Query 000682
Match_columns 1353
No_of_seqs 388 out of 641
Neff 4.7
Searched_HMMs 46136
Date Mon Apr 1 21:52:05 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000682.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000682hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5602 SIN3 Histone deacetyla 100.0 3E-143 6E-148 1264.8 54.2 824 69-1295 119-1011(1163)
2 smart00761 HDAC_interact Histo 100.0 2.2E-43 4.7E-48 338.2 7.0 100 494-593 1-101 (102)
3 PF08295 Sin3_corepress: Sin3 100.0 1.6E-41 3.5E-46 326.9 7.7 100 494-593 1-100 (101)
4 KOG4204 Histone deacetylase co 100.0 7.3E-39 1.6E-43 349.1 18.3 158 75-232 16-197 (231)
5 KOG4204 Histone deacetylase co 99.8 3.6E-19 7.8E-24 195.2 16.5 177 157-429 14-192 (231)
6 COG5602 SIN3 Histone deacetyla 99.8 2.9E-18 6.4E-23 206.4 17.6 210 157-429 123-334 (1163)
7 PF02671 PAH: Paired amphipath 99.3 1.3E-12 2.8E-17 110.4 5.5 47 96-142 1-47 (47)
8 PF02671 PAH: Paired amphipath 99.2 1.4E-11 2.9E-16 104.2 5.7 47 180-226 1-47 (47)
9 PTZ00146 fibrillarin; Provisio 93.7 0.1 2.2E-06 60.6 6.1 8 485-492 265-272 (293)
10 KOG0921 Dosage compensation co 92.6 0.1 2.2E-06 67.0 4.0 8 26-33 1206-1213(1282)
11 PLN03138 Protein TOC75; Provis 89.5 0.37 7.9E-06 62.5 4.7 30 382-413 282-311 (796)
12 PLN03138 Protein TOC75; Provis 89.0 0.38 8.1E-06 62.4 4.4 13 721-733 489-501 (796)
13 KOG3915 Transcription regulato 88.7 0.41 8.9E-06 57.6 4.0 12 179-190 200-211 (641)
14 PHA00370 III attachment protei 86.8 1.4 2.9E-05 50.1 6.3 13 81-93 148-160 (297)
15 KOG3915 Transcription regulato 86.4 0.43 9.3E-06 57.4 2.4 8 220-227 260-267 (641)
16 PHA00370 III attachment protei 81.8 1.6 3.5E-05 49.5 4.3 10 125-134 217-226 (297)
17 PF02084 Bindin: Bindin; Inte 79.1 21 0.00045 40.5 11.5 8 85-92 106-113 (238)
18 PF04285 DUF444: Protein of un 77.0 4.1 8.9E-05 49.9 6.0 15 198-212 185-199 (421)
19 PRK06958 single-stranded DNA-b 75.9 4.1 8.9E-05 44.7 5.1 6 23-28 110-115 (182)
20 cd07354 HN_L-delphilin-R1_like 75.5 10 0.00022 36.6 6.9 69 79-148 3-73 (80)
21 PF13865 FoP_duplication: C-te 74.3 8.6 0.00019 36.4 6.1 27 73-99 37-67 (74)
22 COG4371 Predicted membrane pro 71.9 8.2 0.00018 44.1 6.3 16 118-133 181-196 (334)
23 KOG3074 Transcriptional regula 70.8 1.2 2.5E-05 50.1 -0.5 14 73-86 27-40 (263)
24 cd07354 HN_L-delphilin-R1_like 69.5 14 0.0003 35.8 6.2 68 163-231 3-72 (80)
25 PF11867 DUF3387: Domain of un 63.6 33 0.00071 40.8 9.5 99 114-212 117-229 (335)
26 PTZ00009 heat shock 70 kDa pro 60.3 7.4 0.00016 50.2 3.6 21 54-74 627-647 (653)
27 PTZ00009 heat shock 70 kDa pro 59.8 7.6 0.00016 50.1 3.6 32 38-69 615-646 (653)
28 PTZ00110 helicase; Provisional 57.6 21 0.00046 45.1 6.9 11 729-739 486-496 (545)
29 PF05387 Chorion_3: Chorion fa 56.7 12 0.00025 42.6 3.9 17 78-94 70-86 (277)
30 COG4174 ABC-type uncharacteriz 55.7 28 0.00061 40.5 6.7 29 83-111 83-111 (364)
31 PF07655 Secretin_N_2: Secreti 54.8 15 0.00032 36.4 3.9 34 60-93 47-80 (98)
32 KOG1308 Hsp70-interacting prot 54.3 35 0.00077 41.0 7.4 35 95-130 336-376 (377)
33 KOG1596 Fibrillarin and relate 52.7 25 0.00055 40.5 5.7 14 484-497 288-301 (317)
34 PF05642 Sporozoite_P67: Sporo 51.8 21 0.00046 44.9 5.3 11 403-413 371-381 (727)
35 COG4371 Predicted membrane pro 49.6 24 0.00051 40.6 4.8 15 201-215 180-194 (334)
36 PRK05325 hypothetical protein; 47.3 19 0.00042 44.0 4.1 17 161-177 146-162 (401)
37 KOG3074 Transcriptional regula 45.7 12 0.00026 42.5 1.8 10 184-193 71-80 (263)
38 PRK04537 ATP-dependent RNA hel 45.4 36 0.00077 43.5 6.2 10 371-380 556-565 (572)
39 PF12174 RST: RCD1-SRO-TAF4 (R 41.5 64 0.0014 30.5 5.6 45 371-415 13-57 (70)
40 KOG0105 Alternative splicing f 41.4 23 0.00051 39.1 3.1 7 101-107 131-137 (241)
41 TIGR02877 spore_yhbH sporulati 39.1 32 0.00069 41.8 4.1 31 387-427 317-347 (371)
42 KOG0775 Transcription factor S 37.8 1.2E+02 0.0026 35.7 8.0 32 76-107 57-90 (304)
43 PF07466 DUF1517: Protein of u 37.0 63 0.0014 38.1 6.0 19 199-217 138-156 (289)
44 PF09060 L27_N: L27_N; InterP 35.4 37 0.00081 30.0 2.8 26 1224-1250 2-27 (49)
45 KOG3543 Ca2+-dependent activat 35.0 2.5E+02 0.0054 36.3 10.6 49 101-149 66-115 (1218)
46 KOG4462 WASP-interacting prote 34.3 46 0.001 39.9 4.3 13 7-19 37-49 (437)
47 KOG1924 RhoA GTPase effector D 31.4 91 0.002 41.0 6.4 18 680-697 969-986 (1102)
48 PF05642 Sporozoite_P67: Sporo 31.3 96 0.0021 39.5 6.4 7 374-380 363-369 (727)
49 PRK05325 hypothetical protein; 31.1 44 0.00096 41.1 3.6 11 387-397 338-348 (401)
50 PF04147 Nop14: Nop14-like fam 30.6 1.6E+02 0.0034 39.7 8.8 41 1153-1199 443-483 (840)
51 KOG3304 Surfeit family protein 30.5 73 0.0016 33.6 4.4 34 79-112 15-49 (148)
52 PF04931 DNA_pol_phi: DNA poly 30.4 33 0.00071 45.4 2.6 27 83-111 25-51 (784)
53 PF08349 DUF1722: Protein of u 28.9 1.1E+02 0.0025 31.1 5.6 49 370-418 56-104 (117)
54 KOG3570 MAPK-activating protei 28.4 52 0.0011 43.4 3.7 37 640-676 903-940 (1588)
55 cd07347 harmonin_N_like N-term 26.2 2.1E+02 0.0045 27.9 6.4 59 370-429 6-66 (78)
56 KOG0037 Ca2+-binding protein, 25.8 67 0.0015 36.5 3.6 28 94-122 55-82 (221)
57 KOG1456 Heterogeneous nuclear 25.0 57 0.0012 39.5 3.0 20 131-150 46-65 (494)
58 PF04094 DUF390: Protein of un 24.2 1.2E+02 0.0025 39.8 5.5 6 130-135 197-202 (828)
59 PF07462 MSP1_C: Merozoite sur 24.2 1.3E+02 0.0029 38.2 6.0 6 186-191 417-422 (574)
60 KOG1456 Heterogeneous nuclear 23.8 69 0.0015 38.8 3.3 13 401-413 360-372 (494)
61 PRK09807 hypothetical protein; 23.5 73 0.0016 32.6 3.0 52 89-140 3-66 (161)
62 KOG3262 H/ACA small nucleolar 23.5 1.1E+02 0.0023 34.2 4.4 17 214-230 128-144 (215)
63 KOG2141 Protein involved in hi 23.3 84 0.0018 41.1 4.1 14 1120-1133 293-306 (822)
64 KOG0037 Ca2+-binding protein, 23.1 84 0.0018 35.8 3.7 16 161-176 115-130 (221)
65 PF04228 Zn_peptidase: Putativ 21.9 43 0.00094 39.5 1.3 26 43-68 16-41 (292)
66 KOG3590 Protein kinase A ancho 21.7 1.6E+02 0.0034 36.4 5.7 16 90-105 116-131 (602)
67 PF04285 DUF444: Protein of un 21.7 1.5E+02 0.0032 36.9 5.7 16 161-176 162-177 (421)
68 PF14775 NYD-SP28_assoc: Sperm 21.5 1.6E+02 0.0035 27.1 4.6 56 372-427 2-60 (60)
69 PF12083 DUF3560: Domain of un 21.3 3E+02 0.0066 29.0 7.0 65 591-655 41-118 (126)
70 KOG1924 RhoA GTPase effector D 20.6 2.6E+02 0.0056 37.3 7.4 7 372-378 807-813 (1102)
71 TIGR02877 spore_yhbH sporulati 20.5 1E+02 0.0022 37.7 3.9 14 163-176 160-173 (371)
72 PF08963 DUF1878: Protein of u 20.4 1.1E+02 0.0023 31.7 3.5 63 366-428 43-110 (113)
73 KOG4098 Molecular chaperone Pr 20.1 1.9E+02 0.004 30.8 5.1 50 605-654 61-117 (140)
No 1
>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=100.00 E-value=2.6e-143 Score=1264.82 Aligned_cols=824 Identities=30% Similarity=0.463 Sum_probs=607.1
Q ss_pred CCCCCcccccchhhHHHHHHHHHhccChHHHHHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhhhhcCCcccccc
Q 000682 69 GMGTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEIT 148 (1353)
Q Consensus 69 g~~~~~~l~~~dAl~YL~~VK~~F~d~p~vY~eFL~IMkdfk~~rid~~gVi~rV~~LFkghpdLI~GFN~FLP~gy~I~ 148 (1353)
.....++|+|+|||+||++||.+|..+|++|+.||+||||||++.||++|||+||+.||+|+|+||+|||+|||.||+|+
T Consensus 119 ~~~~~r~Ldv~DAlsyLe~vK~~f~~rp~iYn~FLdiMkdFKsqaiDtpgVI~RVS~LFrgYP~LIegFNtFLPsgYkie 198 (1163)
T COG5602 119 PRIPYRPLDVSDALSYLEKVKEQFSNRPEIYNNFLDIMKDFKSQAIDTPGVIERVSVLFRGYPHLIEGFNTFLPSGYKIE 198 (1163)
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHcCChHHHHHHhhhCCCccEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCC--------------------------------------------CC-------------CCCcchhHHHHHHHHH
Q 000682 149 LDEDE--------------------------------------------AP-------------PKKTVEFEEAITFVNK 171 (1353)
Q Consensus 149 l~~de--------------------------------------------qP-------------p~~~vef~~Ai~FVnK 171 (1353)
++.+. || ++..++|++||.|||+
T Consensus 199 ~S~~~~~~s~l~vtTP~gp~s~~pv~ss~y~a~~n~~qrts~p~lps~~Q~e~s~~~~~~sd~~~~~~~d~nqAI~~vnk 278 (1163)
T COG5602 199 GSLPQPNGSRLHVTTPQGPLSSPPVQSSYYVAPCNHDQRTSHPTLPSDSQPEPSAPSHMPSDARGKHQVDFNQAIIFVNK 278 (1163)
T ss_pred EecCCCCCCeeeecCCCCCCCCCCcccccccccccccccccCCCCccccCCCCCCcccCCcccccccceehhHHHHHHHH
Confidence 75210 10 0233679999999999
Q ss_pred HHhhcCCChhhHHHHHHHHHHHhhcCCcHHHHHHHHHHhhccChhHHHHHhhhCCCCCCCccC--CCcccccCCcccCCC
Q 000682 172 IKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLS--HNIPFVRNSTQRGNE 249 (1353)
