--LF~GTIR~NLdp~~---~~s----DeeI~~AL~~a~l~~~I~~Lp~gl 1342 (1354)
+++||+|. ++..|+++||.... ..+ ++.+.++++.+++.++....|..|
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~L 141 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARL 141 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccC
Confidence 99999983 56779999996211 123 356889999999998887776543
No 456
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.8e-19 Score=203.28 Aligned_cols=121 Identities=20% Similarity=0.325 Sum_probs=105.2
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccC---CCCCEEEEcCeeCCCCChHHHhc
Q 000680 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE---PAGGSILIDGVDICSMGLKDLRV 1291 (1354)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e---~~~G~I~IDGvDI~~i~l~~LR~ 1291 (1354)
.|+++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++ |++|+|.+||.|+.+.+...+|+
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 4789999999953 359999999999999999999999999999999999985 69999999999999998888999
Q ss_pred cCceecccccccccchhhhcCCCC---C------CCHHHHHHHHHHcCCchHHhc
Q 000680 1292 KLSIIPQEPTLFRGSVRTNLDPLG---L------YSDDEIWKALEKCQLKTTISS 1337 (1354)
Q Consensus 1292 ~isiVpQdp~LF~GTIR~NLdp~~---~------~sDeeI~~AL~~a~l~~~I~~ 1337 (1354)
+++++||+|.+|..|+++|+.... . ..++++.++++.+++.+++..
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 134 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD 134 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH
Confidence 999999999999999999995321 1 123467889999999766543
No 457
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=1.7e-19 Score=206.56 Aligned_cols=127 Identities=24% Similarity=0.411 Sum_probs=110.7
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCc
Q 000680 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1354)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~is 1294 (1354)
-|+++||+++|+.+ .++|+||||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 48999999999633 35999999999999999999999999999999999999999999999999999988889999999
Q ss_pred eecccc--cccccchhhhcCCCC---CCC----HHHHHHHHHHcCCchHHhcCCCCc
Q 000680 1295 IIPQEP--TLFRGSVRTNLDPLG---LYS----DDEIWKALEKCQLKTTISSLPNKL 1342 (1354)
Q Consensus 1295 iVpQdp--~LF~GTIR~NLdp~~---~~s----DeeI~~AL~~a~l~~~I~~Lp~gl 1342 (1354)
++||+| .+|..|+++|+.... ..+ ++++.++++.+++.++..+.|..|
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~L 139 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHL 139 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhC
Confidence 999999 688899999996211 122 356789999999998887777643
No 458
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.79 E-value=3.2e-19 Score=196.24 Aligned_cols=121 Identities=33% Similarity=0.540 Sum_probs=105.3
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCc
Q 000680 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1354)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~is 1294 (1354)
.++.+|++|+|. ..++|+||||+|++||.++|+||+|||||||+++|.|+..|.+|+|++||.||.+++..++-++++
T Consensus 2 ~L~~~~ls~~y~--~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYG--GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEEC--CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 478999999996 346999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccc-cccchhhhcC----CC----CCCC--HH-HHHHHHHHcCCchHHhc
Q 000680 1295 IIPQEPTL-FRGSVRTNLD----PL----GLYS--DD-EIWKALEKCQLKTTISS 1337 (1354)
Q Consensus 1295 iVpQdp~L-F~GTIR~NLd----p~----~~~s--De-eI~~AL~~a~l~~~I~~ 1337 (1354)
+|||++.. |.-|++|=+- |+ ...+ |+ .+.+||+.+++.++..+
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r 134 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR 134 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC
Confidence 99999754 4558988762 32 2223 33 47789999999998765
No 459
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=4.4e-19 Score=195.39 Aligned_cols=136 Identities=32% Similarity=0.475 Sum_probs=116.6
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCC-CCChHHHhccC
Q 000680 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDIC-SMGLKDLRVKL 1293 (1354)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~-~i~l~~LR~~i 1293 (1354)
.|+++|++|+|.++ .++|+|+||+|++||.++|+|+||||||||+++|.|++.|++|.|.+||.|++ +.+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 58999999999877 67999999999999999999999999999999999999999999999999999 58999999999
Q ss_pred ceecccc--cccccchhhhcCCC--C-CCCHHH----HHHHHHHcCCchHHhcCCCCcCCCCcccccc
Q 000680 1294 SIIPQEP--TLFRGSVRTNLDPL--G-LYSDDE----IWKALEKCQLKTTISSLPNKLDSSGKLFSAA 1352 (1354)
Q Consensus 1294 siVpQdp--~LF~GTIR~NLdp~--~-~~sDee----I~~AL~~a~l~~~I~~Lp~gldt~G~n~s~~ 1352 (1354)
|+|.|+| .+|..||.+.+... + ..+.+| +.+||+.+++.++-..-|.. -++|+.=+++
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~-LSGGqkqRva 148 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFN-LSGGQKQRVA 148 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccc-cCCcceeeHH
Confidence 9999999 79999999999621 1 234444 77899999999986655554 4555544443
No 460
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.79 E-value=1.6e-19 Score=201.32 Aligned_cols=122 Identities=33% Similarity=0.541 Sum_probs=105.7
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhccc-----CCCCCEEEEcCeeCCCCC--hHH
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLV-----EPAGGSILIDGVDICSMG--LKD 1288 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~-----e~~~G~I~IDGvDI~~i~--l~~ 1288 (1354)
|+++||+++|+. . ++|+|+||+|++||++||+|++|||||||+++|.|++ +|++|+|.+||.++.+++ ...
