Query 000684
Match_columns 1352
No_of_seqs 637 out of 3064
Neff 6.7
Searched_HMMs 46136
Date Mon Apr 1 21:56:02 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000684.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000684hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0384 Chromodomain-helicase 100.0 4E-219 9E-224 1980.2 74.2 1106 5-1217 217-1371(1373)
2 KOG0385 Chromatin remodeling c 100.0 9E-155 2E-159 1358.9 60.8 769 166-1001 157-957 (971)
3 PLN03142 Probable chromatin-re 100.0 4E-129 1E-133 1238.0 72.6 786 162-1009 156-996 (1033)
4 KOG0386 Chromatin remodeling c 100.0 4E-101 9E-106 927.4 29.3 515 162-701 380-907 (1157)
5 KOG0389 SNF2 family DNA-depend 100.0 7.9E-98 2E-102 881.7 40.0 472 165-644 387-911 (941)
6 KOG0391 SNF2 family DNA-depend 100.0 1.7E-97 4E-102 890.6 37.8 466 169-644 609-1410(1958)
7 KOG0388 SNF2 family DNA-depend 100.0 2E-97 4E-102 860.3 35.5 465 165-644 557-1177(1185)
8 KOG0387 Transcription-coupled 100.0 3.9E-91 8.5E-96 826.4 39.6 479 175-670 204-701 (923)
9 KOG0392 SNF2 family DNA-depend 100.0 2.1E-84 4.5E-89 790.2 36.6 462 175-647 974-1480(1549)
10 KOG0383 Predicted helicase [Ge 100.0 1.8E-77 3.8E-82 727.6 9.3 545 12-575 131-696 (696)
11 KOG0390 DNA repair protein, SN 100.0 2E-73 4.4E-78 697.0 41.4 461 174-644 236-730 (776)
12 KOG1015 Transcription regulato 100.0 3.1E-68 6.7E-73 631.0 36.4 481 175-671 667-1321(1567)
13 COG0553 HepA Superfamily II DN 100.0 5.8E-67 1.3E-71 686.5 39.2 472 167-644 328-845 (866)
14 KOG1002 Nucleotide excision re 100.0 6.8E-65 1.5E-69 573.1 33.7 464 163-644 172-772 (791)
15 KOG4439 RNA polymerase II tran 100.0 1.5E-63 3.3E-68 583.3 34.1 467 162-643 312-880 (901)
16 KOG1016 Predicted DNA helicase 100.0 3.6E-58 7.9E-63 536.2 24.1 473 175-668 253-890 (1387)
17 KOG1000 Chromatin remodeling p 100.0 1.3E-53 2.8E-58 483.8 33.9 412 175-641 197-623 (689)
18 PRK04914 ATP-dependent helicas 100.0 1.3E-51 2.8E-56 526.4 43.3 419 175-644 151-628 (956)
19 KOG1001 Helicase-like transcri 100.0 1.5E-48 3.3E-53 482.4 24.0 446 179-642 135-671 (674)
20 PF00176 SNF2_N: SNF2 family N 100.0 1.5E-41 3.3E-46 391.0 24.3 277 180-466 1-299 (299)
21 TIGR00603 rad25 DNA repair hel 100.0 8.9E-37 1.9E-41 378.8 37.5 340 174-630 253-616 (732)
22 PRK13766 Hef nuclease; Provisi 100.0 2.3E-33 4.9E-38 364.3 37.6 438 175-638 14-496 (773)
23 KOG0298 DEAD box-containing he 100.0 3.3E-31 7.2E-36 329.2 18.1 262 192-465 371-690 (1394)
24 COG1111 MPH1 ERCC4-like helica 100.0 5.3E-28 1.1E-32 280.2 36.1 411 175-643 14-503 (542)
25 COG1061 SSL2 DNA or RNA helica 100.0 5.8E-27 1.3E-31 284.2 32.8 362 174-633 34-406 (442)
26 PHA02558 uvsW UvsW helicase; P 100.0 1.5E-26 3.2E-31 285.6 35.0 337 174-621 112-455 (501)
27 PTZ00110 helicase; Provisional 99.9 8.7E-24 1.9E-28 263.0 34.8 321 175-621 151-484 (545)
28 KOG0331 ATP-dependent RNA heli 99.9 3.5E-24 7.5E-29 255.2 27.5 319 176-620 113-447 (519)
29 PRK11776 ATP-dependent RNA hel 99.9 4.4E-23 9.5E-28 253.0 33.8 315 175-621 25-349 (460)
30 PRK01297 ATP-dependent RNA hel 99.9 5.3E-23 1.2E-27 253.2 34.5 318 175-621 108-442 (475)
31 TIGR00614 recQ_fam ATP-depende 99.9 5.4E-23 1.2E-27 252.5 33.3 308 175-615 10-329 (470)
32 PRK10590 ATP-dependent RNA hel 99.9 7.7E-23 1.7E-27 250.4 34.3 323 175-630 22-359 (456)
33 PRK04837 ATP-dependent RNA hel 99.9 6.3E-23 1.4E-27 249.0 31.5 315 176-620 30-361 (423)
34 PLN00206 DEAD-box ATP-dependen 99.9 8.6E-23 1.9E-27 253.2 33.1 317 175-621 142-475 (518)
35 PRK11634 ATP-dependent RNA hel 99.9 3.8E-22 8.2E-27 250.8 36.8 326 175-633 27-362 (629)
36 KOG0330 ATP-dependent RNA heli 99.9 7.5E-23 1.6E-27 229.5 25.6 323 176-631 83-415 (476)
37 PRK11192 ATP-dependent RNA hel 99.9 4.9E-22 1.1E-26 242.1 34.1 314 175-614 22-347 (434)
38 KOG0354 DEAD-box like helicase 99.9 4.1E-22 8.9E-27 243.8 32.3 402 174-615 60-526 (746)
39 PRK04537 ATP-dependent RNA hel 99.9 5.5E-22 1.2E-26 247.9 33.3 316 175-620 30-363 (572)
40 PRK11057 ATP-dependent DNA hel 99.9 6.6E-22 1.4E-26 249.4 31.7 304 175-613 24-337 (607)
41 TIGR01389 recQ ATP-dependent D 99.9 5.9E-22 1.3E-26 250.1 30.1 304 175-613 12-325 (591)
42 PTZ00424 helicase 45; Provisio 99.9 2.1E-21 4.6E-26 234.0 33.6 318 175-621 49-374 (401)
43 PLN03137 ATP-dependent DNA hel 99.9 4.4E-21 9.5E-26 244.2 30.6 311 175-616 459-784 (1195)
44 COG0513 SrmB Superfamily II DN 99.9 1.4E-20 3E-25 232.6 32.6 331 175-634 50-392 (513)
45 KOG1123 RNA polymerase II tran 99.9 1.7E-21 3.8E-26 222.7 19.9 340 174-626 300-658 (776)
46 TIGR00643 recG ATP-dependent D 99.9 1.1E-19 2.4E-24 230.2 35.1 306 175-613 234-560 (630)
47 TIGR00580 mfd transcription-re 99.9 6.6E-20 1.4E-24 237.1 33.2 310 174-621 449-770 (926)
48 TIGR03817 DECH_helic helicase/ 99.9 4.2E-20 9.1E-25 236.6 31.2 331 176-630 36-395 (742)
49 PRK10689 transcription-repair 99.9 5E-20 1.1E-24 242.8 32.0 310 175-619 599-917 (1147)
50 PRK13767 ATP-dependent helicas 99.9 1.4E-19 3E-24 236.2 33.1 324 175-616 31-395 (876)
51 PRK10917 ATP-dependent DNA hel 99.9 1.2E-19 2.5E-24 231.6 30.5 310 174-619 259-587 (681)
52 KOG0333 U5 snRNP-like RNA heli 99.8 1.2E-20 2.6E-25 218.0 16.3 343 175-621 266-624 (673)
53 PRK11448 hsdR type I restricti 99.8 5.3E-19 1.2E-23 232.4 32.3 359 174-619 411-816 (1123)
54 KOG0350 DEAD-box ATP-dependent 99.8 1.1E-19 2.4E-24 209.2 21.8 372 176-633 159-550 (620)
55 PF13907 DUF4208: Domain of un 99.8 4.5E-21 9.8E-26 185.1 8.8 96 1080-1215 5-100 (100)
56 KOG0345 ATP-dependent RNA heli 99.8 7.9E-19 1.7E-23 201.3 27.4 317 175-616 27-361 (567)
57 PRK02362 ski2-like helicase; P 99.8 6.2E-18 1.3E-22 218.4 31.4 317 175-620 22-396 (737)
58 KOG0328 Predicted ATP-dependen 99.8 1.4E-18 3E-23 187.9 21.1 315 177-622 50-374 (400)
59 TIGR01587 cas3_core CRISPR-ass 99.8 8E-18 1.7E-22 200.0 28.9 320 198-635 2-355 (358)
60 TIGR02621 cas3_GSU0051 CRISPR- 99.8 1E-17 2.2E-22 211.4 28.4 313 174-617 13-390 (844)
61 KOG0341 DEAD-box protein abstr 99.8 6E-19 1.3E-23 196.9 14.6 323 176-629 192-536 (610)
62 KOG0342 ATP-dependent RNA heli 99.8 3.9E-18 8.5E-23 197.2 20.1 332 175-638 103-451 (543)
63 PRK01172 ski2-like helicase; P 99.8 8.2E-17 1.8E-21 206.5 32.4 309 175-618 21-375 (674)
64 PRK00254 ski2-like helicase; P 99.8 9.7E-17 2.1E-21 206.9 31.6 317 175-622 22-389 (720)
65 TIGR03714 secA2 accessory Sec 99.8 1.4E-16 2.9E-21 199.5 29.8 128 491-629 406-542 (762)
66 PRK09200 preprotein translocas 99.8 2.6E-16 5.7E-21 198.7 31.5 130 491-630 410-547 (790)
67 KOG0348 ATP-dependent RNA heli 99.7 1.8E-16 3.9E-21 184.0 25.7 365 176-634 159-565 (708)
68 KOG0343 RNA Helicase [RNA proc 99.7 1.1E-16 2.3E-21 186.2 23.2 331 175-635 90-435 (758)
69 PHA02653 RNA helicase NPH-II; 99.7 2.8E-16 6.1E-21 197.5 27.7 334 165-623 149-516 (675)
70 KOG0335 ATP-dependent RNA heli 99.7 4.7E-17 1E-21 191.6 19.3 323 174-615 94-440 (482)
71 KOG0336 ATP-dependent RNA heli 99.7 4.6E-17 9.9E-22 183.2 18.1 316 176-621 242-572 (629)
72 COG0514 RecQ Superfamily II DN 99.7 7E-16 1.5E-20 187.9 29.0 309 175-621 16-337 (590)
73 PRK12898 secA preprotein trans 99.7 5.1E-16 1.1E-20 192.4 27.4 130 491-630 455-592 (656)
74 KOG0339 ATP-dependent RNA heli 99.7 4.1E-16 8.9E-21 179.7 22.7 321 176-624 245-578 (731)
75 KOG0340 ATP-dependent RNA heli 99.7 6.8E-16 1.5E-20 172.3 23.5 320 176-624 29-364 (442)
76 TIGR00963 secA preprotein tran 99.7 2.1E-16 4.6E-21 196.6 21.5 118 492-614 388-512 (745)
77 KOG0338 ATP-dependent RNA heli 99.7 3.9E-16 8.4E-21 180.3 21.8 327 175-631 202-541 (691)
78 TIGR00348 hsdR type I site-spe 99.7 4.4E-15 9.5E-20 189.1 32.6 364 175-619 237-649 (667)
79 KOG4284 DEAD box protein [Tran 99.7 2.4E-16 5.2E-21 185.5 18.8 312 177-611 48-371 (980)
80 PRK09401 reverse gyrase; Revie 99.7 1.7E-15 3.8E-20 200.7 27.7 296 174-606 78-431 (1176)
81 PRK09751 putative ATP-dependen 99.7 3.2E-15 6.9E-20 198.7 29.0 96 508-606 243-371 (1490)
82 COG1200 RecG RecG-like helicas 99.7 1.3E-14 2.9E-19 176.2 28.9 315 175-612 261-584 (677)
83 TIGR03158 cas3_cyano CRISPR-as 99.7 2E-14 4.3E-19 170.8 29.2 85 508-604 271-357 (357)
84 COG1201 Lhr Lhr-like helicases 99.7 2.1E-14 4.6E-19 180.8 30.3 334 175-637 21-376 (814)
85 KOG0326 ATP-dependent RNA heli 99.6 8.4E-16 1.8E-20 168.9 13.0 324 177-636 108-442 (459)
86 KOG0347 RNA helicase [RNA proc 99.6 1.3E-14 2.8E-19 169.2 22.8 362 175-643 200-613 (731)
87 KOG0332 ATP-dependent RNA heli 99.6 1.3E-14 2.8E-19 162.9 20.6 328 161-620 91-442 (477)
88 TIGR01054 rgy reverse gyrase. 99.6 2.3E-14 4.9E-19 190.4 26.4 280 174-590 76-408 (1171)
89 cd00079 HELICc Helicase superf 99.6 2.1E-15 4.5E-20 151.8 12.3 120 493-615 12-131 (131)
90 KOG0334 RNA helicase [RNA proc 99.6 1.1E-14 2.5E-19 182.0 20.3 319 174-620 385-719 (997)
91 PF09111 SLIDE: SLIDE; InterP 99.6 5.6E-16 1.2E-20 152.9 6.9 95 896-1002 12-112 (118)
92 PRK05580 primosome assembly pr 99.6 2.8E-13 6E-18 172.9 33.2 366 174-619 142-549 (679)
93 COG1205 Distinct helicase fami 99.6 1.1E-13 2.5E-18 178.5 27.8 331 176-630 70-431 (851)
94 KOG0344 ATP-dependent RNA heli 99.6 2.8E-14 6.1E-19 169.2 19.6 317 176-620 158-494 (593)
95 COG4096 HsdR Type I site-speci 99.6 2.1E-14 4.5E-19 176.1 18.9 355 174-619 163-546 (875)
96 COG1204 Superfamily II helicas 99.6 1.5E-13 3.3E-18 175.2 27.4 329 176-630 31-416 (766)
97 TIGR01970 DEAH_box_HrpB ATP-de 99.6 1.4E-13 3E-18 177.1 27.4 107 509-621 209-336 (819)
98 PF04851 ResIII: Type III rest 99.6 3.6E-15 7.7E-20 159.0 10.2 162 175-344 2-183 (184)
99 PRK14701 reverse gyrase; Provi 99.6 1.3E-13 2.7E-18 186.8 25.2 132 174-318 77-213 (1638)
100 KOG0346 RNA helicase [RNA proc 99.6 1.3E-13 2.9E-18 157.5 21.3 316 180-621 45-410 (569)
101 PRK09694 helicase Cas3; Provis 99.6 5.9E-13 1.3E-17 171.5 29.3 341 174-609 284-665 (878)
102 PRK13104 secA preprotein trans 99.6 5E-13 1.1E-17 168.9 28.0 387 174-615 80-583 (896)
103 PRK11664 ATP-dependent RNA hel 99.6 3.4E-13 7.3E-18 174.0 26.8 110 508-623 211-341 (812)
104 PRK12906 secA preprotein trans 99.6 5.3E-13 1.2E-17 168.0 26.5 118 492-614 423-548 (796)
105 PRK12904 preprotein translocas 99.5 8E-13 1.7E-17 167.0 27.6 389 174-615 79-569 (830)
106 TIGR00595 priA primosomal prot 99.5 1.2E-12 2.7E-17 161.5 28.8 95 522-619 271-381 (505)
107 COG1197 Mfd Transcription-repa 99.5 8.2E-12 1.8E-16 159.6 31.1 321 175-636 593-925 (1139)
108 COG4098 comFA Superfamily II D 99.5 2.3E-11 5.1E-16 136.0 30.4 312 174-620 95-415 (441)
109 COG1202 Superfamily II helicas 99.5 9.1E-13 2E-17 154.6 18.2 314 175-621 215-553 (830)
110 KOG0327 Translation initiation 99.5 1.3E-12 2.9E-17 148.6 19.0 320 176-630 48-377 (397)
111 PRK13107 preprotein translocas 99.5 2.5E-12 5.4E-17 162.2 23.2 120 491-615 431-587 (908)
112 smart00487 DEXDc DEAD-like hel 99.5 6.7E-13 1.5E-17 141.8 15.1 157 174-345 6-172 (201)
113 KOG0351 ATP-dependent DNA heli 99.5 3E-12 6.5E-17 164.5 22.6 314 175-618 263-591 (941)
114 TIGR00631 uvrb excinuclease AB 99.4 4.9E-11 1.1E-15 150.9 32.5 134 491-630 424-564 (655)
115 PF00271 Helicase_C: Helicase 99.4 2.3E-13 5E-18 125.6 8.2 78 527-607 1-78 (78)
116 COG4889 Predicted helicase [Ge 99.4 1.3E-12 2.8E-17 158.1 16.4 164 174-343 159-350 (1518)
117 cd00046 DEXDc DEAD-like helica 99.4 2.7E-12 5.9E-17 129.0 14.7 137 196-343 1-144 (144)
118 PF11496 HDA2-3: Class II hist 99.4 5.7E-12 1.2E-16 144.8 16.9 219 411-634 4-258 (297)
119 PRK05298 excinuclease ABC subu 99.4 3.6E-10 7.9E-15 143.9 34.8 125 491-621 428-557 (652)
120 PRK12900 secA preprotein trans 99.4 5.4E-11 1.2E-15 150.7 26.2 117 491-612 580-704 (1025)
121 KOG0337 ATP-dependent RNA heli 99.4 3.6E-12 7.7E-17 145.5 12.0 315 176-621 43-368 (529)
122 PRK12899 secA preprotein trans 99.4 2E-10 4.3E-15 145.4 28.8 119 491-615 550-677 (970)
123 TIGR01967 DEAH_box_HrpA ATP-de 99.3 7.2E-11 1.6E-15 155.9 25.3 109 508-624 278-407 (1283)
124 PRK11131 ATP-dependent RNA hel 99.3 1.3E-10 2.8E-15 153.0 26.1 109 508-624 285-414 (1294)
125 smart00490 HELICc helicase sup 99.3 5.3E-12 1.2E-16 116.2 8.8 81 524-607 2-82 (82)
126 PRK12326 preprotein translocas 99.3 7E-10 1.5E-14 137.4 29.8 390 174-615 76-543 (764)
127 COG1203 CRISPR-associated heli 99.3 1.5E-10 3.3E-15 149.3 24.5 353 175-637 194-568 (733)
128 PF00270 DEAD: DEAD/DEAH box h 99.2 1.4E-10 3E-15 122.4 14.8 157 178-349 1-167 (169)
129 KOG0952 DNA/RNA helicase MER3/ 99.2 8.1E-10 1.7E-14 138.0 23.2 312 191-624 122-494 (1230)
130 KOG0353 ATP-dependent DNA heli 99.2 1E-09 2.2E-14 123.2 21.6 316 175-618 93-466 (695)
131 cd00268 DEADc DEAD-box helicas 99.2 2.7E-10 5.8E-15 124.5 16.9 155 176-344 21-185 (203)
132 KOG0352 ATP-dependent DNA heli 99.2 3.6E-09 7.7E-14 121.1 24.7 320 178-616 22-359 (641)
133 KOG0951 RNA helicase BRR2, DEA 99.1 2.8E-09 6.1E-14 134.5 22.8 73 533-609 607-690 (1674)
134 TIGR01407 dinG_rel DnaQ family 99.0 4.2E-08 9.1E-13 129.3 29.4 86 173-261 242-333 (850)
135 PRK13103 secA preprotein trans 99.0 1.6E-08 3.4E-13 128.5 24.2 121 490-615 430-587 (913)
136 PRK12903 secA preprotein trans 99.0 5.8E-08 1.3E-12 122.2 27.6 120 491-615 408-535 (925)
137 COG0556 UvrB Helicase subunit 98.9 3.6E-07 7.9E-12 108.2 28.1 133 497-633 431-571 (663)
138 KOG0947 Cytoplasmic exosomal R 98.9 4.1E-08 8.9E-13 121.8 18.7 367 174-620 295-722 (1248)
139 TIGR00596 rad1 DNA repair prot 98.8 2.3E-08 5E-13 128.5 14.2 142 490-634 267-527 (814)
140 KOG0329 ATP-dependent RNA heli 98.8 1.8E-07 3.9E-12 101.2 17.1 124 178-317 66-197 (387)
141 PF06461 DUF1086: Domain of Un 98.8 1.7E-08 3.7E-13 101.3 8.4 115 796-925 22-141 (145)
142 COG1110 Reverse gyrase [DNA re 98.8 1.4E-06 3E-11 110.0 26.3 130 174-317 80-215 (1187)
143 PF13872 AAA_34: P-loop contai 98.7 1.4E-07 3E-12 107.2 15.7 237 172-429 33-302 (303)
144 PF00385 Chromo: Chromo (CHRro 98.7 6E-09 1.3E-13 89.9 3.7 53 86-140 2-55 (55)
145 CHL00122 secA preprotein trans 98.7 1.2E-06 2.7E-11 111.2 23.7 83 492-578 407-490 (870)
146 COG4581 Superfamily II RNA hel 98.6 1.4E-06 2.9E-11 112.8 20.9 145 173-343 116-270 (1041)
147 COG1198 PriA Primosomal protei 98.5 4.5E-06 9.8E-11 105.8 20.9 374 175-620 197-604 (730)
148 TIGR00604 rad3 DNA repair heli 98.5 1.3E-05 2.9E-10 104.0 25.8 77 171-248 5-83 (705)
149 PRK12902 secA preprotein trans 98.5 1.2E-05 2.7E-10 102.2 24.2 84 491-578 421-505 (939)
150 COG0610 Type I site-specific r 98.5 1.7E-05 3.7E-10 105.2 26.6 139 194-347 272-417 (962)
151 PRK07246 bifunctional ATP-depe 98.5 1.5E-05 3.2E-10 104.5 25.0 85 500-590 638-724 (820)
152 PRK12901 secA preprotein trans 98.4 2.3E-05 4.9E-10 100.8 24.1 120 491-615 610-737 (1112)
153 PRK08074 bifunctional ATP-depe 98.4 0.00012 2.5E-09 97.8 31.9 87 173-261 254-346 (928)
154 KOG0948 Nuclear exosomal RNA h 98.4 3.9E-06 8.3E-11 102.5 15.2 140 175-343 128-276 (1041)
155 KOG0949 Predicted helicase, DE 98.4 2.8E-05 6.1E-10 97.5 22.6 161 178-356 513-682 (1330)
156 TIGR03117 cas_csf4 CRISPR-asso 98.3 0.00024 5.1E-09 89.9 29.2 78 181-260 2-86 (636)
157 COG1199 DinG Rad3-related DNA 98.2 0.00022 4.8E-09 92.2 26.9 104 505-613 475-611 (654)
158 KOG1513 Nuclear helicase MOP-3 98.2 4.7E-05 1E-09 93.4 18.8 250 169-438 258-545 (1300)
159 KOG0349 Putative DEAD-box RNA 98.2 3.1E-06 6.7E-11 97.4 8.4 97 508-607 504-603 (725)
160 PRK15483 type III restriction- 98.2 1.6E-05 3.5E-10 102.9 15.5 144 196-344 60-239 (986)
161 KOG0924 mRNA splicing factor A 98.2 8.3E-05 1.8E-09 90.3 20.2 94 533-629 597-705 (1042)
162 cd00024 CHROMO Chromatin organ 98.2 1.5E-06 3.2E-11 74.8 4.2 51 86-139 4-54 (55)
163 KOG0920 ATP-dependent RNA heli 98.2 0.00017 3.7E-09 92.9 23.9 128 494-627 396-550 (924)
164 KOG0950 DNA polymerase theta/e 98.1 0.00016 3.4E-09 91.7 21.0 152 176-346 223-390 (1008)
165 PF02399 Herpes_ori_bp: Origin 98.1 0.00011 2.5E-09 92.8 19.6 114 492-616 266-385 (824)
166 PF07652 Flavi_DEAD: Flaviviru 98.1 1.3E-05 2.8E-10 82.0 9.2 130 193-343 2-136 (148)
167 cd00024 CHROMO Chromatin organ 98.1 2.1E-06 4.6E-11 73.8 3.0 47 2-50 6-54 (55)
168 KOG0922 DEAH-box RNA helicase 98.1 0.00041 8.9E-09 85.4 22.7 108 511-623 260-392 (674)
169 COG1643 HrpA HrpA-like helicas 98.0 0.00035 7.6E-09 90.4 22.3 111 509-624 259-390 (845)
170 PF00385 Chromo: Chromo (CHRro 98.0 1.7E-06 3.8E-11 74.6 0.6 47 3-50 5-54 (55)
171 smart00298 CHROMO Chromatin or 97.9 1E-05 2.2E-10 69.4 4.5 50 87-140 4-53 (55)
172 smart00489 DEXDc3 DEAD-like he 97.8 0.00018 3.8E-09 83.6 14.0 74 175-248 7-84 (289)
173 smart00488 DEXDc2 DEAD-like he 97.8 0.00018 3.8E-09 83.6 14.0 74 175-248 7-84 (289)
174 PRK11747 dinG ATP-dependent DN 97.8 0.0042 9.1E-08 80.7 27.6 88 500-591 525-616 (697)
175 smart00298 CHROMO Chromatin or 97.8 1.8E-05 3.9E-10 67.9 3.5 48 2-51 5-53 (55)
176 COG0653 SecA Preprotein transl 97.7 0.005 1.1E-07 78.9 25.3 114 491-609 411-535 (822)
177 KOG0926 DEAH-box RNA helicase 97.7 0.0002 4.4E-09 88.4 11.9 77 539-621 610-704 (1172)
178 PF13871 Helicase_C_4: Helicas 97.7 9.1E-05 2E-09 84.3 8.1 90 550-642 52-149 (278)
179 PF13086 AAA_11: AAA domain; P 97.6 0.0003 6.5E-09 77.8 11.0 68 176-247 1-75 (236)
180 KOG0953 Mitochondrial RNA heli 97.6 0.00026 5.6E-09 84.9 10.6 113 493-609 340-464 (700)
181 TIGR02562 cas3_yersinia CRISPR 97.6 0.013 2.7E-07 76.8 25.5 47 561-610 837-883 (1110)
182 KOG0923 mRNA splicing factor A 97.5 0.0025 5.5E-08 78.0 17.7 83 534-624 507-609 (902)
183 KOG2748 Uncharacterized conser 97.5 2.4E-05 5.2E-10 88.5 0.7 43 8-53 20-62 (369)
184 KOG0925 mRNA splicing factor A 97.5 0.0025 5.5E-08 75.5 16.4 63 563-627 314-393 (699)
185 PRK14873 primosome assembly pr 97.4 0.0033 7.2E-08 80.6 18.0 126 204-343 169-303 (665)
186 PF07517 SecA_DEAD: SecA DEAD- 97.1 0.0099 2.1E-07 68.0 15.7 123 174-318 75-210 (266)
187 PF08074 CHDCT2: CHDCT2 (NUC03 97.1 0.00025 5.5E-09 72.7 2.2 63 937-1001 4-67 (173)
188 COG3587 Restriction endonuclea 96.8 0.0058 1.3E-07 77.1 10.6 137 194-343 73-242 (985)
189 PRK10536 hypothetical protein; 96.7 0.0057 1.2E-07 69.2 8.8 148 176-347 59-216 (262)
190 PF02562 PhoH: PhoH-like prote 96.5 0.013 2.9E-07 64.4 9.9 146 177-348 5-160 (205)
191 KOG4150 Predicted ATP-dependen 96.4 0.011 2.3E-07 71.2 8.8 133 491-628 507-647 (1034)
192 PF13401 AAA_22: AAA domain; P 96.3 0.01 2.2E-07 59.9 7.0 116 194-343 3-125 (131)
193 PF13604 AAA_30: AAA domain; P 96.2 0.033 7.2E-07 61.1 11.0 130 176-345 1-132 (196)
194 KOG1802 RNA helicase nonsense 96.1 0.017 3.6E-07 71.0 8.7 77 175-259 409-486 (935)
195 PF12340 DUF3638: Protein of u 96.1 0.012 2.6E-07 65.4 7.0 74 174-250 21-94 (229)
196 PF09848 DUF2075: Uncharacteri 95.9 0.029 6.2E-07 67.3 9.5 48 198-246 4-52 (352)
197 TIGR00376 DNA helicase, putati 95.8 0.068 1.5E-06 68.8 13.0 74 175-256 156-230 (637)
198 cd00009 AAA The AAA+ (ATPases 95.7 0.1 2.2E-06 52.5 11.5 43 195-240 19-61 (151)
199 KOG1803 DNA helicase [Replicat 95.3 0.094 2E-06 64.7 11.0 64 175-244 184-248 (649)
200 COG0553 HepA Superfamily II DN 95.3 0.011 2.4E-07 78.8 3.4 180 175-365 83-289 (866)
201 PF13307 Helicase_C_2: Helicas 95.2 0.034 7.4E-07 59.4 6.4 79 506-591 6-92 (167)
202 KOG2748 Uncharacterized conser 95.2 0.0092 2E-07 68.2 2.0 54 86-145 12-65 (369)
203 KOG1911 Heterochromatin-associ 95.2 0.012 2.7E-07 67.7 3.1 56 84-144 48-103 (270)
204 KOG1132 Helicase of the DEAD s 95.2 0.087 1.9E-06 67.3 10.5 82 175-256 20-141 (945)
205 TIGR01448 recD_rel helicase, p 95.2 0.15 3.3E-06 66.6 13.3 134 174-345 321-454 (720)
206 KOG1911 Heterochromatin-associ 95.1 0.016 3.5E-07 66.8 3.6 50 1-52 51-100 (270)
207 TIGR01447 recD exodeoxyribonuc 95.0 0.14 3E-06 65.3 11.8 139 179-345 148-297 (586)
208 PRK10875 recD exonuclease V su 94.8 0.21 4.5E-06 63.9 12.7 141 177-345 153-303 (615)
209 smart00717 SANT SANT SWI3, AD 94.4 0.082 1.8E-06 43.4 5.2 30 937-966 2-31 (49)
210 PF00249 Myb_DNA-binding: Myb- 94.2 0.046 1E-06 45.8 3.2 30 938-967 3-32 (48)
211 PRK04296 thymidine kinase; Pro 94.1 0.14 3.1E-06 55.9 7.8 34 198-234 5-38 (190)
212 TIGR02881 spore_V_K stage V sp 94.0 0.19 4.2E-06 57.6 9.1 27 196-222 43-69 (261)
213 cd00167 SANT 'SWI3, ADA2, N-Co 93.8 0.11 2.3E-06 42.0 4.7 29 938-966 1-29 (45)
214 KOG0951 RNA helicase BRR2, DEA 93.6 0.074 1.6E-06 69.8 5.0 111 192-323 1156-1271(1674)
215 COG1875 NYN ribonuclease and A 93.0 0.12 2.5E-06 60.6 5.0 150 173-345 224-389 (436)
216 PRK14956 DNA polymerase III su 92.8 0.48 1E-05 58.5 10.2 24 198-221 43-66 (484)
217 smart00382 AAA ATPases associa 92.7 0.32 7E-06 48.2 7.3 43 195-240 2-44 (148)
218 PRK07003 DNA polymerase III su 92.7 0.56 1.2E-05 60.5 10.8 41 181-221 21-64 (830)
219 PRK09112 DNA polymerase III su 92.7 0.39 8.4E-06 57.5 9.0 41 181-221 28-71 (351)
220 TIGR02880 cbbX_cfxQ probable R 92.5 0.34 7.3E-06 56.4 8.0 40 195-234 58-98 (284)
221 KOG1133 Helicase of the DEAD s 92.4 3.2 7E-05 52.4 16.3 81 511-592 631-721 (821)
222 PRK12323 DNA polymerase III su 92.3 0.7 1.5E-05 58.8 10.9 42 180-221 23-64 (700)
223 KOG1805 DNA replication helica 92.0 0.46 1E-05 61.5 8.8 154 176-345 669-831 (1100)
224 PRK14949 DNA polymerase III su 91.9 0.69 1.5E-05 60.7 10.5 42 181-222 21-65 (944)
225 CHL00181 cbbX CbbX; Provisiona 91.9 0.48 1E-05 55.2 8.3 42 195-236 59-101 (287)
226 PLN03025 replication factor C 91.8 0.81 1.8E-05 54.1 10.2 49 305-353 99-148 (319)
227 PRK12723 flagellar biosynthesi 91.6 1.8 3.9E-05 52.5 13.0 131 196-359 175-313 (388)
228 KOG0457 Histone acetyltransfer 91.4 0.25 5.3E-06 58.8 5.1 31 937-967 73-103 (438)
229 PRK12402 replication factor C 91.3 0.64 1.4E-05 55.0 8.7 38 184-221 23-62 (337)
230 PRK06526 transposase; Provisio 90.7 0.75 1.6E-05 52.7 8.1 53 183-246 90-142 (254)
231 PRK07764 DNA polymerase III su 90.3 1.3 2.7E-05 58.8 10.7 25 197-221 39-63 (824)
232 TIGR03420 DnaA_homol_Hda DnaA 90.0 1.9 4.2E-05 47.8 10.6 44 194-241 37-80 (226)
233 PRK07994 DNA polymerase III su 89.5 1.6 3.5E-05 56.2 10.5 42 181-222 21-65 (647)
234 PF13177 DNA_pol3_delta2: DNA 89.2 2.4 5.2E-05 45.1 10.0 134 181-348 2-146 (162)
235 PRK08181 transposase; Validate 88.8 5.6 0.00012 46.0 13.4 47 176-222 87-133 (269)
236 PRK14960 DNA polymerase III su 88.8 2.9 6.4E-05 53.6 11.8 25 197-221 39-63 (702)
237 PF05621 TniB: Bacterial TniB 88.5 3.1 6.6E-05 48.5 10.9 46 298-343 138-189 (302)
238 TIGR03015 pepcterm_ATPase puta 88.2 3.1 6.6E-05 47.5 10.8 43 177-219 24-67 (269)
239 TIGR02768 TraA_Ti Ti-type conj 88.0 3.3 7.3E-05 54.6 12.2 59 174-238 350-408 (744)
240 PRK14952 DNA polymerase III su 87.9 3.3 7.3E-05 52.9 11.7 41 181-221 18-61 (584)
241 PRK08058 DNA polymerase III su 87.8 2.9 6.2E-05 49.8 10.5 130 181-342 11-148 (329)
242 PRK14958 DNA polymerase III su 87.8 3 6.6E-05 52.5 11.2 41 181-221 21-64 (509)
243 PHA02544 44 clamp loader, smal 87.7 3.6 7.8E-05 48.3 11.3 40 305-344 100-141 (316)
244 KOG0384 Chromodomain-helicase 87.4 0.32 6.9E-06 64.2 2.3 34 4-38 291-324 (1373)
245 TIGR02928 orc1/cdc6 family rep 87.2 2.8 6.2E-05 50.2 10.2 46 176-221 18-66 (365)
246 PRK05707 DNA polymerase III su 86.8 2.8 6E-05 49.9 9.6 47 176-222 3-49 (328)
247 PRK08451 DNA polymerase III su 86.7 3.1 6.8E-05 52.5 10.3 24 198-221 39-62 (535)
248 PF06862 DUF1253: Protein of u 86.7 7.3 0.00016 47.9 13.1 121 499-621 288-415 (442)
249 PRK14961 DNA polymerase III su 86.6 3.3 7.2E-05 49.9 10.3 40 181-220 21-63 (363)
250 PRK14957 DNA polymerase III su 86.5 3.3 7.1E-05 52.5 10.4 41 181-221 21-64 (546)
251 PRK14962 DNA polymerase III su 86.4 3.5 7.6E-05 51.5 10.6 43 179-221 20-62 (472)
252 smart00491 HELICc2 helicase su 86.4 2.5 5.3E-05 44.1 7.8 54 537-591 23-80 (142)
253 PRK07471 DNA polymerase III su 86.3 3.8 8.1E-05 49.5 10.4 43 181-223 24-69 (365)
254 COG3421 Uncharacterized protei 86.1 0.91 2E-05 56.1 5.0 107 202-317 4-124 (812)
255 PRK08084 DNA replication initi 86.1 5.2 0.00011 45.2 11.0 28 194-221 44-71 (235)
256 PF13921 Myb_DNA-bind_6: Myb-l 86.1 0.62 1.3E-05 40.8 2.8 26 939-965 1-26 (60)
257 smart00492 HELICc3 helicase su 86.0 3.6 7.9E-05 42.8 8.9 52 537-591 26-79 (141)
258 PHA03333 putative ATPase subun 85.8 6 0.00013 50.7 12.0 150 177-344 170-332 (752)
259 PRK05703 flhF flagellar biosyn 85.7 5.8 0.00013 48.9 11.8 56 305-360 299-359 (424)
260 PHA02533 17 large terminase pr 85.7 4.2 9.2E-05 51.5 10.9 56 175-235 58-113 (534)
261 PRK07940 DNA polymerase III su 85.7 4.1 9E-05 49.7 10.4 25 197-221 38-62 (394)
262 PF06733 DEAD_2: DEAD_2; Inte 85.3 0.71 1.5E-05 49.5 3.3 38 282-319 118-159 (174)
263 PRK14955 DNA polymerase III su 85.2 5.8 0.00013 48.5 11.6 41 181-221 21-64 (397)
264 PRK06645 DNA polymerase III su 84.9 4 8.7E-05 51.3 10.1 41 181-221 26-69 (507)
265 PF13245 AAA_19: Part of AAA d 84.8 2.8 6E-05 38.9 6.5 44 195-238 10-54 (76)
266 PRK14964 DNA polymerase III su 84.7 4.5 9.7E-05 50.6 10.3 39 183-221 20-61 (491)
267 PRK08116 hypothetical protein; 84.4 7.9 0.00017 44.8 11.5 44 195-241 114-157 (268)
268 KOG2340 Uncharacterized conser 84.2 11 0.00024 46.5 12.6 122 497-620 539-667 (698)
269 KOG1131 RNA polymerase II tran 84.2 4.5 9.7E-05 49.6 9.4 71 165-235 5-75 (755)
270 TIGR00678 holB DNA polymerase 84.1 6.4 0.00014 42.6 10.1 26 197-222 16-41 (188)
271 PRK14974 cell division protein 84.1 7.9 0.00017 46.2 11.6 35 197-234 142-176 (336)
272 cd01120 RecA-like_NTPases RecA 84.0 11 0.00024 38.6 11.6 36 198-236 2-37 (165)
273 PRK11889 flhF flagellar biosyn 83.7 11 0.00024 45.8 12.5 26 196-221 242-267 (436)
274 PRK08691 DNA polymerase III su 83.6 9.7 0.00021 49.4 12.7 25 197-221 40-64 (709)
275 PF05876 Terminase_GpA: Phage 83.4 1.2 2.6E-05 56.7 4.7 163 175-354 15-190 (557)
276 PRK09111 DNA polymerase III su 83.2 4.8 0.0001 51.7 9.9 42 181-222 29-73 (598)
277 PF13173 AAA_14: AAA domain 83.2 6.1 0.00013 40.0 8.9 39 305-344 61-99 (128)
278 PRK08769 DNA polymerase III su 82.7 7.9 0.00017 45.9 10.8 47 176-222 4-53 (319)
279 TIGR00595 priA primosomal prot 82.7 6.2 0.00013 49.8 10.5 96 490-589 6-102 (505)
280 PF00004 AAA: ATPase family as 82.7 4.5 9.8E-05 40.3 7.7 36 198-239 1-36 (132)
281 PRK13889 conjugal transfer rel 82.6 8 0.00017 52.3 12.0 59 174-238 344-402 (988)
282 PRK14969 DNA polymerase III su 82.6 4.8 0.0001 51.0 9.6 25 197-221 40-64 (527)
283 PRK14963 DNA polymerase III su 82.6 6.6 0.00014 49.5 10.7 41 181-221 19-62 (504)
284 PRK06921 hypothetical protein; 82.5 11 0.00024 43.5 11.7 29 194-222 116-144 (266)
285 PRK00440 rfc replication facto 82.3 9.3 0.0002 44.7 11.4 24 197-220 40-63 (319)
286 cd01121 Sms Sms (bacterial rad 82.2 8.9 0.00019 46.5 11.2 61 182-245 68-129 (372)
287 PF00249 Myb_DNA-binding: Myb- 81.9 4.9 0.00011 33.6 6.3 30 817-847 3-32 (48)
288 PRK05580 primosome assembly pr 80.4 9.1 0.0002 50.1 11.2 95 491-589 172-267 (679)
289 PF00448 SRP54: SRP54-type pro 80.3 9.4 0.0002 42.0 9.7 131 198-358 4-140 (196)
290 PRK05563 DNA polymerase III su 80.3 9.8 0.00021 48.7 11.2 25 197-221 40-64 (559)
291 PTZ00112 origin recognition co 80.2 16 0.00034 48.4 12.7 46 176-221 758-807 (1164)
292 PRK06647 DNA polymerase III su 80.2 8.6 0.00019 49.2 10.6 25 197-221 40-64 (563)
293 PRK08903 DnaA regulatory inact 80.1 11 0.00025 41.9 10.5 50 181-233 28-77 (227)
294 PRK04195 replication factor C 80.1 11 0.00024 47.4 11.4 45 175-219 16-63 (482)
295 PRK14959 DNA polymerase III su 80.0 9 0.0002 49.2 10.6 25 197-221 40-64 (624)
296 PRK14965 DNA polymerase III su 79.7 13 0.00029 47.7 12.1 25 198-222 41-65 (576)
297 PRK14953 DNA polymerase III su 79.7 9.3 0.0002 48.0 10.5 40 181-220 21-63 (486)
298 TIGR01557 myb_SHAQKYF myb-like 79.4 2.3 5E-05 37.3 3.6 28 937-964 4-34 (57)
299 PRK14948 DNA polymerase III su 79.3 7.4 0.00016 50.3 9.7 41 181-221 21-64 (620)
300 TIGR03345 VI_ClpV1 type VI sec 79.2 9.1 0.0002 51.4 10.8 41 181-221 192-234 (852)
301 PRK06871 DNA polymerase III su 79.1 11 0.00024 44.7 10.4 46 177-222 3-51 (325)
302 PRK14951 DNA polymerase III su 78.8 10 0.00022 48.9 10.6 41 181-221 21-64 (618)
303 PRK00411 cdc6 cell division co 78.7 21 0.00045 43.3 13.1 46 177-222 34-82 (394)
304 PF00580 UvrD-helicase: UvrD/R 78.5 4.6 0.0001 46.8 7.0 56 177-238 1-57 (315)
305 PRK05896 DNA polymerase III su 78.4 11 0.00024 48.2 10.7 39 183-221 23-64 (605)
306 PRK08727 hypothetical protein; 78.0 11 0.00023 42.6 9.5 25 197-221 43-67 (233)
307 COG0470 HolB ATPase involved i 77.9 12 0.00026 43.8 10.3 29 195-223 23-52 (325)
308 PRK06090 DNA polymerase III su 76.9 16 0.00035 43.3 10.9 48 176-223 3-53 (319)
309 TIGR00362 DnaA chromosomal rep 76.9 21 0.00045 43.8 12.3 26 197-222 138-163 (405)
310 PRK00149 dnaA chromosomal repl 76.8 22 0.00049 44.2 12.7 27 196-222 149-175 (450)
311 PRK14954 DNA polymerase III su 76.7 12 0.00026 48.3 10.5 41 181-221 21-64 (620)
312 PLN03212 Transcription repress 76.6 2.8 6.2E-05 47.0 4.2 47 917-965 8-54 (249)
313 PRK07133 DNA polymerase III su 76.4 20 0.00044 46.8 12.3 24 198-221 43-66 (725)
314 PRK13342 recombination factor 76.3 14 0.0003 45.4 10.6 22 196-217 37-58 (413)
315 PRK09183 transposase/IS protei 76.0 18 0.00039 41.6 10.7 37 181-221 92-128 (259)
316 KOG0049 Transcription factor, 75.8 8.3 0.00018 48.1 8.0 131 817-966 255-390 (939)
317 PRK14950 DNA polymerase III su 75.2 19 0.0004 46.5 11.7 40 181-220 21-63 (585)
318 PRK11823 DNA repair protein Ra 74.7 18 0.00039 45.0 11.0 63 182-247 66-129 (446)
319 TIGR02397 dnaX_nterm DNA polym 74.6 21 0.00045 42.6 11.3 25 197-221 38-62 (355)
320 PRK14088 dnaA chromosomal repl 74.5 21 0.00045 44.4 11.4 27 196-222 131-157 (440)
321 PRK00771 signal recognition pa 74.4 22 0.00047 44.1 11.4 26 196-221 96-121 (437)
322 PRK00080 ruvB Holliday junctio 74.4 36 0.00078 40.4 13.2 44 176-219 28-75 (328)
323 PRK06893 DNA replication initi 74.2 22 0.00048 39.9 10.7 26 197-222 41-66 (229)
324 TIGR02639 ClpA ATP-dependent C 74.1 19 0.0004 47.8 11.6 28 194-221 202-229 (731)
325 CHL00095 clpC Clp protease ATP 73.8 17 0.00037 48.7 11.3 43 178-221 184-226 (821)
326 PRK07993 DNA polymerase III su 73.2 16 0.00035 43.6 9.8 47 176-222 2-51 (334)
327 PHA03368 DNA packaging termina 73.0 7.7 0.00017 49.6 7.1 106 197-319 256-366 (738)
328 COG5114 Histone acetyltransfer 72.9 4.4 9.6E-05 46.3 4.6 50 916-967 45-94 (432)
329 PRK14087 dnaA chromosomal repl 72.7 24 0.00051 44.0 11.4 45 196-241 142-186 (450)
330 PRK05642 DNA replication initi 72.7 18 0.0004 40.8 9.6 37 306-342 98-138 (234)
331 COG0464 SpoVK ATPases of the A 72.6 21 0.00046 44.9 11.2 67 176-248 249-323 (494)
332 PRK10917 ATP-dependent DNA hel 72.2 18 0.0004 47.4 10.7 97 491-590 292-393 (681)
333 PRK13826 Dtr system oriT relax 72.2 24 0.00052 48.4 11.9 59 174-238 379-437 (1102)
334 PRK04132 replication factor C 71.8 9.3 0.0002 50.8 7.8 49 305-353 630-679 (846)
335 KOG0048 Transcription factor, 71.7 2.8 6E-05 47.6 2.7 32 938-969 11-42 (238)
336 COG3267 ExeA Type II secretory 71.5 19 0.00042 41.0 9.1 41 194-238 49-90 (269)
337 cd00167 SANT 'SWI3, ADA2, N-Co 71.4 12 0.00027 29.7 5.9 42 817-863 1-42 (45)
338 PRK11054 helD DNA helicase IV; 70.7 9.3 0.0002 50.0 7.5 64 175-244 195-259 (684)
339 PRK12422 chromosomal replicati 70.7 16 0.00035 45.4 9.2 35 196-233 142-176 (445)
340 PRK14722 flhF flagellar biosyn 70.3 38 0.00083 41.1 12.0 28 194-221 136-163 (374)
341 PRK06305 DNA polymerase III su 70.0 31 0.00067 43.0 11.5 41 181-221 22-65 (451)
342 PRK14712 conjugal transfer nic 69.7 25 0.00054 49.8 11.5 62 175-238 834-896 (1623)
343 PF01393 Chromo_shadow: Chromo 69.4 4.7 0.0001 35.5 3.0 49 85-140 3-53 (58)
344 KOG1924 RhoA GTPase effector D 69.2 41 0.00089 43.4 11.9 35 1185-1220 475-509 (1102)
345 PLN03091 hypothetical protein; 69.1 4.9 0.00011 48.6 4.0 29 937-965 15-43 (459)
346 smart00717 SANT SANT SWI3, AD 68.9 14 0.00031 29.8 5.8 43 817-864 3-45 (49)
347 TIGR01074 rep ATP-dependent DN 68.8 22 0.00048 46.5 10.5 66 177-248 2-69 (664)
348 TIGR03346 chaperone_ClpB ATP-d 68.6 22 0.00048 47.9 10.6 40 182-221 179-220 (852)
349 COG0593 DnaA ATPase involved i 68.5 33 0.00072 42.0 11.0 41 305-345 175-221 (408)
350 TIGR01242 26Sp45 26S proteasom 68.1 43 0.00093 40.4 12.0 38 195-238 156-193 (364)
351 PRK10865 protein disaggregatio 68.0 25 0.00053 47.5 10.8 37 184-220 186-224 (857)
352 PRK14086 dnaA chromosomal repl 67.9 41 0.00089 43.3 12.1 99 197-342 316-418 (617)
353 PRK13709 conjugal transfer nic 67.6 30 0.00066 49.6 11.8 63 175-239 966-1029(1747)
