Your job contains 1 sequence.
>000683
MLRLSSTVPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGL
KNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLA
LSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQI
LSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMN
ELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCST
MSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQ
EPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQAN
HAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFA
VFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEM
IPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPF
HHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEAADSS
TSEGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEY
RFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALE
QFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVS
SQATSGNGEVSGSGITQLGQQLSSQIQLQQRSESVVDDRHKVSAASSSDMKPLLSSIGQP
SSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRE
TPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNF
HDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIG
RNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLA
EIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQ
LVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGI
SDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMD
RAIKEIVSGIVQRSVSIATQTTKELVLKVCFLS
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 000683
(1353 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-040915-1 - symbol:cnot1 "CCR4-NOT transcrip... 586 6.4e-140 4
MGI|MGI:2442402 - symbol:Cnot1 "CCR4-NOT transcription co... 622 2.3e-138 4
UNIPROTKB|G3V7M0 - symbol:Cnot1 "RCG39079" species:10116 ... 622 2.3e-138 4
UNIPROTKB|F1MHU9 - symbol:CNOT1 "Uncharacterized protein"... 620 3.9e-138 4
UNIPROTKB|A5YKK6 - symbol:CNOT1 "CCR4-NOT transcription c... 621 3.9e-138 4
UNIPROTKB|F1RFU3 - symbol:CNOT1 "Uncharacterized protein"... 620 6.4e-138 4
UNIPROTKB|E1BXD4 - symbol:LOC100858397 "Uncharacterized p... 550 1.7e-129 4
DICTYBASE|DDB_G0276029 - symbol:DDB_G0276029 "putative CC... 661 7.5e-125 5
FB|FBgn0085436 - symbol:Not1 "Not1" species:7227 "Drosoph... 611 1.2e-109 5
POMBASE|SPAC20G8.06 - symbol:not1 "CCR4-Not complex subun... 475 1.1e-79 3
ASPGD|ASPL0000078074 - symbol:AN4965 species:162425 "Emer... 539 4.9e-77 3
WB|WBGene00002845 - symbol:let-711 species:6239 "Caenorha... 527 1.0e-72 4
GENEDB_PFALCIPARUM|PF11_0049 - symbol:PF11_0049 "hypothet... 445 1.8e-67 3
UNIPROTKB|Q8IIW4 - symbol:PF11_0049 "NOT family protein, ... 445 1.8e-67 3
CGD|CAL0001252 - symbol:CDC39 species:5476 "Candida albic... 410 1.1e-58 3
UNIPROTKB|Q59R01 - symbol:CDC39 "Potential mRNA deadenyla... 410 1.1e-58 3
SGD|S000000689 - symbol:CDC39 "Component of the CCR4-NOT ... 400 5.5e-57 5
>ZFIN|ZDB-GENE-040915-1 [details] [associations]
symbol:cnot1 "CCR4-NOT transcription complex, subunit
1" species:7955 "Danio rerio" [GO:0005575 "cellular_component"
evidence=ND] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] ZFIN:ZDB-GENE-040915-1
InterPro:IPR007196 InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054
GeneTree:ENSGT00390000014869 EMBL:CU468035 IPI:IPI00829204
Ensembl:ENSDART00000017536 ArrayExpress:F1QAM0 Bgee:F1QAM0
Uniprot:F1QAM0
Length = 2375
Score = 586 (211.3 bits), Expect = 6.4e-140, Sum P(4) = 6.4e-140
Identities = 130/362 (35%), Positives = 207/362 (57%)
Query: 882 VSAASSSDMKPLLSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPSRGVTST 941
++ A + P GQ S++ T++ ++ P + P + V +
Sbjct: 1009 LAQAQAQSQPPKAPQPGQASTLVTTATTTTTAAKTTTITRPTAVG-------PKKDVPPS 1061
Query: 942 KFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQY 1001
+ NI+TL+ A ++ E +E P + VQ+KI+FI NN+S N+ K +E E +KE++
Sbjct: 1062 I--NTTNIDTLLVATDQTERIVEPPEN-VQEKIAFIFNNLSQSNMSQKVEELKETVKEEF 1118
Query: 1002 YPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSS 1061
PW +QY+VMKR SIEPNFH LY FLD + + + ++ TY N KVLL S+ ++
Sbjct: 1119 MPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANF 1178
Query: 1062 EERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPC 1119
+RSLLKNLG WLG +T+ +N+ + +++ KSL++EAY KG ++ V+PF +K+LE
Sbjct: 1179 SDRSLLKNLGHWLGMITLAKNKPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESS 1238
Query: 1120 QSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLL--K 1177
S+ ++P NPWTM I+ +LAE++ +LK+NLKF+IEVL KNL +D+ D+ P +LL K
Sbjct: 1239 LRSVIFRPQNPWTMGIMNVLAELHQEHDLKLNLKFEIEVLCKNLSMDITDLKPGNLLRDK 1298
Query: 1178 DRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHV-DLPLDVASPPNSGGPTHLLS 1236
D+ + +E K+ + +L+P V A P P + +G PT S
Sbjct: 1299 DKLKTLEEQLSAPKKETKPPE-ELLPIVTTADSVPFTAAPSTPATTTACTATGPPTPQFS 1357
Query: 1237 QY 1238
+
Sbjct: 1358 YH 1359
Score = 499 (180.7 bits), Expect = 6.4e-140, Sum P(4) = 6.4e-140
Identities = 157/553 (28%), Positives = 268/553 (48%)
Query: 71 SVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDAL 130
S Y +D P + +S+K + L LS VL LS + + +GLALS+S N D
Sbjct: 89 STLCYAIDNPLH---YQKSLKPSP---HLFTQLSKVLKLSKVQEVILGLALSNSSNADLR 142
Query: 131 MCGKNFCMAQIERLCANPVPM----NSAEQIQNI-----------IMFLQR-SSDLSKH- 173
F ++ L + V N Q+I ++F Q+ SS + +
Sbjct: 143 GFAAQFVKQKLPDLLRSYVDADLGGNQEGGFQDIAIEVLHLLLSHLLFGQKGSSGVGQEQ 202
Query: 174 VDSLMQILSLLQSKDHTQFVLNPVL-PDELHDATSLRDLDLFHECRDDDFDDILAEMEKE 232
+D+ ++ L ++ VL P+L PD+ RD+ L D D L + E
Sbjct: 203 IDAFLKTLCRDFPQERCPVVLAPLLYPDK-------RDI-LMDRILPDSGD--LNKTMME 252
Query: 233 MSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLS---RILGAIARTHAGLEDNQNTF 289
S+ D M E+GYG A +C+ I+ + + E+T S R+LG +ARTH+GL D +
Sbjct: 253 SSLADFMQEVGYGFCASLEECRNIILQYG-VREVTASQVARVLGMMARTHSGLSDGIS-L 310
Query: 290 STFTLALGCSTM-SDLPPLS----SWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPT 344
T T +G + SD S +WNV+VL+ +K++ PN N+ V LD+ GF I
Sbjct: 311 QTITNPVGGGGIWSDGKDKSDSSQAWNVEVLIDVVKEVNPNLNFKEVTYELDHPGFLIRD 370
Query: 345 EEAFSFFM-SVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQL 403
+ + + + E FP+ + WK+ EGQLSF+++++ SP EVF FA
Sbjct: 371 SKGLQIVVYGIQRGLGMEVFPVDLIYRP-WKHAEGQLSFIQHSLLSP-EVFCFADYPCHT 428
Query: 404 PYVDAVPGLKLQSGQANHAWXXXXXXXXXXXXSEMGHASFARSMLEYPLKQCPEMLLLGM 463
+D + + W SE+GH + + +P+K CP+ML+L +
Sbjct: 429 VAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGHYEQVKQLFSFPIKHCPDMLVLAL 488
Query: 464 AHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHI-WH---VNPNI---VLRGFVD---- 512
I+T+++ +++E+ + P+ + + ++ +ILH WH +P+I ++ +
Sbjct: 489 LQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMHSMAEWYMR 548
Query: 513 AQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTY 572
+ + RIL++ Q+LK LS +L P F I LA +AS++E + L+KWL+ + +
Sbjct: 549 GEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKWLTDKIREH 608
Query: 573 KDVFFEECLKFVK 585
+ F + C+ F+K
Sbjct: 609 GEPFIQACVTFLK 621
Score = 402 (146.6 bits), Expect = 6.4e-140, Sum P(4) = 6.4e-140
Identities = 74/157 (47%), Positives = 114/157 (72%)
Query: 662 SEGYADDIEAEANSYFHQMFSGQ----LTIEAMVQMLARFKESSVKREHSIFECMIGNLF 717
++ ++ +I+ EANSYF ++++ ++++ +++ML RFK+S++KRE +F CM+ NLF
Sbjct: 829 NQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLF 888
Query: 718 EEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTK 777
EEYRFFP+YP+++L I A LFG II+ LVT++ LG+ALR VL+ALRKP SKM+ FG
Sbjct: 889 EEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIA 948
Query: 778 ALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIE 814
AL++F +RL ++PQYC H+ I+H L +IE
Sbjct: 949 ALDRFKNRLKDYPQYCQHLASIAHFLQFPHHLQEYIE 985
Score = 95 (38.5 bits), Expect = 6.4e-140, Sum P(4) = 6.4e-140
Identities = 24/86 (27%), Positives = 45/86 (52%)
Query: 1265 PSAQGLFQASQSQSP-FSVSQLST-PIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRA 1322
P+ A+ +P FS ++ + + H+ IN + L H ++ V A++RA
Sbjct: 1340 PATTTACTATGPPTPQFSYHDINVYALAGLAPHININVNIPLLQAHPQLKQCVRPAIERA 1399
Query: 1323 IKEIVSGIVQRSVSIATQTTKELVLK 1348
++E+V +V RS+ IA T +++V K
Sbjct: 1400 VQELVHPVVDRSIKIAMTTCEQIVRK 1425
Score = 39 (18.8 bits), Expect = 6.9e-55, Sum P(3) = 6.9e-55
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 793 CNHILQISHLRSTHAELVAFIERALARISSGHLESDGAS 831
C +I+ +R A VA + +AR SG SDG S
Sbjct: 273 CRNIILQYGVREVTASQVARVLGMMARTHSGL--SDGIS 309
>MGI|MGI:2442402 [details] [associations]
symbol:Cnot1 "CCR4-NOT transcription complex, subunit 1"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=ISO;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005778 "peroxisomal membrane" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0010606 "positive regulation of cytoplasmic mRNA
processing body assembly" evidence=ISO] [GO:0030014 "CCR4-NOT
complex" evidence=ISO] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033147 "negative regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0042974
"retinoic acid receptor binding" evidence=ISO] [GO:0048387
"negative regulation of retinoic acid receptor signaling pathway"
evidence=ISO] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=ISO]
[GO:2000036 "regulation of stem cell maintenance" evidence=ISO]
MGI:MGI:2442402 GO:GO:0006355 GO:GO:0006351 GO:GO:0005778
GO:GO:0000932 CTD:23019 eggNOG:COG5103 HOVERGEN:HBG060834 KO:K12604
OMA:YLKARAP OrthoDB:EOG495ZQV ChiTaRS:CNOT1 InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054 EMBL:AC113951
EMBL:AC127300 EMBL:AK031357 EMBL:AK034776 EMBL:AK048177
EMBL:AK143651 EMBL:BC018281 EMBL:BC158073 EMBL:AK129258
IPI:IPI00672703 IPI:IPI00673465 IPI:IPI00880243 IPI:IPI00881912
RefSeq:NP_835179.1 UniGene:Mm.259220 ProteinModelPortal:Q6ZQ08
DIP:DIP-46845N IntAct:Q6ZQ08 STRING:Q6ZQ08 PhosphoSite:Q6ZQ08
PaxDb:Q6ZQ08 PRIDE:Q6ZQ08 Ensembl:ENSMUST00000098473 GeneID:234594
KEGG:mmu:234594 UCSC:uc009myy.1 UCSC:uc009myz.2 UCSC:uc009mzb.2
GeneTree:ENSGT00390000014869 NextBio:382234 Bgee:Q6ZQ08
CleanEx:MM_CNOT1 Genevestigator:Q6ZQ08 Uniprot:Q6ZQ08
Length = 2375
Score = 622 (224.0 bits), Expect = 2.3e-138, Sum P(4) = 2.3e-138
Identities = 124/296 (41%), Positives = 187/296 (63%)
Query: 948 NIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQ 1007
NI+TL+ A ++ E +E P + +Q+KI+FI NN+S N+ K +E E +KE++ PW +Q
Sbjct: 1073 NIDTLLVATDQTERIVEPPEN-IQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQ 1131
Query: 1008 YMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLL 1067
Y+VMKR SIEPNFH LY FLD + + N+ ++ TY N KVLL S+ ++ +RSLL
Sbjct: 1132 YLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLL 1191
Query: 1068 KNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAY 1125
KNLG WLG +T+ +N+ + ++D KSL++EAY KG ++ V+PF +K+LE SL +
Sbjct: 1192 KNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSLVF 1251
Query: 1126 QPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKR--EI 1183
+PPNPWTMAI+ +LAE++ +LK+NLKF+IEVL KNL +D+ ++ P +LLKD+ R +
Sbjct: 1252 RPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNL 1311
Query: 1184 EGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYA 1239
+ KDV QP+ +P + S PP H ++ Y+
Sbjct: 1312 DEQLSAPKKDV--KQPEELPAITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYS 1365
Score = 447 (162.4 bits), Expect = 2.3e-138, Sum P(4) = 2.3e-138
Identities = 146/584 (25%), Positives = 268/584 (45%)
Query: 74 KYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCG 133
K + P+ S+ +K++++ E + L+ +LN S P+ G + D L
Sbjct: 103 KSLKPAPHLFAQLSKVLKLSKVQEVIF-GLA-LLNSSSPDLRGFAAQFIKQKLPDLLRSY 160
Query: 134 KNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSDL--SKHVDSLMQILSLLQSKDHTQ 191
+ ++ + + + + + ++F Q+ + + +D+ ++ L ++
Sbjct: 161 IDADVSGNQEGGFQDIAIEVLHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCP 220
Query: 192 FVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMNELGYGCSADAS 251
VL P+L E D L D L D + M E S+ D M E+GYG A
Sbjct: 221 VVLAPLLYPEKRDI--LMDRIL------PDSGGVAKTM-MESSLADFMQEVGYGFCASIE 271
Query: 252 QCKEILSLF--TPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGC----STMSDLP 305
+C+ I+ F +T ++R+LG +ARTH+GL D S G S+
Sbjct: 272 ECRNIIMQFGVREVTAAQVARVLGMMARTHSGLTDGIPLQSISAPGSGIWSDGKDKSEGA 331
Query: 306 PLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAF-SFFMSVYKYACQEPFP 364
+WNV+VL+ +K+L P+ N+ V LD+ GF I + + + + E FP
Sbjct: 332 QAHTWNVEVLIDVLKELNPSLNFKEVTYELDHPGFQIRDSKGLHNVVYGIQRGLGMEVFP 391
Query: 365 LHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWX 424
+ + WK+ EGQLSF+++++ +P EVF FA D + + W
Sbjct: 392 VDFIYRP-WKHAEGQLSFIQHSLINP-EVFCFADYPCHTVATDILKAPPEDDNREIATWK 449
Query: 425 XXXXXXXXXXXSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPM 484
+E+G + + +P+K CP+ML+L + INT+++ +++E+ + P+
Sbjct: 450 SLDLIESLLRLAEVGQYEQVKQLFSFPIKHCPDMLVLALLQINTSWHTLRHELISTLMPI 509
Query: 485 IIKSTMSNGMILHI-WH---VNPNI---VLRGFVD----AQNMEPDCTIRILEICQELKI 533
+ + ++ +ILH WH +P+I ++ + + + RIL++ Q+LK
Sbjct: 510 FLGNHPNSAIILHYAWHGQGQSPSIRQLIMHAMAEWYMRGEQYDQAKLSRILDVAQDLKA 569
Query: 534 LSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQ 593
