Query 000683
Match_columns 1353
No_of_seqs 187 out of 243
Neff 5.5
Searched_HMMs 29240
Date Tue Mar 26 16:30:56 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000683.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_455-459//hhsearch_pdb/000683hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b8b_A General negative regula 1.0 1 1 703.8 34.1 481 314-818 89-596 (603)
2 4b89_A General negative regula 1.0 1 1 659.0 18.0 228 947-1181 16-243 (249)
3 4gmj_A CCR4-NOT transcription 1.0 1 1 658.1 20.4 221 965-1185 2-224 (229)
4 1hu3_A EIF4GII; heat repeat, t 1.0 1 1 29.5 7.2 65 968-1033 9-75 (260)
5 3rk6_A Polyadenylate-binding p 1.0 1 1 29.3 8.6 66 967-1033 16-88 (234)
6 2vso_E Eukaryotic initiation f 1.0 1 1 29.2 10.2 68 965-1033 31-105 (284)
7 1h2v_C 80 kDa nuclear CAP bind 1.0 1 1 18.9 9.3 94 426-540 296-404 (771)
8 1cfr_A CFR10I, restriction end 1.0 1 1 17.9 -8.2 23 509-531 20-45 (285)
9 4eql_A 4-substituted benzoates 1.0 1 1 14.8 -3.3 19 780-798 230-248 (581)
10 1uw4_B UPF2, regulator of nons 1.0 1 1 14.2 8.3 23 12-34 8-31 (248)
No 1
>4b8b_A General negative regulator of transcription subun; 2.80A {Saccharomyces cerevisiae S288C}
Probab=1.00 E-value=1 Score=703.80 Aligned_cols=481 Identities=21% Similarity=0.326 Sum_probs=378.4
Q ss_pred HHHHHHHHHCC-CCCHHHHHHHC-----CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCHHHHHHHHHH
Q ss_conf 99999984389-99989999630-----789997688225999999986532898553421366544-711346899998
Q 000683 314 VLVKAIKQLAP-NTNWIRVVENL-----DYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWK-NTEGQLSFLRYA 386 (1353)
Q Consensus 314 vlv~alk~~~p-~lnW~~Vi~~l-----D~~~f~i~d~~~l~ll~~~~~~~~~~~Fpi~~l~~~~W~-N~~~Qlsfl~~~ 386 (1353)
-+-.+++.+.. ++||.+|+..+ |. .-.-|...++.-+++++..+ -+++.++...|. .-.-.|.++-|-
T Consensus 89 q~~~~~~~~~~~~inW~~vFnlms~~~f~~-~~~~pt~asls~~~~~L~~~----~liD~F~~~dw~~~f~~~l~~~L~~ 163 (603)
T 4b8b_A 89 VIARSISSLQANQINWNRVFNLMSTKYFLS-APLMPTTASLSCLFAALHDG----PVIDEFFSCDWKVIFKLDLAIQLHK 163 (603)
T ss_dssp HHHHHHHTSCGGGSCHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHCSH----HHHHHHHHSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHCCCC----CHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 999999866645567999999988988733-88874188999999975888----4279997386367675899999973
Q ss_pred HHCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH--HH---HHHCCCHHHHHHHHHHHHHHCHHHHH
Q ss_conf 60999722357576-65444567887001012225654419999999--99---53067538999982324310846999
Q 000683 387 VASPPEVFTFAHSA-RQLPYVDAVPGLKLQSGQANHAWLCLDLLDVL--CQ---LSEMGHASFARSMLEYPLKQCPEMLL 460 (1353)
Q Consensus 387 l~~ppe~f~f~~~~-rk~v~~d~~~~~~~~~~~~~~~W~sldLie~L--~~---Lae~~~~~~vr~l~e~p~k~cpeill 460 (1353)
.+..-.-|++..++ -+.++.+. ++.+ ...=.+.|+.=++.- .. +++...-....++|+.-....||.+.