Q Consensus 172 IK~RF~~dPevYk~FLeIL~~y~~~~ksi~eVy~qVa~LFkghPDLLeEF~~FLP~~~~~~~~--~n~~~~~~~~~~~~~ 249 (1353)
||.||.++|+.|..||++|+.|++.+++|++||.+|+.||+++|||+++|..|||+....+.+ .++..+
T Consensus 279 VK~r~~~~pe~y~~fl~~Lrtyq~~qr~i~ev~~~Vt~lfa~~PdLleeFk~FLPd~~~~a~q~~a~aq~p--------- 349 (1163)
T COG5602 279 VKVRFQNNPEMYYDFLDSLRTYQMKQRSIQEVYARVTKLFAEAPDLLEEFKEFLPDSSVSAEQSTANAQKP--------- 349 (1163)
T ss_pred HHHhcCCCchhHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhChHHHHHHHHhCccccccccccccccCCC---------
Confidence 999999999999999999999999999999999999999999999999999999998654421 111110
Q ss_pred CCCCCCCccchhhhhhhccccccccCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhhhhcccCCCCccchhccccCccc
Q 000682 250 RSAGIPPLRQMQMDKHRRRDRIATSHADRDLSVDRPEMDDEKLMIKMQKEQRRRAEKENRDRRNRDQDDREIEHDNNRDF 329 (1353)
Q Consensus 250 r~~~~P~~~~~~~~K~~~~~r~~~s~~~~~~s~~~p~~~~~~~~~~~~keqr~~~~k~~~~r~~~~~~~~~~~~~~~~~~ 329 (1353)
...+|+.......+.. +.++.+++. ...|.. . .+..+ .+. +...++
T Consensus 350 -~~~lPPiG~Fs~p~~a-~~~~~ps~~-----~~~p~~-----~-----------~~~~~---~r~--------d~~~S~ 395 (1163)
T COG5602 350 -SKRLPPIGSFSLPTAA-PEQNRPSLL-----WESPRS-----I-----------SNISR---YRA--------DLLTSF 395 (1163)
T ss_pred -cccCCCCCCCCCCCcc-cccCChHHh-----hcCcch-----h-----------ccccc---ccc--------chhhhh
Confidence 1122322221111100 000000000 000000 0 00000 000 000000
Q ss_pred ccccCCCCccccccccCcCCCCCCCccCchhhhhhhhcchhhhHHHHHhhcC-hHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 000682 330 NLQRFPDKKKSIKKVEGFGANSSLASYDDKDALKSIYNQGFIFCDKVKEKLC-SDDYQAFLKCLHIYSNGIIKRNDLQNL 408 (1353)
Q Consensus 330 ~~q~~~~k~k~~~~~~~~~~~p~~~~~~~~~~~k~~~~eEl~FFDKVKk~L~-~~~Y~EFLKcLNLYsQeII~r~ELv~l 408 (1353)
..+-.|.+. . .|.+. ..++.-.||++||.+|. +..|+|||||||||+|+||++++||++
T Consensus 396 s~~~~P~~~---------~-~P~s~----------~~~~se~ffe~ikq~L~~~~~y~eFLKlLnLY~Q~iiDk~~Lver 455 (1163)
T COG5602 396 SRNFVPIRI---------H-MPISH----------LSNESEDFFERIKQYLKDKNLYHEFLKLLNLYSQKIIDKNDLVER 455 (1163)
T ss_pred hhhcCCccc---------c-CCccc----------cCCchHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 011111100 0 11110 01122279999999999 999999999999999999999999999
Q ss_pred HHHHhccChHHHHHHhhhhccccccccccccccccccccCCCCCCcccccccchhhhhhhhhHhHhhhhhhhhhhhcccc
Q 000682 409 VTDLLGKYMDLMDEFNHFFERCENIDGFLAGVMSKKSLCNDGHVSRSVKIEDKDREHKREMEVTKEKDRYKEKYYAKSIQ 488 (1353)
Q Consensus 409 V~~fLG~~pDLm~~Fk~FLg~~e~~~g~l~g~~s~~sl~~~g~~~~~~~~e~~dr~~~~e~~~~kerdr~~ek~~~kp~~ 488 (1353)
+-.|||.+.+||.|||.|++|.+... .| + +..
T Consensus 456 ~~~~L~sNe~L~~wFk~fi~y~~~~~-------------------~~--~---------------------------~~~ 487 (1163)
T COG5602 456 LFAFLGSNEELIRWFKAFINYSEPEK-------------------EP--L---------------------------RET 487 (1163)
T ss_pred HHHHhcCcHHHHHHHHHHhccCCCCC-------------------CC--c---------------------------ccc
Confidence 99999999999999999999865210 00 0 011
Q ss_pred ccccCCCcccCCccccCCCCCCCCCCCCccccccccccCeeeec-ccCCCCcccchhccchhhHHHhhcccchhhHHHHH
Q 000682 489 ELDLSNCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSV-TSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLL 567 (1353)
Q Consensus 489 elDls~C~r~gPSYRlLPk~~~~~~CSgR~eLc~sVLND~WVS~-t~~SED~sF~~~RKNqYEE~LfRcEDERfElDm~I 567 (1353)
..||+.|+.||||||+||+++...+|||||+|||+||||.|||| ||+|||++|++||||||||+|||+||||||||.+|
T Consensus 488 ~~~le~~~~~GpSYR~LP~~e~~i~CSGRDDl~w~VLND~wVs~Pt~aSEdSgfI~hrkNqyEEaL~kiEeERyEyDr~I 567 (1163)
T COG5602 488 RKDLEKFEKCGPSYRLLPKSEEEIKCSGRDDLAWEVLNDDWVSHPTWASEDSGFIAHRKNQYEEALFKIEEERYEYDRHI 567 (1163)
T ss_pred ccCHhHhhhhCcchhcCCchhhhCCccCcchhhHhhhccccccCCCcccccccceeecccHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccCCCCcccccc----hhHHHHHHHHhhC-CCHHHHHHHHHhCcCcchhHHHHHHHHH
Q 000682 568 ESVSSTAKRAEELLNSINENKITLETPFHLKDHF----SALNLRCIERLYG-DHGLDVMDILRKNPAIALPVMLTRLKQK 642 (1353)
Q Consensus 568 E~~~~TI~~LE~l~~ki~~~~~e~~~~~~L~~~L----~~I~~R~I~rIYG-d~g~eVid~L~knP~~AlPVVL~RLKQK 642 (1353)
|++.+||+.|+.++++|..|...++..+.|.++| .+||+++|++||| +||.+||++|+++|++|+||||+|||+|
T Consensus 568 ea~~~~Ik~Le~i~d~~~~~~e~Eka~~~Lp~glg~~S~sIyKkvik~VY~KEhA~eile~L~k~P~vt~PiVlkRLk~K 647 (1163)
T COG5602 568 EATQRTIKALEQIIDKIKDMEESEKANKTLPGGLGLPSKSIYKKVIKKVYDKEHAPEILEALLKKPHVTIPIVLKRLKMK 647 (1163)
T ss_pred HHHHHHHHHHHHHHHHhhcchhhHHHHhcCCCcCCCccHHHHHHHHHHHhchhhHHHHHHHHHhCCCcchHHHHHHHHHh
Confidence 9999999999999999999998888888888766 5899999999999 7999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhhhhccccccchhhhhhccccchHHHHHHHHHHHhhhccchhHHHhhhCCCCCCCCCc
Q 000682 643 QEEWTKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKQFKENKQTEDDVLFVIAAGHRQPVIPHL 722 (1353)
Q Consensus 643 ~eEWr~aq~e~nKvWrev~~KNY~KSLDHqs~~FKq~DkK~ls~K~Lv~EIe~i~eeq~~edd~l~~~a~g~~~~~~P~l 722 (1353)
++|||+|+|+|||+||+|.+|||+|||||||++||+.|||.||+|.||.||+.++.++..- ++ +....-|+
T Consensus 648 d~EWR~~kRew~kiWReIEeKN~~ksLD~~g~sfK~rDKk~lstk~il~eidd~~q~kih~---~~------~~k~~fqf 718 (1163)
T COG5602 648 DEEWRSCKREWNKIWREIEEKNYHKSLDHQGVSFKSRDKKILSTKNILEEIDDRSQAKIHV---SI------DDKKVFQF 718 (1163)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHhhhhhcccceeccccccchHHHHHHHhhHhhhcceee---ec------Ccccccee
Confidence 9999999999999999999999999999999999999999999999999999766543211 00 11223488
Q ss_pred eeecCChhHHHHHHHHHHHhhhccc-CCHHHHHHHHHHHHHhhhccCCCCCCCCCCcchhhhhcccCCCCCCCCCCcccc
Q 000682 723 EYGYSDSNIHEDLYKLVQYSCEEMC-STKDQLNKAMKLWTTFLEPMLSVPSRPSDVEGAEDAGKARHSGKNNSASSMVES 801 (1353)
Q Consensus 723 ~f~y~D~~I~~D~~~Li~~~~~~~~-~s~e~~~kv~~~~~~Fv~~ff~i~~r~~~~e~~ed~~~~~~~~~~~~~~~~~~~ 801 (1353)
.|.|+|.-|+.|++.|..-....+. -+..+++++..++..||.+||++-. ...+..+-.... +.+.- -+++
T Consensus 719 ~fvlcd~~If~nil~l~dt~itn~ssyl~~dkerlka~lk~~~slff~~~~-----~~i~~~~y~~~~-nv~~~--ni~g 790 (1163)
T COG5602 719 VFVLCDTYIFVNILDLKDTLITNMSSYLESDKERLKANLKTIVSLFFLLCI-----FRIIIIVYERLL-NVKGL--NIDG 790 (1163)
T ss_pred eeecccceeEeeeccccceeeecchhhhhhhHHHHHHHHHHHHHHHhhhhh-----hhhhhhhhhhhc-ccccc--ccCC
Confidence 8999999999999999864433222 2347789999999999999999542 111111111110 00000 0000
Q ss_pred CCCCCCCCCccCCCCCCCCCCCCCCcccccccccccccCCCccccccccccccccccccchhhhhhhhhhccccccCccc
Q 000682 802 DGSPGPDGTVNSRQPISSGNGDENTSTELNNLCRTALSNGDTITKENVLDSDRVYRDDLSCSALQLEKEQKNVDISDKRS 881 (1353)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 881 (1353)
+. ++|..++ .+.+|
T Consensus 791 ----------------------------------------~k--------~~r~srs---~~~~q--------------- 804 (1163)
T COG5602 791 ----------------------------------------LK--------ADRSSRS---DESAQ--------------- 804 (1163)
T ss_pred ----------------------------------------cc--------ccccccc---chhhh---------------
Confidence 00 0000000 00000
Q ss_pred cchhhhhccccccCCCCCCccccccCCCCCCcccccCCCCCCCccccccccccCCCCCCCCCcccCCCCCccccccCccc
Q 000682 882 GIIIQVAVGERVANSDASPAIGAENSHGRTGSEMMSASLRPCDAAKDDLKHEANVNPVPPSEVTQGCDLAKPTLLENGAL 961 (1353)
Q Consensus 882 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 961 (1353)
-. ..+++ .+++- ++
T Consensus 805 -----~~---s~vks-----------------------------------------gn~~q-----------vs------ 818 (1163)
T COG5602 805 -----RY---SKVKS-----------------------------------------GNLEQ-----------VS------ 818 (1163)
T ss_pred -----hH---HHhhc-----------------------------------------ccchh-----------cc------
Confidence 00 00000 00000 00
Q ss_pred ccCcccccccccCCCCCcccccccccCCCCCccccccccccccccccccccCCCcccccccccccccccccccCCCCCCC
Q 000682 962 RDGAKGINYHEKSVGPTKIEKEEGELSPNGDFEEDNFGVYGDAAVKTLPKAKHGVESRQYQSKNEKGLQHQVVGGENDAD 1041 (1353)
Q Consensus 962 ~~~~~~~~~~~~~~~~~~~e~eegelsp~~d~e~~nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1353)
+. +++++ +
T Consensus 819 -----------------~q--~de~a-----i------------------------------------------------ 826 (1163)
T COG5602 819 -----------------KQ--IDEYA-----I------------------------------------------------ 826 (1163)
T ss_pred -----------------cC--CchhH-----H------------------------------------------------
Confidence 00 00000 0
Q ss_pred CCCCCCCCccccCCCCCCCCcCCCCCChhhhhhhhcccccccCCccccccccccccccccCCCCCCCCCchhhhcccccc
Q 000682 1042 ADDEDSGNASVAGDDASGSESAGDEYSREEHEEEEDVERDDVDGKAESEGEADGMADQHFVGGDCMSLPMSERFLLSVKP 1121 (1353)
Q Consensus 1042 ~ddeds~n~se~g~~~s~ses~~~e~s~e~~eee~~~~~~~~d~kaesegeaeg~~~~~~~~~d~~~l~~se~~~~~~kp 1121 (1353)
+|| . -+ ...| .|..+.++-.|++. -+