LS +L P F I LA +AS++E + L+KWL+ + + + F + C+ F+K
Sbjct: 570 LSMLLNGTPFAFVIDLAALASRREYLKLDKWLTDKIREHGEPFIQACMTFLKRRCPSILG 629
Query: 594 DFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEI 637
+ + A L E + +L L+A G + S +LSE I
Sbjct: 630 GLAPEKDQPKSA--QLPAETLATMLACLQACAGSV-SQELSETI 670
Score = 406 (148.0 bits), Expect = 2.3e-138, Sum P(4) = 2.3e-138
Identities = 75/157 (47%), Positives = 114/157 (72%)
Query: 662 SEGYADDIEAEANSYFHQMFSGQ----LTIEAMVQMLARFKESSVKREHSIFECMIGNLF 717
++ ++ +I+ EANSYF ++++ ++++ +++ML RFK+S++KRE +F CM+ NLF
Sbjct: 836 NQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLF 895
Query: 718 EEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTK 777
EEYRFFP+YP+++L I A LFG II+ LVT++ LG+ALR VL+ALRKP SKM+ FG
Sbjct: 896 EEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIA 955
Query: 778 ALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIE 814
AL++F +RL ++PQYC H+ ISH L +IE
Sbjct: 956 ALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEYIE 992
Score = 90 (36.7 bits), Expect = 2.3e-138, Sum P(4) = 2.3e-138
Identities = 19/73 (26%), Positives = 39/73 (53%)
Query: 1277 QSPFSVSQLST-PIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSV 1335
Q +S ++ + + H+ +N + H ++ V A++RA++E+V +V RS+
Sbjct: 1353 QPQYSYHDINVYSLAGLAPHITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSI 1412
Query: 1336 SIATQTTKELVLK 1348
IA T +++V K
Sbjct: 1413 KIAMTTCEQIVRK 1425
Score = 39 (18.8 bits), Expect = 2.4e-72, Sum P(3) = 2.4e-72
Identities = 19/87 (21%), Positives = 30/87 (34%)
Query: 915 LHNAVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKI 974
+ N + AM++ F SAL A+ ++RE +A A QD
Sbjct: 1444 MRNLTAGMAMITCREPLLMSISTNLKNSFASALR----TASPQQREMMDQAAAQLAQDNC 1499
Query: 975 SFIINNISALNVEAKAKEFTEILKEQY 1001
I VE E + L ++
Sbjct: 1500 ELACCFIQKTAVEKAGPEMDKRLATEF 1526
>UNIPROTKB|G3V7M0 [details] [associations]
symbol:Cnot1 "RCG39079" species:10116 "Rattus norvegicus"
[GO:0005778 "peroxisomal membrane" evidence=IEA] RGD:1308009
CTD:23019 KO:K12604 InterPro:IPR007196 InterPro:IPR024557
Pfam:PF12842 Pfam:PF04054 GeneTree:ENSGT00390000014869
EMBL:CH474006 RefSeq:NP_001128312.1 UniGene:Rn.56498 PRIDE:G3V7M0
Ensembl:ENSRNOT00000016563 GeneID:291841 KEGG:rno:291841
NextBio:633244 Uniprot:G3V7M0
Length = 2376
Score = 622 (224.0 bits), Expect = 2.3e-138, Sum P(4) = 2.3e-138
Identities = 124/296 (41%), Positives = 187/296 (63%)
Query: 948 NIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQ 1007
NI+TL+ A ++ E +E P + +Q+KI+FI NN+S N+ K +E E +KE++ PW +Q
Sbjct: 1074 NIDTLLVATDQTERIVEPPEN-IQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQ 1132
Query: 1008 YMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLL 1067
Y+VMKR SIEPNFH LY FLD + + N+ ++ TY N KVLL S+ ++ +RSLL
Sbjct: 1133 YLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLL 1192
Query: 1068 KNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAY 1125
KNLG WLG +T+ +N+ + ++D KSL++EAY KG ++ V+PF +K+LE SL +
Sbjct: 1193 KNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSLVF 1252
Query: 1126 QPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKR--EI 1183
+PPNPWTMAI+ +LAE++ +LK+NLKF+IEVL KNL +D+ ++ P +LLKD+ R +
Sbjct: 1253 RPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNL 1312
Query: 1184 EGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYA 1239
+ KDV QP+ +P + S PP H ++ Y+
Sbjct: 1313 DEQLSAPKKDV--KQPEELPAITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYS 1366
Score = 447 (162.4 bits), Expect = 2.3e-138, Sum P(4) = 2.3e-138
Identities = 146/584 (25%), Positives = 268/584 (45%)
Query: 74 KYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCG 133
K + P+ S+ +K++++ E + L+ +LN S P+ G + D L
Sbjct: 103 KSLKPAPHLFAQLSKVLKLSKVQEVIF-GLA-LLNSSSPDLRGFAAQFIKQKLPDLLRSY 160
Query: 134 KNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSDL--SKHVDSLMQILSLLQSKDHTQ 191
+ ++ + + + + + ++F Q+ + + +D+ ++ L ++
Sbjct: 161 IDADVSGNQEGGFQDIAIEVLHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCP 220
Query: 192 FVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMNELGYGCSADAS 251
VL P+L E D L D L D + M E S+ D M E+GYG A
Sbjct: 221 VVLAPLLYPEKRDI--LMDRIL------PDSGGVAKTM-MESSLADFMQEVGYGFCASIE 271
Query: 252 QCKEILSLF--TPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGC----STMSDLP 305
+C+ I+ F +T ++R+LG +ARTH+GL D S G S+
Sbjct: 272 ECRNIIMQFGVREVTAAQVARVLGMMARTHSGLTDGIPLQSISAPGSGIWSDGKDKSEGA 331
Query: 306 PLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAF-SFFMSVYKYACQEPFP 364
+WNV+VL+ +K+L P+ N+ V LD+ GF I + + + + E FP
Sbjct: 332 QAHTWNVEVLIDVLKELNPSLNFKEVTYELDHPGFQIRDSKGLHNVVYGIQRGLGMEVFP 391
Query: 365 LHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWX 424
+ + WK+ EGQLSF+++++ +P EVF FA D + + W
Sbjct: 392 VDFIYRP-WKHAEGQLSFIQHSLINP-EVFCFADYPCHTVATDILKAPPEDDNREIATWK 449
Query: 425 XXXXXXXXXXXSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPM 484
+E+G + + +P+K CP+ML+L + INT+++ +++E+ + P+
Sbjct: 450 SLDLIESLLRLAEVGQYEQVKQLFSFPIKHCPDMLVLALLQINTSWHTLRHELISTLMPI 509
Query: 485 IIKSTMSNGMILHI-WH---VNPNI---VLRGFVD----AQNMEPDCTIRILEICQELKI 533
+ + ++ +ILH WH +P+I ++ + + + RIL++ Q+LK
Sbjct: 510 FLGNHPNSAIILHYAWHGQGQSPSIRQLIMHAMAEWYMRGEQYDQAKLSRILDVAQDLKA 569
Query: 534 LSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQ 593
LS +L P F I LA +AS++E + L+KWL+ + + + F + C+ F+K
Sbjct: 570 LSMLLNGTPFAFVIDLAALASRREYLKLDKWLTDKIREHGEPFIQACMTFLKRRCPSILG 629
Query: 594 DFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEI 637
+ + A L E + +L L+A G + S +LSE I
Sbjct: 630 GLAPEKDQPKSA--QLPAETLATMLACLQACAGSV-SQELSETI 670
Score = 406 (148.0 bits), Expect = 2.3e-138, Sum P(4) = 2.3e-138
Identities = 75/157 (47%), Positives = 114/157 (72%)
Query: 662 SEGYADDIEAEANSYFHQMFSGQ----LTIEAMVQMLARFKESSVKREHSIFECMIGNLF 717
++ ++ +I+ EANSYF ++++ ++++ +++ML RFK+S++KRE +F CM+ NLF
Sbjct: 837 NQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLF 896
Query: 718 EEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTK 777
EEYRFFP+YP+++L I A LFG II+ LVT++ LG+ALR VL+ALRKP SKM+ FG
Sbjct: 897 EEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIA 956
Query: 778 ALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIE 814
AL++F +RL ++PQYC H+ ISH L +IE
Sbjct: 957 ALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEYIE 993
Score = 90 (36.7 bits), Expect = 2.3e-138, Sum P(4) = 2.3e-138
Identities = 19/73 (26%), Positives = 39/73 (53%)
Query: 1277 QSPFSVSQLST-PIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSV 1335
Q +S ++ + + H+ +N + H ++ V A++RA++E+V +V RS+
Sbjct: 1354 QPQYSYHDINVYSLAGLAPHITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSI 1413
Query: 1336 SIATQTTKELVLK 1348
IA T +++V K
Sbjct: 1414 KIAMTTCEQIVRK 1426
Score = 39 (18.8 bits), Expect = 2.4e-72, Sum P(3) = 2.4e-72
Identities = 19/87 (21%), Positives = 30/87 (34%)
Query: 915 LHNAVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKI 974
+ N + AM++ F SAL A+ ++RE +A A QD
Sbjct: 1445 MRNLTAGMAMITCREPLLMSISTNLKNSFASALR----TASPQQREMMDQAAAQLAQDNC 1500
Query: 975 SFIINNISALNVEAKAKEFTEILKEQY 1001
I VE E + L ++
Sbjct: 1501 ELACCFIQKTAVEKAGPEMDKRLATEF 1527
>UNIPROTKB|F1MHU9 [details] [associations]
symbol:CNOT1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005778 "peroxisomal membrane" evidence=IEA]
GO:GO:0005778 GO:GO:0000932 OMA:YLKARAP InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054
GeneTree:ENSGT00390000014869 EMBL:DAAA02046541 IPI:IPI00708264
Ensembl:ENSBTAT00000027695 Uniprot:F1MHU9
Length = 2371
Score = 620 (223.3 bits), Expect = 3.9e-138, Sum P(4) = 3.9e-138
Identities = 134/346 (38%), Positives = 204/346 (58%)
Query: 898 GQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAE 957
GQ S++ T++ K V+ P +S PS T NI+TL+ A +
Sbjct: 1029 GQVSTMVTTSTTTTVAKTVT-VTRPTGVSFKKDVP-PSINTT--------NIDTLLVATD 1078
Query: 958 RRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIE 1017
+ E +E P + +Q+KI+FI NN+S N+ K +E E +KE++ PW +QY+VMKR SIE
Sbjct: 1079 QTERIVEPPEN-IQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIE 1137
Query: 1018 PNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKL 1077
PNFH LY FLD + + N+ ++ TY N KVLL S+ ++ +RSLLKNLG WLG +
Sbjct: 1138 PNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMI 1197
Query: 1078 TIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAYQPPNPWTMAI 1135
T+ +N+ + ++D KSL++EAY KG ++ V+PF +K+LE S+ ++PPNPWTMAI
Sbjct: 1198 TLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTMAI 1257
Query: 1136 LGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKR--EIEGNPDFSNKD 1193
+ +LAE++ +LK+NLKF+IEVL KNL +D+ ++ P +LLKD+ R ++ KD
Sbjct: 1258 MNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPKKD 1317
Query: 1194 VGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYA 1239
V QP+ +P + S PP H ++ Y+
Sbjct: 1318 V--KQPEELPPITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYS 1361
Score = 447 (162.4 bits), Expect = 3.9e-138, Sum P(4) = 3.9e-138
Identities = 119/430 (27%), Positives = 209/430 (48%)
Query: 226 LAEMEKEMSMGDVMNELGYGCSADASQCKEILSLF--TPLTEITLSRILGAIARTHAGLE 283
+A+ E S+ D M E+GYG A +C+ I+ F +T ++R+LG +ARTH+GL
Sbjct: 246 VAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMARTHSGLT 305
Query: 284 DNQNTFSTFTLALGC----STMSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEG 339
D S G SD +WNV+VL+ +K+L P+ N+ V LD+ G
Sbjct: 306 DGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLNFKEVTYELDHPG 365
Query: 340 FYIPTEEAF-SFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAH 398
F I + + + + E FP+ + WK+ EGQLSF+++++ +P E+F FA
Sbjct: 366 FQIRDSKGLHNVVYGIQRGLGMEVFPVDLIYRP-WKHAEGQLSFIQHSLINP-EIFCFAD 423
Query: 399 SARQLPYVDAVPGLKLQSGQANHAWXXXXXXXXXXXXSEMGHASFARSMLEYPLKQCPEM 458
D + + W +E+G + + +P+K CP+M
Sbjct: 424 YPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHCPDM 483
Query: 459 LLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHI-WH---VNPNI---VLRGFV 511
L+L + INT+++ +++E+ + P+ + + ++ +ILH WH +P+I ++
Sbjct: 484 LVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMHAMA 543
Query: 512 D----AQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSI 567
+ + + RIL++ Q+LK LS +L P F I LA +AS++E + L+KWL+
Sbjct: 544 EWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKWLTD 603
Query: 568 NLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGL 627
+ + + F + C+ F+K + + A L E + +L L+A G
Sbjct: 604 KIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSA--QLPPETLATMLACLQACAGS 661
Query: 628 ITSTKLSEEI 637
+ S +LSE I
Sbjct: 662 V-SQELSETI 670
Score = 406 (148.0 bits), Expect = 3.9e-138, Sum P(4) = 3.9e-138
Identities = 75/157 (47%), Positives = 114/157 (72%)
Query: 662 SEGYADDIEAEANSYFHQMFSGQ----LTIEAMVQMLARFKESSVKREHSIFECMIGNLF 717
++ ++ +I+ EANSYF ++++ ++++ +++ML RFK+S++KRE +F CM+ NLF
Sbjct: 832 NQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLF 891
Query: 718 EEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTK 777
EEYRFFP+YP+++L I A LFG II+ LVT++ LG+ALR VL+ALRKP SKM+ FG
Sbjct: 892 EEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIA 951
Query: 778 ALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIE 814
AL++F +RL ++PQYC H+ ISH L +IE
Sbjct: 952 ALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEYIE 988
Score = 392 (143.0 bits), Expect = 2.3e-132, Sum P(4) = 2.3e-132
Identities = 136/522 (26%), Positives = 232/522 (44%)
Query: 10 SQIRFLLQSLNEANADSVFRELCQFIE-YGIEGSTMMLQTCMDHLNLHGTGLKNP----Q 64
SQI +L+ +L + N + +E+ + +G E +L+ H++ G G + Q
Sbjct: 11 SQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGDGKSSGKDFHQ 70
Query: 65 LESVVASVFKYIMDKPNFSTVFSQSV-------KITEINEQLLENLSDVLNLSLPERIGI 117
+ ++ I KPNF + S ++ K + L LS VL LS + +
Sbjct: 71 TQFLIQECASLIT-KPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLKLSKVQEVIF 129
Query: 118 GLALSDSENLDALMCGKNFCMAQIERLCANPVPMN-SAEQ---IQNIIMFLQRSSDLSKH 173
GLAL +S + D F ++ L + + + S Q Q+I + + LS
Sbjct: 130 GLALLNSSSTDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEVLHLL-LSHL 188
Query: 174 VDSLMQILSLLQSK-DHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDIL------ 226
+ + Q + D L P E L L L+ E RD D IL
Sbjct: 189 LFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVV-LAPL-LYPEKRDILMDRILPDSGGV 246
Query: 227 AEMEKEMSMGDVMNELGYGCSADASQCKEILSLF--TPLTEITLSRILGAIARTHAGLED 284
A+ E S+ D M E+GYG A +C+ I+ F +T ++R+LG +ARTH+GL D
Sbjct: 247 AKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMARTHSGLTD 306
Query: 285 NQNTFSTFTLALGC----STMSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGF 340
S G SD +WNV+VL+ +K+L P+ N+ V LD+ GF
Sbjct: 307 GIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLNFKEVTYELDHPGF 366
Query: 341 YIPTEEAF-SFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHS 399
I + + + + E FP+ + WK+ EGQLSF+++++ +P E+F FA
Sbjct: 367 QIRDSKGLHNVVYGIQRGLGMEVFPVDLIYRP-WKHAEGQLSFIQHSLINP-EIFCFADY 424
Query: 400 ARQLPYVDAVPGLKLQSGQANHAWXXXXXXXXXXXXSEMGHASFARSMLEYPLKQCPEML 459