T Consensus 164 ~~~~qg~~dl~~~~~~~~~~~~~-p~~~----~~ll~~~si~~l~l~~~~~~~~~~~~~~~~~~~~~f~~d~~~~Peyla 238 (603)
T 4b8b_A 164 WSVQNGCFDLLNAEGTRKVSETI-PNTK----QSLLYLLSIASLNLELFLQREELSDGPMLAYFQECFFEDFNYAPEYLI 238 (603)
T ss_dssp CCTTTTCCCGGGCTTCCBSCSSS-CCCS----CCGGGBHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CCCCCCCHHHHCCCCCEECCCCC-CCCC----CCEEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 58557830233188730125679-8766----650033114356699999888751141389999998645211879999
Q ss_pred HHHHHCCCCC------HHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 9872038741------2899999997658976089957-99999982190469999987320398407899999998324
Q 000683 461 LGMAHINTAY------NLIQYEVSFAVFPMIIKSTMSN-GMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKI 533 (1353)
Q Consensus 461 lgl~qi~~~~------~~l~~ell~~Lf~~fl~~~~~s-~vi~~lW~~~~~~v~~~l~d~y~~d~~~l~rIldvaqelk~ 533 (1353)
+++..-.+.| ..+.+|++-.||-..+...+.+ .-+.+.+. ++.-++..+...+.+|+.+++|++|||+|+||
T Consensus 239 l~~~~~~k~~~~~~en~~~i~~l~~~l~~~~~~~~~~~l~~~i~~~~-~~~k~~~~~~~Ii~kD~~~l~rildi~~elk~ 317 (603)
T 4b8b_A 239 LALVKEMKRFVLLIENRTVIDEILITLLIQVHNKSPSSFKDVISTIT-DDSKIVDAAKIIINSDDAPIANFLKSLLDTGR 317 (603)
T ss_dssp HHHHHTHHHHHHHHCCHHHHHHHHHHHHHHHHHSCGGGHHHHHHHCC-CHHHHHHHHHHHHHHSCSCCSHHHHHHHHTTC
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCH
T ss_conf 99996021110101330689999999999998418488999999746-71678999999982582668999999988573
Q ss_pred HHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 65643057804589999986204525779999987610730589999999999710343344578787886444455013
Q 000683 534 LSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEK 613 (1353)
Q Consensus 534 L~~ll~~~p~~F~idLA~lAsrre~l~LekWL~~~l~~~g~~F~~a~l~FL~~k~~~~~~~~~~~~~~~~~~~~~L~~et 613 (1353)
|+.|++..||.|++|+|++|+||||+|||+|++++++.+|.+ +|++||+.|+..+. +. .+.++..+|.++|
T Consensus 318 L~~lL~~~p~~faldLAalAs~rg~lnLe~WL~~~l~~~~~~---~lL~FL~~K~~~e~----~~--~~~~~~~~L~i~t 388 (603)
T 4b8b_A 318 LDTVINKLPFNEAFKILPCARQIGWEGFDTFLKTKVSPSNVD---VVLESLEVQTKMTD----TN--TPFRSLKTFDLFA 388 (603)
T ss_dssp HHHHHHHSCTTHHHHTHHHHHHHTCCCHHHHHHHHCCTTTHH---HHHHHHHHHHHCCC----C----CSCTTTSCCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCH---HHHHHHHHHHHCCC----CC--CCCCCCCEECHHH
T ss_conf 999987488788999999988537025999999987504736---99999999861554----57--8877774003999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC-CCCC-----CCCCCCCHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 999999998410878846789999999998610088766898-8898-----8888990349999999999850355689
Q 000683 614 IPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGE-AADS-----STSEGYADDIEAEANSYFHQMFSGQLTI 687 (1353)
Q Consensus 614 ~~~ll~~L~~~~~~~~s~~~~e~l~~~~~~~~~~~prL~~~~-~~d~-----~~~~~~~~dVE~ean~yfqkmY~~eisI 687 (1353)
+++++++|++. .++.+..++++.++..|+++||||+|+| |+|+ ..++.|++|||+|||+||||||++++||
T Consensus 389 v~~lLk~L~~~---~l~~e~~e~l~~vq~~~lq~yPRLiN~G~G~D~~i~an~~~~~~~~dIE~ean~yfqkmY~~eisI 465 (603)
T 4b8b_A 389 FHSLIEVLNKC---PLDVLQLQRFESLEFSLLIAFPRLINFGFGHDEAILANGDIAGINNDIEKEMQNYLQKMYSGELAI 465 (603)
