BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000683
(1353 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6ZQ08|CNOT1_MOUSE CCR4-NOT transcription complex subunit 1 OS=Mus musculus GN=Cnot1
PE=1 SV=2
Length = 2375
Score = 249 bits (637), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 142/403 (35%), Positives = 219/403 (54%), Gaps = 52/403 (12%)
Query: 948 NIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQ 1007
NI+TL+ A ++ E +E P + +Q+KI+FI NN+S N+ K +E E +KE++ PW +Q
Sbjct: 1073 NIDTLLVATDQTERIVEPPEN-IQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQ 1131
Query: 1008 YMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLL 1067
Y+VMKR SIEPNFH LY FLD + + N+ ++ TY N KVLL S+ ++ +RSLL
Sbjct: 1132 YLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLL 1191
Query: 1068 KNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAY 1125
KNLG WLG +T+ +N+ + ++D KSL++EAY KG ++ V+PF +K+LE SL +
Sbjct: 1192 KNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSLVF 1251
Query: 1126 QPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEG 1185
+PPNPWTMAI+ +LAE++ +LK+NLKF+IEVL KNL +D+ ++ P +LLKD+ R
Sbjct: 1252 RPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNL 1311
Query: 1186 NPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLS 1245
+ S QP+ +P + S PP H ++ Y+
Sbjct: 1312 DEQLSAPKKDVKQPEELPAITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYS------ 1365
Query: 1246 SGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTAL 1305
LA L H+ +N +
Sbjct: 1366 ---------LAGL----------------------------------APHITLNPTIPLF 1382
Query: 1306 GLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLK 1348
H ++ V A++RA++E+V +V RS+ IA T +++V K
Sbjct: 1383 QAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRK 1425
Score = 199 bits (507), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 168/631 (26%), Positives = 293/631 (46%), Gaps = 73/631 (11%)
Query: 10 SQIRFLLQSLNEANADSVFRELCQFI-EYGIEGSTMMLQTCMDHLNLHGTGL---KNPQL 65
SQI +L+ +L + N + +E+ + +G E +L+ H++ G G K+
Sbjct: 11 SQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGDGKSSGKDFHQ 70
Query: 66 ESVVASVFKYIMDKPNFSTVFSQSV-------KITEINEQLLENLSDVLNLSLPERIGIG 118
+ ++ KPNF + S ++ K + L LS VL LS + + G
Sbjct: 71 TQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLKLSKVQEVIFG 130
Query: 119 LALSDSENLDALMCGKNFCMAQIERLCAN----PVPMNSAEQIQNIIM-----------F 163
LAL +S + D F ++ L + V N Q+I + F
Sbjct: 131 LALLNSSSPDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEVLHLLLSHLLF 190
Query: 164 LQRSS--DLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDD 221
Q+ + + +D+ ++ L ++ VL P+L + E RD
Sbjct: 191 GQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLL---------------YPEKRDIL 235
Query: 222 FDDIL------AEMEKEMSMGDVMNELGYGCSADASQCKEILSLF--TPLTEITLSRILG 273
D IL A+ E S+ D M E+GYG A +C+ I+ F +T ++R+LG
Sbjct: 236 MDRILPDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLG 295
Query: 274 AIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLS------SWNVDVLVKAIKQLAPNTN 327
+ARTH+GL D S A G SD S +WNV+VL+ +K+L P+ N
Sbjct: 296 MMARTHSGLTDGIPLQSIS--APGSGIWSDGKDKSEGAQAHTWNVEVLIDVLKELNPSLN 353