D + + W +E+G + + +P+K CP+ML
Sbjct: 425 PCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHCPDML 484
Query: 460 LLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHI-WH 500
+L + INT+++ +++E+ + P+ + + ++ +ILH WH
Sbjct: 485 VLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWH 526
Score = 90 (36.7 bits), Expect = 3.9e-138, Sum P(4) = 3.9e-138
Identities = 19/73 (26%), Positives = 39/73 (53%)
Query: 1277 QSPFSVSQLST-PIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSV 1335
Q +S ++ + + H+ +N + H ++ V A++RA++E+V +V RS+
Sbjct: 1349 QPQYSYHDINVYSLAGLAPHITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSI 1408
Query: 1336 SIATQTTKELVLK 1348
IA T +++V K
Sbjct: 1409 KIAMTTCEQIVRK 1421
Score = 39 (18.8 bits), Expect = 2.4e-72, Sum P(3) = 2.4e-72
Identities = 19/87 (21%), Positives = 30/87 (34%)
Query: 915 LHNAVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKI 974
+ N + AM++ F SAL A+ ++RE +A A QD
Sbjct: 1440 MRNLTAGMAMITCREPLLMSISTNLKNSFASALR----TASPQQREMMDQAAAQLAQDNC 1495
Query: 975 SFIINNISALNVEAKAKEFTEILKEQY 1001
I VE E + L ++
Sbjct: 1496 ELACCFIQKTAVEKAGPEMDKRLATEF 1522
>UNIPROTKB|A5YKK6 [details] [associations]
symbol:CNOT1 "CCR4-NOT transcription complex subunit 1"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISS;IDA] [GO:0004535 "poly(A)-specific
ribonuclease activity" evidence=IDA] [GO:2000036 "regulation of
stem cell maintenance" evidence=IMP] [GO:0010606 "positive
regulation of cytoplasmic mRNA processing body assembly"
evidence=IDA] [GO:1900153 "positive regulation of
nuclear-transcribed mRNA catabolic process, deadenylation-dependent
decay" evidence=IMP] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IMP]
[GO:0042974 "retinoic acid receptor binding" evidence=IDA]
[GO:0048387 "negative regulation of retinoic acid receptor
signaling pathway" evidence=IDA] [GO:0030331 "estrogen receptor
binding" evidence=IDA] [GO:0033147 "negative regulation of
intracellular estrogen receptor signaling pathway" evidence=IDA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005778 "peroxisomal
membrane" evidence=IDA] [GO:0030014 "CCR4-NOT complex"
evidence=IDA] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] Reactome:REACT_71
Reactome:REACT_21257 GO:GO:0005829 GO:GO:0006355 GO:GO:0006351
GO:GO:0005778 GO:GO:0000932 GO:GO:0000289 EMBL:AL117492
EMBL:BX537840 EMBL:CR749237 EMBL:EF553522 EMBL:AC009118
EMBL:AC010287 EMBL:BC000779 EMBL:BC024317 EMBL:BC040523
EMBL:AB023224 EMBL:AF110778 IPI:IPI00166010 IPI:IPI00410157
IPI:IPI00642900 IPI:IPI00880052 PIR:T17270 RefSeq:NP_001252541.1
RefSeq:NP_057368.3 RefSeq:NP_996882.1 UniGene:Hs.460923
UniGene:Hs.731691 PDB:4GMJ PDB:4GML PDBsum:4GMJ PDBsum:4GML
ProteinModelPortal:A5YKK6 DIP:DIP-44954N IntAct:A5YKK6
MINT:MINT-2835018 STRING:A5YKK6 PhosphoSite:A5YKK6 PaxDb:A5YKK6
PeptideAtlas:A5YKK6 PRIDE:A5YKK6 Ensembl:ENST00000317147
Ensembl:ENST00000441024 Ensembl:ENST00000567188
Ensembl:ENST00000569240 GeneID:23019 KEGG:hsa:23019 UCSC:uc002enu.4
UCSC:uc002env.3 UCSC:uc002enx.3 CTD:23019 GeneCards:GC16M058553
H-InvDB:HIX0013093 HGNC:HGNC:7877 MIM:604917 neXtProt:NX_A5YKK6
PharmGKB:PA26672 eggNOG:COG5103 HOVERGEN:HBG060834
InParanoid:A5YKK6 KO:K12604 OMA:YLKARAP OrthoDB:EOG495ZQV
PhylomeDB:A5YKK6 ChiTaRS:CNOT1 GenomeRNAi:23019 NextBio:43960
ArrayExpress:A5YKK6 Bgee:A5YKK6 Genevestigator:A5YKK6
InterPro:IPR007196 InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054
Uniprot:A5YKK6
Length = 2376
Score = 621 (223.7 bits), Expect = 3.9e-138, Sum P(4) = 3.9e-138
Identities = 134/346 (38%), Positives = 205/346 (59%)
Query: 898 GQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAE 957
GQ S++ T++ K V+ P +S PS T NI+TL+ A +
Sbjct: 1034 GQVSTMVTTSTTTTVAKTVT-VTRPTGVSFKKDVP-PSINTT--------NIDTLLVATD 1083
Query: 958 RRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIE 1017
+ E +E P + +Q+KI+FI NN+S N+ K +E E +KE++ PW +QY+VMKR SIE
Sbjct: 1084 QTERIVEPPEN-IQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIE 1142
Query: 1018 PNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKL 1077
PNFH LY FLD + + N+ ++ TY N KVLL S+ ++ +RSLLKNLG WLG +
Sbjct: 1143 PNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMI 1202
Query: 1078 TIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAYQPPNPWTMAI 1135
T+ +N+ + ++D KSL++EAY KG ++ V+PF +K+LE S+ ++PPNPWTMAI
Sbjct: 1203 TLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTMAI 1262
Query: 1136 LGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKR--EIEGNPDFSNKD 1193
+ +LAE++ +LK+NLKF+IEVL KNL +D+ ++ P +LLKD+ R ++ KD
Sbjct: 1263 MNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPKKD 1322
Query: 1194 VGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYA 1239
V QP+ +P + S + PP H ++ Y+
Sbjct: 1323 V--KQPEELPPITTTTTSTTPATNTTCTATVPPQPQYSYHDINVYS 1366
Score = 446 (162.1 bits), Expect = 3.9e-138, Sum P(4) = 3.9e-138
Identities = 119/430 (27%), Positives = 209/430 (48%)
Query: 226 LAEMEKEMSMGDVMNELGYGCSADASQCKEILSLF--TPLTEITLSRILGAIARTHAGLE 283
+A+ E S+ D M E+GYG A +C+ I+ F +T ++R+LG +ARTH+GL
Sbjct: 246 VAKTMMESSLADFMQEVGYGFCASIEECRNIIVQFGVREVTAAQVARVLGMMARTHSGLT 305
Query: 284 DNQNTFSTFTLALGC----STMSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEG 339
D S G SD +WNV+VL+ +K+L P+ N+ V LD+ G
Sbjct: 306 DGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLNFKEVTYELDHPG 365
Query: 340 FYIPTEEAF-SFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAH 398
F I + + + + E FP+ + WK+ EGQLSF+++++ +P E+F FA
Sbjct: 366 FQIRDSKGLHNVVYGIQRGLGMEVFPVDLIYRP-WKHAEGQLSFIQHSLINP-EIFCFAD 423
Query: 399 SARQLPYVDAVPGLKLQSGQANHAWXXXXXXXXXXXXSEMGHASFARSMLEYPLKQCPEM 458
D + + W +E+G + + +P+K CP+M
Sbjct: 424 YPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHCPDM 483
Query: 459 LLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHI-WH---VNPNI---VLRGFV 511
L+L + INT+++ +++E+ + P+ + + ++ +ILH WH +P+I ++
Sbjct: 484 LVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMHAMA 543
Query: 512 D----AQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSI 567
+ + + RIL++ Q+LK LS +L P F I LA +AS++E + L+KWL+
Sbjct: 544 EWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKWLTD 603
Query: 568 NLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGL 627
+ + + F + C+ F+K + + A L E + +L L+A G
Sbjct: 604 KIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSA--QLPPETLATMLACLQACAGS 661
Query: 628 ITSTKLSEEI 637
+ S +LSE I
Sbjct: 662 V-SQELSETI 670
Score = 406 (148.0 bits), Expect = 3.9e-138, Sum P(4) = 3.9e-138
Identities = 75/157 (47%), Positives = 114/157 (72%)
Query: 662 SEGYADDIEAEANSYFHQMFSGQ----LTIEAMVQMLARFKESSVKREHSIFECMIGNLF 717
++ ++ +I+ EANSYF ++++ ++++ +++ML RFK+S++KRE +F CM+ NLF
Sbjct: 837 NQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLF 896
Query: 718 EEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTK 777
EEYRFFP+YP+++L I A LFG II+ LVT++ LG+ALR VL+ALRKP SKM+ FG
Sbjct: 897 EEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIA 956
Query: 778 ALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIE 814
AL++F +RL ++PQYC H+ ISH L +IE
Sbjct: 957 ALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEYIE 993
Score = 390 (142.3 bits), Expect = 3.0e-132, Sum P(4) = 3.0e-132
Identities = 135/522 (25%), Positives = 233/522 (44%)
Query: 10 SQIRFLLQSLNEANADSVFRELCQFIE-YGIEGSTMMLQTCMDHLNLHGTGLKNP----Q 64
SQI +L+ +L + N + +E+ + +G E +L+ H++ G G + Q
Sbjct: 11 SQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGDGKSSGKDFHQ 70
Query: 65 LESVVASVFKYIMDKPNFSTVFSQSV-------KITEINEQLLENLSDVLNLSLPERIGI 117
+ ++ ++ KPNF + S ++ K + L LS VL LS + +
Sbjct: 71 TQFLIQEC-ALLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLKLSKVQEVIF 129
Query: 118 GLALSDSENLDALMCGKNFCMAQIERLCANPVPMN-SAEQ---IQNIIMFLQRSSDLSKH 173
GLAL +S + D F ++ L + + + S Q Q+I + + LS
Sbjct: 130 GLALLNSSSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEVLHLL-LSHL 188
Query: 174 VDSLMQILSLLQSK-DHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDIL------ 226
+ + Q + D L P E L L L+ E RD D IL
Sbjct: 189 LFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVV-LAPL-LYPEKRDILMDRILPDSGGV 246
Query: 227 AEMEKEMSMGDVMNELGYGCSADASQCKEILSLF--TPLTEITLSRILGAIARTHAGLED 284
A+ E S+ D M E+GYG A +C+ I+ F +T ++R+LG +ARTH+GL D
Sbjct: 247 AKTMMESSLADFMQEVGYGFCASIEECRNIIVQFGVREVTAAQVARVLGMMARTHSGLTD 306
Query: 285 NQNTFSTFTLALGC----STMSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGF 340
S G SD +WNV+VL+ +K+L P+ N+ V LD+ GF
Sbjct: 307 GIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLNFKEVTYELDHPGF 366
Query: 341 YIPTEEAF-SFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHS 399
I + + + + E FP+ + WK+ EGQLSF+++++ +P E+F FA
Sbjct: 367 QIRDSKGLHNVVYGIQRGLGMEVFPVDLIYRP-WKHAEGQLSFIQHSLINP-EIFCFADY 424
Query: 400 ARQLPYVDAVPGLKLQSGQANHAWXXXXXXXXXXXXSEMGHASFARSMLEYPLKQCPEML 459
D + + W +E+G + + +P+K CP+ML
Sbjct: 425 PCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHCPDML 484
Query: 460 LLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHI-WH 500
+L + INT+++ +++E+ + P+ + + ++ +ILH WH
Sbjct: 485 VLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWH 526
Score = 90 (36.7 bits), Expect = 3.9e-138, Sum P(4) = 3.9e-138
Identities = 19/73 (26%), Positives = 39/73 (53%)
Query: 1277 QSPFSVSQLST-PIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSV 1335
Q +S ++ + + H+ +N + H ++ V A++RA++E+V +V RS+
Sbjct: 1354 QPQYSYHDINVYSLAGLAPHITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSI 1413
Query: 1336 SIATQTTKELVLK 1348
IA T +++V K
Sbjct: 1414 KIAMTTCEQIVRK 1426
Score = 39 (18.8 bits), Expect = 3.0e-72, Sum P(3) = 3.0e-72
Identities = 19/87 (21%), Positives = 30/87 (34%)
Query: 915 LHNAVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKI 974
+ N + AM++ F SAL A+ ++RE +A A QD
Sbjct: 1445 MRNLTAGMAMITCREPLLMSISTNLKNSFASALR----TASPQQREMMDQAAAQLAQDNC 1500
Query: 975 SFIINNISALNVEAKAKEFTEILKEQY 1001
I VE E + L ++
Sbjct: 1501 ELACCFIQKTAVEKAGPEMDKRLATEF 1527
>UNIPROTKB|F1RFU3 [details] [associations]
symbol:CNOT1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005778 "peroxisomal membrane" evidence=IEA]
GO:GO:0005778 GO:GO:0000932 CTD:23019 KO:K12604 OMA:YLKARAP
InterPro:IPR007196 InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054
GeneTree:ENSGT00390000014869 EMBL:FP236140 RefSeq:XP_003127000.1
Ensembl:ENSSSCT00000003099 GeneID:100511993 KEGG:ssc:100511993
Uniprot:F1RFU3
Length = 2375
Score = 620 (223.3 bits), Expect = 6.4e-138, Sum P(4) = 6.4e-138
Identities = 134/346 (38%), Positives = 204/346 (58%)
Query: 898 GQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAE 957
GQ S++ T++ K V+ P +S PS T NI+TL+ A +
Sbjct: 1034 GQVSTMVTTSTTTTVAKTVT-VTRPTGVSFKKDVP-PSINTT--------NIDTLLVATD 1083
Query: 958 RRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIE 1017
+ E +E P + +Q+KI+FI NN+S N+ K +E E +KE++ PW +QY+VMKR SIE
Sbjct: 1084 QTERIVEPPEN-IQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIE 1142
Query: 1018 PNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKL 1077
PNFH LY FLD + + N+ ++ TY N KVLL S+ ++ +RSLLKNLG WLG +
Sbjct: 1143 PNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMI 1202
Query: 1078 TIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAYQPPNPWTMAI 1135
T+ +N+ + ++D KSL++EAY KG ++ V+PF +K+LE S+ ++PPNPWTMAI
Sbjct: 1203 TLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTMAI 1262
Query: 1136 LGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKR--EIEGNPDFSNKD 1193
+ +LAE++ +LK+NLKF+IEVL KNL +D+ ++ P +LLKD+ R ++ KD
Sbjct: 1263 MNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPKKD 1322
Query: 1194 VGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYA 1239
V QP+ +P + S PP H ++ Y+
Sbjct: 1323 V--KQPEELPPITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYS 1366
Score = 447 (162.4 bits), Expect = 6.4e-138, Sum P(4) = 6.4e-138
Identities = 119/430 (27%), Positives = 209/430 (48%)
Query: 226 LAEMEKEMSMGDVMNELGYGCSADASQCKEILSLF--TPLTEITLSRILGAIARTHAGLE 283
+A+ E S+ D M E+GYG A +C+ I+ F +T ++R+LG +ARTH+GL
Sbjct: 246 VAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMARTHSGLT 305
Query: 284 DNQNTFSTFTLALGC----STMSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEG 339
D S G SD +WNV+VL+ +K+L P+ N+ V LD+ G
Sbjct: 306 DGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLNFKEVTYELDHPG 365
Query: 340 FYIPTEEAF-SFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAH 398
F I + + + + E FP+ + WK+ EGQLSF+++++ +P E+F FA
Sbjct: 366 FQIRDSKGLHNVVYGIQRGLGMEVFPVDLIYRP-WKHAEGQLSFIQHSLINP-EIFCFAD 423
Query: 399 SARQLPYVDAVPGLKLQSGQANHAWXXXXXXXXXXXXSEMGHASFARSMLEYPLKQCPEM 458
D + + W +E+G + + +P+K CP+M
Sbjct: 424 YPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHCPDM 483
Query: 459 LLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHI-WH---VNPNI---VLRGFV 511