354 KOG1133 Helicase of the DEAD s 67.6 9.4 0.0002 48.5 6.2 48 174-221 13-61 (821)
355 KOG0991 Replication factor C, 67.5 10 0.00022 42.4 5.8 25 196-220 49-73 (333)
356 PRK14971 DNA polymerase III su 66.8 56 0.0012 42.4 13.2 40 181-220 22-64 (614)
357 COG1484 DnaC DNA replication p 65.4 31 0.00068 39.6 9.6 66 177-245 87-152 (254)
358 PF00308 Bac_DnaA: Bacterial d 65.4 58 0.0013 36.4 11.6 38 305-342 97-138 (219)
359 PF11717 Tudor-knot: RNA bindi 65.1 2.2 4.7E-05 37.0 0.1 29 8-36 25-53 (55)
360 PHA03372 DNA packaging termina 65.1 12 0.00025 47.5 6.3 110 192-320 200-314 (668)
361 cd01128 rho_factor Transcripti 64.8 27 0.00059 40.0 8.9 24 193-216 14-37 (249)
362 TIGR02640 gas_vesic_GvpN gas v 64.8 16 0.00034 42.0 7.1 50 178-233 4-53 (262)
363 PRK12727 flagellar biosynthesi 64.5 63 0.0014 41.0 12.4 28 194-221 349-376 (559)
364 PRK07399 DNA polymerase III su 64.5 46 0.001 39.4 11.0 42 181-222 9-53 (314)
365 KOG2543 Origin recognition com 63.8 76 0.0017 38.3 12.2 146 174-345 7-160 (438)
366 PRK06964 DNA polymerase III su 63.7 30 0.00065 41.5 9.3 46 177-222 2-48 (342)
367 CHL00095 clpC Clp protease ATP 63.7 2.7E+02 0.0058 37.7 19.2 24 198-221 542-565 (821)
368 cd03115 SRP The signal recogni 63.6 62 0.0013 34.3 11.0 25 198-222 3-27 (173)
369 PF01695 IstB_IS21: IstB-like 63.6 12 0.00026 40.5 5.5 39 193-234 45-83 (178)
370 TIGR01425 SRP54_euk signal rec 63.3 35 0.00076 42.1 9.9 183 490-703 109-310 (429)
371 KOG0952 DNA/RNA helicase MER3/ 62.6 6.6 0.00014 51.9 3.7 111 192-320 940-1061(1230)
372 COG3973 Superfamily I DNA and 62.5 20 0.00043 45.2 7.5 49 194-242 225-276 (747)
373 COG1474 CDC6 Cdc6-related prot 62.4 56 0.0012 39.6 11.4 48 175-222 19-69 (366)
374 TIGR00643 recG ATP-dependent D 62.4 32 0.0007 44.8 10.0 97 491-590 266-367 (630)
375 PRK06731 flhF flagellar biosyn 62.4 90 0.002 36.2 12.6 47 194-243 74-124 (270)
376 PRK14873 primosome assembly pr 62.1 32 0.00069 44.9 9.8 94 491-588 170-265 (665)
377 KOG0740 AAA+-type ATPase [Post 62.1 13 0.00027 45.6 5.8 46 196-247 187-232 (428)
378 PRK05986 cob(I)alamin adenolsy 62.0 77 0.0017 34.9 11.2 142 194-356 21-170 (191)
379 CHL00206 ycf2 Ycf2; Provisiona 61.9 18 0.0004 51.4 7.8 42 194-241 1629-1670(2281)
380 PRK11034 clpA ATP-dependent Cl 61.7 39 0.00084 44.9 10.6 28 194-221 206-233 (758)
381 TIGR00708 cobA cob(I)alamin ad 61.6 22 0.00048 38.4 6.9 57 298-354 90-150 (173)
382 COG2256 MGS1 ATPase related to 61.5 38 0.00082 41.1 9.4 21 196-216 49-69 (436)
383 PRK13341 recombination factor 61.3 37 0.00079 44.9 10.2 23 196-218 53-75 (725)
384 TIGR01243 CDC48 AAA family ATP 61.3 35 0.00077 45.2 10.3 39 194-238 211-249 (733)
385 COG1200 RecG RecG-like helicas 58.9 1E+02 0.0022 40.0 12.9 93 491-586 293-390 (677)
386 TIGR00416 sms DNA repair prote 58.7 61 0.0013 40.5 11.1 63 182-247 80-143 (454)
387 KOG0737 AAA+-type ATPase [Post 58.6 12 0.00026 44.6 4.7 49 194-248 126-174 (386)
388 PF01443 Viral_helicase1: Vira 58.4 18 0.0004 40.1 6.0 40 305-347 62-101 (234)
389 PTZ00293 thymidine kinase; Pro 58.1 27 0.00058 39.0 7.0 35 199-236 8-42 (211)
390 PRK13833 conjugal transfer pro 58.0 20 0.00044 42.6 6.5 136 172-355 124-259 (323)
391 cd00034 ChSh Chromo Shadow Dom 57.9 12 0.00025 32.5 3.3 48 86-140 1-50 (54)
392 PRK05564 DNA polymerase III su 57.8 31 0.00067 40.7 8.1 24 198-221 29-52 (313)
393 PRK07276 DNA polymerase III su 57.6 64 0.0014 37.9 10.3 46 176-222 2-49 (290)
394 CHL00176 ftsH cell division pr 57.4 79 0.0017 41.2 12.1 33 195-233 216-248 (638)
395 cd01124 KaiC KaiC is a circadi 57.3 25 0.00055 37.5 6.7 48 198-248 2-49 (187)
396 PF14061 Mtf2_C: Polycomb-like 56.8 11 0.00024 31.8 2.8 26 86-115 24-49 (50)
397 TIGR03689 pup_AAA proteasome A 56.6 35 0.00076 43.1 8.5 27 194-220 215-241 (512)
398 PRK14970 DNA polymerase III su 56.4 51 0.0011 39.7 9.8 39 182-220 23-64 (367)
399 TIGR00767 rho transcription te 56.4 45 0.00098 40.8 9.0 28 193-220 166-193 (415)
400 PRK06835 DNA replication prote 55.8 54 0.0012 39.2 9.6 49 174-222 158-210 (329)
401 PRK03992 proteasome-activating 55.6 29 0.00063 42.4 7.5 40 195-240 165-204 (389)
402 COG2842 Uncharacterized ATPase 55.2 45 0.00098 38.9 8.4 115 184-344 83-203 (297)
403 PRK07952 DNA replication prote 54.7 90 0.0019 35.7 10.7 62 179-247 79-144 (244)
404 COG1419 FlhF Flagellar GTP-bin 54.5 1.8E+02 0.0039 35.7 13.5 135 195-361 203-341 (407)
405 COG0552 FtsY Signal recognitio 54.2 93 0.002 37.1 10.8 122 199-350 143-276 (340)
406 PRK10416 signal recognition pa 54.0 1E+02 0.0022 36.6 11.5 34 197-233 116-149 (318)
407 cd01122 GP4d_helicase GP4d_hel 54.0 1.1E+02 0.0024 35.0 11.6 56 186-243 21-76 (271)
408 PRK10867 signal recognition pa 54.0 97 0.0021 38.5 11.6 25 198-222 103-127 (433)
409 TIGR02760 TraI_TIGR conjugativ 54.0 59 0.0013 47.8 11.2 62 175-238 1018-1080(1960)
410 TIGR02760 TraI_TIGR conjugativ 53.6 74 0.0016 46.8 12.0 62 172-238 425-486 (1960)
411 COG1198 PriA Primosomal protei 53.4 28 0.00061 45.6 7.1 109 416-571 196-305 (730)
412 COG1435 Tdk Thymidine kinase [ 53.4 49 0.0011 36.4 7.8 34 306-342 83-118 (201)
413 PF03354 Terminase_1: Phage Te 53.3 21 0.00045 44.9 5.9 148 179-343 1-162 (477)
414 TIGR01243 CDC48 AAA family ATP 53.2 33 0.00072 45.5 8.0 41 195-241 487-527 (733)
415 TIGR01425 SRP54_euk signal rec 53.1 1.4E+02 0.003 37.0 12.7 24 198-221 103-126 (429)
416 KOG0738 AAA+-type ATPase [Post 53.0 52 0.0011 39.7 8.5 46 196-248 246-292 (491)
417 COG0541 Ffh Signal recognition 53.0 74 0.0016 39.1 10.0 105 198-331 103-207 (451)
418 PTZ00454 26S protease regulato 52.6 29 0.00062 42.6 6.8 42 194-241 178-219 (398)
419 KOG0780 Signal recognition par 52.4 53 0.0012 39.6 8.4 97 199-323 105-201 (483)
420 PTZ00361 26 proteosome regulat 52.1 61 0.0013 40.3 9.5 40 194-239 216-255 (438)
421 cd00984 DnaB_C DnaB helicase C 52.0 81 0.0018 35.3 10.0 49 185-235 3-51 (242)
422 PRK11034 clpA ATP-dependent Cl 51.5 2E+02 0.0043 38.5 14.5 23 197-219 490-512 (758)
423 PRK10867 signal recognition pa 51.5 51 0.0011 40.8 8.7 68 490-557 109-181 (433)
424 TIGR03346 chaperone_ClpB ATP-d 51.4 2.7E+02 0.0058 37.9 16.1 25 197-221 597-621 (852)
425 PRK13894 conjugal transfer ATP 50.8 32 0.00069 40.9 6.6 44 174-220 130-173 (319)
426 COG4626 Phage terminase-like p 50.5 68 0.0015 40.5 9.5 133 174-329 59-207 (546)
427 COG2255 RuvB Holliday junction 50.4 24 0.00052 40.9 5.1 28 305-332 103-131 (332)
428 PRK10919 ATP-dependent DNA hel 50.3 20 0.00043 47.0 5.2 57 176-238 2-59 (672)
429 TIGR01241 FtsH_fam ATP-depende 50.1 61 0.0013 40.9 9.4 24 195-218 88-111 (495)
430 cd00561 CobA_CobO_BtuR ATP:cor 49.9 1.6E+02 0.0035 31.4 11.0 55 298-352 88-146 (159)
431 TIGR02639 ClpA ATP-dependent C 49.9 2.2E+02 0.0047 38.0 14.7 23 197-219 486-508 (731)
432 PRK08760 replicative DNA helic 49.7 56 0.0012 41.1 8.8 66 182-249 216-281 (476)
433 TIGR00064 ftsY signal recognit 49.4 1.5E+02 0.0033 34.4 11.7 33 198-233 75-107 (272)
434 PRK05748 replicative DNA helic 49.4 50 0.0011 41.1 8.3 62 182-245 190-251 (448)
435 PRK08699 DNA polymerase III su 49.3 74 0.0016 37.9 9.4 45 177-221 2-47 (325)
436 PRK09376 rho transcription ter 49.1 80 0.0017 38.6 9.5 38 183-221 158-195 (416)
437 PRK10865 protein disaggregatio 49.0 7.3E+02 0.016 33.8 19.5 25 197-221 600-624 (857)
438 smart00300 ChSh Chromo Shadow 48.9 13 0.00028 33.1 2.2 48 85-140 7-56 (61)
439 TIGR03499 FlhF flagellar biosy 48.7 53 0.0011 38.3 7.9 28 195-222 194-221 (282)
440 TIGR01075 uvrD DNA helicase II 48.3 49 0.0011 43.8 8.5 57 176-238 4-61 (715)
441 PRK06995 flhF flagellar biosyn 48.1 88 0.0019 39.4 10.0 25 198-222 259-283 (484)
442 PRK12724 flagellar biosynthesi 48.0 1.1E+02 0.0025 37.7 10.7 22 198-219 226-247 (432)
443 PRK09165 replicative DNA helic 48.0 83 0.0018 39.8 10.0 63 184-246 206-280 (497)
444 COG2812 DnaX DNA polymerase II 47.4 31 0.00066 43.5 5.9 42 181-222 21-65 (515)
445 PF05970 PIF1: PIF1-like helic 47.1 43 0.00094 40.5 7.1 60 176-238 1-62 (364)
446 PRK05973 replicative DNA helic 46.6 47 0.001 37.8 6.8 57 187-246 56-112 (237)
447 TIGR00665 DnaB replicative DNA 46.1 93 0.002 38.5 10.0 62 182-245 182-243 (434)
448 KOG1807 Helicases [Replication 46.0 73 0.0016 41.4 8.7 90 176-271 378-471 (1025)
449 PF00437 T2SE: Type II/IV secr 45.9 26 0.00057 40.2 4.8 124 186-355 118-241 (270)
450 TIGR00959 ffh signal recogniti 45.5 1.8E+02 0.0038 36.2 12.0 24 197-220 101-124 (428)
451 PF12846 AAA_10: AAA-like doma 45.3 61 0.0013 37.1 7.8 44 195-241 1-44 (304)
452 PRK11773 uvrD DNA-dependent he 45.0 44 0.00096 44.2 7.3 57 176-238 9-66 (721)
453 TIGR00150 HI0065_YjeE ATPase, 45.0 37 0.00081 35.1 5.2 33 187-219 14-46 (133)
454 PRK06904 replicative DNA helic 45.0 1.9E+02 0.0042 36.3 12.5 63 182-246 208-270 (472)
455 TIGR01547 phage_term_2 phage t 44.6 55 0.0012 39.9 7.6 131 198-345 4-142 (396)
456 cd01129 PulE-GspE PulE/GspE Th 44.1 36 0.00078 39.3 5.5 42 177-220 64-105 (264)
457 COG1066 Sms Predicted ATP-depe 43.3 1E+02 0.0022 37.8 9.0 88 197-319 95-182 (456)
458 cd01130 VirB11-like_ATPase Typ 43.0 35 0.00076 37.0 5.0 44 173-219 6-49 (186)
459 PRK10263 DNA translocase FtsK; 42.9 1E+02 0.0022 42.9 10.0 42 194-235 1009-1051(1355)
460 PRK14721 flhF flagellar biosyn 42.8 1.7E+02 0.0036 36.3 11.2 54 305-359 269-327 (420)
461 PRK05595 replicative DNA helic 42.7 67 0.0014 40.0 8.0 62 182-245 188-249 (444)
462 PRK12726 flagellar biosynthesi 42.4 1.6E+02 0.0034 36.1 10.5 27 195-221 206-232 (407)
463 PF06745 KaiC: KaiC; InterPro 42.2 57 0.0012 36.3 6.7 53 194-248 18-70 (226)
464 TIGR00959 ffh signal recogniti 40.6 1.3E+02 0.0029 37.2 9.9 66 491-556 109-179 (428)
465 TIGR00580 mfd transcription-re 40.2 1.1E+02 0.0025 41.6 10.0 96 491-589 482-582 (926)
466 TIGR02782 TrbB_P P-type conjug 40.2 39 0.00084 39.8 5.1 44 175-221 115-158 (299)
467 PRK12377 putative replication 40.2 1.5E+02 0.0032 34.1 9.5 44 195-241 101-144 (248)
468 TIGR02012 tigrfam_recA protein 40.1 1.4E+02 0.0031 35.6 9.7 55 183-240 41-97 (321)
469 KOG0739 AAA+-type ATPase [Post 40.0 92 0.002 36.4 7.6 47 196-248 167-213 (439)
470 PHA00350 putative assembly pro 39.6 60 0.0013 39.7 6.6 17 199-215 5-21 (399)
471 COG0003 ArsA Predicted ATPase 39.4 45 0.00097 39.7 5.4 27 203-231 10-36 (322)
472 PF13481 AAA_25: AAA domain; P 39.1 35 0.00076 36.7 4.3 64 186-249 22-93 (193)
473 TIGR03600 phage_DnaB phage rep 39.1 1.2E+02 0.0026 37.3 9.4 57 183-241 182-238 (421)
474 PF00158 Sigma54_activat: Sigm 38.4 1.1E+02 0.0025 32.7 7.9 51 187-241 14-65 (168)
475 PLN03212 Transcription repress 38.4 76 0.0016 36.1 6.6 49 937-1006 79-129 (249)
476 TIGR03881 KaiC_arch_4 KaiC dom 37.8 90 0.002 34.7 7.4 56 183-241 7-63 (229)
477 PRK08006 replicative DNA helic 37.5 1.2E+02 0.0026 38.1 9.0 61 183-245 212-272 (471)
478 TIGR03877 thermo_KaiC_1 KaiC d 36.7 91 0.002 35.2 7.2 62 183-247 8-70 (237)
479 cd02037 MRP-like MRP (Multiple 36.4 2.5E+02 0.0054 29.6 10.2 53 304-360 66-118 (169)
480 PHA00012 I assembly protein 36.4 57 0.0012 38.8 5.5 23 199-221 5-27 (361)
481 TIGR02785 addA_Gpos recombinat 35.8 85 0.0018 44.3 8.1 120 177-316 2-126 (1232)
482 PRK10689 transcription-repair 35.8 1.5E+02 0.0033 41.3 10.3 95 491-588 631-730 (1147)
483 PF06564 YhjQ: YhjQ protein; 35.6 1E+02 0.0023 35.2 7.4 35 201-238 8-44 (243)
484 PF01580 FtsK_SpoIIIE: FtsK/Sp 35.6 57 0.0012 35.7 5.2 43 194-236 37-79 (205)
485 PRK10923 glnG nitrogen regulat 34.9 2.2E+02 0.0048 35.4 10.9 42 193-237 159-200 (469)
486 PRK06321 replicative DNA helic 34.5 1.3E+02 0.0029 37.8 8.7 61 183-245 214-274 (472)
487 PF05127 Helicase_RecD: Helica 34.4 24 0.00051 38.3 1.9 33 305-343 90-123 (177)
488 CHL00195 ycf46 Ycf46; Provisio 34.3 59 0.0013 41.0 5.6 39 194-238 258-296 (489)
489 PRK08533 flagellar accessory p 33.8 1.1E+02 0.0023 34.6 7.1 50 193-245 22-71 (230)
490 COG1444 Predicted P-loop ATPas 33.7 2E+02 0.0043 38.1 10.2 59 176-235 211-270 (758)
491 TIGR00682 lpxK tetraacyldisacc 33.6 1.2E+02 0.0026 36.0 7.7 19 204-222 39-57 (311)
492 PRK08939 primosomal protein Dn 33.5 1.3E+02 0.0028 35.7 8.0 29 194-222 155-183 (306)
493 PRK13900 type IV secretion sys 33.4 54 0.0012 39.2 4.9 35 185-219 150-184 (332)
494 PRK14723 flhF flagellar biosyn 33.3 2.3E+02 0.005 37.8 10.7 23 198-220 188-210 (767)
495 COG3972 Superfamily I DNA and 33.3 3.2E+02 0.007 34.3 11.1 36 204-240 185-220 (660)
496 cd00983 recA RecA is a bacter 32.5 1.9E+02 0.0042 34.5 9.2 54 183-239 41-96 (325)
497 TIGR02688 conserved hypothetic 32.5 1.3E+02 0.0028 37.3 7.8 58 180-243 194-252 (449)
498 KOG0442 Structure-specific end 32.4 2.6E+02 0.0057 37.1 10.7 43 489-531 348-400 (892)
499 PRK13531 regulatory ATPase Rav 32.3 60 0.0013 40.7 5.1 38 182-219 26-63 (498)
500 PF06068 TIP49: TIP49 C-termin 32.2 89 0.0019 37.8 6.3 54 181-238 32-89 (398)
No 1
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=4.2e-219 Score=1980.21 Aligned_cols=1106 Identities=47% Similarity=0.748 Sum_probs=906.2
Q ss_pred CCCCCCCCcceEEEEecCCccccccccchhhhh--cccchHHHHHHHhhhhHhhhhhccCChhHHhhhhhhhhhhhHHhh
Q 000684 5 FDSEPDWNEMEFLIKWKGQSHLHCQWKSFAELQ--NLSGFKKVLNYAKKVVEDVRFRKMVSREEIELNDVSKEMDLDIIK 82 (1352)
Q Consensus 5 ~d~~~~~~~~eyLVKWkg~SylH~tW~s~~~L~--~~~g~kk~~n~~kk~~~~~~~~~~~~~ed~e~~~~~~e~~~~~~~ 82 (1352)
|+..+.++++||||||+|+||+||||+|+++|. .++|++||+||+|+..+..++.. +|++.++++
T Consensus 217 ~~~~~~~e~~qFlIKWkg~SyLHctWet~~~L~~~~~rG~kKv~nf~kK~~e~~~~~r-------------~E~~~~~~~ 283 (1373)
T KOG0384|consen 217 FEEKKTEEEEQFLIKWKGWSYLHCTWETESELLEMNVRGLKKVDNFKKKVIEEDRWRR-------------QEREEDLNK 283 (1373)
T ss_pred ccccCcchhhhhheeeccccceeccccchHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-------------hhhhhhhhh
Confidence 444444788999999999999999999999986 89999999999999876555433 678889999
Q ss_pred hcCcccceeeeeccCCCCCCcceeEEEecCCCCcccccccccccch-hHHHHHHHHHHHHHHHhhhcchhhhhhhhcccc
Q 000684 83 QNSQVERIIADRISKDSSGNVTQEYLVKWKGLSYAEATWEKDEIID-FAQDAIDEYKAREAAMAEQGKMVDLQRKKGKAS 161 (1352)
Q Consensus 83 ~~~~veRIi~~r~~~~~~~~~~~~YLVKW~gL~Y~~~TWE~~~~i~-~~~~~i~~y~~r~~~~~~~~~~~~~~r~~~~~~ 161 (1352)
+|.+|||||++...++ ++|||||+||||++||||++.+|. .++.+|+.|..|+.+...+...+... ..++.
T Consensus 284 dy~~VdRIia~~~~~d------~eYLvKW~~LpY~e~TWE~~~~I~~~~~~~~~~~~~Re~sk~~p~~~~~~~--~~rp~ 355 (1373)
T KOG0384|consen 284 DYVIVDRIIAEQTSKD------PEYLVKWRGLPYEECTWEDAEDIAKKAQEEIEEFQSRENSKTLPNKGCKYR--PQRPR 355 (1373)
T ss_pred hhhhhhhhhhcccCCC------ceeEEEecCCCcccccccchhhhhhhHHHHHHHHhhhhccccCCCCccccC--ccchh
Confidence 9999999999886433 799999999999999999999996 68999999999998776665544321 23457
Q ss_pred ccccccCCCccCCCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHH
Q 000684 162 LRKLDEQPEWLRGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNW 241 (1352)
Q Consensus 162 ~~~~~~~P~~~~~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW 241 (1352)
|.++..||.|+.|.+||+||++|||||+++|+++.|||||||||||||+|+|+||.+|++...+.||||||||+||+.+|
T Consensus 356 ~~Kle~qp~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~W 435 (1373)
T KOG0384|consen 356 FRKLEKQPEYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITAW 435 (1373)
T ss_pred HHHhhcCccccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCCcc
Q 000684 242 AKEFRKWLPTMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSE 321 (1352)
Q Consensus 242 ~~Ef~kw~p~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN~~ 321 (1352)
++||..|+ ++|+++|+|+..+|.+|++|+|+.... ....+|+++||||+++++|..+|+.|+|.+++|||||||||.+
T Consensus 436 ~~ef~~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~-~~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~ 513 (1373)
T KOG0384|consen 436 EREFETWT-DMNVIVYHGNLESRQLIRQYEFYHSSN-TKKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDE 513 (1373)
T ss_pred HHHHHHHh-hhceeeeecchhHHHHHHHHHheecCC-ccccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchH
Confidence 99999999 999999999999999999999998753 3567999999999999999999999999999999999999999
Q ss_pred hHHHHHHHcccccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhH
Q 000684 322 AQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIK 401 (1352)
Q Consensus 322 Skl~~aL~~l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~ 401 (1352)
|.+|..|..|..++||||||||+|||+.|||+|||||+|+.|.++++|...| ...++.++..||..|+||||||+|+
T Consensus 514 ~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~---~~~~e~~~~~L~~~L~P~~lRr~kk 590 (1373)
T KOG0384|consen 514 SKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEF---DEETEEQVRKLQQILKPFLLRRLKK 590 (1373)
T ss_pred HHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhh---cchhHHHHHHHHHHhhHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998 3456889999999999999999999
Q ss_pred hhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCC-CC
Q 000684 402 DVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTS-IN 480 (1352)
Q Consensus 402 dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~-~~ 480 (1352)
||+++||+|.|+|++|+||++|++||++||++|+.+|.+|.+++..+++|+||+|+||||||||+.+++..+.+... ..
T Consensus 591 dvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~ 670 (1373)
T KOG0384|consen 591 DVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKM 670 (1373)
T ss_pred hhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887654321 12
Q ss_pred chhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCC
Q 000684 481 DTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGS 560 (1352)
Q Consensus 481 ~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s 560 (1352)
....+..+|.+||||++||+||.+|++.||||||||||++|||||++||..++|+|+||||+++.+.|+++||+||+|+|
T Consensus 671 ~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~S 750 (1373)
T KOG0384|consen 671 RDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDS 750 (1373)
T ss_pred hHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCC
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCCCHHHHHHHHHHHHHhhHHH
Q 000684 561 EDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHL 640 (1352)
Q Consensus 561 ~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~TiEE~Il~ra~~K~~L~~~ 640 (1352)
++|||||||||||+||||++||||||||||||||+|+|||+|||||||++.|.||||||++||||.|++||.+||.|+++
T Consensus 751 ddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~a 830 (1373)
T KOG0384|consen 751 DDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHA 830 (1373)
T ss_pred CceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccccccchhhhhhhcchhhHHHHHhcchHhhhcccCccHHHhhhccCCCHHHHHHhhhhhhhhhhhcccccccccccc
Q 000684 641 VIQKLNAEGSWRRKKQRKGNELSAILRFGAEELFKEDRNDEESKKRLLGMDIDEILERAEKVEEKEAEGEAGNELLSAFK 720 (1352)
Q Consensus 641 vi~~~~~~g~~~~~~~~~~~el~~il~~ga~~l~~~~~~~~~~~~~~~~~did~il~~~~~~~~~~~~~~~~~~~~~~f~ 720 (1352)
|||.|++.+.......-+.+||++||+|||++||++.++++ .++++||||+||.|+++++++..+-..+.+++++|+
T Consensus 831 VIQ~m~t~~~~s~~~~f~K~ELsaILKfGA~~lfke~ene~---s~~~e~DIDeIL~rae~~~t~~~~~~~a~e~ls~fk 907 (1373)
T KOG0384|consen 831 VIQRMDTKGKTSKSNPFSKEELSAILKFGAYELFKEEENEE---SKFCEMDIDEILERAETRITEESDFMKASELLSQFK 907 (1373)
T ss_pred HHHhhccccccCCCCCCCHHHHHHHHHhchHHhhhcccccc---ccccccCHHHHHhhcccccccccccchhHHHHhhcc
Confidence 99999985544444455679999999999999999877654 378899999999999998877665567789999999
Q ss_pred ccccccCCCC------cccccccCChhHHHhhhhh---------c-Cccccc-ccccccccCCchhhhhhhccCCCCCch
Q 000684 721 VANFCGAEDD------GSFWSRWIKPEAVAQAEDA---------L-APRAAR-NTKSYAEANEPERSNKRKKKGSELQEP 783 (1352)
Q Consensus 721 ~~~~~~~~~~------~~~w~~~~~~~~~~~~~~~---------~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (1352)
||+|+.++.+ .-.|++|||+++++..+++ . .+|.+. +...+..... + ..+...+.
T Consensus 908 vad~~~dd~~~~~~~~didwd~iipe~~r~~~~eeer~ke~ee~~~~~rer~~k~~~~~~~~~------~--~~~~~~e~ 979 (1373)
T KOG0384|consen 908 VADIKADDPADLEAERDIDWDRIIPEEERERIEEEERLKELEELYSEPRERERKKNRLNDSHG------R--AESRSVEK 979 (1373)
T ss_pred ccccccCChhhhhhhccCChhhhCCHHHHhcchhhhhHHHHHhhccchhhhhhhccccCcccc------c--cccccccc
Confidence 9999986421 1369999999887654332 1 111110 0000000000 0 00000000
Q ss_pred H-HHHHHhhhhccCCCCCCCcchhhhhhcccccCCCCHHHHHHHHHHHHhcCCc-hhHHHHHHHhCCCCCCCcHHHHHHH
Q 000684 784 Q-ERVHKRRKAEFSVPSVPFIDGASAQVRDWSYGNLSKRDATRFYRAVMKFGNQ-SQISLIARDAGGAVATAPQEVVVEL 861 (1352)
Q Consensus 784 ~-~~~~~~~~~~~~~~~~~~~~~e~~~l~~~g~~~~~~~~~~~f~~~~~k~G~~-~~~~~I~~e~~gk~~~~~~e~~~~~ 861 (1352)
. ....+++... .....+..++++++|+|+||||+++||.+ .+++.|+++++ ++..+++.+.++
T Consensus 980 ~~~~~~~~r~r~-------------~~~~g~~~~~~~e~eir~~~ra~~kfg~~~~r~d~~~~~a~--l~~~s~~~~~~l 1044 (1373)
T KOG0384|consen 980 SLGKKGKGRWRE-------------ILKRGEEKGGFTEKEIRRFYRAYLKFGLPLERLDEIIKDAE--LVDKSPAELKKL 1044 (1373)
T ss_pred cccccccccccc-------------ccccchhhcCCCHHHHHHHHHHHHHhccHHHHHHHHHhhce--eeccCHHHHHHH
Confidence 0 0000000000 11122225669999999999999999998 47999999987 777777878899
Q ss_pred HHHHHHHHHHHHhcCCCC---------------CCCCCcccccCcccchhHHHhhHHHHHHHHHHhhcCCCCCCceEecc
Q 000684 862 FDILIDGCREAVEVGSPD---------------PKGPPLLDFFGVSVKANDLINRVEELQLLAKRISRYEDPIKQFRVLS 926 (1352)
Q Consensus 862 ~~~~~~~c~e~v~~~~~~---------------~k~~~~~~~~~v~~~~e~vl~R~~~l~lL~~ki~~~~~p~~~~~i~~ 926 (1352)
+..+++.|..++.+.+.. ++.+..+.|+||.+||+.|+.|+++|..|++.|+.+.++..+|.+++
T Consensus 1045 ~~~~~~~c~~a~~~~~~~~kk~~~~~~~~~~~p~~~a~~~~f~gv~~na~~vl~rv~~L~~L~~~i~~~~e~~~~~~~~~ 1124 (1373)
T KOG0384|consen 1045 GELLHNACKSAVSEFGSNYKKTGGAREGKNKKPERKAVDFKFKGVKVNANKVLLRVEELYYLHKEIPGDPEDPNQFIIDY 1124 (1373)
T ss_pred HHHHHhhhhhhcchhhhccccccccccccccCccchhhheeecceehhHHHHHHHHHHHHHHHHhccCCcccccccccCC
Confidence 999999999998543211 12234688999999999999999999999999998767778999998
Q ss_pred ccCCCC-CCCCCCCCHHHHHHHHHHHhhccCcchHHhHhhhhcccccccCCcccccccCCCCChhhHHHHHHHHHHHHHh
Q 000684 927 YLKPSN-WSKGCGWNQFDDARLLLGIHYHGFGNWENIRLDERLGLTKKIAPVELQHHETFLPRAPNLKERANALLEMELA 1005 (1352)
Q Consensus 927 ~~k~~~-w~~~~~W~~eeD~~LL~gI~kyGyG~We~Ir~D~~L~l~~ki~~~~~~~~~~~~p~a~hL~rR~d~LL~~e~~ 1005 (1352)
.++++. |+ |.|+.++|.+||+|||+||||+|++||+||.|+|++|||+.+. +|+|+||++|++|||+....
T Consensus 1125 ~~~~~~~~~--~~W~~e~Ds~LLiGI~khGygswe~Ir~Dp~L~l~dKi~~~e~------~P~a~~L~~R~~yLls~~~~ 1196 (1373)
T KOG0384|consen 1125 LPKSVHSWD--CDWGSEDDSMLLIGIFKHGYGSWEAIRLDPDLGLTDKIFLVET------VPQAKHLQRRADYLLSLLRK 1196 (1373)
T ss_pred CCccccCcc--cCCCchhhhhHhhhhhhcccccHHHhccCccccchhhhccccc------CCchHHHHHHHHHHHHHHhh
Confidence 777754 76 9999999999999999999999999999999999999999874 99999999999999986554
Q ss_pred hhccc-ccccccCccCCCCCCC----C-----CccCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCccccCCcccC
Q 000684 1006 AVGAK-NVNAKVGRKASKKGRE----K-----SENILNMPISRLKRDKKGKPGSAKVNFQTTKDRFHKPQRVEQPLTKEE 1075 (1352)
Q Consensus 1006 ~~~~~-~~~~k~~~k~~~~~~~----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 1075 (1352)
..... ..+.++.++...+... . .+.....+.....+..+++... ........+.++.... .....
T Consensus 1197 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~ 1271 (1373)
T KOG0384|consen 1197 HDKGNTPKKLKREKKRPKKQSAVKRQKAKAGDLSSTKGESLVPAESEDDLKDPG---RERSKSSSSLVKRLLT--LSDEG 1271 (1373)
T ss_pred cccCCCchhhhccccccccccccccccCCCCCcccccccccccccccccccccc---cccCCCcccchhhhhc--ccCcC
Confidence 42211 1111111111111000 0 0000000000000000000000 0000000000000000 00001
Q ss_pred CCCCCChhHHhhhhhhhhHHHHHHHhHHHHHHHHHHHhhhhcCCCCChhhhcccCCCccccccchhhhhhcchhhhhchH
Q 000684 1076 GEMSDNEEVYEQFKEVKWMEWCEDVMADEIRTLQRLQRLQATSDNLPKEKVASVFPSFCWHIPLYSRIKHLTSLLFFHFI 1155 (1352)
Q Consensus 1076 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1155 (1352)
...+ .++.++. ++++.|++.|+|++++|++|.. ++++|+++|+
T Consensus 1272 ~~~~-~~e~~~~----e~~~~c~~~~~~vk~~lk~l~~---~~~~l~~~e~----------------------------- 1314 (1373)
T KOG0384|consen 1272 RPLS-NKEDLDP----EIFERCKERMRPVKKALKRLTL---PSKGLNKEEQ----------------------------- 1314 (1373)
T ss_pred cccc-cccccCH----HHHHHHHhhhHHHHHHHHHhcc---ccccccHHHH-----------------------------
Confidence 1111 1222222 3789999999999988888877 5579999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhhhhhHHHHhhhHHhhhhccccCChHHHHHHHHHHhh
Q 000684 1156 QVLSKIRNYLQLIGRRIDQIVLEHEEELYKQDRMTMRLWNYVSTFSNLSGEKLHQIYSKLKQ 1217 (1352)
Q Consensus 1156 ~~~~~~~~~L~~iG~~i~~~~~~~~~~~~~~~~~~~~lW~~~s~f~~~~~~~l~~my~~~~~ 1217 (1352)
+.++|+||..||++|+.|+.++..+ . ...|+++| .||++|||.++.+|+.+|..+..
T Consensus 1315 --~~~~r~~l~~~g~~i~~~~~~~~~~-~-~~~w~~~l-~f~~~f~~~d~~~l~~ly~~~~k 1371 (1373)
T KOG0384|consen 1315 --LKHTRRCLTQIGRHIESCLKEYDED-E-KKDWRKNL-IFVSKFTESDESKLTKLYSMVAK 1371 (1373)
T ss_pred --HHHHHHHHHHHHHHHHHHhccCCch-h-HHHHHhhh-hheecccccchHHHHHHHHHHHh
Confidence 9999999999999999999998522 2 77899999 99999999999999999998865
No 2
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=9.3e-155 Score=1358.94 Aligned_cols=769 Identities=43% Similarity=0.717 Sum_probs=638.8
Q ss_pred ccCCCccCCCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHH
Q 000684 166 DEQPEWLRGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEF 245 (1352)
Q Consensus 166 ~~~P~~~~~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef 245 (1352)
..+|.++.+++|||||++|+|||+.+|.+|.|||||||||||||+||||||.||....+..||||||||+|||.||.+||
T Consensus 157 ~~sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~Ef 236 (971)
T KOG0385|consen 157 EDSPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMNEF 236 (971)
T ss_pred cCCchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHHHH
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCCcchHHH
Q 000684 246 RKWLPTMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLY 325 (1352)
Q Consensus 246 ~kw~p~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN~~Skl~ 325 (1352)
.+|+|++++++|+|++..|..+++--+ ....|+|+||||++++++..+|..+.|.||||||||||||.+|.++
T Consensus 237 ~rf~P~l~~~~~~Gdk~eR~~~~r~~~-------~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN~~s~L~ 309 (971)
T KOG0385|consen 237 KRFTPSLNVVVYHGDKEERAALRRDIM-------LPGRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKNEKSKLS 309 (971)
T ss_pred HHhCCCcceEEEeCCHHHHHHHHHHhh-------ccCCCceEeehHHHHHhhHHHHhcCCceEEEechhhhhcchhhHHH
Confidence 999999999999999999987665432 3348999999999999999999999999999999999999999999
Q ss_pred HHHHcccccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhccc-ccccHHHHHHHHHhhcchhhhhhhHhhh
Q 000684 326 TTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNL-SSFNENELANLHMELRPHILRRIIKDVE 404 (1352)
Q Consensus 326 ~aL~~l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~-~~~~~~~i~~L~~~L~p~~LRR~k~dv~ 404 (1352)
+.|+.|.+.+||||||||||||+.|||+||+||.|+.|.+.++|..+|..- ...+...+.+||.+|+||+|||+|.+|+
T Consensus 310 ~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe 389 (971)
T KOG0385|consen 310 KILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVE 389 (971)
T ss_pred HHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHh
Confidence 999999999999999999999999999999999999999999999999763 3334568999999999999999999999
Q ss_pred ccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCchhh
Q 000684 405 KSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDTSK 484 (1352)
Q Consensus 405 ~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~~~ 484 (1352)
++|||+.|.+++|+||.+|+++|+.++.+.+.+++....+....++||+|+|||||||||||++++++++.. .
T Consensus 390 ~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyt-------t 462 (971)
T KOG0385|consen 390 KSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYT-------T 462 (971)
T ss_pred hcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCC-------c
Confidence 999999999999999999999999999999999988777778899999999999999999999998875432 2
Q ss_pred HHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcE
Q 000684 485 LERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFC 564 (1352)
Q Consensus 485 l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~v 564 (1352)
.++|+.+||||.+|++||.+|++.||||||||||++|||||++||..+||.||||||+++.++|..+|+.||+++|..||
T Consensus 463 dehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~Fi 542 (971)
T KOG0385|consen 463 DEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFI 542 (971)
T ss_pred chHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEE
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCCCHHHHHHHHHHHHHhhHHHHHcc
Q 000684 565 FLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQK 644 (1352)
Q Consensus 565 fLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~TiEE~Il~ra~~K~~L~~~vi~~ 644 (1352)
|||||||||+||||++|||||+||+|||||+|+|||+|||||||+++|.||||||++||||+|++||..|+.|++.||+.
T Consensus 543 FlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld~~VIq~ 622 (971)
T KOG0385|consen 543 FLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLDKLVIQQ 622 (971)
T ss_pred EEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhchhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred ccccchhhhhhh--cchhhHHHHHhcchHhhhcccCccHHHhhhccCCCHHHHHHhhhhhhhhhhhcc--ccccccccc-
Q 000684 645 LNAEGSWRRKKQ--RKGNELSAILRFGAEELFKEDRNDEESKKRLLGMDIDEILERAEKVEEKEAEGE--AGNELLSAF- 719 (1352)
Q Consensus 645 ~~~~g~~~~~~~--~~~~el~~il~~ga~~l~~~~~~~~~~~~~~~~~did~il~~~~~~~~~~~~~~--~~~~~~~~f- 719 (1352)
|++..... ...+++.+|++||+..+|...+++ ..+ |||.||++++..+.+..+.. .+...+..|
T Consensus 623 ----g~l~~~~~~~~~k~~~l~~~r~g~~~~f~~~es~------~~d-Did~il~~~e~kt~e~~~~~~~~~~~~~~~~~ 691 (971)
T KOG0385|consen 623 ----GRLEEQKSNGLGKDELLNLLRFGADPVFESKEST------ISD-DIDRILERGEEKTAELNAKEAKLGESDLRNFG 691 (971)
T ss_pred ----CchhhhhccccchHHHHHHHHcCchhhhhhcccc------cch-hHHHHHHhhhhhccCcchHHHhhCcchhhhcC
Confidence 54433322 345899999999999999987653 334 99999999997655443211 122222223
Q ss_pred --cccccccCC---CCcccccccCChhHHHhhh------hhc--CcccccccccccccCCc--hhhhhhhccCCCCCchH
Q 000684 720 --KVANFCGAE---DDGSFWSRWIKPEAVAQAE------DAL--APRAARNTKSYAEANEP--ERSNKRKKKGSELQEPQ 784 (1352)
Q Consensus 720 --~~~~~~~~~---~~~~~w~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 784 (1352)
.+.+|.... ....+ .||.+..++..+ +.+ +.+.++.+. ..+++. ..... ..+..
T Consensus 692 ~~~~y~~eG~d~~ek~~~~--~wiep~krerk~~d~y~r~~l~~g~~~P~~~~--~~d~qf~p~~L~e-------l~~ke 760 (971)
T KOG0385|consen 692 MISVYNFEGEDYKEKQSLF--KWIEPPKRERKANDAYFREALRVGEPPPKQPE--VQDFQFFPKRLFE-------LLEKE 760 (971)
T ss_pred cceeeccCCcchhhhhhhh--hhcCCchhhhhhhhhHHHHHHhcCCCCCCCcc--ccccccCcHHHHH-------HHHHH
Confidence 233343221 11122 256655543221 111 111122211 122221 11000 00000
Q ss_pred HH-HHHhhhhccCCCCCCCcc---hhhhhhcccccCCCCHHHHHHHHHHHHhcCCchhHHHHHHHhCCCCCCCcHHHHHH
Q 000684 785 ER-VHKRRKAEFSVPSVPFID---GASAQVRDWSYGNLSKRDATRFYRAVMKFGNQSQISLIARDAGGAVATAPQEVVVE 860 (1352)
Q Consensus 785 ~~-~~~~~~~~~~~~~~~~~~---~e~~~l~~~g~~~~~~~~~~~f~~~~~k~G~~~~~~~I~~e~~gk~~~~~~e~~~~ 860 (1352)
-. .+|+..........|+.. .+++.++.+||++||++||+.||+|+.|||+ ++++.||+++++ ..+.+.+
T Consensus 761 i~~~~k~~e~~kin~~~~lt~ee~~~k~~ll~~gft~w~k~df~~fi~a~eKygr-~di~~ia~~~e~-----~~eev~~ 834 (971)
T KOG0385|consen 761 IEYYRKTIEQKKINNAEPLTQEEEEEKEELLSQGFTNWTKRDFNQFIKANEKYGR-DDIENIAAEVEG-----TPEEVGE 834 (971)
T ss_pred HHHHHHHHHHHhccCCCCCCcHHHhhhhhhhhccccchhhhhHHHHHHHhhccCc-chhhhhHHhhcC-----CHHHHHH
Confidence 00 001111111222233333 3347799999999999999999999999998 789999999985 3455679
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCcccccCcccchh-HHHhhH-HHHHHHHHHhhcCCCCCCceEeccccCCCCCCCCCC
Q 000684 861 LFDILIDGCREAVEVGSPDPKGPPLLDFFGVSVKAN-DLINRV-EELQLLAKRISRYEDPIKQFRVLSYLKPSNWSKGCG 938 (1352)
Q Consensus 861 ~~~~~~~~c~e~v~~~~~~~k~~~~~~~~~v~~~~e-~vl~R~-~~l~lL~~ki~~~~~p~~~~~i~~~~k~~~w~~~~~ 938 (1352)
|+.+||++|+++.+.+. ++. .|+.+ ..++|. ..+.+|..++.+|+.| .+++|.| ++| +++.
T Consensus 835 y~rvfwer~~el~d~ek-------~~~----~ie~~e~~i~r~~~~~~~ld~k~~~~k~p-~~l~i~~---~~n--k~~~ 897 (971)
T KOG0385|consen 835 YARVFWERLEELSDIEK-------IIY----QIERGEKRIQRGDSIKKALDDKIARYKAP-HQLRIQY---GTN--KGKN 897 (971)
T ss_pred HHHHHHHHHHHhhhhHH-------HHH----HHhhhHhhhhHHHHHHHHHhhhHhhhcCc-hheeeee---ccc--cCCC
Confidence 99999999999876422 111 23333 344444 4679999999999999 8999998 334 6799
Q ss_pred CCHHHHHHHHHHHhhccCcc---hHHhHhhhhcccccccCCcccccccCCC-CChh-hHHHHHHHHHH
Q 000684 939 WNQFDDARLLLGIHYHGFGN---WENIRLDERLGLTKKIAPVELQHHETFL-PRAP-NLKERANALLE 1001 (1352)
Q Consensus 939 W~~eeD~~LL~gI~kyGyG~---We~Ir~D~~L~l~~ki~~~~~~~~~~~~-p~a~-hL~rR~d~LL~ 1001 (1352)
|++++|+||+||+||+||++ |+.+++.+. -.+.|+|+|++ .+.. +|+|||++||.