Query: 328 WIRVVENLDYEGFYIPTEEAF-SFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYA 386
+ V LD+ GF I + + + + E FP+ + WK+ EGQLSF++++
Sbjct: 354 FKEVTYELDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDFIYRP-WKHAEGQLSFIQHS 412
Query: 387 VASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARS 446
+ +P EVF FA D + + W LDL++ L +L+E+G +
Sbjct: 413 LINP-EVFCFADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQ 471
Query: 447 MLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHI-WH---VN 502
+ +P+K CP+ML+L + INT+++ +++E+ + P+ + + ++ +ILH WH +
Sbjct: 472 LFSFPIKHCPDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQS 531
Query: 503 PNI-------VLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQ 555
P+I + ++ + + RIL++ Q+LK LS +L P F I LA +AS+
Sbjct: 532 PSIRQLIMHAMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASR 591
Query: 556 KELVDLEKWLSINLSTYKDVFFEECLKFVKE 586
+E + L+KWL+ + + + F + C+ F+K
Sbjct: 592 REYLKLDKWLTDKIREHGEPFIQACMTFLKR 622
Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 114/157 (72%), Gaps = 4/157 (2%)
Query: 662 SEGYADDIEAEANSYFHQMFSG----QLTIEAMVQMLARFKESSVKREHSIFECMIGNLF 717
++ ++ +I+ EANSYF ++++ ++++ +++ML RFK+S++KRE +F CM+ NLF
Sbjct: 836 NQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLF 895
Query: 718 EEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTK 777
EEYRFFP+YP+++L I A LFG II+ LVT++ LG+ALR VL+ALRKP SKM+ FG
Sbjct: 896 EEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIA 955
Query: 778 ALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIE 814
AL++F +RL ++PQYC H+ ISH L +IE
Sbjct: 956 ALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEYIE 992
>sp|A5YKK6|CNOT1_HUMAN CCR4-NOT transcription complex subunit 1 OS=Homo sapiens GN=CNOT1
PE=1 SV=2
Length = 2376
Score = 248 bits (634), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 141/403 (34%), Positives = 220/403 (54%), Gaps = 52/403 (12%)
Query: 948 NIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQ 1007
NI+TL+ A ++ E +E P + +Q+KI+FI NN+S N+ K +E E +KE++ PW +Q
Sbjct: 1074 NIDTLLVATDQTERIVEPPEN-IQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQ 1132
Query: 1008 YMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLL 1067
Y+VMKR SIEPNFH LY FLD + + N+ ++ TY N KVLL S+ ++ +RSLL
Sbjct: 1133 YLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLL 1192
Query: 1068 KNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAY 1125
KNLG WLG +T+ +N+ + ++D KSL++EAY KG ++ V+PF +K+LE S+ +
Sbjct: 1193 KNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVF 1252
Query: 1126 QPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEG 1185
+PPNPWTMAI+ +LAE++ +LK+NLKF+IEVL KNL +D+ ++ P +LLKD+ R
Sbjct: 1253 RPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNL 1312
Query: 1186 NPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLS 1245
+ S QP+ +P + S + PP H ++ Y+
Sbjct: 1313 DEQLSAPKKDVKQPEELPPITTTTTSTTPATNTTCTATVPPQPQYSYHDINVYS------ 1366
Query: 1246 SGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTAL 1305
LA L H+ +N +
Sbjct: 1367 ---------LAGL----------------------------------APHITLNPTIPLF 1383
Query: 1306 GLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLK 1348