T Consensus 827 -ede-------~---k~-----p~hp--------------------------d~l~eh~~skgi~e----ne-------- 852 (1163)
T COG5602 827 -EDE-------I---KE-----PTHP--------------------------DGLKEHNISKGISE----NE-------- 852 (1163)
T ss_pred -HHH-------h---cC-----CCCC--------------------------chHHHhhhhhccch----hh--------
Confidence 000 0 00 0000 00000000011110 00
Q ss_pred cccccCCcccccccccceeecccchhhHHHHHHHHHHHHHHHHHhchhhhhcccCCCCCCchHHHHHHHHHHHHhhcCCC
Q 000682 1122 LAKFVPATSVEERKDCRVFYGNDDFYVLFRLHQTLYERIQWAKMNTTGAEMKRRTSKEASCSDLYARFMTALYNLLDGSI 1201 (1353)
Q Consensus 1122 la~~~~~~~~~~~~~~~~FygN~~~YvFfRLhqiLYeRL~~~K~~s~~~e~~~k~~~d~~~~~~Y~~fL~~l~~LldG~i 1201 (1353)
++ -...+||||.+.||||||+..+||||+.+|.......+- .....-|...|.++++|+.|.+
T Consensus 853 --k~---------~i~~~~fgns~myvffrl~~~~yerLyeik~~~e~vti~------~~~~g~Yen~l~~s~rli~g~l 915 (1163)
T COG5602 853 --KQ---------VIALTEFGNSLMYVFFRLRFDSYERLYEIKKIKEAVTIG------MMEPGHYENELWDSYRLIFGAL 915 (1163)
T ss_pred --HH---------HHHHhhcccceeeeehhhhHhHHHHHHHHHHHHHHhhhh------hcccchhhhHHHHHHHHHhccc
Confidence 11 112369999999999999999999999999765444321 1223489999999999999999
Q ss_pred cchhhHHHHHhhhcCcceeeeeHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCCCCcc-cHHHHHHHHHhc-CCCC
Q 000682 1202 DNAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLYEYEESRKPGKQI-DSVYYENARVLL-HEEN 1279 (1353)
Q Consensus 1202 D~~~FED~~R~~fG~~aY~lFTlDKLI~~lvKqlq~i~sDe~~~ell~Ly~~Er~r~~~~~~-d~~Yr~~Ae~ll-~DeN 1279 (1353)
+..+||+.+|.++++++|++||||||.+.|+||+|+++.|-+...++.||...+....++.+ +++||..+|.+| .||+
T Consensus 916 ~~~efekylr~fynntcykiytidrl~qsl~kq~h~i~~d~Ky~~~~~lfe~nsaaS~k~~~dq~~yrl~ves~l~p~e~ 995 (1163)
T COG5602 916 TPCEFEKYLRPFYNNTCYKIYTIDRLRQSLKKQLHPITYDIKYIAKSELFEMNSAASSKRKQDQTKYRLEVESLLNPDEI 995 (1163)
T ss_pred cHHHHHHHHHHhccCcccccccHHHHHHHHHHHhcccccchHHHHHHHHHHhccccCcCccchhhHHHHHHHHhcCchhh
Confidence 99999999999999999999999999999999999999999999999999666555555544 667999999999 9999
Q ss_pred eEEEEEecccceEEEe
Q 000682 1280 IYRIQLVKSFELFFFL 1295 (1353)
Q Consensus 1280 ~yRie~~~~~~~~~~~ 1295 (1353)
||||+|.+..+++-|.
T Consensus 996 ~Fr~~w~~~~k~~~Iq 1011 (1163)
T COG5602 996 LFRFCWINKFKSFGIQ 1011 (1163)
T ss_pred eeeeeecchhheeeee
Confidence 9999999999888443
No 2
>smart00761 HDAC_interact Histone deacetylase (HDAC) interacting. This domain is found on transcriptional regulators. It forms interactions with histone deacetylases.
Probab=100.00 E-value=2.2e-43 Score=338.19 Aligned_cols=100 Identities=56% Similarity=0.862 Sum_probs=96.5
Q ss_pred CCcccCCccccCCCCCCCCCCCCccccccccccCeeeecccC-CCCcccchhccchhhHHHhhcccchhhHHHHHHHHHH
Q 000682 494 NCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTSG-SEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSS 572 (1353)
Q Consensus 494 ~C~r~gPSYRlLPk~~~~~~CSgR~eLc~sVLND~WVS~t~~-SED~sF~~~RKNqYEE~LfRcEDERfElDm~IE~~~~ 572 (1353)
+|++||||||+|||+|+.++||||++||++||||+|||||+| |||++|++||||||||+|||||||||||||+||++.+
T Consensus 1 ~c~~~gpSYr~Lpk~~~~~~cSgR~~l~~~VLND~wvsvps~~SED~~F~~~rKNqyEE~Lfr~EDeR~E~D~~ie~~~~ 80 (102)
T smart00761 1 NCERCGPSYRLLPKSEKQPKCSGRDELCKEVLNDTWVSHPTWASEDSGFVAHRKNQYEEALFRCEDERFELDMVIESNSS 80 (102)
T ss_pred CCcccCcchhhCCcccCCCCCCCccHHHHHHhCCceEeecCCcccccchhhhhccHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999766 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccCC
Q 000682 573 TAKRAEELLNSINENKITLET 593 (1353)
Q Consensus 573 TI~~LE~l~~ki~~~~~e~~~ 593 (1353)
||++||+|+++|+.|+++++.
T Consensus 81 ti~~le~l~~~~~~~~~~e~~ 101 (102)
T smart00761 81 TIKLLEEILNKIEDMSDEERA 101 (102)
T ss_pred HHHHHHHHHHHHhcCChhhcc
Confidence 999999999999999887654
No 3
>PF08295 Sin3_corepress: Sin3 family co-repressor; InterPro: IPR013194 This domain is found on transcriptional regulators. It forms interactions with histone deacetylases [].
Probab=100.00 E-value=1.6e-41 Score=326.89 Aligned_cols=100 Identities=60% Similarity=0.914 Sum_probs=97.2
Q ss_pred CCcccCCccccCCCCCCCCCCCCccccccccccCeeeecccCCCCcccchhccchhhHHHhhcccchhhHHHHHHHHHHH
Q 000682 494 NCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSST 573 (1353)
Q Consensus 494 ~C~r~gPSYRlLPk~~~~~~CSgR~eLc~sVLND~WVS~t~~SED~sF~~~RKNqYEE~LfRcEDERfElDm~IE~~~~T 573 (1353)
+|++||||||+||++|+.++||||++||++||||+|||||+||||++|++||||||||+|||||||||||||+||+|++|
T Consensus 1 ~c~~~gpSYr~LP~~~~~~~cSgR~~l~~~VLND~wvs~p~~sEd~~f~~~kKnqyEE~lf~~EDeR~E~D~~ie~~~~t 80 (101)
T PF08295_consen 1 NCERCGPSYRLLPKSYQNPPCSGRDELCWSVLNDTWVSVPSWSEDSSFKAMKKNQYEEALFRCEDERFELDMLIESNRST 80 (101)
T ss_pred CCCcCccchhhCCcccCCCCCCCCchhhhhhcCCEEEEeCCccccccccchhhhHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccCC
Q 000682 574 AKRAEELLNSINENKITLET 593 (1353)
Q Consensus 574 I~~LE~l~~ki~~~~~e~~~ 593 (1353)
|+.|++|+++|..|+++++.
T Consensus 81 I~~Le~l~~~i~~~~~ee~~ 100 (101)
T PF08295_consen 81 IKLLEELQEKIQDMSPEERA 100 (101)
T ss_pred HHHHHHHHHHHhcCCHhHhc
Confidence 99999999999999987764
No 4
>KOG4204 consensus Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=100.00 E-value=7.3e-39 Score=349.13 Aligned_cols=158 Identities=63% Similarity=1.049 Sum_probs=147.7
Q ss_pred ccccchhhHHHHHHHHHhccChHHHHHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhhhhcCCccccccCCCCC-
Q 000682 75 KLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEITLDEDE- 153 (1353)
Q Consensus 75 ~l~~~dAl~YL~~VK~~F~d~p~vY~eFL~IMkdfk~~rid~~gVi~rV~~LFkghpdLI~GFN~FLP~gy~I~l~~de- 153 (1353)
.++++||++||++||.+|+++|++|++||+||+|||+++||+++||+||++||+|||+||+|||+|||+||+|+++.+.
T Consensus 16 ~~t~~DAlsYl~~VK~~f~d~p~kY~~FL~im~d~ka~~iD~~~vi~rv~eLfK~h~~Ll~gfN~fLP~~~~i~~~~~~~ 95 (231)
T KOG4204|consen 16 ALTLDDALAYLKAVKEAFQDEPEKYDEFLEIMKDFKAQRIDTPGVIARVKELLKGHPDLLLGFNTFLPPGYKITLSSEAK 95 (231)
T ss_pred CCChHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHccCHHHHHHHHhhCcccceeccCcccc
Confidence 4999999999999999999999999999999999999999999999999999999999999999999999999987431
Q ss_pred ------------CCCCCc-----------chhHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcCCcHHHHHHHHHHh
Q 000682 154 ------------APPKKT-----------VEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASL 210 (1353)
Q Consensus 154 ------------qPp~~~-----------vef~~Ai~FVnKIK~RF~~dPevYk~FLeIL~~y~~~~ksi~eVy~qVa~L 210 (1353)
.+++.. +++.+|++|+||||+||++++++|++||+||++|+++++++.+||++|..|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~fv~klk~rf~~~~~v~~s~l~il~~y~~~~ks~~e~~~eV~~L 175 (231)
T KOG4204|consen 96 DEFTIYGATSYLPSPKVAFHEEILKLLEDVEFDRAISFVNKLKTRFQGDDHVYKSFLEILRMYQEGNKSVSEVYQEVEAL 175 (231)
T ss_pred cccccccccccCCCccccccchhhhhcccchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 123444 889999999999999999999999999999999999999999999999999
Q ss_pred hccChhHHHHHhhhCCCCCCCc
Q 000682 211 FEDHADLLEEFTRFLPDTSATS 232 (1353)
Q Consensus 211 FkghPDLLeEF~~FLP~~~~~~ 232 (1353)
|++|+||+.+|.+|||......
T Consensus 176 ~~~~~DL~~ef~~~lp~~~~~~ 197 (231)
T KOG4204|consen 176 LQGHEDLLEEFSHFLPTDPATG 197 (231)
T ss_pred HccCHHHHHHHHhhccCCcccc
Confidence 9999999999999999985544
No 5
>KOG4204 consensus Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=99.81 E-value=3.6e-19 Score=195.19 Aligned_cols=177 Identities=24% Similarity=0.441 Sum_probs=136.2
Q ss_pred CCcchhHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcCCcHHHHHHHHHHhhccChhHHHHHhhhCCCCCCCccCCC
Q 000682 157 KKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLSHN 236 (1353)
Q Consensus 157 ~~~vef~~Ai~FVnKIK~RF~~dPevYk~FLeIL~~y~~~~ksi~eVy~qVa~LFkghPDLLeEF~~FLP~~~~~~~~~n 236 (1353)
...+++++|++||++||.+|+++|++|.+||+||++|+.+.++..+|+++|+.||+||||||.+|+.|||..........
T Consensus 14 ~~~~t~~DAlsYl~~VK~~f~d~p~kY~~FL~im~d~ka~~iD~~~vi~rv~eLfK~h~~Ll~gfN~fLP~~~~i~~~~~ 93 (231)
T KOG4204|consen 14 SPALTLDDALAYLKAVKEAFQDEPEKYDEFLEIMKDFKAQRIDTPGVIARVKELLKGHPDLLLGFNTFLPPGYKITLSSE 93 (231)
T ss_pred CCCCChHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHccCHHHHHHHHhhCcccceeccCcc
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999877654111
Q ss_pred cccccCCcccCCCCCCCCCCccchhhhhhhccccccccCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhhhhcccCCCC
Q 000682 237 IPFVRNSTQRGNERSAGIPPLRQMQMDKHRRRDRIATSHADRDLSVDRPEMDDEKLMIKMQKEQRRRAEKENRDRRNRDQ 316 (1353)
Q Consensus 237 ~~~~~~~~~~~~~r~~~~P~~~~~~~~K~~~~~r~~~s~~~~~~s~~~p~~~~~~~~~~~~keqr~~~~k~~~~r~~~~~ 316 (1353)
+... ..++.. +...|.+.
