Query         000682
Match_columns 1353
No_of_seqs    376 out of 641
Neff          4.8 
Searched_HMMs 29240
Date          Tue Mar 26 15:57:01 2013
Command       hhsearch -i /local_scratch/syshi/lefta3m/000682.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_455-459//hhsearch_pdb/000682hhsearch_pdb 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2czy_A Paired amphipathic heli   1.0       1       1  187.9   8.8   76   75-150     1-76  (77)
  2 2cr7_A Paired amphipathic heli   1.0       1       1  183.2   8.8   76   71-146     3-78  (80)
  3 2f05_A Paired amphipathic heli   1.0       1       1  175.5   6.5   80   73-152     2-91  (105)
  4 2ld7_B Paired amphipathic heli   1.0       1       1  169.7   7.3   72  361-432     3-75  (75)
  5 1e91_A Paired amphipathic heli   1.0       1       1  169.4   7.1   74   73-146     2-85  (85)
  6 1g1e_B SIN3A; four-helix bundl   1.0       1       1  157.6   6.4   74   71-144     3-89  (89)
  7 2f05_A Paired amphipathic heli   1.0       1       1  152.7   7.9   77  157-233     2-88  (105)
  8 1e91_A Paired amphipathic heli   1.0       1       1  151.9   9.3   74  157-230     2-85  (85)
  9 1g1e_B SIN3A; four-helix bundl   1.0       1       1  151.8   8.0   73  156-228     4-89  (89)
 10 2cr7_A Paired amphipathic heli   1.0       1       1  144.7   7.3   74  157-230     5-78  (80)

No 1  
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=1.00  E-value=1  Score=187.88  Aligned_cols=76  Identities=51%  Similarity=0.857  Sum_probs=74.5

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf             6551036678999998711696889999999999883179936699999997306925885532039843222379
Q 000682           75 KLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEITLD  150 (1353)
Q Consensus        75 ~l~~~dAl~YL~~VK~~F~d~p~vY~eFLeIMkdfk~~~idt~gVi~rV~~LFkghpdLI~GFNtFLP~gy~I~l~  150 (1353)
                      +++++||++||++||.+|+++|++|.+||+||++|+++++|+++|++||++||+||||||.|||+|||+||+|+|+
T Consensus         1 ~l~~~dA~~yl~~VK~~F~~~p~~Y~~FL~im~~~k~~~~~~~~v~~rv~~Lf~~hpdLi~gFn~FLP~~~~i~~~   76 (77)
T 2czy_A            1 PVHVEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPLGYRIDIP   76 (77)
T ss_dssp             CCSHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTTTCHHHHHHHHTTSCSSSCCCCC
T ss_pred             CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEECCC
T ss_conf             9878999999999999985685999999999999987699899999999999768879999999888997640598


No 2  
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=1.00  E-value=1  Score=183.15  Aligned_cols=76  Identities=50%  Similarity=0.797  Sum_probs=73.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCC
Q ss_conf             8876655103667899999871169688999999999988317993669999999730692588553203984322
Q 000682           71 GTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYE  146 (1353)
Q Consensus        71 ~~~~~l~~~dAl~YL~~VK~~F~d~p~vY~eFLeIMkdfk~~~idt~gVi~rV~~LFkghpdLI~GFNtFLP~gy~  146 (1353)
                      ...++++++||++||++||.+|+++|++|.+||+||++|+++++++++||+||++||+||||||.|||+|||+||.
T Consensus         3 s~~~~~~~~dA~~yl~~VK~rF~~~p~~Y~~FL~im~~fk~~~~~~~~v~~rV~~Lf~~hpdLi~gFn~FLP~~~~   78 (80)
T 2cr7_A            3 SGSSGVHVEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPSGPS   78 (80)
T ss_dssp             CCCCCCCSCCSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHGGGCHHHHHHHHHHSSCSSS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC
T ss_conf             8889988999999999999998258599999999999998669989999999999986788999999988869878