T Consensus 1 i~~~~l~~~~~~-~-~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGD-K-HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCC-c-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 579999999964 2 5999999999999999999999999999999999999 999999999999998887 677
Q ss_pred HhccCceecccccccccchhhhcCCC----CCC----CHHHHHHHHHHcCCchHHhcCC
Q 000680 1289 LRVKLSIIPQEPTLFRGSVRTNLDPL----GLY----SDDEIWKALEKCQLKTTISSLP 1339 (1354)
Q Consensus 1289 LR~~isiVpQdp~LF~GTIR~NLdp~----~~~----sDeeI~~AL~~a~l~~~I~~Lp 1339 (1354)
+|++++++||+|.+|..|+++|+... +.. .++++.++++..++.+.....+
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 137 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRL 137 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccC
Confidence 89999999999999988999999531 111 2356788999999988776654
No 461
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=2.9e-19 Score=204.96 Aligned_cols=128 Identities=25% Similarity=0.413 Sum_probs=111.0
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCc
Q 000680 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1354)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~is 1294 (1354)
.++++||+++|+...+++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+.+...+|++|+
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 48999999999643446999999999999999999999999999999999999999999999999999988888999999
Q ss_pred eecccc--cccccchhhhcCCCC---CCC----HHHHHHHHHHcCCchHHhcCCCCc
Q 000680 1295 IIPQEP--TLFRGSVRTNLDPLG---LYS----DDEIWKALEKCQLKTTISSLPNKL 1342 (1354)
Q Consensus 1295 iVpQdp--~LF~GTIR~NLdp~~---~~s----DeeI~~AL~~a~l~~~I~~Lp~gl 1342 (1354)
++||+| .+++.|+++||.... ..+ ++++.++++.+++.+++...|..|
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~L 141 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRL 141 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccC
Confidence 999998 466789999995311 123 345788999999999988877654
No 462
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=3.2e-19 Score=200.66 Aligned_cols=124 Identities=33% Similarity=0.500 Sum_probs=107.4
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCc
Q 000680 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1354)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~is 1294 (1354)
.++++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+..++...+|++++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 5899999999953 35999999999999999999999999999999999999999999999999999888888999999
Q ss_pred eecccccccccchhhhcCCC---CCCCHHHHHHHHHHcCCc-hHHhcCCC
Q 000680 1295 IIPQEPTLFRGSVRTNLDPL---GLYSDDEIWKALEKCQLK-TTISSLPN 1340 (1354)
Q Consensus 1295 iVpQdp~LF~GTIR~NLdp~---~~~sDeeI~~AL~~a~l~-~~I~~Lp~ 1340 (1354)
++||+|.+|.+|+++|+... ....++++.++++..++. +.....|.
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 130 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVK 130 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcc
Confidence 99999999999999999632 112356788899999996 44444333
No 463
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.78 E-value=3.7e-19 Score=208.12 Aligned_cols=127 Identities=26% Similarity=0.434 Sum_probs=108.3
Q ss_pred EEEEEEEEEeCCC--CCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHH---Hh
Q 000680 1216 IELRQLKIRYRPN--APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---LR 1290 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~--~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~---LR 1290 (1354)
|+++||+++|+.+ ..++|+||||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.||.+++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7999999999632 236999999999999999999999999999999999999999999999999999987654 58
Q ss_pred ccCceecccccccc-cchhhhcC-CC--CCCC----HHHHHHHHHHcCCchHHhcCCCCc
Q 000680 1291 VKLSIIPQEPTLFR-GSVRTNLD-PL--GLYS----DDEIWKALEKCQLKTTISSLPNKL 1342 (1354)
Q Consensus 1291 ~~isiVpQdp~LF~-GTIR~NLd-p~--~~~s----DeeI~~AL~~a~l~~~I~~Lp~gl 1342 (1354)
++|++|||++.+|. .|+++|+. |. ...+ ++++.++|+.+++.+.....|..|
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~L 141 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNL 141 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhC
Confidence 89999999999995 69999995 22 1122 345788999999998877777654
No 464
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.78 E-value=7.1e-16 Score=174.63 Aligned_cols=269 Identities=20% Similarity=0.213 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 280 IFIAICALLRTIAVVVGPLLLYAFVNYSNRGEEN-LQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVY 358 (1354)
Q Consensus 280 ~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~-~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~~~iy 358 (1354)
++..++.++..+...+.|+++..+++...++..+ ....+.++..+++..++...+...+.+...+.+.+++..+...+|
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLF 81 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888888999999999986554333 344555555555555566666666666688999999999999999
Q ss_pred HHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHH
Q 000680 359 QKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSL-ALQLFLAIGVLFGVVGL-GALPGLVLFLICGLLNVP 436 (1354)
Q Consensus 359 ~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~~~~~w~~-plqi~~~~~~L~~~lG~-~~l~gl~v~~i~~~l~~~ 436 (1354)
+|.++.+....+++++|+++|.++.|++++.+........+.. .+.++.++++++ .++| .+++.++++.+..++...
T Consensus 82 ~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~l~~l~~~~~~~~~~~~ 160 (275)
T PF00664_consen 82 EKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLF-FISWKLALILLIILPLLFLISFI 160 (275)
T ss_dssp HHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhccc-ccccccccccchhhhhhHhhhhh
Confidence 9999998876667889999999999999999977654444433 344444444443 3343 333444455555666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 000680 437 FAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTV-IYWMSPTIIS 515 (1354)
Q Consensus 437 ~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~-~~~~~p~~v~ 515 (1354)
+.+..++..++..+..+++.+.++|.++|+|+||.|++|+.+.++.++.+++..+..++.......... ..........
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (275)
T PF00664_consen 161 FSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIV 240 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999988887765554444333333222 2222222222
Q ss_pred HHHHHHHHH-hCCCCCCHHHHHHHHHHHHHHHHHH
Q 000680 516 SVIFLGCAL-TGSAPLNASTIFTVLATLRSMGEPV 549 (1354)
Q Consensus 516 ~~~f~~~~l-~~~~~Lt~~~~Ft~l~lf~~l~~pl 549 (1354)
.+.+.+..+ ..++.++++.+++.+.+++.+..|+
T Consensus 241 ~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 241 LILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 333333344 4558999999999999999999886
No 465
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.78 E-value=3e-19 Score=197.89 Aligned_cols=127 Identities=28% Similarity=0.448 Sum_probs=105.8
Q ss_pred EEEEEEEEEeCCCC--CCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHH----H
Q 000680 1216 IELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD----L 1289 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~--~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~----L 1289 (1354)
|+++||+++|.++. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+.+.+. .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999996431 35999999999999999999999999999999999999999999999999999887443 4
Q ss_pred hccCceeccccccccc-chhhhcCCC---CCC----CHHHHHHHHHHcCCchHHhcCCCCc
Q 000680 1290 RVKLSIIPQEPTLFRG-SVRTNLDPL---GLY----SDDEIWKALEKCQLKTTISSLPNKL 1342 (1354)
Q Consensus 1290 R~~isiVpQdp~LF~G-TIR~NLdp~---~~~----sDeeI~~AL~~a~l~~~I~~Lp~gl 1342 (1354)
