BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000681
(1354 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/314 (22%), Positives = 127/314 (40%), Gaps = 78/314 (24%)
Query: 1048 LLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS 1107
+ P ++V+A E+ IK+W+YE + H + IS D S L+AS
Sbjct: 115 IFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDIS-------FDHSGKLLAS 167
Query: 1108 CNGN--IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVD---------------WQ 1150
C+ + I++W D Q ++ GH V +++ + W+
Sbjct: 168 CSADMTIKLW------DFQGF-ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220
Query: 1151 QQSGY-----------------------LYASGEVSSIMLW---------DLEKEQQMVN 1178
Q+GY + + ++ +W +L + + +V
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 280
Query: 1179 PI---PSSSDCSISALTASQVH-----GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQ 1230
I P SS SIS T S+ G L +G D +++++DV T M + + H
Sbjct: 281 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGHDN 339
Query: 1231 QVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP 1290
V G+ F G I+S + ++ D +N K T++AH +++L H+ AP
Sbjct: 340 WVR---GVLFHSG--GKFILSCADDKTLRVWDYKN-KRCMKTLNAHEHFVTSLDFHKTAP 393
Query: 1291 IIASGSAKQLIKVF 1304
+ +GS Q +KV+
Sbjct: 394 YVVTGSVDQTVKVW 407
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/259 (19%), Positives = 105/259 (40%), Gaps = 25/259 (9%)
Query: 1049 LQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC 1108
P P V+ + R+++WNYE + S + P + + N ++V S
Sbjct: 21 FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN-----WIIVGSD 75
Query: 1109 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLW 1168
+ IR+ ++ +K+V + H +R V Y+ + + ++ LW
Sbjct: 76 DFRIRV---FNYNTGEKVV----DFEAHPDYIRSIAV----HPTKPYVLSGSDDLTVKLW 124
Query: 1169 DLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDV--RTPDMLVCSTR 1226
+ E + + + + + A+G +D +V+++ + TP+ +
Sbjct: 125 NWENNWALEQTF-EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT--- 180
Query: 1227 PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVH 1286
T Q V + + P D +++AS I+ D + K T++ H ++S H
Sbjct: 181 --TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT-KSCVATLEGHMSNVSFAVFH 237
Query: 1287 RHAPIIASGSAKQLIKVFS 1305
PII SGS +K+++
Sbjct: 238 PTLPIIISGSEDGTLKIWN 256
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/259 (19%), Positives = 105/259 (40%), Gaps = 25/259 (9%)
Query: 1049 LQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC 1108
P P V+ + R+++WNYE + S + P + + N ++V S
Sbjct: 21 FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN-----WIIVGSD 75
Query: 1109 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLW 1168
+ IR+ ++ +K+V + H +R V Y+ + + ++ LW
Sbjct: 76 DFRIRV---FNYNTGEKVV----DFEAHPDYIRSIAV----HPTKPYVLSGSDDLTVKLW 124
Query: 1169 DLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDV--RTPDMLVCSTR 1226
+ E + + + + + A+G +D +V+++ + TP+ +
Sbjct: 125 NWENNWALEQTF-EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT--- 180
Query: 1227 PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVH 1286
T Q V + + P D +++AS I+ D + K T++ H ++S H
Sbjct: 181 --TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT-KSCVATLEGHMSNVSFAVFH 237
Query: 1287 RHAPIIASGSAKQLIKVFS 1305
PII SGS +K+++
Sbjct: 238 PTLPIIISGSEDGTLKIWN 256
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s
Complex Obtained By Docking Homology Models Of The Rna
And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 19/190 (10%)
Query: 1164 SIMLWDLEKEQQMVNPIPSSSDCSISALTASQV--HGGQLA-AGFVDGSVRLYDVRTPDM 1220
+I++W L +++ IP + S + V GQ A +G DG++RL+D+ T
Sbjct: 39 TIIMWKLTRDETNYG-IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG-- 95
Query: 1221 LVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSL 1280
+TR + V+ ++F D +IVS S+ I+ + + ++H +
Sbjct: 96 --TTTRRFVGHTKDVLSVAFSS--DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWV 151
Query: 1281 SALAV--HRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ 1338
S + + PII S +L+KV++L +L T H ++ N +T P
Sbjct: 152 SCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYL-------NTVTVSPDG 204
Query: 1339 VLLAAGSADA 1348
L A+G D
Sbjct: 205 SLCASGGKDG 214
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution
Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A Resolution
Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A Resolution
Of 2.45 Angstrom
Length = 340
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 19/190 (10%)
Query: 1164 SIMLWDLEKEQQMVNPIPSSSDCSISALTASQV--HGGQLA-AGFVDGSVRLYDVRTPDM 1220
+I++W L +++ IP + S + V GQ A +G DG++RL+D+ T
Sbjct: 62 TIIMWKLTRDETNYG-IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG-- 118
Query: 1221 LVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSL 1280
+TR + V+ ++F D +IVS S+ I+ + + ++H +
Sbjct: 119 --TTTRRFVGHTKDVLSVAFSS--DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWV 174
Query: 1281 SALAV--HRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ 1338
S + + PII S +L+KV++L +L T H ++ N +T P
Sbjct: 175 SCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYL-------NTVTVSPDG 227
Query: 1339 VLLAAGSADA 1348
L A+G D
Sbjct: 228 SLCASGGKDG 237
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/259 (19%), Positives = 105/259 (40%), Gaps = 25/259 (9%)
Query: 1049 LQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC 1108
P P V+ + R+++WNYE + S + P + + N ++V S
Sbjct: 21 FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN-----WIIVGSD 75
Query: 1109 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLW 1168
+ IR+ ++ +K+V + H +R V Y+ + + ++ LW
Sbjct: 76 DFRIRV---FNYNTGEKVV----DFEAHPDYIRSIAV----HPTKPYVLSGSDDLTVKLW 124
Query: 1169 DLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDV--RTPDMLVCSTR 1226
+ E + + + + + A+G +D +V+++ + TP+ +
Sbjct: 125 NWENNWALEQTF-EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT--- 180
Query: 1227 PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVH 1286
T Q V + + P D +++AS I+ D + K T++ H ++S H
Sbjct: 181 --TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT-KSCVATLEGHMSNVSFAVFH 237
Query: 1287 RHAPIIASGSAKQLIKVFS 1305
PII SGS +K+++
Sbjct: 238 PTLPIIISGSEDGTLKIWN 256
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From
Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes From
Xenopus Laevis
Length = 357
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 70/163 (42%), Gaps = 18/163 (11%)