L+L + INT+++ +++E+ + P+ + + ++ +ILH WH +P+I ++
Sbjct: 484 LVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMHAMA 543
Query: 512 D----AQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSI 567
+ + + RIL++ Q+LK LS +L P F I LA +AS++E + L+KWL+
Sbjct: 544 EWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKWLTD 603
Query: 568 NLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGL 627
+ + + F + C+ F+K + + A L E + +L L+A G
Sbjct: 604 KIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSA--QLPPETLATMLACLQACAGS 661
Query: 628 ITSTKLSEEI 637
+ S +LSE I
Sbjct: 662 V-SQELSETI 670
Score = 406 (148.0 bits), Expect = 6.4e-138, Sum P(4) = 6.4e-138
Identities = 75/157 (47%), Positives = 114/157 (72%)
Query: 662 SEGYADDIEAEANSYFHQMFSGQ----LTIEAMVQMLARFKESSVKREHSIFECMIGNLF 717
++ ++ +I+ EANSYF ++++ ++++ +++ML RFK+S++KRE +F CM+ NLF
Sbjct: 837 NQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLF 896
Query: 718 EEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTK 777
EEYRFFP+YP+++L I A LFG II+ LVT++ LG+ALR VL+ALRKP SKM+ FG
Sbjct: 897 EEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIA 956
Query: 778 ALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIE 814
AL++F +RL ++PQYC H+ ISH L +IE
Sbjct: 957 ALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEYIE 993
Score = 391 (142.7 bits), Expect = 4.8e-132, Sum P(4) = 4.8e-132
Identities = 136/522 (26%), Positives = 232/522 (44%)
Query: 10 SQIRFLLQSLNEANADSVFRELCQFIE-YGIEGSTMMLQTCMDHLNLHGTGLKNP----Q 64
SQI +L+ +L + N + +E+ + +G E +L+ H++ G G + Q
Sbjct: 11 SQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGDGKSSGKDFHQ 70
Query: 65 LESVVASVFKYIMDKPNFSTVFSQSV-------KITEINEQLLENLSDVLNLSLPERIGI 117
+ ++ I KPNF + S ++ K + L LS VL LS + +
Sbjct: 71 TQFLIQECASLIT-KPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLKLSKVQEVIF 129
Query: 118 GLALSDSENLDALMCGKNFCMAQIERLCANPVPMN-SAEQ---IQNIIMFLQRSSDLSKH 173
GLAL +S + D F ++ L + + + S Q Q+I + + LS
Sbjct: 130 GLALLNSSSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEVLHLL-LSHL 188
Query: 174 VDSLMQILSLLQSK-DHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDIL------ 226
+ + Q + D L P E L L L+ E RD D IL
Sbjct: 189 LFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVV-LAPL-LYPEKRDILMDRILPDSGGV 246
Query: 227 AEMEKEMSMGDVMNELGYGCSADASQCKEILSLF--TPLTEITLSRILGAIARTHAGLED 284
A+ E S+ D M E+GYG A +C+ I+ F +T ++R+LG +ARTH+GL D
Sbjct: 247 AKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMARTHSGLTD 306
Query: 285 NQNTFSTFTLALGC----STMSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGF 340
S G SD +WNV+VL+ +K+L P+ N+ V LD+ GF
Sbjct: 307 GIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLNFKEVTYELDHPGF 366
Query: 341 YIPTEEAF-SFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHS 399
I + + + + E FP+ + WK+ EGQLSF+++++ +P E+F FA
Sbjct: 367 QIRDSKGLHNVVYGIQRGLGMEVFPVDLIYRP-WKHAEGQLSFIQHSLINP-EIFCFADY 424
Query: 400 ARQLPYVDAVPGLKLQSGQANHAWXXXXXXXXXXXXSEMGHASFARSMLEYPLKQCPEML 459
D + + W +E+G + + +P+K CP+ML
Sbjct: 425 PCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHCPDML 484
Query: 460 LLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHI-WH 500
+L + INT+++ +++E+ + P+ + + ++ +ILH WH
Sbjct: 485 VLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWH 526
Score = 88 (36.0 bits), Expect = 6.4e-138, Sum P(4) = 6.4e-138
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 1292 IGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLK 1348
+ H+ +N + H ++ V A++RA++E+V +V RS+ IA T +++V K
Sbjct: 1370 LAPHITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRK 1426
Score = 39 (18.8 bits), Expect = 2.4e-72, Sum P(3) = 2.4e-72
Identities = 19/87 (21%), Positives = 30/87 (34%)
Query: 915 LHNAVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKI 974
+ N + AM++ F SAL A+ ++RE +A A QD
Sbjct: 1445 MRNLTAGMAMITCREPLLMSISTNLKNSFASALR----TASPQQREMMDQAAAQLAQDNC 1500
Query: 975 SFIINNISALNVEAKAKEFTEILKEQY 1001
I VE E + L ++
Sbjct: 1501 ELACCFIQKTAVEKAGPEMDKRLATEF 1527
>UNIPROTKB|E1BXD4 [details] [associations]
symbol:LOC100858397 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005778 "peroxisomal membrane" evidence=IEA]
GO:GO:0005778 GO:GO:0000932 OMA:YLKARAP InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054
GeneTree:ENSGT00390000014869 EMBL:AADN02051617 EMBL:AADN02051618
IPI:IPI00596498 Ensembl:ENSGALT00000040121 ArrayExpress:E1BXD4
Uniprot:E1BXD4
Length = 2129
Score = 550 (198.7 bits), Expect = 1.7e-129, Sum P(4) = 1.7e-129
Identities = 126/349 (36%), Positives = 195/349 (55%)
Query: 898 GQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAE 957
GQ S++ T++ K ++ P +S PS T NI+TL+ A +
Sbjct: 785 GQVSTIVTTSTTTTVAKTIT-ITRPTGVSFKKDVP-PSINTT--------NIDTLLVATD 834
Query: 958 RRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIE 1017
+ E +E P + VQ+KI+FI NN+S N+ K +E E +KE++ PW +QY+VMKR SIE
Sbjct: 835 QTERIVEPPEN-VQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIE 893
Query: 1018 PNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKL 1077
PNFH LY FLD + + N+ ++ TY N KVLL S+ ++ +RSLLKNLG WLG +
Sbjct: 894 PNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMI 953
Query: 1078 TIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAYQPPNPWTMAI 1135
T+ +N+ + ++D KSL++EAY KG ++ V+PF +K+LE S+ ++PPNPWTMAI
Sbjct: 954 TLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTMAI 1013
Query: 1136 LGLLAEIYSMPNLKMNLKFDIEVLFKNLGVD---MKDITPTSLLKDRKR--EIEGNPDFS 1190
+ +LAE++ +LK + D ++ F L + + + P SLLKD+ R ++
Sbjct: 1014 MNVLAELHQEHDLKKGVVKD-QISFLALSCEELGIASLEPGSLLKDKDRLKNLDEQLSAP 1072
Query: 1191 NKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYA 1239
KDV QP+ +P + S PP H ++ Y+
Sbjct: 1073 KKDV--KQPEELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYS 1119
Score = 438 (159.2 bits), Expect = 1.7e-129, Sum P(4) = 1.7e-129
Identities = 116/424 (27%), Positives = 207/424 (48%)
Query: 232 EMSMGDVMNELGYGCSADASQCKEILSLF--TPLTEITLSRILGAIARTHAGLEDNQNTF 289
E S+ D M E+GYG +C+ I+ F +T ++R+LG +ARTH+GL D
Sbjct: 3 ESSLADFMQEVGYGFCTSIEECRNIIMQFGVREVTAAQVARVLGMMARTHSGLTDGIPLQ 62
Query: 290 STFTLALGC----STMSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTE 345
S G SD +WNV+VL+ +K+L P+ ++ V LD+ GF I
Sbjct: 63 SISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLDFKVVTYELDHPGFQIRDS 122
Query: 346 EAFSFFM-SVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLP 404
+ + + + E FP++A+ WK+ EGQLSF+++++ +P ++F FA
Sbjct: 123 KGLHIVVFGIQRGLGMEVFPVNAIYRP-WKHAEGQLSFIQHSLINP-DIFCFADYPCHAV 180
Query: 405 YVDAVPGLKLQSGQANHAWXXXXXXXXXXXXSEMGHASFARSMLEYPLKQCPEMLLLGMA 464
D + + W +E+G + + +P+K CP+ML+L +
Sbjct: 181 TTDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHCPDMLVLALL 240
Query: 465 HINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHI-WH---VNPNI---VLRGFVD----A 513
INT+++ +++E+ + P+ + + ++ +ILH WH +P+I ++ +
Sbjct: 241 QINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMHAMAEWYMRG 300
Query: 514 QNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYK 573
+ + RIL++ Q+LK LS +L P F I LA +AS++E + L+KWL+ + +
Sbjct: 301 EQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKWLTDKIREHG 360
Query: 574 DVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGLITSTKL 633
+ F + C+ F+K + + A L E + +L L+A G + S +L
Sbjct: 361 EPFIQACMTFLKRRCPSILGGLAPEKDQPKSA--QLPPETLATMLACLQACAGSV-SQEL 417
Query: 634 SEEI 637
SE I
Sbjct: 418 SETI 421
Score = 405 (147.6 bits), Expect = 1.7e-129, Sum P(4) = 1.7e-129
Identities = 75/157 (47%), Positives = 114/157 (72%)
Query: 662 SEGYADDIEAEANSYFHQMFSGQ----LTIEAMVQMLARFKESSVKREHSIFECMIGNLF 717
++ ++ +I+ EANSYF ++++ ++++ +++ML RFK+S++KRE +F CM+ NLF
Sbjct: 588 NQNFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLF 647
Query: 718 EEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTK 777
EEYRFFP+YP+++L I A LFG II+ LVT++ LG+ALR VL+ALRKP SKM+ FG
Sbjct: 648 EEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIA 707
Query: 778 ALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIE 814
AL++F +RL ++PQYC H+ ISH L +IE
Sbjct: 708 ALDRFKNRLKDYPQYCQHLASISHFIQFPHHLQEYIE 744
Score = 89 (36.4 bits), Expect = 1.7e-129, Sum P(4) = 1.7e-129
Identities = 19/73 (26%), Positives = 39/73 (53%)
Query: 1277 QSPFSVSQLST-PIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSV 1335
Q +S ++ + + H+ +N + H ++ V A++RA++E+V +V RS+
Sbjct: 1107 QPQYSYHDINVYSLGGLAPHITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSI 1166
Query: 1336 SIATQTTKELVLK 1348
IA T +++V K
Sbjct: 1167 KIAMTTCEQIVRK 1179
>DICTYBASE|DDB_G0276029 [details] [associations]
symbol:DDB_G0276029 "putative CCR4-NOT complex
subunit 1" species:44689 "Dictyostelium discoideum" [GO:0051726
"regulation of cell cycle" evidence=ISS] [GO:0030015 "CCR4-NOT core
complex" evidence=ISS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISS] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISS] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=ISS] dictyBase:DDB_G0276029 GO:GO:0005634
GO:GO:0005737 EMBL:AAFI02000014 GenomeReviews:CM000151_GR
GO:GO:0000122 GO:GO:0051726 GO:GO:0000288 GO:GO:0030015
GO:GO:0000175 eggNOG:COG5103 KO:K12604 InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054 OMA:ANIAGTR
RefSeq:XP_643319.1 ProteinModelPortal:Q75JL4
EnsemblProtists:DDB0220028 GeneID:8620365 KEGG:ddi:DDB_G0276029
InParanoid:Q75JL4 ProtClustDB:CLSZ2445457 Uniprot:Q75JL4
Length = 2526
Score = 661 (237.7 bits), Expect = 7.5e-125, Sum P(5) = 7.5e-125
Identities = 167/657 (25%), Positives = 326/657 (49%)
Query: 180 ILSLLQSKDHTQFVLNPVLPDELHDATSLRD-LDLFHECRDDDFDDILAEMEKEMSMGDV 238
I+S + ++ +++ + A++L+D L F + + D I+ M E++
Sbjct: 394 IISKVSQQNVPYQIISSIGYSSCSSASTLKDILFQFQKLTESDIAQIIVSMA-ELTSNTN 452
Query: 239 MNELGYGCSADASQCKEILSL-FTPLTEITLSRI--LGAIARTHAGLEDNQNTFSTFTLA 295
N + D ++ +I L F L + S + + + E + T +T +
Sbjct: 453 NNNNNNNENNDENEKTKIPYLTFNDLNDKETSNTSPTSSSPKQQSENESSSTTTTTNSNN 512
Query: 296 LGCSTMSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVY 355
+ +++P WN+ + V IK+L P +W V+ +D + +F ++VY
Sbjct: 513 NNNNNTTNIP--DEWNISIFVDVIKELYPTIDWDIVIREMDCPIVNNMDQRGLAFILAVY 570
Query: 356 KYACQ------EPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAV 409
K A Q +PFP+ + VW N+ Q+ FL+ A+ S + F F +S ++ +D
Sbjct: 571 KKATQVDQQQSKPFPIDFILDRVWVNSLSQIQFLKIAIQS--DFFPFQNSTKKR--IDQS 626
Query: 410 PGLKLQSGQANHAWXXXXXXXXXXXXSEMG--HASFARSMLEYPLKQCPEMLLLGMAHIN 467
K H W S++ H S + + + P+K C ++L+LG++ I
Sbjct: 627 SLSKSTPPTIAH-WNSISLIETLLQLSDIDSEHYSKVKPLFDSPIKNCLDLLILGVSSIT 685
Query: 468 TAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEI 527
N +Q E+ +F ++ ++ +W +P V++ D +P R+L++
Sbjct: 686 LKKNKLQNELLTTLFQTLLSQHNYQSIVSQLWKDHPLTVIQIMADITQKDPKELSRLLDV 745
Query: 528 CQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYK-DVFFEECLKFVKE 586
QELKIL +L PF + LA +ASQ+E + LE+W+ + F +EC+ F+ +
Sbjct: 746 AQELKILRQMLYCKTYPFIVNLAALASQREYLFLERWVQERMKEDDHQSFIKECISFLND 805
Query: 587 --VQFGRS-QDFSAQPFHHSGALLNLYMEKIPV-ILKLLKAHIGLITSTKLSEEIEKFQA 642
++ G+S ++ S S P +++ + + T ++ ++
Sbjct: 806 RVLKKGKSGEENSNTAASASPTTATTGSGSFPPQSIQISNNVLSTLCKTLMAAP-DQIPT 864
Query: 643 VVLDSTPRLQNG-EAADSSTSEG-YADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKES 700
+ + + + A+S T+E + ++E E NSYF +++SG+++++ ++ +L +K S
Sbjct: 865 DLFNDLKNISAALQTAESETTERRFPAEVEDETNSYFIKLYSGEISVDQIISVLKEYKVS 924
Query: 701 SVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVL 760
+++ IF+C++ NLF+EY+F YP+++L+I +LFGS+IK+QL++ L +AL+ VL
Sbjct: 925 KNQKDQDIFKCLLFNLFDEYKFLSDYPDKELKITGLLFGSLIKNQLISSQPLRVALKYVL 984
Query: 761 DALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERAL 817
+A+R P +S MF+FG +L F +RL+EWPQY I I H R + +++ + + +
Sbjct: 985 EAMRFPLNSNMFIFGVNSLISFANRLVEWPQYWAQICSIDHFRDNYGDIILSVNKII 1041
Score = 587 (211.7 bits), Expect = 7.5e-125, Sum P(5) = 7.5e-125
Identities = 121/270 (44%), Positives = 173/270 (64%)
Query: 943 FGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYY 1002
F + + I TL+ A++ P + +DKI FIINNIS N++ KAK+ +ILK +YY
Sbjct: 1224 FSTTIPIGTLLNASKEMIQPDDI----TKDKIYFIINNISQNNLDVKAKDLKDILKPEYY 1279
Query: 1003 PWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSE 1062
+FAQY+V+KR SIE NFH LYL F+D++ ++ ++ +++N LL SE I+
Sbjct: 1280 DYFAQYLVVKRVSIEANFHALYLAFIDRLCIPTISERVLFHSHQNVHTLLKSEKIRVDHS 1339
Query: 1063 ERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSS 1122
ERSLLKNLG WLG T+ RN+ L + I PK L+I A E GL+IA++PF +K+LE CQ S
Sbjct: 1340 ERSLLKNLGGWLGLNTLARNKPLLQKVISPKDLLIYAAENGLLIAIVPFVAKLLEHCQQS 1399
Query: 1123 LAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRK-- 1180
++PPNPW MAIL L+ EIY + K N+KF++E+L NL VD+ + PT++L DR+
Sbjct: 1400 KVFRPPNPWVMAILRLMVEIYQLKESKNNIKFEVELLCNNLSVDINTVKPTTILADRRQQ 1459
Query: 1181 REIEGNPDFSNKDVGASQPQLVPEVKPAIV 1210
REIE + KD S L+ + +V
Sbjct: 1460 REIEQQEENMRKDNKQSSIDLLSNLPRYLV 1489
Score = 113 (44.8 bits), Expect = 7.5e-125, Sum P(5) = 7.5e-125