T Consensus 898 ys~~edrfL~~~l~K~g~~~~~~~e~lr~~~~--------~~~~frfdw~~~sRt~~el~Rr~ntli~ 957 (971)
T KOG0385|consen 898 YSEEEDRFLECMLHKLGFDAENVYEELRQPIR--------NSPQFRFDWFIKSRTAMELQRRCNTLIT 957 (971)
T ss_pred CchhhHHHHHHHHHHhccCchhHHHHHHHHHh--------cCcccccceeeehhhHHHHHhcCCeeEE
Confidence 99999999999999999998 999999988 56678999985 5655 59999999963
No 3
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=4.4e-129 Score=1238.03 Aligned_cols=786 Identities=39% Similarity=0.669 Sum_probs=641.7
Q ss_pred ccccccCCCccCCCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHH
Q 000684 162 LRKLDEQPEWLRGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNW 241 (1352)
Q Consensus 162 ~~~~~~~P~~~~~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW 241 (1352)
...+..+|.++. ++|||||++||+||+.+|.++.|||||||||||||+|+|+++.++....+..||+|||||.|++.||
T Consensus 156 ~~~l~~qP~~i~-~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW 234 (1033)
T PLN03142 156 GTRLLVQPSCIK-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNW 234 (1033)
T ss_pred CceeccCChHhc-cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHH
Confidence 345678999998 7999999999999999999999999999999999999999999998877888999999999999999
Q ss_pred HHHHHHHcCCCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCCcc
Q 000684 242 AKEFRKWLPTMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSE 321 (1352)
Q Consensus 242 ~~Ef~kw~p~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN~~ 321 (1352)
.+||.+|+|.+++++|+|+...|..+....+ ...+|+|+||||+++.++...|..+.|++|||||||++||..
T Consensus 235 ~~Ei~kw~p~l~v~~~~G~~~eR~~~~~~~~-------~~~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN~~ 307 (1033)
T PLN03142 235 MNEIRRFCPVLRAVKFHGNPEERAHQREELL-------VAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNEN 307 (1033)
T ss_pred HHHHHHHCCCCceEEEeCCHHHHHHHHHHHh-------cccCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccCCHH
Confidence 9999999999999999999988877655433 234699999999999999999999999999999999999999
Q ss_pred hHHHHHHHcccccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhccccc-ccHHHHHHHHHhhcchhhhhhh
Q 000684 322 AQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSS-FNENELANLHMELRPHILRRII 400 (1352)
Q Consensus 322 Skl~~aL~~l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~-~~~~~i~~L~~~L~p~~LRR~k 400 (1352)
|+++++++.+.+.+||||||||+||++.|||+||+||.|+.|++...|..+|..... .....+..||.+|+|||+||+|
T Consensus 308 Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~K 387 (1033)
T PLN03142 308 SLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLK 387 (1033)
T ss_pred HHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhH
Confidence 999999999999999999999999999999999999999999999999999976432 2345688999999999999999
Q ss_pred HhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCC
Q 000684 401 KDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSIN 480 (1352)
Q Consensus 401 ~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~ 480 (1352)
.+|...|||+.+.+|+|+||+.|+++|+.++.+....++.+ +....+++++|+||+|||||||+.+++++...
T Consensus 388 sdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g--~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~----- 460 (1033)
T PLN03142 388 SDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAG--GERKRLLNIAMQLRKCCNHPYLFQGAEPGPPY----- 460 (1033)
T ss_pred HHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHhCCHHhhhcccccCcc-----
Confidence 99999999999999999999999999999999988877654 34567899999999999999999877654321
Q ss_pred chhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCC
Q 000684 481 DTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGS 560 (1352)
Q Consensus 481 ~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s 560 (1352)
.....++..|||+.+|++||..+...|+||||||||+.|+++|+++|..+|+.|++|||+++..+|+.+|++||++++
T Consensus 461 --~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s 538 (1033)
T PLN03142 461 --TTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGS 538 (1033)
T ss_pred --cchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccC
Confidence 123578889999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCCCHHHHHHHHHHHHHhhHHH
Q 000684 561 EDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHL 640 (1352)
Q Consensus 561 ~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~TiEE~Il~ra~~K~~L~~~ 640 (1352)
..++|||||+|||+||||++||+||+||+||||+.++||+||||||||+++|.|||||+++||||+|++++.+|+.|+..
T Consensus 539 ~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~Ld~~ 618 (1033)
T PLN03142 539 EKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDAL 618 (1033)
T ss_pred CceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccccccchhhhhhhcchhhHHHHHhcchHhhhcccCccHHHhhhccCCCHHHHHHhhhhhhhhhhhcc--cccccccc
Q 000684 641 VIQKLNAEGSWRRKKQRKGNELSAILRFGAEELFKEDRNDEESKKRLLGMDIDEILERAEKVEEKEAEGE--AGNELLSA 718 (1352)
Q Consensus 641 vi~~~~~~g~~~~~~~~~~~el~~il~~ga~~l~~~~~~~~~~~~~~~~~did~il~~~~~~~~~~~~~~--~~~~~~~~ 718 (1352)
||+. |.+......+.+||.+||+|||+.+|+.++. .+++.|||.||+|++..+.+..... -+...+ .
T Consensus 619 Vi~~----g~~~~~~~~~~~eL~~ll~~ga~~~f~~~~~------~~~~~did~il~~~~~~~~~~~~~~~~~~~~~~-~ 687 (1033)
T PLN03142 619 VIQQ----GRLAEQKTVNKDELLQMVRYGAEMVFSSKDS------TITDEDIDRIIAKGEEATAELDAKMKKFTEDAI-K 687 (1033)
T ss_pred HHhc----CcccccccCCHHHHHHHHHhChHHhhhccCC------CCCHHHHHHHHHhcHHHHHHHHHHHHHhchhhh-c
Confidence 9985 3332223345689999999999999975542 4789999999999987764433211 111222 2
Q ss_pred cccc------ccccCC-CCcc--cc-----cccCChhHHHhh---------hh---------hcCcccccccccccccCC
Q 000684 719 FKVA------NFCGAE-DDGS--FW-----SRWIKPEAVAQA---------ED---------ALAPRAARNTKSYAEANE 766 (1352)
Q Consensus 719 f~~~------~~~~~~-~~~~--~w-----~~~~~~~~~~~~---------~~---------~~~~~~~~~~~~~~~~~~ 766 (1352)
|+.. .|.... .+.. .+ ..||.+..|+.. .+ ...||.+|.+.-+...++
T Consensus 688 f~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~re~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~ 767 (1033)
T PLN03142 688 FKMDDTAELYDFDDEDDKDENKLDFKKIVSDNWIDPPKRERKRNYSESEYFKQAMRQGAPAKPKEPRIPRMPQLHDFQFF 767 (1033)
T ss_pred ccccCCcceeeecCccccchhhhhHhhhccccccccchhhhhcccchhHHHHHHHhcCCcccCCCCCCCCCCCCccccCC
Confidence 4321 121100 0000 01 134555555431 01 112333333222333333
Q ss_pred ch-h---------hhhhhccCCCCCchHHHHHHhhhhccCCCCCCCcchhh---hhhcccccCCCCHHHHHHHHHHHHhc
Q 000684 767 PE-R---------SNKRKKKGSELQEPQERVHKRRKAEFSVPSVPFIDGAS---AQVRDWSYGNLSKRDATRFYRAVMKF 833 (1352)
Q Consensus 767 ~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~l~~~g~~~~~~~~~~~f~~~~~k~ 833 (1352)
+. + ...++... ..+..+... ......+..|+++++. ++|+.+||++||++||++||+||.||
T Consensus 768 ~~~~l~~l~~~e~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~lt~~e~~~k~~l~~~gf~~w~~~~f~~f~~~~~~~ 842 (1033)
T PLN03142 768 NVQRLTELYEKEVRYLMQAHQ--KGQLKDTID---VAEPEEPGDPLTAEEQEEKEQLLEEGFSTWSRRDFNAFIRACEKY 842 (1033)
T ss_pred CHHHHHHHHHHHHHHHhcccc--CCchhhhhh---hccccccCCCCCHHHHHHHHHHHhcCcCcccHHHHHHHHHHHHHh
Confidence 21 1 11111111 111111111 1233445667777653 78999999999999999999999999
Q ss_pred CCchhHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccccCcccch-hHHHhhHHH-HHHHHHH
Q 000684 834 GNQSQISLIARDAGGAVATAPQEVVVELFDILIDGCREAVEVGSPDPKGPPLLDFFGVSVKA-NDLINRVEE-LQLLAKR 911 (1352)
Q Consensus 834 G~~~~~~~I~~e~~gk~~~~~~e~~~~~~~~~~~~c~e~v~~~~~~~k~~~~~~~~~v~~~~-e~vl~R~~~-l~lL~~k 911 (1352)
|+ ++++.||.+++| ++.++|.+|+.+||++|.++.+.+. ++. .|.. +..+.|..+ .++|+.|
T Consensus 843 gr-~~~~~i~~~~~~----k~~~ev~~y~~~f~~~~~~~~~~~~-------~~~----~ie~~e~~~~~~~~~~~~~~~k 906 (1033)
T PLN03142 843 GR-NDIKSIASEMEG----KTEEEVERYAKVFWERYKELNDYDR-------IIK----NIERGEARISRKDEIMKAIGKK 906 (1033)
T ss_pred CH-hHHHHHHHHhcC----CCHHHHHHHHHHHHHhhhhhccHHH-------HHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 98 789999999986 3566678999999999998654322 221 2443 446666665 5999999
Q ss_pred hhcCCCCCCceEeccccCCCCCCCCCCCCHHHHHHHHHHHhhccCcchHHhHhhhhcccccccCCcccccccCCC-CChh
Q 000684 912 ISRYEDPIKQFRVLSYLKPSNWSKGCGWNQFDDARLLLGIHYHGFGNWENIRLDERLGLTKKIAPVELQHHETFL-PRAP 990 (1352)
Q Consensus 912 i~~~~~p~~~~~i~~~~k~~~w~~~~~W~~eeD~~LL~gI~kyGyG~We~Ir~D~~L~l~~ki~~~~~~~~~~~~-p~a~ 990 (1352)
|..|.+|+.+++|.| +. ++++.|+++||+||||++|+||||+|+.||.+++ ..+.|+|+||+ .+++
T Consensus 907 ~~~~~~p~~~l~~~~---~~--~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~--------~~~~f~fd~~~~srt~ 973 (1033)
T PLN03142 907 LDRYKNPWLELKIQY---GQ--NKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFR--------TSPLFRFDWFVKSRTP 973 (1033)
T ss_pred HHHccCcHHHceeec---CC--CCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHH--------hCCceeeehhhccCCH
Confidence 999999999999998 32 3568999999999999999999999999999999 77889999975 5655
Q ss_pred -hHHHHHHHHHH---HHHhhhcc
Q 000684 991 -NLKERANALLE---MELAAVGA 1009 (1352)
Q Consensus 991 -hL~rR~d~LL~---~e~~~~~~ 1009 (1352)
+|+|||++||. +|.++.+.
T Consensus 974 ~~~~~r~~~l~~~~~~e~~~~~~ 996 (1033)
T PLN03142 974 QELARRCDTLIRLIEKENQEYDE 996 (1033)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Confidence 79999999974 55544443
No 4
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=4.3e-101 Score=927.39 Aligned_cols=515 Identities=45% Similarity=0.759 Sum_probs=454.4
Q ss_pred ccccccCCCccCCCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHH
Q 000684 162 LRKLDEQPEWLRGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNW 241 (1352)
Q Consensus 162 ~~~~~~~P~~~~~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW 241 (1352)
-..+.+||..+.||+|++||+.||.||+.+|.++.|||||||||||||+|+|+++.||++..+..||+|||||+|+|.||
T Consensus 380 ~E~v~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW 459 (1157)
T KOG0386|consen 380 KENVAKQPSSLQGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNW 459 (1157)
T ss_pred hhccccCcchhcCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCCcc
Q 000684 242 AKEFRKWLPTMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSE 321 (1352)
Q Consensus 242 ~~Ef~kw~p~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN~~ 321 (1352)
..||.+|+|++..++|.|++..|..+..- ....+|+|++|||+.+.++...|.+|.|.|+||||+|||||..
T Consensus 460 ~~Ef~kWaPSv~~i~YkGtp~~R~~l~~q--------ir~gKFnVLlTtyEyiikdk~lLsKI~W~yMIIDEGHRmKNa~ 531 (1157)
T KOG0386|consen 460 SSEFPKWAPSVQKIQYKGTPQQRSGLTKQ--------QRHGKFNVLLTTYEYIIKDKALLSKISWKYMIIDEGHRMKNAI 531 (1157)
T ss_pred hhhccccccceeeeeeeCCHHHHhhHHHH--------HhcccceeeeeeHHHhcCCHHHHhccCCcceeecccccccchh
Confidence 99999999999999999999999865432 1336999999999999999999999999999999999999999
Q ss_pred hHHHHHHH-cccccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccc--------c---HHHHHHHHH
Q 000684 322 AQLYTTLS-EFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSF--------N---ENELANLHM 389 (1352)
Q Consensus 322 Skl~~aL~-~l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~--------~---~~~i~~L~~ 389 (1352)
+++...|. .+.+.+|+||||||+||++.|||+||+|+.|.+|.+...|.+||..+... . --.+.+||+
T Consensus 532 ~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHk 611 (1157)
T KOG0386|consen 532 CKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHK 611 (1157)
T ss_pred hHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHH
Confidence 99999999 78999999999999999999999999999999999999999999653211 1 124889999
Q ss_pred hhcchhhhhhhHhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhc-cccCchhhHHHHHHHHHHhcCCcccccc
Q 000684 390 ELRPHILRRIIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNK-GVRGNQVSLLNIVVELKKCCNHPFLFES 468 (1352)
Q Consensus 390 ~L~p~~LRR~k~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~-~~~~~~~~llnil~~Lrk~cnHP~L~~~ 468 (1352)
+|+||+|||.|++|+..||.|++.++.|.||..|+.+|+.+.......+.. ..++...++.|.+|+|||||||||+|..
T Consensus 612 VLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ 691 (1157)
T KOG0386|consen 612 VLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFAN 691 (1157)
T ss_pred hhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhh
Confidence 999999999999999999999999999999999999999988654333222 1334556799999999999999999987
Q ss_pred ccCCCCCCCCCCchhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHH
Q 000684 469 ADHGYGGDTSINDTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELR 548 (1352)
Q Consensus 469 ~e~~~~~~~~~~~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR 548 (1352)
++..+.... ....|+..|||+.+|+++|.+|++.|||||+||||+++++||++||..++|.|.|+||+++.++|
T Consensus 692 ve~~~~~~~------~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eR 765 (1157)
T KOG0386|consen 692 VENSYTLHY------DIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEER 765 (1157)
T ss_pred hcccccccc------ChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhH
Confidence 766543221 11678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCCCHHHHHH
Q 000684 549 HQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDIL 628 (1352)
Q Consensus 549 ~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~TiEE~Il 628 (1352)
...++.||+|+++.|+||+||+|||+|+||++|||||+||+||||+.|+||.+|||||||++.|+|+||++.++|||+|+
T Consensus 766 g~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il 845 (1157)
T KOG0386|consen 766 GDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKIL 845 (1157)
T ss_pred HHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHccccccchhhhhhhcchhhHHHHHhcchHhhhcccCccHHHhhhccCCCHHHHHHhhhh
Q 000684 629 ERAKKKMVLDHLVIQKLNAEGSWRRKKQRKGNELSAILRFGAEELFKEDRNDEESKKRLLGMDIDEILERAEK 701 (1352)
Q Consensus 629 ~ra~~K~~L~~~vi~~~~~~g~~~~~~~~~~~el~~il~~ga~~l~~~~~~~~~~~~~~~~~did~il~~~~~ 701 (1352)
.+|..|+.++..||+. |.|+.+... +|=+++|. .+....+++++ .....+..|..+|.|.|.
T Consensus 846 ~~a~~Kl~~d~kviqa----g~fdn~st~--~eR~~~Le----~~l~~~~~~~~-~~v~~~~~ln~~larsee 907 (1157)
T KOG0386|consen 846 AEAFYKLDVDGKVIQA----GKFDNKSTA--EEREMFLE----QLLEMEGDEEE-EEVPDDEVLNSMLARSEE 907 (1157)
T ss_pred HHHHHhcCchHhhhhc----ccccCCCcH--HHHHHHHH----HHHhCCCcccc-ccCCcHHHHHHHHhcchH
Confidence 9999999999999995 666544322 33333332 23333322221 122334458889999887
No 5
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=7.9e-98 Score=881.73 Aligned_cols=472 Identities=41% Similarity=0.666 Sum_probs=409.8
Q ss_pred cccCCCccC-CCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHH
Q 000684 165 LDEQPEWLR-GGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAK 243 (1352)
Q Consensus 165 ~~~~P~~~~-~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~ 243 (1352)
+.+||..+. +.+|+|||+.|||||.-+|.++.+||||||||||||+|+|||+++|...+. .||||||||.|||.||.+
T Consensus 387 ~~~qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~-~gpHLVVvPsSTleNWlr 465 (941)
T KOG0389|consen 387 ITEQPKLLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGN-PGPHLVVVPSSTLENWLR 465 (941)
T ss_pred cccCccccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCC-CCCcEEEecchhHHHHHH
Confidence 456888775 679999999999999999999999999999999999999999999998755 999999999999999999
Q ss_pred HHHHHcCCCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHh---hHhhhhccCcceEecchhcccCCc
Q 000684 244 EFRKWLPTMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLK---DKAVLSKIKWNYLMVDEAHRLKNS 320 (1352)
Q Consensus 244 Ef~kw~p~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~---d~~~L~~i~w~~lIVDEAHrlKN~ 320 (1352)
||.+|||.+.|..|+|+..+|..++..-- ....+|+|+||||..+.. |..+|+..+|+|+|.||||.|||.
T Consensus 466 Ef~kwCPsl~Ve~YyGSq~ER~~lR~~i~------~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~ 539 (941)
T KOG0389|consen 466 EFAKWCPSLKVEPYYGSQDERRELRERIK------KNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNR 539 (941)
T ss_pred HHHHhCCceEEEeccCcHHHHHHHHHHHh------ccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhcc
Confidence 99999999999999999999998876421 123389999999998864 788999999999999999999999
Q ss_pred chHHHHHHHcccccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCC-hhHHHHHhcccccc---------cHHHHHHHHHh
Q 000684 321 EAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKS-KDDFIQNYKNLSSF---------NENELANLHME 390 (1352)
Q Consensus 321 ~Skl~~aL~~l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~-~~~F~~~f~~~~~~---------~~~~i~~L~~~ 390 (1352)
.|..|+.|+.+.+++||||||||+||||.||++||.|++|+.|.+ .+++..-|..-... .++.+.+...+
T Consensus 540 ~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~i 619 (941)
T KOG0389|consen 540 TSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTI 619 (941)
T ss_pred chHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999975 45565555432210 13468888999
Q ss_pred hcchhhhhhhHhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccc-
Q 000684 391 LRPHILRRIIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESA- 469 (1352)
Q Consensus 391 L~p~~LRR~k~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~- 469 (1352)
+.||+|||.|.+|.++||||..+|.+|+|+..|+++|..+++.....++.........--+++|+|||++|||.||...
T Consensus 620 m~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y 699 (941)
T KOG0389|consen 620 MKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIY 699 (941)
T ss_pred hhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhc
Confidence 9999999999999999999999999999999999999998887633332222111111156999999999999998531
Q ss_pred --------------cCCCCCC---------CCCCchh---------------hHHHHhhhcchhHHHHHHHHHhhhcCCe
Q 000684 470 --------------DHGYGGD---------TSINDTS---------------KLERIILSSGKLVILDKLLVRLHETKHR 511 (1352)
Q Consensus 470 --------------e~~~~~~---------~~~~~~~---------------~l~~li~~SgKl~~L~kLL~~l~~~g~K 511 (1352)
++.+... ..+++.+ .-..++..|||...|.+||+++++.|+|
T Consensus 700 ~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~R 779 (941)
T KOG0389|consen 700 TDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDR 779 (941)
T ss_pred cHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCE
Confidence 1111100 0011111 1122456799999999999999999999
Q ss_pred EEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEEEEcCCCC
Q 000684 512 VLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDW 591 (1352)
Q Consensus 512 VLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdW 591 (1352)
|||||||+.|||||+-+|...++.|+||||+|....||.+|+.||.+ .+.|||||||+|||.||||++||+||++|.++
T Consensus 780 VLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d-~difVFLLSTKAGG~GINLt~An~VIihD~dF 858 (941)
T KOG0389|consen 780 VLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTD-KDIFVFLLSTKAGGFGINLTCANTVIIHDIDF 858 (941)
T ss_pred EEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccC-CceEEEEEeeccCcceecccccceEEEeecCC
Confidence 99999999999999999999999999999999999999999999994 56799999999999999999999999999999
Q ss_pred ChhhHHHHhhhhcccCCCceEEEEEEecCCCHHHHHHHHHHHHHhhHHHHHcc
Q 000684 592 NPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQK 644 (1352)
Q Consensus 592 NP~~dlQAigRahRiGQkk~V~VyrLvt~~TiEE~Il~ra~~K~~L~~~vi~~ 644 (1352)
||.+|.||.+||||+||+|+|+|||||+++||||.|++.|+.|+.|+..+...
T Consensus 859 NP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~ 911 (941)
T KOG0389|consen 859 NPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTED 911 (941)
T ss_pred CCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccC
Confidence 99999999999999999999999999999999999999999999999998764
No 6
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=1.7e-97 Score=890.64 Aligned_cols=466 Identities=43% Similarity=0.762 Sum_probs=416.8
Q ss_pred CCccCCCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHHHHH
Q 000684 169 PEWLRGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRKW 248 (1352)
Q Consensus 169 P~~~~~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef~kw 248 (1352)
|..+ .|.||+||..|++||+.+|.++.|||||||||||||+|+|+||++|....++.||||||||+|++-||+-||++|
T Consensus 609 PsLL-rGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElKRw 687 (1958)
T KOG0391|consen 609 PSLL-RGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELKRW 687 (1958)
T ss_pred hHHH-HHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHhhh
Confidence 4434 489999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCCcchHHHHHH
Q 000684 249 LPTMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTL 328 (1352)
Q Consensus 249 ~p~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN~~Skl~~aL 328 (1352)
||++++..|+|+..+|+.-++- ..++..|||+||||..+..|...|....|.|+|+||||++||..|+.+++|
T Consensus 688 cPglKILTYyGs~kErkeKRqg-------W~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKnfksqrWQAl 760 (1958)
T KOG0391|consen 688 CPGLKILTYYGSHKERKEKRQG-------WAKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKNFKSQRWQAL 760 (1958)
T ss_pred CCcceEeeecCCHHHHHHHhhc-------ccCCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcchhHHHHHHH
Confidence 9999999999999999876652 235668999999999999999999999999999999999999999999999
Q ss_pred HcccccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccc--------cccHHHHHHHHHhhcchhhhhhh
Q 000684 329 SEFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLS--------SFNENELANLHMELRPHILRRII 400 (1352)
Q Consensus 329 ~~l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~--------~~~~~~i~~L~~~L~p~~LRR~k 400 (1352)
..|++.+|||||||||||++.|||+|++||+|..|.+.++|..||.+.- ..+...+.+||++|+||+|||+|
T Consensus 761 lnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEgsqeyn~klV~RLHkVlrPfiLRRlK 840 (1958)
T KOG0391|consen 761 LNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEGSQEYNHKLVIRLHKVLRPFILRRLK 840 (1958)
T ss_pred hccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhcccchhhchHHHHHHHHHhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998742 23456799999999999999999
Q ss_pred HhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCcccccccc----------
Q 000684 401 KDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESAD---------- 470 (1352)
Q Consensus 401 ~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e---------- 470 (1352)
.||++.||.|.|++|+|.||.-|+.+|...+.+.-..-+ -..|+-.+++||+|+||||||||.||+.-.
T Consensus 841 ~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~TKet-LkSGhfmsVlnilmqLrKvCNHPnLfEpRpv~ssfV~e~l 919 (1958)
T KOG0391|consen 841 RDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPGTKET-LKSGHFMSVLNILMQLRKVCNHPNLFEPRPVGSSFVAEPL 919 (1958)
T ss_pred HHHHHhcchhhhhheeeehhhhHHHHHHHHhhccchhhH-hhcCchhHHHHHHHHHHHHcCCCCcCCCCCCCcccccCce
Confidence 999999999999999999999999999988876432211 134677899999999999999999873200
Q ss_pred ---------------------------------------------------C---C----------CCC-----------
Q 000684 471 ---------------------------------------------------H---G----------YGG----------- 475 (1352)
Q Consensus 471 ---------------------------------------------------~---~----------~~~----------- 475 (1352)
. . ..+
T Consensus 920 ~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~~g~~F~~~aa~at 999 (1958)
T KOG0391|consen 920 EYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQLSLRGRPPIPTFAGAPFQTSAASAT 999 (1958)
T ss_pred eccccccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccccccCCCCCCCccccccccccchhccc
Confidence 0 0 000
Q ss_pred -----C--------------------------------CC----------------------------------------
Q 000684 476 -----D--------------------------------TS---------------------------------------- 478 (1352)
Q Consensus 476 -----~--------------------------------~~---------------------------------------- 478 (1352)
. .+
T Consensus 1000 sphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~t~pl~~ap~p~~~ 1079 (1958)
T KOG0391|consen 1000 SPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVPTQPLLRAPGPVVM 1079 (1958)
T ss_pred CCccccccccchhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCccccccceeeeccccccccccCCCCcce
Confidence 0 00
Q ss_pred -------------CCc---------------------------------h------------------------------
Q 000684 479 -------------IND---------------------------------T------------------------------ 482 (1352)
Q Consensus 479 -------------~~~---------------------------------~------------------------------ 482 (1352)
..+ .
T Consensus 1080 ~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~APvyg~e~l~~c~ 1159 (1958)
T KOG0391|consen 1080 ALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVNAPVYGRELLRICA 1159 (1958)
T ss_pred ecchhhccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHHHHHhhccCcccchhhhhhhc
Confidence 000 0
Q ss_pred -------------------------hhHHHHh------------------------------------------------
Q 000684 483 -------------------------SKLERII------------------------------------------------ 489 (1352)
Q Consensus 483 -------------------------~~l~~li------------------------------------------------ 489 (1352)
+.++.+|
T Consensus 1160 lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~ppp~~~~r~r~~~~qlrsel~p~~~~~ 1239 (1958)
T KOG0391|consen 1160 LPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRPPPLYSHRMRILRQQLRSELAPYFQQR 1239 (1958)
T ss_pred cchhhhccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCCCCcccchHHHHHHHHHHHHhccccchh
Confidence 0000000
Q ss_pred -----------------hhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHH
Q 000684 490 -----------------LSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAM 552 (1352)
Q Consensus 490 -----------------~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~I 552 (1352)
..+||+..|.-||..|+..|||||||+||+.|||+|+.+|.++||.|+||||+++.++||.++
T Consensus 1240 q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLm 1319 (1958)
T KOG0391|consen 1240 QTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALM 1319 (1958)
T ss_pred hccchhhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHH
Confidence 019999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCCCHHHHHHHHHH
Q 000684 553 DHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAK 632 (1352)
Q Consensus 553 d~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~TiEE~Il~ra~ 632 (1352)
++||+ +...|||+|||+.||+||||+.||||||||+||||.+|.||.+|||||||++.|+|||||+.+||||.|+.++.
T Consensus 1320 erFNa-D~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkkan 1398 (1958)
T KOG0391|consen 1320 ERFNA-DRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKKAN 1398 (1958)
T ss_pred HHhcC-CCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhhhh
Confidence 99999 57889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHcc
Q 000684 633 KKMVLDHLVIQK 644 (1352)
Q Consensus 633 ~K~~L~~~vi~~ 644 (1352)
.|..|+..+|+.
T Consensus 1399 qKr~L~evaiqg 1410 (1958)
T KOG0391|consen 1399 QKRMLDEVAIQG 1410 (1958)
T ss_pred HHHHHHHHhhcc
Confidence 999999999995
No 7
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=2e-97 Score=860.26 Aligned_cols=465 Identities=45% Similarity=0.776 Sum_probs=419.0
Q ss_pred cccCCCccCCCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHH
Q 000684 165 LDEQPEWLRGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKE 244 (1352)
Q Consensus 165 ~~~~P~~~~~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~E 244 (1352)
...||..+. ++|+.||+.|+|||+.+|.+|.|||||||||||||+|+|++|++|.+..++.||||||+|.|||.||..|
T Consensus 557 tV~qPkil~-ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWaqE 635 (1185)
T KOG0388|consen 557 TVPQPKILK-CTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWAQE 635 (1185)
T ss_pred eccCchhhh-hhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHHHH
Confidence 346888776 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeEEEEEcCchhHHHHHHHhhhccc-cCCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCCcchH
Q 000684 245 FRKWLPTMNVIVYVGTRASREVCQQYEFYNDK-KVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQ 323 (1352)
Q Consensus 245 f~kw~p~l~vvvy~G~~~~r~~i~~~e~~~~~-~~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN~~Sk 323 (1352)
|.+|+|+++++-|.|+..+|.+++.+ +..+ -..+...|+|+||||+++..|...|++++|+|+|+|||+-||.+.|.
T Consensus 636 isrFlP~~k~lpywGs~~eRkiLrKf--w~rKnmY~rna~fhVviTSYQlvVtDeky~qkvKWQYMILDEAQAIKSSsS~ 713 (1185)
T KOG0388|consen 636 ISRFLPSFKVLPYWGSPSERKILRKF--WNRKNMYRRNAPFHVVITSYQLVVTDEKYLQKVKWQYMILDEAQAIKSSSSS 713 (1185)
T ss_pred HHHhCccceeecCcCChhhhHHHHHh--cchhhhhccCCCceEEEEeeeeeechHHHHHhhhhhheehhHHHHhhhhhhh
Confidence 99999999999999999999988763 2211 12245689999999999999999999999999999999999999999
Q ss_pred HHHHHHcccccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhccc--------ccccHHHHHHHHHhhcchh
Q 000684 324 LYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNL--------SSFNENELANLHMELRPHI 395 (1352)
Q Consensus 324 l~~aL~~l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~--------~~~~~~~i~~L~~~L~p~~ 395 (1352)
.++.|.+|+|++||||||||+||++.|||+||+|++|..|.+.++|.+||..- ...++.++.+||.+|+|||
T Consensus 714 RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~tlneqqL~RLH~ILKPFM 793 (1185)
T KOG0388|consen 714 RWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNTTLNEQQLQRLHAILKPFM 793 (1185)
T ss_pred HHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcCCcCHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999642 2346788999999999999
Q ss_pred hhhhhHhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCC-
Q 000684 396 LRRIIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYG- 474 (1352)
Q Consensus 396 LRR~k~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~- 474 (1352)
|||+|+||...|..|+++.|+|.||.-|+.+|+.|..+.. ...+.+++|+|||+||||-||.-.+....
T Consensus 794 LRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS----------~~E~~~~vmQlrKVCNHPdLFer~e~~s~L 863 (1185)
T KOG0388|consen 794 LRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSIS----------SMEMENLVMQLRKVCNHPDLFERLEPRSGL 863 (1185)
T ss_pred HHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhh----------HHHHHHHHHHHHHhcCChHHHhhcCCccee
Confidence 9999999999999999999999999999999998866542 22345799999999999998743211000
Q ss_pred -----------------------------------------------------------------------CCCCCCc--
Q 000684 475 -----------------------------------------------------------------------GDTSIND-- 481 (1352)
Q Consensus 475 -----------------------------------------------------------------------~~~~~~~-- 481 (1352)
+......
T Consensus 864 ~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e 943 (1185)
T KOG0388|consen 864 SLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGYVFRNVE 943 (1185)
T ss_pred EEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCcccccHH
Confidence 0000000
Q ss_pred -------------------------------------------------------------------------hhhHHHH
Q 000684 482 -------------------------------------------------------------------------TSKLERI 488 (1352)
Q Consensus 482 -------------------------------------------------------------------------~~~l~~l 488 (1352)
...+..+
T Consensus 944 ~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~pLn~~i~~Ppm~~F 1023 (1185)
T KOG0388|consen 944 EAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHIPLNTTIYVPPMNTF 1023 (1185)
T ss_pred HHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCcccccceecCcHHhh
Confidence 0112334
Q ss_pred hhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEee
Q 000684 489 ILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLS 568 (1352)
Q Consensus 489 i~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLS 568 (1352)
+..|||+..||.||.+|++.|||||+|.||++|+|+|++||.++||.|.||||+.+..+|..++.+|+. ++.||||||
T Consensus 1024 itdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~--sdiFvFLLS 1101 (1185)
T KOG0388|consen 1024 ITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQA--SDIFVFLLS 1101 (1185)
T ss_pred hccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccC--CceEEEEEe
Confidence 566999999999999999999999999999999999999999999999999999999999999999998 799999999
Q ss_pred cCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCCCHHHHHHHHHHHHHhhHHHHHcc
Q 000684 569 TRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQK 644 (1352)
Q Consensus 569 TrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~TiEE~Il~ra~~K~~L~~~vi~~ 644 (1352)
|||||+||||++||||||||+||||..|.|||+||||.||++.|+||||++++||||+|+++|.+|-.+-+.|+..
T Consensus 1102 TRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~~vQq~Vm~G 1177 (1185)
T KOG0388|consen 1102 TRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKDEVQQMVMHG 1177 (1185)
T ss_pred cccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999874
No 8
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=3.9e-91 Score=826.40 Aligned_cols=479 Identities=35% Similarity=0.582 Sum_probs=407.7
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHHHHHcCCCeE
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRKWLPTMNV 254 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef~kw~p~l~v 254 (1352)
..|+|||.+||+||..+++++.||||+||||||||+|+|+||+.|.+.....+|+|||||.+++.||..||.+|+|.+.|
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~~~w~p~~rv 283 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEFQTWWPPFRV 283 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHHHHhCcceEE
Confidence 48999999999999999999999999999999999999999999999877789999999999999999999999999999
Q ss_pred EEEEcCchhHHHHHHHh-hhcccc---CCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCCcchHHHHHHHc
Q 000684 255 IVYVGTRASREVCQQYE-FYNDKK---VGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSE 330 (1352)
Q Consensus 255 vvy~G~~~~r~~i~~~e-~~~~~~---~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN~~Skl~~aL~~ 330 (1352)
.+|||+...-.. ..+. .+..+. .......+|+||||+.+......+..+.|+|+|+||+|+|+|++|+++.+++.
T Consensus 284 ~ilh~t~s~~r~-~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDEGH~IrNpns~islackk 362 (923)
T KOG0387|consen 284 FILHGTGSGARY-DASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLGILWDYVILDEGHRIRNPNSKISLACKK 362 (923)
T ss_pred EEEecCCccccc-ccchhhhhhhhhheeeecccCcEEEEehhhhcccCcccccccccEEEecCcccccCCccHHHHHHHh
Confidence 999998763110 0000 000000 01123568999999999999999999999999999999999999999999999
Q ss_pred ccccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhccccccc------H-------HHHHHHHHhhcchhhh
Q 000684 331 FSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFN------E-------NELANLHMELRPHILR 397 (1352)
Q Consensus 331 l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~------~-------~~i~~L~~~L~p~~LR 397 (1352)
+.+.+|++|||||+||||.|||+|+.|+.|+.+++...|.+.|..+...+ . ...-.|+.++.|||||
T Consensus 363 i~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLR 442 (923)
T KOG0387|consen 363 IRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLR 442 (923)
T ss_pred ccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999996542211 1 1244689999999999
Q ss_pred hhhHhhhc-cCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCC
Q 000684 398 RIIKDVEK-SLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGD 476 (1352)
Q Consensus 398 R~k~dv~~-~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~ 476 (1352)
|+|.||.. .||.|.|++|+|.||+.|+.+|...+.... +.....+.. .++.-+.-||++||||-|+.........
T Consensus 443 R~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~--v~~i~ng~~-~~l~Gi~iLrkICnHPdll~~~~~~~~~- 518 (923)
T KOG0387|consen 443 RMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSE--VNKILNGKR-NCLSGIDILRKICNHPDLLDRRDEDEKQ- 518 (923)
T ss_pred HHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHH--HHHHHcCCc-cceechHHHHhhcCCcccccCccccccc-
Confidence 99999998 999999999999999999999999886432 112222222 2344455699999999999874211110
Q ss_pred CCCCchhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHH-hcCCcEEEEeCCCCHHHHHHHHHHh
Q 000684 477 TSINDTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMS-YKGFQFQRLDGSTKAELRHQAMDHF 555 (1352)
Q Consensus 477 ~~~~~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~-~~g~~~~rldGs~~~~eR~~~Id~F 555 (1352)
..+. +..+..||||.+|.+||..++.+|+|||+|||...|||||+.+|. ..||.|+|+||.++.+.|+.+|++|
T Consensus 519 --~~D~---~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~F 593 (923)
T KOG0387|consen 519 --GPDY---EGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRF 593 (923)
T ss_pred --CCCc---CCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhh
Confidence 0111 145678999999999999999999999999999999999999999 6899999999999999999999999
Q ss_pred cCCCCCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCCCHHHHHHHHHHHHH
Q 000684 556 NAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKM 635 (1352)
Q Consensus 556 n~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~TiEE~Il~ra~~K~ 635 (1352)
|+. ...+||||+|++||+|+||+.||+||||||||||++|.||..||+||||++.|.||||++.+||||+||.+|..|.
T Consensus 594 ne~-~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq 672 (923)
T KOG0387|consen 594 NED-ESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFKQ 672 (923)
T ss_pred cCC-CceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHHH
Confidence 984 4568999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHccccccchhhhhhhcchhhHHHHHhcch
Q 000684 636 VLDHLVIQKLNAEGSWRRKKQRKGNELSAILRFGA 670 (1352)
Q Consensus 636 ~L~~~vi~~~~~~g~~~~~~~~~~~el~~il~~ga 670 (1352)
.|...++........| ++.+|.+++.++.
T Consensus 673 ~Ltn~il~~p~q~RfF------~~~dl~dLFsl~~ 701 (923)
T KOG0387|consen 673 FLTNRILKNPEQRRFF------KGNDLHDLFSLKD 701 (923)
T ss_pred HHHHHHhcCHHHhhhc------ccccHHHHhCCCC
Confidence 9999999753322222 2367777776654
No 9
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=2.1e-84 Score=790.19 Aligned_cols=462 Identities=37% Similarity=0.592 Sum_probs=398.7
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcC------CCCcEEEEEChhhHHHHHHHHHHH
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQ------IPGPFLVVVPLSTLSNWAKEFRKW 248 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~------~~gp~LIVvP~s~L~nW~~Ef~kw 248 (1352)
.+||.||.+|||||.++..-+-+|||||+||||||+|+|++++.=....+ ..-|.|||||.++..+|+.|+.++
T Consensus 974 a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 974 AKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhhhHHHHHHHHh
Confidence 68999999999999999989999999999999999999998865443321 346899999999999999999999
Q ss_pred cCCCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCCcchHHHHHH
Q 000684 249 LPTMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTL 328 (1352)
Q Consensus 249 ~p~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN~~Skl~~aL 328 (1352)
+|-++|+.|.|.+..|..+|.. ..+.+|+||+|+.+.+|...|.++.|.|+|+||+|-+||..+++++++
T Consensus 1054 ~pfL~v~~yvg~p~~r~~lR~q----------~~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLDEGHVikN~ktkl~kav 1123 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRELRDQ----------YKNANIIVTSYDVVRNDVDYLIKIDWNYCVLDEGHVIKNSKTKLTKAV 1123 (1549)
T ss_pred cchhhhhhhcCChHHHHHHHhh----------ccccceEEeeHHHHHHHHHHHHhcccceEEecCcceecchHHHHHHHH
Confidence 9999999999999999877652 236799999999999999999999999999999999999999999999
Q ss_pred HcccccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhccccc-------------ccHHHHHHHHHhhcchh
Q 000684 329 SEFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSS-------------FNENELANLHMELRPHI 395 (1352)
Q Consensus 329 ~~l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~-------------~~~~~i~~L~~~L~p~~ 395 (1352)
+++.+.+||+|||||+|||+.|||+|++||||+.+++...|.+.|....- .+.-.+..||+.+-|||
T Consensus 1124 kqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~ 1203 (1549)
T KOG0392|consen 1124 KQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFL 1203 (1549)
T ss_pred HHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999965311 11234788999999999
Q ss_pred hhhhhHhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhh---ccc---cC-chhhHHHHHHHHHHhcCCcccccc
Q 000684 396 LRRIIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLN---KGV---RG-NQVSLLNIVVELKKCCNHPFLFES 468 (1352)
Q Consensus 396 LRR~k~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~---~~~---~~-~~~~llnil~~Lrk~cnHP~L~~~ 468 (1352)
|||+|.||.++||||..+-.+|+|++.|+++|+.+..+...... .+. .+ ....+++.+.-|||.||||.|+-+
T Consensus 1204 LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt 1283 (1549)
T KOG0392|consen 1204 LRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLT 1283 (1549)
T ss_pred HHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeC
Confidence 99999999999999999999999999999999999888222111 111 11 145688999999999999999865
Q ss_pred ccCCCCCC--CCCCchhhHHHHhhhcchhHHHHHHHHHhh--------------hcCCeEEEEecchhHHHHHHHHHHhc
Q 000684 469 ADHGYGGD--TSINDTSKLERIILSSGKLVILDKLLVRLH--------------ETKHRVLIFSQMVRMLDILAEYMSYK 532 (1352)
Q Consensus 469 ~e~~~~~~--~~~~~~~~l~~li~~SgKl~~L~kLL~~l~--------------~~g~KVLIFSq~~~~ldiL~d~L~~~ 532 (1352)
.....-.. ........--+-+..|+|+.+|.+||...- -.+||+|||||+..|+|++++-|-..
T Consensus 1284 ~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~ 1363 (1549)
T KOG0392|consen 1284 PVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKK 1363 (1549)
T ss_pred CCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhh
Confidence 32110000 000001111123678999999999998763 15799999999999999999988654
Q ss_pred ---CCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCC
Q 000684 533 ---GFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQ 609 (1352)
Q Consensus 533 ---g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQk 609 (1352)
.+.|.||||++++.+|++++.+||++.+.+ |+||+|.+||+|+||++||||||++-||||.+|+|||+|||||||+
T Consensus 1364 ~mpsVtymRLDGSVpp~~R~kiV~~FN~DptID-vLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQK 1442 (1549)
T KOG0392|consen 1364 YMPSVTYMRLDGSVPPGDRQKIVERFNEDPTID-VLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQK 1442 (1549)
T ss_pred hcCceeEEEecCCCCcHHHHHHHHHhcCCCcee-EEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCc
Confidence 677999999999999999999999976554 7999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEecCCCHHHHHHHHHHHHHhhHHHHHccccc
Q 000684 610 EVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNA 647 (1352)
Q Consensus 610 k~V~VyrLvt~~TiEE~Il~ra~~K~~L~~~vi~~~~~ 647 (1352)
+.|+||||||+||+||+|+..|+-||..++.||+.-|+
T Consensus 1443 rvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqNa 1480 (1549)
T KOG0392|consen 1443 RVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQNA 1480 (1549)
T ss_pred eeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhcccc
Confidence 99999999999999999999999999999999986443
No 10
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=1.8e-77 Score=727.62 Aligned_cols=545 Identities=43% Similarity=0.692 Sum_probs=459.5
Q ss_pred CcceEEEEecCCccccccccchhhhhcccchHHHHHHHhhhhHhhh--hhcc---CChhHHhhhhhhhhhh-hHHhhhcC
Q 000684 12 NEMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYAKKVVEDVR--FRKM---VSREEIELNDVSKEMD-LDIIKQNS 85 (1352)
Q Consensus 12 ~~~eyLVKWkg~SylH~tW~s~~~L~~~~g~kk~~n~~kk~~~~~~--~~~~---~~~ed~e~~~~~~e~~-~~~~~~~~ 85 (1352)
.+.||+|||+|.||+||.|.++..++..-.- ...+|......+.. ..-. ....++.+-++..... .-+-++|.
T Consensus 131 ~~re~~vk~qg~s~~~c~~~~e~~~q~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~a~~~~r~~~~~iKpe~~ 209 (696)
T KOG0383|consen 131 VEREFFVKWQGLSYWHCSWKSELLLQNPLNT-LPVELQRKHDTDQKPEAEIGVTRDKGKLVPYADLEERFLLYGIKPEWM 209 (696)
T ss_pred hhhhcccccccCCccchhHHHHHHhhhhccc-chHhhhhhhhcccCccccccccccCccccccccchhhhhheecccccc
Confidence 5689999999999999999998888643211 11222222111111 0000 1111111111111111 11236899
Q ss_pred cccceeeeeccCCCCCCcceeEEEecCCCCcccccccccc-cchhHHHHHHHHHHHHHHHhhhcchhhhhhhhccccccc
Q 000684 86 QVERIIADRISKDSSGNVTQEYLVKWKGLSYAEATWEKDE-IIDFAQDAIDEYKAREAAMAEQGKMVDLQRKKGKASLRK 164 (1352)
Q Consensus 86 ~veRIi~~r~~~~~~~~~~~~YLVKW~gL~Y~~~TWE~~~-~i~~~~~~i~~y~~r~~~~~~~~~~~~~~r~~~~~~~~~ 164 (1352)
.+.|||+++... ...+.|+|||+.|+|++|+||... ++...+..+.+|..-... ...++.+.. ........
T Consensus 210 ~i~rii~~~~s~----~~~~~~~Vk~k~l~~d~~~~e~~~~~ip~~~~~~qe~~~~~~~-~~~~k~~~~---~~~~~~v~ 281 (696)
T KOG0383|consen 210 PIARIINRRSSQ----KGATDYLVKWKELSYDEQEWEVEDPDIPGYSSAGQEAWHHREK-PTVSKDLKS---NTVDDPVP 281 (696)
T ss_pred ccchhhhhhccc----ccceeeEeeeccCCccccCCCcCCCCcccCcccccccccccCc-ccccccccc---cccCCCCC
Confidence 999999998542 234689999999999999999976 666667777776642221 111111111 12234667
Q ss_pred cccCCCccC--CCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHH
Q 000684 165 LDEQPEWLR--GGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWA 242 (1352)
Q Consensus 165 ~~~~P~~~~--~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~ 242 (1352)
+..||.++. ++.|.+||++|+||+...|..+..+|||||||+|||+|++.|+..+.......+|+||++|.+++.+|.