Query: 1110 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVD--WQQQSGYLYASGEVSSIML 1167
G+I ++KD + + L TA GV+ V D W + G L AS + ++ L
Sbjct: 70 GSIWVFKDPEGAPNESLCTA---------GVQTEAGVTDVAWVSEKGILVAS-DSGAVEL 119
Query: 1168 WD-LEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTR 1226
W+ LEKE +VN I + G Q +G D SV+++D+ +L S
Sbjct: 120 WEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLK-SYN 178
Query: 1227 PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDA 1269
H+ +V V PG D +S + G I D R K A
Sbjct: 179 AHSSEVNCVAAC---PGKDTI-FLSCGEDGRILLWDTRKPKPA 217
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 74/180 (41%), Gaps = 17/180 (9%)
Query: 1055 IVVAADENERIKIWNY--EEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNI 1112
I+VA+D +++W +E L+N F ++ D + L + + D + + + ++
Sbjct: 108 ILVASDSGA-VELWEILEKESLLVNKFAKYEHDDI-VKTLSVFS--DGTQAVSGGKDFSV 163
Query: 1113 RIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEK 1172
++W D QK S H V C V + + GE I+LWD K
Sbjct: 164 KVW-DLSQK------AVLKSYNAHSSEVNC---VAACPGKDTIFLSCGEDGRILLWDTRK 213
Query: 1173 EQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV 1232
+ +SD +++T A G G+V L +++ PD S H+Q +
Sbjct: 214 PKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA-VHSQNI 272
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of
The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of
The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of
The Copi Vesicular Coat
Length = 814
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 52/259 (20%), Positives = 104/259 (40%), Gaps = 25/259 (9%)
Query: 1049 LQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC 1108
P P V+ + R++IWNYE + S + P + + N ++V S
Sbjct: 21 FHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKN-----WIIVGSD 75
Query: 1109 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLW 1168
+ IR+ ++ +K+V + H +R V Y+ + + ++ LW
Sbjct: 76 DFRIRV---FNYNTGEKVV----DFEAHPDYIRSIAV----HPTKPYVLSGSDDLTVKLW 124
Query: 1169 DLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDV--RTPDMLVCSTR 1226
+ E + + + + A+G +D +V+++ + TP+ +
Sbjct: 125 NWENNWALEQTFEGHEHF-VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT--- 180
Query: 1227 PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVH 1286
T Q V + + P D +++AS I+ D + K T++ H ++S H
Sbjct: 181 --TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT-KSCVATLEGHMSNVSFAVFH 237
Query: 1287 RHAPIIASGSAKQLIKVFS 1305
PII SGS +K+++
Sbjct: 238 PTLPIIISGSEDGTLKIWN 256
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A
5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/224 (20%), Positives = 88/224 (39%), Gaps = 30/224 (13%)
Query: 1051 PFSPIVVAADENERIKIWNYEEDTLLNSFDNH-------DFPDKGISKLCLVNELDVSLL 1103
P +V+A ++ R+ +WN ++ H F G S C + S+
Sbjct: 76 PEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIF 135
Query: 1104 LVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVS 1163
++S Q D+ + + GHK V D Q++ + SG+ +
Sbjct: 136 NLSS------------QADRDGNMPVSRVLTGHKGYASSCQYVPD--QETRLITGSGDQT 181
Query: 1164 SIMLWDLEKEQQMV---NPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDM 1220
+ LWD+ Q++ + PS + +L+ + ++ +G D +VRL+D+R
Sbjct: 182 CV-LWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR 240
Query: 1221 LVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIR 1264
V + H + V F P D + + S G + D+R
Sbjct: 241 AVRTYHGHEGDINSV---KFFP--DGQRFGTGSDDGTCRLFDMR 279
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 6/118 (5%)
Query: 1198 GGQLAAGFVDGSVRLYDVRTPDML-VCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG 1256
G + G DG+ RL+D+RT L V + P E + S + + + G
Sbjct: 261 GQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNG 320
Query: 1257 DIQFLDIRNHKDAYLTI----DAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQ 1310
D D + L + ++H G +S L + + +GS + +K+++ G +
Sbjct: 321 DCYVWDTL-LAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 13/124 (10%)
Query: 1237 GISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA------HRGSLSALAVHR-HA 1289
G+S+ P L+ ++SAS I DI + IDA H + +A H H
Sbjct: 186 GLSWNPNLN-GYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHE 244
Query: 1290 PIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY-QVLLAAGSADA 1348
+ S + Q + ++ + + A+ VNCL+F+PY + +LA GSAD
Sbjct: 245 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE----VNCLSFNPYSEFILATGSADK 300
Query: 1349 CVSI 1352
V++
Sbjct: 301 TVAL 304
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 13/124 (10%)
Query: 1237 GISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA------HRGSLSALAVHR-HA 1289
G+S+ P L+ ++SAS I DI + IDA H + +A H H
Sbjct: 188 GLSWNPNLN-GYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHE 246
Query: 1290 PIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY-QVLLAAGSADA 1348
+ S + Q + ++ + + A+ VNCL+F+PY + +LA GSAD
Sbjct: 247 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE----VNCLSFNPYSEFILATGSADK 302
Query: 1349 CVSI 1352
V++
Sbjct: 303 TVAL 306
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 13/124 (10%)
Query: 1237 GISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA------HRGSLSALAVHR-HA 1289
G+S+ P L+ ++SAS I DI + IDA H + +A H H
Sbjct: 190 GLSWNPNLN-GYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHE 248
Query: 1290 PIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY-QVLLAAGSADA 1348
+ S + Q + ++ + + A+ VNCL+F+PY + +LA GSAD
Sbjct: 249 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE----VNCLSFNPYSEFILATGSADK 304
Query: 1349 CVSI 1352
V++
Sbjct: 305 TVAL 308
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron
Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite Degron
Recognition By ApcC
Length = 431
Score = 37.7 bits (86), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 1133 IQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1192
+Q +PG S+V W ++ YL + + LWD+++++++ N +S + +L+
Sbjct: 152 LQMEQPGEYISSVA--WIKEGNYLAVGTSSAEVQLWDVQQQKRLRN--MTSHSARVGSLS 207
Query: 1193 ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQP 1242
+ L++G G + +DVR + V + H+Q+ V G+ + P
Sbjct: 208 WNSY---ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE---VCGLRWAP 251
Score = 37.0 bits (84), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 87/215 (40%), Gaps = 27/215 (12%)
Query: 1146 VVDWQQQSGYLYASGEVSSIMLW-----DLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1200
