Query 000681
Match_columns 1354
No_of_seqs 991 out of 2658
Neff 7.4
Searched_HMMs 29240
Date Tue Mar 26 17:48:29 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000681.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_450-454//hhsearch_pdb/000681hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 1.0 1 1 319.3 42.5 282 1041-1354 108-408 (410)
2 1nr0_A Actin interacting prote 1.0 1 1 312.6 42.3 319 1012-1354 150-608 (611)
3 3iz6_a 40S ribosomal protein R 1.0 1 1 307.6 33.3 293 1041-1354 66-372 (380)
4 1nr0_A Actin interacting prote 1.0 1 1 306.4 45.0 319 1011-1354 105-564 (611)
5 2ymu_A WD-40 repeat protein; u 1.0 1 1 305.3 47.1 304 1012-1354 265-577 (577)
6 1got_B GT-beta; complex (GTP-b 1.0 1 1 304.8 44.7 283 1041-1354 55-340 (340)
7 4gqb_B Methylosome protein 50; 1.0 1 1 304.0 38.0 284 1042-1354 31-328 (344)
8 4g56_B MGC81050 protein; prote 1.0 1 1 301.9 36.3 295 1032-1354 27-340 (357)
9 2pbi_B Guanine nucleotide-bind 1.0 1 1 297.1 42.3 286 1041-1354 64-354 (354)
10 3ow8_A WD repeat-containing pr 1.0 1 1 297.1 42.0 280 1041-1354 32-318 (321)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=319.33 Aligned_cols=282 Identities=19% Similarity=0.347 Sum_probs=254.0
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCC
Q ss_conf 99837999958999999997899499998799936789627999999869999986089989999968980999986677
Q 000681 1041 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1120 (1354)
Q Consensus 1041 ~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs~DG~IrIWdl~~~ 1120 (1354)
...|+++.|+|++.++++|+.||.|++||+.+++....+.+|. ..|+++.| ++++.+|++|+.||.|++||+.+
T Consensus 108 ~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~---~~V~~v~~--~~~~~~l~sgs~D~~i~iwd~~~- 181 (410)
T 1vyh_C 108 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT---DSVQDISF--DHSGKLLASCSADMTIKLWDFQG- 181 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCS---SCEEEEEE--CTTSSEEEEEETTSCCCEEETTS-
T ss_pred CCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCC---CCEEEEEE--CCCCCEEEEEECCCEEEEEECCC-
T ss_conf 7768999996999989999389859999899993778881667---86878998--59999999991898199995899-
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCE
Q ss_conf 78504884010245899971125037999359994999978981999988888513454249999982799997499999
Q 000681 1121 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1200 (1354)
Q Consensus 1121 ~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsI~~~s~~g~~ 1200 (1354)
+ +.+ +.+.+|...|.+ +.|++++..+++++.|+.|++||++++. ++..+.+|... |.++ .+++++.+
T Consensus 182 -~--~~~---~~~~~h~~~V~~----v~~~p~~~~l~s~s~D~~i~~wd~~~~~-~~~~~~~h~~~-v~~~-~~~~~g~~ 248 (410)
T 1vyh_C 182 -F--ECI---RTMHGHDHNVSS----VSIMPNGDHIVSASRDKTIKMWEVQTGY-CVKTFTGHREW-VRMV-RPNQDGTL 248 (410)
T ss_dssp -S--CEE---ECCCCCSSCEEE----EEECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECCSSC-EEEE-EECTTSSE
T ss_pred -C--CEE---EEECCCCCCEEE----EEEECCCCEEEEEECCCEEEEEECCCCC-EEEEEECCCCC-EEEE-EECCCCCE
T ss_conf -8--266---998289997789----9996799999999689969999899994-89999278862-8999-99899999
Q ss_pred EEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCC------------------CCCEEEEEECCCCEEEEE
Q ss_conf 99998899099998779972267416788788885999992299------------------999999997799299996
Q 000681 1201 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL------------------DPAKIVSASQAGDIQFLD 1262 (1354)
Q Consensus 1201 Lvsgs~DGsIrIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp~~------------------~g~~Lvsgs~DG~I~IWD 1262 (1354)
+++|+.||.|++||++++. ....+ .+|...|.++.|+|+. .+.++++|+.||.|++||
T Consensus 249 l~s~s~D~~v~vwd~~~~~-~~~~~---~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd 324 (410)
T 1vyh_C 249 IASCSNDQTVRVWVVATKE-CKAEL---REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 324 (410)
T ss_dssp EEEEETTSCEEEEETTTCC-EEEEE---CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEE
T ss_pred EEEECCCCEEEEEECCCCC-EEEEE---CCCCCEEEEEEECCCCCCCCHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEE
T ss_conf 9999189909999898974-36673---3787458999985865543101212555556678888999993898499998
Q ss_pred CCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEEC-CCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEE
Q ss_conf 78997217999157998589999279998999968991999957-99347898255786444567874999994499799
Q 000681 1263 IRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLL 1341 (1354)
Q Consensus 1263 i~~~~~~i~~l~~h~~~ItsLafspdg~~Lasgs~Dg~I~Iwd~-~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~L 1341 (1354)
++++ .++.++.+|.+.|++++|+|++.+|++|+.|+.|++||. +++.+..+.. |. ..|++++|+|++.+|
T Consensus 325 ~~~~-~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~-h~-------~~v~~l~~~~~~~~l 395 (410)
T 1vyh_C 325 VSTG-MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA-HE-------HFVTSLDFHKTAPYV 395 (410)
T ss_dssp TTTT-EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC-CS-------SCEEEEEECSSSSCE
T ss_pred CCCC-CEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECC-CC-------CCEEEEEECCCCCEE
T ss_conf 8999-66999977888589999949989999995979299998999906899847-77-------868999982899999
Q ss_pred EEEECCCEEEECC
Q ss_conf 9998898099919
Q 000681 1342 AAGSADACVSIHS 1354 (1354)
Q Consensus 1342 asgs~Dg~I~IWd 1354 (1354)
++|+.||.|++|+
T Consensus 396 ~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 396 VTGSVDQTVKVWE 408 (410)
T ss_dssp EEEETTSEEEEEC
T ss_pred EEEECCCCEEEEE
T ss_conf 9992799489973
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=312.61 Aligned_cols=319 Identities=15% Similarity=0.195 Sum_probs=232.2
Q ss_pred HHEEECCCCCC-EEEEEECCCCEEEEECCCC----------CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE
Q ss_conf 21000288986-2798307993999858999----------983799995899999999789949999879993678962
Q 000681 1012 IAKCQRSCNSF-DLAVSKLNNPIACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFD 1080 (1354)
Q Consensus 1012 i~~~q~~~~~~-~L~~s~~d~~I~iWd~~~~----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~l~ 1080 (1354)
+....+++++. .+++++.|+.+++||.... ..|.+++|+|++++|++++.|+.|++||..+++.+..+.