Identities = 22/60 (36%), Positives = 40/60 (66%)
Query: 1289 IPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLK 1348
+ N+ +++ + A F++ VP+A D+A++EI++ +V+RSV+IA T+KELV K
Sbjct: 1481 LSNLPRYLVYTPSIGAYAQSPIFKKAVPLAFDKAVREIIAPVVERSVAIAVITSKELVSK 1540
Score = 86 (35.3 bits), Expect = 2.5e-64, Sum P(5) = 2.5e-64
Identities = 24/127 (18%), Positives = 61/127 (48%)
Query: 165 QRSSDLSKHVDSLMQILSLLQS-KDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDD-- 221
Q++S ++ +++ LQS L+P++ ++ + + + D+
Sbjct: 330 QQNSQQQQNQQHYSEVIKYLQSISPPNSLALSPLVDNDQSSGSGGGGITNSKRLQQDNPS 389
Query: 222 -FDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHA 280
+ I++++ ++ +++ +GY + AS K+IL F LTE +++I+ ++A +
Sbjct: 390 YVNSIISKVSQQNVPYQIISSIGYSSCSSASTLKDILFQFQKLTESDIAQIIVSMAELTS 449
Query: 281 GLEDNQN 287
+N N
Sbjct: 450 NTNNNNN 456
Score = 65 (27.9 bits), Expect = 7.5e-125, Sum P(5) = 7.5e-125
Identities = 26/112 (23%), Positives = 50/112 (44%)
Query: 73 FKYIMDKPNFSTVFSQSVKITEI-NEQLLENLSDVLNLSLPERIGIGLALSDSENLDALM 131
F + +P+F +V ++ E+ N + L + S L L+ I +GLALS S + +
Sbjct: 197 FSRLTKQPHFISVLCKAFDGYEVLNNEFLVHFSSTLKLTPSHEIMLGLALSQSLDKEVRE 256
Query: 132 CGKNFCM---AQIERLCANPVPMNSAEQIQNIIMF-LQRSSDLSKHVDSLMQ 179
F + Q+ + +P N Q+ + F +Q ++ L + + Q
Sbjct: 257 QADKFLLNTLIQLSQSNTKSLPENLLHQL--LYKFKIQETNQLQQQNNQQQQ 306
Score = 58 (25.5 bits), Expect = 7.5e-125, Sum P(5) = 7.5e-125
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 4 LSSTVPSQIRFLLQSLNEANADSVFRELCQFI-EYGIEGSTMMLQTCMDHLNLHGT 58
LS + +QI+ L+ +L + + S EL Q I +YG + + + +D ++ T
Sbjct: 92 LSFVIATQIKNLISNLTKKSYKSNSSELSQIINQYGSQAEIYIFRCLVDSIDFKNT 147
Score = 50 (22.7 bits), Expect = 6.1e-62, Sum P(4) = 6.1e-62
Identities = 28/111 (25%), Positives = 48/111 (43%)
Query: 1128 PNPWTMAI-LGLLAEIYSMPNLKMN-------LKFDIEVLFKNLGVD--MKDITPTSLLK 1177
P+P+T + + +L +I P + N LK +I+ FKN G + D+ LL
Sbjct: 2296 PDPFTPNLKIDMLPDINQPPKISSNFTASLKGLKIEIDNYFKNRGPYSFLLDLKNKHLLL 2355
Query: 1178 DRKREI-----EGNPDFSNKDVGASQPQLVPEV-KPAIVSPLGHVDLPLDV 1222
K EI + N N V +P++ + + V+P P+D+
Sbjct: 2356 TDKEEILAAGTKYNVPLINSLVLYIGTLAIPQIQRKSGVAPTPSQSAPMDI 2406
Score = 49 (22.3 bits), Expect = 1.4e-07, Sum P(5) = 1.4e-07
Identities = 20/69 (28%), Positives = 29/69 (42%)
Query: 932 ARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKI-SFIINNISALNVEAKA 990
A P + + + F NI + AE T PA EV+D+ S+ I S E
Sbjct: 857 AAPDQ-IPTDLFNDLKNISAALQTAESETTERRFPA-EVEDETNSYFIKLYSG---EISV 911
Query: 991 KEFTEILKE 999
+ +LKE
Sbjct: 912 DQIISVLKE 920
>FB|FBgn0085436 [details] [associations]
symbol:Not1 "Not1" species:7227 "Drosophila melanogaster"
[GO:0048813 "dendrite morphogenesis" evidence=IMP] [GO:0007517
"muscle organ development" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IMP] [GO:0030014 "CCR4-NOT complex"
evidence=IDA] [GO:0007095 "mitotic G2 DNA damage checkpoint"
evidence=IGI] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] EMBL:AE013599 GO:GO:0005737
GO:GO:0007095 GO:GO:0048813 GO:GO:0007517 GO:GO:0030014
GO:GO:0000289 KO:K12604 OMA:YLKARAP InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054
GeneTree:ENSGT00390000014869 UniGene:Dm.4102 GeneID:5740252
KEGG:dme:Dmel_CG34407 CTD:5740252 FlyBase:FBgn0085436 ChiTaRS:NOT1
GenomeRNAi:5740252 NextBio:20891292 RefSeq:NP_001097242.1
RefSeq:NP_724798.3 STRING:A8DY81 EnsemblMetazoa:FBtr0112672
EnsemblMetazoa:FBtr0304957 UCSC:CG34407-RC PhylomeDB:A8DY81
Bgee:A8DY81 Uniprot:A8DY81
Length = 2505
Score = 611 (220.1 bits), Expect = 1.2e-109, Sum P(5) = 1.2e-109
Identities = 153/428 (35%), Positives = 229/428 (53%)
Query: 932 ARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAK 991
A S +A NI+TL+ A +E + P VQDK +FI NN+S LN+ K
Sbjct: 1118 AAVSHATRMKSIANATNIDTLLVA--NQEEKVTVPPEPVQDKTAFIFNNLSQLNIPQKCD 1175
Query: 992 EFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVL 1051
E EI+ ++Y+PW AQY+V+KRAS+E NFH LY FLD + + +NR + + T N KVL
Sbjct: 1176 EIKEIMTKEYWPWLAQYLVLKRASMEFNFHTLYYNFLDALKNGEINRFVTKETLRNIKVL 1235
Query: 1052 LGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVI 1109
L S+ + +RSLLKNLG WLG +T+GRN+ + ++D KSL+ EAY KG ++ V+
Sbjct: 1236 LRSDKGVINFSDRSLLKNLGHWLGMMTLGRNRPILQLDLDLKSLLAEAYHKGQQELLFVV 1295
Query: 1110 PFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKD 1169
PF +KILE S ++ PNPWTM I+ +LAE++ P+LK+NLKF+IEVL K L +++
Sbjct: 1296 PFVAKILESSAKSRIFRSPNPWTMGIMYVLAELHQEPDLKLNLKFEIEVLCKTLNLELAK 1355
Query: 1170 ITPTSLLKD--RKREIE---GNPDFSNKDVGASQPQLVPEVK-PAIVSPLGHVDLP--LD 1221
+ LKD R IE P + AS P L E + PA P P
Sbjct: 1356 LRQVIYLKDPNRTHRIEEQMSQPKPKQLEPVASAPALPREQQSPAQPPPPPQQQQPPQQQ 1415
Query: 1222 VASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFS 1281
V PP+S +Q AA + +++G + S LP+ + +S
Sbjct: 1416 VPPPPSSADVD---AQNAAAMMMAAGGANSTPGSVS---SPNLPTDSSQVALPPPEPRYS 1469
Query: 1282 VSQLSTP-IPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQ 1340
++ IG +++ L + + +V A++R I + + IV RS+ IA
Sbjct: 1470 YVDVNVSNFQLIGQQLVLPPNTPFLHANPGIKHMVVNAVERTITDWLQPIVDRSIRIACA 1529
Query: 1341 TTKELVLK 1348
TT++++ K
Sbjct: 1530 TTEQIIRK 1537
Score = 359 (131.4 bits), Expect = 1.2e-109, Sum P(5) = 1.2e-109
Identities = 73/152 (48%), Positives = 103/152 (67%)
Query: 668 DIEAEANSYFHQMFSGQ----LTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFF 723
++E E NSYF ++++ Q L+I+ ++ +L RFKESS +RE +F CM+ NLFEEYRFF
Sbjct: 911 EVEDEVNSYFQRIYNHQPNPTLSIDEVLDILQRFKESSNRREQEVFLCMLRNLFEEYRFF 970
Query: 724 PKYPERQLRIAAVLFGSIIKHQLV-THLTLGIALRGVLDALRKPADSKMFVFGTKALEQF 782
+YPE++L+I A LFG II LV T + LG++LR VLDALRKP SK++ FG AL++F
Sbjct: 971 CQYPEKELQITAQLFGGIIDRNLVPTFVALGLSLRCVLDALRKPDGSKLYYFGVTALDRF 1030
Query: 783 VDRLIEWPQYCNHILQISHLRSTHAELVAFIE 814
RL + +YC HI I H L+ ++E
Sbjct: 1031 RTRLHTYNKYCEHIRSIPHFSDFPPHLIQYVE 1062
Score = 262 (97.3 bits), Expect = 1.2e-109, Sum P(5) = 1.2e-109
Identities = 70/286 (24%), Positives = 132/286 (46%)
Query: 309 SWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYAC-QEPFPLHA 367
+W DV V+A+K++ P NW V LD+ F + +++ + A FP H
Sbjct: 410 TWKPDVFVQALKEVVPQLNWKDVCMELDHPEFVLKDRIGLELLLTILRLATGSNIFP-HP 468
Query: 368 VC-GSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWXXX 426
C W NTEGQLS + + +P ++F+FA P +D + + +W
Sbjct: 469 ECIYRHWANTEGQLSLIATMLKNP-DLFSFADFVFSQPALDVLKTAPDADNKEISSWKSL 527
Query: 427 XXXXXXXXXSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMII 486
++ G+ + + ++P + CP++L L + + + ++ ++ + P +
Sbjct: 528 HLVEVLLSIADKGYYTQVHELFKFPAQNCPDVLFLALLNTSPPMTPLRQDLFNQLIPTFL 587
Query: 487 KSTMSNGMIL-HIWHVNPNIVLRG---------FVDAQNMEPDCTIRILEICQELKILSS 536
+ ++ +IL W N N LR ++ + RIL++ Q+LK LS+
Sbjct: 588 GNHPNSNVILASAWSSN-NFQLRSNIMNAMSEWYLRGNEFDQVKLSRILDLAQDLKALSA 646
Query: 537 VLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLK 582
+L F I LA +AS++E + LEKWL+ + + + F + +K
Sbjct: 647 LLNARSFLFIIDLACLASRREYLKLEKWLTDKIREHGEPFMQAIIK 692
Score = 60 (26.2 bits), Expect = 1.2e-109, Sum P(5) = 1.2e-109
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 7 TVPSQIRFLLQSLNEANADSVFRELCQFI-EYGIEGSTMMLQTCMDHLN 54
T P+ IR L++ +N+ N + ++ QF+ E+G+E L+ +N
Sbjct: 9 TPPTHIRNLVKHVNKRNFNESSEQINQFVKEHGLEADRSSLRHLFSVIN 57
Score = 60 (26.2 bits), Expect = 1.1e-18, Sum P(4) = 1.1e-18
Identities = 30/108 (27%), Positives = 41/108 (37%)
Query: 1198 QPQLVPEVKPAIVSPLGH--VDLPLDVASPPN----SGG-PTHLLSQYAAPLRLSSGTLM 1250
QP LVP P I+ GH +DLP + PP SG + PL S L
Sbjct: 767 QPGLVPPPPPTILR--GHRGMDLPGGIVPPPPQQPFSGNLNAQMFGPGMDPLTNMSNNLA 824
Query: 1251 E---DEKLAALGISDQLPSAQGLFQASQSQSPFSVSQL--STPIPNIG 1293
A + L S L + P ++ Q+ + P PN+G
Sbjct: 825 GLNLSGPNGAFNFGNMLTSPSRLMTPGANPYPLNLMQMPQAPPPPNVG 872
Score = 50 (22.7 bits), Expect = 1.2e-109, Sum P(5) = 1.2e-109
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 241 ELGYGCSADASQCKEIL-SLFTPLTEIT---LSRILGAIARTHAGLED-NQN 287
E+GY ++ +CK L S E+ +++I+G + R H+ L D N N
Sbjct: 296 EIGYEFTSSVEECKNHLCSRERERAELQSKDVAKIVGLMCRRHSSLLDCNVN 347
Score = 45 (20.9 bits), Expect = 8.8e-87, Sum P(4) = 8.8e-87
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 632 KLSEEIEKFQAVVLDSTPRLQNGEAADSSTSEGYADDIEAEANS 675
KL EE + QAV L P L A + + D EAEA +
Sbjct: 206 KLREEFPR-QAVPLVLAPFLYGSTTATIAGAGASETDAEAEATT 248
Score = 44 (20.5 bits), Expect = 2.0e-16, Sum P(5) = 2.0e-16
Identities = 21/84 (25%), Positives = 36/84 (42%)
Query: 744 HQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLR 803
HQ+V +L G+A+ D + + + KAL + L P L
Sbjct: 1553 HQMVRNLAAGMAMITGKDEIARAISQNLH----KAL---LSGLNGMPSMAEIQAAAMQLA 1605
Query: 804 STHAELV-AFIERALARISSGHLE 826
S + ELV AFI++ A ++ ++
Sbjct: 1606 SENVELVCAFIQKTSAEKAAAEID 1629
Score = 40 (19.1 bits), Expect = 2.9e-86, Sum P(4) = 2.9e-86
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 53 LNLHGTGLKNPQLESVVASVF 73
L+L T LKNP L S VF
Sbjct: 482 LSLIATMLKNPDLFSFADFVF 502
Score = 40 (19.1 bits), Expect = 8.7e-49, Sum P(5) = 8.7e-49
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 1146 PNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKD 1178
PNLK+++ D K L + +I P + KD
Sbjct: 2266 PNLKVDMLSDSSNAPKVLSSYIMNIQPANFKKD 2298
Score = 39 (18.8 bits), Expect = 4.1e-53, Sum P(2) = 4.1e-53
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 31 LCQFIEYGIEG 41
L Q++EYG+ G
Sbjct: 1057 LIQYVEYGMHG 1067
Score = 39 (18.8 bits), Expect = 1.1e-48, Sum P(5) = 1.1e-48
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 1228 SGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQ 1263
+G PT ++ L + GTL++D ++ G+S Q
Sbjct: 2071 AGNPTTKINLLNKVLGIVLGTLIKDHEMR--GVSFQ 2104
Score = 38 (18.4 bits), Expect = 4.8e-86, Sum P(4) = 4.8e-86
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 325 NTNWIRVVENLDYEGFYIPTEE 346
+T+WI ++ + YE F EE
Sbjct: 287 DTSWINLILEIGYE-FTSSVEE 307
>POMBASE|SPAC20G8.06 [details] [associations]
symbol:not1 "CCR4-Not complex subunit Not1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0006354 "DNA-dependent transcription,
elongation" evidence=IC] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006402 "mRNA catabolic process"
evidence=IC] [GO:0030015 "CCR4-NOT core complex" evidence=ISO]
PomBase:SPAC20G8.06 GO:GO:0005829 GO:GO:0005634 EMBL:CU329670
GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0000289 GO:GO:0030015
GO:GO:0006354 eggNOG:COG5103 KO:K12604 InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054 PIR:T38128
RefSeq:NP_593323.1 ProteinModelPortal:P87112 STRING:P87112
EnsemblFungi:SPAC20G8.06.1 GeneID:2542001 KEGG:spo:SPAC20G8.06
OMA:ANIAGTR OrthoDB:EOG4SFDF0 NextBio:20803082 Uniprot:P87112
Length = 2100
Score = 475 (172.3 bits), Expect = 1.1e-79, Sum P(3) = 1.1e-79
Identities = 175/672 (26%), Positives = 313/672 (46%)
Query: 187 KDHTQFVLNPVLPDELHDATSLRDLDLFHE-CRDDDFDDI-LAEMEKEMSMGDVMNELGY 244
K+ Q +LN + + DLDL E D+D I L ++ K D + E
Sbjct: 181 KNTFQSLLNQLSDPTQQQSIDKNDLDLLREGLFTTDYDRIPLIKVPKF----DAIIE--- 233
Query: 245 GCSADASQCKEILSLFTPL--TEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMS 302
+ + + +LF P+ ++ TL + AI + + T + +A +++
Sbjct: 234 ---KKLANSRPLTALFGPMKASKATLKSMKEAILKKYP-----PGTATETDVAYLINSLV 285
Query: 303 DLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEA----FSFFMSVYKYA 358
+ +W+ ++ KAI N NW ++ D F I + F+ F + YK
Sbjct: 286 AIHDYGAWDTVLMGKAIVSSFENLNWEAMLSMFDNPKFMITGTPSLVLFFTIFTNAYKLR 345
Query: 359 CQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQ 418
Q F L + +W+N QLS + + + SP +F P V +V LK S +
Sbjct: 346 -QTNFTLDFLW-VLWRNPLPQLSIISHIILSPTSMFDI-REFNVNPVV-SVDSLKDYSEE 401
Query: 419 -ANHAWXXXXXXXXXXXXSEM------GHASFARSM-LEY-PLKQCPEMLLLGMAHINTA 469
N+A ++ ++ S+ L + K E+LLLG + A
Sbjct: 402 LVNYAKIYEKSNLNCIELVQILLRLLSEVVTYETSLFLNFLDEKVSAELLLLGTLQLPLA 461
Query: 470 YNLIQYEVSFAVFPMIIKSTMSNGMI-LHIWHVNPNIVLRGFVDAQNMEPDCTI-RILEI 527
+N +Q ++F + + + + I NP + F+ + ++ ++ +++E
Sbjct: 462 WNPVQESLAFQWCSDFFSNFKEHKFVFVRIERTNPQFLF-AFLRSLWLKDSSSVNQVVEF 520
Query: 528 CQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKD-----VFFEECLK 582
E S + + P+ FA+ +A +A+ ++ + + WL + ++D VF E L
Sbjct: 521 IIENDFTSHIGNIQPNRFALEIAALAAARKALSFQDWLDKKMLEFEDADGLNVFLVEVLD 580
Query: 583 FVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQA 642
F+ + ++ S Q +L++ + + V+L L ++ + S ++SE I+ Q
Sbjct: 581 FLMS-RAALQKNESEQK--EESVVLSI--DTVNVLLTTLMDNVSI--SEEVSEHIKDVQI 633
Query: 643 VVLDSTPRLQN-GEAADS-----STSEGYADDIEAEANSYFHQMFSGQLTIEAMVQMLAR 696
+ L PRL + G DS +T+ ++ D+E+E SYF ++ +++I +V L
Sbjct: 634 LCLQVYPRLFSLGHDRDSIVIATNTTNSFSPDVESEVESYFQALYERRISIGKIVLTLQN 693
Query: 697 FKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIAL 756
FK+S R+ +F C+ +LF+EYRFFP YP L + AVLFGS+I+ +L++ + LG+AL
Sbjct: 694 FKKSENPRDLDLFACLQHSLFDEYRFFPDYPLEALALTAVLFGSLIQFELLSFVPLGVAL 753
Query: 757 RGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERA 816
R V AL P DSKMF FG +AL QF ++L ++ YCN IL I L+ ++ I
Sbjct: 754 RYVYQALLMPTDSKMFRFGMQALVQFQEKLPKYINYCNLILGIPSLQLVRPDIYDSIREM 813
Query: 817 LARISSGHLESD 828
+A + +E D
Sbjct: 814 IASNENTEVEKD 825
Score = 431 (156.8 bits), Expect = 1.1e-79, Sum P(3) = 1.1e-79