+VDW SG + A +S+ LW D+ + QM P S S++ + G
Sbjct: 121 LVDWS--SGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYIS--SVAWIK----EGNY 172
Query: 1201 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQF 1260
LA G V+L+DV+ L R T RV +S+ + + S S++G I
Sbjct: 173 LAVGTSSAEVQLWDVQQQKRL----RNMTSHSARVGSLSWNSYI----LSSGSRSGHIHH 224
Query: 1261 LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPS 1320
D+R + T+ H + L +ASG L+ V+ + G +
Sbjct: 225 HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ--- 281
Query: 1321 FMAQKIGSVNCLTFHPYQ---VLLAAGSADACVSI 1352
Q G+V + + P+Q + G++D + I
Sbjct: 282 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI 316
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 37.7 bits (86), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 1133 IQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1192
+Q +PG S+V W ++ YL + + LWD+++++++ N +S + +L+
Sbjct: 141 LQMEQPGEYISSVA--WIKEGNYLAVGTSSAEVQLWDVQQQKRLRN--MTSHSARVGSLS 196
Query: 1193 ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQP 1242
+ L++G G + +DVR + V + H+Q+ V G+ + P
Sbjct: 197 WNSY---ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE---VCGLRWAP 240
Score = 37.0 bits (84), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 84/215 (39%), Gaps = 27/215 (12%)
Query: 1146 VVDWQQQSGYLYASGEVSSIMLW-----DLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1200
+VDW SG + A +S+ LW D+ + QM P S A G
Sbjct: 110 LVDWS--SGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISS------VAWIKEGNY 161
Query: 1201 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQF 1260
LA G V+L+DV+ L R T RV +S+ + + S S++G I
Sbjct: 162 LAVGTSSAEVQLWDVQQQKRL----RNMTSHSARVGSLSWNSYI----LSSGSRSGHIHH 213
Query: 1261 LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPS 1320
D+R + T+ H + L +ASG L+ V+ + G +
Sbjct: 214 HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ--- 270
Query: 1321 FMAQKIGSVNCLTFHPYQ---VLLAAGSADACVSI 1352
Q G+V + + P+Q + G++D + I
Sbjct: 271 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI 305
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 37.4 bits (85), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 1133 IQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1192
+Q +PG S+V W ++ YL + + LWD+++++++ N +S + +L+
Sbjct: 61 LQMEQPGEYISSVA--WIKEGNYLAVGTSSAEVQLWDVQQQKRLRN--MTSHSARVGSLS 116
Query: 1193 ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQP 1242
+ L++G G + +DVR + V + H+Q+ V G+ + P
Sbjct: 117 WNSY---ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE---VCGLRWAP 160
Score = 37.0 bits (84), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 81/207 (39%), Gaps = 25/207 (12%)
Query: 1146 VVDWQQQSGYLYASGEVSSIMLW-----DLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1200
+VDW SG + A +S+ LW D+ + QM P S A G
Sbjct: 30 LVDWS--SGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISS------VAWIKEGNY 81
Query: 1201 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQF 1260
LA G V+L+DV+ L R T RV +S+ + + S S++G I
Sbjct: 82 LAVGTSSAEVQLWDVQQQKRL----RNMTSHSARVGSLSWNSYI----LSSGSRSGHIHH 133
Query: 1261 LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPS 1320
D+R + T+ H + L +ASG L+ V+ + G +
Sbjct: 134 HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ--- 190
Query: 1321 FMAQKIGSVNCLTFHPYQV-LLAAGSA 1346
Q G+V + + P+Q +LA G
Sbjct: 191 TFTQHQGAVKAVAWCPWQSNVLATGGG 217
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 1245 DPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVF 1304
D A +SAS ++ D+ + Y H+ + ++ + + A +I SGS + IKV+
Sbjct: 70 DGAYALSASWDKTLRLWDVAT-GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 128
Query: 1305 SLEGEQLGTIRYHH 1318
+++G+ L T+ H+
Sbjct: 129 TIKGQCLATLLGHN 142
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 1245 DPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVF 1304
D A +SAS ++ D+ + Y H+ + ++ + + A +I SGS + IKV+
Sbjct: 76 DGAYALSASWDKTLRLWDVAT-GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 1305 SLEGEQLGTIRYHH 1318
+++G+ L T+ H+
Sbjct: 135 TIKGQCLATLLGHN 148
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A
6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating
80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 1245 DPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVF 1304
D A +SAS ++ D+ + Y H+ + ++ + + A +I SGS + IKV+
Sbjct: 76 DGAYALSASWDKTLRLWDVAT-GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 1305 SLEGEQLGTIRYHH 1318
+++G+ L T+ H+
Sbjct: 135 TIKGQCLATLLGHN 148
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 1245 DPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVF 1304
D A +SAS ++ D+ + Y H+ + ++ + + A +I SGS + IKV+
Sbjct: 76 DGAYALSASWDKTLRLWDVAT-GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 1305 SLEGEQLGTIRYHH 1318
+++G+ L T+ H+
Sbjct: 135 TIKGQCLATLLGHN 148
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 1245 DPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVF 1304
D A +SAS ++ D+ + Y H+ + ++ + + A +I SGS + IKV+
Sbjct: 76 DGAYALSASWDKTLRLWDVAT-GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 1305 SLEGEQLGTIRYHH 1318
+++G+ L T+ H+
Sbjct: 135 TIKGQCLATLLGHN 148
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 35.0 bits (79), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 13/124 (10%)
Query: 1237 GISFQPGLDPAKIVSASQAGDIQFLDI----RNHK--DAYLTIDAHRGSLSALAVHR-HA 1289
G+S+ P L ++SAS I DI + K DA H + ++ H H
Sbjct: 182 GLSWNPNL-SGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE 240
Query: 1290 PIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY-QVLLAAGSADA 1348
+ S + Q + ++ + + A+ VNCL+F+PY + +LA GSAD
Sbjct: 241 SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAE----VNCLSFNPYSEFILATGSADK 296
Query: 1349 CVSI 1352
V++
Sbjct: 297 TVAL 300
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 1245 DPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVF 1304
D A +SAS ++ D+ + Y H+ + ++ + + A I SGS + IKV+
Sbjct: 76 DGAYALSASWDKTLRLWDVAT-GETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVW 134
Query: 1305 SLEGEQLGTIRYHH 1318
+++G+ L T+ H+
Sbjct: 135 TIKGQCLATLLGHN 148
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In
Complex With Initiation Factor 1. This File Contains The
40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In