No 3  
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=1.00  E-value=1  Score=175.47  Aligned_cols=80  Identities=28%  Similarity=0.593  Sum_probs=74.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHH----------HHHHHHHHHHCCCHHHHHHHHHCCC
Q ss_conf             766551036678999998711696889999999999883179936----------6999999973069258855320398
Q 000682           73 SQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTA----------GVIARVKDLFKGHNNLIFGFNTFLP  142 (1353)
Q Consensus        73 ~~~l~~~dAl~YL~~VK~~F~d~p~vY~eFLeIMkdfk~~~idt~----------gVi~rV~~LFkghpdLI~GFNtFLP  142 (1353)
                      .++++++||++||++||.||+++|++|.+||+||++|+.+++|++          +|+++|+.||+||||||.|||+|||
T Consensus         2 ~~~~~~~dA~~YvnkVK~rF~d~p~vY~~FL~IL~~yk~~~~d~~g~~~~~~s~~eV~~~V~~LF~~hpDLl~eFn~FLP   81 (105)
T 2f05_A            2 SDSVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLP   81 (105)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSSSSSSSCCCCHHHHHHHHHHHTTTCHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf             99876899999999999998139499999999999998645665443223576999999999997669899999998787


Q ss_pred             CCCCCCCCCC
Q ss_conf             4322237998
Q 000682          143 KGYEITLDED  152 (1353)
Q Consensus       143 ~gy~I~l~~d  152 (1353)
                      ++|+|.++.+
T Consensus        82 ~~~~~~~~~~   91 (105)
T 2f05_A           82 EAKRSLFTGN   91 (105)
T ss_dssp             GGGC------
T ss_pred             CCCCCCCCCC
T ss_conf             7235688996


No 4  
>2ld7_B Paired amphipathic helix protein SIN3A; transcription; NMR {Mus musculus}
Probab=1.00  E-value=1  Score=169.70  Aligned_cols=72  Identities=35%  Similarity=0.636  Sum_probs=68.6

Q ss_pred             HHHHHHCCHHHHHHHHHHHCC-HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf             553210002136999985229-698999999998773478999899999999730185789999663113454
Q 000682          361 ALKSIYNQGFIFCDKVKEKLC-SDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFFERCEN  432 (1353)
Q Consensus       361 ~~k~~~~eE~~FFdKVKk~L~-~~~Y~eFLKcLnLYsQeIIsr~ELv~lV~~lLG~~pDLl~~Fk~FLg~~e~  432 (1353)
                      +.|+++.+|++||+|||++|+ +++|++||||||||+|+||+++||+.+|.+|||+|||||+||+.||+|||+
T Consensus         3 ~~k~~~~de~~Ff~kVK~~l~~~~~Y~eFLk~lnlf~q~~Id~~eLv~~V~~~lg~~pdL~~~Fk~Fl~~~e~   75 (75)
T 2ld7_B            3 ASKHGVGTESLFFDKVRKALRSAEAYENFLRCLVIFNQEVISRAELVQLVSPFLGKFPELFNWFKNFLGYKES   75 (75)
T ss_dssp             STTTTSSHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHTTCHHHHHHHHHHHTCCCC
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC
T ss_conf             2000638899999999998289778999999999860068679999999999984488999999998287888


No 5  
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=1.00  E-value=1  Score=169.44  Aligned_cols=74  Identities=31%  Similarity=0.673  Sum_probs=68.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHH----------HHHHHHHHHCCCHHHHHHHHHCCC
Q ss_conf             7665510366789999987116968899999999998831799366----------999999973069258855320398
Q 000682           73 SQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAG----------VIARVKDLFKGHNNLIFGFNTFLP  142 (1353)
Q Consensus        73 ~~~l~~~dAl~YL~~VK~~F~d~p~vY~eFLeIMkdfk~~~idt~g----------Vi~rV~~LFkghpdLI~GFNtFLP  142 (1353)
                      .++++++||++||++||.+|+++|++|.+||+||++|+.+++|++|          |+++|+.||+||||||.|||+|||
T Consensus         2 ~~~~~~~~A~~yv~kVK~rF~~~p~~Y~~FL~il~~yk~~~~d~~~~~~~~~s~~eV~~~V~~Lf~~hpDLl~~F~~FLP   81 (85)
T 1e91_A            2 SDSVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLP   81 (85)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTCSSSCCCSSCCCHHHHHHHHHHHTSSCHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf             99764999999999999998049699999999999998735565542213575999999999998669999999997786