T Consensus 150 v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~ 229 (611)
T 1nr0_A 150 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFE 229 (611)
T ss_dssp EEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECB
T ss_pred CEEEEECCCCCEEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEC
T ss_conf 36999889998299999289809999799975766520025716999997999989999899919998899982866513
Q ss_pred -------CCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCEEE--------------------------
Q ss_conf -------79999998699999860899899999689809999866777850488--------------------------
Q 000681 1081 -------NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLV-------------------------- 1127 (1354)
Q Consensus 1081 -------~h~~~~~~ItsL~f~~s~d~~~Lvtgs~DG~IrIWdl~~~~~~~~lv-------------------------- 1127 (1354)
+|. +.|.+++| ++++.+|++++.|++|++||+.+.+....+.
T Consensus 230 ~~~~~~~~h~---~~V~~v~~--spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~ 304 (611)
T 1nr0_A 230 DDSLKNVAHS---GSVFGLTW--SPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG 304 (611)
T ss_dssp CTTSSSCSSS---SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTC
T ss_pred CCCCCCCCCC---CCEEEEEE--CCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCEEEEEECCC
T ss_conf 6643235667---87899999--799999999908980999968887013440478876640689997388799995899
Q ss_pred ----------EEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECC-C-------------
Q ss_conf ----------4010245899971125037999359994999978981999988888513454249-9-------------
Q 000681 1128 ----------TAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPS-S------------- 1183 (1354)
Q Consensus 1128 ----------s~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag~Dg~I~IWDl~t~~~~i~~l~~-~------------- 1183 (1354)
...+.+.+|...|.+ ++|+|++..+++++.|+.|++||+.++. +...+.. |
T Consensus 305 ~i~~~~~~~~~~~~~~~gh~~~v~~----l~~spdg~~l~s~s~D~~v~~Wd~~~~~-~~~~~~~~h~~~v~~~~~s~~~ 379 (611)
T 1nr0_A 305 FINFVNPELGSIDQVRYGHNKAITA----LSSSADGKTLFSADAEGHINSWDISTGI-SNRVFPDVHATMITGIKTTSKG 379 (611)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEE----EEECTTSSEEEEEETTSCEEEEETTTCC-EEECSSCSCSSCEEEEEECTTS
T ss_pred CEEEEECCCCCCCEEECCCCCCEEE----EEEECCCCEEEEEECCCCEEEEECCCCC-EEEECCCCCCCEEEEEEECCCC
T ss_conf 6899968899744698378888899----9991899989999589849999788792-5632166776507899987899
Q ss_pred -------------------------------------------------------------------CCCCEEEEEEECC
Q ss_conf -------------------------------------------------------------------9998279999749
Q 000681 1184 -------------------------------------------------------------------SDCSISALTASQV 1196 (1354)
Q Consensus 1184 -------------------------------------------------------------------~~~~VtsI~~~s~ 1196 (1354)
+...+.++ .+++
T Consensus 380 ~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~v-a~sp 458 (611)
T 1nr0_A 380 DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCV-ALSN 458 (611)
T ss_dssp CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEE-EECT
T ss_pred CEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEEECCCCEEEEEECCEEEEEECCCEEEEECCCCCEEE-EEEC
T ss_conf 699998489668954688543565212001489970799807996999996763999848943464068895499-9928
Q ss_pred CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEE--EE
Q ss_conf 9999999988990999987799722674167887888859999922999999999977992999967899721799--91
Q 000681 1197 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLT--ID 1274 (1354)
Q Consensus 1197 ~g~~Lvsgs~DGsIrIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp~~~g~~Lvsgs~DG~I~IWDi~~~~~~i~~--l~ 1274 (1354)
+++++++|+.||.|++||+..+. ..... . .+|...|.+++|+|+ +.+|++++.|+.|++||+.+..+.... +.
T Consensus 459 dg~~lasgs~D~~v~lwd~~~~~-~~~~~-~-~~h~~~v~~v~fspd--g~~las~s~d~~v~~w~~~~~~~~~~~~~~~ 533 (611)
T 1nr0_A 459 DKQFVAVGGQDSKVHVYKLSGAS-VSEVK-T-IVHPAEITSVAFSNN--GAFLVATDQSRKVIPYSVANNFELAHTNSWT 533 (611)
T ss_dssp TSCEEEEEETTSEEEEEEEETTE-EEEEE-E-EECSSCEEEEEECTT--SSEEEEEETTSCEEEEEGGGTTEESCCCCCC
T ss_pred CCCEEEEECCCCEEEEEECCCCC-EEEEE-C-CCCCCCEEEEEECCC--CCEEEEECCCCCEEEEECCCCCCEEEEEEEE
T ss_conf 99899996899739999945992-22410-1-577886079999899--9989999489989998857787223210264
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC-C-EE-EEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEE
Q ss_conf 5799858999927999899996899199995799-3-47-8982557864445678749999944997999998898099
Q 000681 1275 AHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG-E-QL-GTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVS 1351 (1354)
Q Consensus 1275 ~h~~~ItsLafspdg~~Lasgs~Dg~I~Iwd~~g-~-~l-~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~I~ 1351 (1354)
.|...|.+++|+|++++|++|+.|+.|++|+++. . .+ ..+.. |. .+.|.+++|+|++. |++++.|++|+
T Consensus 534 ~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~-h~------~~~v~~v~fs~d~~-l~s~~~D~~i~ 605 (611)
T 1nr0_A 534 FHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGA-HA------MSSVNSVIWLNETT-IVSAGQDSNIK 605 (611)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTS-ST------TSCEEEEEEEETTE-EEEEETTSCEE
T ss_pred ECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCHHHCC-CC------CCCEEEEEECCCCE-EEEECCCCCEE
T ss_conf 046642589989989979999799729999788755563264446-76------56711899858997-99952887789
Q ss_pred ECC
Q ss_conf 919
Q 000681 1352 IHS 1354 (1354)
Q Consensus 1352 IWd 1354 (1354)
+|+
T Consensus 606 lW~ 608 (611)
T 1nr0_A 606 FWN 608 (611)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 984
No 3
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=1.00 E-value=1 Score=307.59 Aligned_cols=293 Identities=15% Similarity=0.237 Sum_probs=242.8
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCC
Q ss_conf 99837999958999999997899499998799936789627999999869999986089989999968980999986677
Q 000681 1041 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1120 (1354)
Q Consensus 1041 ~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs~DG~IrIWdl~~~ 1120 (1354)
...|++++|+|++++|++|+.|++|++||..+++....+..|. ..|.+++| ++++.+|++|+.|+.+++|++...