T Consensus 94 ~~~~-----------~~~~~~-----------------------~~~~~~~~---------------------------- 111 (231)
T KOG4204|consen 94 AKDE-----------FTIYGA-----------------------TSYLPSPK---------------------------- 111 (231)
T ss_pred cccc-----------cccccc-----------------------cccCCCcc----------------------------
Confidence 1000 000000 00000000
Q ss_pred ccchhccccCcccccccCCCCccccccccCcCCCCCCCccCchhhhhhhhcchhhhHHHHHhhcC--hHHHHHHHHHHHH
Q 000682 317 DDREIEHDNNRDFNLQRFPDKKKSIKKVEGFGANSSLASYDDKDALKSIYNQGFIFCDKVKEKLC--SDDYQAFLKCLHI 394 (1353)
Q Consensus 317 ~~~~~~~~~~~~~~~q~~~~k~k~~~~~~~~~~~p~~~~~~~~~~~k~~~~eEl~FFDKVKk~L~--~~~Y~EFLKcLNL 394 (1353)
...+... ...++ + ..+.++..|..|||+++. .++|+.||.+|++
T Consensus 112 -----------------~~~~~~~---~~~~~---------~-----~~~~~a~~fv~klk~rf~~~~~v~~s~l~il~~ 157 (231)
T KOG4204|consen 112 -----------------VAFHEEI---LKLLE---------D-----VEFDRAISFVNKLKTRFQGDDHVYKSFLEILRM 157 (231)
T ss_pred -----------------ccccchh---hhhcc---------c-----chHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 0000000 00000 0 134578899999999998 7799999999999
Q ss_pred HhcCCCCHHHHHHHHHHHhccChHHHHHHhhhhcc
Q 000682 395 YSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFFER 429 (1353)
Q Consensus 395 YsQeII~r~ELv~lV~~fLG~~pDLm~~Fk~FLg~ 429 (1353)
|.++-.+..|+...|..+++.|+||+.+|..||.-
T Consensus 158 y~~~~ks~~e~~~eV~~L~~~~~DL~~ef~~~lp~ 192 (231)
T KOG4204|consen 158 YQEGNKSVSEVYQEVEALLQGHEDLLEEFSHFLPT 192 (231)
T ss_pred HhhccchHHHHHHHHHHHHccCHHHHHHHHhhccC
Confidence 99999999999999999999999999999999964
No 6
>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=99.78 E-value=2.9e-18 Score=206.44 Aligned_cols=210 Identities=24% Similarity=0.412 Sum_probs=142.5
Q ss_pred CCcchhHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcCCcHHHHHHHHHHhhccChhHHHHHhhhCCCCCCCccCCC
Q 000682 157 KKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLSHN 236 (1353)
Q Consensus 157 ~~~vef~~Ai~FVnKIK~RF~~dPevYk~FLeIL~~y~~~~ksi~eVy~qVa~LFkghPDLLeEF~~FLP~~~~~~~~~n 236 (1353)
-+++++.+|++||++||.+|..+|++|..||+||++|+.+-+++.+|+++|+.||+|.|+||++|+.|||..+....+..
T Consensus 123 ~r~Ldv~DAlsyLe~vK~~f~~rp~iYn~FLdiMkdFKsqaiDtpgVI~RVS~LFrgYP~LIegFNtFLPsgYkie~S~~ 202 (1163)
T COG5602 123 YRPLDVSDALSYLEKVKEQFSNRPEIYNNFLDIMKDFKSQAIDTPGVIERVSVLFRGYPHLIEGFNTFLPSGYKIEGSLP 202 (1163)
T ss_pred CCCCChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHcCChHHHHHHhhhCCCccEEEEecC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999987654211
Q ss_pred cccccCCcccCCCCCCCCCCccchhhhhhhccccccccCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhhhhcccCCCC
Q 000682 237 IPFVRNSTQRGNERSAGIPPLRQMQMDKHRRRDRIATSHADRDLSVDRPEMDDEKLMIKMQKEQRRRAEKENRDRRNRDQ 316 (1353)
Q Consensus 237 ~~~~~~~~~~~~~r~~~~P~~~~~~~~K~~~~~r~~~s~~~~~~s~~~p~~~~~~~~~~~~keqr~~~~k~~~~r~~~~~ 316 (1353)
.+ .+ .+...+.+..|.+.+. +.. ..+.+...++....+|.++.
T Consensus 203 ~~--~~--s~l~vtTP~gp~s~~p-v~s-----s~y~a~~n~~qrts~p~lps--------------------------- 245 (1163)
T COG5602 203 QP--NG--SRLHVTTPQGPLSSPP-VQS-----SYYVAPCNHDQRTSHPTLPS--------------------------- 245 (1163)
T ss_pred CC--CC--CeeeecCCCCCCCCCC-ccc-----ccccccccccccccCCCCcc---------------------------
Confidence 10 00 1111111111111100 000 00000000000011111000
Q ss_pred ccchhccccCcccccccCCCCccccccccCcCCCCCCCccCchhhhhhhhcchhhhHHHHHhhcC--hHHHHHHHHHHHH
Q 000682 317 DDREIEHDNNRDFNLQRFPDKKKSIKKVEGFGANSSLASYDDKDALKSIYNQGFIFCDKVKEKLC--SDDYQAFLKCLHI 394 (1353)
Q Consensus 317 ~~~~~~~~~~~~~~~q~~~~k~k~~~~~~~~~~~p~~~~~~~~~~~k~~~~eEl~FFDKVKk~L~--~~~Y~EFLKcLNL 394 (1353)
+ .|+-+..+ ...|. +.+.-...-+++.++|..|||.++. ++.|.+||.+|.-
T Consensus 246 -----------~--~Q~e~s~~---------~~~~s----d~~~~~~~d~nqAI~~vnkVK~r~~~~pe~y~~fl~~Lrt 299 (1163)
T COG5602 246 -----------D--SQPEPSAP---------SHMPS----DARGKHQVDFNQAIIFVNKVKVRFQNNPEMYYDFLDSLRT 299 (1163)
T ss_pred -----------c--cCCCCCCc---------ccCCc----ccccccceehhHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence 0 01000000 00010 0000011347789999999999998 9999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHhccChHHHHHHhhhhcc
Q 000682 395 YSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFFER 429 (1353)
Q Consensus 395 YsQeII~r~ELv~lV~~fLG~~pDLm~~Fk~FLg~ 429 (1353)
|..+.-+-.|+..+|..++..+|||+++|+.||..
T Consensus 300 yq~~qr~i~ev~~~Vt~lfa~~PdLleeFk~FLPd 334 (1163)
T COG5602 300 YQMKQRSIQEVYARVTKLFAEAPDLLEEFKEFLPD 334 (1163)
T ss_pred HHhhhccHHHHHHHHHHHHhhChHHHHHHHHhCcc
Confidence 99999999999999999999999999999999974
No 7
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=99.33 E-value=1.3e-12 Score=110.36 Aligned_cols=47 Identities=40% Similarity=0.795 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhhhhcCC
Q 000682 96 REKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLP 142 (1353)
Q Consensus 96 p~vY~eFL~IMkdfk~~rid~~gVi~rV~~LFkghpdLI~GFN~FLP 142 (1353)
|++|++||+||++|+.++++..+|+++|+.||+||||||.+|+.|||
T Consensus 1 p~~Y~~FL~il~~y~~~~~~~~~v~~~v~~Ll~~hpdLl~~F~~FlP 47 (47)
T PF02671_consen 1 PEVYNEFLKILNDYKKGRISRSEVIEEVSELLRGHPDLLEEFNRFLP 47 (47)
T ss_dssp HHHHHHHHHHHHHHHCTCSCHHHHHHHHHHHTTT-HHHHHHHHHHSS
T ss_pred ChHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCHHHHHHHHhhCc
Confidence 89999999999999999999999999999999999999999999998
No 8
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=99.22 E-value=1.4e-11 Score=104.19 Aligned_cols=47 Identities=53% Similarity=0.863 Sum_probs=45.4
Q ss_pred hhhHHHHHHHHHHHhhcCCcHHHHHHHHHHhhccChhHHHHHhhhCC
Q 000682 180 EHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLP 226 (1353)
Q Consensus 180 PevYk~FLeIL~~y~~~~ksi~eVy~qVa~LFkghPDLLeEF~~FLP 226 (1353)
|++|++||+||++|+++.++..+|+++|+.||++||||+++|+.|||
T Consensus 1 p~~Y~~FL~il~~y~~~~~~~~~v~~~v~~Ll~~hpdLl~~F~~FlP 47 (47)
T PF02671_consen 1 PEVYNEFLKILNDYKKGRISRSEVIEEVSELLRGHPDLLEEFNRFLP 47 (47)
T ss_dssp HHHHHHHHHHHHHHHCTCSCHHHHHHHHHHHTTT-HHHHHHHHHHSS
T ss_pred ChHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCHHHHHHHHhhCc
Confidence 78999999999999999999999999999999999999999999998
No 9
>PTZ00146 fibrillarin; Provisional
Probab=93.75 E-value=0.1 Score=60.57 Aligned_cols=8 Identities=38% Similarity=0.538 Sum_probs=3.8
Q ss_pred cccccccc
Q 000682 485 KSIQELDL 492 (1353)
Q Consensus 485 kp~~elDl 492 (1353)
+++..++|
T Consensus 265 ~~~e~v~L 272 (293)
T PTZ00146 265 KPKEQLTL 272 (293)
T ss_pred ceEEEEec
Confidence 44444554
No 10
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=92.63 E-value=0.1 Score=66.99 Aligned_cols=8 Identities=38% Similarity=0.497 Sum_probs=3.4
Q ss_pred CCCCCCCC
Q 000682 26 ESYGLSPQ 33 (1353)
Q Consensus 26 ~~~~~~~~ 33 (1353)
..||.+..