T Consensus 282 ~~~qP~~l~~~~g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~nwe 361 (696)
T KOG0383|consen 282 YEDQPQFLTEPGGTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIVNWE 361 (696)
T ss_pred cccCCccccCCCccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccccCCC
Confidence 788999997 589999999999999999999999999999999999999999999999888889999999999999999
Q ss_pred HHHHHHcCCCeEEEEEcCchhHHHHHHHhhhccccC------------CCCccccEEEecHHHHHhhHhhhhccCcceEe
Q 000684 243 KEFRKWLPTMNVIVYVGTRASREVCQQYEFYNDKKV------------GRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLM 310 (1352)
Q Consensus 243 ~Ef~kw~p~l~vvvy~G~~~~r~~i~~~e~~~~~~~------------~~~~kf~VlItTye~l~~d~~~L~~i~w~~lI 310 (1352)
+|+..|+|++.++.|+|+...|.+++++++...+.. ....+|+|.+++|+++..+...+..+.|.++|
T Consensus 362 ~e~~~wap~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~il~~v~w~~li 441 (696)
T KOG0383|consen 362 REFELWAPSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQSILFSVQWGLLI 441 (696)
T ss_pred CchhccCCCcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCHHHHhhhhcceeE
Confidence 999999999999999999999999999999876542 24468999999999999999999999999999
Q ss_pred cchhcccCCcchHHHHHHHcccccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHh
Q 000684 311 VDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHME 390 (1352)
Q Consensus 311 VDEAHrlKN~~Skl~~aL~~l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~ 390 (1352)
+||+||+||..|+++..+..+...+++||||||+|||+.||++||+||.|+.|.+.+.|.+.|..+. .+..+..||.+
T Consensus 442 vde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~~--~~~~~~~l~~l 519 (696)
T KOG0383|consen 442 VDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDIS--CEEQIKKLHLL 519 (696)
T ss_pred eechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchhh--HHHHHHhhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998765 47889999999
Q ss_pred hcchhhhhhhHhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCcccccccc
Q 000684 391 LRPHILRRIIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESAD 470 (1352)
Q Consensus 391 L~p~~LRR~k~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e 470 (1352)
+.|+||||.+.||.+.+|+|+|.+++++|+++|+++|+.|+++++..+.. .+.+.+++|++|+|+|||||||++...+
T Consensus 520 ~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~--~~~~~s~~n~~mel~K~~~hpy~~~~~e 597 (696)
T KOG0383|consen 520 LCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA--GVHQYSLLNIVMELRKQCNHPYLSPLEE 597 (696)
T ss_pred cCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhh--cchhHHHHHHHHHHHHhhcCcccCcccc
Confidence 99999999999999999999999999999999999999999999999988 5678899999999999999999999833
Q ss_pred CCCCCCCCCCchhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHH
Q 000684 471 HGYGGDTSINDTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQ 550 (1352)
Q Consensus 471 ~~~~~~~~~~~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~ 550 (1352)
+.. .........++.+|||+.+|.+++++++..|||||||+||+.|+|+|++||...+ .|.|+||.++..+|+.
T Consensus 598 ~~~-----~~~~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ 671 (696)
T KOG0383|consen 598 PLE-----ENGEYLGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQA 671 (696)
T ss_pred ccc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhh
Confidence 322 2334455778999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHhcCCCCCCcEEEeecCCCccC
Q 000684 551 AMDHFNAPGSEDFCFLLSTRAGGLG 575 (1352)
Q Consensus 551 ~Id~Fn~~~s~~~vfLLSTrAgg~G 575 (1352)
+|++||++++..||||+||||||+|
T Consensus 672 ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 672 AIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred hccccCCCCccceEEEeecccccCC
Confidence 9999999999999999999999998
No 11
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=2e-73 Score=697.02 Aligned_cols=461 Identities=34% Similarity=0.505 Sum_probs=387.0
Q ss_pred CCCCcHHHHHHHHHHHHHhc------CCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCC-----CCcEEEEEChhhHHHHH
Q 000684 174 GGKLRDYQLEGLNFLVNSWR------NDTNVILADEMGLGKTVQSVSMLGFLQNAQQI-----PGPFLVVVPLSTLSNWA 242 (1352)
Q Consensus 174 ~~~Lr~yQlegvnwL~~~~~------~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~-----~gp~LIVvP~s~L~nW~ 242 (1352)
...|||||.+|++||..+.. ...|||+||+||+|||+|+|+||..+...... .+| |||||.++|.||.
T Consensus 236 ~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~-lVV~P~sLv~nWk 314 (776)
T KOG0390|consen 236 KKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKP-LVVAPSSLVNNWK 314 (776)
T ss_pred hhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCcccccccc-EEEccHHHHHHHH
Confidence 45899999999999988763 44689999999999999999999999988776 444 9999999999999
Q ss_pred HHHHHHcC--CCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCCc
Q 000684 243 KEFRKWLP--TMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNS 320 (1352)
Q Consensus 243 ~Ef~kw~p--~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN~ 320 (1352)
+||.+|.. .++...+.|...+. .+....+... .......-|++.+|+++..+...+....+++||+||+|++||.
T Consensus 315 kEF~KWl~~~~i~~l~~~~~~~~~-w~~~~sil~~--~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHrlkN~ 391 (776)
T KOG0390|consen 315 KEFGKWLGNHRINPLDFYSTKKSS-WIKLKSILFL--GYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHRLKNS 391 (776)
T ss_pred HHHHHhccccccceeeeecccchh-hhhhHHHHHh--hhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCCccch
Confidence 99999986 57777777777651 1111111100 1123456789999999999999999999999999999999999
Q ss_pred chHHHHHHHcccccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccc------------cHHHHHHHH
Q 000684 321 EAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSF------------NENELANLH 388 (1352)
Q Consensus 321 ~Skl~~aL~~l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~------------~~~~i~~L~ 388 (1352)
.+.++++|..+.+++|+||||||+|||+.|+|++|+|+.|+.+++...|...|...... .+..++.|.
T Consensus 392 ~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~ 471 (776)
T KOG0390|consen 392 DSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQELR 471 (776)
T ss_pred hhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998654221 123478899
Q ss_pred HhhcchhhhhhhHhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCcccccc
Q 000684 389 MELRPHILRRIIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFES 468 (1352)
Q Consensus 389 ~~L~p~~LRR~k~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~ 468 (1352)
.+...|++||+-....++||++.+++|.|.+|+.|+.+|+.++...... ...+. .+..+..|+++||||+|+..
T Consensus 472 ~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~---~~~~~---~l~~~~~L~k~cnhP~L~~~ 545 (776)
T KOG0390|consen 472 ELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMR---TLKGY---ALELITKLKKLCNHPSLLLL 545 (776)
T ss_pred HHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhh---hhhcc---hhhHHHHHHHHhcCHHhhcc
Confidence 9999999999999999999999999999999999999999998864111 11122 56677889999999999862
Q ss_pred ccCCCCCCCCCCchhh-------HH-HHhhhcchhHHHHHHHHHhhhc-CCeEEEEecchhHHHHHHHHHHhcCCcEEEE
Q 000684 469 ADHGYGGDTSINDTSK-------LE-RIILSSGKLVILDKLLVRLHET-KHRVLIFSQMVRMLDILAEYMSYKGFQFQRL 539 (1352)
Q Consensus 469 ~e~~~~~~~~~~~~~~-------l~-~li~~SgKl~~L~kLL~~l~~~-g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rl 539 (1352)
.+.............. +. .-..-|||+..|..||...++. -.++.+.|+++.++|+++..+..+|+.++||
T Consensus 546 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rL 625 (776)
T KOG0390|consen 546 CEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRL 625 (776)
T ss_pred cccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEE
Confidence 2221110000000000 00 1122489999999999666543 3567777788899999999999999999999
Q ss_pred eCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEec
Q 000684 540 DGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVT 619 (1352)
Q Consensus 540 dGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt 619 (1352)
||+|+..+|+.+|+.||+|.+..||||+|++|||+||||.+|++||+||+||||.++.|||+||+|.||+++|+||||++
T Consensus 626 dG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLla 705 (776)
T KOG0390|consen 626 DGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLA 705 (776)
T ss_pred cCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhHHHHHcc
Q 000684 620 SKSVEEDILERAKKKMVLDHLVIQK 644 (1352)
Q Consensus 620 ~~TiEE~Il~ra~~K~~L~~~vi~~ 644 (1352)
.||+||+||+|+..|..|...|++.
T Consensus 706 tGtiEEk~~qrq~~K~~lS~~v~~~ 730 (776)
T KOG0390|consen 706 TGTIEEKIYQRQTHKEGLSSMVFDE 730 (776)
T ss_pred CCCchHHHHHHHHHhhhhhheEEec
Confidence 9999999999999999999999985
No 12
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=3.1e-68 Score=631.04 Aligned_cols=481 Identities=30% Similarity=0.493 Sum_probs=388.2
Q ss_pred CCCcHHHHHHHHHHHHHh---------cCCCcEEEEcCCCCcHHHHHHHHHHHHHHhc-CCCCcEEEEEChhhHHHHHHH
Q 000684 175 GKLRDYQLEGLNFLVNSW---------RNDTNVILADEMGLGKTVQSVSMLGFLQNAQ-QIPGPFLVVVPLSTLSNWAKE 244 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~---------~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~-~~~gp~LIVvP~s~L~nW~~E 244 (1352)
.+|+|||..||.||..+. ..|.|||||+-||||||+|+|+||..++... -....+|||||++++.||.+|
T Consensus 667 ~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~NW~~E 746 (1567)
T KOG1015|consen 667 IKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTALNWMNE 746 (1567)
T ss_pred hhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHHHHHHHH
Confidence 589999999999997654 3577999999999999999999998876543 335679999999999999999
Q ss_pred HHHHcCCCe----EEEEE-cC---chhHHHHHHHhhhccccCCCCccccEEEecHHHHHhh---------------Hhhh
Q 000684 245 FRKWLPTMN----VIVYV-GT---RASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKD---------------KAVL 301 (1352)
Q Consensus 245 f~kw~p~l~----vvvy~-G~---~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d---------------~~~L 301 (1352)
|.+|.+++. +-||. ++ ...|.. ....|.. .-.|+|.-|+++..- ...|
T Consensus 747 FekWm~~~e~~~~leV~eL~~vkr~e~R~~-~L~~W~~--------~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~l 817 (1567)
T KOG1015|consen 747 FEKWMEGLEDDEKLEVSELATVKRPEERSY-MLQRWQE--------DGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKAL 817 (1567)
T ss_pred HHHhcccccccccceeehhhhccChHHHHH-HHHHHHh--------cCCEEEEehHHHHHHhcccchhhhHHHHHHHHhc
Confidence 999998632 22332 11 122221 1112322 237999999988642 1223
Q ss_pred hccCcceEecchhcccCCcchHHHHHHHcccccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccH
Q 000684 302 SKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNE 381 (1352)
Q Consensus 302 ~~i~w~~lIVDEAHrlKN~~Skl~~aL~~l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~ 381 (1352)
..-..++||+||||-|||..+.+++++..+.+.+||+||||||||||.|++++++|+.|+.+++..+|...|.++...+.
T Consensus 818 vdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvNpI~nGq 897 (1567)
T KOG1015|consen 818 VDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFVNPIQNGQ 897 (1567)
T ss_pred cCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhcCccccCc
Confidence 34478999999999999999999999999999999999999999999999999999999999999999999987643221
Q ss_pred -------------HHHHHHHHhhcchhhhhhhHhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhc---cccCc
Q 000684 382 -------------NELANLHMELRPHILRRIIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNK---GVRGN 445 (1352)
Q Consensus 382 -------------~~i~~L~~~L~p~~LRR~k~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~---~~~~~ 445 (1352)
....-|+..|..++-|+--..+.+.||||.+++|.|.||+.|..+|...++ ....... |.+|.
T Consensus 898 ~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~-h~~~~G~d~eg~~g~ 976 (1567)
T KOG1015|consen 898 CADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLD-HLTGVGNDSEGGRGA 976 (1567)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHh-hccccCCccccccch
Confidence 224568899999999999999999999999999999999999999999988 3222211 22345
Q ss_pred hhhHHHHHHHHHHhcCCccccccc-------------c-CCCC---------------------------------CCCC
Q 000684 446 QVSLLNIVVELKKCCNHPFLFESA-------------D-HGYG---------------------------------GDTS 478 (1352)
Q Consensus 446 ~~~llnil~~Lrk~cnHP~L~~~~-------------e-~~~~---------------------------------~~~~ 478 (1352)
...|+....-|+++.+|||..... + ..+. +...
T Consensus 977 ~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks~~~s~~Desss~~~~ 1056 (1567)
T KOG1015|consen 977 GARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKKSGKKSKKDESSSGSGS 1056 (1567)
T ss_pred hhhHHHHHHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhccccccccccccccccccc
Confidence 567899999999999999975210 0 0000 0000
Q ss_pred CC---------------------------c--------------------hhhHHH--------HhhhcchhHHHHHHHH
Q 000684 479 IN---------------------------D--------------------TSKLER--------IILSSGKLVILDKLLV 503 (1352)
Q Consensus 479 ~~---------------------------~--------------------~~~l~~--------li~~SgKl~~L~kLL~ 503 (1352)
.. + .+.... .+..||||.+|.+||.
T Consensus 1057 ~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmiLLleIL~ 1136 (1567)
T KOG1015|consen 1057 DGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKMILLLEILR 1136 (1567)
T ss_pred CCchhhhhhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhhhhhhcCcceehHHHHHH
Confidence 00 0 000001 2345999999999999
Q ss_pred HhhhcCCeEEEEecchhHHHHHHHHHHh----------------------cCCcEEEEeCCCCHHHHHHHHHHhcCCCCC
Q 000684 504 RLHETKHRVLIFSQMVRMLDILAEYMSY----------------------KGFQFQRLDGSTKAELRHQAMDHFNAPGSE 561 (1352)
Q Consensus 504 ~l~~~g~KVLIFSq~~~~ldiL~d~L~~----------------------~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~ 561 (1352)
...+-|.|+|||||....||+|++||.. +|..|.||||+++..+|++..++||+|.+-
T Consensus 1137 mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~Nl 1216 (1567)
T KOG1015|consen 1137 MCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNL 1216 (1567)
T ss_pred HHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccc
Confidence 9999999999999999999999999962 367899999999999999999999998654
Q ss_pred C-cEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCCCHHHHHHHHHHHHHhhHHH
Q 000684 562 D-FCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHL 640 (1352)
Q Consensus 562 ~-~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~TiEE~Il~ra~~K~~L~~~ 640 (1352)
. .+||||||||++||||.+|++|||||..|||..|.|+|-|++|.||+|+|+||||++.||+||+||.|+-.|..++..
T Consensus 1217 RaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQVTKqsls~R 1296 (1567)
T KOG1015|consen 1217 RARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQVTKQSLSFR 1296 (1567)
T ss_pred eeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHHHhHhhhhhh
Confidence 3 689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccccccchhhhhhhcchhhHHHHHhcchH
Q 000684 641 VIQKLNAEGSWRRKKQRKGNELSAILRFGAE 671 (1352)
Q Consensus 641 vi~~~~~~g~~~~~~~~~~~el~~il~~ga~ 671 (1352)
||+.-....+ ..++||..|..|...
T Consensus 1297 VVDeqQv~Rh------y~~neLteLy~fep~ 1321 (1567)
T KOG1015|consen 1297 VVDEQQVERH------YTMNELTELYTFEPD 1321 (1567)
T ss_pred hhhHHHHHHH------hhHhhhHHHhhcCCc
Confidence 9986333333 345899999887654
No 13
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=5.8e-67 Score=686.49 Aligned_cols=472 Identities=42% Similarity=0.654 Sum_probs=411.5
Q ss_pred cCCC-ccCCCCCcHHHHHHHHHHH-HHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCC-CCcEEEEEChhhHHHHHH
Q 000684 167 EQPE-WLRGGKLRDYQLEGLNFLV-NSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQI-PGPFLVVVPLSTLSNWAK 243 (1352)
Q Consensus 167 ~~P~-~~~~~~Lr~yQlegvnwL~-~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~-~gp~LIVvP~s~L~nW~~ 243 (1352)
..|. ......|+|||++|++|+. ..+..+.+|||||+||||||+|+|+++.++...... .+|+|||||.+++.||.+
T Consensus 328 ~~~~~~~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~ 407 (866)
T COG0553 328 NAPEPVDLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKR 407 (866)
T ss_pred ccCchhhhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHH
Confidence 3443 3345789999999999999 888899999999999999999999999986666555 589999999999999999
Q ss_pred HHHHHcCCCe-EEEEEcCchh----HHHHHHHhhhccccCCCCccccEEEecHHHHHh---hHhhhhccCcceEecchhc
Q 000684 244 EFRKWLPTMN-VIVYVGTRAS----REVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLK---DKAVLSKIKWNYLMVDEAH 315 (1352)
Q Consensus 244 Ef~kw~p~l~-vvvy~G~~~~----r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~---d~~~L~~i~w~~lIVDEAH 315 (1352)
||.+|+|.++ +.+++|.... +.....+.... ....+++++|||+.+.. +...+..+.|+++|+||||
T Consensus 408 e~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~ 482 (866)
T COG0553 408 EFEKFAPDLRLVLVYHGEKSELDKKREALRDLLKLH-----LVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAH 482 (866)
T ss_pred HHhhhCccccceeeeeCCcccccHHHHHHHHHhhhc-----ccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHH
Confidence 9999999999 9999998863 44444332110 02358999999999999 9999999999999999999
Q ss_pred ccCCcchHHHHHHHcccccCeEEEeccCCCCCHHHHHHHHh-hcCCCCCC-ChhHHHHHhccccccc---------HHHH
Q 000684 316 RLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLH-FLDHDKFK-SKDDFIQNYKNLSSFN---------ENEL 384 (1352)
Q Consensus 316 rlKN~~Skl~~aL~~l~~~~rlLLTGTPlqNnl~EL~sLL~-fL~p~~f~-~~~~F~~~f~~~~~~~---------~~~i 384 (1352)
++||..+..+++++.+++.++++|||||++|++.|||+|++ |++|..++ +...|..+|....... ...+
T Consensus 483 ~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 562 (866)
T COG0553 483 RIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGI 562 (866)
T ss_pred HHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHH
Confidence 99999999999999999999999999999999999999999 99999999 5588999987643221 2345
Q ss_pred HHHHHhhcchhhhhhhHh--hhccCCCcEEEEEEecCCHHHHHHHHHHHH---HhHHhhhccccC---------chhhHH
Q 000684 385 ANLHMELRPHILRRIIKD--VEKSLPPKIERILRVEMSPLQKQYYKWILE---RNFHDLNKGVRG---------NQVSLL 450 (1352)
Q Consensus 385 ~~L~~~L~p~~LRR~k~d--v~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~---~~~~~l~~~~~~---------~~~~ll 450 (1352)
..|+.++.||++||++.+ +...||++.+.++.|.|+..|..+|...+. ++...+...... ....++
T Consensus 563 ~~l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 642 (866)
T COG0553 563 ELLRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNIL 642 (866)
T ss_pred HHHHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHH
Confidence 558999999999999999 899999999999999999999999999999 666655443222 267899
Q ss_pred HHHHHHHHhcCCccccccc-cCCCCCCCC-----CCchhhHHHHhhhc-chhHHHHHHH-HHhhhcCC--eEEEEecchh
Q 000684 451 NIVVELKKCCNHPFLFESA-DHGYGGDTS-----INDTSKLERIILSS-GKLVILDKLL-VRLHETKH--RVLIFSQMVR 520 (1352)
Q Consensus 451 nil~~Lrk~cnHP~L~~~~-e~~~~~~~~-----~~~~~~l~~li~~S-gKl~~L~kLL-~~l~~~g~--KVLIFSq~~~ 520 (1352)
+.++.||++|+||+++... +........ .........++..| +|+..++++| ..+...|+ +|||||||+.
T Consensus 643 ~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~ 722 (866)
T COG0553 643 ALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTP 722 (866)
T ss_pred HHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHH
Confidence 9999999999999999865 322211100 01112224567788 9999999999 89999999 9999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHh
Q 000684 521 MLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAM 600 (1352)
Q Consensus 521 ~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAi 600 (1352)
|+++|+++|...++.|+++||+++...|+.+|++|+++ +..+|||+|++|||+||||++|++||+||++|||+.+.||+
T Consensus 723 ~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~-~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~ 801 (866)
T COG0553 723 VLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNAD-EEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAI 801 (866)
T ss_pred HHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcC-CCCceEEEEecccccceeecccceEEEeccccChHHHHHHH
Confidence 99999999999999999999999999999999999996 66789999999999999999999999999999999999999
Q ss_pred hhhcccCCCceEEEEEEecCCCHHHHHHHHHHHHHhhHHHHHcc
Q 000684 601 SRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQK 644 (1352)
Q Consensus 601 gRahRiGQkk~V~VyrLvt~~TiEE~Il~ra~~K~~L~~~vi~~ 644 (1352)
+|||||||+++|.||+|++++|+||+|++++..|+.+...+++.
T Consensus 802 dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~ 845 (866)
T COG0553 802 DRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDA 845 (866)
T ss_pred HHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999984
No 14
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=6.8e-65 Score=573.13 Aligned_cols=464 Identities=31% Similarity=0.513 Sum_probs=373.8
Q ss_pred cccccCCCccCCCCCcHHHHHHHHHHHHHhc-CCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHH
Q 000684 163 RKLDEQPEWLRGGKLRDYQLEGLNFLVNSWR-NDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNW 241 (1352)
Q Consensus 163 ~~~~~~P~~~~~~~Lr~yQlegvnwL~~~~~-~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW 241 (1352)
.+-.+||.-+. ..|-|||++|+.|+...-. .-.|||||||||+|||+|+||++.. .-...|.|||||.-.+.||
T Consensus 172 ~e~aeqP~dli-i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLlla----e~~ra~tLVvaP~VAlmQW 246 (791)
T KOG1002|consen 172 AERAEQPDDLI-IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLA----EVDRAPTLVVAPTVALMQW 246 (791)
T ss_pred hhcccCcccce-ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHh----ccccCCeeEEccHHHHHHH
Confidence 33456777665 6899999999999986544 4568999999999999999998854 2335689999999999999
Q ss_pred HHHHHHHcC-CCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHh-----------------hHhhhhc
Q 000684 242 AKEFRKWLP-TMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLK-----------------DKAVLSK 303 (1352)
Q Consensus 242 ~~Ef~kw~p-~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~-----------------d~~~L~~ 303 (1352)
.+|+.+++. .+++.+|||.+.....- ....++||+|||.++-. ..+.|..
T Consensus 247 ~nEI~~~T~gslkv~~YhG~~R~~nik------------el~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHs 314 (791)
T KOG1002|consen 247 KNEIERHTSGSLKVYIYHGAKRDKNIK------------ELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHS 314 (791)
T ss_pred HHHHHHhccCceEEEEEecccccCCHH------------HhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhh
Confidence 999999984 58999999987554321 22368999999988743 2467889
Q ss_pred cCcceEecchhcccCCcchHHHHHHHcccccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCCh---------hHH-----
Q 000684 304 IKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSK---------DDF----- 369 (1352)
Q Consensus 304 i~w~~lIVDEAHrlKN~~Skl~~aL~~l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~---------~~F----- 369 (1352)
++|..||+||||.+|+..|...+++..+.+.+||+|||||+||.+.|||+|+.||..+.|.-. -+|
T Consensus 315 i~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr 394 (791)
T KOG1002|consen 315 IKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDR 394 (791)
T ss_pred ceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeeccc
Confidence 999999999999999999999999999999999999999999999999999999998876321 000
Q ss_pred ----------------HHHh--ccccc-----ccHHHHHHHHHhhcchhhhhhhHhhhc--cCCCcEEEEEEecCCHHHH
Q 000684 370 ----------------IQNY--KNLSS-----FNENELANLHMELRPHILRRIIKDVEK--SLPPKIERILRVEMSPLQK 424 (1352)
Q Consensus 370 ----------------~~~f--~~~~~-----~~~~~i~~L~~~L~p~~LRR~k~dv~~--~LPpk~e~iv~v~Ls~~Qk 424 (1352)
...| ..+.. -+.......|.+|+.+||||+|-+-.. .|||....+-+--++..+.
T Consensus 395 ~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~ 474 (791)
T KOG1002|consen 395 MHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEK 474 (791)
T ss_pred ccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhHHH
Confidence 0000 00000 112345578999999999999876433 4899988777778899999
Q ss_pred HHHHHHHHHhHHhhhc----c-ccCchhhHHHHHHHHHHhcCCccccccc-cC------------CCCCCC---------
Q 000684 425 QYYKWILERNFHDLNK----G-VRGNQVSLLNIVVELKKCCNHPFLFESA-DH------------GYGGDT--------- 477 (1352)
Q Consensus 425 ~~Yk~il~~~~~~l~~----~-~~~~~~~llnil~~Lrk~cnHP~L~~~~-e~------------~~~~~~--------- 477 (1352)
.+|+.+........+. | .-.+...++.++.+||++..||||+--. .. +...+.
T Consensus 475 D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~i~s~C 554 (791)
T KOG1002|consen 475 DLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDPAEDYIESSC 554 (791)
T ss_pred HHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeecccCChhhhhHhhhh
Confidence 9999988765443332 2 2346678899999999999999997321 00 000000
Q ss_pred --------------------------------------CC--Cc------hhhHHHH----hhhcchhHHHHHHHHHhhh
Q 000684 478 --------------------------------------SI--ND------TSKLERI----ILSSGKLVILDKLLVRLHE 507 (1352)
Q Consensus 478 --------------------------------------~~--~~------~~~l~~l----i~~SgKl~~L~kLL~~l~~ 507 (1352)
.. .+ ...+.++ ..+|.|+.+|.+-|..+.+
T Consensus 555 hH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~ 634 (791)
T KOG1002|consen 555 HHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIEALVEELYFLRE 634 (791)
T ss_pred hHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHHHHHHH
Confidence 00 00 0011111 3469999999998888876
Q ss_pred cC--CeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEEE
Q 000684 508 TK--HRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVI 585 (1352)
Q Consensus 508 ~g--~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVI 585 (1352)
.. -|.||||||+.|||+|.-.|...|+.++.|+|+|+...|..+|+.|.+ +-++.|||+|.+|||+.+||+.|+.|+
T Consensus 635 rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~n-d~~c~vfLvSLkAGGVALNLteASqVF 713 (791)
T KOG1002|consen 635 RDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKN-DIDCRVFLVSLKAGGVALNLTEASQVF 713 (791)
T ss_pred cccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhcc-CCCeEEEEEEeccCceEeeechhceeE
Confidence 54 488999999999999999999999999999999999999999999987 456789999999999999999999999
Q ss_pred EcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCCCHHHHHHHHHHHHHhhHHHHHcc
Q 000684 586 IFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQK 644 (1352)
Q Consensus 586 i~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~TiEE~Il~ra~~K~~L~~~vi~~ 644 (1352)
++||+|||....||++|+|||||.++|.|.||+.++||||+|++.+++|..+.++.|+.
T Consensus 714 mmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~q 772 (791)
T KOG1002|consen 714 MMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQ 772 (791)
T ss_pred eecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999873
No 15
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.5e-63 Score=583.26 Aligned_cols=467 Identities=28% Similarity=0.454 Sum_probs=386.4
Q ss_pred ccccccCCCccCCCCCcHHHHHHHHHHHHHhc-CCCcEEEEcCCCCcHHHHHHHHHHHHHHhc-------CCCCcEEEEE
Q 000684 162 LRKLDEQPEWLRGGKLRDYQLEGLNFLVNSWR-NDTNVILADEMGLGKTVQSVSMLGFLQNAQ-------QIPGPFLVVV 233 (1352)
Q Consensus 162 ~~~~~~~P~~~~~~~Lr~yQlegvnwL~~~~~-~~~~~ILADEmGLGKTlqaIa~l~~L~~~~-------~~~gp~LIVv 233 (1352)
-..+.+.|.-+. ..|.|||..|+.||+..-. .+.+|||||+||||||++.|+++..-.... ....++||||
T Consensus 312 et~lte~P~g~~-v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~ 390 (901)
T KOG4439|consen 312 ETDLTETPDGLK-VELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIIC 390 (901)
T ss_pred cccccCCCCcce-eecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeC
Confidence 344566676554 6899999999999985433 355899999999999999999987765432 1223699999
Q ss_pred ChhhHHHHHHHHHHHcC--CCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHh----------hHhhh
Q 000684 234 PLSTLSNWAKEFRKWLP--TMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLK----------DKAVL 301 (1352)
Q Consensus 234 P~s~L~nW~~Ef~kw~p--~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~----------d~~~L 301 (1352)
|.|++.||..|+.+-.- -+.|.+|||+.. |.+ .. ....+||||||||..+.. ....|
T Consensus 391 PaSli~qW~~Ev~~rl~~n~LsV~~~HG~n~-r~i-~~---------~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL 459 (901)
T KOG4439|consen 391 PASLIHQWEAEVARRLEQNALSVYLYHGPNK-REI-SA---------KELRKYDVVITTYNLVANKPDDELEEGKNSSPL 459 (901)
T ss_pred cHHHHHHHHHHHHHHHhhcceEEEEecCCcc-ccC-CH---------HHHhhcceEEEeeeccccCCchhhhcccCccHH
Confidence 99999999999998764 378999999985 221 11 122479999999998876 34678
Q ss_pred hccCcceEecchhcccCCcchHHHHHHHcccccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccH
Q 000684 302 SKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNE 381 (1352)
Q Consensus 302 ~~i~w~~lIVDEAHrlKN~~Skl~~aL~~l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~ 381 (1352)
..|.|.+||+||||.+||..++...+++.+.+.+||+|||||+|||+.|+|+|+.||....|++...|.++..+.....
T Consensus 460 ~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s~~g- 538 (901)
T KOG4439|consen 460 ARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMSKGG- 538 (901)
T ss_pred HHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCccccc-
Confidence 8999999999999999999999999999999999999999999999999999999999999999988888877655433
Q ss_pred HHHHHHHHhhcchhhhhhhHhhhc-----cCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhc------------cc--
Q 000684 382 NELANLHMELRPHILRRIIKDVEK-----SLPPKIERILRVEMSPLQKQYYKWILERNFHDLNK------------GV-- 442 (1352)
Q Consensus 382 ~~i~~L~~~L~p~~LRR~k~dv~~-----~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~------------~~-- 442 (1352)
-.+|.-+.++.||||+|..... .||.+...++.++|+..+...|.-+.+.....+.+ +.
T Consensus 539 --~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~~~~~~s 616 (901)
T KOG4439|consen 539 --ANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNNDGGYQS 616 (901)
T ss_pred --hhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhccccCccc
Confidence 3456677899999999998877 79999999999999999999998766543332211 00
Q ss_pred ---------------------------cCchhhHHHHHHHHHHhcCCccccccccCCC-----CCCCC------------
Q 000684 443 ---------------------------RGNQVSLLNIVVELKKCCNHPFLFESADHGY-----GGDTS------------ 478 (1352)
Q Consensus 443 ---------------------------~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~-----~~~~~------------ 478 (1352)
......+|-.+++||+||+||-+..++.+.. .++..
T Consensus 617 ~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sde~~~e~~~l~e 696 (901)
T KOG4439|consen 617 RNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDSDEEQLEEDNLAE 696 (901)
T ss_pred cchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchhhhhhhhhhHHHh
Confidence 0011236888999999999997765433210 00000
Q ss_pred --------C-Cc---------hhhHHHHhhhcchhHHHHHHHHHh-hhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEE
Q 000684 479 --------I-ND---------TSKLERIILSSGKLVILDKLLVRL-HETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRL 539 (1352)
Q Consensus 479 --------~-~~---------~~~l~~li~~SgKl~~L~kLL~~l-~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rl 539 (1352)
. .+ ...+-.....|.|+..+..++..+ .....|++|.||++.+|+++...|...|+.|..+
T Consensus 697 l~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si 776 (901)
T KOG4439|consen 697 LEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSI 776 (901)
T ss_pred hhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeee
Confidence 0 00 011122344688998888888877 6678899999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEec
Q 000684 540 DGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVT 619 (1352)
Q Consensus 540 dGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt 619 (1352)
+|.+...+|+.+++.||....+..|.|||..|||+||||..|+++|++|..|||+...||.+|++|+||+|.|.||||++
T Consensus 777 ~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~ 856 (901)
T KOG4439|consen 777 TGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMC 856 (901)
T ss_pred cCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEEe
Confidence 99999999999999999988888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhHHHHHc
Q 000684 620 SKSVEEDILERAKKKMVLDHLVIQ 643 (1352)
Q Consensus 620 ~~TiEE~Il~ra~~K~~L~~~vi~ 643 (1352)
++|||++|...+..|+.|+..|+.
T Consensus 857 ~gTvEqrV~~LQdkKldlA~~VL~ 880 (901)
T KOG4439|consen 857 KGTVEQRVKSLQDKKLDLAKGVLT 880 (901)
T ss_pred cCcHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999987
No 16
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=3.6e-58 Score=536.24 Aligned_cols=473 Identities=30% Similarity=0.497 Sum_probs=378.2
Q ss_pred CCCcHHHHHHHHHHHHH---------hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHH
Q 000684 175 GKLRDYQLEGLNFLVNS---------WRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEF 245 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~---------~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef 245 (1352)
..|+|||+-||.||..+ -..|.|||||+-||||||+|+|+|+..+++.. ..+.+|+|||-.||.||..||
T Consensus 253 ~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT-~AKtVL~ivPiNTlQNWlsEf 331 (1387)
T KOG1016|consen 253 HVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHT-KAKTVLVIVPINTLQNWLSEF 331 (1387)
T ss_pred hhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcC-ccceEEEEEehHHHHHHHHHh
Confidence 47999999999998643 24677999999999999999999999888754 356799999999999999999
Q ss_pred HHHcCC-----------CeEEEEEcCch---hHHH-HHHHhhhccccCCCCccccEEEecHHHHHhh-------------
Q 000684 246 RKWLPT-----------MNVIVYVGTRA---SREV-CQQYEFYNDKKVGRPIKFNTLLTTYEVVLKD------------- 297 (1352)
Q Consensus 246 ~kw~p~-----------l~vvvy~G~~~---~r~~-i~~~e~~~~~~~~~~~kf~VlItTye~l~~d------------- 297 (1352)
..|.|. +.|.++....+ .|.. +.+ | ...-.|++.-|+++.--
T Consensus 332 nmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~--W--------v~~GGVlLvGYemfRLL~lk~~~~~grpkk 401 (1387)
T KOG1016|consen 332 NMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQ--W--------VQTGGVLLVGYEMFRLLILKTLPKKGRPKK 401 (1387)
T ss_pred hhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHH--H--------hccCCEEEehHHHHHHHHHhcccccCCccc
Confidence 999985 23333332222 2221 211 1 11346889999887421
Q ss_pred -------------------------HhhhhccCcceEecchhcccCCcchHHHHHHHcccccCeEEEeccCCCCCHHHHH
Q 000684 298 -------------------------KAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELW 352 (1352)
Q Consensus 298 -------------------------~~~L~~i~w~~lIVDEAHrlKN~~Skl~~aL~~l~~~~rlLLTGTPlqNnl~EL~ 352 (1352)
...|-.-..++||+||+|||||..+.+..+|..+++++|+.|||-||||||-|+|
T Consensus 402 t~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYw 481 (1387)
T KOG1016|consen 402 TLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYW 481 (1387)
T ss_pred cccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHh
Confidence 1223334679999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCChhHHHHHhccccccc------H-------HHHHHHHHhhcchhhhhhhHhhhccCCCcEEEEEEecC
Q 000684 353 ALLHFLDHDKFKSKDDFIQNYKNLSSFN------E-------NELANLHMELRPHILRRIIKDVEKSLPPKIERILRVEM 419 (1352)
Q Consensus 353 sLL~fL~p~~f~~~~~F~~~f~~~~~~~------~-------~~i~~L~~~L~p~~LRR~k~dv~~~LPpk~e~iv~v~L 419 (1352)
+++.|+.|+.+++..+|...|......+ . .....||.+|.-|+-||.-..+.+.||.+.|++|.|.|
T Consensus 482 CMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~~LP~k~EyViLvr~ 561 (1387)
T KOG1016|consen 482 CMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKKILPEKKEYVILVRK 561 (1387)
T ss_pred hhheeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhhhcccccceEEEEeH
Confidence 9999999999999999999997543211 1 12456999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhc---CCccccccc----------------------cC---
Q 000684 420 SPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCC---NHPFLFESA----------------------DH--- 471 (1352)
Q Consensus 420 s~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~c---nHP~L~~~~----------------------e~--- 471 (1352)
|..|+++|+..+...+..+.. +....+|-++...-|| |||-++... ..
T Consensus 562 s~iQR~LY~~Fm~d~~r~~~~----~~~~~~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~~~~~~ 637 (1387)
T KOG1016|consen 562 SQIQRQLYRNFMLDAKREIAA----NNDAVFNPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGLQQQQS 637 (1387)
T ss_pred HHHHHHHHHHHHHHHHHhhcc----ccccccChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHHhhhcccccCC
Confidence 999999999887654443321 1122345555555555 999764210 00
Q ss_pred ---CCCCCC----------------------CCC-----c-----h-h--------hHHHHhhhcchhHHHHHHHHHhhh
Q 000684 472 ---GYGGDT----------------------SIN-----D-----T-S--------KLERIILSSGKLVILDKLLVRLHE 507 (1352)
Q Consensus 472 ---~~~~~~----------------------~~~-----~-----~-~--------~l~~li~~SgKl~~L~kLL~~l~~ 507 (1352)
..+... ..+ + . + .-..++.++.|++++.+++..-..
T Consensus 638 P~~~~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk~V~~~~~~des~~ 717 (1387)
T KOG1016|consen 638 PFNSIPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPKIVISLEILDESTQ 717 (1387)
T ss_pred CCCCCCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCceEEEEeeeccccc
Confidence 000000 000 0 0 0 011234567899999999988888
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhc------------------CCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeec
Q 000684 508 TKHRVLIFSQMVRMLDILAEYMSYK------------------GFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLST 569 (1352)
Q Consensus 508 ~g~KVLIFSq~~~~ldiL~d~L~~~------------------g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLST 569 (1352)
-|.++|||||....||.|+++|..+ +..|.|+||.++..+|.++|.+||.+.+-.+.|||||
T Consensus 718 ~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllst 797 (1387)
T KOG1016|consen 718 IGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLST 797 (1387)
T ss_pred cCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehh
Confidence 9999999999999999999999754 3468999999999999999999999888788999999
Q ss_pred CCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCCCHHHHHHHHHHHHHhhHHHHHccccccc
Q 000684 570 RAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEG 649 (1352)
Q Consensus 570 rAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~TiEE~Il~ra~~K~~L~~~vi~~~~~~g 649 (1352)
+||.+||||.+|+.+|+||..|||..+.||..|++|+||+|+|+|||||+.+|+|.+||.|+..|.++...|++..+.+.
T Consensus 798 rag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVDd~np~a 877 (1387)
T KOG1016|consen 798 RAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVDDANPDA 877 (1387)
T ss_pred ccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhhcccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887776
Q ss_pred hhhhhhhcchhhHHHHHhc
Q 000684 650 SWRRKKQRKGNELSAILRF 668 (1352)
Q Consensus 650 ~~~~~~~~~~~el~~il~~ 668 (1352)
.+. ..||+.||.+
T Consensus 878 n~s------~Ke~enLl~~ 890 (1387)
T KOG1016|consen 878 NIS------QKELENLLMY 890 (1387)
T ss_pred ccc------HHHHHHHhhh
Confidence 553 3688888865
No 17
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=1.3e-53 Score=483.76 Aligned_cols=412 Identities=25% Similarity=0.373 Sum_probs=330.4
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHHHHHcCCCeE
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRKWLPTMNV 254 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef~kw~p~l~v 254 (1352)
.-|.|||++||+|.+. +|+.+|||||||||||+|||++..+.+. .+|.|||||.|+...|..++.+|+|....
T Consensus 197 s~LlPFQreGv~faL~---RgGR~llADeMGLGKTiQAlaIA~yyra----EwplliVcPAsvrftWa~al~r~lps~~p 269 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALE---RGGRILLADEMGLGKTIQALAIARYYRA----EWPLLIVCPASVRFTWAKALNRFLPSIHP 269 (689)
T ss_pred HhhCchhhhhHHHHHh---cCCeEEEecccccchHHHHHHHHHHHhh----cCcEEEEecHHHhHHHHHHHHHhcccccc
Confidence 3699999999999984 7899999999999999999999988765 47999999999999999999999998655
Q ss_pred E-EEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCCcchHHHHHHHcc--
Q 000684 255 I-VYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEF-- 331 (1352)
Q Consensus 255 v-vy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN~~Skl~~aL~~l-- 331 (1352)
+ +..+..+.- ...+..-.|.|.||+++......|..-+|.+||+||+|.||+..++..+++..+
T Consensus 270 i~vv~~~~D~~-------------~~~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk 336 (689)
T KOG1000|consen 270 IFVVDKSSDPL-------------PDVCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLK 336 (689)
T ss_pred eEEEecccCCc-------------cccccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccchhhhhhhhhHHH
Confidence 2 222322110 112234568899999999999999999999999999999999999998888776
Q ss_pred cccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccc-------cHHHHHHHHHhhcc-hhhhhhhHhh
Q 000684 332 STKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSF-------NENELANLHMELRP-HILRRIIKDV 403 (1352)
Q Consensus 332 ~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~-------~~~~i~~L~~~L~p-~~LRR~k~dv 403 (1352)
...+.+||||||--..+.|||.++..+++..|+...+|-..|++.... .-.+..+|+.+|.. .|+||+|.||
T Consensus 337 ~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dv 416 (689)
T KOG1000|consen 337 VAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADV 416 (689)
T ss_pred HhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999999999999999999999999999875322 23456778777754 5799999999
Q ss_pred hccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCchh
Q 000684 404 EKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDTS 483 (1352)
Q Consensus 404 ~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~~ 483 (1352)
..+|||| .+.|.+....-+-...+.++....+ +. . .+.+. -.+-|. .
T Consensus 417 L~qLPpK-rr~Vv~~~~gr~da~~~~lv~~a~~----~t---~---~~~~e-~~~~~l----~----------------- 463 (689)
T KOG1000|consen 417 LKQLPPK-RREVVYVSGGRIDARMDDLVKAAAD----YT---K---VNSME-RKHESL----L----------------- 463 (689)
T ss_pred HhhCCcc-ceEEEEEcCCccchHHHHHHHHhhh----cc---h---hhhhh-hhhHHH----H-----------------
Confidence 9999999 4445455555554444444433222 00 0 00000 000000 0
Q ss_pred hHHHHhhhcchhHHHHHHHHH----hhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCC
Q 000684 484 KLERIILSSGKLVILDKLLVR----LHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPG 559 (1352)
Q Consensus 484 ~l~~li~~SgKl~~L~kLL~~----l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~ 559 (1352)
+.--...-.|+..+.+.|.. ..+.+.|+|||+....+||-|+.++..+++.++||||+++..+|+.+++.|+. .
T Consensus 464 -l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~-s 541 (689)
T KOG1000|consen 464 -LFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQT-S 541 (689)
T ss_pred -HHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhcc-c
Confidence 00001122355555555554 45678899999999999999999999999999999999999999999999998 3
Q ss_pred CCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCCCHHHHHHHHHHHHHhhHH
Q 000684 560 SEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDH 639 (1352)
Q Consensus 560 s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~TiEE~Il~ra~~K~~L~~ 639 (1352)
+...|-+||..|+|+||+|++|+.|+|....|||...+||.+|+|||||+..|.||+||+++|+|+.++....+|+..-.
T Consensus 542 eev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~ 621 (689)
T KOG1000|consen 542 EEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLG 621 (689)
T ss_pred cceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHHh
Confidence 55667899999999999999999999999999999999999999999999999999999999999999999999987554
Q ss_pred HH
Q 000684 640 LV 641 (1352)
Q Consensus 640 ~v 641 (1352)
.+
T Consensus 622 s~ 623 (689)
T KOG1000|consen 622 SV 623 (689)
T ss_pred hc
Confidence 44
No 18
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=1.3e-51 Score=526.38 Aligned_cols=419 Identities=19% Similarity=0.252 Sum_probs=321.6
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHHHHHcCCCeE
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRKWLPTMNV 254 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef~kw~p~l~v 254 (1352)
..|.|||+..+..++.. ...++|||||||||||++|++++..+... +..+|+|||||.+++.||..|+.+|+ ++.+
T Consensus 151 ~~l~pHQl~~~~~vl~~--~~~R~LLADEvGLGKTIeAglil~~l~~~-g~~~rvLIVvP~sL~~QW~~El~~kF-~l~~ 226 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRR--HAPRVLLADEVGLGKTIEAGMIIHQQLLT-GRAERVLILVPETLQHQWLVEMLRRF-NLRF 226 (956)
T ss_pred CCCCHHHHHHHHHHhhc--cCCCEEEEeCCcCcHHHHHHHHHHHHHHc-CCCCcEEEEcCHHHHHHHHHHHHHHh-CCCe
Confidence 57999999999887654 35689999999999999999999888754 45679999999999999999998887 5667
Q ss_pred EEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhH---hhhhccCcceEecchhcccCCc---chHHHHHH
Q 000684 255 IVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDK---AVLSKIKWNYLMVDEAHRLKNS---EAQLYTTL 328 (1352)
Q Consensus 255 vvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~---~~L~~i~w~~lIVDEAHrlKN~---~Skl~~aL 328 (1352)
.+|.+...... ... .......++++|+||+.+.++. ..+....|++|||||||++++. .|..|+.+
T Consensus 227 ~i~~~~~~~~~-------~~~-~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v 298 (956)
T PRK04914 227 SLFDEERYAEA-------QHD-ADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVV 298 (956)
T ss_pred EEEcCcchhhh-------ccc-ccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHH
Confidence 77765542211 000 1112235789999999998754 4466779999999999999953 56778888
Q ss_pred Hcc--cccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcc---c----------ccccHHHHHHHHH----
Q 000684 329 SEF--STKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKN---L----------SSFNENELANLHM---- 389 (1352)
Q Consensus 329 ~~l--~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~---~----------~~~~~~~i~~L~~---- 389 (1352)
..+ .+.++|||||||+||++.|+|++|+||+|+.|.+...|...... + ..........|..
T Consensus 299 ~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~ 378 (956)
T PRK04914 299 EQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGE 378 (956)
T ss_pred HHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcc
Confidence 887 56799999999999999999999999999999999999764432 1 0001111111111
Q ss_pred -----------------------h---------hcchhhhhhhHhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHh
Q 000684 390 -----------------------E---------LRPHILRRIIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHD 437 (1352)
Q Consensus 390 -----------------------~---------L~p~~LRR~k~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~ 437 (1352)
+ ....|+|+++++|. .+|.+..+.+.++|++. |........
T Consensus 379 ~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~-~fp~R~~~~~~l~~~~~----y~~~~~~~~-- 451 (956)
T PRK04914 379 QDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK-GFPKRELHPIPLPLPEQ----YQTAIKVSL-- 451 (956)
T ss_pred cchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc-CCCcCceeEeecCCCHH----HHHHHHHhH--
Confidence 1 12668889999976 48999999999998764 322221100
Q ss_pred hhccccCchhhHHHHHHHHHHhcCCccc-cccccCCCCCCCCCCchhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEe
Q 000684 438 LNKGVRGNQVSLLNIVVELKKCCNHPFL-FESADHGYGGDTSINDTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFS 516 (1352)
Q Consensus 438 l~~~~~~~~~~llnil~~Lrk~cnHP~L-~~~~e~~~~~~~~~~~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFS 516 (1352)
...++.+ .+|-- +.... ........+.|+..|.++|..+. +.||||||
T Consensus 452 ---------------~~~~~~~-l~pe~~~~~~~-------------~~~~~~~~d~Ki~~L~~~L~~~~--~~KvLVF~ 500 (956)
T PRK04914 452 ---------------EARARDM-LYPEQIYQEFE-------------DNATWWNFDPRVEWLIDFLKSHR--SEKVLVIC 500 (956)
T ss_pred ---------------HHHHHhh-cCHHHHHHHHh-------------hhhhccccCHHHHHHHHHHHhcC--CCeEEEEe
Confidence 0112221 22211 10000 00112234678888888887754 78999999
Q ss_pred cchhHHHHHHHHH-HhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhh
Q 000684 517 QMVRMLDILAEYM-SYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQN 595 (1352)
Q Consensus 517 q~~~~ldiL~d~L-~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~ 595 (1352)
++..+++.|.+.| ...|+.+..++|+++..+|.++++.|+.+..+ ..|||||.+||+||||+.|++||+||.||||..