T Consensus 66 ~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~---~~v~~~~~--s~~g~~las~~~d~~v~iw~~~~~ 140 (380)
T 3iz6_a 66 SGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHC---PWVMECAF--APNGQSVACGGLDSACSIFNLSSQ 140 (380)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCC---TTCCCCEE--CTTSSEEEECCSSSCCEEEECCCC
T ss_pred CCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEECCC---CCEEEEEE--CCCCCEEEEEECCCCEEEEECCCC
T ss_conf 3477899996899989999189809998788886014885599---87899999--899998999547985899989777
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCEEEEEEECCC-CEEEEEECCCEEEEEECCCCCEEEEEE-----CCCCCCCEEEEEEE
Q ss_conf 785048840102458999711250379993599-949999789819999888885134542-----49999982799997
Q 000681 1121 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS-GYLYASGEVSSIMLWDLEKEQQMVNPI-----PSSSDCSISALTAS 1194 (1354)
Q Consensus 1121 ~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~-~~Llsag~Dg~I~IWDl~t~~~~i~~l-----~~~~~~~VtsI~~~ 1194 (1354)
..........+.+.+|...+.+ +.|.+++ ..+++++.|+.|++||++++. ++..+ .+|.. .|.++.+.
T Consensus 141 ~~~~~~~~~~~~~~gh~~~v~~----~~~~~~~~~~l~s~s~D~~i~~wd~~~~~-~~~~~~~~~~~~h~~-~v~~~~~~ 214 (380)
T 3iz6_a 141 ADRDGNMPVSRVLTGHKGYASS----CQYVPDQETRLITGSGDQTCVLWDVTTGQ-RISIFGSEFPSGHTA-DVLSLSIN 214 (380)
T ss_dssp SSCCCSSTTCCBCCCCSSCCCC----CBCCSSSSSCEEEECTTSCEEEECTTTCC-EEEEECCCSSSSCCS-CEEEEEEC
T ss_pred CCCCCCCCCEEECCCCCCCEEE----EEEECCCCCEEEEECCCCCEEEEECCCCC-EEEEEECCCCCCCCC-CEEEEEEE
T ss_conf 5556773312640689754689----99964899789997799819999867795-789960566788756-76999920
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEE
Q ss_conf 49999999998899099998779972267416788788885999992299999999997799299996789972179991
Q 000681 1195 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID 1274 (1354)
Q Consensus 1195 s~~g~~Lvsgs~DGsIrIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp~~~g~~Lvsgs~DG~I~IWDi~~~~~~i~~l~ 1274 (1354)
+.+++++++|+.||.|++||++........+ .+|...|.+++|+|+ +.+|++|+.||.|++||++++ ..+..+.
T Consensus 215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~---~~h~~~v~~v~~~p~--~~~l~s~s~D~~i~lwd~~~~-~~~~~~~ 288 (380)
T 3iz6_a 215 SLNANMFISGSCDTTVRLWDLRITSRAVRTY---HGHEGDINSVKFFPD--GQRFGTGSDDGTCRLFDMRTG-HQLQVYN 288 (380)
T ss_dssp SSSCCEEEEEETTSCEEEEETTTTCCCCEEE---CCCSSCCCEEEECTT--SSEEEEECSSSCEEEEETTTT-EEEEEEC
T ss_pred CCCCCEEEEEECCCEEEEEECCCCCCCEEEE---CCCCCCEEEEEEECC--CCEEEEECCCCEEEEEECCCC-CEEEEEC
T ss_conf 6999989999789869999788897346998---874887579999169--996999838996999988899-6889861
Q ss_pred CCC-------CCEEEEEECCCCCEEEEEECCCCEEEEEC-CCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEEC
Q ss_conf 579-------98589999279998999968991999957-9934789825578644456787499999449979999988
Q 000681 1275 AHR-------GSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA 1346 (1354)
Q Consensus 1275 ~h~-------~~ItsLafspdg~~Lasgs~Dg~I~Iwd~-~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~ 1346 (1354)
.+. ..+++++|+|++.++++|+.||.|++||. .++.+..+.. . ...|.+.|++++|+|++.+|++|+.
T Consensus 289 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~-~---~~~h~~~v~~l~~s~dg~~l~sgs~ 364 (380)
T 3iz6_a 289 REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGT-L---QNSHEGRISCLGLSSDGSALCTGSW 364 (380)
T ss_dssp CCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECC-S---CSSCCCCCCEEEECSSSSEEEEECT
T ss_pred CCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEC-C---CCCCCCCEEEEEECCCCCEEEEEEC
T ss_conf 56555665568638999889999899997999799998877815789702-3---6777784579998999998999608
Q ss_pred CCEEEECC
Q ss_conf 98099919
Q 000681 1347 DACVSIHS 1354 (1354)
Q Consensus 1347 Dg~I~IWd 1354 (1354)
|+.|++|+
T Consensus 365 D~~i~iW~ 372 (380)
T 3iz6_a 365 DKNLKIWA 372 (380)
T ss_dssp TSCEEEEE
T ss_pred CCCEEEEE
T ss_conf 99889995
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=306.37 Aligned_cols=319 Identities=16% Similarity=0.246 Sum_probs=252.2
Q ss_pred HHHEEECCCCCCEEEEEECCC----CEEEEECCC--------CCCEEEEEECCCCC-EEEEEECCCCEEEEECCCCCEEE
Q ss_conf 321000288986279830799----399985899--------99837999958999-99999789949999879993678
Q 000681 1011 HIAKCQRSCNSFDLAVSKLNN----PIACWDTRF--------EKGTKTALLQPFSP-IVVAADENERIKIWNYEEDTLLN 1077 (1354)
Q Consensus 1011 ~i~~~q~~~~~~~L~~s~~d~----~I~iWd~~~--------~~~I~sL~fspdg~-~Latgs~Dg~I~IWd~~tg~~l~ 1077 (1354)
.+....+++++..+++++.+. .+.+||... ...|++++|+|+++ .|++|+.|+.|++|+..+++.+.