H ++ V A++RA++E+V +V RS+ IA T +++V K
Sbjct: 1384 QAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRK 1426
Score = 201 bits (510), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 165/629 (26%), Positives = 291/629 (46%), Gaps = 69/629 (10%)
Query: 10 SQIRFLLQSLNEANADSVFRELCQFI-EYGIEGSTMMLQTCMDHLNLHGTGL---KNPQL 65
SQI +L+ +L + N + +E+ + +G E +L+ H++ G G K+
Sbjct: 11 SQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGDGKSSGKDFHQ 70
Query: 66 ESVVASVFKYIMDKPNFSTVFSQSV-------KITEINEQLLENLSDVLNLSLPERIGIG 118
+ ++ KPNF + S ++ K + L LS VL LS + + G
Sbjct: 71 TQFLIQECALLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLKLSKVQEVIFG 130
Query: 119 LALSDSENLDALMCGKNFCMAQIERLCAN----PVPMNSAEQIQNIIM-----------F 163
LAL +S + D F ++ L + V N Q+I + F
Sbjct: 131 LALLNSSSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEVLHLLLSHLLF 190
Query: 164 LQRSS--DLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDD 221
Q+ + + +D+ ++ L ++ VL P+L + E RD
Sbjct: 191 GQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLL---------------YPEKRDIL 235
Query: 222 FDDIL------AEMEKEMSMGDVMNELGYGCSADASQCKEILSLF--TPLTEITLSRILG 273
D IL A+ E S+ D M E+GYG A +C+ I+ F +T ++R+LG
Sbjct: 236 MDRILPDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIVQFGVREVTAAQVARVLG 295
Query: 274 AIARTHAGLEDNQNTFSTFTLALGC----STMSDLPPLSSWNVDVLVKAIKQLAPNTNWI 329
+ARTH+GL D S G SD +WNV+VL+ +K+L P+ N+
Sbjct: 296 MMARTHSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLNFK 355
Query: 330 RVVENLDYEGFYIPTEEAF-SFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVA 388
V LD+ GF I + + + + E FP+ + WK+ EGQLSF+++++
Sbjct: 356 EVTYELDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDLIYRP-WKHAEGQLSFIQHSLI 414
Query: 389 SPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARSML 448
+P E+F FA D + + W LDL++ L +L+E+G + +
Sbjct: 415 NP-EIFCFADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLF 473
Query: 449 EYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHI-WH---VNPN 504
+P+K CP+ML+L + INT+++ +++E+ + P+ + + ++ +ILH WH +P+
Sbjct: 474 SFPIKHCPDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPS 533
Query: 505 I-------VLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKE 557
I + ++ + + RIL++ Q+LK LS +L P F I LA +AS++E
Sbjct: 534 IRQLIMHAMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRRE 593
Query: 558 LVDLEKWLSINLSTYKDVFFEECLKFVKE 586
+ L+KWL+ + + + F + C+ F+K
Sbjct: 594 YLKLDKWLTDKIREHGEPFIQACMTFLKR 622
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 114/157 (72%), Gaps = 4/157 (2%)
Query: 662 SEGYADDIEAEANSYFHQMFSG----QLTIEAMVQMLARFKESSVKREHSIFECMIGNLF 717
++ ++ +I+ EANSYF ++++ ++++ +++ML RFK+S++KRE +F CM+ NLF
Sbjct: 837 NQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLF 896
Query: 718 EEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTK 777
EEYRFFP+YP+++L I A LFG II+ LVT++ LG+ALR VL+ALRKP SKM+ FG
Sbjct: 897 EEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIA 956
Query: 778 ALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIE 814
AL++F +RL ++PQYC H+ ISH L +IE
Sbjct: 957 ALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEYIE 993
>sp|A0JP85|CNOT1_XENTR CCR4-NOT transcription complex subunit 1 OS=Xenopus tropicalis