Identities = 124/403 (30%), Positives = 203/403 (50%)
Query: 962 PIEAPASE------VQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRAS 1015
P+ P +E V D I F INN+S LN K K+ + L Y PWF+ Y+V +R S
Sbjct: 853 PLNVPNAEGEIEESVCDNILFAINNLSQLNFNEKLKDVKDNLTPAYLPWFSHYIVTQRVS 912
Query: 1016 IEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLG 1075
E NF LY KFL+++ S L + + + T + ++ + S E++ LKNLGSWLG
Sbjct: 913 REANFLSLYGKFLEELKSSDLYKIVFRDTLQAILDIMNNNAETLSPSEKTNLKNLGSWLG 972
Query: 1076 KLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAI 1135
+T+ RN+ + ++ K L++E + G + V+PF K+LE SS+ ++PPNPW M I
Sbjct: 973 SITLLRNKPITTLQVSFKDLLLEGIDSGRIDRVLPFVCKVLEKASSSVIFKPPNPWLMGI 1032
Query: 1136 LGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKD---RKREIEGN-P-DFS 1190
L LL E+Y + ++NLKF+IE+L NL V M +I P+ + ++ +K ++E P D
Sbjct: 1033 LKLLVELYQFADFRLNLKFEIELLLNNLNVKMDNIEPSEMYRNHLVQKADLEKELPEDVL 1092
Query: 1191 NKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSG--GPTHLLSQYAAPLRLSSGT 1248
N + ++ + A S + D V P T L+ Q + L + S
Sbjct: 1093 NAEF-PDGTDVITQYIVAASSQITVTDAVAQVFGKPKPAIKNITQLIIQQSV-LEIISAV 1150
Query: 1249 LMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLH 1308
+ +AA+ + L +++ S+ + Q++ + V + L L ++
Sbjct: 1151 VRRSVGIAAI-TTKSLLQKDFAAESNPSRLLLAARQMAKTLAGNLAMVTCREPLQMLMIN 1209
Query: 1309 ----LHFQRV--VPIAMDRAIKEIVSG--IVQRSV--SIATQT 1341
+ Q V V A+ +AI E+VS V SV S+A++T
Sbjct: 1210 NFRTIALQDVENVHAAVAQAIDELVSQNLFVASSVIESVASET 1252
Score = 73 (30.8 bits), Expect = 3.0e-42, Sum P(3) = 3.0e-42
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 1312 QRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLK 1348
+ + + + +++ EI+S +V+RSV IA TTK L+ K
Sbjct: 1132 KNITQLIIQQSVLEIISAVVRRSVGIAAITTKSLLQK 1168
Score = 53 (23.7 bits), Expect = 1.1e-79, Sum P(3) = 1.1e-79
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 3 RLSSTVPSQIRFLLQSLNEANADSVFRELCQFI 35
++ S V +QI FLL +L E D+ ++ Q I
Sbjct: 38 KIESIVKAQILFLLSTLREDQYDTKLEQIRQLI 70
Score = 37 (18.1 bits), Expect = 1.7e-38, Sum P(3) = 1.7e-38
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 993 FTEILK-EQYYPWFAQYM 1009
FTE+LK E Y W Y+
Sbjct: 2045 FTELLKNEDYNFWKHPYI 2062
>ASPGD|ASPL0000078074 [details] [associations]
symbol:AN4965 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] EMBL:BN001303 EMBL:AACD01000084
eggNOG:COG5103 KO:K12604 InterPro:IPR007196 InterPro:IPR024557
Pfam:PF12842 Pfam:PF04054 OrthoDB:EOG4SFDF0 OMA:VIQEQIN
RefSeq:XP_662569.1 ProteinModelPortal:Q5B3B5 STRING:Q5B3B5
EnsemblFungi:CADANIAT00005431 GeneID:2872761 KEGG:ani:AN4965.2
HOGENOM:HOG000196837 Uniprot:Q5B3B5
Length = 2317
Score = 539 (194.8 bits), Expect = 4.9e-77, Sum P(3) = 4.9e-77
Identities = 102/226 (45%), Positives = 150/226 (66%)
Query: 966 PASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYL 1025
P EVQDKI F++NN+S N++ K ++ T++LK+ ++ WFA Y+V +RA ++PNF LYL
Sbjct: 1059 PDEEVQDKILFVLNNVSEQNIDEKLRDLTDVLKDPHHQWFASYLVEERAKLQPNFQQLYL 1118
Query: 1026 KFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVL 1085
LD+++ K L E+++ TY + LL SE SS ER LKNLGSWLG LTI +++ +
Sbjct: 1119 DLLDRIDDKILWVEVLRETYASTSKLLNSEATLGSSTERGHLKNLGSWLGSLTIAKDKPI 1178
Query: 1086 RAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSM 1145
+ + I K L++EAY+ + VIPFT K+L S ++PPNPW M I+ LL E+Y
Sbjct: 1179 KHKHIWFKGLLLEAYDSQRLTIVIPFTCKVLVQATKSTVFKPPNPWLMDIIALLMELYHF 1238
Query: 1146 PNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEGNPDFSN 1191
LK+NLKF+IEVL K+L +D K I P+ +++DR IE + +N
Sbjct: 1239 AELKLNLKFEIEVLCKDLEIDHKAIEPSVIIRDRSTTIEESLSTAN 1284
Score = 300 (110.7 bits), Expect = 4.9e-77, Sum P(3) = 4.9e-77
Identities = 114/502 (22%), Positives = 220/502 (43%)
Query: 327 NWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQEP-FPLHAVCGSVWKNTEGQLSFLRY 385
NW + + D EG + + + ++ A ++ + + G W++ + Q+SFL
Sbjct: 504 NWSLIFRHFDREGLRLDARQFAKLYAALSPIAAEDSTLDVQQLWGGEWEHRDTQMSFLTA 563
Query: 386 AVASPPEVFTFAHSARQLP---YVDAVPGLKLQSGQAN----HAWXXXXXXXXXXXXSEM 438
+ S + + P + D ++LQ +A + S+
Sbjct: 564 FINSRTDASQIPNLRATFPHDFFSDGPEPVRLQGERAAKSPLRSLDATRAIFDLALYSQA 623
Query: 439 GHASFARSMLEYPLKQ--CPEMLLLGMAHINTAYNLIQYEV---SFAVFPMIIKSTMSNG 493
A+ ML + Q P L +A + + +Q + AVF I+K
Sbjct: 624 AWAAAESQMLIKAVVQYDLPVFLCSALA-LPQPWTSVQQSFLLRTLAVF--IMKQEEGYQ 680
Query: 494 MILH-IWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVI 552
+ LH W + V +P T I E E L +L + A+ LA
Sbjct: 681 LALHGAWRQDKQWVADQLFAMFTQDPTSTAAIYEHAIEYNWLEYLLGYT-NGLAMDLACY 739
Query: 553 ASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHH-SGALLNLYM 611
A +K +LE+W+ N ++ K + L K ++ + Q + +++L +
Sbjct: 740 AHRKGPFELEQWVR-NAAS-KGLMDMGTL-LSKYLRIKADDELRVQRREQLAPQMVSLSV 796
Query: 612 EKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQN-GEA----ADSSTSEGYA 666
+ + +L +L+ ++G + + Q + + + PRL N GE D++ G A
Sbjct: 797 KTVFTLLSVLEEYVGD------PQNLTPVQRICIQTYPRLINYGEGFDDIIDANGESGNA 850
Query: 667 --DDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFP 724
+ ++ + F +M+ +L++ +++++ ++K S E +F CM+ L +EY +
Sbjct: 851 LPEPVDKKMQELFGKMYHEELSLREILELMRQYKSSRDPAEQDLFACMVHGLIDEYHCYH 910
Query: 725 KYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRK-PADSKMFVFGTKALEQFV 783
+YP L AV+FG II +LV +TL + L +L+A+R+ M+ FG +A+EQ +
Sbjct: 911 EYPLEALTKTAVMFGGIINFRLVDGITLKVGLGMILEAVREHDIHDPMYKFGVEAIEQLI 970
Query: 784 DRLIEWPQYCNHILQISHLRST 805
+RL EW +C+ +LQI L+ +
Sbjct: 971 NRLPEWVGFCHLLLQIPSLQGS 992
Score = 94 (38.1 bits), Expect = 4.9e-77, Sum P(3) = 4.9e-77
Identities = 27/101 (26%), Positives = 58/101 (57%)
Query: 1252 DEKLAALGISDQLPSAQGLFQASQSQS----PFSVSQLSTPIPNIGTHVIINQKLTALGL 1307
+E L+ I + L + + + S SQS S + + + +P++ +++ +++
Sbjct: 1277 EESLSTANIPEGLEAFEDMALTSISQSIRNERLSPAAILSTLPSLDKILVLPPSASSMVD 1336
Query: 1308 HLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLK 1348
+++V A++RAI EI++ +V+RSV+IA+ +T +LV K
Sbjct: 1337 SNVLRQIVHSAVERAIAEIITPVVERSVTIASISTVQLVSK 1377
Score = 55 (24.4 bits), Expect = 2.2e-51, Sum P(3) = 2.2e-51
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 872 SESVVDDRHKVSAASSSDMKPLLSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGF 931
S+S V R ++ +++ P +S GQP S +P S++ L ++ SA +LS S G
Sbjct: 39 SQSSV--RRGLTPLATNLSNPSVSGRGQPQSNSPGPGVSTSSPLTSSFSA--VLSSSRGH 94
Query: 932 ARPSRGVTS 940
RGV S
Sbjct: 95 PL-GRGVPS 102
Score = 42 (19.8 bits), Expect = 4.9e-50, Sum P(3) = 4.9e-50
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 884 AASSSDMKPLLS--SIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGF 931
++ + PLLS ++ P+ P D + H + S+ A +SI+ F
Sbjct: 166 SSRGATFSPLLSGTTVNSPTGFPP--DKPGSVAAHGSQSSLAKISIAQVF 213
Score = 41 (19.5 bits), Expect = 6.3e-50, Sum P(3) = 6.3e-50
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 877 DDRHKVSAASSSDMKPLLSSIGQPSSVA 904
D R K A ++ + P L S+ PS +
Sbjct: 341 DLRVKADAILANSITPFLQSLASPSDAS 368
Score = 39 (18.8 bits), Expect = 2.8e-71, Sum P(3) = 2.8e-71
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 1267 AQGLFQASQSQSPFSVSQLSTPIPNIGT 1294
AQ + S Q P + + PIPN+ T
Sbjct: 1533 AQNVSTDSGRQLPDVLQEPYPPIPNLST 1560
Score = 37 (18.1 bits), Expect = 4.6e-71, Sum P(3) = 4.6e-71
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 1231 PTHLLSQYAAPLRLSSGTLMEDEKLA 1256
P+ L S ++ L S L ED LA
Sbjct: 1760 PSALRSDFSGSLEAMSKWLAEDSGLA 1785
>WB|WBGene00002845 [details] [associations]
symbol:let-711 species:6239 "Caenorhabditis elegans"
[GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds"
evidence=IEA] [GO:0005975 "carbohydrate metabolic process"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0010467 "gene
expression" evidence=IMP] [GO:0040001 "establishment of mitotic
spindle localization" evidence=IMP] [GO:0030953 "astral microtubule
organization" evidence=IMP] [GO:0010468 "regulation of gene
expression" evidence=IMP] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=IMP] [GO:0017148 "negative regulation
of translation" evidence=IMP] GO:GO:0008340 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0010467
GO:GO:0002119 GO:GO:0017148 GO:GO:0018996 GO:GO:0040011
GO:GO:0000003 GO:GO:0000956 GO:GO:0030953 EMBL:FO081266
GO:GO:0040001 eggNOG:COG5103 KO:K12604 InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054
GeneTree:ENSGT00390000014869 STRING:Q20937 PaxDb:Q20937
EnsemblMetazoa:F57B9.2 KEGG:cel:CELE_F57B9.2 UCSC:F57B9.2
CTD:175971 WormBase:F57B9.2 HOGENOM:HOG000020862 InParanoid:Q20937
OMA:HMDHEVR NextBio:890552 Uniprot:Q20937
Length = 2641
Score = 527 (190.6 bits), Expect = 1.0e-72, Sum P(4) = 1.0e-72
Identities = 151/462 (32%), Positives = 234/462 (50%)
Query: 905 PLGDTS--SAQKLHNAVSAPAMLSISSGFAR--PSRGVTSTKFGSAL---NIETLVAAAE 957
P+G SA +AP + A P + + + G+ L N++TLV A
Sbjct: 1203 PVGSAQAGSASSTPTPAAAPTNWGAVARAASVDPKNSLPANRTGNVLSYTNVDTLVMATN 1262
Query: 958 RRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQ---YYPWFAQYMVMKRA 1014
+ I PA + DKISF+ NN+S N+ K E E++ + + W AQY+VMKR
Sbjct: 1263 KDGAEIAQPAEAIVDKISFLFNNLSQSNLIQKKDEVVEMISDHGDAFTLWLAQYIVMKRV 1322
Query: 1015 SIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSE---LIKSSSEERSLLKNLG 1071
SIE NF LY +F++ + + L++ I + T+ N ++LL ++ + S+ +R LLKNLG
Sbjct: 1323 SIEQNFQPLYNQFVNAIENPYLDQCIKRETFRNIRILLRTDKRTTVASNYSDRQLLKNLG 1382
Query: 1072 SWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAYQPPN 1129
SWLG +TI RN+ + ++D KSL++EAY KG ++ V+PF SKIL C + + P
Sbjct: 1383 SWLGAITIARNKPILLNDLDLKSLLLEAYYKGQAELLYVVPFISKILTACSKTSLFTPTC 1442
Query: 1130 PWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEGNPDF 1189
W +IL +LAE+++ P+LK+NLKF+IEVL K L VD+ + +LKD ++ +
Sbjct: 1443 AWIRSILKVLAELHNEPDLKINLKFEIEVLCKELNVDLNQLQMDGILKDTEKLVRVPQQL 1502
Query: 1190 SNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASP--PNSGGPTHLLSQYAAPLRLSSG 1247
+ + ++P+ V+ I G + L SP P+ P + L SG
Sbjct: 1503 CDVKL-LTRPEAASPVQSKIHMS-GSAE-QLSGMSPAIPDQVKPA---TPQPTEAELQSG 1556
Query: 1248 TLMEDEKLAALGISDQLPSAQGLFQASQ-SQSPFSVSQLSTPIPNIGTHVIINQKLTALG 1306
T G Q AQ + + + +V IP HV I L
Sbjct: 1557 TG---------GGGSQGAEAQVVPNVTHFAYHDINVLTYDGLIP----HVKIVSHLPLFQ 1603
Query: 1307 LHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLK 1348
LH H + +V AM AIKE++ + +R++ IA T+ LV K
Sbjct: 1604 LHPHAKHLVRPAMIHAIKELIGPVTERALKIAMTVTESLVRK 1645
Score = 277 (102.6 bits), Expect = 1.0e-72, Sum P(4) = 1.0e-72
Identities = 49/135 (36%), Positives = 90/135 (66%)
Query: 665 YADDIEAEANSYFHQMFS--GQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRF 722
+A+DI+ EANSYF +++S +++E ++ +L RF+ S+ +RE + C++ NLFEEYRF
Sbjct: 1036 FAEDIQEEANSYFEKIYSVNNAMSVENLIDLLKRFRVSNDRRERLVLACVVKNLFEEYRF 1095
Query: 723 FPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQF 782
F +YPER+LR A ++G II+ +++++ A+R V+++L ++ ++ FG AL+
Sbjct: 1096 FHEYPERELRTTAAVYGGIIREDIISNVQFATAVRKVIESLSADPNTMLWTFGIVALQHC 1155
Query: 783 VDRLIEWPQYCNHIL 797
+L +P+ C I+
Sbjct: 1156 RSKLCAYPKVCQMIV 1170
Score = 79 (32.9 bits), Expect = 1.0e-72, Sum P(4) = 1.0e-72
Identities = 18/68 (26%), Positives = 38/68 (55%)
Query: 523 RILEICQELKI--LSSVLEMIPS--PFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFE 578
+IL++ ++K LS +L P F + LA +AS+++ ++LEKW+ + +
Sbjct: 647 KILDVAHDIKPTGLSELLNQAPKHLAFMVDLACLASKRDYLNLEKWIEDKEKAHGEAMTV 706
Query: 579 ECLKFVKE 586
L+F+++
Sbjct: 707 AVLQFIQK 714
Score = 63 (27.2 bits), Expect = 1.0e-72, Sum P(4) = 1.0e-72
Identities = 15/65 (23%), Positives = 29/65 (44%)
Query: 324 PNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQ-EPFPLHAVCGSVWKNTEGQLSF 382
P+ NW+ V++ D E F I + F ++ Q + FP+ + W+ + QL
Sbjct: 439 PDINWVEVIKEFDSEEFAI-CRQTIIMFADIFPIMFQPQNFPVSFFL-TPWRYYDHQLRL 496
Query: 383 LRYAV 387
+ +
Sbjct: 497 FEFMI 501
Score = 43 (20.2 bits), Expect = 3.0e-21, Sum P(5) = 3.0e-21
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 1256 AALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGT 1294
A +GI DQ S F+A+ + P S S I + T
Sbjct: 1787 ALMGIYDQFSSRICGFKANSGEDPVSAEPGSGAITPVQT 1825
Score = 43 (20.2 bits), Expect = 3.0e-21, Sum P(5) = 3.0e-21
Identities = 17/79 (21%), Positives = 31/79 (39%)
Query: 923 AMLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNIS 982
AM++ A + F S+L + A E ++ +A A+ QD + N I
Sbjct: 1672 AMITCRDPLASSMHSNLANAFSSSLR--STAANPEMKQMIEDAAATITQDNVELSTNFIV 1729
Query: 983 ALNVEAKAKEFTEILKEQY 1001
E ++ + L+ Y
Sbjct: 1730 KTACEKATQDIEKRLEADY 1748
Score = 38 (18.4 bits), Expect = 7.4e-48, Sum P(4) = 7.4e-48
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 905 PLGDTSSAQKLHNAVSAPAMLSISSGFA 932
P T+S Q++H S P + + FA
Sbjct: 830 PTPPTTSQQQIHVQQSVPGPIQRPAQFA 857
>GENEDB_PFALCIPARUM|PF11_0049 [details] [associations]
symbol:PF11_0049 "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] EMBL:AE014186 KO:K12604 InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054 RefSeq:XP_001347725.1
ProteinModelPortal:Q8IIW4 IntAct:Q8IIW4 MINT:MINT-1629072
EnsemblProtists:PF11_0049:mRNA GeneID:810602 KEGG:pfa:PF11_0049