T Consensus 105 ~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~ 184 (611)
T 1nr0_A 105 PVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS 184 (611)
T ss_dssp CEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE
T ss_pred CEEEEEECCCCCEEEEEECCCCCEEEEEEEECCCCCCEECCCCCCCEEEEECCCCCEEEEEEECCCEEEEEECCCCEEEE
T ss_conf 44899989999979999899773669999638997632547889836999889998299999289809999799975766
Q ss_pred EEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCEEEEEEE----CCCCCCCCCCCCEEEEEEECCC
Q ss_conf 962799999986999998608998999996898099998667778504884010----2458999711250379993599
Q 000681 1078 SFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFS----SIQGHKPGVRCSNVVVDWQQQS 1153 (1354)
Q Consensus 1078 ~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs~DG~IrIWdl~~~~~~~~lvs~~~----~l~~h~~~V~si~~~i~~sp~~ 1153 (1354)
.+.+|. ..|++++| ++++.+|++++.||+|++|+..+ ++.... +. ...+|...|.+ ++|+|++
T Consensus 185 ~l~~H~---~~V~~v~f--spdg~~las~s~D~~i~lwd~~~--g~~~~~--~~~~~~~~~~h~~~V~~----v~~spdg 251 (611)
T 1nr0_A 185 TFGEHT---KFVHSVRY--NPDGSLFASTGGDGTIVLYNGVD--GTKTGV--FEDDSLKNVAHSGSVFG----LTWSPDG 251 (611)
T ss_dssp EECCCS---SCEEEEEE--CTTSSEEEEEETTSCEEEEETTT--CCEEEE--CBCTTSSSCSSSSCEEE----EEECTTS
T ss_pred EECCCC---CCEEEEEE--CCCCCEEEEEECCCCEEEEECCC--CCEEEE--ECCCCCCCCCCCCCEEE----EEECCCC
T ss_conf 520025---71699999--79999899998999199988999--828665--13664323566787899----9997999
Q ss_pred CEEEEEECCCEEEEEECCCCCEEEEEE-------------------------------------------CCCCCCCEEE
Q ss_conf 949999789819999888885134542-------------------------------------------4999998279
Q 000681 1154 GYLYASGEVSSIMLWDLEKEQQMVNPI-------------------------------------------PSSSDCSISA 1190 (1354)
Q Consensus 1154 ~~Llsag~Dg~I~IWDl~t~~~~i~~l-------------------------------------------~~~~~~~Vts 1190 (1354)
..+++++.|+.|++||+.+++ ++..+ .+|.. .|++
T Consensus 252 ~~l~s~s~D~~v~lWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~-~v~~ 329 (611)
T 1nr0_A 252 TKIASASADKTIKIWNVATLK-VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNK-AITA 329 (611)
T ss_dssp SEEEEEETTSEEEEEETTTTE-EEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSS-CEEE
T ss_pred CEEEEEECCCEEEEEECCCCC-EEEEECCCCCCCCEEEEEEECCCEEEEEECCCCEEEEECCCCCCCEEECCCCC-CEEE
T ss_conf 999999089809999688870-13440478876640689997388799995899689996889974469837888-8899
Q ss_pred EEEECCCCCEEEEEECCCEEEEEECCCCCEEEE------------------------------EECCC------------
Q ss_conf 999749999999998899099998779972267------------------------------41678------------
Q 000681 1191 LTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVC------------------------------STRPH------------ 1228 (1354)
Q Consensus 1191 I~~~s~~g~~Lvsgs~DGsIrIwDlrs~~~~~~------------------------------~~~~~------------ 1228 (1354)
+ .++++++++++++.||.|++||+.++..... .+...
T Consensus 330 l-~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~ 408 (611)
T 1nr0_A 330 L-SSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVAN 408 (611)
T ss_dssp E-EECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEE
T ss_pred E-EEECCCCEEEEEECCCCEEEEECCCCCEEEECCCCCCCEEEEEEECCCCCEEEEECCCCEEEEECCCCCCCCCCEEEE
T ss_conf 9-991899989999589849999788792563216677650789998789969999848966895468854356521200
Q ss_pred -------------C-----------------------CCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCC-CEE
Q ss_conf -------------8-----------------------788885999992299999999997799299996789972-179
Q 000681 1229 -------------T-----------------------QQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKD-AYL 1271 (1354)
Q Consensus 1229 -------------~-----------------------~h~~~I~si~fsp~~~g~~Lvsgs~DG~I~IWDi~~~~~-~i~ 1271 (1354)
. .|...+.+++|+|+ +.++++|+.|+.|++||+..+.. .+.
T Consensus 409 ~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spd--g~~lasgs~D~~v~lwd~~~~~~~~~~ 486 (611)
T 1nr0_A 409 KLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSND--KQFVAVGGQDSKVHVYKLSGASVSEVK 486 (611)
T ss_dssp ECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTT--SCEEEEEETTSEEEEEEEETTEEEEEE
T ss_pred ECCCCCCEEEEECCCCEEEEEECCEEEEEECCCEEEEECCCCCEEEEEECC--CCEEEEECCCCEEEEEECCCCCEEEEE
T ss_conf 148997079980799699999676399984894346406889549999289--989999689973999994599222410
Q ss_pred EEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECC--CCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCE
Q ss_conf 991579985899992799989999689919999579--934789825578644456787499999449979999988980
Q 000681 1272 TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE--GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADAC 1349 (1354)
Q Consensus 1272 ~l~~h~~~ItsLafspdg~~Lasgs~Dg~I~Iwd~~--g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~ 1349 (1354)
. ..|...|++++|+|++.+|++++.|+.|++|+.. ++.+.. ...+.|...|.+++|+|++++|++++.|+.
T Consensus 487 ~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~------~~~~~H~~~V~~v~fspdg~~lasgs~D~~ 559 (611)
T 1nr0_A 487 T-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT------NSWTFHTAKVACVSWSPDNVRLATGSLDNS 559 (611)
T ss_dssp E-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC------CCCCCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred C-CCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCEEEE------EEEEECCCCEEEEEECCCCCEEEEEECCCC
T ss_conf 1-577886079999899998999948998999885778722321------026404664258998998997999979972
Q ss_pred EEECC
Q ss_conf 99919
Q 000681 1350 VSIHS 1354 (1354)
Q Consensus 1350 I~IWd 1354 (1354)
|++|+
T Consensus 560 v~lW~ 564 (611)
T 1nr0_A 560 VIVWN 564 (611)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 99997
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=305.25 Aligned_cols=304 Identities=19% Similarity=0.355 Sum_probs=265.5
Q ss_pred HHEEECCCCCCEEEEEECCCCEEEEECCCC---------CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECC
Q ss_conf 210002889862798307993999858999---------98379999589999999978994999987999367896279
Q 000681 1012 IAKCQRSCNSFDLAVSKLNNPIACWDTRFE---------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNH 1082 (1354)
Q Consensus 1012 i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~---------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~l~~h 1082 (1354)
+....+.+++..++++..++.+++|+.... ..|.+++|+|++.++++++.|+.|++|+.. +..+..+.+|
T Consensus 265 v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~ 343 (577)
T 2ymu_A 265 VNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGH 343 (577)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCC
T ss_pred EEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECC-CCEEEEEECC
T ss_conf 799999689999999959997999948995899970688976999999999999999699959999699-9725787478
Q ss_pred CCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECC
Q ss_conf 99999869999986089989999968980999986677785048840102458999711250379993599949999789
Q 000681 1083 DFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV 1162 (1354)
Q Consensus 1083 ~~~~~~ItsL~f~~s~d~~~Lvtgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag~D 1162 (1354)
. ..+.+++| ++++.++++++.||.|++|+.. ++ ++ ..+.+|...+.+ ++|++++..+++++.|
T Consensus 344 ~---~~v~~~~~--s~~g~~l~~~~~dg~v~~~~~~---~~--~~---~~~~~~~~~v~~----~~~s~dg~~l~~~~~d 406 (577)
T 2ymu_A 344 S---SSVWGVAF--SPDGQTIASASDDKTVKLWNRN---GQ--LL---QTLTGHSSSVRG----VAFSPDGQTIASASDD 406 (577)
T ss_dssp S---SCEEEEEE--CTTSSEEEEEETTSEEEEEETT---CC--EE---EEEECCSSCEEE----EEECTTSSCEEEEETT
T ss_pred C---CCEEEEEE--CCCCCEEEEEECCCEEEEECCC---CC--EE---EEECCCCCCEEE----EEECCCCCEEEEEECC
T ss_conf 8---97799999--8999999999699989999089---97--89---985278897489----9998999999999499
Q ss_pred CEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEEC
Q ss_conf 81999988888513454249999982799997499999999988990999987799722674167887888859999922
Q 000681 1163 SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQP 1242 (1354)
Q Consensus 1163 g~I~IWDl~t~~~~i~~l~~~~~~~VtsI~~~s~~g~~Lvsgs~DGsIrIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp 1242 (1354)
+.|++||.. ++ .+..+..|... |+++ .++++++++++++.||.|++||.. ++ ....+ .+|...|.+++|+|
T Consensus 407 ~~v~~~~~~-~~-~~~~~~~~~~~-v~~~-~~s~d~~~l~~~~~d~~v~~w~~~-~~-~~~~~---~~~~~~v~~~~~sp 477 (577)
T 2ymu_A 407 KTVKLWNRN-GQ-LLQTLTGHSSS-VWGV-AFSPDDQTIASASDDKTVKLWNRN-GQ-LLQTL---TGHSSSVRGVAFSP 477 (577)
T ss_dssp SEEEEECTT-CC-EEEEEECCSSC-EEEE-EECTTSSEEEEEETTSEEEEEETT-SC-EEEEE---ECCSSCEEEEEECT
T ss_pred CEEEEEECC-CC-EEEEECCCCCC-EEEE-EECCCCCEEEEECCCCEEEEEECC-CC-EEEEE---CCCCCCEEEEEECC
T ss_conf 989999699-97-89896288997-5799-998999999999399989999799-98-89997---27899778999969
Q ss_pred CCCCCEEEEEECCCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCC
Q ss_conf 99999999997799299996789972179991579985899992799989999689919999579934789825578644
Q 000681 1243 GLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFM 1322 (1354)
Q Consensus 1243 ~~~g~~Lvsgs~DG~I~IWDi~~~~~~i~~l~~h~~~ItsLafspdg~~Lasgs~Dg~I~Iwd~~g~~l~~i~~~h~~fl 1322 (1354)
+ +.+|++++.|+.|++||.. + +.+..+.+|...|++++|+|++++|++++.|+.|++||.+++.+..+.+ |.