|++++++||+|.+|.+ |+++|+... ... .++++.++++..++.+.....|..|
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 141 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSEL 141 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhc
Confidence 6789999999999987 999998521 111 2456888999999987776655433
No 466
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.78 E-value=3.3e-19 Score=195.57 Aligned_cols=122 Identities=25% Similarity=0.384 Sum_probs=104.4
Q ss_pred EEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCcee
Q 000680 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSII 1296 (1354)
Q Consensus 1217 ~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiV 1296 (1354)
+++|++++|..+ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.. ...|++++++
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 478999999642 359999999999999999999999999999999999999999999999999865 4678899999
Q ss_pred cccc--cccccchhhhcCCCC---CCCHHHHHHHHHHcCCchHHhcCCCCc
Q 000680 1297 PQEP--TLFRGSVRTNLDPLG---LYSDDEIWKALEKCQLKTTISSLPNKL 1342 (1354)
Q Consensus 1297 pQdp--~LF~GTIR~NLdp~~---~~sDeeI~~AL~~a~l~~~I~~Lp~gl 1342 (1354)
||+| .+|..|+++|+.... ...++++.++++..++.++....|..|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 127 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSL 127 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhC
Confidence 9998 467899999996321 123467899999999998887777654
No 467
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=5.9e-19 Score=201.89 Aligned_cols=128 Identities=27% Similarity=0.442 Sum_probs=108.8
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCc
Q 000680 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1354)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~is 1294 (1354)
.|+++|++++|.++..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+...+|++++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 59999999999644446999999999999999999999999999999999999999999999999999888888999999
Q ss_pred eecccc--cccccchhhhcCCC---CCCCHH----HHHHHHHHcCCchHHhcCCCCc
Q 000680 1295 IIPQEP--TLFRGSVRTNLDPL---GLYSDD----EIWKALEKCQLKTTISSLPNKL 1342 (1354)
Q Consensus 1295 iVpQdp--~LF~GTIR~NLdp~---~~~sDe----eI~~AL~~a~l~~~I~~Lp~gl 1342 (1354)
++||+| .++..|+++|+... ...+++ .+.++++..++.++....|..|
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 143 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNL 143 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccC
Confidence 999998 45577999999531 112333 3667889999988877766543
No 468
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.78 E-value=3.2e-19 Score=204.73 Aligned_cols=133 Identities=25% Similarity=0.392 Sum_probs=114.6
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccC
Q 000680 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1354)
Q Consensus 1214 G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~i 1293 (1354)
..|+++||+.+|. ...+++||||+|++||.+.++|||||||||++++|.||..|++|+|.|||.||..++.+ ++.|
T Consensus 4 ~~l~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred ceEEEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 4699999999997 34599999999999999999999999999999999999999999999999999999888 5999
Q ss_pred ceeccccccccc-chhhhcCC-CC---CCCHH----HHHHHHHHcCCchHHhcCCCCcCCCCccccc
Q 000680 1294 SIIPQEPTLFRG-SVRTNLDP-LG---LYSDD----EIWKALEKCQLKTTISSLPNKLDSSGKLFSA 1351 (1354)
Q Consensus 1294 siVpQdp~LF~G-TIR~NLdp-~~---~~sDe----eI~~AL~~a~l~~~I~~Lp~gldt~G~n~s~ 1351 (1354)
++|+||.-||.- ||++|+.. .. ...++ .+.++|+.+++.++-...|..+. +|++=++
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLS-GGQqQRV 145 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLS-GGQQQRV 145 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhC-hHHHHHH
Confidence 999999999965 99999852 11 12333 67899999999999999988764 4444443
No 469
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=3.5e-19 Score=199.36 Aligned_cols=127 Identities=25% Similarity=0.401 Sum_probs=106.7
Q ss_pred eEEEEEEEEEeCCCC--CCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHH---H
Q 000680 1215 RIELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---L 1289 (1354)
Q Consensus 1215 ~I~f~nVsf~Y~~~~--~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~---L 1289 (1354)
-++++||+++|..+. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+++.+. +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999996432 35999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-ccCceeccccccccc-chhhhcCC---CCCC----CHHHHHHHHHHcCCchHHhcCCCC
Q 000680 1290 R-VKLSIIPQEPTLFRG-SVRTNLDP---LGLY----SDDEIWKALEKCQLKTTISSLPNK 1341 (1354)
Q Consensus 1290 R-~~isiVpQdp~LF~G-TIR~NLdp---~~~~----sDeeI~~AL~~a~l~~~I~~Lp~g 1341 (1354)
| ++++++||+|.+|.+ |+++|+.. +... .++++.++++..++.+.....|..
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 145 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSE 145 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhh
Confidence 3 689999999999976 99999852 1111 234678999999998776665543
No 470
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.78 E-value=2.5e-16 Score=184.16 Aligned_cols=255 Identities=19% Similarity=0.188 Sum_probs=164.3
Q ss_pred HHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHh--cCCccChhHH
Q 000680 1079 ETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF-L--VLI--PRGYVAPGLV 1153 (1354)
Q Consensus 1079 Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~-~--vl~--~~g~ls~g~~ 1153 (1354)
+...+...|--|+.+......-++..++.............|+.+..++...+..++..+. + +.. ..+.+++..+
T Consensus 270 rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL 349 (659)
T KOG0060|consen 270 RLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAEL 349 (659)
T ss_pred eeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcCHHHH
Confidence 3445566677777655554444444444444444445556677766555443221111000 0 000 2356676655
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCC-----------------CCCCCCC-CCCCCCCCC
Q 000680 1154 GLSLSYA----FTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPP-----------------EPPAIVE-DKRPPSSWP 1211 (1354)
Q Consensus 1154 gl~l~ya----~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~-----------------E~~~~~~-~~~~~~~wp 1211 (1354)
---+++. ..+.+.+..++....++..-..-..||.|+.+.-. |..+..+ ....+..||
T Consensus 350 ~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~ 429 (659)
T KOG0060|consen 350 SGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEP 429 (659)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCccccc
Confidence 4433332 22333333444444444444556678888764210 1111100 111245678
Q ss_pred CcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEc--CeeCCCCChHHH
Q 000680 1212 FKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILID--GVDICSMGLKDL 1289 (1354)
Q Consensus 1212 ~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~ID--GvDI~~i~l~~L 1289 (1354)
....|+|++|++.=+.+.+...+|+||+|+.|+.+-|+|+||||||||+..|.++++..+|+|.-- |-+
T Consensus 430 ~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~--------- 500 (659)
T KOG0060|consen 430 ADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP--------- 500 (659)
T ss_pred ccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC---------
Confidence 888999999999986656656677999999999999999999999999999999999999999753 322
Q ss_pred hccCceecccccccccchhhhcC-CC-------CCCCHHHHHHHHHHcCCchHHhcCCCCcCC
Q 000680 1290 RVKLSIIPQEPTLFRGSVRTNLD-PL-------GLYSDDEIWKALEKCQLKTTISSLPNKLDS 1344 (1354)
Q Consensus 1290 R~~isiVpQdp~LF~GTIR~NLd-p~-------~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt 1344 (1354)
+.+=++||-|+.=.||+|+-+- |. +..+|++|.+.|+.+++.+.+. ..+|+|.