EuPathDB:PlasmoDB:PF3D7_1103800 HOGENOM:HOG000282195 Uniprot:Q8IIW4
Length = 3371
Score = 445 (161.7 bits), Expect = 1.8e-67, Sum P(3) = 1.8e-67
Identities = 95/250 (38%), Positives = 152/250 (60%)
Query: 943 FGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYY 1002
FG IE L+ A E + I P+S + ++ I N + N++ K K + ++ Y+
Sbjct: 606 FGLG-QIECLMDATELTKNII-LPSSIIIGEVFSIFNTLCLFNIDEKIKILKDFMQPDYF 663
Query: 1003 PWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSEL--IKSS 1060
W A Y+V RAS E N H+++L+F+DK++ I+ TY+ C ++L + +K
Sbjct: 664 NWLAFYIVKSRASKEVNLHNVFLEFIDKLSYPLFIDTIISMTYD-CILILFKYINELKEV 722
Query: 1061 SEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQ 1120
S R++LKNLGSWLG +T+GRN+ L+++ +D K ++ EAY+KG ++ ++P KILE +
Sbjct: 723 SAFRTVLKNLGSWLGFITLGRNRPLKSKILDLKVVLFEAYDKGCLVCILPMVCKILESIK 782
Query: 1121 SSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDI-TPTSLLKDR 1179
S ++PPNPWT AIL LL EI+ +PN+K + F++EVLFKNL +++++ T LL R
Sbjct: 783 LSKNFKPPNPWTTAILCLLTEIHELPNVKTYIIFEVEVLFKNLSLNIQEFQNKTILLSKR 842
Query: 1180 KREIEGNPDF 1189
DF
Sbjct: 843 MPPQNKKSDF 852
Score = 276 (102.2 bits), Expect = 1.8e-67, Sum P(3) = 1.8e-67
Identities = 60/161 (37%), Positives = 97/161 (60%)
Query: 670 EAEANSYFHQMFSGQLTIEAMVQMLARFKESSV-KREHSIFECMIGNLFEEYRFFPKYPE 728
EAE N+YF ++++G +T+ M+ +L S + + +++CM+ LF E +FFPKYP
Sbjct: 20 EAEVNNYFAKLYTGDITVNTMLDILKGLSSSPKGSKNNDVYKCMLLVLFNECKFFPKYPP 79
Query: 729 RQLRIAAVLFGSIIKHQLVTHL--TLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRL 786
+L I A LFG +IK+ L+ +L IAL +L+A+RK D KMF FG ALEQF + L
Sbjct: 80 EELDITAKLFGKLIKNNLLMDYGNSLNIALMCILEAIRKENDIKMFNFGITALEQFEEYL 139
Query: 787 IEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLES 827
+ +P + + +L +++LR + + V L+ I H+ S
Sbjct: 140 LCYPSFLSSLLTMNNLRKYNPQYVTHYNDLLS-ILPEHIRS 179
Score = 130 (50.8 bits), Expect = 1.8e-67, Sum P(3) = 1.8e-67
Identities = 25/60 (41%), Positives = 42/60 (70%)
Query: 1289 IPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLK 1348
+ ++G VII+ + + +RVVP+A+DRAI+EI++ I++RSVSI TT+E++ K
Sbjct: 1061 LQSLGNAVIISPSIALFQIQPTLKRVVPVAVDRAIREIIASILERSVSICCVTTREIICK 1120
Score = 47 (21.6 bits), Expect = 1.5e-43, Sum P(3) = 1.5e-43
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 74 KYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERI 115
+Y++ P+F + + + N Q + + +D+L++ LPE I
Sbjct: 137 EYLLCYPSFLSSLLTMNNLRKYNPQYVTHYNDLLSI-LPEHI 177
Score = 45 (20.9 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 977 IINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFL 1028
++N + V K + + YY F ++ + E +F D+Y KF+
Sbjct: 2670 VMNIFCRIIVYESRKNKSNFNQRPYYRLFLSILI-EINKYEKSFEDIYNKFI 2720
Score = 40 (19.1 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
Identities = 14/66 (21%), Positives = 31/66 (46%)
Query: 971 QDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDK 1030
+ KI F + L V + ++ T +E F Q++ + + N ++ Y+KF
Sbjct: 2106 KSKI-FKDKGVGGLRVVPRPQQVTNEHEEIISFAFNQWVKLTSLNNIDNPNESYMKFFQS 2164
Query: 1031 VNSKAL 1036
++++ L
Sbjct: 2165 ISNQGL 2170
Score = 38 (18.4 bits), Expect = 1.3e-42, Sum P(3) = 1.3e-42
Identities = 12/59 (20%), Positives = 26/59 (44%)
Query: 790 PQYCNHILQISHLRSTHAELVAFIERALA-RISSGHLESDGASNPAAH--QHVSSQATS 845
PQY H + + H + +IE ++ +I + + NP + Q ++ + T+
Sbjct: 160 PQYVTHYNDLLSILPEHIRSMPYIEPSIIIKIKQLYSMNTNKVNPTINNMQLINDEHTN 218
Score = 38 (18.4 bits), Expect = 7.7e-17, Sum P(2) = 7.7e-17
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 1289 IPNIGTHVIINQKLTALGLHLHFQ 1312
+PN+ T++I ++ L L+ Q
Sbjct: 807 LPNVKTYIIFEVEVLFKNLSLNIQ 830
>UNIPROTKB|Q8IIW4 [details] [associations]
symbol:PF11_0049 "NOT family protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] EMBL:AE014186 KO:K12604 InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054 RefSeq:XP_001347725.1
ProteinModelPortal:Q8IIW4 IntAct:Q8IIW4 MINT:MINT-1629072
EnsemblProtists:PF11_0049:mRNA GeneID:810602 KEGG:pfa:PF11_0049
EuPathDB:PlasmoDB:PF3D7_1103800 HOGENOM:HOG000282195 Uniprot:Q8IIW4
Length = 3371
Score = 445 (161.7 bits), Expect = 1.8e-67, Sum P(3) = 1.8e-67
Identities = 95/250 (38%), Positives = 152/250 (60%)
Query: 943 FGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYY 1002
FG IE L+ A E + I P+S + ++ I N + N++ K K + ++ Y+
Sbjct: 606 FGLG-QIECLMDATELTKNII-LPSSIIIGEVFSIFNTLCLFNIDEKIKILKDFMQPDYF 663
Query: 1003 PWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSEL--IKSS 1060
W A Y+V RAS E N H+++L+F+DK++ I+ TY+ C ++L + +K
Sbjct: 664 NWLAFYIVKSRASKEVNLHNVFLEFIDKLSYPLFIDTIISMTYD-CILILFKYINELKEV 722
Query: 1061 SEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQ 1120
S R++LKNLGSWLG +T+GRN+ L+++ +D K ++ EAY+KG ++ ++P KILE +
Sbjct: 723 SAFRTVLKNLGSWLGFITLGRNRPLKSKILDLKVVLFEAYDKGCLVCILPMVCKILESIK 782
Query: 1121 SSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDI-TPTSLLKDR 1179
S ++PPNPWT AIL LL EI+ +PN+K + F++EVLFKNL +++++ T LL R
Sbjct: 783 LSKNFKPPNPWTTAILCLLTEIHELPNVKTYIIFEVEVLFKNLSLNIQEFQNKTILLSKR 842
Query: 1180 KREIEGNPDF 1189
DF
Sbjct: 843 MPPQNKKSDF 852
Score = 276 (102.2 bits), Expect = 1.8e-67, Sum P(3) = 1.8e-67
Identities = 60/161 (37%), Positives = 97/161 (60%)
Query: 670 EAEANSYFHQMFSGQLTIEAMVQMLARFKESSV-KREHSIFECMIGNLFEEYRFFPKYPE 728
EAE N+YF ++++G +T+ M+ +L S + + +++CM+ LF E +FFPKYP
Sbjct: 20 EAEVNNYFAKLYTGDITVNTMLDILKGLSSSPKGSKNNDVYKCMLLVLFNECKFFPKYPP 79
Query: 729 RQLRIAAVLFGSIIKHQLVTHL--TLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRL 786
+L I A LFG +IK+ L+ +L IAL +L+A+RK D KMF FG ALEQF + L
Sbjct: 80 EELDITAKLFGKLIKNNLLMDYGNSLNIALMCILEAIRKENDIKMFNFGITALEQFEEYL 139
Query: 787 IEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLES 827
+ +P + + +L +++LR + + V L+ I H+ S
Sbjct: 140 LCYPSFLSSLLTMNNLRKYNPQYVTHYNDLLS-ILPEHIRS 179
Score = 130 (50.8 bits), Expect = 1.8e-67, Sum P(3) = 1.8e-67
Identities = 25/60 (41%), Positives = 42/60 (70%)
Query: 1289 IPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLK 1348
+ ++G VII+ + + +RVVP+A+DRAI+EI++ I++RSVSI TT+E++ K
Sbjct: 1061 LQSLGNAVIISPSIALFQIQPTLKRVVPVAVDRAIREIIASILERSVSICCVTTREIICK 1120
Score = 47 (21.6 bits), Expect = 1.5e-43, Sum P(3) = 1.5e-43
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 74 KYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERI 115
+Y++ P+F + + + N Q + + +D+L++ LPE I
Sbjct: 137 EYLLCYPSFLSSLLTMNNLRKYNPQYVTHYNDLLSI-LPEHI 177
Score = 45 (20.9 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 977 IINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFL 1028
++N + V K + + YY F ++ + E +F D+Y KF+
Sbjct: 2670 VMNIFCRIIVYESRKNKSNFNQRPYYRLFLSILI-EINKYEKSFEDIYNKFI 2720
Score = 40 (19.1 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
Identities = 14/66 (21%), Positives = 31/66 (46%)
Query: 971 QDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDK 1030
+ KI F + L V + ++ T +E F Q++ + + N ++ Y+KF
Sbjct: 2106 KSKI-FKDKGVGGLRVVPRPQQVTNEHEEIISFAFNQWVKLTSLNNIDNPNESYMKFFQS 2164
Query: 1031 VNSKAL 1036
++++ L
Sbjct: 2165 ISNQGL 2170
Score = 38 (18.4 bits), Expect = 1.3e-42, Sum P(3) = 1.3e-42
Identities = 12/59 (20%), Positives = 26/59 (44%)
Query: 790 PQYCNHILQISHLRSTHAELVAFIERALA-RISSGHLESDGASNPAAH--QHVSSQATS 845
PQY H + + H + +IE ++ +I + + NP + Q ++ + T+
Sbjct: 160 PQYVTHYNDLLSILPEHIRSMPYIEPSIIIKIKQLYSMNTNKVNPTINNMQLINDEHTN 218
Score = 38 (18.4 bits), Expect = 7.7e-17, Sum P(2) = 7.7e-17
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 1289 IPNIGTHVIINQKLTALGLHLHFQ 1312
+PN+ T++I ++ L L+ Q
Sbjct: 807 LPNVKTYIIFEVEVLFKNLSLNIQ 830
>CGD|CAL0001252 [details] [associations]
symbol:CDC39 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0030015
"CCR4-NOT core complex" evidence=IEA] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=IEA] [GO:0007124 "pseudohyphal
growth" evidence=IEA] [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0051726 "regulation of cell cycle"
evidence=IEA] [GO:0000749 "response to pheromone involved in
conjugation with cellular fusion" evidence=IEA] [GO:0009267
"cellular response to starvation" evidence=IMP] [GO:0036170
"filamentous growth of a population of unicellular organisms in
response to starvation" evidence=IMP] [GO:0036180 "filamentous
growth of a population of unicellular organisms in response to
biotic stimulus" evidence=IMP] [GO:0071216 "cellular response to
biotic stimulus" evidence=IMP] CGD:CAL0001252 GO:GO:0071216
GO:GO:0036180 GO:GO:0009267 GO:GO:0036170 EMBL:AACQ01000168
KO:K12604 InterPro:IPR007196 InterPro:IPR024557 Pfam:PF12842
Pfam:PF04054 RefSeq:XP_712097.1 ProteinModelPortal:Q59R01
STRING:Q59R01 GeneID:3646278 KEGG:cal:CaO19.1084 Uniprot:Q59R01
Length = 2016
Score = 410 (149.4 bits), Expect = 1.1e-58, Sum P(3) = 1.1e-58
Identities = 77/219 (35%), Positives = 132/219 (60%)
Query: 964 EAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDL 1023
E P ++DK+ F +NN++ N+ + E E+L E Y+ WF+ Y+V RA EPN H+L
Sbjct: 652 EEPPESIRDKLLFSVNNMTGENL--RLSEIQEVLTESYFAWFSDYLVSDRAKAEPNNHEL 709
Query: 1024 YLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQ 1083
Y K + + + I+ + + ++ + K S ER+ LKNLG+WLG++T+ ++
Sbjct: 710 YSKLVKSLANPIFFEYILNVSLKEVDYIIRN--FKDSRSERNQLKNLGAWLGRITLANDK 767
Query: 1084 VLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIY 1143
LR I K L++EAY+ + ++PF KIL+ Q S ++PPNPW + ++ +LAE+Y
Sbjct: 768 PLRRDYIALKFLLVEAYDFNSLPLILPFVCKILDQAQYSKVFKPPNPWVVGVMKVLAELY 827
Query: 1144 SMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKRE 1182
+LK+ LKF+IEVL + + +KDI ++++++ E
Sbjct: 828 ECADLKLQLKFEIEVLLNSFNMKIKDIEQSTIIRNHNPE 866
Score = 386 (140.9 bits), Expect = 2.6e-57, Sum P(2) = 2.6e-57
Identities = 102/361 (28%), Positives = 171/361 (47%)
Query: 989 KAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENC 1048
+ E E+L E Y+ WF+ Y+V RA EPN H+LY K + + + I+ + +
Sbjct: 675 RLSEIQEVLTESYFAWFSDYLVSDRAKAEPNNHELYSKLVKSLANPIFFEYILNVSLKEV 734
Query: 1049 KVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAV 1108
++ + K S ER+ LKNLG+WLG++T+ ++ LR I K L++EAY+ + +
Sbjct: 735 DYIIRN--FKDSRSERNQLKNLGAWLGRITLANDKPLRRDYIALKFLLVEAYDFNSLPLI 792
Query: 1109 IPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMK 1168
+PF KIL+ Q S ++PPNPW + ++ +LAE+Y +LK+ LKF+IEVL + + +K
Sbjct: 793 LPFVCKILDQAQYSKVFKPPNPWVVGVMKVLAELYECADLKLQLKFEIEVLLNSFNMKIK 852
Query: 1169 DITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASP-PN 1227
DI ++++++ E P + G S Q V L L ++ +P P
Sbjct: 853 DIEQSTIIRNHNPE----PTALARMFGISS-QSVNLANEMTRLSLEGSQLGNNIQAPFPQ 907
Query: 1228 SGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLST 1287
+ + P L + ++ QLP Q L Q P Q +
Sbjct: 908 QIIESKQFPGISQPQM--QNVLQQQQQQQQQQQQQQLPPQQQL----PGQLP--PQQQAE 959
Query: 1288 PIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVL 1347
P + +I + H + +R ++ RA++E I + V TTK L+
Sbjct: 960 PALDTSFSTLIGNSIFTQ--HANLRRAFQASLSRAVRECTPHICNKVVETVVTTTKALIT 1017
Query: 1348 K 1348
K
Sbjct: 1018 K 1018
Score = 307 (113.1 bits), Expect = 1.1e-58, Sum P(3) = 1.1e-58
Identities = 89/315 (28%), Positives = 155/315 (49%)
Query: 519 DCTIRILEICQELKILSSVLEMI---PSPFAIRLAVIAS-----QKELVDLE-KWLSINL 569
D ++L + + +L++ S AI++ V +S K ++D + K +
Sbjct: 302 DAADKVLTLASSFGLTQEILDIFWAFDSKIAIKILVESSLFGYDYKSVIDSKLKDPQVKT 361
Query: 570 STYKDVFFEECLKFVKEVQFGRSQDFS-AQPFHHSGALLNLYMEKIPVILKLLKAHIGLI 628
S Y+ + E L + + R Q AQ AL + KIP + LL+ I
Sbjct: 362 SIYQALC--EALDERAQKDYERGQQVQQAQQLQQQQALPPHQVLKIPTVYYLLEK-IKSS 418
Query: 629 TSTKLSEEIEKFQAVVLDSTPRL---QNG--EA--ADSSTSEGYADDIEAEANSYFHQMF 681
++ + Q ++L + PRL NG EA A+ S + +E E +Y+ +M+
Sbjct: 419 NGVVDAKTLRNLQLLLLTTYPRLINFGNGHDEAILANEEKSPFFPPSVEMEMKAYYSKMY 478
Query: 682 SGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSI 741
+ +L I+ +V ML + K S +F CMI +L +EY+FF +YP L ++LFG++
Sbjct: 479 NKELEIKEIVDMLTQMKASDDLHSQDVFACMIHSLLDEYKFFSEYPLSALASTSLLFGAL 538
Query: 742 IKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISH 801
++ L+ TL +AL + ++ +P DS +F F ++L F RL E+P YC H+L+
Sbjct: 539 LEKDLIQGTTLTVALNFIWESCNQPQDSHLFKFAVQSLYNFKSRLHEYPIYCKHLLECRS 598
Query: 802 LRSTHAELVAFIERA 816
L S HA++ ++ A
Sbjct: 599 L-SAHAKMYQIVKDA 612
Score = 50 (22.7 bits), Expect = 6.7e-32, Sum P(3) = 6.7e-32
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 683 GQLTIEAM--VQMLARFKESSVKREHSIFE------CMIGNLFE-EYRFFPKY 726
G+L I+ + +Q + ++ +++H + E + LFE +YR FP+Y
Sbjct: 188 GKLEIQVITKIQQQQQQQQQQQQQQHQLSEQDKKLNAFLNQLFEHDYRVFPEY 240
Score = 47 (21.6 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 13/51 (25%), Positives = 29/51 (56%)
Query: 1128 PNPWTMAIL--GLLAE----IYSMPNLKMNLKFDIEVLFKNLGVDMKDITP 1172
P+PW + IL L+ + +P +K +++ +++ +F L +++K TP
Sbjct: 1967 PHPWGLTILFTELVKNGDYGFFELPFVKDSVE-EVKNIFNVLSINVKGSTP 2016
Score = 43 (20.2 bits), Expect = 1.1e-58, Sum P(3) = 1.1e-58
Identities = 14/63 (22%), Positives = 27/63 (42%)
Query: 1222 VASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFS 1281
+ PP S G T +Q APL+ + + ++ + + P+ Q QS+ +