Complex With Initiation Factor 1. This File Contains The
40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 34.3 bits (77), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 102/269 (37%), Gaps = 54/269 (20%)
Query: 970 LPPSTIYNWSCGHFSKPLLTA-ADDTEEILARREEREKFALEHIAKCQRSCNSFDLAVSK 1028
L T Y GH S+ A + D +IL+ ERE + +C+ S + K
Sbjct: 105 LRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFS------SAEK 158
Query: 1029 LNNP--IACWDTRFEKGTKTA-LLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFP 1085
N+ ++C R+ K+A +QPF+P + + R+K+WN + +F H+
Sbjct: 159 ENHSDWVSC--VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHE-- 213
Query: 1086 DKGISKLCLVNELDVS----LLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQ------- 1134
VN L +S + + + IW + Q+ A S+I
Sbjct: 214 -------SNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPK 266
Query: 1135 ------GHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSI 1188
G GV+ N++ + V +I + K + P + +
Sbjct: 267 LQWVAVGTDQGVKIFNLMTQ---------SKAPVCTIEAEPITKAEGQKGKNPQCTSLAW 317
Query: 1189 SALTASQVHGGQLAAGFVDGSVRLYDVRT 1217
+AL G +L AGF DG +R + T
Sbjct: 318 NAL------GKKLFAGFTDGVIRTFSFET 340
>pdb|1I7G|A Chain A, Crystal Structure Of The Ligand Binding Domain From Human
Ppar-Alpha In Complex With The Agonist Az 242
Length = 287
Score = 33.5 bits (75), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 564 MAAFVLAVIVDGHR-----RGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCL 618
++ FV A+I G R G ++ G++HV HLQ + P+D P LQ + L
Sbjct: 194 ISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMA-DL 252
Query: 619 GKLWEDFTEAQTIGRRADAPAIYVPLLSE 647
+L + + I ++ ++ A PLL E
Sbjct: 253 RQLVTEHAQLVQIIKKTESDAALHPLLQE 281
>pdb|3SP6|A Chain A, Structural Basis For Iloprost As A Dual PparalphaDELTA
AGONIST
Length = 285
Score = 33.5 bits (75), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 564 MAAFVLAVIVDGHR-----RGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCL 618
++ FV A+I G R G ++ G++HV HLQ + P+D P LQ + L
Sbjct: 192 ISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMA-DL 250
Query: 619 GKLWEDFTEAQTIGRRADAPAIYVPLLSE 647
+L + + I ++ ++ A PLL E
Sbjct: 251 RQLVTEHAQLVQIIKKTESDAALHPLLQE 279
>pdb|2ZNN|A Chain A, Human Pprr Alpha Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp703
pdb|3VI8|A Chain A, Human Pprr Alpha Ligand Binding Domain In Complex With A
Synthetic Agonist Aphm13
Length = 273
Score = 33.5 bits (75), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 564 MAAFVLAVIVDGHR-----RGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCL 618
++ FV A+I G R G ++ G++HV HLQ + P+D P LQ + L
Sbjct: 180 ISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMA-DL 238
Query: 619 GKLWEDFTEAQTIGRRADAPAIYVPLLSE 647
+L + + I ++ ++ A PLL E
Sbjct: 239 RQLVTEHAQLVQIIKKTESDAALHPLLQE 267
>pdb|1K7L|A Chain A, The 2.5 Angstrom Resolution Crystal Structure Of The Human
Pparalpha Ligand Binding Domain Bound With Gw409544 And
A Co-Activator Peptide.
pdb|1K7L|C Chain C, The 2.5 Angstrom Resolution Crystal Structure Of The Human
Pparalpha Ligand Binding Domain Bound With Gw409544 And
A Co-Activator Peptide.
pdb|1K7L|E Chain E, The 2.5 Angstrom Resolution Crystal Structure Of The Human
Pparalpha Ligand Binding Domain Bound With Gw409544 And
A Co-Activator Peptide.
pdb|1K7L|G Chain G, The 2.5 Angstrom Resolution Crystal Structure Of The Human
Pparalpha Ligand Binding Domain Bound With Gw409544 And
A Co-Activator Peptide
Length = 288
Score = 33.5 bits (75), Expect = 0.83, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 564 MAAFVLAVIVDGHRRG-----QEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCL 618
++ FV A+I G R G ++ G++HV HLQ + P+D P LQ + L
Sbjct: 195 ISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMA-DL 253
Query: 619 GKLWEDFTEAQTIGRRADAPAIYVPLLSE 647
+L + + I ++ ++ A PLL E
Sbjct: 254 RQLVTEHAQLVQIIKKTESDAALHPLLQE 282
>pdb|3G8I|A Chain A, Aleglitazar, A New, Potent, And Balanced Ppar AlphaGAMMA
Agonist For The Treatment Of Type Ii Diabetes
Length = 270
Score = 33.5 bits (75), Expect = 0.83, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 564 MAAFVLAVIVDGHRRG-----QEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCL 618
++ FV A+I G R G ++ G++HV HLQ + P+D P LQ + L
Sbjct: 177 ISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMA-DL 235
Query: 619 GKLWEDFTEAQTIGRRADAPAIYVPLLSE 647
+L + + I ++ ++ A PLL E
Sbjct: 236 RQLVTEHAQLVQIIKKTESDAALHPLLQE 264
>pdb|2REW|A Chain A, Crystal Structure Of Pparalpha Ligand Binding Domain With
Bms-631707
pdb|3KDT|A Chain A, Crystal Structure Of Peroxisome
Proliferator-Activatedecepto (Pparalpha) Complex With
N-3-((2-(4-Chlorophenyl)-5-Methyl-
Oxazol-4-Yl)methoxy)benzyl)-N-(Methoxycarbonyl)glycine
pdb|3KDT|B Chain B, Crystal Structure Of Peroxisome
Proliferator-Activatedecepto (Pparalpha) Complex With
N-3-((2-(4-Chlorophenyl)-5-Methyl-
Oxazol-4-Yl)methoxy)benzyl)-N-(Methoxycarbonyl)glycine
pdb|3KDU|A Chain A, Crystal Structure Of Peroxisome
Proliferator-Activatedecepto (Pparalpha) Complex With
N-3-((2-(4-Chlorophenyl)-5-Methyl-
Oxazol-4-Yl)methoxy)benzyl)-N-((4-
Methylphenoxy)carbonyl)gl
pdb|3KDU|B Chain B, Crystal Structure Of Peroxisome
Proliferator-Activatedecepto (Pparalpha) Complex With
N-3-((2-(4-Chlorophenyl)-5-Methyl-
Oxazol-4-Yl)methoxy)benzyl)-N-((4-
Methylphenoxy)carbonyl)gl
Length = 277
Score = 33.5 bits (75), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 564 MAAFVLAVIVDGHR-----RGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCL 618
++ FV A+I G R G ++ G++HV HLQ + P+D P LQ + L
Sbjct: 184 ISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMA-DL 242
Query: 619 GKLWEDFTEAQTIGRRADAPAIYVPLLSE 647
+L + + I ++ ++ A PLL E
Sbjct: 243 RQLVTEHAQLVQIIKKTESDAALHPLLQE 271
>pdb|2NPA|A Chain A, The Crystal Structure Of The Human Pparaplpha Ligand
Binding Domain In Complex With A A-Hydroxyimino
Phenylpropanoic Acid
pdb|2NPA|C Chain C, The Crystal Structure Of The Human Pparaplpha Ligand
Binding Domain In Complex With A A-Hydroxyimino
Phenylpropanoic Acid
Length = 270
Score = 33.5 bits (75), Expect = 0.83, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 564 MAAFVLAVIVDGHRRG-----QEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCL 618
++ FV A+I G R G ++ G++HV HLQ + P+D P LQ + L
Sbjct: 177 ISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMA-DL 235