T Consensus 478 d--~~~las~~~d~~i~iw~~~-~-~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~-h~--- 549 (577)
T 2ymu_A 478 D--GQTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG-HS--- 549 (577)
T ss_dssp T--SCEEEEEETTSEEEEEETT-S-CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEEC-CS---
T ss_pred C--CCEEEEEECCCEEEEECCC-C-CEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEECC-CC---
T ss_conf 9--9999999198979999399-9-7899986799998999991899999999896999999699978989718-88---
Q ss_pred CCCCCCEEEEEEECCCCEEEEEECCCEEEECC
Q ss_conf 45678749999944997999998898099919
Q 000681 1323 AQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1323 ~~~~~~V~sLafspdg~~Lasgs~Dg~I~IWd 1354 (1354)
+.|++++|+|++++|++++.|+.|++||
T Consensus 550 ----~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 550 ----SSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp ----SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ----CCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf ----8878999968999999990899999969
No 6
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=1.00 E-value=1 Score=304.78 Aligned_cols=283 Identities=15% Similarity=0.261 Sum_probs=248.7
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCC
Q ss_conf 99837999958999999997899499998799936789627999999869999986089989999968980999986677
Q 000681 1041 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1120 (1354)
Q Consensus 1041 ~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs~DG~IrIWdl~~~ 1120 (1354)
...|+++.|+|++++|++|+.||.|++||..+++.+..+..|. ..|.++.| ++++.+|++|+.|+.|++|++.+.
T Consensus 55 ~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~---~~v~~~~~--s~~~~~l~s~~~d~~v~iw~~~~~ 129 (340)
T 1got_B 55 LAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRS---SWVMTCAY--APSGNYVACGGLDNICSIYNLKTR 129 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSS---SCEEEEEE--CTTSSEEEEEETTCEEEEEETTTC
T ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECCC---CCEEEEEE--CCCCCEEEEEECCCEEEEEECCCC
T ss_conf 7836899988999999998188968999899987433760388---61889999--999999999808981999979668
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCE
Q ss_conf 78504884010245899971125037999359994999978981999988888513454249999982799997499999
Q 000681 1121 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1200 (1354)
Q Consensus 1121 ~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsI~~~s~~g~~ 1200 (1354)
.+..... +.+.+|...+.+ +.|+++ +.+++++.|+.|++||++++. .+..+.+|... |+++ .+++++.+
T Consensus 130 ~~~~~~~---~~~~~h~~~v~~----~~~~~~-~~l~s~s~d~~i~~wd~~~~~-~~~~~~~h~~~-v~~~-~~~~~~~~ 198 (340)
T 1got_B 130 EGNVRVS---RELAGHTGYLSC----CRFLDD-NQIVTSSGDTTCALWDIETGQ-QTTTFTGHTGD-VMSL-SLAPDTRL 198 (340)
T ss_dssp SBSCEEE---EEEECCSSCEEE----EEEEET-TEEEEEETTSCEEEEETTTTE-EEEEECCCSSC-EEEE-EECTTSSE
T ss_pred CCCCEEE---EEECCCCCCEEE----EEECCC-CCEEEEECCCCEEEEECCCCC-EEEEECCCCCC-EEEE-EECCCCCE
T ss_conf 8861367---784487763899----998799-969999899929999899991-88997699986-6899-99899999
Q ss_pred EEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEEC--CCC
Q ss_conf 999988990999987799722674167887888859999922999999999977992999967899721799915--799
Q 000681 1201 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA--HRG 1278 (1354)
Q Consensus 1201 Lvsgs~DGsIrIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp~~~g~~Lvsgs~DG~I~IWDi~~~~~~i~~l~~--h~~ 1278 (1354)
+++|+.||.|++||++++. ....+ .+|...|.+++|+|+ +.+|++|+.||.|++||++.+ ..+..+.. +..