Sbjct: 1169 IVPPPGSTGITQQQTQSLAPLQQQQQQQQQQQPVSTVVAAAPAPAPPQ--QQQQSKERIA 1226
Query: 1282 VSQ 1284
+Q
Sbjct: 1227 QAQ 1229
Score = 38 (18.4 bits), Expect = 1.1e-19, Sum P(3) = 1.1e-19
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 1121 SSLAYQPPNPWTMAILGLLAE 1141
S + + PNP +A+ GL A+
Sbjct: 1133 SDYSLRLPNPLGLALTGLSAQ 1153
>UNIPROTKB|Q59R01 [details] [associations]
symbol:CDC39 "Potential mRNA deadenylase and CCR4-NOT
complex subunit Cdc39p" species:237561 "Candida albicans SC5314"
[GO:0003674 "molecular_function" evidence=ND] [GO:0009267 "cellular
response to starvation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
CGD:CAL0001252 GO:GO:0071216 GO:GO:0036180 GO:GO:0009267
GO:GO:0036170 EMBL:AACQ01000168 KO:K12604 InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054 RefSeq:XP_712097.1
ProteinModelPortal:Q59R01 STRING:Q59R01 GeneID:3646278
KEGG:cal:CaO19.1084 Uniprot:Q59R01
Length = 2016
Score = 410 (149.4 bits), Expect = 1.1e-58, Sum P(3) = 1.1e-58
Identities = 77/219 (35%), Positives = 132/219 (60%)
Query: 964 EAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDL 1023
E P ++DK+ F +NN++ N+ + E E+L E Y+ WF+ Y+V RA EPN H+L
Sbjct: 652 EEPPESIRDKLLFSVNNMTGENL--RLSEIQEVLTESYFAWFSDYLVSDRAKAEPNNHEL 709
Query: 1024 YLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQ 1083
Y K + + + I+ + + ++ + K S ER+ LKNLG+WLG++T+ ++
Sbjct: 710 YSKLVKSLANPIFFEYILNVSLKEVDYIIRN--FKDSRSERNQLKNLGAWLGRITLANDK 767
Query: 1084 VLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIY 1143
LR I K L++EAY+ + ++PF KIL+ Q S ++PPNPW + ++ +LAE+Y
Sbjct: 768 PLRRDYIALKFLLVEAYDFNSLPLILPFVCKILDQAQYSKVFKPPNPWVVGVMKVLAELY 827
Query: 1144 SMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKRE 1182
+LK+ LKF+IEVL + + +KDI ++++++ E
Sbjct: 828 ECADLKLQLKFEIEVLLNSFNMKIKDIEQSTIIRNHNPE 866
Score = 386 (140.9 bits), Expect = 2.6e-57, Sum P(2) = 2.6e-57
Identities = 102/361 (28%), Positives = 171/361 (47%)
Query: 989 KAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENC 1048
+ E E+L E Y+ WF+ Y+V RA EPN H+LY K + + + I+ + +
Sbjct: 675 RLSEIQEVLTESYFAWFSDYLVSDRAKAEPNNHELYSKLVKSLANPIFFEYILNVSLKEV 734
Query: 1049 KVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAV 1108
++ + K S ER+ LKNLG+WLG++T+ ++ LR I K L++EAY+ + +
Sbjct: 735 DYIIRN--FKDSRSERNQLKNLGAWLGRITLANDKPLRRDYIALKFLLVEAYDFNSLPLI 792
Query: 1109 IPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMK 1168
+PF KIL+ Q S ++PPNPW + ++ +LAE+Y +LK+ LKF+IEVL + + +K
Sbjct: 793 LPFVCKILDQAQYSKVFKPPNPWVVGVMKVLAELYECADLKLQLKFEIEVLLNSFNMKIK 852
Query: 1169 DITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASP-PN 1227
DI ++++++ E P + G S Q V L L ++ +P P
Sbjct: 853 DIEQSTIIRNHNPE----PTALARMFGISS-QSVNLANEMTRLSLEGSQLGNNIQAPFPQ 907
Query: 1228 SGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLST 1287
+ + P L + ++ QLP Q L Q P Q +
Sbjct: 908 QIIESKQFPGISQPQM--QNVLQQQQQQQQQQQQQQLPPQQQL----PGQLP--PQQQAE 959
Query: 1288 PIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVL 1347
P + +I + H + +R ++ RA++E I + V TTK L+
Sbjct: 960 PALDTSFSTLIGNSIFTQ--HANLRRAFQASLSRAVRECTPHICNKVVETVVTTTKALIT 1017
Query: 1348 K 1348
K
Sbjct: 1018 K 1018
Score = 307 (113.1 bits), Expect = 1.1e-58, Sum P(3) = 1.1e-58
Identities = 89/315 (28%), Positives = 155/315 (49%)
Query: 519 DCTIRILEICQELKILSSVLEMI---PSPFAIRLAVIAS-----QKELVDLE-KWLSINL 569
D ++L + + +L++ S AI++ V +S K ++D + K +
Sbjct: 302 DAADKVLTLASSFGLTQEILDIFWAFDSKIAIKILVESSLFGYDYKSVIDSKLKDPQVKT 361
Query: 570 STYKDVFFEECLKFVKEVQFGRSQDFS-AQPFHHSGALLNLYMEKIPVILKLLKAHIGLI 628
S Y+ + E L + + R Q AQ AL + KIP + LL+ I
Sbjct: 362 SIYQALC--EALDERAQKDYERGQQVQQAQQLQQQQALPPHQVLKIPTVYYLLEK-IKSS 418
Query: 629 TSTKLSEEIEKFQAVVLDSTPRL---QNG--EA--ADSSTSEGYADDIEAEANSYFHQMF 681
++ + Q ++L + PRL NG EA A+ S + +E E +Y+ +M+
Sbjct: 419 NGVVDAKTLRNLQLLLLTTYPRLINFGNGHDEAILANEEKSPFFPPSVEMEMKAYYSKMY 478
Query: 682 SGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSI 741
+ +L I+ +V ML + K S +F CMI +L +EY+FF +YP L ++LFG++
Sbjct: 479 NKELEIKEIVDMLTQMKASDDLHSQDVFACMIHSLLDEYKFFSEYPLSALASTSLLFGAL 538
Query: 742 IKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISH 801
++ L+ TL +AL + ++ +P DS +F F ++L F RL E+P YC H+L+
Sbjct: 539 LEKDLIQGTTLTVALNFIWESCNQPQDSHLFKFAVQSLYNFKSRLHEYPIYCKHLLECRS 598
Query: 802 LRSTHAELVAFIERA 816
L S HA++ ++ A
Sbjct: 599 L-SAHAKMYQIVKDA 612
Score = 50 (22.7 bits), Expect = 6.7e-32, Sum P(3) = 6.7e-32
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 683 GQLTIEAM--VQMLARFKESSVKREHSIFE------CMIGNLFE-EYRFFPKY 726
G+L I+ + +Q + ++ +++H + E + LFE +YR FP+Y
Sbjct: 188 GKLEIQVITKIQQQQQQQQQQQQQQHQLSEQDKKLNAFLNQLFEHDYRVFPEY 240
Score = 47 (21.6 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 13/51 (25%), Positives = 29/51 (56%)
Query: 1128 PNPWTMAIL--GLLAE----IYSMPNLKMNLKFDIEVLFKNLGVDMKDITP 1172
P+PW + IL L+ + +P +K +++ +++ +F L +++K TP
Sbjct: 1967 PHPWGLTILFTELVKNGDYGFFELPFVKDSVE-EVKNIFNVLSINVKGSTP 2016
Score = 43 (20.2 bits), Expect = 1.1e-58, Sum P(3) = 1.1e-58
Identities = 14/63 (22%), Positives = 27/63 (42%)
Query: 1222 VASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFS 1281
+ PP S G T +Q APL+ + + ++ + + P+ Q QS+ +
Sbjct: 1169 IVPPPGSTGITQQQTQSLAPLQQQQQQQQQQQPVSTVVAAAPAPAPPQ--QQQQSKERIA 1226
Query: 1282 VSQ 1284
+Q
Sbjct: 1227 QAQ 1229
Score = 38 (18.4 bits), Expect = 1.1e-19, Sum P(3) = 1.1e-19
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 1121 SSLAYQPPNPWTMAILGLLAE 1141
S + + PNP +A+ GL A+
Sbjct: 1133 SDYSLRLPNPLGLALTGLSAQ 1153
>SGD|S000000689 [details] [associations]
symbol:CDC39 "Component of the CCR4-NOT transcriptional
complex" species:4932 "Saccharomyces cerevisiae" [GO:0000749
"response to pheromone involved in conjugation with cellular
fusion" evidence=IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IGI;IMP;IDA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IDA] [GO:0030015 "CCR4-NOT core
complex" evidence=IPI] [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IDA;IPI] [GO:0007124 "pseudohyphal growth" evidence=IMP]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IGI;IMP] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IPI]
[GO:0003674 "molecular_function" evidence=ND] [GO:0051726
"regulation of cell cycle" evidence=IMP] SGD:S000000689
GO:GO:0005634 GO:GO:0005737 EMBL:X59720 EMBL:BK006937 GO:GO:0000122
GO:GO:0051726 GO:GO:0006368 GO:GO:0007124 GO:GO:0032968
GO:GO:0000289 GO:GO:0030015 PDB:4B8C PDBsum:4B8C eggNOG:COG5103
KO:K12604 InterPro:IPR007196 InterPro:IPR024557 Pfam:PF12842
Pfam:PF04054 GeneTree:ENSGT00390000014869 GO:GO:0000749 EMBL:X70151
PIR:S28417 RefSeq:NP_010017.2 PDB:4B89 PDB:4B8A PDB:4B8B
PDBsum:4B89 PDBsum:4B8A PDBsum:4B8B ProteinModelPortal:P25655
DIP:DIP-1202N IntAct:P25655 MINT:MINT-383459 STRING:P25655
PaxDb:P25655 PeptideAtlas:P25655 EnsemblFungi:YCR093W GeneID:850455
KEGG:sce:YCR093W HOGENOM:HOG000057131 OMA:VIQEQIN OrthoDB:EOG43XZBJ
NextBio:966081 Genevestigator:P25655 GermOnline:YCR093W
Uniprot:P25655
Length = 2108
Score = 400 (145.9 bits), Expect = 5.5e-57, Sum P(5) = 5.5e-57
Identities = 86/267 (32%), Positives = 149/267 (55%)
Query: 910 SSAQKLHNAVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASE 969
S AQ + V A + + +RP + + KF + + + +E AP +
Sbjct: 733 SQAQVYQSIVEAATLANAPKERSRPVQEMIPLKFFAVDEVSCQI----NQEG---AP-KD 784
Query: 970 VQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLD 1029
V +K+ F++NN++ N+ K E + L Y+ WF+ Y+V +RA EPN+HDLY K +
Sbjct: 785 VVEKVLFVLNNVTLANLNNKVDELKKSLTPNYFSWFSTYLVTQRAKTEPNYHDLYSKVIV 844
Query: 1030 KVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRARE 1089
+ S L++ +V T VLL ++ + ++ LKNL SWLG +T+ N+ ++ +
Sbjct: 845 AMGSGLLHQFMVNVTLRQLFVLLSTK--DEQAIDKKHLKNLASWLGCITLALNKPIKHKN 902
Query: 1090 IDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLK 1149
I + ++IEAY++ + V+PF +KIL+ S ++PPNPWT+ IL LL E+ N K
Sbjct: 903 IAFREMLIEAYKENRLEIVVPFVTKILQRASESKIFKPPNPWTVGILKLLIELNEKANWK 962
Query: 1150 MNLKFDIEVLFKNLGVDMKDITPTSLL 1176
++L F++EVL K+ + K + P++ +
Sbjct: 963 LSLTFEVEVLLKSFNLTTKSLKPSNFI 989
Score = 264 (98.0 bits), Expect = 5.5e-57, Sum P(5) = 5.5e-57
Identities = 62/191 (32%), Positives = 107/191 (56%)
Query: 636 EIEKFQAV---VLDSTPRLQN-GEAADSSTSE-----GYADDIEAEANSYFHQMFSGQLT 686
++++F+++ +L + PRL N G D + G +DIE E +Y +M+SG+L
Sbjct: 555 QLQRFESLEFSLLIAFPRLINFGFGHDEAILANGDIAGINNDIEKEMQNYLQKMYSGELA 614
Query: 687 IEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQL 746
I+ ++++L R ++S + R+ +F C+ + E FF YP L +VLFGS+I QL
Sbjct: 615 IKDVIELLRRLRDSDLPRDQEVFTCITHAVIAESTFFQDYPLDALATTSVLFGSMILFQL 674
Query: 747 VTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQ-ISHLRST 805
+ L +A R ++ ++P +SKMF F +A+ F RL E+PQYC +L+ + L+S
Sbjct: 675 LRGFVLDVAFRIIMRFAKEPPESKMFKFAVQAIYAFRIRLAEYPQYCKDLLRDVPALKSQ 734
Query: 806 HAELVAFIERA 816
+ +E A
Sbjct: 735 AQVYQSIVEAA 745
Score = 74 (31.1 bits), Expect = 5.5e-57, Sum P(5) = 5.5e-57
Identities = 14/41 (34%), Positives = 28/41 (68%)
Query: 1308 HLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLK 1348
H +RV +A+ ++++EI+ +V++S IA TT +++LK
Sbjct: 1085 HPDLKRVFQMALAKSVREILLEVVEKSSGIAVVTTTKIILK 1125
Score = 60 (26.2 bits), Expect = 5.5e-57, Sum P(5) = 5.5e-57
Identities = 23/98 (23%), Positives = 45/98 (45%)
Query: 560 DLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQ--DFSAQPFHHSGALLNLYMEKIPVI 617
+ +K I LS + D+F + K + E SQ DF +H+ L N +++ P
Sbjct: 121 EFQKQTGITLSLFIDLFDKSANKDIIESLDRSSQINDFKTIKMNHTNYLRNFFLQTTP-- 178
Query: 618 LKLLKAHIGLITSTKLSEEIEKFQAVVLDS--TPRLQN 653
+ L++++ + + E + A++L +P QN
Sbjct: 179 -ETLESNLRDLLHSLEGESLNDLLALLLSEILSPGSQN 215
Score = 55 (24.4 bits), Expect = 1.8e-56, Sum P(5) = 1.8e-56
Identities = 32/133 (24%), Positives = 58/133 (43%)
Query: 167 SSDLSKHVDSLMQILSLLQSK-DHTQFVLNPVL---PDELHDATSLRDLDLFHECRDDDF 222
+ D+ + +D QI K +HT ++ N L P+ L ++LRDL H +
Sbjct: 142 NKDIIESLDRSSQINDFKTIKMNHTNYLRNFFLQTTPETLE--SNLRDL--LHSLEGESL 197
Query: 223 DDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGL 282
+D+LA + + ++++ D ++ S TP + + IAR+ + L
Sbjct: 198 NDLLA-----LLLSEILSPGSQNLQNDPTR-----SWLTPPMVLDATNRGNVIARSISSL 247
Query: 283 EDNQ-NTFSTFTL 294
+ NQ N F L
Sbjct: 248 QANQINWNRVFNL 260
Score = 54 (24.1 bits), Expect = 3.3e-18, Sum P(4) = 3.3e-18
Identities = 30/101 (29%), Positives = 48/101 (47%)
Query: 1022 DLYLKFLDKVNSKALNREIVQATYENC-KVLLG-SELIKSSSEER--SLLKNLGSWLGKL 1077
DL+ KFLD+ SK + V Y+ +V+LG S + S E L+ NL +L
Sbjct: 1784 DLF-KFLDQYTSKHAVSDAVSVVYKGTLRVILGISNDMPSFLIENHYELMNNLPPTYFQL 1842
Query: 1078 TIGRNQVLRAREIDPKSLII-EAYEKGLMIAVIPFTSKILE 1117
+N +L A PK++ + Y+ L + IP ++ E
Sbjct: 1843 ---KNVILSAI---PKNMTVPNPYDVDLNMEDIPACKELPE 1877
Score = 49 (22.3 bits), Expect = 1.6e-20, Sum P(5) = 1.6e-20
Identities = 23/89 (25%), Positives = 49/89 (55%)
Query: 1025 LKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERS-------LLKNLGSWLGKL 1077
LK L ++N KA N ++ T+E +VLL S + + S + S +++ L LG +
Sbjct: 949 LKLLIELNEKA-NWKL-SLTFE-VEVLLKSFNLTTKSLKPSNFINTPEVIETLSGALGSI 1005
Query: 1078 TIGRNQVLRAREIDPKSLIIEAYEKGLMI 1106
T+ + Q + R+I ++++ +++ ++I
Sbjct: 1006 TLEQQQTEQQRQI----ILMQQHQQQMLI 1030
Score = 46 (21.3 bits), Expect = 5.5e-57, Sum P(5) = 5.5e-57
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 8 VPSQIRFLLQSLNEANADSVFRELCQFIE 36
V +QI L +LN N +SV RE+ ++
Sbjct: 27 VIAQISLLFTTLNNDNFESVEREIRHILD 55
Score = 46 (21.3 bits), Expect = 4.2e-54, Sum P(5) = 4.2e-54
Identities = 16/68 (23%), Positives = 34/68 (50%)
Query: 1265 PSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIK 1324
P +G+ QS +P +S S+P + T IN+ + G+ L + +MD++ +
Sbjct: 1159 PLKEGIRSTMQSLAPNLMSLSSSPAEELDT--AINENI---GIALVL--IEKASMDKSTQ 1211
Query: 1325 EIVSGIVQ 1332
++ ++Q
Sbjct: 1212 DLADQLMQ 1219
Score = 41 (19.5 bits), Expect = 6.0e-17, Sum P(5) = 6.0e-17
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 1083 QVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILE 1117
Q+ A+ + + +++E EK IAV+ T IL+
Sbjct: 1093 QMALAKSV--REILLEVVEKSSGIAVVTTTKIILK 1125
Score = 41 (19.5 bits), Expect = 6.8e-17, Sum P(4) = 6.8e-17
Identities = 20/93 (21%), Positives = 40/93 (43%)
Query: 954 AAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYP-----WFAQY 1008
A E + T A + + + N I ++E K + I+++ YP WF+ +
Sbjct: 1946 AGIEYKRTSSNAVFNTKSSYYTLLFNLIQNGSIEMKYQIILSIVEQLRYPNIHTYWFS-F 2004
Query: 1009 MVMKRASIEPNFHDLYLKFLDKVNSKALNREIV 1041
++M + ++D L+ + + L R IV
Sbjct: 2005 VLMNMFKSD-EWNDQKLEVQEIILRNFLKRIIV 2036
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.133 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1353 1321 0.00085 124 3 11 22 0.38 34
39 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 17
No. of states in DFA: 631 (67 KB)
Total size of DFA: 527 KB (2243 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 117.14u 0.17s 117.31t Elapsed: 00:00:07
Total cpu time: 117.15u 0.17s 117.32t Elapsed: 00:00:08
Start: Mon May 20 22:31:04 2013 End: Mon May 20 22:31:12 2013