GN=cnot1 PE=2 SV=1
Length = 2388
Score = 239 bits (611), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 143/403 (35%), Positives = 221/403 (54%), Gaps = 27/403 (6%)
Query: 948 NIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQ 1007
NI+TL+ A + +E P + VQ+KI+FI NN+S N+ K +E E +K+ Y PW +Q
Sbjct: 1060 NIDTLLVATDLAGQIVEPPEN-VQEKIAFIFNNLSQSNMTQKVEELKETVKDDYMPWVSQ 1118
Query: 1008 YMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLL 1067
Y+VMKR SIE NFH LY FLD + N+ ++ TY N KVLL S+ ++ +RSLL
Sbjct: 1119 YLVMKRVSIELNFHSLYSNFLDALKHLEFNKMVLAETYRNIKVLLTSDKAAANFSDRSLL 1178
Query: 1068 KNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAY 1125
KNLG WLG +T+ +N+ + ++D KSL++EAY KG ++ V+PF +K+LE S+ +
Sbjct: 1179 KNLGHWLGMITLAKNKPILHTDLDLKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVF 1238
Query: 1126 QPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEG 1185
+PPNPWTMAI+ +LAE++ +LK+NLKF+IEVL KNL +D+ D+ P +LLKD+ R
Sbjct: 1239 RPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLVLDINDLKPGTLLKDKDRLKSL 1298
Query: 1186 NPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLS 1245
+ S QP+ +P P+ AS + A L S
Sbjct: 1299 DEQLSAPKKDVKQPEELP---------------PMTSAS--------EYAIRTAGKLWAS 1335
Query: 1246 SGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTAL 1305
D A + + Q Q + + + + + H+ +N +
Sbjct: 1336 VEKQESDAVFTATATAPPPSTTCTTTVPPQPQYSYHDIHVYS-LAGLAPHITLNPTIPLF 1394
Query: 1306 GLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLK 1348
H ++ V A++RA++E+V +V RS+ IA T +++V K
Sbjct: 1395 QAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRK 1437
Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 165/629 (26%), Positives = 294/629 (46%), Gaps = 69/629 (10%)
Query: 10 SQIRFLLQSLNEANADSVFRELCQFI-EYGIEGSTMMLQTCMDHLNLHGTGL---KNPQL 65
SQI +L+ +L + N + E+ + +G E +L+ H++ G G K+
Sbjct: 11 SQISYLVDNLTKKNYRASQLEIQHIVNRHGPEADRHLLRCLFSHVDFSGDGKSSGKDFHQ 70
Query: 66 ESVVASVFKYIMDKPNFSTVFSQSV-------KITEINEQLLENLSDVLNLSLPERIGIG 118
+ ++ KPNF + S ++ K + + L LS VL LS + + G
Sbjct: 71 TQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVLKLSKVQEVIFG 130
Query: 119 LALSDSENLDALMCGKNFCMAQIERLCANPVPMN-SAEQ---IQNIIM-----------F 163
LAL +S + + F ++ L + V ++ S Q Q+I + F
Sbjct: 131 LALLNSSSCELRGFAAQFVKQKLPDLLRSYVDVDVSGSQEGGFQDIAIEVLHLLLSNLLF 190
Query: 164 LQRSS--DLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDD 221
Q+ + + + + ++ L ++ VL P+L + E RD
Sbjct: 191 GQKGAFGVGQEQIVAFLKTLRRDFPQERCPVVLAPLL---------------YPEKRDIL 235
Query: 222 FDDILAE---MEKEM---SMGDVMNELGYGCSADASQCKEILSLF--TPLTEITLSRILG 273
D ILA+ + K M S+ D M E+GY A +C+ ++ F +T + ++R+LG
Sbjct: 236 MDRILADSGGITKTMMDSSLADFMQEVGYSFCASVEECRNVIVQFGVREVTAVQVARVLG 295
Query: 274 AIARTHAGLEDNQNTFSTFTLALGCST----MSDLPPLSSWNVDVLVKAIKQLAPNTNWI 329
+ARTH+GL D S + G + +D +WNV+VL+ +K+L P N+
Sbjct: 296 MMARTHSGLTDGIPLQSITSPGSGIWSDGKDKNDAVQPHTWNVEVLIDVVKELNPTLNFK 355
Query: 330 RVVENLDYEGFYIPTEEAF-SFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVA 388
V LD F I + + + + E FP+ V WKN EGQLSF+++++
Sbjct: 356 EVTYELDNPSFQIRDSKGLQTVVYGIQRGLGIEAFPVDLVYRP-WKNAEGQLSFIQHSLV 414