Q ss_pred             CCCC
Q ss_conf             4322
Q 000682          143 KGYE  146 (1353)
Q Consensus       143 ~gy~  146 (1353)
                      ++|+
T Consensus        82 ~~~~   85 (85)
T 1e91_A           82 EAKR   85 (85)
T ss_dssp             CCCC
T ss_pred             CCCC
T ss_conf             8669


No 6  
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=1.00  E-value=1  Score=157.62  Aligned_cols=74  Identities=30%  Similarity=0.603  Sum_probs=56.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             8876655103667899999871169688999999999988317-------------993669999999730692588553
Q 000682           71 GTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQR-------------TDTAGVIARVKDLFKGHNNLIFGF  137 (1353)
Q Consensus        71 ~~~~~l~~~dAl~YL~~VK~~F~d~p~vY~eFLeIMkdfk~~~-------------idt~gVi~rV~~LFkghpdLI~GF  137 (1353)
                      .+.+++++++|++||++||.||+++|++|.+||+||++|+.++             |++.+|+++|+.||+||||||.||
T Consensus         3 ~~~~~~~~~~A~~YvnkVK~rF~~~p~~Y~~FL~IL~~y~~~~~~~~~~~~~~~~~~~~~~V~~~V~~LF~~h~DLl~~F   82 (89)
T 1g1e_B            3 QNNQPVEFNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQEDLLSEF   82 (89)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCSCCHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             77899878999999999999985593999999999999986567510000112235539999999999985499999999


Q ss_pred             HHCCCCC
Q ss_conf             2039843
Q 000682          138 NTFLPKG  144 (1353)
Q Consensus       138 NtFLP~g  144 (1353)
                      |+|||++
T Consensus        83 ~~FLP~~   89 (89)
T 1g1e_B           83 GQFLPDA   89 (89)
T ss_dssp             HTTCCCC
T ss_pred             HHHCCCC
T ss_conf             9878698


No 7  
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=1.00  E-value=1  Score=152.72  Aligned_cols=77  Identities=48%  Similarity=0.853  Sum_probs=71.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHCCCHHHHHHHHHHCC
Q ss_conf             875216899999999986407883638999999997762277----------5787999999831049359999713099
Q 000682          157 KKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHK----------DINEVYSEVASLFEDHADLLEEFTRFLP  226 (1353)
Q Consensus       157 ~~~vef~~Ai~FVnKIK~RF~~dP~vYk~FLeIL~~yk~~~~----------si~eV~~qVa~LFkghPDLL~eF~~FLP  226 (1353)
                      .++++|++|++|||+||.||+++|++|++||+||++|+++++          ++.+||.+|+.||+||||||.+|++|||
T Consensus         2 ~~~~~~~dA~~YvnkVK~rF~d~p~vY~~FL~IL~~yk~~~~d~~g~~~~~~s~~eV~~~V~~LF~~hpDLl~eFn~FLP   81 (105)
T 2f05_A            2 SDSVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLP   81 (105)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSSSSSSSCCCCHHHHHHHHHHHTTTCHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf             99876899999999999998139499999999999998645665443223576999999999997669899999998787


Q ss_pred             CCCCCCC
Q ss_conf             9977866
Q 000682          227 DTSATSL  233 (1353)
Q Consensus       227 d~~~~~~  233 (1353)
                      +......
T Consensus        82 ~~~~~~~   88 (105)
T 2f05_A           82 EAKRSLF   88 (105)
T ss_dssp             GGGC---
T ss_pred             CCCCCCC
T ss_conf             7235688