T Consensus 199 l~sg~~d~~v~~wd~~~~~-~~~~~---~~h~~~v~~v~~~p~--~~~l~s~s~d~~v~iwd~~~~-~~~~~~~~~~~~~ 271 (340)
T 1got_B 199 FVSGACDASAKLWDVREGM-CRQTF---TGHESDINAICFFPN--GNAFATGSDDATCRLFDLRAD-QELMTYSHDNIIC 271 (340)
T ss_dssp EEEEETTSCEEEEETTTCS-EEEEE---CCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTT-EEEEEECCTTCCS
T ss_pred EEEEECCCCEEEEECCCCE-EEEEE---CCCCCCEEEEEECCC--CCEEEEECCCCCEEEEECCCC-CEEEEECCCCCCC
T ss_conf 9999389939997789981-67897---487687799999499--998999748981999988999-1899972688524
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEE-CCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEECC
Q ss_conf 858999927999899996899199995-7993478982557864445678749999944997999998898099919
Q 000681 1279 SLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1279 ~ItsLafspdg~~Lasgs~Dg~I~Iwd-~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~I~IWd 1354 (1354)
.|++++|+|++.++++|+.|+.|++|| .+++.+..+.+ |. +.|.+++|+|++.+|++|+.|+.|+||+
T Consensus 272 ~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~-h~-------~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG-HD-------NRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-CS-------SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEEEC-CC-------CCEEEEEECCCCCEEEEECCCCCEEECC
T ss_conf 169999989999999977999099988413838658505-77-------8488999829999899972886189559
No 7
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=1.00 E-value=1 Score=304.05 Aligned_cols=284 Identities=17% Similarity=0.223 Sum_probs=232.0
Q ss_pred CCEEEEEECCCCCEEEEEECCCCEEEEECCC-----------CCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCC
Q ss_conf 9837999958999999997899499998799-----------93678962799999986999998608998999996898
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEE-----------DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG 1110 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~t-----------g~~l~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs~DG 1110 (1354)
..|.+++|+|||.+|++++ |+++++||... .........+. ..|.+++| +++ +.|++|+.||
T Consensus 31 ~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~--s~d-~~l~~~s~dg 103 (344)
T 4gqb_B 31 RQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTE---AGVADLTW--VGE-RGILVASDSG 103 (344)
T ss_dssp SEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEES---SCEEEEEE--ETT-TEEEEEETTS
T ss_pred CCEEEEEECCCCCEEEEEE-CCCEEEEECEEEEECCCCCCCCCCEEEEEECCC---CCEEEEEE--ECC-CEEEEEECCC
T ss_conf 8888999989999999990-895687623056503655567765466660367---98789999--299-8299998979
Q ss_pred EEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEE
Q ss_conf 09999866777850488401024589997112503799935999499997898199998888851345424999998279
Q 000681 1111 NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISA 1190 (1354)
Q Consensus 1111 ~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag~Dg~I~IWDl~t~~~~i~~l~~~~~~~Vts 1190 (1354)
.|+|||+.+.+...... ....+|...|.+ ++|++++..+++++.|+.|++||+++++ ++..+.+|... |++
T Consensus 104 ~v~lWd~~~~~~~~~~~---~~~~~H~~~V~~----v~~spdg~~l~sgs~d~~i~iwd~~~~~-~~~~~~~h~~~-V~~ 174 (344)
T 4gqb_B 104 AVELWELDENETLIVSK---FCKYEHDDIVST----VSVLSSGTQAVSGSKDICIKVWDLAQQV-VLSSYRAHAAQ-VTC 174 (344)
T ss_dssp EEEEEEECTTSSCEEEE---EEEECCSSCEEE----EEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSC-EEE
T ss_pred EEEEEECCCCCCEEEEE---CCCCCCCCCEEE----EEECCCCCEEEEEECCCEEEEEECCCCC-EEEEECCCCCC-EEE
T ss_conf 89999653887435860---134678997899----9998998999999498939999999996-99997576885-578
Q ss_pred EEEECCCC-CEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCC
Q ss_conf 99974999-99999988990999987799722674167887888859999922999999999977992999967899721
Q 000681 1191 LTASQVHG-GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDA 1269 (1354)
Q Consensus 1191 I~~~s~~g-~~Lvsgs~DGsIrIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp~~~g~~Lvsgs~DG~I~IWDi~~~~~~ 1269 (1354)
+ .+++++ .++++++.||.|++||+++++. ...+ ....+...+.+++|+|+ ++.++++|+.||.|++||++++ ++
T Consensus 175 ~-~~~~~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~-~~~~~~~~~~~~~~~p~-~~~~l~sg~~dg~v~~wd~~~~-~~ 249 (344)
T 4gqb_B 175 V-AASPHKDSVFLSCSEDNRILLWDTRCPKP-ASQI-GCSAPGYLPTSLAWHPQ-QSEVFVFGDENGTVSLVDTKST-SC 249 (344)
T ss_dssp E-EECSSCTTEEEEEETTSCEEEEETTSSSC-EEEC-C----CCCEEEEEECSS-CTTEEEEEETTSEEEEEESCC---C
T ss_pred E-EECCCCCCCEEEECCCCCCCCCCCCCCCE-EEEE-ECCEEECCCEEEEECCC-CCCCEEEECCCCCEEEEECCCC-CE
T ss_conf 8-86589997401103443551023445520-0111-01000012123566179-9960588615871898989999-59
Q ss_pred EEEEECCCCCEEEEEECCCC-CEEEEEECCCCEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCC-EEEEEECC
Q ss_conf 79991579985899992799-98999968991999957993478982557864445678749999944997-99999889
Q 000681 1270 YLTIDAHRGSLSALAVHRHA-PIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQV-LLAAGSAD 1347 (1354)
Q Consensus 1270 i~~l~~h~~~ItsLafspdg-~~Lasgs~Dg~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~-~Lasgs~D 1347 (1354)
+.++.+|...|++++|+|++ .+|++|+.|+.|+|||.....+..+.+ |. +.|++++|+|++. +|++++.|
T Consensus 250 ~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~-H~-------~~V~~v~~sp~~~~llas~s~D 321 (344)
T 4gqb_B 250 VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQA-HR-------DFVRDATWSPLNHSLLTTVGWD 321 (344)
T ss_dssp CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECC-CS-------SCEEEEEECSSSTTEEEEEETT
T ss_pred EEEECCCCCCEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEECC-CC-------CCEEEEEEECCCCEEEEEECCC
T ss_conf 899837889988999926999099999389949999999996999728-89-------9778999917999699999379
Q ss_pred CEEEECC
Q ss_conf 8099919
Q 000681 1348 ACVSIHS 1354 (1354)
Q Consensus 1348 g~I~IWd 1354 (1354)
+.|++|+
T Consensus 322 ~~v~~w~ 328 (344)
T 4gqb_B 322 HQVVHHV 328 (344)
T ss_dssp SCEEEEE
T ss_pred CEEEEEE
T ss_conf 9599998
No 8
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=1.00 E-value=1 Score=301.92 Aligned_cols=295 Identities=17% Similarity=0.239 Sum_probs=240.0
Q ss_pred CEEEEECCCC------CCEEEEEECCCCCEEEEEEC------CCCEEEEECCCCCE----EEEEECCCCCCCCEEEEEEE
Q ss_conf 3999858999------98379999589999999978------99499998799936----78962799999986999998
Q 000681 1032 PIACWDTRFE------KGTKTALLQPFSPIVVAADE------NERIKIWNYEEDTL----LNSFDNHDFPDKGISKLCLV 1095 (1354)
Q Consensus 1032 ~I~iWd~~~~------~~I~sL~fspdg~~Latgs~------Dg~I~IWd~~tg~~----l~~l~~h~~~~~~ItsL~f~ 1095 (1354)
....|+.... ..|++++|+|||.+|++|+. |+.|++|+..++.. ......|. ..|++++|
T Consensus 27 ~~~~w~~p~~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~---~~V~~~~~- 102 (357)
T 4g56_B 27 KGSAWGRPVTAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTE---AGVTDVAW- 102 (357)
T ss_dssp -------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECS---SCEEEEEE-
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCC---CCEEEEEE-
T ss_conf 55526899997442107889999989999999982898713268699978999871405850247887---98799999-
Q ss_pred EECCCCEEEEEECCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCE
Q ss_conf 60899899999689809999866777850488401024589997112503799935999499997898199998888851
Q 000681 1096 NELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ 1175 (1354)
Q Consensus 1096 ~s~d~~~Lvtgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag~Dg~I~IWDl~t~~~ 1175 (1354)
++++ .+++++.||.|++||+.+. +...... ....+|...|.+ ++|++++..+++++.|+.|++||+++++
T Consensus 103 -s~d~-~~l~~s~dg~v~lWd~~~~--~~~~~~~-~~~~~h~~~V~~----v~~spdg~~l~sgs~dg~v~iwd~~~~~- 172 (357)
T 4g56_B 103 -VSEK-GILVASDSGAVELWEILEK--ESLLVNK-FAKYEHDDIVKT----LSVFSDGTQAVSGGKDFSVKVWDLSQKA- 172 (357)
T ss_dssp -ETTT-EEEEEETTSCEEEC----------CCCC-EEECCCSSCEEE----EEECSSSSEEEEEETTSCEEEEETTTTE-
T ss_pred -CCCC-CEEEEECCCEEEEEECCCC--CEEEEEE-ECCCCCCCCEEE----EEECCCCCEEEEEECCCEEEEEECCCCC-
T ss_conf -6899-8999989998999344566--4047874-213788898899----9997998999999698939999899995-
Q ss_pred EEEEECCCCCCCEEEEEEECCCC-CEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEEC
Q ss_conf 34542499999827999974999-99999988990999987799722674167887888859999922999999999977
Q 000681 1176 MVNPIPSSSDCSISALTASQVHG-GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ 1254 (1354)
Q Consensus 1176 ~i~~l~~~~~~~VtsI~~~s~~g-~~Lvsgs~DGsIrIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp~~~g~~Lvsgs~ 1254 (1354)
++..+..|... |+++ .+++++ ..+++++.||.|++||+++++.. ... ....+...+.+++|+|+ ++.++++|+.