Query: 619 GKLWEDFTEAQTIGRRADAPAIYVPLLSE 647
+L + + I ++ ++ A PLL E
Sbjct: 236 RQLVTEHAQLVQIIKKTESDAALHPLLQE 264
>pdb|2P54|A Chain A, A Crystal Structure Of Ppar Alpha Bound With Src1 Peptide
And Gw735
pdb|3FEI|A Chain A, Design And Biological Evaluation Of Novel, Balanced Dual
PparaG AGONISTS
Length = 267
Score = 33.5 bits (75), Expect = 0.83, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 564 MAAFVLAVIVDGHRRG-----QEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCL 618
++ FV A+I G R G ++ G++HV HLQ + P+D P LQ + L
Sbjct: 174 ISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMA-DL 232
Query: 619 GKLWEDFTEAQTIGRRADAPAIYVPLLSE 647
+L + + I ++ ++ A PLL E
Sbjct: 233 RQLVTEHAQLVQIIKKTESDAALHPLLQE 261
>pdb|1KKQ|A Chain A, Crystal Structure Of The Human Ppar-Alpha Ligand-Binding
Domain In Complex With An Antagonist Gw6471 And A Smrt
Corepressor Motif
pdb|1KKQ|B Chain B, Crystal Structure Of The Human Ppar-Alpha Ligand-Binding
Domain In Complex With An Antagonist Gw6471 And A Smrt
Corepressor Motif
pdb|1KKQ|C Chain C, Crystal Structure Of The Human Ppar-Alpha Ligand-Binding
Domain In Complex With An Antagonist Gw6471 And A Smrt
Corepressor Motif
pdb|1KKQ|D Chain D, Crystal Structure Of The Human Ppar-Alpha Ligand-Binding
Domain In Complex With An Antagonist Gw6471 And A Smrt
Corepressor Motif
Length = 269
Score = 33.5 bits (75), Expect = 0.83, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 564 MAAFVLAVIVDGHRRG-----QEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCL 618
++ FV A+I G R G ++ G++HV HLQ + P+D P LQ + L
Sbjct: 176 ISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMA-DL 234
Query: 619 GKLWEDFTEAQTIGRRADAPAIYVPLLSE 647
+L + + I ++ ++ A PLL E
Sbjct: 235 RQLVTEHAQLVQIIKKTESDAALHPLLQE 263
>pdb|3ET1|A Chain A, Structure Of Pparalpha With 3-[5-Methoxy-1-(4-Methoxy-
Benzenesulfonyl)-1h-Indol-3-Yl]-Propionic Acid
pdb|3ET1|B Chain B, Structure Of Pparalpha With 3-[5-Methoxy-1-(4-Methoxy-
Benzenesulfonyl)-1h-Indol-3-Yl]-Propionic Acid
Length = 291
Score = 33.5 bits (75), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 564 MAAFVLAVIVDGHR-----RGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCL 618
++ FV A+I G R G ++ G++HV HLQ + P+D P LQ + L
Sbjct: 198 ISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMA-DL 256
Query: 619 GKLWEDFTEAQTIGRRADAPAIYVPLLSE 647
+L + + I ++ ++ A PLL E
Sbjct: 257 RQLVTEHAQLVQIIKKTESDAALHPLLQE 285
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 33.5 bits (75), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 66/164 (40%), Gaps = 35/164 (21%)
Query: 1056 VVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1115
V++A + I++W T +++F+ + P G++ + L D L +++ N +
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 255
Query: 1116 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ 1175
Y + I GH GV + V KEQ
Sbjct: 256 GTYGKY----------VIAGHVSGVITVHNV-----------------------FSKEQT 282
Query: 1176 MVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD 1219
+ +PS CS ++LT + + AG+ +G + +D+R+P+
Sbjct: 283 I--QLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE 324
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg
Particle Of The Proteasome
Length = 417
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 66/164 (40%), Gaps = 35/164 (21%)
Query: 1056 VVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1115
V++A + I++W T +++F+ + P G++ + L D L +++ N +
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 252
Query: 1116 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ 1175
Y + I GH GV + V KEQ
Sbjct: 253 GTYGKY----------VIAGHVSGVITVHNV-----------------------FSKEQT 279
Query: 1176 MVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD 1219
+ +PS CS ++LT + + AG+ +G + +D+R+P+
Sbjct: 280 I--QLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE 321
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 19/146 (13%)
Query: 1207 DGSVRLYDVRTPDMLVCSTR--PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIR 1264
D S+RL++++ C + HT+ V + ++F P D +IVS + ++ +++
Sbjct: 88 DHSLRLWNLQNGQ---CQYKFLGHTKDV---LSVAFSP--DNRQIVSGGRDNALRVWNVK 139
Query: 1265 NHKDAYLTIDAHRGSLSALAVH--RHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFM 1322
L+ AH +S + AP+I SG L+KV+ L +L T H ++
Sbjct: 140 GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNY- 198
Query: 1323 AQKIGSVNCLTFHPYQVLLAAGSADA 1348
V +T P L A+ D
Sbjct: 199 ------VTSVTVSPDGSLCASSDKDG 218
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
Query: 1268 DAYLTIDAHRGSLSALAVHR-HAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQ-K 1325
DA H + +A H H + S + Q + ++ PS +
Sbjct: 220 DAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSK-----PSHLVDAH 274
Query: 1326 IGSVNCLTFHPY-QVLLAAGSADACVSI 1352
VNCL+F+PY + +LA GSAD V++
Sbjct: 275 TAEVNCLSFNPYSEFILATGSADKTVAL 302
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 23/163 (14%)
Query: 1155 YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYD 1214
+L E I +WD+E + ++ I + I +L G +L +G D +VR++D
Sbjct: 137 FLATGAEDRLIRIWDIENRKIVM--ILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWD 193
Query: 1215 VRTPDMLVCSTRPHTQQVERVVGISFQPG---------LDPAKIVSASQAGD-IQFLDIR 1264
+RT CS + + V ++ PG LD A V S+ G ++ LD
Sbjct: 194 LRTGQ---CSLTLSIE--DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE 248
Query: 1265 NHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1307
N H+ S+ ++ R + SGS + +K+++L+
Sbjct: 249 NESGT-----GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ 286
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
Query: 1268 DAYLTIDAHRGSLSALAVHR-HAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQ-K 1325
DA H + +A H H + S + Q + ++ PS +
Sbjct: 220 DAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSK-----PSHLVDAH 274
Query: 1326 IGSVNCLTFHPY-QVLLAAGSADACVSI 1352
VNCL+F+PY + +LA GSAD V++
Sbjct: 275 TAEVNCLSFNPYSEFILATGSADKTVAL 302
>pdb|4A37|A Chain A, Metallo-Carboxypeptidase From Pseudomonas Aeruginosa
pdb|4A37|B Chain B, Metallo-Carboxypeptidase From Pseudomonas Aeruginosa
pdb|4A38|A Chain A, Metallo-Carboxypeptidase From Pseudomonas Aureginosa In
Complex With L-Benzylsuccinic Acid
pdb|4A38|B Chain B, Metallo-Carboxypeptidase From Pseudomonas Aureginosa In
Complex With L-Benzylsuccinic Acid
pdb|4A39|A Chain A, Metallo-Carboxypeptidase From Pseudomonas Aeruginosa In