T Consensus 501 ~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~-~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~ 579 (956)
T PRK04914 501 AKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDG-AQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDL 579 (956)
T ss_pred CcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCC-ccEEEechhhccCCCcccccEEEEecCCCCHHH
Confidence 9999999999999 46799999999999999999999999974322 358999999999999999999999999999999
Q ss_pred HHHHhhhhcccCCCceEEEEEEecCCCHHHHHHHHHHHHHhhHHHHHcc
Q 000684 596 DLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQK 644 (1352)
Q Consensus 596 dlQAigRahRiGQkk~V~VyrLvt~~TiEE~Il~ra~~K~~L~~~vi~~ 644 (1352)
++||+||+||+||++.|.||.+++++|+++.|++....|+.+...++..
T Consensus 580 ~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~ 628 (956)
T PRK04914 580 LEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPT 628 (956)
T ss_pred HHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCC
Confidence 9999999999999999999999999999999999999999877766653
No 19
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.5e-48 Score=482.44 Aligned_cols=446 Identities=28% Similarity=0.469 Sum_probs=359.9
Q ss_pred HHHHHHHHHHHHH-hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcC------CCCcEEEEEChhhHHHHHHHHHHHcC-
Q 000684 179 DYQLEGLNFLVNS-WRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQ------IPGPFLVVVPLSTLSNWAKEFRKWLP- 250 (1352)
Q Consensus 179 ~yQlegvnwL~~~-~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~------~~gp~LIVvP~s~L~nW~~Ef~kw~p- 250 (1352)
.+|..+..|+... +..-.+||+||+||+|||+++|+++........ ..+..|||||.+++.+|..|+.+-..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~ 214 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEE 214 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCc
Confidence 5555555555332 233458999999999999999998865544333 45668999999999999999965553
Q ss_pred -CCeEEEEEc-CchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCCcchHHHHHH
Q 000684 251 -TMNVIVYVG-TRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTL 328 (1352)
Q Consensus 251 -~l~vvvy~G-~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN~~Skl~~aL 328 (1352)
.+.+.+|+| .... ....+++||||||.++.. ..+..+.|-.||+||||.++|.+++.+.++
T Consensus 215 ~~l~v~v~~gr~kd~---------------~el~~~dVVltTy~il~~--~~l~~i~w~Riildea~~ikn~~tq~~~a~ 277 (674)
T KOG1001|consen 215 DKLSIYVYHGRTKDK---------------SELNSYDVVLTTYDILKN--SPLVKIKWLRIVLDEAHTIKNKDTQIFKAV 277 (674)
T ss_pred cceEEEEeccccccc---------------chhcCCceEEeeHHHhhc--ccccceeEEEEEeccccccCCcchHhhhhh
Confidence 478888998 2211 123468899999999875 667779999999999999999999999999
Q ss_pred HcccccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccH--HHHHHHHHhhcchhhhhhhHhh---
Q 000684 329 SEFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNE--NELANLHMELRPHILRRIIKDV--- 403 (1352)
Q Consensus 329 ~~l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~--~~i~~L~~~L~p~~LRR~k~dv--- 403 (1352)
..+.+.+||.|||||+||++.|||+++.|+.-+.+.....|...+........ .....++..|.++++||+|..-
T Consensus 278 ~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~~~~~k~l~~~L~~v~lrrtK~~~~~g 357 (674)
T KOG1001|consen 278 CQLDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKYKEGVKTLQGILKKVMLRRTKEMEVDG 357 (674)
T ss_pred eeeccceeeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHhcccccccccC
Confidence 99999999999999999999999999999999999999988888876555444 6688899999999999988632
Q ss_pred --hccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhcc-----ccCchhhHHHHHHHHHHhcCCccccccccCCCCC-
Q 000684 404 --EKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKG-----VRGNQVSLLNIVVELKKCCNHPFLFESADHGYGG- 475 (1352)
Q Consensus 404 --~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~-----~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~- 475 (1352)
...|||+...++.+.++..++.+|+.+........... ...+...++-.+.+||++|+||+++.........
T Consensus 358 k~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~~ 437 (674)
T KOG1001|consen 358 KPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGDS 437 (674)
T ss_pred ccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHccchHhhhhhhhccccc
Confidence 34699999999999999999999999887665443222 1234566788889999999999987432110000
Q ss_pred ------------------------CC------------------------CCCch----hh--HHHHhh-----------
Q 000684 476 ------------------------DT------------------------SINDT----SK--LERIIL----------- 490 (1352)
Q Consensus 476 ------------------------~~------------------------~~~~~----~~--l~~li~----------- 490 (1352)
+. ..... .. ...++.
T Consensus 438 ~~~~~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s~~~~~~~~~~~ 517 (674)
T KOG1001|consen 438 GSAAALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLSANPLPSIINDL 517 (674)
T ss_pred cccchHHHHHHHHHhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhhcccccchhhhc
Confidence 00 00000 00 001111
Q ss_pred --hcchhHHHHHHHHHhhhcCC-eEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEe
Q 000684 491 --SSGKLVILDKLLVRLHETKH-RVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLL 567 (1352)
Q Consensus 491 --~SgKl~~L~kLL~~l~~~g~-KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLL 567 (1352)
.|.|+..+.++|........ ++|||||++.+++++.-.|...++.+.+++|.++...|..++..|+. +....+.|+
T Consensus 518 ~~~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~-~~~~~vll~ 596 (674)
T KOG1001|consen 518 LPESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPC-DPLVTALLM 596 (674)
T ss_pred cchhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhccccc-CccHHHHHH
Confidence 26677778888875544444 99999999999999999999999999999999999999999999994 556678999
Q ss_pred ecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCCCHHHHHHHHHHHHHhhHHHHH
Q 000684 568 STRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVI 642 (1352)
Q Consensus 568 STrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~TiEE~Il~ra~~K~~L~~~vi 642 (1352)
|.+|||.||||+.|++||++|+.|||....||++||||+||+++|.|+||+.++|+||+|+..+++|..+.....
T Consensus 597 Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~~~~~a~ 671 (674)
T KOG1001|consen 597 SLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKREYNASAF 671 (674)
T ss_pred HHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998876654
No 20
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=1.5e-41 Score=391.01 Aligned_cols=277 Identities=38% Similarity=0.696 Sum_probs=231.8
Q ss_pred HHHHHHHHHHHHh---------cCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCC--cEEEEEChhhHHHHHHHHHHH
Q 000684 180 YQLEGLNFLVNSW---------RNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPG--PFLVVVPLSTLSNWAKEFRKW 248 (1352)
Q Consensus 180 yQlegvnwL~~~~---------~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~g--p~LIVvP~s~L~nW~~Ef~kw 248 (1352)
||++||+||+..+ ....+||||||||+|||+++|+++.++.......+ ++|||||.+++.+|..||.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999999998 78889999999999999999999998887655443 699999999999999999999
Q ss_pred c-C-CCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHH-----hhHhhhhccCcceEecchhcccCCcc
Q 000684 249 L-P-TMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVL-----KDKAVLSKIKWNYLMVDEAHRLKNSE 321 (1352)
Q Consensus 249 ~-p-~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~-----~d~~~L~~i~w~~lIVDEAHrlKN~~ 321 (1352)
+ | ++++++|.|....+.. .......++|+|+||+.+. .....+..++|++|||||||++||..
T Consensus 81 ~~~~~~~v~~~~~~~~~~~~----------~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~ 150 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDSERRRL----------SKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKD 150 (299)
T ss_dssp SGT-TS-EEEESSSCHHHHT----------TSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTT
T ss_pred cccccccccccccccccccc----------cccccccceeeeccccccccccccccccccccccceeEEEeccccccccc
Confidence 9 4 6889998888722221 1123457899999999999 67788888999999999999999999
Q ss_pred hHHHHHHHcccccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhccc-ccccHHHHHHHHHhhcchhhhhhh
Q 000684 322 AQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNL-SSFNENELANLHMELRPHILRRII 400 (1352)
Q Consensus 322 Skl~~aL~~l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~-~~~~~~~i~~L~~~L~p~~LRR~k 400 (1352)
+..++++..+.+.++|+|||||++|++.|||++++||.|+.+.+...|...|... ..........|...+.++++||++
T Consensus 151 s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~~~L~~~l~~~~~r~~~ 230 (299)
T PF00176_consen 151 SKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRPDKENSYENIERLRELLSEFMIRRTK 230 (299)
T ss_dssp SHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHHHHTHHHHHHHHHHHHHCCCEECHCG
T ss_pred ccccccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhhccccccccccccccccchhhhhhhc
Confidence 9999999999999999999999999999999999999999999999999887543 122355688999999999999999
Q ss_pred HhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccc---cCchhhHHHHHHHHHHhcCCcccc
Q 000684 401 KDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGV---RGNQVSLLNIVVELKKCCNHPFLF 466 (1352)
Q Consensus 401 ~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~---~~~~~~llnil~~Lrk~cnHP~L~ 466 (1352)
.++...||+..+.++.|+||+.|+.+|+.+.......+.... ......++..+++||++|+||+|+
T Consensus 231 ~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 231 KDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQSSRKKSKKLSSLLQILKRLRQVCNHPYLV 299 (299)
T ss_dssp GGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T--TCHHHHHHHHHHHHHHHHHH-THHC
T ss_pred ccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHhCCcccC
Confidence 999889999999999999999999999999988877665543 234567899999999999999984
No 21
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=8.9e-37 Score=378.81 Aligned_cols=340 Identities=18% Similarity=0.279 Sum_probs=255.8
Q ss_pred CCCCcHHHHHHHHHHHHHhcCC--CcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhh-HHHHHHHHHHHc-
Q 000684 174 GGKLRDYQLEGLNFLVNSWRND--TNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLST-LSNWAKEFRKWL- 249 (1352)
Q Consensus 174 ~~~Lr~yQlegvnwL~~~~~~~--~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~-L~nW~~Ef~kw~- 249 (1352)
..+|||||.++++++.. ++ .+|||++.||+|||+++++++..+ .+++|||||.++ +.||.++|.+|+
T Consensus 253 ~~~LRpYQ~eAl~~~~~---~gr~r~GIIvLPtGaGKTlvai~aa~~l------~k~tLILvps~~Lv~QW~~ef~~~~~ 323 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFG---NGRARSGIIVLPCGAGKSLVGVTAACTV------KKSCLVLCTSAVSVEQWKQQFKMWST 323 (732)
T ss_pred CCCcCHHHHHHHHHHHh---cCCCCCcEEEeCCCCChHHHHHHHHHHh------CCCEEEEeCcHHHHHHHHHHHHHhcC
Confidence 47899999999998863 33 489999999999999999887654 368999999876 699999999996
Q ss_pred -CCCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhh----------HhhhhccCcceEecchhcccC
Q 000684 250 -PTMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKD----------KAVLSKIKWNYLMVDEAHRLK 318 (1352)
Q Consensus 250 -p~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d----------~~~L~~i~w~~lIVDEAHrlK 318 (1352)
+...+..|.|....+ ......|+||||+++... ...|....|++||+||||++.
T Consensus 324 l~~~~I~~~tg~~k~~---------------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp 388 (732)
T TIGR00603 324 IDDSQICRFTSDAKER---------------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP 388 (732)
T ss_pred CCCceEEEEecCcccc---------------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc
Confidence 346677777764321 112468999999998643 234555689999999999995
Q ss_pred CcchHHHHHHHcccccCeEEEeccCCCCCHHHHHHHHhhc-CCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhh
Q 000684 319 NSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFL-DHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILR 397 (1352)
Q Consensus 319 N~~Skl~~aL~~l~~~~rlLLTGTPlqNnl~EL~sLL~fL-~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LR 397 (1352)
+ ....+++..+.+.+||+|||||++++ +.+..+.|+ .|..|..
T Consensus 389 A--~~fr~il~~l~a~~RLGLTATP~ReD--~~~~~L~~LiGP~vye~-------------------------------- 432 (732)
T TIGR00603 389 A--AMFRRVLTIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYEA-------------------------------- 432 (732)
T ss_pred H--HHHHHHHHhcCcCcEEEEeecCcccC--CchhhhhhhcCCeeeec--------------------------------
Confidence 4 34555777889999999999999876 234444443 3433211
Q ss_pred hhhHhh--hccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCC
Q 000684 398 RIIKDV--EKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGG 475 (1352)
Q Consensus 398 R~k~dv--~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~ 475 (1352)
...++ ...|.+.....|+|+|++.....|- .... . .+.
T Consensus 433 -~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl---~~~~----------~---------~k~----------------- 472 (732)
T TIGR00603 433 -NWMELQKKGFIANVQCAEVWCPMTPEFYREYL---RENS----------R---------KRM----------------- 472 (732)
T ss_pred -CHHHHHhCCccccceEEEEEecCCHHHHHHHH---Hhcc----------h---------hhh-----------------
Confidence 01111 1236666777899999986543332 1100 0 000
Q ss_pred CCCCCchhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHh
Q 000684 476 DTSINDTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHF 555 (1352)
Q Consensus 476 ~~~~~~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~F 555 (1352)
.....+..|+..+..|+......|+++||||+++..++.+...| +. ..|+|+++..+|.+++++|
T Consensus 473 ----------~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~~--~~I~G~ts~~ER~~il~~F 537 (732)
T TIGR00603 473 ----------LLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---GK--PFIYGPTSQQERMQILQNF 537 (732)
T ss_pred ----------HHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---CC--ceEECCCCHHHHHHHHHHH
Confidence 00112456888998998877678999999999998888887776 33 4589999999999999999
Q ss_pred cCCCCCCcEEEeecCCCccCCCCCccCEEEEcCCCC-ChhhHHHHhhhhcccCCCce-----EEEEEEecCCCHHHHHHH
Q 000684 556 NAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDW-NPQNDLQAMSRAHRIGQQEV-----VNIYRFVTSKSVEEDILE 629 (1352)
Q Consensus 556 n~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdW-NP~~dlQAigRahRiGQkk~-----V~VyrLvt~~TiEE~Il~ 629 (1352)
+.. +.+.+|++|++|++||||+.|++||++++++ |+..++||+||+.|.+..+. ..+|.||+++|.|+..-.
T Consensus 538 r~~--~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~ 615 (732)
T TIGR00603 538 QHN--PKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYST 615 (732)
T ss_pred HhC--CCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHH
Confidence 863 2445788889999999999999999999986 99999999999999987654 789999999999988854
Q ss_pred H
Q 000684 630 R 630 (1352)
Q Consensus 630 r 630 (1352)
+
T Consensus 616 ~ 616 (732)
T TIGR00603 616 K 616 (732)
T ss_pred H
Confidence 4
No 22
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=2.3e-33 Score=364.25 Aligned_cols=438 Identities=18% Similarity=0.219 Sum_probs=283.0
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEECh-hhHHHHHHHHHHHcCC--
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPL-STLSNWAKEFRKWLPT-- 251 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~-s~L~nW~~Ef~kw~p~-- 251 (1352)
.++|+||.+.+..++. .++|++++||+|||++++.++..+.. ...+++|||||+ .++.||..+|.+++..
T Consensus 14 ~~~r~yQ~~~~~~~l~-----~n~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 86 (773)
T PRK13766 14 IEARLYQQLLAATALK-----KNTLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNIPE 86 (773)
T ss_pred CCccHHHHHHHHHHhc-----CCeEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCC
Confidence 5899999999988763 38999999999999998887776653 345789999998 5668999999988632
Q ss_pred CeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhH--hhhhccCcceEecchhcccCCcchHHHHHHH
Q 000684 252 MNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDK--AVLSKIKWNYLMVDEAHRLKNSEAQLYTTLS 329 (1352)
Q Consensus 252 l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~--~~L~~i~w~~lIVDEAHrlKN~~Skl~~aL~ 329 (1352)
..++++.|........ +.+ ...+|+++|++++..+. ..+....|++|||||||++.+..+..+.+-.
T Consensus 87 ~~v~~~~g~~~~~~r~---~~~--------~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~ 155 (773)
T PRK13766 87 EKIVVFTGEVSPEKRA---ELW--------EKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAER 155 (773)
T ss_pred ceEEEEeCCCCHHHHH---HHH--------hCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHH
Confidence 4788888876544321 122 14689999999987753 2333447999999999999876554333222
Q ss_pred c---ccccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChh----HHHHHhccc-----ccccHHHHHHHHHhhcchhhh
Q 000684 330 E---FSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKD----DFIQNYKNL-----SSFNENELANLHMELRPHILR 397 (1352)
Q Consensus 330 ~---l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~----~F~~~f~~~-----~~~~~~~i~~L~~~L~p~~LR 397 (1352)
- ....++++|||||.++ ...+..+++-|.......+. ++...+... ...-......++..|..++.+
T Consensus 156 ~~~~~~~~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~ 234 (773)
T PRK13766 156 YHEDAKNPLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKD 234 (773)
T ss_pred HHhcCCCCEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHH
Confidence 1 2344589999999876 55666666655433221111 111111100 011234566788888888887
Q ss_pred hhhHhhhcc-CCCcEEEEEEecCCHHHHHHHHHHHHHhHHh---h-------------hccccCchhhHHHHHHHHHHhc
Q 000684 398 RIIKDVEKS-LPPKIERILRVEMSPLQKQYYKWILERNFHD---L-------------NKGVRGNQVSLLNIVVELKKCC 460 (1352)
Q Consensus 398 R~k~dv~~~-LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~---l-------------~~~~~~~~~~llnil~~Lrk~c 460 (1352)
+++...... +++....+....+...++.+++.+....... + ..........+...+..++..+
T Consensus 235 ~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~ 314 (773)
T PRK13766 235 RLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEA 314 (773)
T ss_pred HHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhc
Confidence 776654322 2222211222223333333333222110000 0 0000000111122222222111
Q ss_pred CCccccccccCCCCCCCCC-CchhhHHHHhhhcchhHHHHHHHHHhh--hcCCeEEEEecchhHHHHHHHHHHhcCCcEE
Q 000684 461 NHPFLFESADHGYGGDTSI-NDTSKLERIILSSGKLVILDKLLVRLH--ETKHRVLIFSQMVRMLDILAEYMSYKGFQFQ 537 (1352)
Q Consensus 461 nHP~L~~~~e~~~~~~~~~-~~~~~l~~li~~SgKl~~L~kLL~~l~--~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~ 537 (1352)
.++-....+.. ...+... .....+..+...++|+..|.++|.... ..+.+|||||++.++++.|.++|...|+.+.
T Consensus 315 ~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~ 393 (773)
T PRK13766 315 RSSGGSKASKR-LVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAV 393 (773)
T ss_pred cccCCcHHHHH-HHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceE
Confidence 11000000000 0000000 000011122345789999999998876 5788999999999999999999999999999
Q ss_pred EEeCC--------CCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCC
Q 000684 538 RLDGS--------TKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQ 609 (1352)
Q Consensus 538 rldGs--------~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQk 609 (1352)
+++|. ++..+|..++++|+.+ .+.+|++|.++++|+|++.+++||+||++|||..++|+.||++|.|+
T Consensus 394 ~~~g~~~~~~~~~~~~~~r~~~~~~F~~g---~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~- 469 (773)
T PRK13766 394 RFVGQASKDGDKGMSQKEQIEILDKFRAG---EFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE- 469 (773)
T ss_pred EEEccccccccCCCCHHHHHHHHHHHHcC---CCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-
Confidence 99997 8889999999999984 34589999999999999999999999999999999998888888775
Q ss_pred ceEEEEEEecCCCHHHHHHHHHHHHHhhH
Q 000684 610 EVVNIYRFVTSKSVEEDILERAKKKMVLD 638 (1352)
Q Consensus 610 k~V~VyrLvt~~TiEE~Il~ra~~K~~L~ 638 (1352)
+.||.|++++|+||.++..+.+|....
T Consensus 470 --~~v~~l~~~~t~ee~~y~~~~~ke~~~ 496 (773)
T PRK13766 470 --GRVVVLIAKGTRDEAYYWSSRRKEKKM 496 (773)
T ss_pred --CEEEEEEeCCChHHHHHHHhhHHHHHH
Confidence 678999999999999998877665544
No 23
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=99.97 E-value=3.3e-31 Score=329.20 Aligned_cols=262 Identities=24% Similarity=0.413 Sum_probs=197.7
Q ss_pred hcCCCcEEEEcCCCCcHHHHHHHHHHHH------------HHh---cCCCCcEEEEEChhhHHHHHHHHHHHcCCC-eEE
Q 000684 192 WRNDTNVILADEMGLGKTVQSVSMLGFL------------QNA---QQIPGPFLVVVPLSTLSNWAKEFRKWLPTM-NVI 255 (1352)
Q Consensus 192 ~~~~~~~ILADEmGLGKTlqaIa~l~~L------------~~~---~~~~gp~LIVvP~s~L~nW~~Ef~kw~p~l-~vv 255 (1352)
++.|..+++|||||+|||...++....- ... ....|.+|||||.+++.||-.|+.++++++ .|.
T Consensus 371 ~~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~ 450 (1394)
T KOG0298|consen 371 KKHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVL 450 (1394)
T ss_pred ccCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEE
Confidence 3456678999999999999877654221 111 112578999999999999999999999887 999
Q ss_pred EEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhh----------------------HhhhhccCcceEecch
Q 000684 256 VYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKD----------------------KAVLSKIKWNYLMVDE 313 (1352)
Q Consensus 256 vy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d----------------------~~~L~~i~w~~lIVDE 313 (1352)
.|.|-...-.... ..-..+|||+|||.++..+ ...|-.+.|..|+|||
T Consensus 451 ~Y~Girk~~~~~~----------~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDE 520 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSP----------FELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDE 520 (1394)
T ss_pred EEechhhhcccCc----------hhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhH
Confidence 9999754322110 1234799999999999765 2345567899999999
Q ss_pred hcccCCcchHHHHHHHcccccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcc
Q 000684 314 AHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRP 393 (1352)
Q Consensus 314 AHrlKN~~Skl~~aL~~l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p 393 (1352)
|+.+-...|...+.+..+.+.++|.+||||+|+ +.+|+.||.||.-..|....+|.+.....-.. ......++..+..
T Consensus 521 aQMvesssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~-ra~~~~~~dl~~q 598 (1394)
T KOG0298|consen 521 AQMVESSSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQL-RAKCEPLLDLFKQ 598 (1394)
T ss_pred HHhhcchHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHH-HhhhhhHHHHHHh
Confidence 999999999999999999999999999999999 99999999999999999988887654321110 1223356777888
Q ss_pred hhhhhhhHhhhc--cCCCcEEEEEEecCCHHHHHHHHHHHHH----hHHhh---h-------cccc----CchhhHHHHH
Q 000684 394 HILRRIIKDVEK--SLPPKIERILRVEMSPLQKQYYKWILER----NFHDL---N-------KGVR----GNQVSLLNIV 453 (1352)
Q Consensus 394 ~~LRR~k~dv~~--~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~----~~~~l---~-------~~~~----~~~~~llnil 453 (1352)
.+-|+.+.+|+. .+||-.+.+.+..+++.+..+|+..... ....+ . .+.. .....+++.+
T Consensus 599 ~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~~a~i~~~l 678 (1394)
T KOG0298|consen 599 LLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQLLAIILKWL 678 (1394)
T ss_pred hhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhhHHHHHHHH
Confidence 888999988876 5799988888899999988888754332 21111 1 1000 1124578899
Q ss_pred HHHHHhcCCccc
Q 000684 454 VELKKCCNHPFL 465 (1352)
Q Consensus 454 ~~Lrk~cnHP~L 465 (1352)
.+||++|+||..
T Consensus 679 ~rLRq~Cchplv 690 (1394)
T KOG0298|consen 679 LRLRQACCHPLV 690 (1394)
T ss_pred HHHHHhhccccc
Confidence 999999999965
No 24
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.97 E-value=5.3e-28 Score=280.19 Aligned_cols=411 Identities=20% Similarity=0.230 Sum_probs=271.0
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChh-hHHHHHHHHHHHc--CC
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLS-TLSNWAKEFRKWL--PT 251 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s-~L~nW~~Ef~kw~--p~ 251 (1352)
.+.|.||+.-+.-.+. .|++++..||||||++|+.++.+.+... .|.+|+++|+. ++.|-.+-|.+.+ |.
T Consensus 14 ie~R~YQ~~i~a~al~-----~NtLvvlPTGLGKT~IA~~V~~~~l~~~--~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~ 86 (542)
T COG1111 14 IEPRLYQLNIAAKALF-----KNTLVVLPTGLGKTFIAAMVIANRLRWF--GGKVLFLAPTKPLVLQHAEFCRKVTGIPE 86 (542)
T ss_pred ccHHHHHHHHHHHHhh-----cCeEEEecCCccHHHHHHHHHHHHHHhc--CCeEEEecCCchHHHHHHHHHHHHhCCCh
Confidence 5789999998877763 4999999999999999988887555543 34799999985 5577777788776 55
Q ss_pred CeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhH--hhhhccCcceEecchhcccCCcchHHH--HH
Q 000684 252 MNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDK--AVLSKIKWNYLMVDEAHRLKNSEAQLY--TT 327 (1352)
Q Consensus 252 l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~--~~L~~i~w~~lIVDEAHrlKN~~Skl~--~a 327 (1352)
..++.+.|.....+....+ .+-.|+++|++++.+|. ..+..-.+.+||+|||||.-+..+-.+ +.
T Consensus 87 ~~i~~ltGev~p~~R~~~w-----------~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~ 155 (542)
T COG1111 87 DEIAALTGEVRPEEREELW-----------AKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKE 155 (542)
T ss_pred hheeeecCCCChHHHHHHH-----------hhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHH
Confidence 7888999976544322211 25689999999999874 345555789999999999976654333 22
Q ss_pred HHccccc-CeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhh--hHhhh
Q 000684 328 LSEFSTK-NKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRI--IKDVE 404 (1352)
Q Consensus 328 L~~l~~~-~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~--k~dv~ 404 (1352)
.....++ +.|+|||||-. ....+-..++=|.-+.. .-|+ -.||.
T Consensus 156 y~~~~k~~~ilgLTASPGs-~~ekI~eV~~nLgIe~v--------------------------------evrTE~d~DV~ 202 (542)
T COG1111 156 YLRSAKNPLILGLTASPGS-DLEKIQEVVENLGIEKV--------------------------------EVRTEEDPDVR 202 (542)
T ss_pred HHHhccCceEEEEecCCCC-CHHHHHHHHHhCCcceE--------------------------------EEecCCCccHH
Confidence 2333333 56899999942 22333222222221110 0011 12344
Q ss_pred ccCCCcEEEEEEecCCHHHHHH---HHHHHHHhHHhhhccc-----c-CchhhHH---------------------HHHH
Q 000684 405 KSLPPKIERILRVEMSPLQKQY---YKWILERNFHDLNKGV-----R-GNQVSLL---------------------NIVV 454 (1352)
Q Consensus 405 ~~LPpk~e~iv~v~Ls~~Qk~~---Yk~il~~~~~~l~~~~-----~-~~~~~ll---------------------nil~ 454 (1352)
.++-.+...++.|+|++.-.+. .+.++...+..+.... . -+...++ .++.
T Consensus 203 ~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a 282 (542)
T COG1111 203 PYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLA 282 (542)
T ss_pred HhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHH
Confidence 4455556666666666654332 2233332222221110 0 0011111 1111
Q ss_pred HHHHhcCCc--------------cccccccCCCCCCC----C----CCchhhHHHHh------hhcchhHHHHHHHHHhh
Q 000684 455 ELKKCCNHP--------------FLFESADHGYGGDT----S----INDTSKLERII------LSSGKLVILDKLLVRLH 506 (1352)
Q Consensus 455 ~Lrk~cnHP--------------~L~~~~e~~~~~~~----~----~~~~~~l~~li------~~SgKl~~L~kLL~~l~ 506 (1352)
.+-+ |.|+ ||-...+....+.. . ......+..++ -..+||..|.++|....
T Consensus 283 ~~~k-l~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~ 361 (542)
T COG1111 283 EAIK-LAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQL 361 (542)
T ss_pred HHHH-HHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHH
Confidence 1111 1111 11111111111000 0 00011111121 23679999999999876
Q ss_pred --hcCCeEEEEecchhHHHHHHHHHHhcCCcEE-EEeC--------CCCHHHHHHHHHHhcCCCCCCcEEEeecCCCccC
Q 000684 507 --ETKHRVLIFSQMVRMLDILAEYMSYKGFQFQ-RLDG--------STKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLG 575 (1352)
Q Consensus 507 --~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~-rldG--------s~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~G 575 (1352)
..+.|||||+++..+++.|.++|...|.... ++-| +|++.+...+|++|.+ +.+.+|++|..|.+|
T Consensus 362 ~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~---Ge~nVLVaTSVgEEG 438 (542)
T COG1111 362 EKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRK---GEYNVLVATSVGEEG 438 (542)
T ss_pred hcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhc---CCceEEEEccccccc
Confidence 6778999999999999999999999988875 6655 5899999999999998 455699999999999
Q ss_pred CCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCCCHHHHHHHHHHHHHhhHHHHHc
Q 000684 576 INLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQ 643 (1352)
Q Consensus 576 INL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~TiEE~Il~ra~~K~~L~~~vi~ 643 (1352)
||++++|.|||||+.-+|...+||+||++|- +.-.||-|+++||-||.-+..+.+|..-....+.
T Consensus 439 LDIp~vDlVifYEpvpSeIR~IQR~GRTGR~---r~Grv~vLvt~gtrdeayy~~s~rke~~m~e~i~ 503 (542)
T COG1111 439 LDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK---RKGRVVVLVTEGTRDEAYYYSSRRKEQKMIESIR 503 (542)
T ss_pred CCCCcccEEEEecCCcHHHHHHHhhCccccC---CCCeEEEEEecCchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999985 5567799999999999999999998665444443
No 25
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.96 E-value=5.8e-27 Score=284.17 Aligned_cols=362 Identities=22% Similarity=0.297 Sum_probs=270.8
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhh-HHHHHHHHHHHcCCC
Q 000684 174 GGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLST-LSNWAKEFRKWLPTM 252 (1352)
Q Consensus 174 ~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~-L~nW~~Ef~kw~p~l 252 (1352)
..+|||||.++++-+...+..+..+|+...+|.|||+.++.++..+.. ++|||||... +.||...+..++...
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~------~~Lvlv~~~~L~~Qw~~~~~~~~~~~ 107 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR------STLVLVPTKELLDQWAEALKKFLLLN 107 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC------CEEEEECcHHHHHHHHHHHHHhcCCc
Confidence 468999999999988887777889999999999999999988876643 3999999865 599998888886543
Q ss_pred -eEEEEEcCchhHHHHHHHhhhccccCCCCcc-ccEEEecHHHHHhhH--hhhhccCcceEecchhcccCCcchHHHHHH
Q 000684 253 -NVIVYVGTRASREVCQQYEFYNDKKVGRPIK-FNTLLTTYEVVLKDK--AVLSKIKWNYLMVDEAHRLKNSEAQLYTTL 328 (1352)
Q Consensus 253 -~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~k-f~VlItTye~l~~d~--~~L~~i~w~~lIVDEAHrlKN~~Skl~~aL 328 (1352)
.+..|.|+..+ .. ..|.++||+++.+.. ..+..-.|++||+||||++..... ...+
T Consensus 108 ~~~g~~~~~~~~------------------~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~--~~~~ 167 (442)
T COG1061 108 DEIGIYGGGEKE------------------LEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSY--RRIL 167 (442)
T ss_pred cccceecCceec------------------cCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHH--HHHH
Confidence 44455554321 12 579999999998863 333334799999999999965443 3344
Q ss_pred HcccccC-eEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhHhh-h-c
Q 000684 329 SEFSTKN-KLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIKDV-E-K 405 (1352)
Q Consensus 329 ~~l~~~~-rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~dv-~-~ 405 (1352)
..+...+ +|+|||||.......+..+. ..+.|.+......+. . .
T Consensus 168 ~~~~~~~~~LGLTATp~R~D~~~~~~l~---------------------------------~~~g~~vy~~~~~~li~~g 214 (442)
T COG1061 168 ELLSAAYPRLGLTATPEREDGGRIGDLF---------------------------------DLIGPIVYEVSLKELIDEG 214 (442)
T ss_pred HhhhcccceeeeccCceeecCCchhHHH---------------------------------HhcCCeEeecCHHHHHhCC
Confidence 5555666 99999999644322222222 222233333222222 2 4
Q ss_pred cCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCchhhH
Q 000684 406 SLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDTSKL 485 (1352)
Q Consensus 406 ~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~~~l 485 (1352)
.|.|.....+.+.++......|..........+..... +. ......
T Consensus 215 ~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~-------~~---------------------------~~~~~~ 260 (442)
T COG1061 215 YLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT-------LR---------------------------AENEAR 260 (442)
T ss_pred CccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh-------hh---------------------------HHHHHH
Confidence 58889999999999998888887655554333221110 00 001111
Q ss_pred HHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEE
Q 000684 486 ERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCF 565 (1352)
Q Consensus 486 ~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vf 565 (1352)
........|+..+..++.... .+.+++||+..+...+.|...|...|+ +..++|.++..+|.++++.|...+ +.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~---~~~ 335 (442)
T COG1061 261 RIAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGG---IKV 335 (442)
T ss_pred HHhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCC---CCE
Confidence 223345678888888888776 889999999999999999999998888 999999999999999999999854 669
Q ss_pred EeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcc-cCCCce--EEEEEEecCCCHHHHHHHHHHH
Q 000684 566 LLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHR-IGQQEV--VNIYRFVTSKSVEEDILERAKK 633 (1352)
Q Consensus 566 LLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahR-iGQkk~--V~VyrLvt~~TiEE~Il~ra~~ 633 (1352)
|++++++.+|+|++.|+++|+..+.-++..++|++||+.| ...++. +..|-+++..+.+..+......
T Consensus 336 lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (442)
T COG1061 336 LVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRRL 406 (442)
T ss_pred EEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhhh
Confidence 9999999999999999999999999999999999999999 444443 7888889999988888776655
No 26
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.96 E-value=1.5e-26 Score=285.64 Aligned_cols=337 Identities=14% Similarity=0.180 Sum_probs=229.7
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEECh-hhHHHHHHHHHHHc--C
Q 000684 174 GGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPL-STLSNWAKEFRKWL--P 250 (1352)
Q Consensus 174 ~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~-s~L~nW~~Ef~kw~--p 250 (1352)
...|||||.+++.-++ .+.++||...||+|||+.++.++.++... ..+++|||||. .++.||.++|.+|. |
T Consensus 112 ~~~~r~~Q~~av~~~l----~~~~~il~apTGsGKT~i~~~l~~~~~~~--~~~~vLilvpt~eL~~Q~~~~l~~~~~~~ 185 (501)
T PHA02558 112 KIEPHWYQYDAVYEGL----KNNRRLLNLPTSAGKSLIQYLLSRYYLEN--YEGKVLIIVPTTSLVTQMIDDFVDYRLFP 185 (501)
T ss_pred cCCCCHHHHHHHHHHH----hcCceEEEeCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECcHHHHHHHHHHHHHhcccc
Confidence 3689999999998766 45778999999999999887666554443 23489999998 55699999999986 3
Q ss_pred CCeEE-EEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCCcchHHHHHHH
Q 000684 251 TMNVI-VYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLS 329 (1352)
Q Consensus 251 ~l~vv-vy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN~~Skl~~aL~ 329 (1352)
...+. ++.|... ....+|+|+||+.+.+....+ --.+++|||||||++... .+...+.
T Consensus 186 ~~~~~~i~~g~~~------------------~~~~~I~VaT~qsl~~~~~~~-~~~~~~iIvDEaH~~~~~--~~~~il~ 244 (501)
T PHA02558 186 REAMHKIYSGTAK------------------DTDAPIVVSTWQSAVKQPKEW-FDQFGMVIVDECHLFTGK--SLTSIIT 244 (501)
T ss_pred ccceeEEecCccc------------------CCCCCEEEeeHHHHhhchhhh-ccccCEEEEEchhcccch--hHHHHHH
Confidence 33333 3333321 124689999999987654321 126899999999999653 3556666
Q ss_pred cc-cccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhHhhhccCC
Q 000684 330 EF-STKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIKDVEKSLP 408 (1352)
Q Consensus 330 ~l-~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~dv~~~LP 408 (1352)
.+ .+.++++|||||-.... ..+.+..++.|-.... . ..++. + ...+.
T Consensus 245 ~~~~~~~~lGLTATp~~~~~-~~~~~~~~fG~i~~~v--------------~---~~~li------------~--~g~l~ 292 (501)
T PHA02558 245 KLDNCKFKFGLTGSLRDGKA-NILQYVGLFGDIFKPV--------------T---TSQLM------------E--EGQVT 292 (501)
T ss_pred hhhccceEEEEeccCCCccc-cHHHHHHhhCCceEEe--------------c---HHHHH------------h--CCCcC
Confidence 67 56789999999953321 1111222222211000 0 00000 0 01122
Q ss_pred CcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCchhhHHHH
Q 000684 409 PKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDTSKLERI 488 (1352)
Q Consensus 409 pk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~~~l~~l 488 (1352)
+.....+.+..++.....+. ... + ...+..+
T Consensus 293 ~~~~~~v~~~~~~~~~~~~~--------------~~~---~--------------------------------~~~~~~l 323 (501)
T PHA02558 293 DLKINSIFLRYPDEDRVKLK--------------GED---Y--------------------------------QEEIKYI 323 (501)
T ss_pred CceEEEEeccCCHHHhhhhc--------------ccc---h--------------------------------HHHHHHH
Confidence 22223334433322110000 000 0 0011223
Q ss_pred hhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEee
Q 000684 489 ILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLS 568 (1352)
Q Consensus 489 i~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLS 568 (1352)
+....+..++.+++..+.+.|.++|||+..+..++.|.+.|...|+++..++|+++.++|..+++.|+.+ . ..+||+
T Consensus 324 ~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~--~-~~vLva 400 (501)
T PHA02558 324 TSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGG--K-GIIIVA 400 (501)
T ss_pred hccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCC--C-CeEEEE
Confidence 3344566677777777777889999999999999999999999999999999999999999999999863 2 235555
Q ss_pred c-CCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCc-eEEEEEEecCC
Q 000684 569 T-RAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQE-VVNIYRFVTSK 621 (1352)
Q Consensus 569 T-rAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk-~V~VyrLvt~~ 621 (1352)
| +..|+|+|++.+|+||+++|.-+...++|++||++|.|..| .|.||.|+-.-
T Consensus 401 T~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~ 455 (501)
T PHA02558 401 SYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDL 455 (501)
T ss_pred EcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeeccc
Confidence 5 99999999999999999999999999999999999998764 68999999744
No 27
>PTZ00110 helicase; Provisional
Probab=99.93 E-value=8.7e-24 Score=263.01 Aligned_cols=321 Identities=21% Similarity=0.281 Sum_probs=220.3
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHH-HHHHHHHHHhc---CCCCc-EEEEEChhhH-HHHHHHHHHH
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQS-VSMLGFLQNAQ---QIPGP-FLVVVPLSTL-SNWAKEFRKW 248 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqa-Ia~l~~L~~~~---~~~gp-~LIVvP~s~L-~nW~~Ef~kw 248 (1352)
.++.|+|.+++..++ .|.++|+..+||+|||++. |..+..+.... ...+| +|||||+..| .|+..++.++
T Consensus 151 ~~pt~iQ~~aip~~l----~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~ 226 (545)
T PTZ00110 151 TEPTPIQVQGWPIAL----SGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKF 226 (545)
T ss_pred CCCCHHHHHHHHHHh----cCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHH
Confidence 379999999998776 7899999999999999985 34444444321 11233 7999998655 8899999998
Q ss_pred cCC--CeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHh--hhhccCcceEecchhcccCCcc--h
Q 000684 249 LPT--MNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKA--VLSKIKWNYLMVDEAHRLKNSE--A 322 (1352)
Q Consensus 249 ~p~--l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~--~L~~i~w~~lIVDEAHrlKN~~--S 322 (1352)
... +.+.+.+|............ ..++|+|+|++.+..... .+.--...+|||||||++.... .
T Consensus 227 ~~~~~i~~~~~~gg~~~~~q~~~l~----------~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~ 296 (545)
T PTZ00110 227 GASSKIRNTVAYGGVPKRGQIYALR----------RGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEP 296 (545)
T ss_pred hcccCccEEEEeCCCCHHHHHHHHH----------cCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHH
Confidence 753 55666666554444333221 247999999998865322 1222357899999999997543 2
Q ss_pred HHHHHHHccccc-CeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhH
Q 000684 323 QLYTTLSEFSTK-NKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIK 401 (1352)
Q Consensus 323 kl~~aL~~l~~~-~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~ 401 (1352)
.+...+..+... ..+++|||.- .++-.+...+.
T Consensus 297 ~i~~il~~~~~~~q~l~~SAT~p----~~v~~l~~~l~------------------------------------------ 330 (545)
T PTZ00110 297 QIRKIVSQIRPDRQTLMWSATWP----KEVQSLARDLC------------------------------------------ 330 (545)
T ss_pred HHHHHHHhCCCCCeEEEEEeCCC----HHHHHHHHHHh------------------------------------------
Confidence 345555555443 3578899951 11111110000
Q ss_pred hhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCc
Q 000684 402 DVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSIND 481 (1352)
Q Consensus 402 dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~ 481 (1352)
...| ..+.+..... . .. . .+++ -+.
T Consensus 331 ---~~~~----v~i~vg~~~l----------------~-~~-~----------~i~q----~~~---------------- 355 (545)
T PTZ00110 331 ---KEEP----VHVNVGSLDL----------------T-AC-H----------NIKQ----EVF---------------- 355 (545)
T ss_pred ---ccCC----EEEEECCCcc----------------c-cC-C----------CeeE----EEE----------------
Confidence 0000 0000000000 0 00 0 0000 000
Q ss_pred hhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCC
Q 000684 482 TSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSE 561 (1352)
Q Consensus 482 ~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~ 561 (1352)
.+....|...|..+|..+...+.++||||+....++.|...|...|+....++|++++.+|..+++.|.++.
T Consensus 356 ------~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~-- 427 (545)
T PTZ00110 356 ------VVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGK-- 427 (545)
T ss_pred ------EEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCC--
Confidence 001123556667777777667889999999999999999999999999999999999999999999999843
Q ss_pred CcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCC
Q 000684 562 DFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSK 621 (1352)
Q Consensus 562 ~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~ 621 (1352)
..+||+|.++++|||+..+++||+||.++++..++|++||++|.|.+..+ |.|++.+
T Consensus 428 -~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~a--i~~~~~~ 484 (545)
T PTZ00110 428 -SPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGAS--YTFLTPD 484 (545)
T ss_pred -CcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceE--EEEECcc
Confidence 34899999999999999999999999999999999999999999987655 6677765
No 28
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=3.5e-24 Score=255.22 Aligned_cols=319 Identities=22% Similarity=0.298 Sum_probs=232.0
Q ss_pred CCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHH-HHHHHHHHHHh----cCCCCc-EEEEEChhhH-HHHHHHHHHH
Q 000684 176 KLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQ-SVSMLGFLQNA----QQIPGP-FLVVVPLSTL-SNWAKEFRKW 248 (1352)
Q Consensus 176 ~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlq-aIa~l~~L~~~----~~~~gp-~LIVvP~s~L-~nW~~Ef~kw 248 (1352)
.+.|.|..+.-.++ .|.++|..+++|+|||+. .|..|.++... ....+| +||++|+.-| .|.+.++..+
T Consensus 113 ~PtpIQaq~wp~~l----~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~ 188 (519)
T KOG0331|consen 113 KPTPIQAQGWPIAL----SGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF 188 (519)
T ss_pred CCchhhhcccceec----cCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 67778877776665 789999999999999998 45667676652 123456 8999999776 8888899999
Q ss_pred cCCCe--EEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhH--hhhhccCcceEecchhcccCC--cch
Q 000684 249 LPTMN--VIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDK--AVLSKIKWNYLMVDEAHRLKN--SEA 322 (1352)
Q Consensus 249 ~p~l~--vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~--~~L~~i~w~~lIVDEAHrlKN--~~S 322 (1352)
...+. .+|++|.......+++.+ ..++|+|+|+..+.... ..+.--...|+|+|||++|.. ...
T Consensus 189 ~~~~~~~~~cvyGG~~~~~Q~~~l~----------~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~ 258 (519)
T KOG0331|consen 189 GKSLRLRSTCVYGGAPKGPQLRDLE----------RGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEP 258 (519)
T ss_pred cCCCCccEEEEeCCCCccHHHHHHh----------cCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHH
Confidence 86654 777777776666665543 36899999999987643 344445789999999999954 567
Q ss_pred HHHHHHHcc-cccC-eEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhh
Q 000684 323 QLYTTLSEF-STKN-KLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRII 400 (1352)
Q Consensus 323 kl~~aL~~l-~~~~-rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k 400 (1352)
++-+++..+ .+.. .++-|+|= + .+ +|.+.
T Consensus 259 qI~~Il~~i~~~~rQtlm~saTw-p---~~---------------------------------------------v~~lA 289 (519)
T KOG0331|consen 259 QIRKILSQIPRPDRQTLMFSATW-P---KE---------------------------------------------VRQLA 289 (519)
T ss_pred HHHHHHHhcCCCcccEEEEeeec-c---HH---------------------------------------------HHHHH
Confidence 788888888 4443 45556662 0 00 01111
Q ss_pred HhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCC
Q 000684 401 KDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSIN 480 (1352)
Q Consensus 401 ~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~ 480 (1352)
.+... .| ....+... ..+ .....+.++-
T Consensus 290 ~~fl~-~~-~~i~ig~~---~~~------------------------~a~~~i~qiv----------------------- 317 (519)
T KOG0331|consen 290 EDFLN-NP-IQINVGNK---KEL------------------------KANHNIRQIV----------------------- 317 (519)
T ss_pred HHHhc-Cc-eEEEecch---hhh------------------------hhhcchhhhh-----------------------
Confidence 11111 11 11111110 000 0000111111
Q ss_pred chhhHHHHhhhcchhHHHHHHHHHhh-hcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCC
Q 000684 481 DTSKLERIILSSGKLVILDKLLVRLH-ETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPG 559 (1352)
Q Consensus 481 ~~~~l~~li~~SgKl~~L~kLL~~l~-~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~ 559 (1352)
..+....|...|.++|..+. ..+.||||||+..+++|.|+.+|+..+++++-|||..++.+|..+++.|.++
T Consensus 318 ------e~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG- 390 (519)
T KOG0331|consen 318 ------EVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREG- 390 (519)
T ss_pred ------hhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccC-
Confidence 12224568888888888887 4566999999999999999999999999999999999999999999999884
Q ss_pred CCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecC
Q 000684 560 SEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTS 620 (1352)
Q Consensus 560 s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~ 620 (1352)
.+-+|++|+++++|||+...|+||.||+|-|...|+||+||.+|.|++-.. |.|++.