T Consensus 1206 GGYGgsa~ 1213 (1282)
T KOG0921|consen 1206 GGYGGSAP 1213 (1282)
T ss_pred CCCCCCCC
Confidence 34444433
No 11
>PLN03138 Protein TOC75; Provisional
Probab=89.48 E-value=0.37 Score=62.46 Aligned_cols=30 Identities=17% Similarity=0.158 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 000682 382 SDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLL 413 (1353)
Q Consensus 382 ~~~Y~EFLKcLNLYsQeII~r~ELv~lV~~fL 413 (1353)
+++.+||+..+ +.++.+++++|..-+..|-
T Consensus 282 ~~v~~e~f~~~--~~~gklN~e~Lq~die~I~ 311 (796)
T PLN03138 282 KSVRREVLGML--RDQGKVSARLLQRIRDRVQ 311 (796)
T ss_pred hHHHHHHHhhh--ccCCcCCHHHHHHHHHHHH
Confidence 67788888777 5666799988877655543
No 12
>PLN03138 Protein TOC75; Provisional
Probab=89.02 E-value=0.38 Score=62.36 Aligned_cols=13 Identities=8% Similarity=0.279 Sum_probs=8.2
Q ss_pred CceeecCChhHHH
Q 000682 721 HLEYGYSDSNIHE 733 (1353)
Q Consensus 721 ~l~f~y~D~~I~~ 733 (1353)
.+.+.|.|+.|--
T Consensus 489 ~f~lsytdPWi~g 501 (796)
T PLN03138 489 SFKLEYVHPYLDG 501 (796)
T ss_pred EEEEEeecccccC
Confidence 4556677777654
No 13
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=88.68 E-value=0.41 Score=57.62 Aligned_cols=12 Identities=25% Similarity=0.398 Sum_probs=8.7
Q ss_pred ChhhHHHHHHHH
Q 000682 179 DEHVYKSFLEIL 190 (1353)
Q Consensus 179 dPevYk~FLeIL 190 (1353)
=|++|.-||+-|
T Consensus 200 LPQafdlFLKhl 211 (641)
T KOG3915|consen 200 LPQAFDLFLKHL 211 (641)
T ss_pred cHHHHHHHHHHH
Confidence 477888888754
No 14
>PHA00370 III attachment protein
Probab=86.76 E-value=1.4 Score=50.10 Aligned_cols=13 Identities=15% Similarity=0.054 Sum_probs=7.7
Q ss_pred hhHHHHHHHHHhc
Q 000682 81 ALTYLKEVKDMFQ 93 (1353)
Q Consensus 81 Al~YL~~VK~~F~ 93 (1353)
+..--+++|+.+-
T Consensus 148 ~~kma~a~kdalt 160 (297)
T PHA00370 148 YPKMANANKDALT 160 (297)
T ss_pred cHHHhhhhhhhhc
Confidence 4455566776664
No 15
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=86.35 E-value=0.43 Score=57.44 Aligned_cols=8 Identities=25% Similarity=0.634 Sum_probs=3.2
Q ss_pred HHhhhCCC
Q 000682 220 EFTRFLPD 227 (1353)
Q Consensus 220 EF~~FLP~ 227 (1353)
+|..+.-|
T Consensus 260 DFe~Ly~D 267 (641)
T KOG3915|consen 260 DFETLYND 267 (641)
T ss_pred cHHHHHhh
Confidence 34443333
No 16
>PHA00370 III attachment protein
Probab=81.84 E-value=1.6 Score=49.53 Aligned_cols=10 Identities=20% Similarity=0.325 Sum_probs=4.4
Q ss_pred HHhccChhHH
Q 000682 125 DLFKGHNNLI 134 (1353)
Q Consensus 125 ~LFkghpdLI 134 (1353)
+|=.+|--++
T Consensus 217 ~lg~g~gS~~ 226 (297)
T PHA00370 217 QLGEGDGSPL 226 (297)
T ss_pred hhcccCCcHH
Confidence 4444554433
No 17
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=79.09 E-value=21 Score=40.45 Aligned_cols=8 Identities=13% Similarity=0.679 Sum_probs=3.8
Q ss_pred HHHHHHHh
Q 000682 85 LKEVKDMF 92 (1353)
Q Consensus 85 L~~VK~~F 92 (1353)
+++||..|
T Consensus 106 m~~ikavL 113 (238)
T PF02084_consen 106 MEDIKAVL 113 (238)
T ss_pred HHHHHHHh
Confidence 44444444
No 18
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=77.00 E-value=4.1 Score=49.88 Aligned_cols=15 Identities=20% Similarity=0.381 Sum_probs=9.4
Q ss_pred CcHHHHHHHHHHhhc
Q 000682 198 KDINEVYSEVASLFE 212 (1353)
Q Consensus 198 ksi~eVy~qVa~LFk 212 (1353)
..+.++-.+|..|..
T Consensus 185 ~~~~~~~~~~~~~~~ 199 (421)
T PF04285_consen 185 RELRELEEELEELEA 199 (421)
T ss_pred ccHHHHHHHHHHHhc
Confidence 346666667776654
No 19
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=75.91 E-value=4.1 Score=44.72 Aligned_cols=6 Identities=50% Similarity=0.396 Sum_probs=2.2
Q ss_pred CCCCCC
Q 000682 23 PRGESY 28 (1353)
Q Consensus 23 ~~~~~~ 28 (1353)
+|....
T Consensus 110 sr~~~~ 115 (182)
T PRK06958 110 GRGGSG 115 (182)
T ss_pred CCccCc
Confidence 343333
No 20
>cd07354 HN_L-delphilin-R1_like First harmonin_N_like domain (repeat 1) of L-delphilin, and related domains. This subgroup contains the first of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin, isoform 1), and related domains. Delphilin is a scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. The N-terminus of L-delphilin contains this harmonin_N_like domain preceded by a postsynaptic density-95/discs-large/ZO-1 (PDZ) protein-binding domain, PDZ1. L-delphilin, in common with the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta) has a second harmonin_N_like domain (not belonging to this subgroup) and a second PDZ domain, PDZ2. This first harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=75.49 E-value=10 Score=36.56 Aligned_cols=69 Identities=17% Similarity=0.354 Sum_probs=58.9
Q ss_pred chhhHHHHHHHHHhccChHHHHHHHHHHHHHHhcCCChhhHHHHHHHHhcc--ChhHHhhhhhcCCcccccc
Q 000682 79 SDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKG--HNNLIFGFNTFLPKGYEIT 148 (1353)
Q Consensus 79 ~dAl~YL~~VK~~F~d~p~vY~eFL~IMkdfk~~rid~~gVi~rV~~LFkg--hpdLI~GFN~FLP~gy~I~ 148 (1353)
+-|..|..+|..-+.++|.+-++.+++++.|-+.+ +++.++..+.-++.. |--||...-.|+|.-++..
T Consensus 3 ~kA~eF~~Kvd~iL~~dp~~Ke~l~~aLk~Ya~~k-~vd~l~~aL~~~L~~e~~~~Lld~IR~fIP~KHr~~ 73 (80)
T cd07354 3 RKAQEFSRKVDAILGDDPVKKEQVFAALKQYAADK-NVDCLVWALCGLLQTEAHKKLLDEIRIFIPKKHRAR 73 (80)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHhCcHHHHHHHHHhHhcCCchhHHH
Confidence 35889999999999999999999999999998865 677888888888876 4578999999999876643
No 21
>PF13865 FoP_duplication: C-terminal duplication domain of Friend of PRMT1
Probab=74.28 E-value=8.6 Score=36.38 Aligned_cols=27 Identities=19% Similarity=0.430 Sum_probs=15.7
Q ss_pred Ccccccch---hh-HHHHHHHHHhccChHHH
Q 000682 73 SQKLTTSD---AL-TYLKEVKDMFQDQREKY 99 (1353)
Q Consensus 73 ~~~l~~~d---Al-~YL~~VK~~F~d~p~vY 99 (1353)
.+++|.++ -| .|....+..+-.+-+-|
T Consensus 37 ~~~kT~EeLDaELD~Ym~~~~~~LD~~Ld~Y 67 (74)
T PF13865_consen 37 KPPKTAEELDAELDAYMSKTKSKLDAELDSY 67 (74)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666544 22 78877777765444444
No 22
>COG4371 Predicted membrane protein [Function unknown]
Probab=71.91 E-value=8.2 Score=44.06 Aligned_cols=16 Identities=13% Similarity=0.102 Sum_probs=8.9
Q ss_pred hHHHHHHHHhccChhH
Q 000682 118 GVIARVKDLFKGHNNL 133 (1353)
Q Consensus 118 gVi~rV~~LFkghpdL 133 (1353)
.|+....-.+-.||+-
T Consensus 181 ~vlQEA~LalLRHPEy 196 (334)
T COG4371 181 RVLQEAALALLRHPEY 196 (334)
T ss_pred HHHHHHHHHHHcCCce
Confidence 3555555555567653
No 23
>KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription]
Probab=70.76 E-value=1.2 Score=50.10 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=7.3
Q ss_pred CcccccchhhHHHH
Q 000682 73 SQKLTTSDALTYLK 86 (1353)
Q Consensus 73 ~~~l~~~dAl~YL~ 86 (1353)
+..|.++.-.-||+
T Consensus 27 sk~l~iq~KrfYlD 40 (263)
T KOG3074|consen 27 SKRLQIQHKRFYLD 40 (263)
T ss_pred hhhhhhhhheEEEE
Confidence 34555555555554
No 24
>cd07354 HN_L-delphilin-R1_like First harmonin_N_like domain (repeat 1) of L-delphilin, and related domains. This subgroup contains the first of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin, isoform 1), and related domains. Delphilin is a scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. The N-terminus of L-delphilin contains this harmonin_N_like domain preceded by a postsynaptic density-95/discs-large/ZO-1 (PDZ) protein-binding domain, PDZ1. L-delphilin, in common with the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta) has a second harmonin_N_like domain (not belonging to this subgroup) and a second PDZ domain, PDZ2. This first harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=69.51 E-value=14 Score=35.76 Aligned_cols=68 Identities=21% Similarity=0.400 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcCCcHHHHHHHHHHhhc--cChhHHHHHhhhCCCCCCC
Q 000682 163 EEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFE--DHADLLEEFTRFLPDTSAT 231 (1353)
Q Consensus 163 ~~Ai~FVnKIK~RF~~dPevYk~FLeIL~~y~~~~ksi~eVy~qVa~LFk--ghPDLLeEF~~FLP~~~~~ 231 (1353)
+.|..|..||..-+.++|..=....++|++|..+ +.++.+...+..++. .|--|+++...|+|..+..
T Consensus 3 ~kA~eF~~Kvd~iL~~dp~~Ke~l~~aLk~Ya~~-k~vd~l~~aL~~~L~~e~~~~Lld~IR~fIP~KHr~ 72 (80)
T cd07354 3 RKAQEFSRKVDAILGDDPVKKEQVFAALKQYAAD-KNVDCLVWALCGLLQTEAHKKLLDEIRIFIPKKHRA 72 (80)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHhCcHHHHHHHHHhHhcCCchhHH
Confidence 5699999999999999999999999999999664 456777777777774 6678999999999987553
No 25
>PF11867 DUF3387: Domain of unknown function (DUF3387); InterPro: IPR021810 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with PF04851 from PFAM, PF04313 from PFAM.
Probab=63.63 E-value=33 Score=40.83 Aligned_cols=99 Identities=23% Similarity=0.300 Sum_probs=62.5
Q ss_pred CChhhHHHHHHHHhccCh---hHHhhhhhcCCccccccCCCCC------CCCCCcchhHHHHHHHH-HHHhhcCCChhhH
Q 000682 114 TDTAGVIARVKDLFKGHN---NLIFGFNTFLPKGYEITLDEDE------APPKKTVEFEEAITFVN-KIKKRFHNDEHVY 183 (1353)
Q Consensus 114 id~~gVi~rV~~LFkghp---dLI~GFN~FLP~gy~I~l~~de------qPp~~~vef~~Ai~FVn-KIK~RF~~dPevY 183 (1353)
+|..++-.+|++|+..|= ..+.-|..+=|..-.|.+-.++ .-+.+....+.-..+++ +|+.++..||..|
T Consensus 117 ~~~~~~~~~i~~Lid~~I~s~~v~~i~~~~~~~~~disild~eFl~~v~~~~~k~~~~e~L~~~l~~~I~~~~~~N~~~~ 196 (335)
T PF11867_consen 117 PDIKEVEEKIRQLIDESIASEGVVDIFEAAGLKKPDISILDDEFLEEVKKMKSKNLKAELLEKLLRDEIKVRMKENPVRY 196 (335)
T ss_pred CCHHHHHHHHHHHHHHHHhcccchhHHhhcCCCCCChhhcCHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 688999999999998763 1222233221111112211110 01122333333344444 6899999999999
Q ss_pred HHHH----HHHHHHhhcCCcHHHHHHHHHHhhc
Q 000682 184 KSFL----EILNMYRKEHKDINEVYSEVASLFE 212 (1353)
Q Consensus 184 k~FL----eIL~~y~~~~ksi~eVy~qVa~LFk 212 (1353)
++|- ++|..|+++.++..++++++..|-+
T Consensus 197 ~~fsErLe~iI~~Y~~~~i~~~e~~~eLi~la~ 229 (335)
T PF11867_consen 197 KKFSERLEEIIEKYNNRSISSEEVIEELIKLAK 229 (335)
T ss_pred HHHHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 9988 4788899999999999999987643
No 26
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=60.34 E-value=7.4 Score=50.18 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=9.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCc
Q 000682 54 GGGSGVGGGGGGMTAGMGTSQ 74 (1353)
Q Consensus 54 ~~~~~~~~~~~~~~~g~~~~~ 74 (1353)
|..||+.||||..|+|+.+++
T Consensus 627 ~~~~~~~~~~~~~~~~~~~~~ 647 (653)
T PTZ00009 627 GMPGGMPGGAGPAGAGASSGP 647 (653)
T ss_pred CCCCCCCCCCCCCCCCCCCCC
Confidence 344444444444444444443
No 27
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=59.84 E-value=7.6 Score=50.08 Aligned_cols=32 Identities=41% Similarity=0.701 Sum_probs=15.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000682 38 GAGGGGGAGGGGGAGAGGGSGVGGGGGGMTAG 69 (1353)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 69 (1353)
+||||-++|+.||-.||+.||+|..|+|+..|
T Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (653)
T PTZ00009 615 AAGGGMPGGMPGGMPGGMPGGAGPAGAGASSG 646 (653)
T ss_pred hccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 34455555555555555555544444443333
No 28
>PTZ00110 helicase; Provisional
Probab=57.61 E-value=21 Score=45.08 Aligned_cols=11 Identities=27% Similarity=0.461 Sum_probs=4.7
Q ss_pred hhHHHHHHHHH
Q 000682 729 SNIHEDLYKLV 739 (1353)
Q Consensus 729 ~~I~~D~~~Li 739 (1353)
..+..++.+++
T Consensus 486 ~~~~~~l~~~l 496 (545)
T PTZ00110 486 YRLARDLVKVL 496 (545)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 29
>PF05387 Chorion_3: Chorion family 3; InterPro: IPR008449 This family consists Drosophila chorion proteins S36 and S38, which are involved in chorion membrane formation. The proteins consist of a central domain and two flanking 'arms'. The central domain contains tandemly repetitive peptides, which apparently generate a secondary structure of beta-sheet strands alternating with beta-turns, most probably, forming a twisted beta-pleated sheet or beta-barrel [].