Complex With (2-Guanidinoethylmercapto)succinic Acid
pdb|4A39|B Chain B, Metallo-Carboxypeptidase From Pseudomonas Aeruginosa In
Complex With (2-Guanidinoethylmercapto)succinic Acid
Length = 388
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 1214 DVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTI 1273
+VR S H + VER +GI G++ + ++ Q DI+ L +R H D++L +
Sbjct: 117 EVRFAYFEPYSRERHARLVERALGIE---GVERLAVGTSVQGRDIELLRVRRHPDSHLKL 173
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 62/157 (39%), Gaps = 16/157 (10%)
Query: 1198 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGD 1257
G L+ G +G V +YDV + L R RV +S+ + + S S++G
Sbjct: 146 GSFLSVGLGNGLVDIYDVESQTKL----RTMAGHQARVGCLSWNRHV----LSSGSRSGA 197
Query: 1258 IQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYH 1317
I D+R T+ H + LA +ASG +++++ + +
Sbjct: 198 IHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTN 257
Query: 1318 HPSFMAQKIGSVNCLTFHPYQV-LLAAGSADACVSIH 1353
H + +V + + P+Q LLA G IH
Sbjct: 258 HNA-------AVKAVAWCPWQSNLLATGGGTMDKQIH 287
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 15/107 (14%)
Query: 1248 KIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1307
KI G I D+R H+ + A A + I+AS S + + ++
Sbjct: 38 KIFDVRNGGQILIADLRGHEGPVWQV--------AWAHPMYGNILASCSYDRKVIIWR-- 87
Query: 1308 GEQLGTIRYHHPSFMAQKIGSVN--CLTFHPYQVLLAAGSADACVSI 1352
E+ GT H A SVN C H Y ++LA GS+D +S+
Sbjct: 88 -EENGTWEKSHE--HAGHDSSVNSVCWAPHDYGLILACGSSDGAISL 131
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 32.0 bits (71), Expect = 2.3, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 1291 IIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACV 1350
I+A+GS + IK+ S++ + I + + I SV + P+ LLAAGS D+ V
Sbjct: 26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSV---AWRPHTSLLAAGSFDSTV 82
Query: 1351 SI 1352
SI
Sbjct: 83 SI 84
Score = 30.8 bits (68), Expect = 6.0, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 1101 SLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG 1160
SLL S + + IW + D+ + + I+GH+ V+ V W YL
Sbjct: 71 SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKG----VAWSNDGYYLATCS 126
Query: 1161 EVSSIMLWDLEK 1172
S+ +W+ ++
Sbjct: 127 RDKSVWIWETDE 138
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 79/196 (40%), Gaps = 19/196 (9%)
Query: 1050 QPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN 1109
P ++ + + RI+IW E D+ + + + + K+ + L AS +
Sbjct: 25 NPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAW--SPCGNYLASASFD 82
Query: 1110 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLW- 1168
IWK +Q D + + T ++GH+ V+ V W L S+ +W
Sbjct: 83 ATTCIWKK-NQDDFECVTT----LEGHENEVK----SVAWAPSGNLLATCSRDKSVWVWE 133
Query: 1169 -DLEKEQQMVNPIPS-SSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTR 1226
D E E + V+ + S + D SQ LA+ D +V+LY D + C+T
Sbjct: 134 VDEEDEYECVSVLNSHTQDVKHVVWHPSQE---LLASASYDDTVKLYREEEDDWVCCATL 190
Query: 1227 PHTQQVERVVGISFQP 1242
+ V ++F P
Sbjct: 191 EGHEST--VWSLAFDP 204
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 14/115 (12%)
Query: 1103 LLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV 1162
+L AS +G +W D + Q L S GH V C ++ ++G + SG
Sbjct: 169 ILTASGDGTCALW---DVESGQLL----QSFHGHGADVLCLDLA---PSETGNTFVSGGC 218
Query: 1163 -SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVR 1216
M+WD+ Q + SD + S G A+G D + RLYD+R
Sbjct: 219 DKKAMVWDMRSGQCVQAFETHESDVNSVRYYPS---GDAFASGSDDATCRLYDLR 270
>pdb|3QW2|A Chain A, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Mutant N255a
pdb|3QW2|B Chain B, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Mutant N255a
pdb|3QW2|C Chain C, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Mutant N255a
pdb|3QW2|D Chain D, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Mutant N255a
Length = 392
Score = 31.2 bits (69), Expect = 4.3, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 1218 PDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR 1277
P + + S PH + +E+ SF+ G +++S + + ++ H D + ++A +
Sbjct: 29 PKIGLVSELPHFEGIEKYAPFSFEFGGHEIRLLSNAYEAAKEHWELNRHFDREI-LEAVK 87
Query: 1278 GSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQL 1311
L + + + K+L + +LEGE L
Sbjct: 88 SDLEGIVARKGTALNCGSGIKELGDIKTLEGEGL 121
>pdb|3QVX|A Chain A, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Fulgidus Mutant K367a
Length = 392
Score = 31.2 bits (69), Expect = 4.3, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 1218 PDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR 1277
P + + S PH + +E+ SF+ G +++S + + ++ H D + ++A +
Sbjct: 29 PKIGLVSELPHFEGIEKYAPFSFEFGGHEIRLLSNAYEAAKEHWELNRHFDREI-LEAVK 87
Query: 1278 GSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQL 1311
L + + + K+L + +LEGE L
Sbjct: 88 SDLEGIVARKGTALNCGSGIKELGDIKTLEGEGL 121
>pdb|3QVW|A Chain A, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Fulgidus Mutant K278a
Length = 392
Score = 31.2 bits (69), Expect = 4.3, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 1218 PDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR 1277
P + + S PH + +E+ SF+ G +++S + + ++ H D + ++A +
Sbjct: 29 PKIGLVSELPHFEGIEKYAPFSFEFGGHEIRLLSNAYEAAKEHWELNRHFDREI-LEAVK 87
Query: 1278 GSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQL 1311
L + + + K+L + +LEGE L
Sbjct: 88 SDLEGIVARKGTALNCGSGIKELGDIKTLEGEGL 121
>pdb|1U1I|A Chain A, Myo-Inositol Phosphate Synthase Mips From A. Fulgidus
pdb|1U1I|B Chain B, Myo-Inositol Phosphate Synthase Mips From A. Fulgidus
pdb|1U1I|C Chain C, Myo-Inositol Phosphate Synthase Mips From A. Fulgidus
pdb|1U1I|D Chain D, Myo-Inositol Phosphate Synthase Mips From A. Fulgidus
pdb|3QVS|A Chain A, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Fulgidus Wild Type
pdb|3QVT|A Chain A, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Fulgidus Wild- Type With The Intermediate 5-Keto
1-Phospho Glucose
Length = 392
Score = 31.2 bits (69), Expect = 4.3, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 1218 PDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR 1277
P + + S PH + +E+ SF+ G +++S + + ++ H D + ++A +
Sbjct: 29 PKIGLVSELPHFEGIEKYAPFSFEFGGHEIRLLSNAYEAAKEHWELNRHFDREI-LEAVK 87
Query: 1278 GSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQL 1311
L + + + K+L + +LEGE L
Sbjct: 88 SDLEGIVARKGTALNCGSGIKELGDIKTLEGEGL 121
>pdb|1ECW|A Chain A, Crystal Structure Of Simian Immunodeficiency Virus Matrix
Antigen (Siv Ma) At 293k.