T Consensus 391 --~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A--~tfft~ 447 (519)
T KOG0331|consen 391 --KSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTA--ITFFTS 447 (519)
T ss_pred --CcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceE--EEEEeH
Confidence 445999999999999999999999999999999999999999999987655 455553
No 29
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.92 E-value=4.4e-23 Score=253.04 Aligned_cols=315 Identities=19% Similarity=0.319 Sum_probs=218.2
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHH-HHHHHHHHHhcCCCCcEEEEEChhhH-HHHHHHHHHHc---
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQS-VSMLGFLQNAQQIPGPFLVVVPLSTL-SNWAKEFRKWL--- 249 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqa-Ia~l~~L~~~~~~~gp~LIVvP~s~L-~nW~~Ef~kw~--- 249 (1352)
.++.|+|.+++..++ ++.++|+...+|+|||... ++++..+.. .......|||||+..| .||.+++..++
T Consensus 25 ~~~t~iQ~~ai~~~l----~g~dvi~~a~TGsGKT~a~~lpil~~l~~-~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 99 (460)
T PRK11776 25 TEMTPIQAQSLPAIL----AGKDVIAQAKTGSGKTAAFGLGLLQKLDV-KRFRVQALVLCPTRELADQVAKEIRRLARFI 99 (460)
T ss_pred CCCCHHHHHHHHHHh----cCCCEEEECCCCCcHHHHHHHHHHHHhhh-ccCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Confidence 368999999999887 6889999999999999874 444444432 2222348999998655 89999988764
Q ss_pred CCCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHh--hhhccCcceEecchhcccCCcc--hHHH
Q 000684 250 PTMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKA--VLSKIKWNYLMVDEAHRLKNSE--AQLY 325 (1352)
Q Consensus 250 p~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~--~L~~i~w~~lIVDEAHrlKN~~--Skl~ 325 (1352)
+++++..++|+.......... ....+|+|+|++.+..... .+.--.+++|||||||++.... ..+.
T Consensus 100 ~~~~v~~~~Gg~~~~~~~~~l----------~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~ 169 (460)
T PRK11776 100 PNIKVLTLCGGVPMGPQIDSL----------EHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAID 169 (460)
T ss_pred CCcEEEEEECCCChHHHHHHh----------cCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHH
Confidence 568888888876655443332 1367999999998875432 2222357899999999986542 3344
Q ss_pred HHHHccccc-CeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhHhhh
Q 000684 326 TTLSEFSTK-NKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIKDVE 404 (1352)
Q Consensus 326 ~aL~~l~~~-~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~dv~ 404 (1352)
..+..+... ..+++|||+-. .+.. +.. .|.. .|..+. + ...
T Consensus 170 ~i~~~~~~~~q~ll~SAT~~~-~~~~---l~~---------------~~~~----------------~~~~i~-~--~~~ 211 (460)
T PRK11776 170 AIIRQAPARRQTLLFSATYPE-GIAA---ISQ---------------RFQR----------------DPVEVK-V--EST 211 (460)
T ss_pred HHHHhCCcccEEEEEEecCcH-HHHH---HHH---------------HhcC----------------CCEEEE-E--CcC
Confidence 455555433 35889999621 1111 110 0000 000000 0 000
Q ss_pred ccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCchhh
Q 000684 405 KSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDTSK 484 (1352)
Q Consensus 405 ~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~~~ 484 (1352)
...+......+ .+
T Consensus 212 ~~~~~i~~~~~-------------------------------------------------~~------------------ 224 (460)
T PRK11776 212 HDLPAIEQRFY-------------------------------------------------EV------------------ 224 (460)
T ss_pred CCCCCeeEEEE-------------------------------------------------Ee------------------
Confidence 00000000000 00
Q ss_pred HHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcE
Q 000684 485 LERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFC 564 (1352)
Q Consensus 485 l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~v 564 (1352)
....|+..|..+|... .+.++||||+....++.|.+.|...|+.+..++|++++.+|+.+++.|.++. ..
T Consensus 225 -----~~~~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~---~~ 294 (460)
T PRK11776 225 -----SPDERLPALQRLLLHH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRS---CS 294 (460)
T ss_pred -----CcHHHHHHHHHHHHhc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCC---Cc
Confidence 0112555666666543 3568999999999999999999999999999999999999999999999743 45
Q ss_pred EEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCC
Q 000684 565 FLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSK 621 (1352)
Q Consensus 565 fLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~ 621 (1352)
+|++|.++++|||++++++||+||.+.++..++|++||++|.|+... .|.|++.+
T Consensus 295 vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~--ai~l~~~~ 349 (460)
T PRK11776 295 VLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGL--ALSLVAPE 349 (460)
T ss_pred EEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcce--EEEEEchh
Confidence 89999999999999999999999999999999999999999998754 46677764
No 30
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.92 E-value=5.3e-23 Score=253.18 Aligned_cols=318 Identities=20% Similarity=0.281 Sum_probs=216.0
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHH-HHHHHHHHhcCC------CCcEEEEEChhhH-HHHHHHHH
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSV-SMLGFLQNAQQI------PGPFLVVVPLSTL-SNWAKEFR 246 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaI-a~l~~L~~~~~~------~gp~LIVvP~s~L-~nW~~Ef~ 246 (1352)
..++++|.++++.++ +|.++|++..+|+|||+..+ .++..+...... ....|||+|+..| .|+.+++.
T Consensus 108 ~~~~~iQ~~ai~~~~----~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~ 183 (475)
T PRK01297 108 PYCTPIQAQVLGYTL----AGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAA 183 (475)
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHH
Confidence 369999999999876 78999999999999998753 445555432211 2358999998655 88888888
Q ss_pred HHcC--CCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHh--hhhccCcceEecchhcccCCcc-
Q 000684 247 KWLP--TMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKA--VLSKIKWNYLMVDEAHRLKNSE- 321 (1352)
Q Consensus 247 kw~p--~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~--~L~~i~w~~lIVDEAHrlKN~~- 321 (1352)
.++. ++++..++|+.......+.. ....++|+|+|++++..... .+.--...+|||||||++.+..
T Consensus 184 ~l~~~~~~~v~~~~gg~~~~~~~~~~---------~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~ 254 (475)
T PRK01297 184 ALTKYTGLNVMTFVGGMDFDKQLKQL---------EARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGF 254 (475)
T ss_pred HhhccCCCEEEEEEccCChHHHHHHH---------hCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhccc
Confidence 7754 46788888875544333332 12357999999999865322 1112246899999999996543
Q ss_pred -hHHHHHHHccc---ccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhh
Q 000684 322 -AQLYTTLSEFS---TKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILR 397 (1352)
Q Consensus 322 -Skl~~aL~~l~---~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LR 397 (1352)
..+...+..+. ....+++|||.-. ++.++.. .|..
T Consensus 255 ~~~l~~i~~~~~~~~~~q~i~~SAT~~~-~~~~~~~------------------~~~~---------------------- 293 (475)
T PRK01297 255 IPQVRQIIRQTPRKEERQTLLFSATFTD-DVMNLAK------------------QWTT---------------------- 293 (475)
T ss_pred HHHHHHHHHhCCCCCCceEEEEEeecCH-HHHHHHH------------------Hhcc----------------------
Confidence 22344444442 2346888998521 1111100 0000
Q ss_pred hhhHhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCC
Q 000684 398 RIIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDT 477 (1352)
Q Consensus 398 R~k~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~ 477 (1352)
.+. .+.+.... ... .. +. .|-+.
T Consensus 294 ----------~~~---~v~~~~~~------------------~~~-~~----------~~---~~~~~------------ 316 (475)
T PRK01297 294 ----------DPA---IVEIEPEN------------------VAS-DT----------VE---QHVYA------------ 316 (475)
T ss_pred ----------CCE---EEEeccCc------------------CCC-Cc----------cc---EEEEE------------
Confidence 000 00000000 000 00 00 00000
Q ss_pred CCCchhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcC
Q 000684 478 SINDTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNA 557 (1352)
Q Consensus 478 ~~~~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~ 557 (1352)
+..+.|..+|..++.. ....++||||+....++.|...|...|+.+..++|.++..+|..+++.|.+
T Consensus 317 -----------~~~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~ 383 (475)
T PRK01297 317 -----------VAGSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFRE 383 (475)
T ss_pred -----------ecchhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhC
Confidence 0123455666666653 235699999999999999999999999999999999999999999999987
Q ss_pred CCCCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCC
Q 000684 558 PGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSK 621 (1352)
Q Consensus 558 ~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~ 621 (1352)
+ ...+|++|+++++|||+.++|+||+||.++++..++|++||++|.|+...+ +.|++.+
T Consensus 384 G---~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~--i~~~~~~ 442 (475)
T PRK01297 384 G---KIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVS--ISFAGED 442 (475)
T ss_pred C---CCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceE--EEEecHH
Confidence 4 345899999999999999999999999999999999999999999987544 4556544
No 31
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=5.4e-23 Score=252.51 Aligned_cols=308 Identities=17% Similarity=0.180 Sum_probs=211.8
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChh-hHHHHHHHHHHHcCCCe
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLS-TLSNWAKEFRKWLPTMN 253 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s-~L~nW~~Ef~kw~p~l~ 253 (1352)
..++|+|.++++-++ .+.++++..+||.|||+..+.- .+. ..+..|||+|+. ++.++...+... ++.
T Consensus 10 ~~~r~~Q~~ai~~~l----~g~dvlv~apTGsGKTl~y~lp--~l~----~~~~~lVi~P~~~L~~dq~~~l~~~--gi~ 77 (470)
T TIGR00614 10 SSFRPVQLEVINAVL----LGRDCFVVMPTGGGKSLCYQLP--ALC----SDGITLVISPLISLMEDQVLQLKAS--GIP 77 (470)
T ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCCcHhHHHHHH--HHH----cCCcEEEEecHHHHHHHHHHHHHHc--CCc
Confidence 479999999999887 6789999999999999864322 222 246789999985 557788888765 566
Q ss_pred EEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHh---hh-hccCcceEecchhcccCCcch-------
Q 000684 254 VIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKA---VL-SKIKWNYLMVDEAHRLKNSEA------- 322 (1352)
Q Consensus 254 vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~---~L-~~i~w~~lIVDEAHrlKN~~S------- 322 (1352)
+..+.|+.........+.-. ....++++++|++.+..... .+ ......+|||||||.+.....
T Consensus 78 ~~~l~~~~~~~~~~~i~~~~------~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~ 151 (470)
T TIGR00614 78 ATFLNSSQSKEQQKNVLTDL------KDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYK 151 (470)
T ss_pred EEEEeCCCCHHHHHHHHHHH------hcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHH
Confidence 66666665444322111111 23368999999999865432 23 344789999999999864321
Q ss_pred HHHHHHHcccccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhHh
Q 000684 323 QLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIKD 402 (1352)
Q Consensus 323 kl~~aL~~l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~d 402 (1352)
.+......+.....++|||||-.....++...+.+-.|..+.. .|.
T Consensus 152 ~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~------s~~---------------------------- 197 (470)
T TIGR00614 152 ALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCT------SFD---------------------------- 197 (470)
T ss_pred HHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC------CCC----------------------------
Confidence 1222233455566899999996554444444443322211100 000
Q ss_pred hhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCch
Q 000684 403 VEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDT 482 (1352)
Q Consensus 403 v~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~ 482 (1352)
-|.. ...+. ..
T Consensus 198 ----r~nl-~~~v~------------------------------------------------------~~---------- 208 (470)
T TIGR00614 198 ----RPNL-YYEVR------------------------------------------------------RK---------- 208 (470)
T ss_pred ----CCCc-EEEEE------------------------------------------------------eC----------
Confidence 0000 00000 00
Q ss_pred hhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCC
Q 000684 483 SKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSED 562 (1352)
Q Consensus 483 ~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~ 562 (1352)
.+..+..|..++.. ...+.++||||......+.|...|...|+.+..++|+++..+|..+++.|..+ .
T Consensus 209 --------~~~~~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g---~ 276 (470)
T TIGR00614 209 --------TPKILEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRD---E 276 (470)
T ss_pred --------CccHHHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcC---C
Confidence 00011111222221 23566789999999999999999999999999999999999999999999974 3
Q ss_pred cEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEE
Q 000684 563 FCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIY 615 (1352)
Q Consensus 563 ~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~Vy 615 (1352)
..+|++|.+.|+|||++.+++||+||++.++..+.|++||++|.|+...+.+|
T Consensus 277 ~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 277 IQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred CcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 45899999999999999999999999999999999999999999998776544
No 32
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.92 E-value=7.7e-23 Score=250.35 Aligned_cols=323 Identities=18% Similarity=0.270 Sum_probs=215.2
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHH-HHHHHHHHhcC-----CCCcEEEEEChhhH-HHHHHHHHH
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSV-SMLGFLQNAQQ-----IPGPFLVVVPLSTL-SNWAKEFRK 247 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaI-a~l~~L~~~~~-----~~gp~LIVvP~s~L-~nW~~Ef~k 247 (1352)
..+.|+|.+++.-++ .+.++|+...+|+|||+..+ .++..+..... ....+|||||+..| .||.+++..
T Consensus 22 ~~pt~iQ~~ai~~il----~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~ 97 (456)
T PRK10590 22 REPTPIQQQAIPAVL----EGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRD 97 (456)
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHH
Confidence 378999999999877 67899999999999999854 44555433211 11248999998655 889999988
Q ss_pred HcC--CCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHh--hhhccCcceEecchhcccCCcc--
Q 000684 248 WLP--TMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKA--VLSKIKWNYLMVDEAHRLKNSE-- 321 (1352)
Q Consensus 248 w~p--~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~--~L~~i~w~~lIVDEAHrlKN~~-- 321 (1352)
++. ++.++.++|........... ...++|+|+|++.+..... .+..-..++|||||||++-...
T Consensus 98 ~~~~~~~~~~~~~gg~~~~~~~~~l----------~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~ 167 (456)
T PRK10590 98 YSKYLNIRSLVVFGGVSINPQMMKL----------RGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFI 167 (456)
T ss_pred HhccCCCEEEEEECCcCHHHHHHHH----------cCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccH
Confidence 864 45666667665443322211 1257999999998865322 2223367899999999986533
Q ss_pred hHHHHHHHccccc-CeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhh
Q 000684 322 AQLYTTLSEFSTK-NKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRII 400 (1352)
Q Consensus 322 Skl~~aL~~l~~~-~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k 400 (1352)
..+...+..+... ..+++|||+-. .+.++.. .+... |..+.-..
T Consensus 168 ~~i~~il~~l~~~~q~l~~SAT~~~-~~~~l~~---~~~~~-------------------------------~~~i~~~~ 212 (456)
T PRK10590 168 HDIRRVLAKLPAKRQNLLFSATFSD-DIKALAE---KLLHN-------------------------------PLEIEVAR 212 (456)
T ss_pred HHHHHHHHhCCccCeEEEEeCCCcH-HHHHHHH---HHcCC-------------------------------CeEEEEec
Confidence 2344445555443 35889999621 1111111 00000 00000000
Q ss_pred HhhhccCCCc-EEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCC
Q 000684 401 KDVEKSLPPK-IERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSI 479 (1352)
Q Consensus 401 ~dv~~~LPpk-~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~ 479 (1352)
.. ..++. ...+..+
T Consensus 213 ~~---~~~~~i~~~~~~~-------------------------------------------------------------- 227 (456)
T PRK10590 213 RN---TASEQVTQHVHFV-------------------------------------------------------------- 227 (456)
T ss_pred cc---ccccceeEEEEEc--------------------------------------------------------------
Confidence 00 00000 0000000
Q ss_pred CchhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCC
Q 000684 480 NDTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPG 559 (1352)
Q Consensus 480 ~~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~ 559 (1352)
....|..+|..++.. ....++||||+.....+.|...|...|+.+..++|+++..+|..+++.|.++
T Consensus 228 ----------~~~~k~~~l~~l~~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g- 294 (456)
T PRK10590 228 ----------DKKRKRELLSQMIGK--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSG- 294 (456)
T ss_pred ----------CHHHHHHHHHHHHHc--CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcC-
Confidence 011123334444432 2346899999999999999999999999999999999999999999999974
Q ss_pred CCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCCCHHHHHHHH
Q 000684 560 SEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILER 630 (1352)
Q Consensus 560 s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~TiEE~Il~r 630 (1352)
...+|++|+++++|||++++++||+||++.++..|+|++||++|.|.+..+ +.|++.+ |..++..
T Consensus 295 --~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~a--i~l~~~~--d~~~~~~ 359 (456)
T PRK10590 295 --DIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEA--LSLVCVD--EHKLLRD 359 (456)
T ss_pred --CCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeE--EEEecHH--HHHHHHH
Confidence 345899999999999999999999999999999999999999999987655 4455543 4444433
No 33
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.92 E-value=6.3e-23 Score=249.03 Aligned_cols=315 Identities=15% Similarity=0.207 Sum_probs=214.0
Q ss_pred CCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHH-HHHHHHHHhcC------CCCcEEEEEChhhH-HHHHHHHHH
Q 000684 176 KLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSV-SMLGFLQNAQQ------IPGPFLVVVPLSTL-SNWAKEFRK 247 (1352)
Q Consensus 176 ~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaI-a~l~~L~~~~~------~~gp~LIVvP~s~L-~nW~~Ef~k 247 (1352)
.+.|.|.+++.-++ +|.++|+..++|+|||+..+ +++..+..... ....+|||||+..| .|+.+++..
T Consensus 30 ~pt~iQ~~aip~il----~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~ 105 (423)
T PRK04837 30 NCTPIQALALPLTL----AGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEP 105 (423)
T ss_pred CCCHHHHHHHHHHh----CCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHH
Confidence 68899999998876 78999999999999999864 34444443211 12348999998655 888888887
Q ss_pred HcC--CCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhH--hhhhccCcceEecchhcccCCcc--
Q 000684 248 WLP--TMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDK--AVLSKIKWNYLMVDEAHRLKNSE-- 321 (1352)
Q Consensus 248 w~p--~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~--~~L~~i~w~~lIVDEAHrlKN~~-- 321 (1352)
++. ++++.+++|........... ...++|+|+|++.+.... ..+.--.+.+|||||||++....
T Consensus 106 l~~~~~~~v~~~~gg~~~~~~~~~l----------~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~ 175 (423)
T PRK04837 106 LAQATGLKLGLAYGGDGYDKQLKVL----------ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFI 175 (423)
T ss_pred HhccCCceEEEEECCCCHHHHHHHh----------cCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccH
Confidence 753 57777777765543332221 125799999999886542 22333467899999999986533
Q ss_pred hHHHHHHHcccc---cCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhh
Q 000684 322 AQLYTTLSEFST---KNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRR 398 (1352)
Q Consensus 322 Skl~~aL~~l~~---~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR 398 (1352)
..+...+..+.. ...+++|||.-. .+.++.. .+
T Consensus 176 ~~i~~i~~~~~~~~~~~~~l~SAT~~~-~~~~~~~------------------~~------------------------- 211 (423)
T PRK04837 176 KDIRWLFRRMPPANQRLNMLFSATLSY-RVRELAF------------------EH------------------------- 211 (423)
T ss_pred HHHHHHHHhCCCccceeEEEEeccCCH-HHHHHHH------------------HH-------------------------
Confidence 233334444432 234788998521 1111100 00
Q ss_pred hhHhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCC
Q 000684 399 IIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTS 478 (1352)
Q Consensus 399 ~k~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~ 478 (1352)
+..... +.+ .+.. ..+.. + .+.++.
T Consensus 212 --------~~~p~~--i~v--~~~~------------------~~~~~---------i----~~~~~~------------ 236 (423)
T PRK04837 212 --------MNNPEY--VEV--EPEQ------------------KTGHR---------I----KEELFY------------ 236 (423)
T ss_pred --------CCCCEE--EEE--cCCC------------------cCCCc---------e----eEEEEe------------
Confidence 000000 000 0000 00000 0 000000
Q ss_pred CCchhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCC
Q 000684 479 INDTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAP 558 (1352)
Q Consensus 479 ~~~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~ 558 (1352)
.....|+.+|..++.. ....++||||+....++.|...|...|+.+..++|+++..+|..+++.|+++
T Consensus 237 ----------~~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g 304 (423)
T PRK04837 237 ----------PSNEEKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRG 304 (423)
T ss_pred ----------CCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcC
Confidence 0012355666666654 2457899999999999999999999999999999999999999999999984
Q ss_pred CCCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecC
Q 000684 559 GSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTS 620 (1352)
Q Consensus 559 ~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~ 620 (1352)
...+|++|+++++|||++.+++||+||+++++..|+|++||++|.|+...+ +.|++.
T Consensus 305 ---~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~a--i~~~~~ 361 (423)
T PRK04837 305 ---DLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHS--ISLACE 361 (423)
T ss_pred ---CCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeE--EEEeCH
Confidence 345999999999999999999999999999999999999999999987654 556665
No 34
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.92 E-value=8.6e-23 Score=253.22 Aligned_cols=317 Identities=18% Similarity=0.208 Sum_probs=212.9
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHH-HHHHHHHHhc------CCCCcEEEEEChhhH-HHHHHHHH
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSV-SMLGFLQNAQ------QIPGPFLVVVPLSTL-SNWAKEFR 246 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaI-a~l~~L~~~~------~~~gp~LIVvP~s~L-~nW~~Ef~ 246 (1352)
..++|+|.+++..++ .|.++|+..+||+|||+..+ .++..+.... ......|||+|+..| .|+.+++.
T Consensus 142 ~~ptpiQ~~aip~il----~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~ 217 (518)
T PLN00206 142 EFPTPIQMQAIPAAL----SGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAK 217 (518)
T ss_pred CCCCHHHHHHHHHHh----cCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHH
Confidence 479999999999887 78999999999999999854 4454443211 122358999998655 78888888
Q ss_pred HHcCC--CeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHh--hhhccCcceEecchhcccCCc--
Q 000684 247 KWLPT--MNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKA--VLSKIKWNYLMVDEAHRLKNS-- 320 (1352)
Q Consensus 247 kw~p~--l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~--~L~~i~w~~lIVDEAHrlKN~-- 320 (1352)
.+... +.++++.|+......+... ...++|+|+|++.+..... .+..-...+|||||||++...
T Consensus 218 ~l~~~~~~~~~~~~gG~~~~~q~~~l----------~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf 287 (518)
T PLN00206 218 VLGKGLPFKTALVVGGDAMPQQLYRI----------QQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGF 287 (518)
T ss_pred HHhCCCCceEEEEECCcchHHHHHHh----------cCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcch
Confidence 87654 4555555544333222211 1257999999998754321 222235689999999998543
Q ss_pred chHHHHHHHcccccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhh
Q 000684 321 EAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRII 400 (1352)
Q Consensus 321 ~Skl~~aL~~l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k 400 (1352)
...+...+..+.....+++|||.-. .+..+ ...+..+. .++...
T Consensus 288 ~~~i~~i~~~l~~~q~l~~SATl~~-~v~~l---~~~~~~~~-------------------------------~~i~~~- 331 (518)
T PLN00206 288 RDQVMQIFQALSQPQVLLFSATVSP-EVEKF---ASSLAKDI-------------------------------ILISIG- 331 (518)
T ss_pred HHHHHHHHHhCCCCcEEEEEeeCCH-HHHHH---HHHhCCCC-------------------------------EEEEeC-
Confidence 3345556666666778999999621 11111 11110000 000000
Q ss_pred HhhhccCCCc--EEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCC
Q 000684 401 KDVEKSLPPK--IERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTS 478 (1352)
Q Consensus 401 ~dv~~~LPpk--~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~ 478 (1352)
....+.. ....+.+
T Consensus 332 ---~~~~~~~~v~q~~~~~------------------------------------------------------------- 347 (518)
T PLN00206 332 ---NPNRPNKAVKQLAIWV------------------------------------------------------------- 347 (518)
T ss_pred ---CCCCCCcceeEEEEec-------------------------------------------------------------
Confidence 0000000 0000000
Q ss_pred CCchhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHh-cCCcEEEEeCCCCHHHHHHHHHHhcC
Q 000684 479 INDTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSY-KGFQFQRLDGSTKAELRHQAMDHFNA 557 (1352)
Q Consensus 479 ~~~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~-~g~~~~rldGs~~~~eR~~~Id~Fn~ 557 (1352)
....|...|.++|........++|||++....++.|...|.. .|+.+..++|+++..+|..+++.|.+
T Consensus 348 -----------~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~ 416 (518)
T PLN00206 348 -----------ETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLV 416 (518)
T ss_pred -----------cchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHC
Confidence 011123334445544434446899999999999999999974 69999999999999999999999998
Q ss_pred CCCCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCC
Q 000684 558 PGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSK 621 (1352)
Q Consensus 558 ~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~ 621 (1352)
+. .-+|++|.++++|||+..+++||+||++.++..|+|++||++|.|....+ +.|++.+
T Consensus 417 G~---~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~a--i~f~~~~ 475 (518)
T PLN00206 417 GE---VPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTA--IVFVNEE 475 (518)
T ss_pred CC---CCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEE--EEEEchh
Confidence 43 34899999999999999999999999999999999999999999976544 5566654
No 35
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.91 E-value=3.8e-22 Score=250.83 Aligned_cols=326 Identities=19% Similarity=0.255 Sum_probs=221.1
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHH-HHHHHHHHHhcCCCCcEEEEEChhhH-HHHHHHHHHHc---
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQS-VSMLGFLQNAQQIPGPFLVVVPLSTL-SNWAKEFRKWL--- 249 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqa-Ia~l~~L~~~~~~~gp~LIVvP~s~L-~nW~~Ef~kw~--- 249 (1352)
.++.|+|.+++..++ .+.++|+...||+|||++. +.++..+... .....+|||||+..| .||..++..+.
T Consensus 27 ~~ptpiQ~~ai~~ll----~g~dvl~~ApTGsGKT~af~lpll~~l~~~-~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~ 101 (629)
T PRK11634 27 EKPSPIQAECIPHLL----NGRDVLGMAQTGSGKTAAFSLPLLHNLDPE-LKAPQILVLAPTRELAVQVAEAMTDFSKHM 101 (629)
T ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCCcHHHHHHHHHHHHhhhc-cCCCeEEEEeCcHHHHHHHHHHHHHHHhhc
Confidence 479999999999887 6789999999999999985 4455554332 223357999998554 89999888764
Q ss_pred CCCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHh--hhhccCcceEecchhcccCCcc--hHHH
Q 000684 250 PTMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKA--VLSKIKWNYLMVDEAHRLKNSE--AQLY 325 (1352)
Q Consensus 250 p~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~--~L~~i~w~~lIVDEAHrlKN~~--Skl~ 325 (1352)
++++++.++|.......++.. ....+|||+|++.+..... .+.--...+|||||||.+.+.. ..+.
T Consensus 102 ~~i~v~~~~gG~~~~~q~~~l----------~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~ 171 (629)
T PRK11634 102 RGVNVVALYGGQRYDVQLRAL----------RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVE 171 (629)
T ss_pred CCceEEEEECCcCHHHHHHHh----------cCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHH
Confidence 578888888776544433321 1257899999998875422 2223356889999999986543 3455
Q ss_pred HHHHcccccC-eEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhHhhh
Q 000684 326 TTLSEFSTKN-KLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIKDVE 404 (1352)
Q Consensus 326 ~aL~~l~~~~-rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~dv~ 404 (1352)
..+..+.... .+++|||.- ..+.++. ..|.
T Consensus 172 ~Il~~lp~~~q~llfSAT~p-~~i~~i~------------------~~~l------------------------------ 202 (629)
T PRK11634 172 TIMAQIPEGHQTALFSATMP-EAIRRIT------------------RRFM------------------------------ 202 (629)
T ss_pred HHHHhCCCCCeEEEEEccCC-hhHHHHH------------------HHHc------------------------------
Confidence 5666665444 488899851 1111111 0110
Q ss_pred ccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCchhh
Q 000684 405 KSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDTSK 484 (1352)
Q Consensus 405 ~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~~~ 484 (1352)
..... +.+.-.. .... ...+-|+.
T Consensus 203 ---~~~~~--i~i~~~~-------------------~~~~--------------~i~q~~~~------------------ 226 (629)
T PRK11634 203 ---KEPQE--VRIQSSV-------------------TTRP--------------DISQSYWT------------------ 226 (629)
T ss_pred ---CCCeE--EEccCcc-------------------ccCC--------------ceEEEEEE------------------
Confidence 00000 0000000 0000 00000000
Q ss_pred HHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcE
Q 000684 485 LERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFC 564 (1352)
Q Consensus 485 l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~v 564 (1352)
+...-|...|..+|.. ....++||||......+.|..+|...|+....++|.+++.+|..++++|..+ ...
T Consensus 227 ----v~~~~k~~~L~~~L~~--~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G---~~~ 297 (629)
T PRK11634 227 ----VWGMRKNEALVRFLEA--EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDG---RLD 297 (629)
T ss_pred ----echhhHHHHHHHHHHh--cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCC---CCC
Confidence 0012244555555543 2346899999999999999999999999999999999999999999999984 345
Q ss_pred EEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCCCHHHHHHHHHHH
Q 000684 565 FLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKK 633 (1352)
Q Consensus 565 fLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~TiEE~Il~ra~~ 633 (1352)
+||+|++++.|||++.+++||+||.+.++..|+|++||++|.|....+ +-|++. -|..++....+
T Consensus 298 ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~a--i~~v~~--~e~~~l~~ie~ 362 (629)
T PRK11634 298 ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRA--LLFVEN--RERRLLRNIER 362 (629)
T ss_pred EEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceE--EEEech--HHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987654 334443 25555555444
No 36
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=7.5e-23 Score=229.46 Aligned_cols=323 Identities=24% Similarity=0.310 Sum_probs=234.0
Q ss_pred CCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHH-HHHHHHHHHHhcCCCCcEEEEEChhhH-HHHHHHHHHHcC--C
Q 000684 176 KLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQ-SVSMLGFLQNAQQIPGPFLVVVPLSTL-SNWAKEFRKWLP--T 251 (1352)
Q Consensus 176 ~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlq-aIa~l~~L~~~~~~~gp~LIVvP~s~L-~nW~~Ef~kw~p--~ 251 (1352)
.+.+.|.+++-..+ .|..||.+.|+|+|||.. +|.++..|...... --.||++|..-| .|....|+.... +
T Consensus 83 ~PT~IQ~~aiP~~L----~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~-~~~lVLtPtRELA~QI~e~fe~Lg~~ig 157 (476)
T KOG0330|consen 83 KPTKIQSEAIPVAL----GGRDVIGLAETGSGKTGAFALPILQRLLQEPKL-FFALVLTPTRELAQQIAEQFEALGSGIG 157 (476)
T ss_pred CCchhhhhhcchhh----CCCcEEEEeccCCCchhhhHHHHHHHHHcCCCC-ceEEEecCcHHHHHHHHHHHHHhccccC
Confidence 56778999998887 789999999999999998 77888888875432 236999999888 555666777643 4
Q ss_pred CeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhh---hhccCcceEecchhcccCCcc--hHHHH
Q 000684 252 MNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAV---LSKIKWNYLMVDEAHRLKNSE--AQLYT 326 (1352)
Q Consensus 252 l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~---L~~i~w~~lIVDEAHrlKN~~--Skl~~ 326 (1352)
+.+.++.|...-.....+. ..+.+|+|.|+..+...... |+--...++|+|||+|+.|.+ -.+..
T Consensus 158 lr~~~lvGG~~m~~q~~~L----------~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ 227 (476)
T KOG0330|consen 158 LRVAVLVGGMDMMLQANQL----------SKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDY 227 (476)
T ss_pred eEEEEEecCchHHHHHHHh----------hcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHH
Confidence 7888889988776655442 23789999999999876542 222356789999999998864 46777
Q ss_pred HHHcccccCe-EEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhHhhhc
Q 000684 327 TLSEFSTKNK-LLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIKDVEK 405 (1352)
Q Consensus 327 aL~~l~~~~r-lLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~dv~~ 405 (1352)
+|..+....+ +|.|||- ..++.+| . ...
T Consensus 228 ILk~ip~erqt~LfsATM-t~kv~kL------------------------------------~----ras---------- 256 (476)
T KOG0330|consen 228 ILKVIPRERQTFLFSATM-TKKVRKL------------------------------------Q----RAS---------- 256 (476)
T ss_pred HHHhcCccceEEEEEeec-chhhHHH------------------------------------H----hhc----------
Confidence 8888876666 5567773 1111111 1 000
Q ss_pred cCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCchhhH
Q 000684 406 SLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDTSKL 485 (1352)
Q Consensus 406 ~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~~~l 485 (1352)
|-.. +.|.-+ +....+-.|.+ -|||-.
T Consensus 257 -l~~p----~~v~~s---------------------------~ky~tv~~lkQ----~ylfv~----------------- 283 (476)
T KOG0330|consen 257 -LDNP----VKVAVS---------------------------SKYQTVDHLKQ----TYLFVP----------------- 283 (476)
T ss_pred -cCCC----eEEecc---------------------------chhcchHHhhh----heEecc-----------------
Confidence 0000 001000 01111111221 133221
Q ss_pred HHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEE
Q 000684 486 ERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCF 565 (1352)
Q Consensus 486 ~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vf 565 (1352)
.--|-..|..||..+ .|..+||||......+.++-.|+..|+....|+|.|++..|.-+++.|++. .+-+
T Consensus 284 -----~k~K~~yLV~ll~e~--~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~---~r~i 353 (476)
T KOG0330|consen 284 -----GKDKDTYLVYLLNEL--AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAG---ARSI 353 (476)
T ss_pred -----ccccchhHHHHHHhh--cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhcc---CCcE
Confidence 111334555666654 467899999999999999999999999999999999999999999999984 3458
Q ss_pred EeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCCCHHHHHHHHH
Q 000684 566 LLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERA 631 (1352)
Q Consensus 566 LLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~TiEE~Il~ra 631 (1352)
|++|++|++|+|++.+|+||+||.|-+...|++|.||+.|.|. .-.+..||+. +|-..+++.
T Consensus 354 Lv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGr--sG~~ItlVtq--yDve~~qrI 415 (476)
T KOG0330|consen 354 LVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGR--SGKAITLVTQ--YDVELVQRI 415 (476)
T ss_pred EEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCC--CcceEEEEeh--hhhHHHHHH
Confidence 9999999999999999999999999999999999999999994 4456889998 555555543
No 37
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.91 E-value=4.9e-22 Score=242.15 Aligned_cols=314 Identities=19% Similarity=0.246 Sum_probs=212.9
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHH-HHHHHHHHhc---CCCCcEEEEEChhh-HHHHHHHHHHHc
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSV-SMLGFLQNAQ---QIPGPFLVVVPLST-LSNWAKEFRKWL 249 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaI-a~l~~L~~~~---~~~gp~LIVvP~s~-L~nW~~Ef~kw~ 249 (1352)
.+++++|.+++..++ .+.++|+...+|+|||+.++ .++..+.... .....+|||+|... ..|+.+.+..++
T Consensus 22 ~~p~~iQ~~ai~~~~----~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~ 97 (434)
T PRK11192 22 TRPTAIQAEAIPPAL----DGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELA 97 (434)
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHH
Confidence 468999999999887 67899999999999998854 3455554321 11245899999865 488888887775
Q ss_pred C--CCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhH--hhhhccCcceEecchhcccCCcc--hH
Q 000684 250 P--TMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDK--AVLSKIKWNYLMVDEAHRLKNSE--AQ 323 (1352)
Q Consensus 250 p--~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~--~~L~~i~w~~lIVDEAHrlKN~~--Sk 323 (1352)
. ++.+.+++|+.........+ ....+|+|+|++.+.... ..+..-.+++|||||||++.... ..
T Consensus 98 ~~~~~~v~~~~gg~~~~~~~~~l----------~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~ 167 (434)
T PRK11192 98 KHTHLDIATITGGVAYMNHAEVF----------SENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQD 167 (434)
T ss_pred ccCCcEEEEEECCCCHHHHHHHh----------cCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHH
Confidence 3 57888888876554432211 125789999999887542 22233357899999999986543 23
Q ss_pred HHHHHHcccc-cCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhHh
Q 000684 324 LYTTLSEFST-KNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIKD 402 (1352)
Q Consensus 324 l~~aL~~l~~-~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~d 402 (1352)
+...+..+.. ...+++|||+-...+.++.. .+.
T Consensus 168 ~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~------------------~~~---------------------------- 201 (434)
T PRK11192 168 IETIAAETRWRKQTLLFSATLEGDAVQDFAE------------------RLL---------------------------- 201 (434)
T ss_pred HHHHHHhCccccEEEEEEeecCHHHHHHHHH------------------HHc----------------------------
Confidence 3333333332 23488999974222221111 100
Q ss_pred hhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCch
Q 000684 403 VEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDT 482 (1352)
Q Consensus 403 v~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~ 482 (1352)
..... +.+..+... ... ..| +.... .
T Consensus 202 -----~~~~~--i~~~~~~~~-------------------~~~--------------i~~-~~~~~-----------~-- 227 (434)
T PRK11192 202 -----NDPVE--VEAEPSRRE-------------------RKK--------------IHQ-WYYRA-----------D-- 227 (434)
T ss_pred -----cCCEE--EEecCCccc-------------------ccC--------------ceE-EEEEe-----------C--
Confidence 00000 000000000 000 000 00000 0
Q ss_pred hhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCC
Q 000684 483 SKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSED 562 (1352)
Q Consensus 483 ~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~ 562 (1352)
....|..+|..++.. ....++||||+....++.|...|...|+.+..++|+++..+|..+++.|..+ .
T Consensus 228 -------~~~~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G---~ 295 (434)
T PRK11192 228 -------DLEHKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDG---R 295 (434)
T ss_pred -------CHHHHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCC---C
Confidence 012345555555542 2457899999999999999999999999999999999999999999999974 4
Q ss_pred cEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEE
Q 000684 563 FCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNI 614 (1352)
Q Consensus 563 ~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~V 614 (1352)
..+|++|+++++|||++.+++||+||.++++..++|++||++|.|....+.+
T Consensus 296 ~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 296 VNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred CcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEE
Confidence 4599999999999999999999999999999999999999999998766543
No 38
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.91 E-value=4.1e-22 Score=243.78 Aligned_cols=402 Identities=19% Similarity=0.240 Sum_probs=236.3
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhH-HHHHHHHHHHcCCC
Q 000684 174 GGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTL-SNWAKEFRKWLPTM 252 (1352)
Q Consensus 174 ~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L-~nW~~Ef~kw~p~l 252 (1352)
...||+||.+-+.-.+ +.|+|+|..||+|||.+|+-++...++... .+.+++.||...| .|-...|...+-.-
T Consensus 60 ~~~lR~YQ~eivq~AL-----gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p-~~KiVF~aP~~pLv~QQ~a~~~~~~~~~ 133 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-----GKNTIIALPTGSGKTFIAAVIMKNHFEWRP-KGKVVFLAPTRPLVNQQIACFSIYLIPY 133 (746)
T ss_pred cccccHHHHHHhHHhh-----cCCeEEEeecCCCccchHHHHHHHHHhcCC-cceEEEeeCCchHHHHHHHHHhhccCcc
Confidence 4689999999998775 689999999999999998776665555443 3889999999655 66667887776445
Q ss_pred eEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhhc---cCcceEecchhcccCCc--chHHHHH
Q 000684 253 NVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSK---IKWNYLMVDEAHRLKNS--EAQLYTT 327 (1352)
Q Consensus 253 ~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~---i~w~~lIVDEAHrlKN~--~Skl~~a 327 (1352)
.+....|+...+.-.. + .....+|++.|++++.++...-.. -.|.+||||||||.... .+...+.
T Consensus 134 ~~T~~l~~~~~~~~r~--~--------i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~ 203 (746)
T KOG0354|consen 134 SVTGQLGDTVPRSNRG--E--------IVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMRE 203 (746)
T ss_pred cceeeccCccCCCchh--h--------hhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHH
Confidence 5566666644433211 1 112568999999999886432222 34899999999997432 2333333
Q ss_pred HHcccc--cCeEEEeccCCCCCHHHHHHHHhhcCCC--CCCChhHHHHHhccccc----------ccHHHHHHHHHhhcc
Q 000684 328 LSEFST--KNKLLITGTPLQNSVEELWALLHFLDHD--KFKSKDDFIQNYKNLSS----------FNENELANLHMELRP 393 (1352)
Q Consensus 328 L~~l~~--~~rlLLTGTPlqNnl~EL~sLL~fL~p~--~f~~~~~F~~~f~~~~~----------~~~~~i~~L~~~L~p 393 (1352)
+...+. ...|+|||||- +++...-+-+.=|... ... .......|..... ........+..+++|
T Consensus 204 ~l~~k~~~~qILgLTASpG-~~~~~v~~~I~~L~asldvr~-~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p 281 (746)
T KOG0354|consen 204 YLDLKNQGNQILGLTASPG-SKLEQVQNVIDNLCASLDVRT-ESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEP 281 (746)
T ss_pred HHHhhhccccEEEEecCCC-ccHHHHHHHHHhhheecccch-hhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHH
Confidence 333332 35689999998 5555544433333222 111 1111233321111 112223456666777
Q ss_pred hhhhhhhHhhhc-cCCC-cEEEE-EEe------cCCHHHHH-HHHHHHHHhHHhh--hccccCchhhHHHHHHHHHH---
Q 000684 394 HILRRIIKDVEK-SLPP-KIERI-LRV------EMSPLQKQ-YYKWILERNFHDL--NKGVRGNQVSLLNIVVELKK--- 458 (1352)
Q Consensus 394 ~~LRR~k~dv~~-~LPp-k~e~i-v~v------~Ls~~Qk~-~Yk~il~~~~~~l--~~~~~~~~~~llnil~~Lrk--- 458 (1352)
++.+-....+.. ..+. ..+.. +.. .....|+- +|-.++.....++ ..+.+ +.+.+..+..
T Consensus 282 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir-----~~~~l~~~~~f~~ 356 (746)
T KOG0354|consen 282 LLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIR-----FVDALDYLEDFYE 356 (746)
T ss_pred HHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchh-----hHHHHhhhhhhcc
Confidence 665443222111 0000 00000 000 00000110 0100000000000 00000 0000000000
Q ss_pred ----------h---cCCccccccccCCCCCCCCCCchhhHHHHh----hhcchhHHHHHHHHHhhh--cCCeEEEEecch
Q 000684 459 ----------C---CNHPFLFESADHGYGGDTSINDTSKLERII----LSSGKLVILDKLLVRLHE--TKHRVLIFSQMV 519 (1352)
Q Consensus 459 ----------~---cnHP~L~~~~e~~~~~~~~~~~~~~l~~li----~~SgKl~~L~kLL~~l~~--~g~KVLIFSq~~ 519 (1352)
+ -.|+++.... ..++++. ...+|+..|.++|..... ...|+|||+.+.
T Consensus 357 e~~~~k~~~~~~e~~~~~~~~~~m-------------~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R 423 (746)
T KOG0354|consen 357 EVALKKYLKLELEARLIRNFTENM-------------NELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETR 423 (746)
T ss_pred ccchhHHHHHHhcchhhHHHHHHH-------------HhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehH
Confidence 0 0011110000 0111111 136799999888887654 457999999999
Q ss_pred hHHHHHHHHHH-h--cCCcEEEEeC--------CCCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEEEEcC
Q 000684 520 RMLDILAEYMS-Y--KGFQFQRLDG--------STKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFD 588 (1352)
Q Consensus 520 ~~ldiL~d~L~-~--~g~~~~rldG--------s~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~D 588 (1352)
..++.|..+|. . .|++...+-| ++++.+.+++|+.|+++ .+.+|++|.+|.+|||+..||.||.||
T Consensus 424 ~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G---~~NvLVATSV~EEGLDI~ec~lVIcYd 500 (746)
T KOG0354|consen 424 ESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDG---EINVLVATSVAEEGLDIGECNLVICYD 500 (746)
T ss_pred HHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCC---CccEEEEecchhccCCcccccEEEEec
Confidence 99999999987 2 2556666655 68889999999999994 445999999999999999999999999
Q ss_pred CCCChhhHHHHhhhhcccCCCceEEEE
Q 000684 589 SDWNPQNDLQAMSRAHRIGQQEVVNIY 615 (1352)
Q Consensus 589 sdWNP~~dlQAigRahRiGQkk~V~Vy 615 (1352)
..-||...+||+|| +|.-+.+-|.++
T Consensus 501 ~~snpIrmIQrrGR-gRa~ns~~vll~ 526 (746)
T KOG0354|consen 501 YSSNPIRMVQRRGR-GRARNSKCVLLT 526 (746)
T ss_pred CCccHHHHHHHhcc-ccccCCeEEEEE
Confidence 99999999999999 887665555433
No 39
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.90 E-value=5.5e-22 Score=247.89 Aligned_cols=316 Identities=17% Similarity=0.258 Sum_probs=213.4
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHH-HHHHHHHhc-----C-CCCcEEEEEChhhH-HHHHHHHH
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVS-MLGFLQNAQ-----Q-IPGPFLVVVPLSTL-SNWAKEFR 246 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa-~l~~L~~~~-----~-~~gp~LIVvP~s~L-~nW~~Ef~ 246 (1352)
..+.|.|.+++..++ .+.++|+...+|+|||+..+. ++..+.... . ....+|||||+..| .|+..++.
T Consensus 30 ~~ptpiQ~~~ip~~l----~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~ 105 (572)
T PRK04537 30 TRCTPIQALTLPVAL----PGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAV 105 (572)
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHH
Confidence 378999999999887 789999999999999988644 444443211 1 12458999998555 88999998
Q ss_pred HHcCC--CeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHh---hhhccCcceEecchhcccCCcc
Q 000684 247 KWLPT--MNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKA---VLSKIKWNYLMVDEAHRLKNSE 321 (1352)
Q Consensus 247 kw~p~--l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~---~L~~i~w~~lIVDEAHrlKN~~ 321 (1352)
++... +.+.+++|........... ...++|+|+|++.+..... .+......+|||||||++-...
T Consensus 106 ~l~~~~~i~v~~l~Gg~~~~~q~~~l----------~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~g 175 (572)
T PRK04537 106 KFGADLGLRFALVYGGVDYDKQRELL----------QQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLG 175 (572)
T ss_pred HHhccCCceEEEEECCCCHHHHHHHH----------hCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcc
Confidence 88654 5677777766543322211 1257999999998876432 2333356889999999985432
Q ss_pred --hHHHHHHHccc---ccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhh
Q 000684 322 --AQLYTTLSEFS---TKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHIL 396 (1352)
Q Consensus 322 --Skl~~aL~~l~---~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~L 396 (1352)
..+...+..+. ....+++|||.-. .+.++.. .++.