Probab=56.75 E-value=12 Score=42.63 Aligned_cols=17 Identities=6% Similarity=0.186 Sum_probs=14.3
Q ss_pred cchhhHHHHHHHHHhcc
Q 000682 78 TSDALTYLKEVKDMFQD 94 (1353)
Q Consensus 78 ~~dAl~YL~~VK~~F~d 94 (1353)
--|+...|..|..+++.
T Consensus 70 ~peea~r~~~~Qaqygs 86 (277)
T PF05387_consen 70 SPEEAGRAQRVQAQYGS 86 (277)
T ss_pred ChhHhhhhccchhhhcc
Confidence 36888999999999984
No 30
>COG4174 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=55.72 E-value=28 Score=40.50 Aligned_cols=29 Identities=7% Similarity=0.310 Sum_probs=23.4
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHHHHHh
Q 000682 83 TYLKEVKDMFQDQREKYDMFLEVMKDFKA 111 (1353)
Q Consensus 83 ~YL~~VK~~F~d~p~vY~eFL~IMkdfk~ 111 (1353)
.++++++.+|.=+...-+.|+..|.+|..
T Consensus 83 e~i~~i~~~~GFDKp~~eR~~~Ml~~y~r 111 (364)
T COG4174 83 ELIAEIEKQYGFDKPPLERYFLMLWDYAR 111 (364)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 57899999999444445899999999975
No 31
>PF07655 Secretin_N_2: Secretin N-terminal domain; InterPro: IPR011514 This is a short domain found in bacterial type II/III secretory system proteins. The architecture of these proteins suggests that this family may be functionally analogous to IPR005644 from INTERPRO.; GO: 0009297 pilus assembly, 0019867 outer membrane
Probab=54.83 E-value=15 Score=36.36 Aligned_cols=34 Identities=15% Similarity=0.363 Sum_probs=24.0
Q ss_pred CCCCCCCCCCCCCCcccccchhhHHHHHHHHHhc
Q 000682 60 GGGGGGMTAGMGTSQKLTTSDALTYLKEVKDMFQ 93 (1353)
Q Consensus 60 ~~~~~~~~~g~~~~~~l~~~dAl~YL~~VK~~F~ 93 (1353)
++.+++..+.......+++.....|-+.|+..++
T Consensus 47 ~~~~~~~s~~~~s~~~i~t~s~~dfW~~L~~~l~ 80 (98)
T PF07655_consen 47 GSSSSGGSGSSSSGTSITTESKSDFWEDLQKTLQ 80 (98)
T ss_pred CCcCCCccccccCceEEEEEECCchHHHHHHHHH
Confidence 3334444445666788999999999998887764
No 32
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.33 E-value=35 Score=41.04 Aligned_cols=35 Identities=17% Similarity=0.358 Sum_probs=22.8
Q ss_pred ChHHHHHHHHHH------HHHHhcCCChhhHHHHHHHHhccC
Q 000682 95 QREKYDMFLEVM------KDFKAQRTDTAGVIARVKDLFKGH 130 (1353)
Q Consensus 95 ~p~vY~eFL~IM------kdfk~~rid~~gVi~rV~~LFkgh 130 (1353)
+|++--.|.++| -.|.++. -+..||..++.+|-|-
T Consensus 336 dp~v~aal~d~~~np~n~~kyq~n~-kv~~~i~kl~~kf~g~ 376 (377)
T KOG1308|consen 336 DPEVQAALMDVSQNPANMMKYQNNP-KVMDVISKLSQKFPGM 376 (377)
T ss_pred ChHHHhhhhhcccChHHHHHhccCh-HHHHHHHHHHhhcCCC
Confidence 355555555553 3455543 2578999999999874
No 33
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=52.65 E-value=25 Score=40.48 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=8.5
Q ss_pred hccccccccCCCcc
Q 000682 484 AKSIQELDLSNCQR 497 (1353)
Q Consensus 484 ~kp~~elDls~C~r 497 (1353)
.+|...|-|.-|++
T Consensus 288 lkP~EqvtLEP~er 301 (317)
T KOG1596|consen 288 LKPKEQVTLEPFER 301 (317)
T ss_pred cCchheeccccccC
Confidence 45666666666654
No 34
>PF05642 Sporozoite_P67: Sporozoite P67 surface antigen; InterPro: IPR008845 This family consists of several Theileria P67 surface antigens. A stage specific surface antigen of Theileria parva, p67, is the basis for the development of an anti-sporozoite vaccine for the control of East Coast fever (ECF) in Bos taurus. The antigen has been shown to contain five distinct linear peptide sequences recognised by sporozoite-neutralising murine monoclonal antibodies [].
Probab=51.79 E-value=21 Score=44.89 Aligned_cols=11 Identities=36% Similarity=0.748 Sum_probs=6.3
Q ss_pred HHHHHHHHHHh
Q 000682 403 NDLQNLVTDLL 413 (1353)
Q Consensus 403 ~ELv~lV~~fL 413 (1353)
+||-.||..||
T Consensus 371 ee~~~lv~tli 381 (727)
T PF05642_consen 371 EELKSLVNTLI 381 (727)
T ss_pred HHHHHHHHHHH
Confidence 45555566555
No 35
>COG4371 Predicted membrane protein [Function unknown]
Probab=49.58 E-value=24 Score=40.56 Aligned_cols=15 Identities=27% Similarity=0.262 Sum_probs=6.2
Q ss_pred HHHHHHHHHhhccCh
Q 000682 201 NEVYSEVASLFEDHA 215 (1353)
Q Consensus 201 ~eVy~qVa~LFkghP 215 (1353)
..|.++.+-.+--||
T Consensus 180 ~~vlQEA~LalLRHP 194 (334)
T COG4371 180 ARVLQEAALALLRHP 194 (334)
T ss_pred HHHHHHHHHHHHcCC
Confidence 344444443333343
No 36
>PRK05325 hypothetical protein; Provisional
Probab=47.27 E-value=19 Score=44.01 Aligned_cols=17 Identities=18% Similarity=0.405 Sum_probs=10.1
Q ss_pred hhHHHHHHHHHHHhhcC
Q 000682 161 EFEEAITFVNKIKKRFH 177 (1353)
Q Consensus 161 ef~~Ai~FVnKIK~RF~ 177 (1353)
..+--..+.+.+|.|.+
T Consensus 146 ~l~~~RT~r~al~Rria 162 (401)
T PRK05325 146 NLDKKRTLREALKRRIA 162 (401)
T ss_pred cchHHHHHHHHHHHHhh
Confidence 44455566666766654
No 37
>KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription]
Probab=45.70 E-value=12 Score=42.50 Aligned_cols=10 Identities=40% Similarity=0.707 Sum_probs=5.1
Q ss_pred HHHHHHHHHH
Q 000682 184 KSFLEILNMY 193 (1353)
Q Consensus 184 k~FLeIL~~y 193 (1353)
..|+++|+.|
T Consensus 71 aef~d~l~~f 80 (263)
T KOG3074|consen 71 AEFRDILNDF 80 (263)
T ss_pred HHHHHHHHHH
Confidence 3455555544
No 38
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=45.41 E-value=36 Score=43.46 Aligned_cols=10 Identities=10% Similarity=0.355 Sum_probs=5.2
Q ss_pred hhHHHHHhhc
Q 000682 371 IFCDKVKEKL 380 (1353)
Q Consensus 371 ~FFDKVKk~L 380 (1353)
+|.-+++.++
T Consensus 556 ~~~~~~~~~~ 565 (572)
T PRK04537 556 SLLGRIGRRL 565 (572)
T ss_pred HHHHHHHHHH
Confidence 4555555554
No 39
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=41.54 E-value=64 Score=30.53 Aligned_cols=45 Identities=11% Similarity=0.279 Sum_probs=39.3
Q ss_pred hhHHHHHhhcChHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcc
Q 000682 371 IFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGK 415 (1353)
Q Consensus 371 ~FFDKVKk~L~~~~Y~EFLKcLNLYsQeII~r~ELv~lV~~fLG~ 415 (1353)
..|..+++.|.++......+..+-|-+..|+|+||+..+..+.|+
T Consensus 13 ~L~~~l~~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD 57 (70)
T PF12174_consen 13 MLFSALSKHLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVGD 57 (70)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 368888999987777777888888999999999999999999994
No 40
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=41.44 E-value=23 Score=39.11 Aligned_cols=7 Identities=14% Similarity=0.221 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 000682 101 MFLEVMK 107 (1353)
Q Consensus 101 eFL~IMk 107 (1353)
.+.+.|+
T Consensus 131 DLKDHmR 137 (241)
T KOG0105|consen 131 DLKDHMR 137 (241)
T ss_pred HHHHHHH
Confidence 3333343
No 41
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=39.10 E-value=32 Score=41.79 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=17.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhccChHHHHHHhhhh
Q 000682 387 AFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFF 427 (1353)
Q Consensus 387 EFLKcLNLYsQeII~r~ELv~lV~~fLG~~pDLm~~Fk~FL 427 (1353)
+.|.++|+|.=.-|... ..+..||..|+.-|
T Consensus 317 ~llp~~~~f~Y~Ei~~~----------~~~~~l~~~y~~~i 347 (371)
T TIGR02877 317 KLLEVCNLFGYGEIMPY----------GYSNTLKNKFKNEI 347 (371)
T ss_pred HHHHhhheEEEEEecCC----------CCcchHHHHHHhhh
Confidence 46777777765444320 23456776666534
No 42
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=37.75 E-value=1.2e+02 Score=35.67 Aligned_cols=32 Identities=19% Similarity=0.079 Sum_probs=20.0
Q ss_pred cccchhhHHHHHHHHHhcc--ChHHHHHHHHHHH
Q 000682 76 LTTSDALTYLKEVKDMFQD--QREKYDMFLEVMK 107 (1353)
Q Consensus 76 l~~~dAl~YL~~VK~~F~d--~p~vY~eFL~IMk 107 (1353)
.++.-...-+..|=+.++. +-+..-.||--|-
T Consensus 57 pt~~fS~eQvacvCe~L~q~Gd~erL~rFlwsLp 90 (304)
T KOG0775|consen 57 PTFGFSEEQVACVCESLQQGGDIERLGRFLWSLP 90 (304)
T ss_pred CCcCCCHHHHHHHHHHHHhccCHHHHHHHHHcCc
Confidence 3444444556667777765 6777788876544
No 43
>PF07466 DUF1517: Protein of unknown function (DUF1517); InterPro: IPR010903 This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=37.04 E-value=63 Score=38.11 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=11.1
Q ss_pred cHHHHHHHHHHhhccChhH
Q 000682 199 DINEVYSEVASLFEDHADL 217 (1353)
Q Consensus 199 si~eVy~qVa~LFkghPDL 217 (1353)
-+..|.+++.-.|--|||.
T Consensus 138 Gl~~~L~E~~l~LLR~~~~ 156 (289)
T PF07466_consen 138 GLARVLQETTLALLRHPEY 156 (289)
T ss_pred HHHHHHHHHHHHHHhCcCc
Confidence 3456666666655556654
No 44
>PF09060 L27_N: L27_N; InterPro: IPR015145 The L27_N domain plays a role in the biogenesis of tight junctions and in the establishment of cell polarity in epithelial cells. Each L27_N domain consists of three alpha-helices, the first two of which form an antiparallel coiled-coil. Two L27 domains come together to form a four-helical bundle with the antiparallel coiled-coils formed by the first two helices. The third helix of each domain forms another coiled-coil packing at one end of the four-helix bundle, creating a large hydrophobic interface: the hydrophobic interactions are the major force that drives heterodimer formation []. ; PDB: 1Y76_B 3UIT_B 1VF6_C.