T ss_dssp HHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHCGGGTTTTSSCHHHHHTTCSSSCCCHHHHHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCH
T ss_conf 99999999836---798678999999999998858164338875114554267777897779999999999997389879
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999842088611002587788867744146999937999999999988765403421269999999998713999
Q 000683 688 EAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPA 767 (1353)
Q Consensus 688 ~~ii~~L~~~k~S~~~reqdiFaCMih~LFdEYrff~~YP~~eL~iTA~LFG~lI~~~Li~~~~L~iALr~ILeAlr~p~ 767 (1353)
+++|++|++||+|+++||||||+||||+||||||||++||++||++||+|||+||+|+||++.+|++||||||||+|+|+
T Consensus 466 ~~iV~~L~~~K~S~~~rdqdvFaCMIh~LFdEyrff~~YP~~eL~iTA~LFG~LI~~~Ll~~~~L~iALr~ILeAlrkp~ 545 (603)
T 4b8b_A 466 KDVIELLRRLRDSDLPRDQEVFTCITHAVIAESTFFQDYPLDALATTSVLFGSMILFQLLRGFVLDVAFRIIMRFAKEPP 545 (603)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHGGGGGGSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 99999999862699846889999999999999987761899999999999999999736576459999999999981899
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHHHH
Q ss_conf 986411799999998884222169889984-355543451999999999998
Q 000683 768 DSKMFVFGTKALEQFVDRLIEWPQYCNHIL-QISHLRSTHAELVAFIERALA 818 (1353)
Q Consensus 768 ~skmf~FGi~AL~qF~~RL~ewPqyC~~Ll-~ip~l~~~~p~l~~~ie~~~~ 818 (1353)
+||||+||++||+||++||+|||+||.+++ +|||| +++|++|++|+++..
T Consensus 546 ~skmf~FGi~ALeqF~~RL~ewPqyc~~lL~~ip~l-q~~P~l~q~i~~~a~ 596 (603)
T 4b8b_A 546 ESKMFKFAVQAIYAFRIRLAEYPQYCKDLLRDVPAL-KSQAQVYQSIVEAAT 596 (603)
T ss_dssp TSHHHHHHHHHHHHTGGGGGGCHHHHHHHHHHCGGG-GGCHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHC
T ss_conf 971899999999999998877799999999749575-568699999999973
No 2
>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B
Probab=1.00 E-value=1 Score=658.97 Aligned_cols=228 Identities=33% Similarity=0.645 Sum_probs=219.9
Q ss_pred CCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 56456799741178987799832225452420247820199989999998561061265577777621358740489999
Q 000683 947 LNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLK 1026 (1353)
Q Consensus 947 ~nidtL~~~~e~~~~~i~~P~e~vqdKI~FiiNNls~~Nl~~K~~El~~~l~~~y~~WFA~YLV~kRas~EpN~H~LY~~ 1026 (1353)
.+||++ .+...++.||++++|||+||+||+|++|+++|++|++++|+++||+|||+|||++||++|||||++|++
T Consensus 16 ~~v~~~-----~~~~~~e~P~~~v~dki~Fi~NNls~~Nl~~k~~el~~~l~~~y~~WFA~YLV~~Ra~~EpN~H~lY~~ 90 (249)
T 4b89_A 16 FAVDEV-----SCQINQEGAPKDVVEKVLFVLNNVTLANLNNKVDELKKSLTPNYFSWFSTYLVTQRAKTEPNYHDLYSK 90 (249)
T ss_dssp BCCCCC-----CCCSCCCCCCHHHHHHHHHHHHHCCTTTHHHHHHHHHHHCCGGGHHHHHHHHHHHTTTTCGGGHHHHHH
T ss_pred CCCCCC-----CCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 156899-----988667893989974461000038867899999999999878889999999996452037753899999
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEE
Q ss_conf 99981873589999999999999972420002685788889976776665543048543137788357899998608416
Q 000683 1027 FLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMI 1106 (1353)
Q Consensus 1027 fld~l~~~~L~~~il~~Ty~~i~~LL~se~~~~~s~eRslLKNLG~WLG~lTLarNkPI~~k~ld~K~LL~eaY~~g~L~ 1106 (1353)
|+++++++.|+++|+++||++|++||+++++ +++||++|||||+|||+|||||||||+|++||+|+||+|||++|+|.