T Consensus 176 f~~~i~~il~~lp~~~~~q~ll~SATl~~-~v~~l~~--~~l~------------------------------------- 215 (572)
T PRK04537 176 FIKDIRFLLRRMPERGTRQTLLFSATLSH-RVLELAY--EHMN------------------------------------- 215 (572)
T ss_pred hHHHHHHHHHhcccccCceEEEEeCCccH-HHHHHHH--HHhc-------------------------------------
Confidence 22333444443 2345888999521 1111100 0000
Q ss_pred hhhhHhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCC
Q 000684 397 RRIIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGD 476 (1352)
Q Consensus 397 RR~k~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~ 476 (1352)
-|. ...+... . .... .+++. +.+.
T Consensus 216 ----------~p~--~i~v~~~--~--------------------~~~~---------~i~q~----~~~~--------- 239 (572)
T PRK04537 216 ----------EPE--KLVVETE--T--------------------ITAA---------RVRQR----IYFP--------- 239 (572)
T ss_pred ----------CCc--EEEeccc--c--------------------cccc---------ceeEE----EEec---------
Confidence 000 0000000 0 0000 00000 0000
Q ss_pred CCCCchhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhc
Q 000684 477 TSINDTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFN 556 (1352)
Q Consensus 477 ~~~~~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn 556 (1352)
....|+.+|..++.. ..+.++||||+....++.|.++|...|+.+..++|+++..+|..+++.|.
T Consensus 240 -------------~~~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr 304 (572)
T PRK04537 240 -------------ADEEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQ 304 (572)
T ss_pred -------------CHHHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHH
Confidence 011244455555543 35779999999999999999999999999999999999999999999998
Q ss_pred CCCCCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecC
Q 000684 557 APGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTS 620 (1352)
Q Consensus 557 ~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~ 620 (1352)
+. ...+||+|+++++|||+..+++||+||.++++..|+|++||++|.|....+ +.|++.
T Consensus 305 ~G---~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~a--i~~~~~ 363 (572)
T PRK04537 305 KG---QLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDA--ISFACE 363 (572)
T ss_pred cC---CCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceE--EEEecH
Confidence 73 445999999999999999999999999999999999999999999987655 445654
No 40
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.90 E-value=6.6e-22 Score=249.42 Aligned_cols=304 Identities=19% Similarity=0.178 Sum_probs=208.9
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEECh-hhHHHHHHHHHHHcCCCe
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPL-STLSNWAKEFRKWLPTMN 253 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~-s~L~nW~~Ef~kw~p~l~ 253 (1352)
..++|+|.++++-++ .+.++++...||.|||+..+.. .+.. .+.+|||+|+ +++.++...+... ++.
T Consensus 24 ~~~r~~Q~~ai~~il----~g~dvlv~apTGsGKTl~y~lp--al~~----~g~tlVisPl~sL~~dqv~~l~~~--gi~ 91 (607)
T PRK11057 24 QQFRPGQQEIIDAVL----SGRDCLVVMPTGGGKSLCYQIP--ALVL----DGLTLVVSPLISLMKDQVDQLLAN--GVA 91 (607)
T ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHH--HHHc----CCCEEEEecHHHHHHHHHHHHHHc--CCc
Confidence 479999999999877 6889999999999999865322 2222 3578999998 5557788888764 566
Q ss_pred EEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhh--HhhhhccCcceEecchhcccCCcch-------HH
Q 000684 254 VIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKD--KAVLSKIKWNYLMVDEAHRLKNSEA-------QL 324 (1352)
Q Consensus 254 vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d--~~~L~~i~w~~lIVDEAHrlKN~~S-------kl 324 (1352)
+.++.++.........+.-. .....+++++|++.+... ...+...++++|||||||.+..... .+
T Consensus 92 ~~~~~s~~~~~~~~~~~~~~------~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L 165 (607)
T PRK11057 92 AACLNSTQTREQQLEVMAGC------RTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAAL 165 (607)
T ss_pred EEEEcCCCCHHHHHHHHHHH------hCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHH
Confidence 66666665443322222111 223678999999988743 3345556789999999999864321 22
Q ss_pred HHHHHcccccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhHhhh
Q 000684 325 YTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIKDVE 404 (1352)
Q Consensus 325 ~~aL~~l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~dv~ 404 (1352)
......+.....++||||+-.....++..++.+-.|..+.. .|.
T Consensus 166 ~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~------~~~------------------------------ 209 (607)
T PRK11057 166 GQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS------SFD------------------------------ 209 (607)
T ss_pred HHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEEC------CCC------------------------------
Confidence 22223344556799999986554444444433222211000 000
Q ss_pred ccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCchhh
Q 000684 405 KSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDTSK 484 (1352)
Q Consensus 405 ~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~~~ 484 (1352)
-|.....++
T Consensus 210 --r~nl~~~v~--------------------------------------------------------------------- 218 (607)
T PRK11057 210 --RPNIRYTLV--------------------------------------------------------------------- 218 (607)
T ss_pred --CCcceeeee---------------------------------------------------------------------
Confidence 000000000
Q ss_pred HHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcE
Q 000684 485 LERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFC 564 (1352)
Q Consensus 485 l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~v 564 (1352)
....++..|..++.. ..+.++||||+.....+.+...|...|+.+..+||+++.++|..+++.|..+ ...
T Consensus 219 -----~~~~~~~~l~~~l~~--~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g---~~~ 288 (607)
T PRK11057 219 -----EKFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRD---DLQ 288 (607)
T ss_pred -----eccchHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCC---CCC
Confidence 000011111222221 3567899999999999999999999999999999999999999999999874 345
Q ss_pred EEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEE
Q 000684 565 FLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVN 613 (1352)
Q Consensus 565 fLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~ 613 (1352)
+|++|.+.|.|||++.++.||+||.+.+...+.|++|||+|.|....+.
T Consensus 289 VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~i 337 (607)
T PRK11057 289 IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAM 337 (607)
T ss_pred EEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEE
Confidence 8999999999999999999999999999999999999999999876543
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.90 E-value=5.9e-22 Score=250.06 Aligned_cols=304 Identities=20% Similarity=0.230 Sum_probs=214.4
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEECh-hhHHHHHHHHHHHcCCCe
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPL-STLSNWAKEFRKWLPTMN 253 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~-s~L~nW~~Ef~kw~p~l~ 253 (1352)
.+++|+|.++++-++ .|.+++++..||.|||+..... .+.. .|..|||+|+ +++.++...+... ++.
T Consensus 12 ~~fr~~Q~~~i~~il----~g~dvlv~~PTG~GKTl~y~lp--al~~----~g~~lVisPl~sL~~dq~~~l~~~--gi~ 79 (591)
T TIGR01389 12 DDFRPGQEEIISHVL----DGRDVLVVMPTGGGKSLCYQVP--ALLL----KGLTVVISPLISLMKDQVDQLRAA--GVA 79 (591)
T ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCccHhHHHHHH--HHHc----CCcEEEEcCCHHHHHHHHHHHHHc--CCc
Confidence 479999999999887 6789999999999999876422 2222 4678999998 5668888888875 567
Q ss_pred EEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhh--HhhhhccCcceEecchhcccCCcch-------HH
Q 000684 254 VIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKD--KAVLSKIKWNYLMVDEAHRLKNSEA-------QL 324 (1352)
Q Consensus 254 vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d--~~~L~~i~w~~lIVDEAHrlKN~~S-------kl 324 (1352)
+..++++...........-. .....++++.|++.+... ...+......+|||||||.+..... .+
T Consensus 80 ~~~~~s~~~~~~~~~~~~~l------~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l 153 (591)
T TIGR01389 80 AAYLNSTLSAKEQQDIEKAL------VNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRL 153 (591)
T ss_pred EEEEeCCCCHHHHHHHHHHH------hCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHH
Confidence 77777766544322211110 223678999999988643 3456667899999999999854221 23
Q ss_pred HHHHHcccccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhHhhh
Q 000684 325 YTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIKDVE 404 (1352)
Q Consensus 325 ~~aL~~l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~dv~ 404 (1352)
......+.....+++|||+-.....++...+.+-.+..+.. .|.
T Consensus 154 ~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~------~~~------------------------------ 197 (591)
T TIGR01389 154 GSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFIT------SFD------------------------------ 197 (591)
T ss_pred HHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec------CCC------------------------------
Confidence 33334454555899999986554444444333222111100 000
Q ss_pred ccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCchhh
Q 000684 405 KSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDTSK 484 (1352)
Q Consensus 405 ~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~~~ 484 (1352)
-|.....++
T Consensus 198 --r~nl~~~v~--------------------------------------------------------------------- 206 (591)
T TIGR01389 198 --RPNLRFSVV--------------------------------------------------------------------- 206 (591)
T ss_pred --CCCcEEEEE---------------------------------------------------------------------
Confidence 000000000
Q ss_pred HHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcE
Q 000684 485 LERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFC 564 (1352)
Q Consensus 485 l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~v 564 (1352)
....+...|.++|... .+.++||||......+.|..+|...|+.+..+||+++.++|..+++.|..+ ...
T Consensus 207 -----~~~~~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g---~~~ 276 (591)
T TIGR01389 207 -----KKNNKQKFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYD---DVK 276 (591)
T ss_pred -----eCCCHHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcC---CCc
Confidence 0001222233334332 267899999999999999999999999999999999999999999999874 356
Q ss_pred EEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEE
Q 000684 565 FLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVN 613 (1352)
Q Consensus 565 fLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~ 613 (1352)
+|++|.+.|.|||+++++.||+||++.|+..+.|++|||+|.|+...+.
T Consensus 277 vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 277 VMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred EEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEE
Confidence 9999999999999999999999999999999999999999999876653
No 42
>PTZ00424 helicase 45; Provisional
Probab=99.90 E-value=2.1e-21 Score=233.97 Aligned_cols=318 Identities=21% Similarity=0.255 Sum_probs=209.3
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhH-HHHHHHHHHHcCC--
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTL-SNWAKEFRKWLPT-- 251 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L-~nW~~Ef~kw~p~-- 251 (1352)
..+.|+|.+++..++ .+.++|+..++|+|||+.++..+............+|||+|...| .|+...+...+..
T Consensus 49 ~~~~~~Q~~ai~~i~----~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 124 (401)
T PTZ00424 49 EKPSAIQQRGIKPIL----DGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLK 124 (401)
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcC
Confidence 369999999999887 688999999999999987653332222222223468999998655 7777777776543
Q ss_pred CeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHh--hhhccCcceEecchhcccCCc--chHHHHH
Q 000684 252 MNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKA--VLSKIKWNYLMVDEAHRLKNS--EAQLYTT 327 (1352)
Q Consensus 252 l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~--~L~~i~w~~lIVDEAHrlKN~--~Skl~~a 327 (1352)
..+....|....+...... ....+|+|+|++.+..... .+..-.+++|||||||++... ...+...
T Consensus 125 ~~~~~~~g~~~~~~~~~~~----------~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i 194 (401)
T PTZ00424 125 VRCHACVGGTVVRDDINKL----------KAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDV 194 (401)
T ss_pred ceEEEEECCcCHHHHHHHH----------cCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHH
Confidence 4555556665444332221 1236899999998764321 222336789999999998543 3455666
Q ss_pred HHccccc-CeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhHhhhcc
Q 000684 328 LSEFSTK-NKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIKDVEKS 406 (1352)
Q Consensus 328 L~~l~~~-~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~dv~~~ 406 (1352)
+..+... ..+++|||+- +.+.++. ..|.. .|..+. .+.+ ...
T Consensus 195 ~~~~~~~~~~i~~SAT~~-~~~~~~~------------------~~~~~----------------~~~~~~-~~~~-~~~ 237 (401)
T PTZ00424 195 FKKLPPDVQVALFSATMP-NEILELT------------------TKFMR----------------DPKRIL-VKKD-ELT 237 (401)
T ss_pred HhhCCCCcEEEEEEecCC-HHHHHHH------------------HHHcC----------------CCEEEE-eCCC-Ccc
Confidence 6666544 4588899963 2111110 01100 000000 0000 000
Q ss_pred CCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCchhhHH
Q 000684 407 LPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDTSKLE 486 (1352)
Q Consensus 407 LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~~~l~ 486 (1352)
+.......+.+. .
T Consensus 238 ~~~~~~~~~~~~--------------------------------------------------------------~----- 250 (401)
T PTZ00424 238 LEGIRQFYVAVE--------------------------------------------------------------K----- 250 (401)
T ss_pred cCCceEEEEecC--------------------------------------------------------------h-----
Confidence 000000000000 0
Q ss_pred HHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEE
Q 000684 487 RIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFL 566 (1352)
Q Consensus 487 ~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfL 566 (1352)
..-++..+..++..+ ...++||||.....++.+...|...++.+..++|+++..+|..+++.|.++ ...+|
T Consensus 251 ----~~~~~~~l~~~~~~~--~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g---~~~vL 321 (401)
T PTZ00424 251 ----EEWKFDTLCDLYETL--TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSG---STRVL 321 (401)
T ss_pred ----HHHHHHHHHHHHHhc--CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcC---CCCEE
Confidence 001222233333322 345799999999999999999999999999999999999999999999974 34589
Q ss_pred eecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCC
Q 000684 567 LSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSK 621 (1352)
Q Consensus 567 LSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~ 621 (1352)
++|.+.++|||++.+++||+||++.++..++|++||++|.|.... ++.|++.+
T Consensus 322 vaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~--~i~l~~~~ 374 (401)
T PTZ00424 322 ITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGV--AINFVTPD 374 (401)
T ss_pred EEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCce--EEEEEcHH
Confidence 999999999999999999999999999999999999999997654 46677765
No 43
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.88 E-value=4.4e-21 Score=244.15 Aligned_cols=311 Identities=20% Similarity=0.179 Sum_probs=206.2
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChh-hHHHHHHHHHHHcCCCe
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLS-TLSNWAKEFRKWLPTMN 253 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s-~L~nW~~Ef~kw~p~l~ 253 (1352)
..+||+|.++++.++ .|.++|+...||.|||+....-+ |.. .|.+|||+|+. ++..+...+.. .++.
T Consensus 459 ~sFRp~Q~eaI~aiL----~GrDVLVimPTGSGKSLcYQLPA--L~~----~GiTLVISPLiSLmqDQV~~L~~--~GI~ 526 (1195)
T PLN03137 459 HSFRPNQREIINATM----SGYDVFVLMPTGGGKSLTYQLPA--LIC----PGITLVISPLVSLIQDQIMNLLQ--ANIP 526 (1195)
T ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCccHHHHHHHHH--HHc----CCcEEEEeCHHHHHHHHHHHHHh--CCCe
Confidence 589999999999887 78999999999999998743221 221 36799999985 44444444443 2567
Q ss_pred EEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhH---hhhhc----cCcceEecchhcccCCcch---H
Q 000684 254 VIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDK---AVLSK----IKWNYLMVDEAHRLKNSEA---Q 323 (1352)
Q Consensus 254 vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~---~~L~~----i~w~~lIVDEAHrlKN~~S---k 323 (1352)
+..+.|+.........+.-.. .....+++|++|++.+.... ..+.. ....+|||||||.+-.... .
T Consensus 527 Aa~L~s~~s~~eq~~ilr~l~----s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRp 602 (1195)
T PLN03137 527 AASLSAGMEWAEQLEILQELS----SEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRP 602 (1195)
T ss_pred EEEEECCCCHHHHHHHHHHHH----hcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHH
Confidence 776777654433222111110 01246899999999886432 12221 2368899999999854321 1
Q ss_pred HHH----HHHcccccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhh
Q 000684 324 LYT----TLSEFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRI 399 (1352)
Q Consensus 324 l~~----aL~~l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~ 399 (1352)
-|. ....+.....++||||.-.....++...|....+..|.. .|.
T Consensus 603 dYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~------Sf~------------------------- 651 (1195)
T PLN03137 603 DYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQ------SFN------------------------- 651 (1195)
T ss_pred HHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec------ccC-------------------------
Confidence 122 223345566799999986555555544443222111100 000
Q ss_pred hHhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCC
Q 000684 400 IKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSI 479 (1352)
Q Consensus 400 k~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~ 479 (1352)
-|.. .+.| ++ . .
T Consensus 652 -------RpNL-~y~V-v~-k--~-------------------------------------------------------- 663 (1195)
T PLN03137 652 -------RPNL-WYSV-VP-K--T-------------------------------------------------------- 663 (1195)
T ss_pred -------ccce-EEEE-ec-c--c--------------------------------------------------------
Confidence 0000 0000 00 0 0
Q ss_pred CchhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCC
Q 000684 480 NDTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPG 559 (1352)
Q Consensus 480 ~~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~ 559 (1352)
...+..|.+++... ..+...||||......+.|..+|...|+.+..+||+++.++|..++++|..+
T Consensus 664 ------------kk~le~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~G- 729 (1195)
T PLN03137 664 ------------KKCLEDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKD- 729 (1195)
T ss_pred ------------hhHHHHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcC-
Confidence 00011122222211 1244689999999999999999999999999999999999999999999984
Q ss_pred CCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEE
Q 000684 560 SEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYR 616 (1352)
Q Consensus 560 s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~Vyr 616 (1352)
...+|++|.|.|+|||++.++.||+||.+-++..|.|++|||+|.|+...+.+|.
T Consensus 730 --ei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 730 --EINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred --CCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 3458999999999999999999999999999999999999999999986665543
No 44
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1.4e-20 Score=232.56 Aligned_cols=331 Identities=25% Similarity=0.359 Sum_probs=232.9
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHH-HHHHHHHHHHhcCCCC-cEEEEEChhhH-HHHHHHHHHHcC-
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQ-SVSMLGFLQNAQQIPG-PFLVVVPLSTL-SNWAKEFRKWLP- 250 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlq-aIa~l~~L~~~~~~~g-p~LIVvP~s~L-~nW~~Ef~kw~p- 250 (1352)
..+.|.|..++--++ .|.++|..+.+|+|||+. .|.+|..+........ +.||++|+..| .|-.+++..+..
T Consensus 50 ~~pt~IQ~~~IP~~l----~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~ 125 (513)
T COG0513 50 EEPTPIQLAAIPLIL----AGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKN 125 (513)
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhh
Confidence 478899999998887 679999999999999987 5566666553212222 28999999776 778888887764
Q ss_pred --CCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhH--hhhhccCcceEecchhcccCCc--chHH
Q 000684 251 --TMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDK--AVLSKIKWNYLMVDEAHRLKNS--EAQL 324 (1352)
Q Consensus 251 --~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~--~~L~~i~w~~lIVDEAHrlKN~--~Skl 324 (1352)
.+++++++|...-........ . ..+|||.|+..++... ..|......++|+|||.+|.+. ...+
T Consensus 126 ~~~~~~~~i~GG~~~~~q~~~l~---------~-~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i 195 (513)
T COG0513 126 LGGLRVAVVYGGVSIRKQIEALK---------R-GVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDI 195 (513)
T ss_pred cCCccEEEEECCCCHHHHHHHHh---------c-CCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHH
Confidence 577788888776665554432 1 4899999999988532 2445557789999999999765 3456
Q ss_pred HHHHHcccc-cCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhHhh
Q 000684 325 YTTLSEFST-KNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIKDV 403 (1352)
Q Consensus 325 ~~aL~~l~~-~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~dv 403 (1352)
...+..+.. ...++.|||--. .+.+| . ..|.. .|
T Consensus 196 ~~I~~~~p~~~qtllfSAT~~~-~i~~l---~---------------~~~l~----------------~p---------- 230 (513)
T COG0513 196 EKILKALPPDRQTLLFSATMPD-DIREL---A---------------RRYLN----------------DP---------- 230 (513)
T ss_pred HHHHHhCCcccEEEEEecCCCH-HHHHH---H---------------HHHcc----------------CC----------
Confidence 666666665 344777888521 11111 0 00000 00
Q ss_pred hccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCchh
Q 000684 404 EKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDTS 483 (1352)
Q Consensus 404 ~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~~ 483 (1352)
. .+.+..... . .. .. ...|-|+.
T Consensus 231 -----~----~i~v~~~~~-------------------~-~~----------~~-~i~q~~~~----------------- 253 (513)
T COG0513 231 -----V----EIEVSVEKL-------------------E-RT----------LK-KIKQFYLE----------------- 253 (513)
T ss_pred -----c----EEEEccccc-------------------c-cc----------cc-CceEEEEE-----------------
Confidence 0 111110000 0 00 00 00000000
Q ss_pred hHHHHhhh-cchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCC
Q 000684 484 KLERIILS-SGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSED 562 (1352)
Q Consensus 484 ~l~~li~~-SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~ 562 (1352)
+.. ..|+.+|..+|...... ++||||.....++.|...|...|+++..|||++++++|.++++.|+++ .
T Consensus 254 -----v~~~~~k~~~L~~ll~~~~~~--~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g---~ 323 (513)
T COG0513 254 -----VESEEEKLELLLKLLKDEDEG--RVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDG---E 323 (513)
T ss_pred -----eCCHHHHHHHHHHHHhcCCCC--eEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcC---C
Confidence 001 14778888888764433 799999999999999999999999999999999999999999999974 3
Q ss_pred cEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCCCHHHHHHHHHHHH
Q 000684 563 FCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKK 634 (1352)
Q Consensus 563 ~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~TiEE~Il~ra~~K 634 (1352)
+-+|++|+++++|||+...++||+||.+.++..|+||+||++|.|.+.. .+.|++. .-|...+...++.
T Consensus 324 ~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~--ai~fv~~-~~e~~~l~~ie~~ 392 (513)
T COG0513 324 LRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGV--AISFVTE-EEEVKKLKRIEKR 392 (513)
T ss_pred CCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCe--EEEEeCc-HHHHHHHHHHHHH
Confidence 4599999999999999999999999999999999999999999996653 4678876 3366666666655
No 45
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=1.7e-21 Score=222.73 Aligned_cols=340 Identities=21% Similarity=0.316 Sum_probs=240.0
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhh-HHHHHHHHHHHcC--
Q 000684 174 GGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLST-LSNWAKEFRKWLP-- 250 (1352)
Q Consensus 174 ~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~-L~nW~~Ef~kw~p-- 250 (1352)
..++||||...++-|.-+- .-++||+.-..|.|||+..+..+..+ .+..||+|-.++ +.||..+|..|..
T Consensus 300 st~iRpYQEksL~KMFGNg-RARSGiIVLPCGAGKtLVGvTAa~ti------kK~clvLcts~VSVeQWkqQfk~wsti~ 372 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKTLVGVTAACTI------KKSCLVLCTSAVSVEQWKQQFKQWSTIQ 372 (776)
T ss_pred ccccCchHHHHHHHHhCCC-cccCceEEEecCCCCceeeeeeeeee------cccEEEEecCccCHHHHHHHHHhhcccC
Confidence 4689999999999886321 12368999999999999877665433 456899999876 6999999999973
Q ss_pred CCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHh----------hHhhhhccCcceEecchhcccCCc
Q 000684 251 TMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLK----------DKAVLSKIKWNYLMVDEAHRLKNS 320 (1352)
Q Consensus 251 ~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~----------d~~~L~~i~w~~lIVDEAHrlKN~ 320 (1352)
+-.+..|..+..++ .+....|+||||.++.. -..+|..-.|.++|+||.|-+ +
T Consensus 373 d~~i~rFTsd~Ke~---------------~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvv--P 435 (776)
T KOG1123|consen 373 DDQICRFTSDAKER---------------FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVV--P 435 (776)
T ss_pred ccceEEeecccccc---------------CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccc--h
Confidence 35666776665443 24467899999999853 245778889999999999998 4
Q ss_pred chHHHHHHHcccccCeEEEeccCCCCCHHHHHHHHhhcC-CCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhh
Q 000684 321 EAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLD-HDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRI 399 (1352)
Q Consensus 321 ~Skl~~aL~~l~~~~rlLLTGTPlqNnl~EL~sLL~fL~-p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~ 399 (1352)
.....+.|....+.++|+||||-+... |=..=||||- |..+. .++. .|.+
T Consensus 436 A~MFRRVlsiv~aHcKLGLTATLvRED--dKI~DLNFLIGPKlYE------AnWm-----------dL~~---------- 486 (776)
T KOG1123|consen 436 AKMFRRVLSIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYE------ANWM-----------DLQK---------- 486 (776)
T ss_pred HHHHHHHHHHHHHHhhccceeEEeecc--ccccccceeecchhhh------ccHH-----------HHHh----------
Confidence 444455556667888999999987642 2223345543 33321 1111 1110
Q ss_pred hHhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCC
Q 000684 400 IKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSI 479 (1352)
Q Consensus 400 k~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~ 479 (1352)
...+.......|+|+||+.- |+..+..+... ..+|
T Consensus 487 ----kGhIA~VqCaEVWCpMt~eF---y~eYL~~~t~k---------r~lL----------------------------- 521 (776)
T KOG1123|consen 487 ----KGHIAKVQCAEVWCPMTPEF---YREYLRENTRK---------RMLL----------------------------- 521 (776)
T ss_pred ----CCceeEEeeeeeecCCCHHH---HHHHHhhhhhh---------hhee-----------------------------
Confidence 00122334557899999864 44333322110 0001
Q ss_pred CchhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCC
Q 000684 480 NDTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPG 559 (1352)
Q Consensus 480 ~~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~ 559 (1352)
.+++..|+.+-.-||.....+|+|+||||..+-.|. .|--..|-+| |.|.+++.+|-++++.|+..
T Consensus 522 --------yvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk---~YAikl~Kpf--IYG~Tsq~ERm~ILqnFq~n- 587 (776)
T KOG1123|consen 522 --------YVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALK---EYAIKLGKPF--IYGPTSQNERMKILQNFQTN- 587 (776)
T ss_pred --------eecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHH---HHHHHcCCce--EECCCchhHHHHHHHhcccC-
Confidence 123456888888888888889999999998866554 5554455554 67999999999999999973
Q ss_pred CCCcEEEeecCCCccCCCCCccCEEEEcCCCC-ChhhHHHHhhhhcccCCC----ceEEEEEEecCCCHHHH
Q 000684 560 SEDFCFLLSTRAGGLGINLATADTVIIFDSDW-NPQNDLQAMSRAHRIGQQ----EVVNIYRFVTSKSVEED 626 (1352)
Q Consensus 560 s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdW-NP~~dlQAigRahRiGQk----k~V~VyrLvt~~TiEE~ 626 (1352)
..+.-+.-+++|...|+|+.|+.+|-..+.. +-....||+||+.|.-.. -++..|.||+++|.|..
T Consensus 588 -~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~ 658 (776)
T KOG1123|consen 588 -PKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMY 658 (776)
T ss_pred -CccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHH
Confidence 3333455579999999999999999999987 456778999999998532 35889999999998754
No 46
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.87 E-value=1.1e-19 Score=230.19 Aligned_cols=306 Identities=17% Similarity=0.243 Sum_probs=199.3
Q ss_pred CCCcHHHHHHHHHHHHHhcCC--CcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhH-HHHHHHHHHHcC-
Q 000684 175 GKLRDYQLEGLNFLVNSWRND--TNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTL-SNWAKEFRKWLP- 250 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~--~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L-~nW~~Ef~kw~p- 250 (1352)
.+|.++|.+++..++...... .+.+|..++|+|||+.++..+...... ...+||++|+..| .|+.++|.++++
T Consensus 234 f~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---g~qvlilaPT~~LA~Q~~~~~~~l~~~ 310 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---GYQVALMAPTEILAEQHYNSLRNLLAP 310 (630)
T ss_pred CCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEECCHHHHHHHHHHHHHHHhcc
Confidence 589999999999998765433 368999999999999875443333322 3468999999776 999999999987
Q ss_pred -CCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCCcchHHHHHHH
Q 000684 251 -TMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLS 329 (1352)
Q Consensus 251 -~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN~~Skl~~aL~ 329 (1352)
++++.+++|+..........+.. .....+|+|+|+..+.... .+ -+.++|||||+|++.-. +....+.
T Consensus 311 ~gi~v~lltg~~~~~~r~~~~~~i------~~g~~~IiVgT~~ll~~~~-~~--~~l~lvVIDEaH~fg~~--qr~~l~~ 379 (630)
T TIGR00643 311 LGIEVALLTGSLKGKRRKELLETI------ASGQIHLVVGTHALIQEKV-EF--KRLALVIIDEQHRFGVE--QRKKLRE 379 (630)
T ss_pred cCcEEEEEecCCCHHHHHHHHHHH------hCCCCCEEEecHHHHhccc-cc--cccceEEEechhhccHH--HHHHHHH
Confidence 48888999886554322222111 2336799999998875432 22 35689999999997322 2222222
Q ss_pred ccc---ccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhHhhhcc
Q 000684 330 EFS---TKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIKDVEKS 406 (1352)
Q Consensus 330 ~l~---~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~dv~~~ 406 (1352)
... ..+.+++||||+...+. +.. |..+. . .+...
T Consensus 380 ~~~~~~~~~~l~~SATp~prtl~----l~~----------------~~~l~---------------~--------~~i~~ 416 (630)
T TIGR00643 380 KGQGGFTPHVLVMSATPIPRTLA----LTV----------------YGDLD---------------T--------SIIDE 416 (630)
T ss_pred hcccCCCCCEEEEeCCCCcHHHH----HHh----------------cCCcc---------------e--------eeecc
Confidence 222 46789999999763321 110 00000 0 00001
Q ss_pred CCCcEE--EEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCchhh
Q 000684 407 LPPKIE--RILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDTSK 484 (1352)
Q Consensus 407 LPpk~e--~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~~~ 484 (1352)
+|+... ....+.-..
T Consensus 417 ~p~~r~~i~~~~~~~~~--------------------------------------------------------------- 433 (630)
T TIGR00643 417 LPPGRKPITTVLIKHDE--------------------------------------------------------------- 433 (630)
T ss_pred CCCCCCceEEEEeCcch---------------------------------------------------------------
Confidence 221100 000000000
Q ss_pred HHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecch--------hHHHHHHHHHHh--cCCcEEEEeCCCCHHHHHHHHHH
Q 000684 485 LERIILSSGKLVILDKLLVRLHETKHRVLIFSQMV--------RMLDILAEYMSY--KGFQFQRLDGSTKAELRHQAMDH 554 (1352)
Q Consensus 485 l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~--------~~ldiL~d~L~~--~g~~~~rldGs~~~~eR~~~Id~ 554 (1352)
+ ..+...+......|++++|||... ..+..+.+.|.. .++.+..+||.++..+|..++++
T Consensus 434 ---------~-~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~ 503 (630)
T TIGR00643 434 ---------K-DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEE 503 (630)
T ss_pred ---------H-HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHH
Confidence 0 111122222224567788887654 223344444442 47889999999999999999999
Q ss_pred hcCCCCCCcEEEeecCCCccCCCCCccCEEEEcCCCC-ChhhHHHHhhhhcccCCCceEE
Q 000684 555 FNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDW-NPQNDLQAMSRAHRIGQQEVVN 613 (1352)
Q Consensus 555 Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdW-NP~~dlQAigRahRiGQkk~V~ 613 (1352)
|.++. ..+|++|.+.++|||++.+++||++|.+. +...+.|+.||++|-|....|.
T Consensus 504 F~~g~---~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~i 560 (630)
T TIGR00643 504 FREGE---VDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCL 560 (630)
T ss_pred HHcCC---CCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEE
Confidence 99843 45899999999999999999999999884 6778889999999999876653
No 47
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.86 E-value=6.6e-20 Score=237.09 Aligned_cols=310 Identities=17% Similarity=0.230 Sum_probs=206.3
Q ss_pred CCCCcHHHHHHHHHHHHHhcCC--CcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhH-HHHHHHHHHHcC
Q 000684 174 GGKLRDYQLEGLNFLVNSWRND--TNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTL-SNWAKEFRKWLP 250 (1352)
Q Consensus 174 ~~~Lr~yQlegvnwL~~~~~~~--~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L-~nW~~Ef~kw~p 250 (1352)
+.++.|+|..++..+..-...+ .+++++.++|.|||..++..+...... ...+||+||+..| .|....|.++++
T Consensus 449 ~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---g~qvlvLvPT~~LA~Q~~~~f~~~~~ 525 (926)
T TIGR00580 449 PFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---GKQVAVLVPTTLLAQQHFETFKERFA 525 (926)
T ss_pred CCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---CCeEEEEeCcHHHHHHHHHHHHHHhc
Confidence 3578999999999998655443 578999999999999876433222222 2468999999766 888899998876
Q ss_pred C--CeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCCcchHHHHHH
Q 000684 251 T--MNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTL 328 (1352)
Q Consensus 251 ~--l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN~~Skl~~aL 328 (1352)
. +++.+++|.....+.....+-. ...+.+|||+|+..+.++. .| -+..+|||||+|++.. .....+
T Consensus 526 ~~~i~v~~Lsg~~~~~e~~~~~~~l------~~g~~dIVIGTp~ll~~~v-~f--~~L~llVIDEahrfgv---~~~~~L 593 (926)
T TIGR00580 526 NFPVTIELLSRFRSAKEQNEILKEL------ASGKIDILIGTHKLLQKDV-KF--KDLGLLIIDEEQRFGV---KQKEKL 593 (926)
T ss_pred cCCcEEEEEeccccHHHHHHHHHHH------HcCCceEEEchHHHhhCCC-Cc--ccCCEEEeecccccch---hHHHHH
Confidence 5 4566677655433322211111 1235799999997654321 22 2458999999999832 334556
Q ss_pred Hccc-ccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhHhhhccC
Q 000684 329 SEFS-TKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIKDVEKSL 407 (1352)
Q Consensus 329 ~~l~-~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~dv~~~L 407 (1352)
+.+. ....|++||||+...+.. ++....++. ++ ..
T Consensus 594 ~~~~~~~~vL~~SATpiprtl~~--~l~g~~d~s---------------------------------~I---------~~ 629 (926)
T TIGR00580 594 KELRTSVDVLTLSATPIPRTLHM--SMSGIRDLS---------------------------------II---------AT 629 (926)
T ss_pred HhcCCCCCEEEEecCCCHHHHHH--HHhcCCCcE---------------------------------EE---------ec
Confidence 6554 356799999997543221 000000000 00 00
Q ss_pred CCcEEEEE---EecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCchhh
Q 000684 408 PPKIERIL---RVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDTSK 484 (1352)
Q Consensus 408 Ppk~e~iv---~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~~~ 484 (1352)
||.....+ .++.+.
T Consensus 630 ~p~~R~~V~t~v~~~~~--------------------------------------------------------------- 646 (926)
T TIGR00580 630 PPEDRLPVRTFVMEYDP--------------------------------------------------------------- 646 (926)
T ss_pred CCCCccceEEEEEecCH---------------------------------------------------------------
Confidence 11100000 000000
Q ss_pred HHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhc--CCcEEEEeCCCCHHHHHHHHHHhcCCCCCC
Q 000684 485 LERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYK--GFQFQRLDGSTKAELRHQAMDHFNAPGSED 562 (1352)
Q Consensus 485 l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~--g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~ 562 (1352)
..+...++..+ ..|.+|+|||+....++.+.+.|... ++++..+||.++..+|..++.+|..+.
T Consensus 647 ----------~~i~~~i~~el-~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk--- 712 (926)
T TIGR00580 647 ----------ELVREAIRREL-LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGE--- 712 (926)
T ss_pred ----------HHHHHHHHHHH-HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCC---
Confidence 00011112222 34678999999999999999999864 789999999999999999999999844
Q ss_pred cEEEeecCCCccCCCCCccCEEEEcCCC-CChhhHHHHhhhhcccCCCceEEEEEEecCC
Q 000684 563 FCFLLSTRAGGLGINLATADTVIIFDSD-WNPQNDLQAMSRAHRIGQQEVVNIYRFVTSK 621 (1352)
Q Consensus 563 ~vfLLSTrAgg~GINL~~AdtVIi~Dsd-WNP~~dlQAigRahRiGQkk~V~VyrLvt~~ 621 (1352)
..+||||.+.++|||++.+++||+++.+ +....+.|+.||++|-|....| |-|+..+
T Consensus 713 ~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~a--ill~~~~ 770 (926)
T TIGR00580 713 FQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYA--YLLYPHQ 770 (926)
T ss_pred CCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEE--EEEECCc
Confidence 4599999999999999999999999986 4566788999999999876544 6666543
No 48
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.86 E-value=4.2e-20 Score=236.64 Aligned_cols=331 Identities=17% Similarity=0.194 Sum_probs=216.4
Q ss_pred CCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHH-HHHHHHHHHhcCCCCcEEEEEChhhH-HHHHHHHHHHc-CCC
Q 000684 176 KLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQS-VSMLGFLQNAQQIPGPFLVVVPLSTL-SNWAKEFRKWL-PTM 252 (1352)
Q Consensus 176 ~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqa-Ia~l~~L~~~~~~~gp~LIVvP~s~L-~nW~~Ef~kw~-p~l 252 (1352)
+|+++|.+++..++ .|.++|++..||+|||+.. +.+|..+... .....|||+|+.-| .+-..+|..+. .++
T Consensus 36 ~p~~~Q~~ai~~il----~G~nvvv~apTGSGKTla~~LPiL~~l~~~--~~~~aL~l~PtraLa~q~~~~l~~l~~~~i 109 (742)
T TIGR03817 36 RPWQHQARAAELAH----AGRHVVVATGTASGKSLAYQLPVLSALADD--PRATALYLAPTKALAADQLRAVRELTLRGV 109 (742)
T ss_pred cCCHHHHHHHHHHH----CCCCEEEECCCCCcHHHHHHHHHHHHHhhC--CCcEEEEEcChHHHHHHHHHHHHHhccCCe
Confidence 69999999999886 7899999999999999985 4566666542 23468999999766 67777888775 357
Q ss_pred eEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhH--------hhhhccCcceEecchhcccCCc-chH
Q 000684 253 NVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDK--------AVLSKIKWNYLMVDEAHRLKNS-EAQ 323 (1352)
Q Consensus 253 ~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~--------~~L~~i~w~~lIVDEAHrlKN~-~Sk 323 (1352)
++.+|.|+........ . ....+|+|||++++.... .+|. ..++|||||||.+.+. .+.
T Consensus 110 ~v~~~~Gdt~~~~r~~----i-------~~~~~IivtTPd~L~~~~L~~~~~~~~~l~--~l~~vViDEah~~~g~fg~~ 176 (742)
T TIGR03817 110 RPATYDGDTPTEERRW----A-------REHARYVLTNPDMLHRGILPSHARWARFLR--RLRYVVIDECHSYRGVFGSH 176 (742)
T ss_pred EEEEEeCCCCHHHHHH----H-------hcCCCEEEEChHHHHHhhccchhHHHHHHh--cCCEEEEeChhhccCccHHH
Confidence 8888999876433211 0 114689999999885321 1233 4589999999999652 333
Q ss_pred HHHHHHcc---c-----ccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchh
Q 000684 324 LYTTLSEF---S-----TKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHI 395 (1352)
Q Consensus 324 l~~aL~~l---~-----~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~ 395 (1352)
+...+..+ . ....+++|||. +|..++... +... |+.
T Consensus 177 ~~~il~rL~ri~~~~g~~~q~i~~SATi--~n~~~~~~~---l~g~-------------------------------~~~ 220 (742)
T TIGR03817 177 VALVLRRLRRLCARYGASPVFVLASATT--ADPAAAASR---LIGA-------------------------------PVV 220 (742)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEecCC--CCHHHHHHH---HcCC-------------------------------CeE
Confidence 33333332 1 23468889995 223332111 1100 000
Q ss_pred hhhhhHhhhcc-CCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCC
Q 000684 396 LRRIIKDVEKS-LPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYG 474 (1352)
Q Consensus 396 LRR~k~dv~~~-LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~ 474 (1352)
+ +..+ -|.....++.. + |.+...... .
T Consensus 221 ~------i~~~~~~~~~~~~~~~-------------------------------------------~-p~~~~~~~~--~ 248 (742)
T TIGR03817 221 A------VTEDGSPRGARTVALW-------------------------------------------E-PPLTELTGE--N 248 (742)
T ss_pred E------ECCCCCCcCceEEEEe-------------------------------------------c-CCccccccc--c
Confidence 0 0000 01000000000 0 000000000 0
Q ss_pred CCCCCCchhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhc--------CCcEEEEeCCCCHH
Q 000684 475 GDTSINDTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYK--------GFQFQRLDGSTKAE 546 (1352)
Q Consensus 475 ~~~~~~~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~--------g~~~~rldGs~~~~ 546 (1352)
+ .. . .-.....+..+|..++ ..+.++|||++...+.+.|..+|... +..+..++|+++++
T Consensus 249 ~---~~-~----r~~~~~~~~~~l~~l~----~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~ 316 (742)
T TIGR03817 249 G---AP-V----RRSASAEAADLLADLV----AEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPE 316 (742)
T ss_pred c---cc-c----ccchHHHHHHHHHHHH----HCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHH
Confidence 0 00 0 0000112334444444 45789999999999999999988653 56778899999999
Q ss_pred HHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCCCHHHH
Q 000684 547 LRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEED 626 (1352)
Q Consensus 547 eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~TiEE~ 626 (1352)
+|..++++|.+ +...+|++|++.++|||+...|+||+||.+-+...++|++||++|.|+... ++-+++.+..|..
T Consensus 317 eR~~ie~~f~~---G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v~~~~~~d~~ 391 (742)
T TIGR03817 317 DRRELERALRD---GELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLVARDDPLDTY 391 (742)
T ss_pred HHHHHHHHHHc---CCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcE--EEEEeCCChHHHH
Confidence 99999999997 445689999999999999999999999999999999999999999998754 3556666777766
Q ss_pred HHHH
Q 000684 627 ILER 630 (1352)
Q Consensus 627 Il~r 630 (1352)
++..
T Consensus 392 ~~~~ 395 (742)
T TIGR03817 392 LVHH 395 (742)
T ss_pred HHhC
Confidence 5543
No 49
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.86 E-value=5e-20 Score=242.84 Aligned_cols=310 Identities=20% Similarity=0.255 Sum_probs=205.0
Q ss_pred CCCcHHHHHHHHHHHHHhcCC--CcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhH-HHHHHHHHHHcCC
Q 000684 175 GKLRDYQLEGLNFLVNSWRND--TNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTL-SNWAKEFRKWLPT 251 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~--~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L-~nW~~Ef~kw~p~ 251 (1352)
.++.+.|.+++.-++.-+..+ .+++++.+||+|||.+++-.+..... ....+||+||+..| .|....|.+++..
T Consensus 599 ~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~---~g~qvlvLvPT~eLA~Q~~~~f~~~~~~ 675 (1147)
T PRK10689 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE---NHKQVAVLVPTTLLAQQHYDNFRDRFAN 675 (1147)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH---cCCeEEEEeCcHHHHHHHHHHHHHhhcc
Confidence 479999999999887654433 67999999999999987633222222 23569999999776 7888888877654
Q ss_pred --CeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCCcchHHHHHHH
Q 000684 252 --MNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLS 329 (1352)
Q Consensus 252 --l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN~~Skl~~aL~ 329 (1352)
+++.++.|...........+-. .....+|||+|++.+..+ +.--+.++|||||+|++.. .....++
T Consensus 676 ~~v~i~~l~g~~s~~e~~~il~~l------~~g~~dIVVgTp~lL~~~---v~~~~L~lLVIDEahrfG~---~~~e~lk 743 (1147)
T PRK10689 676 WPVRIEMLSRFRSAKEQTQILAEA------AEGKIDILIGTHKLLQSD---VKWKDLGLLIVDEEHRFGV---RHKERIK 743 (1147)
T ss_pred CCceEEEEECCCCHHHHHHHHHHH------HhCCCCEEEECHHHHhCC---CCHhhCCEEEEechhhcch---hHHHHHH
Confidence 5666676655443322211110 123579999999876432 1223578999999999932 2344555
Q ss_pred ccc-ccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhHhhhccCC
Q 000684 330 EFS-TKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIKDVEKSLP 408 (1352)
Q Consensus 330 ~l~-~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~dv~~~LP 408 (1352)
.+. ....|++||||++..+.- ++..+.++. ++ ..|
T Consensus 744 ~l~~~~qvLl~SATpiprtl~l--~~~gl~d~~---------------------------------~I---------~~~ 779 (1147)
T PRK10689 744 AMRADVDILTLTATPIPRTLNM--AMSGMRDLS---------------------------------II---------ATP 779 (1147)
T ss_pred hcCCCCcEEEEcCCCCHHHHHH--HHhhCCCcE---------------------------------EE---------ecC
Confidence 554 346799999997654321 100000000 00 001
Q ss_pred CcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCchhhHHHH
Q 000684 409 PKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDTSKLERI 488 (1352)
Q Consensus 409 pk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~~~l~~l 488 (1352)
+.....+ +..+. . . .
T Consensus 780 p~~r~~v-----------------------------------------~~~~~-----~-----------~-~------- 794 (1147)
T PRK10689 780 PARRLAV-----------------------------------------KTFVR-----E-----------Y-D------- 794 (1147)
T ss_pred CCCCCCc-----------------------------------------eEEEE-----e-----------c-C-------
Confidence 1100000 00000 0 0 0
Q ss_pred hhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhc--CCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEE
Q 000684 489 ILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYK--GFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFL 566 (1352)
Q Consensus 489 i~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~--g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfL 566 (1352)
.......++..+. .+.+|+||++.+..++.+.+.|... ++.+..+||.++..+|..++.+|.++. +-+|
T Consensus 795 -----~~~~k~~il~el~-r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk---~~VL 865 (1147)
T PRK10689 795 -----SLVVREAILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQR---FNVL 865 (1147)
T ss_pred -----cHHHHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcC---CCEE
Confidence 0001122233332 3668999999999999999999876 789999999999999999999999843 4589
Q ss_pred eecCCCccCCCCCccCEEEEcCCC-CChhhHHHHhhhhcccCCCceEEEEEEec
Q 000684 567 LSTRAGGLGINLATADTVIIFDSD-WNPQNDLQAMSRAHRIGQQEVVNIYRFVT 619 (1352)
Q Consensus 567 LSTrAgg~GINL~~AdtVIi~Dsd-WNP~~dlQAigRahRiGQkk~V~VyrLvt 619 (1352)
++|.+.++|||++.+++||+.+++ ++...+.|+.||++|.|++.-+ |-+..
T Consensus 866 VaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a--~ll~~ 917 (1147)
T PRK10689 866 VCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYA--WLLTP 917 (1147)
T ss_pred EECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEE--EEEeC
Confidence 999999999999999999998876 6777899999999999887544 54443
No 50
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.86 E-value=1.4e-19 Score=236.16 Aligned_cols=324 Identities=20% Similarity=0.223 Sum_probs=204.2
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHH-HHHHHHHHhcC-----CCCcEEEEEChhhH-HHHHHH---
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSV-SMLGFLQNAQQ-----IPGPFLVVVPLSTL-SNWAKE--- 244 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaI-a~l~~L~~~~~-----~~gp~LIVvP~s~L-~nW~~E--- 244 (1352)
..|+|+|.+++..+. .|.++|++..||+|||+.++ +++..+..... ....+|+|+|+..| .++.+.