T Consensus 173 ~~~~~~~h~~~-v~~v-~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~-~~~-~~~~~~~~v~~v~~sp~-~~~~la~g~~ 247 (357)
T 4g56_B 173 VLKSYNAHSSE-VNCV-AACPGKDTIFLSCGEDGRILLWDTRKPKPA-TRI-DFCASDTIPTSVTWHPE-KDDTFACGDE 247 (357)
T ss_dssp EEEEECCCSSC-EEEE-EECTTCSSCEEEEETTSCEEECCTTSSSCB-CBC-CCTTCCSCEEEEEECTT-STTEEEEEES
T ss_pred EEEEECCCCCC-EEEE-EECCCCCCEEEEECCCCCEEEEECCCCCEE-EEE-EECCCCCCCCCHHHHHC-CCCEEEEEEC
T ss_conf 99998277897-8899-983688722665505786388788999640-123-30023344421111213-5305998213
Q ss_pred CCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCC-CEEEEEECCCCEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEE
Q ss_conf 99299996789972179991579985899992799-98999968991999957993478982557864445678749999
Q 000681 1255 AGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHA-PIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLT 1333 (1354)
Q Consensus 1255 DG~I~IWDi~~~~~~i~~l~~h~~~ItsLafspdg-~~Lasgs~Dg~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLa 1333 (1354)
|+.|++||++++ .++..+.+|...|++++|+|++ .+|++|+.|+.|+|||.+...+..... |. +.|++++
T Consensus 248 d~~i~~wd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~-H~-------~~V~~va 318 (357)
T 4g56_B 248 TGNVSLVNIKNP-DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLS-HR-------DFVTGVA 318 (357)
T ss_dssp SSCEEEEESSCG-GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECC-CS-------SCEEEEE
T ss_pred CCCEEEEECCCC-CEEEEEECCCEEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCEEEECC-CC-------CCEEEEE
T ss_conf 542068989999-58289935531387799768999899999589979999899995869788-99-------9889999
Q ss_pred EEC-CCCEEEEEECCCEEEECC
Q ss_conf 944-997999998898099919
Q 000681 1334 FHP-YQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1334 fsp-dg~~Lasgs~Dg~I~IWd 1354 (1354)
|+| ++.+|++++.||.|++|+
T Consensus 319 fsP~d~~~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 319 WSPLDHSKFTTVGWDHKVLHHH 340 (357)
T ss_dssp ECSSSTTEEEEEETTSCEEEEE
T ss_pred EECCCCCEEEEECCCCEEEEEE
T ss_conf 9589999999991899599997
No 9
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=1.00 E-value=1 Score=297.11 Aligned_cols=286 Identities=12% Similarity=0.181 Sum_probs=246.5
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCC
Q ss_conf 99837999958999999997899499998799936789627999999869999986089989999968980999986677
Q 000681 1041 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1120 (1354)
Q Consensus 1041 ~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs~DG~IrIWdl~~~ 1120 (1354)
...|++++|+|++.+|++|+.|+.|++||..+++....+..|. ..|.++.| ++++.++++++.|+.+++|++...