T Consensus 91 ~l~~l~~~~L~~~vl~~T~~~i~~LL~~~~i--~~~eRs~LKNLG~WLG~iTLarNkPI~~~~ld~K~LL~eay~~g~L~ 168 (249)
T 4b89_A 91 VIVAMGSGLLHQFMVNVTLRQLFVLLSTKDE--QAIDKKHLKNLASWLGCITLALNKPIKHKNIAFREMLIEAYKENRLE 168 (249)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHTBSCG--GGSCHHHHHHHHHHHHHHTGGGTCCCCTTTBCHHHHHHHHHHHTCHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHHCCCEE
T ss_conf 9999587789999999999999999634315--76789999999999859987048872211358999999999729847
Q ss_pred EEECHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
Q ss_conf 981011230013577754569991199999999998129863114699999998541899665555211221022
Q 000683 1107 AVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKR 1181 (1353)
Q Consensus 1107 ~ViPFV~KVLe~~~~S~vFkPPNPWtm~IL~lL~Ely~~~~LKlnLKFEIEvL~K~L~ld~~di~ps~~L~~r~~ 1181 (1353)
+|||||||||++|++|+||+|||||||+||++|+|||+.++||+|+|||||||||+|++|++|++|+++|+++++
T Consensus 169 ~vIPFVcKvLe~~k~SkiFkPPNPWt~~IL~lL~Ely~~~~LKlnlkFEIEvL~k~l~l~l~~i~ps~~l~~~~~ 243 (249)
T 4b89_A 169 IVVPFVTKILQRASESKIFKPPNPWTVGILKLLIELNEKANWKLSLTFEVEVLLKSFNLTTKSLKPSNFINTPEV 243 (249)
T ss_dssp HHHHHHHHHHGGGTTCSSSSTTCHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCCGGGSCCCCCC-----
T ss_pred EEEEHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCHHH
T ss_conf 984189999875635871689993199999999999838121475999999999975998676784120588789
No 3
>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A
Probab=1.00 E-value=1 Score=658.13 Aligned_cols=221 Identities=47% Similarity=0.837 Sum_probs=215.8
Q ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 99832225452420247820199989999998561061265577777621358740489999999818735899999999
Q 000683 965 APASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQAT 1044 (1353)
Q Consensus 965 ~P~e~vqdKI~FiiNNls~~Nl~~K~~El~~~l~~~y~~WFA~YLV~kRas~EpN~H~LY~~fld~l~~~~L~~~il~~T 1044 (1353)
.++|+|+|||+|||||+|++|+++|++|++++++++||+|||+|||++|||+|||||+||++|+++++++.|+++|+++|
T Consensus 2 ~~de~v~dki~Fi~NNls~~N~~~k~~elk~~l~~~y~~Wfa~YLV~~Ras~EpN~h~lY~~fl~~l~~~~l~~~vl~~T 81 (229)
T 4gmj_A 2 MLEENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNET 81 (229)
T ss_dssp CSCHHHHHHHHHHHHSCCSSTHHHHHHHHHHHSCGGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHH
T ss_conf 87577664440110139888999999999999868789999999998665216543799999999968088999999999
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCC--EEEEECHHHHHCCCCCCC
Q ss_conf 999999724200026857888899767766655430485431377883578999986084--169810112300135777
Q 000683 1045 YENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSS 1122 (1353)
Q Consensus 1045 y~~i~~LL~se~~~~~s~eRslLKNLG~WLG~lTLarNkPI~~k~ld~K~LL~eaY~~g~--L~~ViPFV~KVLe~~~~S 1122 (1353)
|++|++||++++++.+++||++|||||+|||+|||||||||+|++||+|+||+|||++|+ |++||||||||||+|++|
T Consensus 82 ~~~i~~LL~s~~~~~~~~eR~~LKNLG~WLG~lTLarnkPI~~~~l~~K~LL~eay~~g~~rL~~viPFVcKvLe~~~~S 161 (229)
T 4gmj_A 82 YRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRS 161 (229)
T ss_dssp HHHHHHHHTSCCCTTCHHHHHHHHHHHHHHHHHTGGGTCCCCTTTCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCC
T ss_conf 99999997301112365799999989999889987158983321327999999999779753887510699999755168
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 545699911999999999981298631146999999985418996655552112210221018
Q 000683 1123 LAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEG 1185 (1353)
Q Consensus 1123 ~vFkPPNPWtm~IL~lL~Ely~~~~LKlnLKFEIEvL~K~L~ld~~di~ps~~L~~r~~~~~~ 1185 (1353)
+|||||||||||||++|+|||+.|+||+|+|||||||||+|++|++|++|+++|++|++..+.