T Consensus 501 -~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~-r~ggld~ 561 (659)
T KOG0060|consen 501 -KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLE-REGGLDQ 561 (659)
T ss_pred -CceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHH-HhCCCCc
Confidence 4588999999999999999983 42 1368999999999999987654 4688884
No 471
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.78 E-value=4.4e-19 Score=195.98 Aligned_cols=126 Identities=24% Similarity=0.389 Sum_probs=107.2
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChH---HHhcc
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK---DLRVK 1292 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~---~LR~~ 1292 (1354)
++++|++++|+.+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+++.. .+|++
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 7899999999533 3599999999999999999999999999999999999999999999999999987643 47889
Q ss_pred Cceecccccccc-cchhhhcCCC----C---CCCHHHHHHHHHHcCCchHHhcCCCCc
Q 000680 1293 LSIIPQEPTLFR-GSVRTNLDPL----G---LYSDDEIWKALEKCQLKTTISSLPNKL 1342 (1354)
Q Consensus 1293 isiVpQdp~LF~-GTIR~NLdp~----~---~~sDeeI~~AL~~a~l~~~I~~Lp~gl 1342 (1354)
++++||+|.+|. .|+++|+... + ...+++++++++..++.+.....|..|
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 138 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQL 138 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhC
Confidence 999999999996 5999998521 1 112467889999999988776666543
No 472
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=5e-19 Score=206.11 Aligned_cols=124 Identities=22% Similarity=0.323 Sum_probs=101.7
Q ss_pred ceEEEEEEEEEeCCC---CCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCC------
Q 000680 1214 GRIELRQLKIRYRPN---APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM------ 1284 (1354)
Q Consensus 1214 G~I~f~nVsf~Y~~~---~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i------ 1284 (1354)
..|+++|++++|+.. ..++|+||||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||+|+.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 369999999999642 23599999999999999999999999999999999999999999999999999763
Q ss_pred ----------ChHHHhccCceecccc--cccccchhhhcCCC--C-CCCHH----HHHHHHHHcCCc-hHHhc
Q 000680 1285 ----------GLKDLRVKLSIIPQEP--TLFRGSVRTNLDPL--G-LYSDD----EIWKALEKCQLK-TTISS 1337 (1354)
Q Consensus 1285 ----------~l~~LR~~isiVpQdp--~LF~GTIR~NLdp~--~-~~sDe----eI~~AL~~a~l~-~~I~~ 1337 (1354)
....+|+++++|||+| .+|++|+++|+... . ..+++ .+.++++..++. ++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcC
Confidence 4567899999999998 69999999999521 1 12333 345677777775 34433
No 473
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.78 E-value=4.6e-19 Score=196.74 Aligned_cols=123 Identities=24% Similarity=0.364 Sum_probs=103.0
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCce
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1354)
|+++||+++|..+..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.. ..+|+++++
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEEE
Confidence 5799999999643245999999999999999999999999999999999999999999999999998753 677889999
Q ss_pred eccccccc-ccchhhhcCCCC---CCC----HHHHHHHHHHcCCchHHhcCC
Q 000680 1296 IPQEPTLF-RGSVRTNLDPLG---LYS----DDEIWKALEKCQLKTTISSLP 1339 (1354)
Q Consensus 1296 VpQdp~LF-~GTIR~NLdp~~---~~s----DeeI~~AL~~a~l~~~I~~Lp 1339 (1354)
+||+|.+| ..|+++|+.... ..+ ++++.++++..++.+.....+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 131 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRA 131 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChh
Confidence 99999999 579999984211 112 346788999999877655444
No 474
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.78 E-value=3.6e-19 Score=196.72 Aligned_cols=126 Identities=28% Similarity=0.394 Sum_probs=106.4
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCCh---HHHhcc
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL---KDLRVK 1292 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l---~~LR~~ 1292 (1354)
++++|++++|+.+ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+...+. ...|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4789999999643 359999999999999999999999999999999999999999999999999988764 357889
Q ss_pred Cceeccccccccc-chhhhcCCC---CCC----CHHHHHHHHHHcCCchHHhcCCCCc
Q 000680 1293 LSIIPQEPTLFRG-SVRTNLDPL---GLY----SDDEIWKALEKCQLKTTISSLPNKL 1342 (1354)
Q Consensus 1293 isiVpQdp~LF~G-TIR~NLdp~---~~~----sDeeI~~AL~~a~l~~~I~~Lp~gl 1342 (1354)
+++|||+|.+|.+ |+++|+... ... .++++.++++..++.+.....|..+
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 137 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAEL 137 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhc
Confidence 9999999999985 999999521 111 2356788999999988776666544
No 475
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=4.7e-19 Score=198.69 Aligned_cols=124 Identities=31% Similarity=0.488 Sum_probs=105.4
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCCh---HHHhcc
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL---KDLRVK 1292 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l---~~LR~~ 1292 (1354)
|+++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+. ..+|++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 578999999953 359999999999999999999999999999999999999999999999999988764 567899
Q ss_pred Cceeccccccccc-chhhhcCC----CCCCC----HHHHHHHHHHcCCchHHhcCCCC
Q 000680 1293 LSIIPQEPTLFRG-SVRTNLDP----LGLYS----DDEIWKALEKCQLKTTISSLPNK 1341 (1354)
Q Consensus 1293 isiVpQdp~LF~G-TIR~NLdp----~~~~s----DeeI~~AL~~a~l~~~I~~Lp~g 1341 (1354)
+++|||+|.+|.+ |+++|+.- ....+ ++++.++++..++.++....|..
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 136 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAE 136 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhh
Confidence 9999999999987 99999952 11123 34577889999998877665543
No 476
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=5.1e-19 Score=203.81 Aligned_cols=118 Identities=32% Similarity=0.534 Sum_probs=101.2
Q ss_pred eEEEEEEEEEeCCCC---CCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCC--hHHH
Q 000680 1215 RIELRQLKIRYRPNA---PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG--LKDL 1289 (1354)
Q Consensus 1215 ~I~f~nVsf~Y~~~~---~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~--l~~L 1289 (1354)
.|+++||+++|++.. .++|+||||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+++.+ ...+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 389999999996432 35999999999999999999999999999999999999999999999999998754 4678
Q ss_pred hccCceecccc--cccccchhhhcCCCC---CCCH----HHHHHHHHHcCCc
Q 000680 1290 RVKLSIIPQEP--TLFRGSVRTNLDPLG---LYSD----DEIWKALEKCQLK 1332 (1354)
Q Consensus 1290 R~~isiVpQdp--~LF~GTIR~NLdp~~---~~sD----eeI~~AL~~a~l~ 1332 (1354)
|+++++|||+| .+|..|+++|+.... ..++ +++.++++.+++.