Probab=35.44 E-value=37 Score=30.03 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHhhchhhhHHHHHH
Q 000682 1224 LDKLLYRLCKQLQTVAADEMDNKLIQL 1250 (1353)
Q Consensus 1224 lDKLI~~lvKqlq~i~sDe~~~ell~L 1250 (1353)
||.|+++| |++||+++|..+++=++|
T Consensus 2 leell~sL-k~iqh~L~D~qSQ~Dv~l 27 (49)
T PF09060_consen 2 LEELLSSL-KHIQHCLNDSQSQQDVEL 27 (49)
T ss_dssp HHHHHHHH-HHHHCCH-SHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHhhccHhhHHhHHH
Confidence 57777776 999999999887774433
No 45
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=35.04 E-value=2.5e+02 Score=36.27 Aligned_cols=49 Identities=20% Similarity=0.199 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHhccChh-HHhhhhhcCCccccccC
Q 000682 101 MFLEVMKDFKAQRTDTAGVIARVKDLFKGHNN-LIFGFNTFLPKGYEITL 149 (1353)
Q Consensus 101 eFL~IMkdfk~~rid~~gVi~rV~~LFkghpd-LI~GFN~FLP~gy~I~l 149 (1353)
-||--.-.|--+.--+.++..|-..+=+-.-. .-..|..||--.-.|..
T Consensus 66 ~fl~rciaypfn~qq~~dmarrq~kv~kqel~~irerf~~fl~get~i~a 115 (1218)
T KOG3543|consen 66 MFLARCIAYPFNGQQTGDMARRQMKVNKQELARIRERFTLFLKGETNIAA 115 (1218)
T ss_pred HHHHHHhcccCCCCCccHHHHHHHhhhHHHHHHHHHHHHHHHcCcchhhh
Confidence 45555555555444455555554444333222 23568889965455544
No 46
>KOG4462 consensus WASP-interacting protein VRP1/WIP, contains WH2 domain [Cytoskeleton]
Probab=34.32 E-value=46 Score=39.94 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=8.6
Q ss_pred cccCCCcccCCcc
Q 000682 7 DVYGGSQFKRPLT 19 (1353)
Q Consensus 7 ~~~~~~~~~~~~~ 19 (1353)
|+.-|..||....
T Consensus 37 DI~KG~KLKK~~t 49 (437)
T KOG4462|consen 37 DIQKGKKLKKATT 49 (437)
T ss_pred Hhhhcceecceec
Confidence 4555778887663
No 47
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=31.42 E-value=91 Score=41.02 Aligned_cols=18 Identities=33% Similarity=0.661 Sum_probs=12.4
Q ss_pred hhccccchHHHHHHHHHH
Q 000682 680 DSKNLSTKSLVAEIKQFK 697 (1353)
Q Consensus 680 DkK~ls~K~Lv~EIe~i~ 697 (1353)
|-|-.+..-+++.|.+.+
T Consensus 969 d~kkysmEEFFaDi~tFr 986 (1102)
T KOG1924|consen 969 DPKKYSMEEFFADIRTFR 986 (1102)
T ss_pred CcccCcHHHHHHHHHHHH
Confidence 556677777777777654
No 48
>PF05642 Sporozoite_P67: Sporozoite P67 surface antigen; InterPro: IPR008845 This family consists of several Theileria P67 surface antigens. A stage specific surface antigen of Theileria parva, p67, is the basis for the development of an anti-sporozoite vaccine for the control of East Coast fever (ECF) in Bos taurus. The antigen has been shown to contain five distinct linear peptide sequences recognised by sporozoite-neutralising murine monoclonal antibodies [].
Probab=31.32 E-value=96 Score=39.51 Aligned_cols=7 Identities=43% Similarity=0.610 Sum_probs=3.5
Q ss_pred HHHHhhc
Q 000682 374 DKVKEKL 380 (1353)
Q Consensus 374 DKVKk~L 380 (1353)
.++|++|
T Consensus 363 ~~lk~fl 369 (727)
T PF05642_consen 363 EKLKKFL 369 (727)
T ss_pred HHHHHHH
Confidence 3455555
No 49
>PRK05325 hypothetical protein; Provisional
Probab=31.10 E-value=44 Score=41.06 Aligned_cols=11 Identities=9% Similarity=0.280 Sum_probs=5.4
Q ss_pred HHHHHHHHHhc
Q 000682 387 AFLKCLHIYSN 397 (1353)
Q Consensus 387 EFLKcLNLYsQ 397 (1353)
+.|..+|+|.=
T Consensus 338 ~llp~~~~f~Y 348 (401)
T PRK05325 338 ELLPVCNYFAY 348 (401)
T ss_pred HHHHHhhheEE
Confidence 44455555543
No 50
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=30.62 E-value=1.6e+02 Score=39.71 Aligned_cols=41 Identities=10% Similarity=0.175 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhchhhhhcccCCCCCCchHHHHHHHHHHHHhhcC
Q 000682 1153 HQTLYERIQWAKMNTTGAEMKRRTSKEASCSDLYARFMTALYNLLDG 1199 (1353)
Q Consensus 1153 hqiLYeRL~~~K~~s~~~e~~~k~~~d~~~~~~Y~~fL~~l~~LldG 1199 (1353)
+.++.+||.++..-+-... |-..-..+|.-+|+.+-.|.+-
T Consensus 443 ~~~iI~RIrk~~hpsLa~~------NK~Kl~~f~~vLlq~i~~la~~ 483 (840)
T PF04147_consen 443 QPTIIQRIRKCYHPSLAEG------NKEKLQVFFGVLLQHILYLASQ 483 (840)
T ss_pred HhHHHHHHHHhCCCCCCcc------hHHHHHHHHHHHHHHHHHHhcc
Confidence 4567777776643211111 1112357888888887776553
No 51
>KOG3304 consensus Surfeit family protein 5 [General function prediction only]
Probab=30.47 E-value=73 Score=33.60 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=23.5
Q ss_pred chhhHHHHHHHHHhccC-hHHHHHHHHHHHHHHhc
Q 000682 79 SDALTYLKEVKDMFQDQ-REKYDMFLEVMKDFKAQ 112 (1353)
Q Consensus 79 ~dAl~YL~~VK~~F~d~-p~vY~eFL~IMkdfk~~ 112 (1353)
.-+-..++..+.|+.|+ ..+-+.|-+|++--|-.
T Consensus 15 ask~al~k~~~~Rl~ddIkS~~dNF~~Ii~~Akv~ 49 (148)
T KOG3304|consen 15 ASKEALLKSYNKRLKDDIKSIMDNFTEIIKTAKVE 49 (148)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHhcC
Confidence 34445566677777765 56889999998876643
No 52
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=30.38 E-value=33 Score=45.43 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=13.6
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHHHHHh
Q 000682 83 TYLKEVKDMFQDQREKYDMFLEVMKDFKA 111 (1353)
Q Consensus 83 ~YL~~VK~~F~d~p~vY~eFL~IMkdfk~ 111 (1353)
.+|..|...+.+ +. -...|++++..-.
T Consensus 25 ~~Lte~l~~~~~-~~-~~~vl~ll~~~~~ 51 (784)
T PF04931_consen 25 LALTELLSQLPE-IS-VSSVLDLLKKKLQ 51 (784)
T ss_pred HHHHHHHHhccc-CC-HHHHHHHHHHhcc
Confidence 456666666643 22 1345555555444
No 53
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=28.93 E-value=1.1e+02 Score=31.06 Aligned_cols=49 Identities=29% Similarity=0.353 Sum_probs=43.3
Q ss_pred hhhHHHHHhhcChHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccChH
Q 000682 370 FIFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMD 418 (1353)
Q Consensus 370 l~FFDKVKk~L~~~~Y~EFLKcLNLYsQeII~r~ELv~lV~~fLG~~pD 418 (1353)
...|.-.|+.+..+.=++|+.+|..|.++.|+...++.+...++.++++
T Consensus 56 ~Hi~Gyfk~~ls~~EK~~~~~~i~~yr~g~i~l~~~l~~L~~~~~ry~~ 104 (117)
T PF08349_consen 56 QHIFGYFKKKLSSEEKQHFLDLIEDYREGKIPLSVPLTLLKHLARRYPD 104 (117)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHCCC
Confidence 4567778999987777899999999999999999999999999988764
No 54
>KOG3570 consensus MAPK-activating protein DENN [Signal transduction mechanisms]
Probab=28.45 E-value=52 Score=43.35 Aligned_cols=37 Identities=16% Similarity=0.031 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHH-hhhhhccccccch
Q 000682 640 KQKQEEWTKCRSDFNKVWAEIYAK-NHYKSLDHRSFYF 676 (1353)
Q Consensus 640 KQK~eEWr~aq~e~nKvWrev~~K-NY~KSLDHqs~~F 676 (1353)
.+|+|+-++-|+.-|.-=.++.-| -.+..||-||+-+
T Consensus 903 ~~tqe~pt~Qqrs~~~seNQqflKev~~qvL~GqgVGw 940 (1588)
T KOG3570|consen 903 TVKREPPSPQGRSSNSSENQQFLKEVVHSVLDGQGVGW 940 (1588)
T ss_pred cccCCCCCccccccccchhhHHHHHHHHHHhcccccce
Confidence 345566665555433222222222 2345688888764
No 55
>cd07347 harmonin_N_like N-terminal protein-binding module of harmonin and similar domains. This domain is found in harmonin, and similar proteins such as delphilin, and whirlin. These are postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold proteins. Harmonin and whirlin are organizers of the Usher protein network of the inner ear and the retina, delphilin is found at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain is found in either one or two copies. Harmonin contains a single copy, which is found at its N-terminus and binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network. Whirlin contains two copies of the harmonin_N_like domain; the first of these has been assayed for interaction with the cytoplasmic domain of cadherin 23 and no interaction could be detected.
Probab=26.16 E-value=2.1e+02 Score=27.88 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=48.5
Q ss_pred hhhHHHHHhhcChHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccC--hHHHHHHhhhhcc
Q 000682 370 FIFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKY--MDLMDEFNHFFER 429 (1353)
Q Consensus 370 l~FFDKVKk~L~~~~Y~EFLKcLNLYsQeII~r~ELv~lV~~fLG~~--pDLm~~Fk~FLg~ 429 (1353)
-.|.++|...|....-+.|..+|+.|.++- +-.+||.-+..+|... -.|+.+...+|..
T Consensus 6 r~f~~q~~~LL~~~Er~~~~~~L~~Y~~~~-~Vd~LV~~L~~vLdtPaK~~Ll~~iR~lIp~ 66 (78)
T cd07347 6 REFSQQVDHLLTDAEREQVTRALERYHQER-NVDDLVRDLYLVLDTPAKLPLLQFLRQVIPP 66 (78)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHcCcHhHHHHHHHHHHHcCH
Confidence 358999999999444778999999999999 9999999999999652 2677777777754
No 56
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=25.77 E-value=67 Score=36.51 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=14.8
Q ss_pred cChHHHHHHHHHHHHHHhcCCChhhHHHH
Q 000682 94 DQREKYDMFLEVMKDFKAQRTDTAGVIAR 122 (1353)
Q Consensus 94 d~p~vY~eFL~IMkdfk~~rid~~gVi~r 122 (1353)
+.|.++.-|-.+=+| .+++|...++..-
T Consensus 55 ~~~~~~~~f~~vD~d-~sg~i~~~eLq~a 82 (221)
T KOG0037|consen 55 TFPQLAGWFQSVDRD-RSGRILAKELQQA 82 (221)
T ss_pred ccHHHHHHHHhhCcc-ccccccHHHHHHH
Confidence 356666666555333 2345666555543
No 57
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=24.96 E-value=57 Score=39.48 Aligned_cols=20 Identities=20% Similarity=0.409 Sum_probs=12.2
Q ss_pred hhHHhhhhhcCCccccccCC
Q 000682 131 NNLIFGFNTFLPKGYEITLD 150 (1353)
Q Consensus 131 pdLI~GFN~FLP~gy~I~l~ 150 (1353)
-||+.+...|=|--|-..+|
T Consensus 46 adl~eal~~fG~i~yvt~~P 65 (494)
T KOG1456|consen 46 ADLVEALSNFGPIAYVTCMP 65 (494)
T ss_pred hHHHHHHhcCCceEEEEecc
Confidence 45666666666666665554
No 58
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=24.19 E-value=1.2e+02 Score=39.79 Aligned_cols=6 Identities=17% Similarity=0.052 Sum_probs=2.3
Q ss_pred ChhHHh
Q 000682 130 HNNLIF 135 (1353)
Q Consensus 130 hpdLI~ 135 (1353)
||-|..