T Consensus 162 ~iFkPPNPW~~~IL~lL~Ely~~~~lKlnlkFEIEvLfk~l~~~~~~i~ps~~l~~~~~~~~~ 224 (229)
T 4gmj_A 162 VVFRPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNL 224 (229)
T ss_dssp TTTSTTCHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTTCCGGGSCCCSGGGCSTTGGGC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHCCCHHCCC
T ss_conf 847899836999999999998475630558999999999769985656813666243110036
No 4
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=1.00 E-value=1 Score=29.53 Aligned_cols=65 Identities=18% Similarity=0.237 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--HCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
Q ss_conf 3222545242024782019998999999856--10612655777776213587404899999998187
Q 000683 968 SEVQDKISFIINNISALNVEAKAKEFTEILK--EQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNS 1033 (1353)
Q Consensus 968 e~vqdKI~FiiNNls~~Nl~~K~~El~~~l~--~~y~~WFA~YLV~kRas~EpN~H~LY~~fld~l~~ 1033 (1353)
+.+..+|..++|-||+.|++.=+.++.++-- ++-..=+. -+|.++|..||+|=.+|..|...|+.
T Consensus 9 ~~l~r~v~giLNKLT~~nf~~i~~ql~~~~i~~~~~l~~vi-~~if~kA~~ep~f~~~YA~Lc~~L~~ 75 (260)
T 1hu3_A 9 QELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVI-DLVFEKAIDEPSFSVAYANMCRCLVT 75 (260)
T ss_dssp HHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCCSHHHHHHHH-HHHHHHHHHCGGGHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999999998108879999999999976079999999999-99999987181179999999999997
No 5
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=29.32 Aligned_cols=66 Identities=15% Similarity=0.293 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHH-----HCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
Q ss_conf 8322254524202478--2019998999999856-----10612655777776213587404899999998187
Q 000683 967 ASEVQDKISFIINNIS--ALNVEAKAKEFTEILK-----EQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNS 1033 (1353)
Q Consensus 967 ~e~vqdKI~FiiNNls--~~Nl~~K~~El~~~l~-----~~y~~WFA~YLV~kRas~EpN~H~LY~~fld~l~~ 1033 (1353)
++.+..+|..|+|-|| ++|++.-++++.+.+. ++...-+..-++.| |-.||||-.+|.++...+..
T Consensus 16 ~~~l~r~v~~iLNkLT~~p~~f~~l~~~i~~~~~~~~~~~~~L~~vi~lIfek-Ai~ep~fs~~YA~LC~~l~~ 88 (234)
T 3rk6_A 16 GSTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQ-ATSIPNFSYMGARLCNYLSH 88 (234)
T ss_dssp --CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHH-HHSSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHH
T ss_conf 29999999999997468865189999999999843799899999999999999-98681328999999999998
No 6
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=1.00 E-value=1 Score=29.25 Aligned_cols=68 Identities=19% Similarity=0.287 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-------CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
Q ss_conf 99832225452420247820199989999998561-------0612655777776213587404899999998187
Q 000683 965 APASEVQDKISFIINNISALNVEAKAKEFTEILKE-------QYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNS 1033 (1353)
Q Consensus 965 ~P~e~vqdKI~FiiNNls~~Nl~~K~~El~~~l~~-------~y~~WFA~YLV~kRas~EpN~H~LY~~fld~l~~ 1033 (1353)
...+.+.-+|..|+|-||+.|++.=+.++.++-.. +-..=+.. +|.+.|..||+|=.+|.+|...|..