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~ 133 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD 133 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC
Confidence 99999999998 578999999995211 1233 3578899999996
No 477
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.78 E-value=5.8e-19 Score=195.63 Aligned_cols=124 Identities=23% Similarity=0.380 Sum_probs=104.7
Q ss_pred EEEEEEEEEeCCCC--CCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccC
Q 000680 1216 IELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~--~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~i 1293 (1354)
|+++||+++|.... +++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 78999999996431 159999999999999999999999999999999999999999999999999986 456788999
Q ss_pred ceeccccccccc-chhhhcCCC---CCC----CHHHHHHHHHHcCCchHHhcCCC
Q 000680 1294 SIIPQEPTLFRG-SVRTNLDPL---GLY----SDDEIWKALEKCQLKTTISSLPN 1340 (1354)
Q Consensus 1294 siVpQdp~LF~G-TIR~NLdp~---~~~----sDeeI~~AL~~a~l~~~I~~Lp~ 1340 (1354)
+++||+|.+|.+ |+++|+... ... .++++.++++..++.+.....+.
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 135 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVG 135 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhh
Confidence 999999999986 999998411 111 24567889999999877665443
No 478
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.77 E-value=6.9e-19 Score=195.81 Aligned_cols=117 Identities=26% Similarity=0.381 Sum_probs=103.7
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCc
Q 000680 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1354)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~is 1294 (1354)
.|+++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+++...+|++++
T Consensus 7 ~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 5999999999953 35999999999999999999999999999999999999999999999999999998888999999
Q ss_pred eecccccccccchhhhcCC----CCC-CCHHHHHHHHHHcCCch
Q 000680 1295 IIPQEPTLFRGSVRTNLDP----LGL-YSDDEIWKALEKCQLKT 1333 (1354)
Q Consensus 1295 iVpQdp~LF~GTIR~NLdp----~~~-~sDeeI~~AL~~a~l~~ 1333 (1354)
++||+|.+|+.|+++|+.. .+. ..++++.++++..++.+
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~ 128 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD 128 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh
Confidence 9999999999999999952 111 13456778999999864
No 479
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.77 E-value=5.5e-19 Score=194.80 Aligned_cols=125 Identities=32% Similarity=0.474 Sum_probs=105.7
Q ss_pred EEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCcee
Q 000680 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSII 1296 (1354)
Q Consensus 1217 ~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiV 1296 (1354)
+++|++++|..+..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|++++++
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 47899999964324599999999999999999999999999999999999999999999999999988888899999999
Q ss_pred cccc--cccccchhhhcCCC---CCCC----HHHHHHHHHHcCCchHHhcCCCC
Q 000680 1297 PQEP--TLFRGSVRTNLDPL---GLYS----DDEIWKALEKCQLKTTISSLPNK 1341 (1354)
Q Consensus 1297 pQdp--~LF~GTIR~NLdp~---~~~s----DeeI~~AL~~a~l~~~I~~Lp~g 1341 (1354)
||+| .++..|+++|+... ...+ ++++.++++..++.+.....|..
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 134 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFT 134 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCccc
Confidence 9998 36788999999531 1122 34577889999998877665543
No 480
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.77 E-value=9e-19 Score=189.06 Aligned_cols=135 Identities=30% Similarity=0.439 Sum_probs=109.7
Q ss_pred EEEEEEEEEeCCCC--CCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHH---H-
Q 000680 1216 IELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---L- 1289 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~--~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~---L- 1289 (1354)
++++||+..|..+. -.+|+||||+|++||.|||+||||||||||+++|-++-.|++|.|.++|.|+..++-+. +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67999999996442 35999999999999999999999999999999999999999999999999999998543 3
Q ss_pred hccCceeccccccccc-chhhhcC-C--CCCC----CHHHHHHHHHHcCCchHHh-cCCCCcCCCCccccc
Q 000680 1290 RVKLSIIPQEPTLFRG-SVRTNLD-P--LGLY----SDDEIWKALEKCQLKTTIS-SLPNKLDSSGKLFSA 1351 (1354)
Q Consensus 1290 R~~isiVpQdp~LF~G-TIR~NLd-p--~~~~----sDeeI~~AL~~a~l~~~I~-~Lp~gldt~G~n~s~ 1351 (1354)
|++||+|+|+..|++. |++||+. | +... .++.+.+.++..++.+... ..|..| ++|++=++
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eL-SGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSEL-SGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhc-CHHHHHHH
Confidence 5789999999999977 9999985 2 2211 2456677888889987777 556543 45554443
No 481
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.77 E-value=9.9e-19 Score=198.98 Aligned_cols=121 Identities=31% Similarity=0.440 Sum_probs=103.4
Q ss_pred cceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccC-----CCCCEEEEcCeeCCC--CC
Q 000680 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICS--MG 1285 (1354)
Q Consensus 1213 ~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e-----~~~G~I~IDGvDI~~--i~ 1285 (1354)
.+.|+++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 11 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 578999999999963 359999999999999999999999999999999999986 589999999999964 45
Q ss_pred hHHHhccCceecccccccccchhhhcCCC----CCCC----HHHHHHHHHHcCCchHH
Q 000680 1286 LKDLRVKLSIIPQEPTLFRGSVRTNLDPL----GLYS----DDEIWKALEKCQLKTTI 1335 (1354)
Q Consensus 1286 l~~LR~~isiVpQdp~LF~GTIR~NLdp~----~~~s----DeeI~~AL~~a~l~~~I 1335 (1354)
...+|++++++||+|.+|..|+++|+... ...+ +++++++++.+++.+.+
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 146 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV 146 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Confidence 67889999999999999999999999621 1122 35688899999986443
No 482
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=9.6e-19 Score=200.72 Aligned_cols=126 Identities=25% Similarity=0.421 Sum_probs=109.1
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCce
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1354)
++++||+++|..+. ++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+...+|+++++