pdb|1ED1|A Chain A, Crystal Structure Of Simian Immunodeficiency Virus Matrix
Antigen (Siv Ma) At 100k
Length = 135
Score = 30.8 bits (68), Expect = 4.7, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 10/72 (13%)
Query: 991 ADDTEEILARREEREKFALEHIAKCQRSCNSFDLAVSKLNNPIACWDTRFEKGTKTALLQ 1050
AD+ E+I R ++K+ L+H+ + F LA S L N C +L
Sbjct: 13 ADELEKIRLRPGGKKKYMLKHVVWAANELDRFGLAESLLENKEGC----------QKILS 62
Query: 1051 PFSPIVVAADEN 1062
+P+V EN
Sbjct: 63 VLAPLVPTGSEN 74
>pdb|3MCZ|A Chain A, The Structure Of An O-Methyltransferase Family Protein
From Burkholderia Thailandensis.
pdb|3MCZ|B Chain B, The Structure Of An O-Methyltransferase Family Protein
From Burkholderia Thailandensis
Length = 352
Score = 30.8 bits (68), Expect = 5.4, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 376 FRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLP 423
FRN L ER + + + I P++ HQ+ WD W EI S+ P
Sbjct: 93 FRNTALTERYLTTTSADYIG-PIV--EHQYLQWDNWPRLGEILRSEKP 137
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 1198 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGD 1257
G LA+G +DG + ++D+ T +L + H + ++F P D +V+AS G
Sbjct: 176 GKYLASGAIDGIINIFDIATGKLL-HTLEGHAMPIRS---LTFSP--DSQLLVTASDDGY 229
Query: 1258 IQFLDIRNHKDAYLTIDAH 1276
I+ D++ H + T+ H
Sbjct: 230 IKIYDVQ-HANLAGTLSGH 247
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 30.8 bits (68), Expect = 5.7, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 1272 TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVN 1330
TI H+ +S +A + ++ S S + +K++ + G+ L T++ H V
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--------NYVF 114
Query: 1331 CLTFHPYQVLLAAGSADACVSI 1352
C F+P L+ +GS D V I
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRI 136
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 30.8 bits (68), Expect = 5.7, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 1272 TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVN 1330
TI H+ +S +A + ++ S S + +K++ + G+ L T++ H V
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--------NYVF 114
Query: 1331 CLTFHPYQVLLAAGSADACVSI 1352
C F+P L+ +GS D V I
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRI 136
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 30.8 bits (68), Expect = 5.9, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 1272 TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVN 1330
TI H+ +S +A + ++ S S + +K++ + G+ L T++ H V
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--------NYVF 114
Query: 1331 CLTFHPYQVLLAAGSADACVSI 1352
C F+P L+ +GS D V I
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRI 136
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 30.4 bits (67), Expect = 6.6, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 1272 TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVN 1330
TI H+ +S +A + ++ S S + +K++ + G+ L T++ H V
Sbjct: 77 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--------NYVF 128
Query: 1331 CLTFHPYQVLLAAGSADACVSI 1352
C F+P L+ +GS D V I
Sbjct: 129 CCNFNPQSNLIVSGSFDESVRI 150
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated
Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 30.4 bits (67), Expect = 6.8, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 1272 TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVN 1330
TI H+ +S +A + ++ S S + +K++ + G+ L T++ H V
Sbjct: 59 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--------NYVF 110
Query: 1331 CLTFHPYQVLLAAGSADACVSI 1352
C F+P L+ +GS D V I
Sbjct: 111 CCNFNPQSNLIVSGSFDESVRI 132
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-5-
Nitrophenyl]benzamide
Length = 312
Score = 30.4 bits (67), Expect = 6.9, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 1272 TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVN 1330
TI H+ +S +A + ++ S S + +K++ + G+ L T++ H V
Sbjct: 60 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--------NYVF 111
Query: 1331 CLTFHPYQVLLAAGSADACVSI 1352
C F+P L+ +GS D V I
Sbjct: 112 CCNFNPQSNLIVSGSFDESVRI 133
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated
Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of Methylated
Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 30.4 bits (67), Expect = 7.0, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 1272 TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVN 1330
TI H+ +S +A + ++ S S + +K++ + G+ L T++ H V
Sbjct: 56 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--------NYVF 107
Query: 1331 CLTFHPYQVLLAAGSADACVSI 1352
C F+P L+ +GS D V I
Sbjct: 108 CCNFNPQSNLIVSGSFDESVRI 129
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 30.4 bits (67), Expect = 7.1, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 1272 TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVN 1330
TI H+ +S +A + ++ S S + +K++ + G+ L T++ H V
Sbjct: 65 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--------NYVF 116
Query: 1331 CLTFHPYQVLLAAGSADACVSI 1352
C F+P L+ +GS D V I
Sbjct: 117 CCNFNPQSNLIVSGSFDESVRI 138
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 30.4 bits (67), Expect = 7.2, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 1272 TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVN 1330
TI H+ +S +A + ++ S S + +K++ + G+ L T++ H V
Sbjct: 61 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--------NYVF 112
Query: 1331 CLTFHPYQVLLAAGSADACVSI 1352
C F+P L+ +GS D V I
Sbjct: 113 CCNFNPQSNLIVSGSFDESVRI 134
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 30.4 bits (67), Expect = 7.2, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 1272 TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVN 1330
TI H+ +S +A + ++ S S + +K++ + G+ L T++ H V
Sbjct: 60 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--------NYVF 111
Query: 1331 CLTFHPYQVLLAAGSADACVSI 1352
C F+P L+ +GS D V I
Sbjct: 112 CCNFNPQSNLIVSGSFDESVRI 133
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone
Mark That Supports Euchromatin Maintenance
Length = 318
Score = 30.4 bits (67), Expect = 7.3, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 1272 TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVN 1330
TI H+ +S +A + ++ S S + +K++ + G+ L T++ H V