T Consensus 31 ~~~e~l~r~vkgiLNKLT~~nf~~i~~ql~~~~~~~~~~~~~~~l~~vi~-~If~kA~~ep~fs~~YA~Lc~~l~~ 105 (284)
T 2vso_E 31 LDKDEVERKMKSLLNKLTLEMFDAISSEILAIANISVWETNGETLKAVIE-QIFLKACDEPHWSSMYAQLCGKVVK 105 (284)
T ss_dssp CCHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHGGGGCSBCHHHHHHHH-HHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 45999999999997108877899999999999865025683899999999-9999987272138999999999998
No 7
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=1.00 E-value=1 Score=18.86 Aligned_cols=94 Identities=14% Similarity=0.266 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC--CCC-----CHHHHHHH
Q ss_conf 99999999953067538999982324310846999987203874128999999976589760--899-----57999999
Q 000683 426 LDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIK--STM-----SNGMILHI 498 (1353)
Q Consensus 426 ldLie~L~~Lae~~~~~~vr~l~e~p~k~cpeilllgl~qi~~~~~~l~~ell~~Lf~~fl~--~~~-----~s~vi~~l 498 (1353)
-|.+-.++..-+...-..++.|+.+|.++ .| .+-+-++-.+|...+. .++ |..++..+
T Consensus 296 re~ildIi~~~~~nrkecA~~Ll~l~~~~--------------~~-~~e~~iVE~i~~el~~LP~p~~~~iyY~sll~eL 360 (771)
T 1h2v_C 296 EENLHCIIKSHWKERKTCAAQLVSYPGKN--------------KI-PLNYHIVEVIFAELFQLPAPPHIDVMYTTLLIEL 360 (771)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCSS--------------CC-CHHHHHHHHHHHHHTCSSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHCCCCCC--------------CC-CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999975677999999996699877--------------66-1889999999999853899832778999999999
Q ss_pred HHHCHH----HHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 821904----69999987320----3984078999999983246564305
Q 000683 499 WHVNPN----IVLRGFVDAQN----MEPDCTIRILEICQELKILSSVLEM 540 (1353)
Q Consensus 499 W~~~~~----~v~~~l~d~y~----~d~~~l~rIldvaqelk~L~~ll~~ 540 (1353)
.+.+|. .+.+++...|. .|..++.|++| |.+..|..
T Consensus 361 Ckl~P~~~~~v~~~ai~~lY~~i~~md~e~~~Rf~d------wFShhLSN 404 (771)
T 1h2v_C 361 CKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFIN------WFSHHLSN 404 (771)
T ss_dssp HHHSTTTHHHHHHHHHHHHHHTGGGBCHHHHHHHHH------HHHHHHTT
T ss_pred HHHCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH------HHHHHHHC
T ss_conf 974867689999999999997622247899999999------99999746
No 8
>1cfr_A CFR10I, restriction endonuclease; restriction enzyme; 2.15A {Citrobacter freundii} SCOP: c.52.1.7
Probab=1.00 E-value=1 Score=17.87 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=12.2
Q ss_pred HHHHHHHCCCCH---HHHHHHHHHHH
Q ss_conf 998732039840---78999999983
Q 000683 509 GFVDAQNMEPDC---TIRILEICQEL 531 (1353)
Q Consensus 509 ~l~d~y~~d~~~---l~rIldvaqel 531 (1353)
+++++|.+++.. .+.+|+-.++-
T Consensus 20 ~~~~~~~~~~i~~~~~~e~L~~~~n~ 45 (285)
T 1cfr_A 20 AFVAYASHIDINTTEFSKVLSGLRDF 45 (285)
T ss_dssp HHHHHHHTSCTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 99999853899986199999999999
No 9
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=1.00 E-value=1 Score=14.81 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHC
Q ss_conf 9988842221698899843
Q 000683 780 EQFVDRLIEWPQYCNHILQ 798 (1353)
Q Consensus 780 ~qF~~RL~ewPqyC~~Ll~ 798 (1353)
..|+.-..+|...|..|..
T Consensus 230 ~~~~~L~~~weel~~dI~~ 248 (581)
T 4eql_A 230 RAIEVLKNSWEELCSNIRS 248 (581)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999998889999999983
No 10
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14
Probab=1.00 E-value=1 Score=14.24 Aligned_cols=23 Identities=26% Similarity=0.587 Sum_probs=11.3
Q ss_pred HHHHH-HHHHHHCHHHHHHHHHHH
Q ss_conf 99999-752433137899999999
Q 000683 12 IRFLL-QSLNEANADSVFRELCQF 34 (1353)
Q Consensus 12 I~~Lv-~~l~k~n~~~~~~el~ql 34 (1353)
||.|+ ..|+|+|.+.+...|-++
T Consensus 8 ir~Li~~~L~~~~~~~vlk~lrKl 31 (248)
T 1uw4_B 8 VRKLLYKDLSKVTTEKVLRQMRKL 31 (248)
T ss_dssp HHHHHHTTCSTTSHHHHHHHHHTS
T ss_pred HHHHHHHHCCCCCHHHHHHHHHCC
T ss_conf 999999872504599999999808
Done!