T Consensus 4 l~~~~l~~~~~~~~-~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 4 IETRDLCYSYSGSK-EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred EEEEEEEEEeCCCC-ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 78999999995433 49999999999999999999999999999999999999999999999999998888889999999
Q ss_pred ecccc--cccccchhhhcCCCC---CCC----HHHHHHHHHHcCCchHHhcCCCCc
Q 000680 1296 IPQEP--TLFRGSVRTNLDPLG---LYS----DDEIWKALEKCQLKTTISSLPNKL 1342 (1354)
Q Consensus 1296 VpQdp--~LF~GTIR~NLdp~~---~~s----DeeI~~AL~~a~l~~~I~~Lp~gl 1342 (1354)
+||+| .+|..|+++|+.... ..+ ++.+.++++.+++.+.....|..|
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 138 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHL 138 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccC
Confidence 99998 478889999995211 123 345789999999998887777544
No 483
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=1.2e-18 Score=200.26 Aligned_cols=129 Identities=22% Similarity=0.382 Sum_probs=110.6
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCC---CEEEEcCeeCCCCChHHHh
Q 000680 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAG---GSILIDGVDICSMGLKDLR 1290 (1354)
Q Consensus 1214 G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~---G~I~IDGvDI~~i~l~~LR 1290 (1354)
+.|+++|++++|++...++|+||||+|++||.+||+|++|||||||+++|.|+++|++ |+|.+||.++.+.+...+|
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 4699999999996433359999999999999999999999999999999999999988 8999999999988888899
Q ss_pred ccCceecccc--cccccchhhhcCCC---CCCCH----HHHHHHHHHcCCchHHhcCCCCc
Q 000680 1291 VKLSIIPQEP--TLFRGSVRTNLDPL---GLYSD----DEIWKALEKCQLKTTISSLPNKL 1342 (1354)
Q Consensus 1291 ~~isiVpQdp--~LF~GTIR~NLdp~---~~~sD----eeI~~AL~~a~l~~~I~~Lp~gl 1342 (1354)
++++++||+| .+++.|+++||... ...++ +++.++++.+++.++....|..|
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~L 144 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANL 144 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccC
Confidence 9999999999 46688999999621 12333 44788999999998887777544
No 484
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=6e-19 Score=203.26 Aligned_cols=125 Identities=22% Similarity=0.421 Sum_probs=102.8
Q ss_pred eEEEEEEEEEeCCCC---CCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCC----ChH
Q 000680 1215 RIELRQLKIRYRPNA---PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM----GLK 1287 (1354)
Q Consensus 1215 ~I~f~nVsf~Y~~~~---~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i----~l~ 1287 (1354)
.|+++||+++|+++. .++|+||||+|++||++||+|++|||||||+++|.|+++|++|+|.+||+++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 489999999996432 3599999999999999999999999999999999999999999999999999764 356
Q ss_pred HHhccCceecccc--cccccchhhhcCCC--C-CCC----HHHHHHHHHHcCCc-hHHhcCC
Q 000680 1288 DLRVKLSIIPQEP--TLFRGSVRTNLDPL--G-LYS----DDEIWKALEKCQLK-TTISSLP 1339 (1354)
Q Consensus 1288 ~LR~~isiVpQdp--~LF~GTIR~NLdp~--~-~~s----DeeI~~AL~~a~l~-~~I~~Lp 1339 (1354)
.+|++|++|||+| .+|.+|+++||... . ..+ ++.+.++++.+++. +.....|
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 143 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSP 143 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCc
Confidence 7899999999998 58989999999521 1 123 34566788888886 4443333
No 485
>PRK10908 cell division protein FtsE; Provisional
Probab=99.77 E-value=1.4e-18 Score=193.04 Aligned_cols=125 Identities=25% Similarity=0.395 Sum_probs=104.6
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHH---Hhcc
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---LRVK 1292 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~---LR~~ 1292 (1354)
|+++|++++|+++ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+.+++.+. +|++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999533 35999999999999999999999999999999999999999999999999998876544 6889
Q ss_pred Cceeccccccc-ccchhhhcCCC---CCCCH----HHHHHHHHHcCCchHHhcCCCC
Q 000680 1293 LSIIPQEPTLF-RGSVRTNLDPL---GLYSD----DEIWKALEKCQLKTTISSLPNK 1341 (1354)
Q Consensus 1293 isiVpQdp~LF-~GTIR~NLdp~---~~~sD----eeI~~AL~~a~l~~~I~~Lp~g 1341 (1354)
++++||+|.+| ..|+++|+... ...++ +++.++++..++.+...+.|..
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 137 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQ 137 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchh
Confidence 99999999875 66999999521 11232 3467889999998876665543
No 486
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.3e-18 Score=198.72 Aligned_cols=120 Identities=24% Similarity=0.442 Sum_probs=102.6
Q ss_pred cceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccC-----CCCCEEEEcCeeCCC--CC
Q 000680 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICS--MG 1285 (1354)
Q Consensus 1213 ~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e-----~~~G~I~IDGvDI~~--i~ 1285 (1354)
...|+++||+++|+. ..+|+|+||+|++||++||+|++|||||||+++|.|+++ |++|+|.+||.|+.. .+
T Consensus 11 ~~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 11 NIIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred CceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 457999999999964 349999999999999999999999999999999999988 689999999999863 56
Q ss_pred hHHHhccCceecccccccccchhhhcCCCC---CC---CHHHHHHHHHHcCCchH
Q 000680 1286 LKDLRVKLSIIPQEPTLFRGSVRTNLDPLG---LY---SDDEIWKALEKCQLKTT 1334 (1354)
Q Consensus 1286 l~~LR~~isiVpQdp~LF~GTIR~NLdp~~---~~---sDeeI~~AL~~a~l~~~ 1334 (1354)
..++|++++++||+|.+|.+|+++|+.... .+ .++++.++++.+++.+.
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 143 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDE 143 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcch
Confidence 778899999999999999999999996321 11 24567888999887543
No 487
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=9.5e-19 Score=197.05 Aligned_cols=124 Identities=33% Similarity=0.477 Sum_probs=104.5
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCC---hHHHhcc
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG---LKDLRVK 1292 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~---l~~LR~~ 1292 (1354)
++++|++++|..+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+ ...+|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4789999999642 35999999999999999999999999999999999999999999999999999887 5678899
Q ss_pred Cceecccccccc-cchhhhcCC-C-----------C---CCCHHHHHHHHHHcCCchHHhcCCC
Q 000680 1293 LSIIPQEPTLFR-GSVRTNLDP-L-----------G---LYSDDEIWKALEKCQLKTTISSLPN 1340 (1354)
Q Consensus 1293 isiVpQdp~LF~-GTIR~NLdp-~-----------~---~~sDeeI~~AL~~a~l~~~I~~Lp~ 1340 (1354)
++++||++.+|. .|+++|+.. . + ...++++.++++..++.+.....|.