Sbjct: 66 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--------NYVF 117
Query: 1331 CLTFHPYQVLLAAGSADACVSI 1352
C F+P L+ +GS D V I
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRI 139
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 30.4 bits (67), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 79/208 (37%), Gaps = 33/208 (15%)
Query: 1092 LCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ 1151
LC D S + S + ++IW KLV + H V C + +
Sbjct: 668 LCCAFSSDDSYIATCSADKKVKIW----DSATGKLVHTYDE---HSEQVNCCHFT---NK 717
Query: 1152 QSGYLYASGEVSSIM-LWDLEKEQ---QMVNPIPSSSDCSISALTASQVHGGQLAAGFVD 1207
+ L A+G + LWDL +++ M S + C S LA+ D
Sbjct: 718 SNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP------DDELLASCSAD 771
Query: 1208 GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIV---SASQAGDIQFLDIR 1264
G++RL+DVR+ + + V+R S P D IV S S GD + +
Sbjct: 772 GTLRLWDVRSAN------ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK 825
Query: 1265 NHKDAYLTIDAH-RGSLSALAVHRHAPI 1291
N L D H G L+ + H+ I
Sbjct: 826 N---KVLLFDIHTSGLLAEIHTGHHSTI 850
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 30.4 bits (67), Expect = 7.3, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 1272 TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVN 1330
TI H+ +S +A + ++ S S + +K++ + G+ L T++ H V
Sbjct: 66 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--------NYVF 117
Query: 1331 CLTFHPYQVLLAAGSADACVSI 1352
C F+P L+ +GS D V I
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRI 139
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 30.4 bits (67), Expect = 7.3, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 1272 TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVN 1330
TI H+ +S +A + ++ S S + +K++ + G+ L T++ H V
Sbjct: 66 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--------NYVF 117
Query: 1331 CLTFHPYQVLLAAGSADACVSI 1352
C F+P L+ +GS D V I
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRI 139
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 30.4 bits (67), Expect = 7.4, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 1272 TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVN 1330
TI H+ +S +A + ++ S S + +K++ + G+ L T++ H V
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--------NYVF 114
Query: 1331 CLTFHPYQVLLAAGSADACVSI 1352
C F+P L+ +GS D V I
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRI 136
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 30.4 bits (67), Expect = 7.4, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 1272 TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVN 1330
TI H+ +S +A + ++ S S + +K++ + G+ L T++ H V
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--------NYVF 114
Query: 1331 CLTFHPYQVLLAAGSADACVSI 1352
C F+P L+ +GS D V I
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRI 136
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 30.4 bits (67), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 101/249 (40%), Gaps = 23/249 (9%)
Query: 1099 DVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA 1158
+ +++ AS + +I +WK KD + A + GH V +VV+ G
Sbjct: 394 NADIIVSASRDKSIILWKL--TKDDKAYGVAQRRLTGHSHFVE--DVVL---SSDGQFAL 446
Query: 1159 SGEV-SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT 1217
SG + LWDL + + D A + + Q+ + D +++L++
Sbjct: 447 SGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFS---LDNRQIVSASRDRTIKLWNTLG 503
Query: 1218 PDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR 1277
S + + V + F P IVSAS ++ ++ N K T+ H
Sbjct: 504 ECKYTISEGGEGHR-DWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK-LRSTLAGHT 561
Query: 1278 GSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHP 1336
G +S +AV + ASG ++ ++ L EG++L ++ + ++ L F P
Sbjct: 562 GYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS---------VIHALCFSP 612
Query: 1337 YQVLLAAGS 1345
+ L A +
Sbjct: 613 NRYWLCAAT 621
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 30.4 bits (67), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 79/208 (37%), Gaps = 33/208 (15%)
Query: 1092 LCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ 1151
LC D S + S + ++IW KLV + H V C + +
Sbjct: 661 LCCAFSSDDSYIATCSADKKVKIW----DSATGKLVHTYDE---HSEQVNCCHFT---NK 710
Query: 1152 QSGYLYASGEVSSIM-LWDLEKEQ---QMVNPIPSSSDCSISALTASQVHGGQLAAGFVD 1207
+ L A+G + LWDL +++ M S + C S LA+ D
Sbjct: 711 SNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP------DDELLASCSAD 764
Query: 1208 GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIV---SASQAGDIQFLDIR 1264
G++RL+DVR+ + + V+R S P D IV S S GD + +
Sbjct: 765 GTLRLWDVRSAN------ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK 818
Query: 1265 NHKDAYLTIDAH-RGSLSALAVHRHAPI 1291
N L D H G L+ + H+ I
Sbjct: 819 N---KVLLFDIHTSGLLAEIHTGHHSTI 843
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3 Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3 Peptide
Length = 334
Score = 30.0 bits (66), Expect = 8.3, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 1272 TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVN 1330
TI H+ +S +A + ++ S S + +K++ + G+ L T++ H V
Sbjct: 82 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--------NYVF 133
Query: 1331 CLTFHPYQVLLAAGSADACVSI 1352
C F+P L+ +GS D V I
Sbjct: 134 CCNFNPQSNLIVSGSFDESVRI 155
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 30.0 bits (66), Expect = 8.6, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 1272 TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVN 1330
TI H+ +S +A + ++ S S + +K++ + G+ L T++ H V
Sbjct: 84 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--------NYVF 135
Query: 1331 CLTFHPYQVLLAAGSADACVSI 1352
C F+P L+ +GS D V I
Sbjct: 136 CCNFNPQSNLIVSGSFDESVRI 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,883,879
Number of Sequences: 62578
Number of extensions: 1632891
Number of successful extensions: 3755
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 3626
Number of HSP's gapped (non-prelim): 163
length of query: 1354
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1243
effective length of database: 8,027,179
effective search space: 9977783497
effective search space used: 9977783497
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)