T Consensus 64 ~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~---~~v~~~~~--sp~g~~lasg~~d~~i~v~~~~~~ 138 (354)
T 2pbi_B 64 GNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPC---TWVMACAY--APSGCAIACGGLDNKCSVYPLTFD 138 (354)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS---SCCCEEEE--CTTSSEEEEESTTSEEEEEECCCC
T ss_pred CCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEECCC---CCEEEEEE--CCCCCEEEEEECCCCEEEEEEECC
T ss_conf 9808899998999989999289829999899987535774278---87799999--899997997138998899997425
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECC--CC
Q ss_conf 7850488401024589997112503799935999499997898199998888851345424999998279999749--99
Q 000681 1121 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV--HG 1198 (1354)
Q Consensus 1121 ~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsI~~~s~--~g 1198 (1354)
.... .......+.+|...+.+ +.|++++..+++++.|+.|++||+++++ ++..+.+|... |.++. +.+ ++
T Consensus 139 ~~~~-~~~~~~~~~~h~~~v~~----~~~~~~~~~l~t~s~D~~v~lwd~~~~~-~~~~~~~h~~~-v~~~~-~~~~~~g 210 (354)
T 2pbi_B 139 KNEN-MAAKKKSVAMHTNYLSA----CSFTNSDMQILTASGDGTCALWDVESGQ-LLQSFHGHGAD-VLCLD-LAPSETG 210 (354)
T ss_dssp TTCC-SGGGCEEEEECSSCEEE----EEECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECCSSC-EEEEE-ECCCSSC
T ss_pred CCCC-CCCCCEEEECCCCCEEE----EEEECCCCEEEEEECCCCEEEEECCCCE-EEEEECCCCCC-EEEEE-EEECCCC
T ss_conf 6655-33331163066784789----9996899999999189958997677781-99999278998-69999-8757999
Q ss_pred CEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEECC--
Q ss_conf 999999889909999877997226741678878888599999229999999999779929999678997217999157--
Q 000681 1199 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH-- 1276 (1354)
Q Consensus 1199 ~~Lvsgs~DGsIrIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp~~~g~~Lvsgs~DG~I~IWDi~~~~~~i~~l~~h-- 1276 (1354)
+.+++|+.||.|++||+++++ ....+ .+|...|.+++|+|+ +..|++|+.|+.|++||++.. ..+..+..+
T Consensus 211 ~~l~sgs~Dg~v~~wd~~~~~-~~~~~---~~h~~~v~~v~~~p~--~~~l~s~s~D~~v~lwd~~~~-~~~~~~~~~~~ 283 (354)
T 2pbi_B 211 NTFVSGGCDKKAMVWDMRSGQ-CVQAF---ETHESDVNSVRYYPS--GDAFASGSDDATCRLYDLRAD-REVAIYSKESI 283 (354)
T ss_dssp CEEEEEETTSCEEEEETTTCC-EEEEE---CCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTT-EEEEEECCTTC
T ss_pred CEEEEEECCCEEEEEECCCCC-EEEEE---CCCCCCEEEEEEECC--CCEEEEEECCCEEEEEECCCC-CEEEEECCCCC
T ss_conf 999999479959999888992-77983---588788179999589--998999969981999988899-67888747874
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEEC-CCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEECC
Q ss_conf 998589999279998999968991999957-993478982557864445678749999944997999998898099919
Q 000681 1277 RGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1277 ~~~ItsLafspdg~~Lasgs~Dg~I~Iwd~-~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~I~IWd 1354 (1354)
...+++++|+|++.++++|+.|+.|++||. ++..+..+.. |. +.|++++|+|++.+|++|+.|+.|++|+
T Consensus 284 ~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~-h~-------~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 284 IFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFG-HE-------NRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECC-CS-------SCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEEC-CC-------CCEEEEEECCCCCEEEEECCCCCEEECC
T ss_conf 03455999947999999997899299998988955779987-89-------9578999989999999982888889619
No 10
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=297.07 Aligned_cols=280 Identities=19% Similarity=0.325 Sum_probs=246.5
Q ss_pred CCCEEEEEECCC----CCEEEEEECCCCEEEEECCCCCE--EEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEE
Q ss_conf 998379999589----99999997899499998799936--789627999999869999986089989999968980999
Q 000681 1041 EKGTKTALLQPF----SPIVVAADENERIKIWNYEEDTL--LNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1114 (1354)
Q Consensus 1041 ~~~I~sL~fspd----g~~Latgs~Dg~I~IWd~~tg~~--l~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs~DG~IrI 1114 (1354)
...|.+++|+++ +.+|++|+.|+.|++|++.+++. ...+.+|. ..|.++.| ++++.++++++.||.|++
T Consensus 32 ~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~---~~v~~~~~--~~~~~~l~s~s~D~~i~l 106 (321)
T 3ow8_A 32 DDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQ---LGVVSVDI--SHTLPIAASSSLDAHIRL 106 (321)
T ss_dssp SSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCS---SCEEEEEE--CSSSSEEEEEETTSEEEE
T ss_pred CCCEEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCEEEEEEECCCC---CCEEEEEE--CCCCCEEEEEECCCCEEE
T ss_conf 8967999982488888888999849998999889899743666005677---88899998--899998999937980999
Q ss_pred EECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEE
Q ss_conf 98667778504884010245899971125037999359994999978981999988888513454249999982799997
Q 000681 1115 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1194 (1354)
Q Consensus 1115 Wdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsI~~~ 1194 (1354)
||+.+ ++. + ..+..+...+.+ ++|+|++..+++++.||.|++||++++. ....+..+... |.++ .+
T Consensus 107 Wd~~~--~~~--~---~~~~~~~~~~~~----~~~spdg~~l~~g~~dg~v~i~~~~~~~-~~~~~~~~~~~-v~~~-~~ 172 (321)
T 3ow8_A 107 WDLEN--GKQ--I---KSIDAGPVDAWT----LAFSPDSQYLATGTHVGKVNIFGVESGK-KEYSLDTRGKF-ILSI-AY 172 (321)
T ss_dssp EETTT--TEE--E---EEEECCTTCCCC----EEECTTSSEEEEECTTSEEEEEETTTCS-EEEEEECSSSC-EEEE-EE
T ss_pred EECCC--CCE--E---EEEECCCCCEEE----EEECCCCCEEEEECCCCCEEEEECCCCC-EEEEECCCCCE-EEEE-EE
T ss_conf 97899--979--8---999379856799----9999999989998389919999867994-66774389942-9999-99
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEE
Q ss_conf 49999999998899099998779972267416788788885999992299999999997799299996789972179991
Q 000681 1195 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID 1274 (1354)
Q Consensus 1195 s~~g~~Lvsgs~DGsIrIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp~~~g~~Lvsgs~DG~I~IWDi~~~~~~i~~l~ 1274 (1354)
+++++++++|+.||.|++||+++++ ....+. +|...|.+++|+|+ +.+|++|+.||.|++||++.+ .....+.
T Consensus 173 spdg~~lasg~~dg~i~iwd~~~~~-~~~~~~---~h~~~v~~l~~spd--~~~l~s~s~dg~i~iwd~~~~-~~~~~~~ 245 (321)
T 3ow8_A 173 SPDGKYLASGAIDGIINIFDIATGK-LLHTLE---GHAMPIRSLTFSPD--SQLLVTASDDGYIKIYDVQHA-NLAGTLS 245 (321)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTE-EEEEEC---CCSSCCCEEEECTT--SCEEEEECTTSCEEEEETTTC-CEEEEEC
T ss_pred CCCCCEEEEECCCCEEEEEECCCCC-EEEEEC---CCCCCEEEEEECCC--CCEEEEECCCCEEEEEECCCC-CEEEEEC
T ss_conf 8999999999289839999999990-999980---25896018999489--998999909980999878996-3258986
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEEC-CCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEC
Q ss_conf 57998589999279998999968991999957-99347898255786444567874999994499799999889809991
Q 000681 1275 AHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1353 (1354)
Q Consensus 1275 ~h~~~ItsLafspdg~~Lasgs~Dg~I~Iwd~-~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~I~IW 1353 (1354)
+|...|.+++|+|++.+|++++.|+.|++||+ +++.+..+.. |. +.|.+++|+|++.+|++++.||.|++|
T Consensus 246 ~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-h~-------~~v~~v~~s~~g~~l~s~~~d~~i~vw 317 (321)
T 3ow8_A 246 GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFD-HQ-------DQVWGVKYNGNGSKIVSVGDDQEIHIY 317 (321)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CS-------SCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECC-CC-------CCEEEEEECCCCCEEEEEECCCEEEEE
T ss_conf 8888268999979999899981898099994999888889837-87-------738999998999999997589808999
Q ss_pred C
Q ss_conf 9
Q 000681 1354 S 1354 (1354)
Q Consensus 1354 d 1354 (1354)
|
T Consensus 318 d 318 (321)
T 3ow8_A 318 D 318 (321)
T ss_dssp E
T ss_pred E
T ss_conf 5
Done!