Query: 389 SPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARSML 448
+P +VF FA A D + + W LDL++ L +L+E+G + +
Sbjct: 415 NP-DVFCFADYACHAVATDILKAPPEDDNREIATWKSLDLIESLLRLAELGQYEQVKQLF 473
Query: 449 EYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHI-WH---VNPN 504
YP+K CP+ML+L + INT ++ +++E+ + P+ + + ++ +ILH WH +P+
Sbjct: 474 AYPIKHCPDMLVLALLQINTTWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPS 533
Query: 505 I-------VLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKE 557
I + ++ + + RIL++ Q+LK LS +L P F I LA +AS++E
Sbjct: 534 IRQLIMHAMAEWYMRGEQYDQARLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRRE 593
Query: 558 LVDLEKWLSINLSTYKDVFFEECLKFVKE 586
+ L+KWL+ + + + F + C+ F+K
Sbjct: 594 YLKLDKWLTDKIREHGEPFIQACMTFLKR 622
Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 114/157 (72%), Gaps = 4/157 (2%)
Query: 662 SEGYADDIEAEANSYFHQMFSG----QLTIEAMVQMLARFKESSVKREHSIFECMIGNLF 717
++ ++ +I+ EANSYF ++++ ++++ +++ML RFK+S++KRE +F CM+ NLF
Sbjct: 831 NQHFSKEIDDEANSYFQRIYNQPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLF 890
Query: 718 EEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTK 777
EEYRFFP+YP+++L I A LFG II+ LVT++ LG+ALR VL+ALRKP SKM+ FG
Sbjct: 891 EEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYQSKMYFFGIA 950
Query: 778 ALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIE 814
AL++F +RL ++PQYC H+ ISH L +IE
Sbjct: 951 ALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEYIE 987
>sp|A1A5H6|CNOT1_DANRE CCR4-NOT transcription complex subunit 1 OS=Danio rerio GN=cnot1 PE=2
SV=1
Length = 2374
Score = 225 bits (574), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 165/236 (69%), Gaps = 3/236 (1%)
Query: 948 NIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQ 1007
NI+TL+ A ++ E +E P + VQ+KI+FI NN+S N+ K +E E +KE++ PW +Q
Sbjct: 1066 NIDTLLVATDQTERIVEPPEN-VQEKIAFIFNNLSQSNMSQKVEELKETVKEEFMPWVSQ 1124
Query: 1008 YMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLL 1067
Y+VMKR SIEPNFH LY FLD + + + ++ TY N KVLL S+ ++ +RSLL
Sbjct: 1125 YLVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLL 1184
Query: 1068 KNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAY 1125
KNLG WLG +T+ +N+ + +++ KSL++EAY KG ++ V+PF +K+LE S+ +
Sbjct: 1185 KNLGHWLGMITLAKNKPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVIF 1244
Query: 1126 QPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKR 1181
+P NPWTM I+ +LAE++ +LK+NLKF+IEVL KNL +D+ D+ P +LL+D+ +
Sbjct: 1245 RPQNPWTMGIMNVLAELHQEHDLKLNLKFEIEVLCKNLSMDITDLKPGNLLRDKDK 1300
Score = 214 bits (544), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 173/626 (27%), Positives = 302/626 (48%), Gaps = 63/626 (10%)
Query: 10 SQIRFLLQSLNEANADSVFRELCQFI-EYGIEGSTMMLQTCMDHLNLHGTGLKNP----Q 64
SQI +L+ +L + N + +E+ + +G E +L+ H++ G G + Q
Sbjct: 11 SQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGDGKSSGKDFHQ 70
Query: 65 LESVVASVFKYIMDKPNFSTVFSQSV-------KITEINEQLLENLSDVLNLSLPERIGI 117
+ ++ I KPNF + ++ K + + L LS VL LS + + +
Sbjct: 71 TQFLIQECVSLIT-KPNFISTLCYAIDNPLHYQKSLKPSPHLFTQLSKVLKLSKVQEVIL 129
Query: 118 GLALSDSENLDALMCGKNFCMAQIERLCANPVPM----NSAEQIQNIIM----------- 162
GLALS+S N D F ++ L + V N Q+I +