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 143 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRAD 143 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcc
Confidence 999999999887 699999942 1 1 1124567888999999776655443
No 488
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.77 E-value=1.1e-18 Score=186.00 Aligned_cols=96 Identities=30% Similarity=0.644 Sum_probs=90.6
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCce
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1354)
|+++|++++|+.+..++++|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+++.+.+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 57999999996543459999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccccchhhhc
Q 000680 1296 IPQEPTLFRGSVRTNL 1311 (1354)
Q Consensus 1296 VpQdp~LF~GTIR~NL 1311 (1354)
+||+|.+|++|+++|+
T Consensus 81 ~~q~~~~~~~tv~~~l 96 (173)
T cd03246 81 LPQDDELFSGSIAENI 96 (173)
T ss_pred ECCCCccccCcHHHHC
Confidence 9999999999999996
No 489
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.77 E-value=7.3e-19 Score=193.36 Aligned_cols=121 Identities=23% Similarity=0.352 Sum_probs=104.7
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCce
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1354)
|+++|++++|. + .++|+|+||++++||.+||+|++|||||||+++|.|+.+|++|+|.+||.++.+. ..+|+++++
T Consensus 1 l~~~~l~~~~~-~-~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYG-K-KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEEC-C-eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 57999999995 3 3599999999999999999999999999999999999999999999999999865 667889999
Q ss_pred eccccccc-ccchhhhcCCC---CCCCHHHHHHHHHHcCCchHHhcCCC
Q 000680 1296 IPQEPTLF-RGSVRTNLDPL---GLYSDDEIWKALEKCQLKTTISSLPN 1340 (1354)
Q Consensus 1296 VpQdp~LF-~GTIR~NLdp~---~~~sDeeI~~AL~~a~l~~~I~~Lp~ 1340 (1354)
+||++.+| +.|+++|+... ...+++++.++++..++.+.....|.
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 125 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVK 125 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHh
Confidence 99999888 46999999532 12357788999999999887765444
No 490
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=9.3e-19 Score=201.77 Aligned_cols=125 Identities=26% Similarity=0.398 Sum_probs=103.7
Q ss_pred EEEEEEEEEeCCCC---CCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCC----CChHH
Q 000680 1216 IELRQLKIRYRPNA---PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICS----MGLKD 1288 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~---~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~----i~l~~ 1288 (1354)
|+++||+++|+++. +++|+||||+|++||++||+|++|||||||+++|.|+++|++|+|++||.+++. .....
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999996433 259999999999999999999999999999999999999999999999999963 34677
Q ss_pred HhccCceecccc--cccccchhhhcCCC--C-CCC----HHHHHHHHHHcCCc-hHHhcCCC
Q 000680 1289 LRVKLSIIPQEP--TLFRGSVRTNLDPL--G-LYS----DDEIWKALEKCQLK-TTISSLPN 1340 (1354)
Q Consensus 1289 LR~~isiVpQdp--~LF~GTIR~NLdp~--~-~~s----DeeI~~AL~~a~l~-~~I~~Lp~ 1340 (1354)
+|+++++|+|+| .+|.+|+.+|+... . ..+ ++++.++++.+++. ++....|.
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 143 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPF 143 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcc
Confidence 899999999998 79999999999521 1 122 33577889999995 45544443
No 491
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.77 E-value=4.6e-19 Score=176.40 Aligned_cols=126 Identities=25% Similarity=0.418 Sum_probs=107.9
Q ss_pred EEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccccc
Q 000680 1223 IRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTL 1302 (1354)
Q Consensus 1223 f~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~L 1302 (1354)
.+|.....++|+++||++.+||.++|.||||||||||++.+.-+..|++|.++.-|.|+++++.+.+|++++|+-|.|.|
T Consensus 9 ~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paL 88 (223)
T COG4619 9 VGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPAL 88 (223)
T ss_pred HHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccc
Confidence 35765566799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhcC-CCC----CCCHHHHHHHHHHcCCchHHhcCCCCcCCCCcc
Q 000680 1303 FRGSVRTNLD-PLG----LYSDDEIWKALEKCQLKTTISSLPNKLDSSGKL 1348 (1354)
Q Consensus 1303 F~GTIR~NLd-p~~----~~sDeeI~~AL~~a~l~~~I~~Lp~gldt~G~n 1348 (1354)
|.|||.+|+- |+. ..+.+.-.+-|+++++.+.+-+.+--=-++|+.
T Consensus 89 fg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~ 139 (223)
T COG4619 89 FGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEK 139 (223)
T ss_pred cccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHH
Confidence 9999999984 542 234556677889999988876555433445553
No 492
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.76 E-value=1.2e-18 Score=196.41 Aligned_cols=124 Identities=31% Similarity=0.466 Sum_probs=103.9
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCCh---HHHhcc
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL---KDLRVK 1292 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l---~~LR~~ 1292 (1354)
|+++||+++|..+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+++. ..+|++
T Consensus 2 l~~~~l~~~~~~~-~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCCC-cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 7899999999633 459999999999999999999999999999999999999999999999999987764 457899
Q ss_pred Cceecccccccc-cchhhhcCC-C-----------CC---CCHHHHHHHHHHcCCchHHhcCCC
Q 000680 1293 LSIIPQEPTLFR-GSVRTNLDP-L-----------GL---YSDDEIWKALEKCQLKTTISSLPN 1340 (1354)
Q Consensus 1293 isiVpQdp~LF~-GTIR~NLdp-~-----------~~---~sDeeI~~AL~~a~l~~~I~~Lp~ 1340 (1354)
++++||+|.+|. .|+++|+.. . +. ..++++.++++..++.+.....+.