T Consensus 197 ~p~~~~ 202 (828)
T PF04094_consen 197 SPFLFV 202 (828)
T ss_pred CchHhh
Confidence 343333
No 59
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=24.18 E-value=1.3e+02 Score=38.15 Aligned_cols=6 Identities=67% Similarity=1.364 Sum_probs=3.4
Q ss_pred HHHHHH
Q 000682 186 FLEILN 191 (1353)
Q Consensus 186 FLeIL~ 191 (1353)
||++|+
T Consensus 417 FL~VLn 422 (574)
T PF07462_consen 417 FLDVLN 422 (574)
T ss_pred HHHHHh
Confidence 565554
No 60
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=23.80 E-value=69 Score=38.85 Aligned_cols=13 Identities=15% Similarity=0.347 Sum_probs=6.2
Q ss_pred CHHHHHHHHHHHh
Q 000682 401 KRNDLQNLVTDLL 413 (1353)
Q Consensus 401 ~r~ELv~lV~~fL 413 (1353)
++++-+.-+.+||
T Consensus 360 SkQ~~v~~~~pfl 372 (494)
T KOG1456|consen 360 SKQNFVSPVQPFL 372 (494)
T ss_pred ccccccccCCcee
Confidence 4444444444444
No 61
>PRK09807 hypothetical protein; Provisional
Probab=23.52 E-value=73 Score=32.60 Aligned_cols=52 Identities=35% Similarity=0.386 Sum_probs=41.4
Q ss_pred HHHhccChHHHHHHHHHHHHHHhc------------CCChhhHHHHHHHHhccChhHHhhhhhc
Q 000682 89 KDMFQDQREKYDMFLEVMKDFKAQ------------RTDTAGVIARVKDLFKGHNNLIFGFNTF 140 (1353)
Q Consensus 89 K~~F~d~p~vY~eFL~IMkdfk~~------------rid~~gVi~rV~~LFkghpdLI~GFN~F 140 (1353)
-.-|..+|-....||.+=.||.+- .+|++-.|--|..||.|.|.||..--.|
T Consensus 3 aalfgcqpylvqrflavdndfaailkgngqhaavdfavdiavaipvvqtlfngqpqlisqamkf 66 (161)
T PRK09807 3 AALFGCQPYLVQRFLAVDNDFAAILKGNGQHAAVDFAVDIAVAIPVVQTLFNGQPQLISQAMKF 66 (161)
T ss_pred hhhhcCcHHHHHHHHHhcchHHHHHcCCCceeeeeeeeeeeeehHHHHHHhCCChHHHHHhhhh
Confidence 456888999999999998888741 2567777999999999999999864333
No 62
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=23.49 E-value=1.1e+02 Score=34.18 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=11.5
Q ss_pred ChhHHHHHhhhCCCCCC
Q 000682 214 HADLLEEFTRFLPDTSA 230 (1353)
Q Consensus 214 hPDLLeEF~~FLP~~~~ 230 (1353)
.||-|.=..+|||....
T Consensus 128 ~p~KllPl~RFLP~p~~ 144 (215)
T KOG3262|consen 128 DPDKLLPLDRFLPQPVG 144 (215)
T ss_pred cccccCcHhhcCCCCCC
Confidence 45666667788888733
No 63
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=23.28 E-value=84 Score=41.06 Aligned_cols=14 Identities=21% Similarity=0.468 Sum_probs=9.9
Q ss_pred cccccccCCccccc
Q 000682 1120 KPLAKFVPATSVEE 1133 (1353)
Q Consensus 1120 kpla~~~~~~~~~~ 1133 (1353)
.--.|||||++..+
T Consensus 293 ~s~sKYvPPslRkk 306 (822)
T KOG2141|consen 293 NSSSKYVPPSLRKK 306 (822)
T ss_pred ccccccCCHHHHHH
Confidence 33469999987654
No 64
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=23.10 E-value=84 Score=35.76 Aligned_cols=16 Identities=25% Similarity=0.607 Sum_probs=8.8
Q ss_pred hhHHHHHHHHHHHhhc
Q 000682 161 EFEEAITFVNKIKKRF 176 (1353)
Q Consensus 161 ef~~Ai~FVnKIK~RF 176 (1353)
+|..=.+||+.-++-|
T Consensus 115 EF~~Lw~~i~~Wr~vF 130 (221)
T KOG0037|consen 115 EFKALWKYINQWRNVF 130 (221)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555556666655544
No 65
>PF04228 Zn_peptidase: Putative neutral zinc metallopeptidase; InterPro: IPR007343 Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=21.91 E-value=43 Score=39.49 Aligned_cols=26 Identities=50% Similarity=1.007 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000682 43 GGAGGGGGAGAGGGSGVGGGGGGMTA 68 (1353)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (1353)
+|.+||++.|||++...+||++|.++
T Consensus 16 rg~~~~~~~ggg~~~~~~gg~~g~~~ 41 (292)
T PF04228_consen 16 RGSSGGGGRGGGGRGIAIGGGGGIGG 41 (292)
T ss_pred cccCCCCCCCCCcccccccccchHHH
No 66
>KOG3590 consensus Protein kinase A anchoring protein [Signal transduction mechanisms]
Probab=21.70 E-value=1.6e+02 Score=36.40 Aligned_cols=16 Identities=6% Similarity=0.160 Sum_probs=8.5
Q ss_pred HHhccChHHHHHHHHH
Q 000682 90 DMFQDQREKYDMFLEV 105 (1353)
Q Consensus 90 ~~F~d~p~vY~eFL~I 105 (1353)
++.-.+|-+..=|+.-
T Consensus 116 ~~il~D~~~LSYFiQY 131 (602)
T KOG3590|consen 116 EQVLHDTIVLSYFIQY 131 (602)
T ss_pred HHHhccchHHHHHHHH
Confidence 4444566665555543
No 67
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=21.66 E-value=1.5e+02 Score=36.92 Aligned_cols=16 Identities=19% Similarity=0.447 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHHHhhc
Q 000682 161 EFEEAITFVNKIKKRF 176 (1353)
Q Consensus 161 ef~~Ai~FVnKIK~RF 176 (1353)
.++-...+.+.|+.|-
T Consensus 162 ~l~~~RTlr~al~Rri 177 (421)
T PF04285_consen 162 NLDKKRTLREALKRRI 177 (421)
T ss_pred HHHHHHHhhHHHHHHH
Confidence 4455555555555544
No 68
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=21.46 E-value=1.6e+02 Score=27.06 Aligned_cols=56 Identities=13% Similarity=0.238 Sum_probs=47.6
Q ss_pred hHHHHHhhcC---hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccChHHHHHHhhhh
Q 000682 372 FCDKVKEKLC---SDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFF 427 (1353)
Q Consensus 372 FFDKVKk~L~---~~~Y~EFLKcLNLYsQeII~r~ELv~lV~~fLG~~pDLm~~Fk~FL 427 (1353)
|.+++...++ -..|..|.+-|.-|+.-+.+|..|+..+..+-..|.+|-.=.+++|
T Consensus 2 yW~~~~~vip~~~~~~W~~L~~~l~rY~~vL~~R~~l~~e~~~L~~qN~eLr~lLkqYl 60 (60)
T PF14775_consen 2 YWERLANVIPDEKIRLWDALENFLKRYNKVLLDRAALIQEKESLEQQNEELRSLLKQYL 60 (60)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5666777776 6789999999999999999999999999998888999877776654
No 69
>PF12083 DUF3560: Domain of unknown function (DUF3560); InterPro: IPR021944 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain has a conserved GHHSE sequence motif.
Probab=21.28 E-value=3e+02 Score=29.00 Aligned_cols=65 Identities=20% Similarity=0.263 Sum_probs=49.2
Q ss_pred cCCCCcccccchhHHHHHHHHhhC--CCHHHHHHHHH-----------hCcCcchhHHHHHHHHHHHHHHHHHHHhhH
Q 000682 591 LETPFHLKDHFSALNLRCIERLYG--DHGLDVMDILR-----------KNPAIALPVMLTRLKQKQEEWTKCRSDFNK 655 (1353)
Q Consensus 591 ~~~~~~L~~~L~~I~~R~I~rIYG--d~g~eVid~L~-----------knP~~AlPVVL~RLKQK~eEWr~aq~e~nK 655 (1353)
+..||.++-|+..=|+|.|+|+-. +++.+..+.-. .--..-.|.+|.||+.+..+.+..|+.+..
T Consensus 41 ~GQPIlVGHHSE~R~Rr~~eR~~~~m~kav~~~~kA~y~~~rA~aa~~~~i~~~~Pda~~ri~~~la~~r~~q~~mk~ 118 (126)
T PF12083_consen 41 FGQPILVGHHSEKRHRRYRERIHNRMGKAVEAMDKAEYYEQRAAAAGRTAISSDDPDALRRIKKKLAELRASQRRMKA 118 (126)
T ss_pred CCCCeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888999999999999987 45555443322 112334688899999999999999998754
No 70
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=20.56 E-value=2.6e+02 Score=37.25 Aligned_cols=7 Identities=14% Similarity=0.895 Sum_probs=3.5
Q ss_pred hHHHHHh
Q 000682 372 FCDKVKE 378 (1353)
Q Consensus 372 FFDKVKk 378 (1353)
-|+-||+
T Consensus 807 ACEE~rk 813 (1102)
T KOG1924|consen 807 ACEELRK 813 (1102)
T ss_pred HHHHHHh
Confidence 3555554
No 71
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=20.51 E-value=1e+02 Score=37.69 Aligned_cols=14 Identities=14% Similarity=0.328 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHhhc
Q 000682 163 EEAITFVNKIKKRF 176 (1353)
Q Consensus 163 ~~Ai~FVnKIK~RF 176 (1353)
+--..+.+.+|.|.
T Consensus 160 ~~~RT~r~al~Rri 173 (371)
T TIGR02877 160 DKKRTVIEALKRNQ 173 (371)
T ss_pred hHHHHHHHHHHHHh
Confidence 33344444555443
No 72
>PF08963 DUF1878: Protein of unknown function (DUF1878); InterPro: IPR015058 This family consist of hypothetical bacterial proteins. ; PDB: 1SED_B.
Probab=20.43 E-value=1.1e+02 Score=31.66 Aligned_cols=63 Identities=21% Similarity=0.445 Sum_probs=45.5
Q ss_pred hcchhhhHHHHHhhcC---hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHh--ccChHHHHHHhhhhc
Q 000682 366 YNQGFIFCDKVKEKLC---SDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLL--GKYMDLMDEFNHFFE 428 (1353)
Q Consensus 366 ~~eEl~FFDKVKk~L~---~~~Y~EFLKcLNLYsQeII~r~ELv~lV~~fL--G~~pDLm~~Fk~FLg 428 (1353)
..+=+..|+++.+.+. .+-|-.|-.+|..|...+..+=++-.-+..++ |-+++||.+|+.++.
T Consensus 43 vee~~~lce~l~ee~~~QKAeG~v~F~pLl~~F~~~L~~~L~~~eti~Al~~Qgl~~~lM~ef~~~i~ 110 (113)
T PF08963_consen 43 VEEFLRLCEELSEELEEQKAEGFVIFDPLLAQFAGMLHEKLDVHETIEALLRQGLFQPLMTEFKKIIK 110 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHS-TTS-HHHHHHHHHHTT-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHhhcCccCCHHHHHHHHHHccCcHHHHHHHHHHHh
Confidence 3455788999999887 66688999999999988877767766677777 569999999999874
No 73
>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]
Probab=20.14 E-value=1.9e+02 Score=30.79 Aligned_cols=50 Identities=24% Similarity=0.385 Sum_probs=36.5
Q ss_pred HHHHHHHhhC---C-CHHHHHHHHHh---CcCcchhHHHHHHHHHHHHHHHHHHHhh
Q 000682 605 NLRCIERLYG---D-HGLDVMDILRK---NPAIALPVMLTRLKQKQEEWTKCRSDFN 654 (1353)
Q Consensus 605 ~~R~I~rIYG---d-~g~eVid~L~k---nP~~AlPVVL~RLKQK~eEWr~aq~e~n 654 (1353)
.++|.+.|=| + ..-+||-.|.. |-..++--+..-|.||-.|+.+++.+-|
T Consensus 61 ~RKCfRmIgGvLVErTVkeVlP~L~~nke~i~~~i~~l~~qL~~k~kElnkfk~~hk 117 (140)
T KOG4098|consen 61 TRKCFRMIGGVLVERTVKEVLPILQTNKENIEKVIKKLTDQLVQKGKELNKFKKDHK 117 (140)
T ss_pred hhHHHHHhccchhhhhHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4788888877 3 45578877775 4556777778888888888887776654
Done!