Sbjct: 130 GLALSNSSNADLRGFAAQFVKQKLPDLLRSYVDADLGGNQEGGFQDIAIEVLHLLLSHLL 189
Query: 163 FLQRSSDL--SKHVDSLMQILSLLQSKDHTQFVLNPVL-PDELHDATSLRDLDLFHECRD 219
F Q+ S + +D+ ++ L ++ VL P+L PD+ RD+ L
Sbjct: 190 FGQKGSSGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPDK-------RDI-LMDRILP 241
Query: 220 DDFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLS---RILGAIA 276
D D L + E S+ D M E+GYG A +C+ I+ + + E+T S R+LG +A
Sbjct: 242 DSGD--LNKTMMESSLADFMQEVGYGFCASLEECRNIILQYG-VREVTASQVARVLGMMA 298
Query: 277 RTHAGLEDNQNTFSTFTLALGCSTMSDLPPLS----SWNVDVLVKAIKQLAPNTNWIRVV 332
RTH+GL D + + G SD S +WNV+VL+ +K++ PN N+ V
Sbjct: 299 RTHSGLSDGISLQTITNPVGGGGIWSDGKDKSDSSQAWNVEVLIDVVKEVNPNLNFKEVT 358
Query: 333 ENLDYEGFYIPTEEAFSFFM-SVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPP 391
LD+ GF I + + + + E FP+ + WK+ EGQLSF+++++ SP
Sbjct: 359 YELDHPGFLIRDSKGLQIVVYGIQRGLGMEVFPVDLIYRP-WKHAEGQLSFIQHSLLSP- 416
Query: 392 EVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYP 451
EVF FA + +D + + W LDL++ L +LSE+GH + + +P
Sbjct: 417 EVFCFADNPCHTVAIDTLKAPPEDDNREIATWKSLDLVESLLRLSEVGHYEQVKQLFSFP 476
Query: 452 LKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHI-WH---VNPNI-- 505
+K CP+ML+L + I+T+++ +++E+ + P+ + + ++ +ILH WH +P+I
Sbjct: 477 IKHCPDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQ 536
Query: 506 -----VLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVD 560
+ ++ + + RIL++ Q+LK LS +L P F I LA +AS++E +
Sbjct: 537 LIMHSMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLK 596
Query: 561 LEKWLSINLSTYKDVFFEECLKFVKE 586
L+KWL+ + + + F + C+ F+K
Sbjct: 597 LDKWLTDKIREHGEPFIQACVTFLKR 622
Score = 167 bits (424), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 114/157 (72%), Gaps = 4/157 (2%)
Query: 662 SEGYADDIEAEANSYFHQMFSG----QLTIEAMVQMLARFKESSVKREHSIFECMIGNLF 717
++ ++ +I+ EANSYF ++++ ++++ +++ML RFK+S++KRE +F CM+ NLF
Sbjct: 829 NQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLF 888
Query: 718 EEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTK 777
EEYRFFP+YP+++L I A LFG II+ LVT++ LG+ALR VL+ALRKP SKM+ FG
Sbjct: 889 EEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIA 948
Query: 778 ALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIE 814
AL++F +RL ++PQYC H+ I+H L +IE
Sbjct: 949 ALDRFKNRLKDYPQYCQHLASIAHFLQFPHHLQEYIE 985
Score = 40.4 bits (93), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 1292 IGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLK 1348
+ H+ IN + L H ++ V A++RA++E+V +V RS+ IA T +++V K
Sbjct: 1368 LAPHININVNIPLLQAHPQLKQCVRPAIERAVQELVHPVVDRSIKIAMTTCEQIVRK 1424
>sp|P87112|NOT1_SCHPO General negative regulator of transcription subunit 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=not1 PE=1 SV=1
Length = 2100
Score = 171 bits (432), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 86/223 (38%), Positives = 132/223 (59%), Gaps = 6/223 (2%)
Query: 962 PIEAPASE------VQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRAS 1015
P+ P +E V D I F INN+S LN K K+ + L Y PWF+ Y+V +R S
Sbjct: 853 PLNVPNAEGEIEESVCDNILFAINNLSQLNFNEKLKDVKDNLTPAYLPWFSHYIVTQRVS 912
Query: 1016 IEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLG 1075
E NF LY KFL+++ S L + + + T + ++ + S E++ LKNLGSWLG