No 8  
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=1.00  E-value=1  Score=151.91  Aligned_cols=74  Identities=50%  Similarity=0.884  Sum_probs=69.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC----------CCHHHHHHHHHHHHCCCHHHHHHHHHHCC
Q ss_conf             87521689999999998640788363899999999776227----------75787999999831049359999713099
Q 000682          157 KKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEH----------KDINEVYSEVASLFEDHADLLEEFTRFLP  226 (1353)
Q Consensus       157 ~~~vef~~Ai~FVnKIK~RF~~dP~vYk~FLeIL~~yk~~~----------~si~eV~~qVa~LFkghPDLL~eF~~FLP  226 (1353)
                      .++++|++|++|||+||.||+++|++|++||+||++|++++          +++.+||.+|+.||+||||||.||+.|||
T Consensus         2 ~~~~~~~~A~~yv~kVK~rF~~~p~~Y~~FL~il~~yk~~~~d~~~~~~~~~s~~eV~~~V~~Lf~~hpDLl~~F~~FLP   81 (85)
T 1e91_A            2 SDSVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLP   81 (85)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTCSSSCCCSSCCCHHHHHHHHHHHTSSCHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf             99764999999999999998049699999999999998735565542213575999999999998669999999997786


Q ss_pred             CCCC
Q ss_conf             9977
Q 000682          227 DTSA  230 (1353)
Q Consensus       227 d~~~  230 (1353)
                      +.+.
T Consensus        82 ~~~~   85 (85)
T 1e91_A           82 EAKR   85 (85)
T ss_dssp             CCCC
T ss_pred             CCCC
T ss_conf             8669


No 9  
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=1.00  E-value=1  Score=151.84  Aligned_cols=73  Identities=52%  Similarity=0.951  Sum_probs=68.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCH-------------HHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             987521689999999998640788363899999999776227757-------------8799999983104935999971
Q 000682          156 PKKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDI-------------NEVYSEVASLFEDHADLLEEFT  222 (1353)
Q Consensus       156 p~~~vef~~Ai~FVnKIK~RF~~dP~vYk~FLeIL~~yk~~~~si-------------~eV~~qVa~LFkghPDLL~eF~  222 (1353)
                      ..++++|++|++||||||+||+++|++|++||+||++|+++++++             .+||.+|+.||+||||||.+|+
T Consensus         4 ~~~~~~~~~A~~YvnkVK~rF~~~p~~Y~~FL~IL~~y~~~~~~~~~~~~~~~~~~~~~~V~~~V~~LF~~h~DLl~~F~   83 (89)
T 1g1e_B            4 NNQPVEFNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQEDLLSEFG   83 (89)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCSCCHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             78998789999999999999855939999999999999865675100001122355399999999999854999999999


Q ss_pred             HHCCCC
Q ss_conf             309999
Q 000682          223 RFLPDT  228 (1353)
Q Consensus       223 ~FLPd~  228 (1353)
                      .|||++
T Consensus        84 ~FLP~~   89 (89)
T 1g1e_B           84 QFLPDA   89 (89)
T ss_dssp             TTCCCC
T ss_pred             HHCCCC
T ss_conf             878698


No 10 
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=1.00  E-value=1  Score=144.65  Aligned_cols=74  Identities=34%  Similarity=0.669  Sum_probs=70.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC
Q ss_conf             87521689999999998640788363899999999776227757879999998310493599997130999977
Q 000682          157 KKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSA  230 (1353)
Q Consensus       157 ~~~vef~~Ai~FVnKIK~RF~~dP~vYk~FLeIL~~yk~~~~si~eV~~qVa~LFkghPDLL~eF~~FLPd~~~  230 (1353)
                      .+++++++|++||++||.||+++|++|++||+||++|+++.+++.+||.+|+.||+||||||.+|+.|||....
T Consensus         5 ~~~~~~~dA~~yl~~VK~rF~~~p~~Y~~FL~im~~fk~~~~~~~~v~~rV~~Lf~~hpdLi~gFn~FLP~~~~   78 (80)
T 2cr7_A            5 SSGVHVEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPSGPS   78 (80)
T ss_dssp             CCCCCSCCSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHGGGCHHHHHHHHHHSSCSSS
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC
T ss_conf             89988999999999999998258599999999999998669989999999999986788999999988869878


Done!