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 144 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRAD 144 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcc
Confidence 999999999886 599999952 1 01 123467888999999876655443
No 493
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=8.8e-19 Score=196.24 Aligned_cols=127 Identities=28% Similarity=0.465 Sum_probs=106.6
Q ss_pred EEEEEEEEEeCCCC--CCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChH---HHh
Q 000680 1216 IELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK---DLR 1290 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~--~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~---~LR 1290 (1354)
|+++|++++|+... .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+.. ..|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996431 2599999999999999999999999999999999999999999999999999887654 358
Q ss_pred ccCceecccccccc-cchhhhcCCC---CCC----CHHHHHHHHHHcCCchHHhcCCCCc
Q 000680 1291 VKLSIIPQEPTLFR-GSVRTNLDPL---GLY----SDDEIWKALEKCQLKTTISSLPNKL 1342 (1354)
Q Consensus 1291 ~~isiVpQdp~LF~-GTIR~NLdp~---~~~----sDeeI~~AL~~a~l~~~I~~Lp~gl 1342 (1354)
++++++||+|.+|. .|+++|+... ... .++++.++++..++.+.....|..|
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 141 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQL 141 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhC
Confidence 89999999999997 5999998521 111 2457889999999988776655443
No 494
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.76 E-value=1.6e-18 Score=193.55 Aligned_cols=128 Identities=23% Similarity=0.339 Sum_probs=108.3
Q ss_pred eEEEEEEEEEeCCCC--CCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHH---H
Q 000680 1215 RIELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---L 1289 (1354)
Q Consensus 1215 ~I~f~nVsf~Y~~~~--~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~---L 1289 (1354)
.|+++|++++|+++. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 599999999996532 24999999999999999999999999999999999999999999999999999887654 3
Q ss_pred -hccCceeccccccccc-chhhhcCC---CCCC----CHHHHHHHHHHcCCchHHhcCCCCc
Q 000680 1290 -RVKLSIIPQEPTLFRG-SVRTNLDP---LGLY----SDDEIWKALEKCQLKTTISSLPNKL 1342 (1354)
Q Consensus 1290 -R~~isiVpQdp~LF~G-TIR~NLdp---~~~~----sDeeI~~AL~~a~l~~~I~~Lp~gl 1342 (1354)
+++++++||+|.+|.+ |+++|+.. +... .++++.++++..++.+.....|..|
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 147 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQL 147 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhC
Confidence 3689999999999986 99999852 1111 2456888999999998887777654
No 495
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.3e-18 Score=200.04 Aligned_cols=124 Identities=27% Similarity=0.436 Sum_probs=104.2
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCC--CCChHHHhcc
Q 000680 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDIC--SMGLKDLRVK 1292 (1354)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~--~i~l~~LR~~ 1292 (1354)
-|+++||+++|+++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+. ..+...+|++
T Consensus 5 ~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 49999999999633 35999999999999999999999999999999999999999999999999984 3456788999
Q ss_pred Cceecccc--cccccchhhhcCCC---CCCC----HHHHHHHHHHcCCchHHhcCC
Q 000680 1293 LSIIPQEP--TLFRGSVRTNLDPL---GLYS----DDEIWKALEKCQLKTTISSLP 1339 (1354)
Q Consensus 1293 isiVpQdp--~LF~GTIR~NLdp~---~~~s----DeeI~~AL~~a~l~~~I~~Lp 1339 (1354)
++++||+| .+|+.|+++|+... ...+ ++.+.++++..++.++....+
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~ 139 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPT 139 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCc
Confidence 99999998 57899999999521 1123 245678889999987654433
No 496
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.76 E-value=1.7e-18 Score=192.27 Aligned_cols=125 Identities=30% Similarity=0.479 Sum_probs=104.4
Q ss_pred EEEEEEEEEeCCCC--CCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHH---h
Q 000680 1216 IELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL---R 1290 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~--~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~L---R 1290 (1354)
|+++||+++|.+.. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+.+++..+. |
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996421 359999999999999999999999999999999999999999999999999998876553 4
Q ss_pred -ccCceecccccccc-cchhhhcCC---CCCCC----HHHHHHHHHHcCCchHHhcCCC
Q 000680 1291 -VKLSIIPQEPTLFR-GSVRTNLDP---LGLYS----DDEIWKALEKCQLKTTISSLPN 1340 (1354)
Q Consensus 1291 -~~isiVpQdp~LF~-GTIR~NLdp---~~~~s----DeeI~~AL~~a~l~~~I~~Lp~ 1340 (1354)
++++++||+|.+|. .|+++|+.. ....+ ++++.++++..++.+.....|.
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 140 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPS 140 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChh
Confidence 68999999999996 599999952 11122 3457889999999877665554
No 497
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=1e-18 Score=192.99 Aligned_cols=123 Identities=28% Similarity=0.406 Sum_probs=103.4
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCce
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1354)
++++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+++.+ ..|+++++
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEEE
Confidence 478999999953 35999999999999999999999999999999999999999999999999998754 35788999
Q ss_pred ecccccccc-cchhhhcCCC---CCC----CHHHHHHHHHHcCCchHHhcCCCCc
Q 000680 1296 IPQEPTLFR-GSVRTNLDPL---GLY----SDDEIWKALEKCQLKTTISSLPNKL 1342 (1354)
Q Consensus 1296 VpQdp~LF~-GTIR~NLdp~---~~~----sDeeI~~AL~~a~l~~~I~~Lp~gl 1342 (1354)
+||+|.+|. .|+++|+... ... .++++.++++..++.++....|..|
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 131 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHEL 131 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhC
Confidence 999999986 5999999521 111 2346788999999988776665443
No 498
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.4e-18 Score=198.18 Aligned_cols=126 Identities=28% Similarity=0.389 Sum_probs=109.4
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCc
Q 000680 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1354)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~is 1294 (1354)
.++++|++++|+. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+.+.+...+|+.++
T Consensus 11 ~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 5999999999953 35999999999999999999999999999999999999999999999999999988889999999
Q ss_pred eeccccccccc-chhhhcCCC-C----------CCCHHHHHHHHHHcCCchHHhcCCCCc
Q 000680 1295 IIPQEPTLFRG-SVRTNLDPL-G----------LYSDDEIWKALEKCQLKTTISSLPNKL 1342 (1354)
Q Consensus 1295 iVpQdp~LF~G-TIR~NLdp~-~----------~~sDeeI~~AL~~a~l~~~I~~Lp~gl 1342 (1354)
++||++.+|.+ |+++|+... . ...++++.++++.+++.++....|..|
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 148 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSL 148 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccC
Confidence 99999887765 999999521 0 112456889999999988777766543
No 499
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.9e-18 Score=198.18 Aligned_cols=127 Identities=22% Similarity=0.349 Sum_probs=108.4
Q ss_pred eEEEEEEEEEeCCC-CCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccC
Q 000680 1215 RIELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1354)
Q Consensus 1215 ~I~f~nVsf~Y~~~-~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~i 1293 (1354)
-|+++||+++|... ..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999642 23599999999999999999999999999999999999999999999999999988888899999
Q ss_pred ceecccc--cccccchhhhcCCC-C--CCCHH----HHHHHHHHcCCchHHhcCCCC
Q 000680 1294 SIIPQEP--TLFRGSVRTNLDPL-G--LYSDD----EIWKALEKCQLKTTISSLPNK 1341 (1354)
Q Consensus 1294 siVpQdp--~LF~GTIR~NLdp~-~--~~sDe----eI~~AL~~a~l~~~I~~Lp~g 1341 (1354)
+++||+| .++..|+.+||... . ..+++ ++.++++.+++.++....|..
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 140 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPAR 140 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCccc
Confidence 9999998 46788999999621 1 23333 457889999998887665544
No 500
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.76 E-value=1.7e-18 Score=185.43 Aligned_cols=95 Identities=32% Similarity=0.612 Sum_probs=88.4
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCce
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1354)
|+++|++++|+...+++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++... ...+|+++++
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 579999999965434699999999999999999999999999999999999999999999999999877 6778999999
Q ss_pred ecccccccccchhhhc
Q 000680 1296 IPQEPTLFRGSVRTNL 1311 (1354)
Q Consensus 1296 VpQdp~LF~GTIR~NL 1311 (1354)
+||+|.+|++|+++|+
T Consensus 80 ~~q~~~~~~~tv~~~i 95 (178)
T cd03247 80 LNQRPYLFDTTLRNNL 95 (178)
T ss_pred EccCCeeecccHHHhh
Confidence 9999999999999997
Done!