Sbjct: 913 REANFLSLYGKFLEELKSSDLYKIVFRDTLQAILDIMNNNAETLSPSEKTNLKNLGSWLG 972
Query: 1076 KLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAI 1135
+T+ RN+ + ++ K L++E + G + V+PF K+LE SS+ ++PPNPW M I
Sbjct: 973 SITLLRNKPITTLQVSFKDLLLEGIDSGRIDRVLPFVCKVLEKASSSVIFKPPNPWLMGI 1032
Query: 1136 LGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKD 1178
L LL E+Y + ++NLKF+IE+L NL V M +I P+ + ++
Sbjct: 1033 LKLLVELYQFADFRLNLKFEIELLLNNLNVKMDNIEPSEMYRN 1075
Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 157/560 (28%), Positives = 277/560 (49%), Gaps = 46/560 (8%)
Query: 309 SWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYAC---QEPFPL 365
+W+ ++ KAI N NW ++ D F I + F +++ A Q F L
Sbjct: 292 AWDTVLMGKAIVSSFENLNWEAMLSMFDNPKFMITGTPSLVLFFTIFTNAYKLRQTNFTL 351
Query: 366 HAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQ-ANHAWL 424
+ +W+N QLS + + + SP +F P V +V LK S + N+A +
Sbjct: 352 DFL-WVLWRNPLPQLSIISHIILSPTSMFDIREFNVN-PVV-SVDSLKDYSEELVNYAKI 408
Query: 425 -------CLDLLDVLCQL-SEMGHASFARSMLEYPL--KQCPEMLLLGMAHINTAYNLIQ 474
C++L+ +L +L SE+ ++ S+ L K E+LLLG + A+N +Q
Sbjct: 409 YEKSNLNCIELVQILLRLLSEV--VTYETSLFLNFLDEKVSAELLLLGTLQLPLAWNPVQ 466
Query: 475 YEVSFAVFPMIIKSTMSNGMI-LHIWHVNPNIVLRGFVDAQNMEPDCTI-RILEICQELK 532
++F + + + + I NP L F+ + ++ ++ +++E E
Sbjct: 467 ESLAFQWCSDFFSNFKEHKFVFVRIERTNPQF-LFAFLRSLWLKDSSSVNQVVEFIIEND 525
Query: 533 ILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKD-----VFFEECLKFVKEV 587
S + + P+ FA+ +A +A+ ++ + + WL + ++D VF E L F+
Sbjct: 526 FTSHIGNIQPNRFALEIAALAAARKALSFQDWLDKKMLEFEDADGLNVFLVEVLDFL--- 582
Query: 588 QFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDS 647
R+ + +++ L ++ + V+L L ++ + S ++SE I+ Q + L
Sbjct: 583 -MSRAALQKNESEQKEESVV-LSIDTVNVLLTTLMDNVSI--SEEVSEHIKDVQILCLQV 638
Query: 648 TPRLQN-GEAADS-----STSEGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESS 701
PRL + G DS +T+ ++ D+E+E SYF ++ +++I +V L FK+S
Sbjct: 639 YPRLFSLGHDRDSIVIATNTTNSFSPDVESEVESYFQALYERRISIGKIVLTLQNFKKSE 698
Query: 702 VKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLD 761
R+ +F C+ +LF+EYRFFP YP L + AVLFGS+I+ +L++ + LG+ALR V
Sbjct: 699 NPRDLDLFACLQHSLFDEYRFFPDYPLEALALTAVLFGSLIQFELLSFVPLGVALRYVYQ 758
Query: 762 ALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARIS 821
AL P DSKMF FG +AL QF ++L ++ YCN IL I L+ ++ I +A
Sbjct: 759 ALLMPTDSKMFRFGMQALVQFQEKLPKYINYCNLILGIPSLQLVRPDIYDSIREMIASNE 818
Query: 822 SGHLESD------GASNPAA 835
+ +E D +NPA+
Sbjct: 819 NTEVEKDKLDSFSALANPAS 838
>sp|P25655|NOT1_YEAST General negative regulator of transcription subunit 1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=CDC39 PE=1 SV=3
Length = 2108
Score = 157 bits (396), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 146/267 (54%), Gaps = 10/267 (3%)
Query: 910 SSAQKLHNAVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASE 969
S AQ + V A + + +RP + + KF + + + E +
Sbjct: 733 SQAQVYQSIVEAATLANAPKERSRPVQEMIPLKFFAVDEVSCQINQ--------EGAPKD 784
Query: 970 VQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLD 1029
V +K+ F++NN++ N+ K E + L Y+ WF+ Y+V +RA EPN+HDLY K +
Sbjct: 785 VVEKVLFVLNNVTLANLNNKVDELKKSLTPNYFSWFSTYLVTQRAKTEPNYHDLYSKVIV 844
Query: 1030 KVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRARE 1089
+ S L++ +V T VLL ++ + ++ LKNL SWLG +T+ N+ ++ +
Sbjct: 845 AMGSGLLHQFMVNVTLRQLFVLLSTK--DEQAIDKKHLKNLASWLGCITLALNKPIKHKN 902
Query: 1090 IDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLK 1149
I + ++IEAY++ + V+PF +KIL+ S ++PPNPWT+ IL LL E+ N K
Sbjct: 903 IAFREMLIEAYKENRLEIVVPFVTKILQRASESKIFKPPNPWTVGILKLLIELNEKANWK 962
Query: 1150 MNLKFDIEVLFKNLGVDMKDITPTSLL 1176
++L F++EVL K+ + K + P++ +
Sbjct: 963 LSLTFEVEVLLKSFNLTTKSLKPSNFI 989
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 86/148 (58%), Gaps = 6/148 (4%)
Query: 651 LQNGEAADSSTSEGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFE 710
L NG+ A G +DIE E +Y +M+SG+L I+ ++++L R ++S + R+ +F
Sbjct: 585 LANGDIA------GINNDIEKEMQNYLQKMYSGELAIKDVIELLRRLRDSDLPRDQEVFT 638
Query: 711 CMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSK 770
C+ + E FF YP L +VLFGS+I QL+ L +A R ++ ++P +SK
Sbjct: 639 CITHAVIAESTFFQDYPLDALATTSVLFGSMILFQLLRGFVLDVAFRIIMRFAKEPPESK 698
Query: 771 MFVFGTKALEQFVDRLIEWPQYCNHILQ 798
MF F +A+ F RL E+PQYC +L+
Sbjct: 699 MFKFAVQAIYAFRIRLAEYPQYCKDLLR 726
>sp|Q8Y5X6|AROB_LISMO 3-dehydroquinate synthase OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=aroB PE=3 SV=1
Length = 365
Score = 51.2 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 17/89 (19%)
Query: 706 HSIFECMIGNLFE------EYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGV 759
H + + MIGN ++ + +FF PER+LR F +IKH L++ LTL LR +
Sbjct: 147 HPLGKNMIGNFYQPEAVIYDTQFFATLPERELRSG---FAEMIKHALISDLTL---LRAL 200
Query: 760 LDALRKPADSKMFVFGTKALEQFVDRLIE 788
+D +P D F TK L F+ R IE
Sbjct: 201 MDTFTEPKD-----FYTKDLTPFLQRGIE 224
>sp|Q09693|DPO4_SCHPO DNA polymerase type-X family protein pol4 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pol4 PE=3 SV=1
Length = 506
Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 325 NTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAV 368
N N ++ ++N+D EG PT + + + + + +YACQ PL V
Sbjct: 135 NNNEVKSIDNVDQEGSVYPTTKEYPYVLEIPRYACQRKTPLKCV 178
>sp|A5DUP0|U507_LODEL UPF0507 protein LELG_01076 OS=Lodderomyces elongisporus (strain ATCC
11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239)
GN=LELG_01076 PE=3 SV=1
Length = 1260
Score = 36.2 bits (82), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 942 KFGSALNIETLVAAAERRETPIEAPASE--VQDKISFIINNISALNVEAKAKEFTEILKE 999
K+G N+E+++A R + E P++ + D +SF+ + NVE K+ E
Sbjct: 781 KYGRLENLESILAD-NRLDFLAEDPSTHYNIFDYLSFLAGRYAKENVEKIEKKLIEFYFS 839
Query: 1000 QYYPWFAQY-MVMKRASIEPNFHDLYLKF 1027
Y+P+ A Y +V +P+ D Y+ +
Sbjct: 840 HYFPFEAHYKLVALNGKYDPSTRDWYIYY 868
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 466,197,805
Number of Sequences: 539616
Number of extensions: 19266523
Number of successful extensions: 53987
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 53808
Number of HSP's gapped (non-prelim): 178
length of query: 1353
length of database: 191,569,459
effective HSP length: 130
effective length of query: 1223
effective length of database: 121,419,379
effective search space: 148495900517
effective search space used: 148495900517
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)