T Consensus 31 ~~~tpiQ~~Ai~~il----~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~ 106 (876)
T PRK13767 31 GTFTPPQRYAIPLIH----EGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEE 106 (876)
T ss_pred CCCCHHHHHHHHHHH----cCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 469999999998775 78899999999999999864 45555543211 12248999998655 555543
Q ss_pred ----HHHHc-------CCCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhh---H---hhhhccCcc
Q 000684 245 ----FRKWL-------PTMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKD---K---AVLSKIKWN 307 (1352)
Q Consensus 245 ----f~kw~-------p~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d---~---~~L~~i~w~ 307 (1352)
+..++ |++.+.+.+|+.......+.. ....+|+|||++.+... . ..|. ..+
T Consensus 107 ~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l----------~~~p~IlVtTPE~L~~ll~~~~~~~~l~--~l~ 174 (876)
T PRK13767 107 PLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKML----------KKPPHILITTPESLAILLNSPKFREKLR--TVK 174 (876)
T ss_pred HHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHH----------hCCCCEEEecHHHHHHHhcChhHHHHHh--cCC
Confidence 33443 467888999987655433221 12569999999987532 1 1222 468
Q ss_pred eEecchhcccCCcc--hHHHHH---HHccc--ccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhccccccc
Q 000684 308 YLMVDEAHRLKNSE--AQLYTT---LSEFS--TKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFN 380 (1352)
Q Consensus 308 ~lIVDEAHrlKN~~--Skl~~a---L~~l~--~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~ 380 (1352)
+|||||+|.+-+.. ..+... |..+. ...+++||||. .++.++.. |+...... ..
T Consensus 175 ~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl--~~~~~va~---~L~~~~~~---------~~----- 235 (876)
T PRK13767 175 WVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATI--EPLEEVAK---FLVGYEDD---------GE----- 235 (876)
T ss_pred EEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEeccc--CCHHHHHH---HhcCcccc---------CC-----
Confidence 89999999997532 222222 22222 34579999996 33444432 22211000 00
Q ss_pred HHHHHHHHHhhcchhhhhhhHhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhc
Q 000684 381 ENELANLHMELRPHILRRIIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCC 460 (1352)
Q Consensus 381 ~~~i~~L~~~L~p~~LRR~k~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~c 460 (1352)
. ++..+ +...........+.++...
T Consensus 236 ~----------r~~~i------v~~~~~k~~~i~v~~p~~~--------------------------------------- 260 (876)
T PRK13767 236 P----------RDCEI------VDARFVKPFDIKVISPVDD--------------------------------------- 260 (876)
T ss_pred C----------CceEE------EccCCCccceEEEeccCcc---------------------------------------
Confidence 0 00000 0000000000000000000
Q ss_pred CCccccccccCCCCCCCCCCchhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhc------CC
Q 000684 461 NHPFLFESADHGYGGDTSINDTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYK------GF 534 (1352)
Q Consensus 461 nHP~L~~~~e~~~~~~~~~~~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~------g~ 534 (1352)
+.. ... . .....+..+|..+...++++||||+.....+.+...|... +.
T Consensus 261 ----l~~-----------~~~----~------~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~ 315 (876)
T PRK13767 261 ----LIH-----------TPA----E------EISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDED 315 (876)
T ss_pred ----ccc-----------ccc----c------hhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhcccc
Confidence 000 000 0 0001122333344455789999999999999999888752 46
Q ss_pred cEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhccc-CCCceEE
Q 000684 535 QFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRI-GQQEVVN 613 (1352)
Q Consensus 535 ~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRi-GQkk~V~ 613 (1352)
.+..+||+++.++|..+++.|.++ ...+|++|.+.++|||+..+|.||+|+++.+...++|++||++|. |......
T Consensus 316 ~i~~hHg~ls~~~R~~ve~~fk~G---~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ 392 (876)
T PRK13767 316 NIGAHHSSLSREVRLEVEEKLKRG---ELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGR 392 (876)
T ss_pred ceeeeeCCCCHHHHHHHHHHHHcC---CCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEE
Confidence 788999999999999999999984 346899999999999999999999999999999999999999986 4445555
Q ss_pred EEE
Q 000684 614 IYR 616 (1352)
Q Consensus 614 Vyr 616 (1352)
|+-
T Consensus 393 ii~ 395 (876)
T PRK13767 393 IIV 395 (876)
T ss_pred EEE
Confidence 554
No 51
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.85 E-value=1.2e-19 Score=231.55 Aligned_cols=310 Identities=16% Similarity=0.206 Sum_probs=202.5
Q ss_pred CCCCcHHHHHHHHHHHHHhcCC--CcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhH-HHHHHHHHHHcC
Q 000684 174 GGKLRDYQLEGLNFLVNSWRND--TNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTL-SNWAKEFRKWLP 250 (1352)
Q Consensus 174 ~~~Lr~yQlegvnwL~~~~~~~--~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L-~nW~~Ef~kw~p 250 (1352)
+.+|+++|..++.-+..-+..+ .+.+|..++|+|||+.++..+...... ...+||+||+..| .|+.+.|.++++
T Consensus 259 ~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---g~q~lilaPT~~LA~Q~~~~l~~l~~ 335 (681)
T PRK10917 259 PFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---GYQAALMAPTEILAEQHYENLKKLLE 335 (681)
T ss_pred CCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEeccHHHHHHHHHHHHHHHh
Confidence 3589999999999988765443 478999999999999876444322221 3468999999766 889999999987
Q ss_pred C--CeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCCcchHHHHHH
Q 000684 251 T--MNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTL 328 (1352)
Q Consensus 251 ~--l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN~~Skl~~aL 328 (1352)
. +++.+++|+...........-. .....+|+|+|+..+.... .+ -+.++|||||+|++. ......+
T Consensus 336 ~~~i~v~ll~G~~~~~~r~~~~~~l------~~g~~~IvVgT~~ll~~~v-~~--~~l~lvVIDE~Hrfg---~~qr~~l 403 (681)
T PRK10917 336 PLGIRVALLTGSLKGKERREILEAI------ASGEADIVIGTHALIQDDV-EF--HNLGLVIIDEQHRFG---VEQRLAL 403 (681)
T ss_pred hcCcEEEEEcCCCCHHHHHHHHHHH------hCCCCCEEEchHHHhcccc-hh--cccceEEEechhhhh---HHHHHHH
Confidence 5 7888899987643322222111 2236899999998775321 22 256889999999983 2233344
Q ss_pred Hcc-cccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhHhhhccC
Q 000684 329 SEF-STKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIKDVEKSL 407 (1352)
Q Consensus 329 ~~l-~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~dv~~~L 407 (1352)
... ...+.+++||||+...+. +.. |..+. ... ...+
T Consensus 404 ~~~~~~~~iL~~SATp~prtl~----~~~----------------~g~~~---------------~s~--------i~~~ 440 (681)
T PRK10917 404 REKGENPHVLVMTATPIPRTLA----MTA----------------YGDLD---------------VSV--------IDEL 440 (681)
T ss_pred HhcCCCCCEEEEeCCCCHHHHH----HHH----------------cCCCc---------------eEE--------EecC
Confidence 433 346789999999643211 110 00000 000 0011
Q ss_pred CCcEE--EEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCchhhH
Q 000684 408 PPKIE--RILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDTSKL 485 (1352)
Q Consensus 408 Ppk~e--~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~~~l 485 (1352)
|+... ....+.
T Consensus 441 p~~r~~i~~~~~~------------------------------------------------------------------- 453 (681)
T PRK10917 441 PPGRKPITTVVIP------------------------------------------------------------------- 453 (681)
T ss_pred CCCCCCcEEEEeC-------------------------------------------------------------------
Confidence 11000 000000
Q ss_pred HHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchh--------HHHHHHHHHHhc--CCcEEEEeCCCCHHHHHHHHHHh
Q 000684 486 ERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVR--------MLDILAEYMSYK--GFQFQRLDGSTKAELRHQAMDHF 555 (1352)
Q Consensus 486 ~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~--------~ldiL~d~L~~~--g~~~~rldGs~~~~eR~~~Id~F 555 (1352)
..+...+.+.+....+.|++++|||..+. .+..+.+.|... ++.+..+||.++..+|..++++|
T Consensus 454 ------~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F 527 (681)
T PRK10917 454 ------DSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAF 527 (681)
T ss_pred ------cccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 00001111222223357889999987432 233445555443 57899999999999999999999
Q ss_pred cCCCCCCcEEEeecCCCccCCCCCccCEEEEcCCCC-ChhhHHHHhhhhcccCCCceEEEEEEec
Q 000684 556 NAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDW-NPQNDLQAMSRAHRIGQQEVVNIYRFVT 619 (1352)
Q Consensus 556 n~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdW-NP~~dlQAigRahRiGQkk~V~VyrLvt 619 (1352)
.++ ...+|++|.+.++|||++.+++||++|++. ....+.|+.||++|-|....| |.++.
T Consensus 528 ~~g---~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~--ill~~ 587 (681)
T PRK10917 528 KAG---EIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYC--VLLYK 587 (681)
T ss_pred HcC---CCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEE--EEEEC
Confidence 974 345899999999999999999999999985 567788999999999976555 44443
No 52
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.84 E-value=1.2e-20 Score=218.00 Aligned_cols=343 Identities=19% Similarity=0.289 Sum_probs=227.9
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHH-HHHHHHHHHHhc-------CCCCc-EEEEEChhhH-HHHHHH
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQ-SVSMLGFLQNAQ-------QIPGP-FLVVVPLSTL-SNWAKE 244 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlq-aIa~l~~L~~~~-------~~~gp-~LIVvP~s~L-~nW~~E 244 (1352)
....|.|..++--++ ++.+.|+..|+|+|||.. .|-++.++.... ...|| .+|++|+.-| .|-+.|
T Consensus 266 ~eptpIqR~aipl~l----Q~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeE 341 (673)
T KOG0333|consen 266 KEPTPIQRQAIPLGL----QNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEE 341 (673)
T ss_pred CCCchHHHhhccchh----ccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHH
Confidence 367788998887555 788999999999999965 344555554322 33465 5899999776 777788
Q ss_pred HHHHcC--CCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhh--HhhhhccCcceEecchhcccCCc
Q 000684 245 FRKWLP--TMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKD--KAVLSKIKWNYLMVDEAHRLKNS 320 (1352)
Q Consensus 245 f~kw~p--~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d--~~~L~~i~w~~lIVDEAHrlKN~ 320 (1352)
-.+++- ++.++.+.|...-.+.--+ ....++++|.|+..+... ...|-.-...+||+|||.++-..
T Consensus 342 t~kf~~~lg~r~vsvigg~s~EEq~fq----------ls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDm 411 (673)
T KOG0333|consen 342 TNKFGKPLGIRTVSVIGGLSFEEQGFQ----------LSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDM 411 (673)
T ss_pred HHHhcccccceEEEEecccchhhhhhh----------hhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcc
Confidence 888753 3677877887654432111 234789999999988764 33455557799999999998543
Q ss_pred --chHHHHHHHcccccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhh
Q 000684 321 --EAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRR 398 (1352)
Q Consensus 321 --~Skl~~aL~~l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR 398 (1352)
.-...+.|..+ |..|- .| +.+++. ....+ +
T Consensus 412 gfE~dv~~iL~~m-----------Pssn~-----------k~----~tde~~------------~~~~~---~------- 443 (673)
T KOG0333|consen 412 GFEPDVQKILEQM-----------PSSNA-----------KP----DTDEKE------------GEERV---R------- 443 (673)
T ss_pred cccHHHHHHHHhC-----------Ccccc-----------CC----Cccchh------------hHHHH---H-------
Confidence 22333333222 21110 00 000000 00000 0
Q ss_pred hhHhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCC
Q 000684 399 IIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTS 478 (1352)
Q Consensus 399 ~k~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~ 478 (1352)
+....+---.......+.|++.-..+-+..+. .|..+.....+.+
T Consensus 444 --~~~~~~k~yrqT~mftatm~p~verlar~ylr-----------------------------~pv~vtig~~gk~---- 488 (673)
T KOG0333|consen 444 --KNFSSSKKYRQTVMFTATMPPAVERLARSYLR-----------------------------RPVVVTIGSAGKP---- 488 (673)
T ss_pred --hhcccccceeEEEEEecCCChHHHHHHHHHhh-----------------------------CCeEEEeccCCCC----
Confidence 00000000012233456666655444333332 2222211111100
Q ss_pred CCchhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCC
Q 000684 479 INDTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAP 558 (1352)
Q Consensus 479 ~~~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~ 558 (1352)
....+....++..+.|...|.++|... -...+|||.+....+|.|++.|...||++++|||+.++++|..++..|.+.
T Consensus 489 ~~rveQ~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~ 566 (673)
T KOG0333|consen 489 TPRVEQKVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREG 566 (673)
T ss_pred ccchheEEEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhc
Confidence 011111122345677888888888776 356899999999999999999999999999999999999999999999986
Q ss_pred CCCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCC
Q 000684 559 GSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSK 621 (1352)
Q Consensus 559 ~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~ 621 (1352)
..+ +|++|+++|+|||++++++||.||..-+-..|.++|||.+|.|+...+ ..|+|..
T Consensus 567 t~d---IlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~Gta--iSflt~~ 624 (673)
T KOG0333|consen 567 TGD---ILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTA--ISFLTPA 624 (673)
T ss_pred CCC---EEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCcee--EEEeccc
Confidence 665 899999999999999999999999999999999999999999998766 4566654
No 53
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.84 E-value=5.3e-19 Score=232.40 Aligned_cols=359 Identities=15% Similarity=0.170 Sum_probs=207.6
Q ss_pred CCCCcHHHHHHHHHHHHHhcCC-CcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChh-hHHHHHHHHHHHcCC
Q 000684 174 GGKLRDYQLEGLNFLVNSWRND-TNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLS-TLSNWAKEFRKWLPT 251 (1352)
Q Consensus 174 ~~~Lr~yQlegvnwL~~~~~~~-~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s-~L~nW~~Ef~kw~p~ 251 (1352)
+..||+||.++++.+...+.++ .+++|.+.+|+|||+++++++..+..... .+.+|||||.. ++.||..+|..+.+.
T Consensus 411 ~~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~-~~rVLfLvDR~~L~~Qa~~~F~~~~~~ 489 (1123)
T PRK11448 411 GLGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKR-FRRILFLVDRSALGEQAEDAFKDTKIE 489 (1123)
T ss_pred CCCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCc-cCeEEEEecHHHHHHHHHHHHHhcccc
Confidence 3579999999999887766543 57899999999999999998887766533 45799999975 569999999987432
Q ss_pred Ce-EE-EEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHh-------hhhccCcceEecchhcccCCc--
Q 000684 252 MN-VI-VYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKA-------VLSKIKWNYLMVDEAHRLKNS-- 320 (1352)
Q Consensus 252 l~-vv-vy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~-------~L~~i~w~~lIVDEAHrlKN~-- 320 (1352)
.. .+ ...+... +.. ........|+|+|++++.+... .+..-.|++||||||||....
T Consensus 490 ~~~~~~~i~~i~~----L~~--------~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~ 557 (1123)
T PRK11448 490 GDQTFASIYDIKG----LED--------KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDK 557 (1123)
T ss_pred cccchhhhhchhh----hhh--------hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCcccc
Confidence 11 11 0111000 000 0012356899999999865421 122346899999999996321
Q ss_pred ---------------chHHHHHHHcccccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHH
Q 000684 321 ---------------EAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELA 385 (1352)
Q Consensus 321 ---------------~Skl~~aL~~l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~ 385 (1352)
.+...+.|..|. ..+++|||||..++ .++|. ...+ .|. -.+.+.
T Consensus 558 ~~~~~~~~~~~~~~~~~~yr~iL~yFd-A~~IGLTATP~r~t-~~~FG------~pv~--------~Ys-----l~eAI~ 616 (1123)
T PRK11448 558 EMSEGELQFRDQLDYVSKYRRVLDYFD-AVKIGLTATPALHT-TEIFG------EPVY--------TYS-----YREAVI 616 (1123)
T ss_pred ccccchhccchhhhHHHHHHHHHhhcC-ccEEEEecCCccch-hHHhC------CeeE--------Eee-----HHHHHh
Confidence 122333344344 58899999997432 11111 0000 000 000000
Q ss_pred HHHHhhcchhhhhhhHhhhccCCCcEEEEEE----ecCC-HHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhc
Q 000684 386 NLHMELRPHILRRIIKDVEKSLPPKIERILR----VEMS-PLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCC 460 (1352)
Q Consensus 386 ~L~~~L~p~~LRR~k~dv~~~LPpk~e~iv~----v~Ls-~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~c 460 (1352)
..+++. ..||....... +... ..+...|...... +....-.. .+.
T Consensus 617 ------DG~Lv~--------~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~----i~~~~l~d--~~~---------- 666 (1123)
T PRK11448 617 ------DGYLID--------HEPPIRIETRLSQEGIHFEKGEEVEVINTQTGE----IDLATLED--EVD---------- 666 (1123)
T ss_pred ------cCCccc--------CcCCEEEEEEeccccccccccchhhhcchhhhh----hhhccCcH--HHh----------
Confidence 001100 01222211100 0000 0011111110000 00000000 000
Q ss_pred CCccccccccCCCCCCCCCCchhhHHHHhhhcchhH-HHHHHHHHhhh-cCCeEEEEecchhHHHHHHHHHHhc------
Q 000684 461 NHPFLFESADHGYGGDTSINDTSKLERIILSSGKLV-ILDKLLVRLHE-TKHRVLIFSQMVRMLDILAEYMSYK------ 532 (1352)
Q Consensus 461 nHP~L~~~~e~~~~~~~~~~~~~~l~~li~~SgKl~-~L~kLL~~l~~-~g~KVLIFSq~~~~ldiL~d~L~~~------ 532 (1352)
.....+...+....... ++..++..+.. .+.|+||||.....++.+.+.|...
T Consensus 667 -------------------~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~ 727 (1123)
T PRK11448 667 -------------------FEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYG 727 (1123)
T ss_pred -------------------hhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcC
Confidence 00000111111111111 22333333322 2369999999999888887776542
Q ss_pred CC---cEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCC-
Q 000684 533 GF---QFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQ- 608 (1352)
Q Consensus 533 g~---~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQ- 608 (1352)
++ .+..++|+++ ++..+|++|.++. ...+|++++..++|+|++.+++||++++.-++..+.|++||+.|.--
T Consensus 728 ~~~~~~v~~itg~~~--~~~~li~~Fk~~~--~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~ 803 (1123)
T PRK11448 728 QVEDDAVIKITGSID--KPDQLIRRFKNER--LPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCPE 803 (1123)
T ss_pred CcCccceEEEeCCcc--chHHHHHHHhCCC--CCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCcc
Confidence 22 4567999986 4778999998732 23689999999999999999999999999999999999999999854
Q ss_pred --CceEEEEEEec
Q 000684 609 --QEVVNIYRFVT 619 (1352)
Q Consensus 609 --kk~V~VyrLvt 619 (1352)
|..+.||.++-
T Consensus 804 ~~K~~f~I~D~vg 816 (1123)
T PRK11448 804 IGKTHFRIFDAVD 816 (1123)
T ss_pred CCCceEEEEehHH
Confidence 67788888753
No 54
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=1.1e-19 Score=209.23 Aligned_cols=372 Identities=19% Similarity=0.266 Sum_probs=229.1
Q ss_pred CCcHHHHHHHHHHHHHhc-----CCCcEEEEcCCCCcHHHH-HHHHHHHHHHhcCCCCcEEEEEChhhH-HHHHHHHHHH
Q 000684 176 KLRDYQLEGLNFLVNSWR-----NDTNVILADEMGLGKTVQ-SVSMLGFLQNAQQIPGPFLVVVPLSTL-SNWAKEFRKW 248 (1352)
Q Consensus 176 ~Lr~yQlegvnwL~~~~~-----~~~~~ILADEmGLGKTlq-aIa~l~~L~~~~~~~gp~LIVvP~s~L-~nW~~Ef~kw 248 (1352)
.++|-|...+-|++.-.. ..+.+.++..+|+|||+. +|.++..|....-.+-..|||+|...| .|-.++|.+|
T Consensus 159 ~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~ 238 (620)
T KOG0350|consen 159 RLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRL 238 (620)
T ss_pred cccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHh
Confidence 689999999999976554 356788999999999998 677777776543334568999999776 8899999999
Q ss_pred cCC--CeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhhcc---CcceEecchhcccCCc--c
Q 000684 249 LPT--MNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKI---KWNYLMVDEAHRLKNS--E 321 (1352)
Q Consensus 249 ~p~--l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~i---~w~~lIVDEAHrlKN~--~ 321 (1352)
++. +.|+...|...-+...++.. . .....+.||+|+|+..+......-..| +-.|+|||||+||.+. .
T Consensus 239 ~~~tgL~V~~~sgq~sl~~E~~qL~--~---~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ 313 (620)
T KOG0350|consen 239 NSGTGLAVCSLSGQNSLEDEARQLA--S---DPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQ 313 (620)
T ss_pred ccCCceEEEecccccchHHHHHHHh--c---CCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHH
Confidence 975 56666677666555554432 1 112236899999999998765533333 5689999999999653 2
Q ss_pred hHHHHHHHcccccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhH
Q 000684 322 AQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIK 401 (1352)
Q Consensus 322 Skl~~aL~~l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~ 401 (1352)
..+...+..+....++.+++ .++.+..-..|-. ...+...+
T Consensus 314 ~Wl~~v~~~~~~~k~~~~~~--------nii~~~~~~~pt~---------------------~~e~~t~~---------- 354 (620)
T KOG0350|consen 314 EWLDTVMSLCKTMKRVACLD--------NIIRQRQAPQPTV---------------------LSELLTKL---------- 354 (620)
T ss_pred HHHHHHHHHhCCchhhcChh--------hhhhhcccCCchh---------------------hHHHHhhc----------
Confidence 23333333333332222221 1111000000000 00000000
Q ss_pred hhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCc
Q 000684 402 DVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSIND 481 (1352)
Q Consensus 402 dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~ 481 (1352)
...-.+.++-.+-+.+.+.-.. +.+| -.+||-|+-...... +......
T Consensus 355 --------------~~~~~~l~kL~~satLsqdP~K---------------l~~l--~l~~Prl~~v~~~~~-~ryslp~ 402 (620)
T KOG0350|consen 355 --------------GKLYPPLWKLVFSATLSQDPSK---------------LKDL--TLHIPRLFHVSKPLI-GRYSLPS 402 (620)
T ss_pred --------------CCcCchhHhhhcchhhhcChHH---------------Hhhh--hcCCCceEEeecccc-eeeecCh
Confidence 0000111111111111111111 1111 134555543322100 0000000
Q ss_pred hhhHHHHhhhcc--hhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHH----hcCCcEEEEeCCCCHHHHHHHHHHh
Q 000684 482 TSKLERIILSSG--KLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMS----YKGFQFQRLDGSTKAELRHQAMDHF 555 (1352)
Q Consensus 482 ~~~l~~li~~Sg--Kl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~----~~g~~~~rldGs~~~~eR~~~Id~F 555 (1352)
..-...+..+. |-..+-.+|.. ....++|+|+........|...|. .-++++-.+.|..+...|.+.+.+|
T Consensus 403 -~l~~~~vv~~~~~kpl~~~~lI~~--~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f 479 (620)
T KOG0350|consen 403 -SLSHRLVVTEPKFKPLAVYALITS--NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKF 479 (620)
T ss_pred -hhhhceeecccccchHhHHHHHHH--hhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHH
Confidence 00111222222 33445566655 357799999999988777777765 3466667799999999999999999
Q ss_pred cCCCCCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCCCHHHHHHHHHHH
Q 000684 556 NAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKK 633 (1352)
Q Consensus 556 n~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~TiEE~Il~ra~~ 633 (1352)
+.+ +..+||++++..+|||+...+.||.||++-.-..|++|.||..|.||..-+ |.|+... |++.+-..-+
T Consensus 480 ~~g---~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a--~tll~~~--~~r~F~klL~ 550 (620)
T KOG0350|consen 480 AKG---DINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYA--ITLLDKH--EKRLFSKLLK 550 (620)
T ss_pred hcC---CceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceE--EEeeccc--cchHHHHHHH
Confidence 984 345999999999999999999999999999999999999999999997654 7777765 3444443333
No 55
>PF13907 DUF4208: Domain of unknown function (DUF4208)
Probab=99.84 E-value=4.5e-21 Score=185.12 Aligned_cols=96 Identities=28% Similarity=0.593 Sum_probs=86.0
Q ss_pred CChhHHhhhhhhhhHHHHHHHhHHHHHHHHHHHhhhhcCCCCChhhhcccCCCccccccchhhhhhcchhhhhchHHHHH
Q 000684 1080 DNEEVYEQFKEVKWMEWCEDVMADEIRTLQRLQRLQATSDNLPKEKVASVFPSFCWHIPLYSRIKHLTSLLFFHFIQVLS 1159 (1352)
Q Consensus 1080 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1159 (1352)
.++++|++|++ .+|+.+|+|++++|++|+.+. ++|+++++ |+
T Consensus 5 ~~~~~~ds~~~----~~ck~~m~Pvkk~LkkL~~~~---~~l~~~e~-------------------------------a~ 46 (100)
T PF13907_consen 5 SDEKEYDSMDE----DECKELMRPVKKSLKKLKKPK---KGLPRKER-------------------------------AK 46 (100)
T ss_pred hhhhccCccHH----HHHHHHhHHHHHHHHHhccCC---CCCCHHHH-------------------------------HH
Confidence 35667888865 499999999999999988864 59999999 99
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhhhhhHHHHhhhHHhhhhccccCChHHHHHHHHHH
Q 000684 1160 KIRNYLQLIGRRIDQIVLEHEEELYKQDRMTMRLWNYVSTFSNLSGEKLHQIYSKL 1215 (1352)
Q Consensus 1160 ~~~~~L~~iG~~i~~~~~~~~~~~~~~~~~~~~lW~~~s~f~~~~~~~l~~my~~~ 1215 (1352)
+||+||+.||+||+.+++++. .. +.++|++|||.|||.|||++|++|++||++|
T Consensus 47 ~lk~~L~~IG~~I~~~l~~~~-~~-~~~~l~~~LW~fvs~fwp~~~~kL~~mY~ki 100 (100)
T PF13907_consen 47 ILKKELLKIGDFIDSILKEYK-DD-EPEKLRKHLWSFVSKFWPNKGKKLHKMYKKI 100 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-cc-hHHHHHHHHHHHHHHcCCCCHHHHHHHHHcC
Confidence 999999999999999999875 33 7899999999999999999999999999986
No 56
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=7.9e-19 Score=201.34 Aligned_cols=317 Identities=23% Similarity=0.330 Sum_probs=219.3
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHH-HHHHHHHHhcCCC--C--cEEEEEChhhH----HHHHHHH
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSV-SMLGFLQNAQQIP--G--PFLVVVPLSTL----SNWAKEF 245 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaI-a~l~~L~~~~~~~--g--p~LIVvP~s~L----~nW~~Ef 245 (1352)
.++.|-|..++-.++ ++..+.+-..+|+|||+..+ .++..+.+..... + -.|||+|+.-| .+-...|
T Consensus 27 ~~mTpVQa~tIPlll----~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F 102 (567)
T KOG0345|consen 27 EKMTPVQAATIPLLL----KNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPF 102 (567)
T ss_pred cccCHHHHhhhHHHh----cCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHH
Confidence 478999999998887 78899999999999999854 4555553322222 2 25999998766 3344456
Q ss_pred HHHcCCCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHh----hHhhhhccCcceEecchhcccCC--
Q 000684 246 RKWLPTMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLK----DKAVLSKIKWNYLMVDEAHRLKN-- 319 (1352)
Q Consensus 246 ~kw~p~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~----d~~~L~~i~w~~lIVDEAHrlKN-- 319 (1352)
...+|++++.++.|+..-.+-+..+. ....+|+|.|+..+.. ....+..-...+||+|||+||..
T Consensus 103 ~~~l~~l~~~l~vGG~~v~~Di~~fk---------ee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmg 173 (567)
T KOG0345|consen 103 LEHLPNLNCELLVGGRSVEEDIKTFK---------EEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMG 173 (567)
T ss_pred HHhhhccceEEEecCccHHHHHHHHH---------HhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhccc
Confidence 66679999999999976665544332 2357899999987754 33445544678999999999965
Q ss_pred cchHHHHHHHcccccCeEEE-eccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhh
Q 000684 320 SEAQLYTTLSEFSTKNKLLI-TGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRR 398 (1352)
Q Consensus 320 ~~Skl~~aL~~l~~~~rlLL-TGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR 398 (1352)
....+..+|..+..++|-+| |||-.+ .+..|. ..-||.
T Consensus 174 Fe~~~n~ILs~LPKQRRTGLFSATq~~-------------------------------------~v~dL~----raGLRN 212 (567)
T KOG0345|consen 174 FEASVNTILSFLPKQRRTGLFSATQTQ-------------------------------------EVEDLA----RAGLRN 212 (567)
T ss_pred HHHHHHHHHHhcccccccccccchhhH-------------------------------------HHHHHH----HhhccC
Confidence 45567777888887777654 666321 111110 001110
Q ss_pred hhHhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCC
Q 000684 399 IIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTS 478 (1352)
Q Consensus 399 ~k~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~ 478 (1352)
.....|.. .+.....+++-+- |+
T Consensus 213 -----------pv~V~V~~----------------------k~~~~tPS~L~~~-----------Y~------------- 235 (567)
T KOG0345|consen 213 -----------PVRVSVKE----------------------KSKSATPSSLALE-----------YL------------- 235 (567)
T ss_pred -----------ceeeeecc----------------------cccccCchhhcce-----------ee-------------
Confidence 00000000 0000000000000 00
Q ss_pred CCchhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHh--cCCcEEEEeCCCCHHHHHHHHHHhc
Q 000684 479 INDTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSY--KGFQFQRLDGSTKAELRHQAMDHFN 556 (1352)
Q Consensus 479 ~~~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~--~g~~~~rldGs~~~~eR~~~Id~Fn 556 (1352)
.+...-|+..|..+|.. ....|+|||-......++....|.. .....+-+||.+++..|..++..|.
T Consensus 236 ---------v~~a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~ 304 (567)
T KOG0345|consen 236 ---------VCEADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFR 304 (567)
T ss_pred ---------EecHHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHH
Confidence 11233477777777766 3457899999888888887777754 4788999999999999999999999
Q ss_pred CCCCCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEE
Q 000684 557 APGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYR 616 (1352)
Q Consensus 557 ~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~Vyr 616 (1352)
...+. +|++|+++++|||++..|.||.||||-+|..+.+|.||+.|.|......||-
T Consensus 305 ~~~~~---vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl 361 (567)
T KOG0345|consen 305 KLSNG---VLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFL 361 (567)
T ss_pred hccCc---eEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEe
Confidence 84333 8999999999999999999999999999999999999999999987765543
No 57
>PRK02362 ski2-like helicase; Provisional
Probab=99.81 E-value=6.2e-18 Score=218.43 Aligned_cols=317 Identities=21% Similarity=0.192 Sum_probs=201.7
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHH-HHHHHHHHhcCCCCcEEEEEChh-hHHHHHHHHHHHcC-C
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSV-SMLGFLQNAQQIPGPFLVVVPLS-TLSNWAKEFRKWLP-T 251 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaI-a~l~~L~~~~~~~gp~LIVvP~s-~L~nW~~Ef~kw~p-~ 251 (1352)
.+|+|+|.+++.-++ ..+.|+|++..||.|||+.+. +++..+. ..+.+|+|+|.. ++.++.++|.++.+ +
T Consensus 22 ~~l~p~Q~~ai~~~~---~~g~nvlv~APTGSGKTlia~lail~~l~----~~~kal~i~P~raLa~q~~~~~~~~~~~g 94 (737)
T PRK02362 22 EELYPPQAEAVEAGL---LDGKNLLAAIPTASGKTLIAELAMLKAIA----RGGKALYIVPLRALASEKFEEFERFEELG 94 (737)
T ss_pred CcCCHHHHHHHHHHH---hCCCcEEEECCCcchHHHHHHHHHHHHHh----cCCcEEEEeChHHHHHHHHHHHHHhhcCC
Confidence 379999999997643 478899999999999999874 4454443 246799999985 55888899988754 6
Q ss_pred CeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhH----hhhhccCcceEecchhcccCCcc--hHHH
Q 000684 252 MNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDK----AVLSKIKWNYLMVDEAHRLKNSE--AQLY 325 (1352)
Q Consensus 252 l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~----~~L~~i~w~~lIVDEAHrlKN~~--Skl~ 325 (1352)
+++.+++|+...... .....+|+|+|++.+..-. ..+. ..++|||||+|.+.+.. ..+-
T Consensus 95 ~~v~~~tGd~~~~~~-------------~l~~~~IiV~Tpek~~~llr~~~~~l~--~v~lvViDE~H~l~d~~rg~~le 159 (737)
T PRK02362 95 VRVGISTGDYDSRDE-------------WLGDNDIIVATSEKVDSLLRNGAPWLD--DITCVVVDEVHLIDSANRGPTLE 159 (737)
T ss_pred CEEEEEeCCcCcccc-------------ccCCCCEEEECHHHHHHHHhcChhhhh--hcCEEEEECccccCCCcchHHHH
Confidence 788888887543321 1125789999999764321 1222 45999999999996532 2222
Q ss_pred HHHHc---c-cccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhH
Q 000684 326 TTLSE---F-STKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIK 401 (1352)
Q Consensus 326 ~aL~~---l-~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~ 401 (1352)
..+.. + .....++||||. .|..++...+ ....+.+ .| +|.-+
T Consensus 160 ~il~rl~~~~~~~qii~lSATl--~n~~~la~wl---~~~~~~~------~~------------------rpv~l----- 205 (737)
T PRK02362 160 VTLAKLRRLNPDLQVVALSATI--GNADELADWL---DAELVDS------EW------------------RPIDL----- 205 (737)
T ss_pred HHHHHHHhcCCCCcEEEEcccC--CCHHHHHHHh---CCCcccC------CC------------------CCCCC-----
Confidence 22222 2 233568999997 3455554433 2211110 00 01000
Q ss_pred hhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCc
Q 000684 402 DVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSIND 481 (1352)
Q Consensus 402 dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~ 481 (1352)
...+.... . ++ .. .. +..+
T Consensus 206 ---------~~~v~~~~--~----~~----------~~----~~----------------~~~~---------------- 224 (737)
T PRK02362 206 ---------REGVFYGG--A----IH----------FD----DS----------------QREV---------------- 224 (737)
T ss_pred ---------eeeEecCC--e----ec----------cc----cc----------------cccC----------------
Confidence 00000000 0 00 00 00 0000
Q ss_pred hhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhc-----------------------------
Q 000684 482 TSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYK----------------------------- 532 (1352)
Q Consensus 482 ~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~----------------------------- 532 (1352)
....+...+ .++......++++||||+..+..+.++..|...
T Consensus 225 --------~~~~~~~~~-~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 295 (737)
T PRK02362 225 --------EVPSKDDTL-NLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETS 295 (737)
T ss_pred --------CCccchHHH-HHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCcccc
Confidence 000011111 122222346789999999988777666666432
Q ss_pred -------CCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEEEE----cC-----CCCChhhH
Q 000684 533 -------GFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVII----FD-----SDWNPQND 596 (1352)
Q Consensus 533 -------g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi----~D-----sdWNP~~d 596 (1352)
...+..+||+++..+|..+.+.|.+ +.+.+|++|.+.+.|||+++..+||. || .+.++..+
T Consensus 296 ~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~---G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y 372 (737)
T PRK02362 296 KDLADCVAKGAAFHHAGLSREHRELVEDAFRD---RLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEY 372 (737)
T ss_pred HHHHHHHHhCEEeecCCCCHHHHHHHHHHHHc---CCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHH
Confidence 1356778999999999999999997 45569999999999999998887775 77 47788999
Q ss_pred HHHhhhhcccCCCceEEEEEEecC
Q 000684 597 LQAMSRAHRIGQQEVVNIYRFVTS 620 (1352)
Q Consensus 597 lQAigRahRiGQkk~V~VyrLvt~ 620 (1352)
.|++|||+|.|....-.++-++..
T Consensus 373 ~Qm~GRAGR~g~d~~G~~ii~~~~ 396 (737)
T PRK02362 373 HQMAGRAGRPGLDPYGEAVLLAKS 396 (737)
T ss_pred HHHhhcCCCCCCCCCceEEEEecC
Confidence 999999999998755555656544
No 58
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=1.4e-18 Score=187.86 Aligned_cols=315 Identities=23% Similarity=0.275 Sum_probs=224.2
Q ss_pred CcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHH-HHHHHHHHHHhcCCCCcEEEEEChhhH-HHHHHHHHHHcCCCeE
Q 000684 177 LRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQ-SVSMLGFLQNAQQIPGPFLVVVPLSTL-SNWAKEFRKWLPTMNV 254 (1352)
Q Consensus 177 Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlq-aIa~l~~L~~~~~~~gp~LIVvP~s~L-~nW~~Ef~kw~p~l~v 254 (1352)
+...|..++--++ +|.++|.....|+|||.+ +|++|..+.-.. ..-.+||+.|+.-| .|-+.-+......+++
T Consensus 50 PS~IQqrAi~~Il----kGrdViaQaqSGTGKTa~~si~vlq~~d~~~-r~tQ~lilsPTRELa~Qi~~vi~alg~~mnv 124 (400)
T KOG0328|consen 50 PSAIQQRAIPQIL----KGRDVIAQAQSGTGKTATFSISVLQSLDISV-RETQALILSPTRELAVQIQKVILALGDYMNV 124 (400)
T ss_pred chHHHhhhhhhhh----cccceEEEecCCCCceEEEEeeeeeeccccc-ceeeEEEecChHHHHHHHHHHHHHhcccccc
Confidence 4445777777776 899999999999999987 677765554321 12358999999877 5666666665544554
Q ss_pred --EEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhh--HhhhhccCcceEecchhcccCC--cchHHHHHH
Q 000684 255 --IVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKD--KAVLSKIKWNYLMVDEAHRLKN--SEAQLYTTL 328 (1352)
Q Consensus 255 --vvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d--~~~L~~i~w~~lIVDEAHrlKN--~~Skl~~aL 328 (1352)
....|...--+.++..+ ...+|+.-|+..+..- ...|+--...++|+|||+.+.| ...++|..+
T Consensus 125 q~hacigg~n~gedikkld----------~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiy 194 (400)
T KOG0328|consen 125 QCHACIGGKNLGEDIKKLD----------YGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIY 194 (400)
T ss_pred eEEEEecCCccchhhhhhc----------ccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHH
Confidence 44455555444444322 3678999999988753 4556666789999999999955 567899999
Q ss_pred Hcccc-cCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhHhhhccC
Q 000684 329 SEFST-KNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIKDVEKSL 407 (1352)
Q Consensus 329 ~~l~~-~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~dv~~~L 407 (1352)
+.+.. ...+++|||- .+|+..+.++.+++...-
T Consensus 195 r~lp~~~Qvv~~SATl----p~eilemt~kfmtdpvri------------------------------------------ 228 (400)
T KOG0328|consen 195 RYLPPGAQVVLVSATL----PHEILEMTEKFMTDPVRI------------------------------------------ 228 (400)
T ss_pred HhCCCCceEEEEeccC----cHHHHHHHHHhcCCceeE------------------------------------------
Confidence 99874 4568889985 245555555444443210
Q ss_pred CCcEEEEEEecCCHH-HHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCchhhHH
Q 000684 408 PPKIERILRVEMSPL-QKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDTSKLE 486 (1352)
Q Consensus 408 Ppk~e~iv~v~Ls~~-Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~~~l~ 486 (1352)
.+-+-+++.. -+++|-....
T Consensus 229 -----lvkrdeltlEgIKqf~v~ve~------------------------------------------------------ 249 (400)
T KOG0328|consen 229 -----LVKRDELTLEGIKQFFVAVEK------------------------------------------------------ 249 (400)
T ss_pred -----EEecCCCchhhhhhheeeech------------------------------------------------------
Confidence 0001111111 0111110000
Q ss_pred HHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEE
Q 000684 487 RIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFL 566 (1352)
Q Consensus 487 ~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfL 566 (1352)
..=|+..|..|-..|-- ...+|||+..+..|+|.+-|...++.+..+||.+++++|.+++.+|..+.|. +|
T Consensus 250 ----EewKfdtLcdLYd~LtI--tQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~Sr---vL 320 (400)
T KOG0328|consen 250 ----EEWKFDTLCDLYDTLTI--TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSR---VL 320 (400)
T ss_pred ----hhhhHhHHHHHhhhheh--heEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCce---EE
Confidence 00134444444443321 2589999999999999999999999999999999999999999999997665 89
Q ss_pred eecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCCC
Q 000684 567 LSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKS 622 (1352)
Q Consensus 567 LSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~T 622 (1352)
|+|++-++||+++..+.||.||.|-|++.|++|+||.+|.|.+..+ ..||..+-
T Consensus 321 itTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGva--inFVk~~d 374 (400)
T KOG0328|consen 321 ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVA--INFVKSDD 374 (400)
T ss_pred EEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceE--EEEecHHH
Confidence 9999999999999999999999999999999999999999987654 67887663
No 59
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.80 E-value=8e-18 Score=200.03 Aligned_cols=320 Identities=16% Similarity=0.207 Sum_probs=197.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEECh-hhHHHHHHHHHHHcCCCeEEEEEcCchhHH---------HH
Q 000684 198 VILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPL-STLSNWAKEFRKWLPTMNVIVYVGTRASRE---------VC 267 (1352)
Q Consensus 198 ~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~-s~L~nW~~Ef~kw~p~l~vvvy~G~~~~r~---------~i 267 (1352)
+++...+|+|||.+++.++...... ...+.+++|+|. +++.++.+.+..++.. ++..++|...-.. ..
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~-~~~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKS-QKADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKRIKEMGDSEEFE 79 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhh-CCCCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHHHhccCCchhHH
Confidence 6889999999999987776554432 334678999997 5669999999998754 5555666543111 00
Q ss_pred HHHhhhccccCCCCccccEEEecHHHHHhhHhh--------hhccCcceEecchhcccCCcch-HHHHHHHccc--ccCe
Q 000684 268 QQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAV--------LSKIKWNYLMVDEAHRLKNSEA-QLYTTLSEFS--TKNK 336 (1352)
Q Consensus 268 ~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~--------L~~i~w~~lIVDEAHrlKN~~S-kl~~aL~~l~--~~~r 336 (1352)
.....+.. ........+++++|++.+...... +..+...+|||||||.+..... .+...+..+. ....
T Consensus 80 ~~~~~~~~-~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~~~ 158 (358)
T TIGR01587 80 HLFPLYIH-SNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDNDVPI 158 (358)
T ss_pred HHHHHHhh-chhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCE
Confidence 00000000 001123568999999987653221 2233447899999999965322 2333333332 2345
Q ss_pred EEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhHhhhccCCCcEEEEEE
Q 000684 337 LLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIKDVEKSLPPKIERILR 416 (1352)
Q Consensus 337 lLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~dv~~~LPpk~e~iv~ 416 (1352)
+++|||+- ..+-.++ ..+.... .....+..
T Consensus 159 i~~SATlp----~~l~~~~---------------~~~~~~~-------------------------~~~~~~~~------ 188 (358)
T TIGR01587 159 LLMSATLP----KFLKEYA---------------EKIGYVE-------------------------FNEPLDLK------ 188 (358)
T ss_pred EEEecCch----HHHHHHH---------------hcCCCcc-------------------------cccCCCCc------
Confidence 88999962 1111000 0000000 00000000
Q ss_pred ecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCchhhHHHHhhhcchhH
Q 000684 417 VEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDTSKLERIILSSGKLV 496 (1352)
Q Consensus 417 v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~~~l~~li~~SgKl~ 496 (1352)
.. +....|++..... ....|..
T Consensus 189 ----~~----------------------------------~~~~~~~~~~~~~--------------------~~~~~~~ 210 (358)
T TIGR01587 189 ----EE----------------------------------RRFERHRFIKIES--------------------DKVGEIS 210 (358)
T ss_pred ----cc----------------------------------cccccccceeecc--------------------ccccCHH
Confidence 00 0001122111000 0113444
Q ss_pred HHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCC--cEEEEeCCCCHHHHHHH----HHHhcCCCCCCcEEEeecC
Q 000684 497 ILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGF--QFQRLDGSTKAELRHQA----MDHFNAPGSEDFCFLLSTR 570 (1352)
Q Consensus 497 ~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~--~~~rldGs~~~~eR~~~----Id~Fn~~~s~~~vfLLSTr 570 (1352)
.+.+++..+ ..+.++|||++....++.+...|...+. .+..++|.++..+|... ++.|.+ +...+|++|.
T Consensus 211 ~l~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~---~~~~ilvaT~ 286 (358)
T TIGR01587 211 SLERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKK---NEKFVIVATQ 286 (358)
T ss_pred HHHHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcC---CCCeEEEECc
Confidence 555665443 3578999999999999999999988776 48999999999999764 888987 3345899999
Q ss_pred CCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCc----eEEEEEEecCC---CHHHHHHHHHHHHH
Q 000684 571 AGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQE----VVNIYRFVTSK---SVEEDILERAKKKM 635 (1352)
Q Consensus 571 Agg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk----~V~VyrLvt~~---TiEE~Il~ra~~K~ 635 (1352)
+.++|||+ .+++||.++.+ +..++|++||++|.|.+. .|.||.....+ .++.+++++-..++
T Consensus 287 ~~~~GiDi-~~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~t~~~~ 355 (358)
T TIGR01587 287 VIEASLDI-SADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEGKLFPYPYELVERTIQKL 355 (358)
T ss_pred chhceecc-CCCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCCCeecCCHHHHHHHHHHH
Confidence 99999999 58999998765 889999999999999873 46666555544 56666666665554
No 60
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.79 E-value=1e-17 Score=211.41 Aligned_cols=313 Identities=19% Similarity=0.214 Sum_probs=193.4
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCC-cEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEE-EEChhhH-HHHHHHHHHHcC
Q 000684 174 GGKLRDYQLEGLNFLVNSWRNDT-NVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLV-VVPLSTL-SNWAKEFRKWLP 250 (1352)
Q Consensus 174 ~~~Lr~yQlegvnwL~~~~~~~~-~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LI-VvP~s~L-~nW~~Ef~kw~p 250 (1352)
|.+++|||.+.+.-++ .|. ..++...+|+|||....+|+..+........ .|| +||...| .|-.+++.+|..
T Consensus 13 G~~PtpiQ~~~i~~il----~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~-rLv~~vPtReLa~Qi~~~~~~~~k 87 (844)
T TIGR02621 13 GYSPFPWQLSLAERFV----AGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPR-RLVYVVNRRTVVDQVTEEAEKIGE 87 (844)
T ss_pred CCCCCHHHHHHHHHHH----cCCCcceEecCCCCcccHHHHHhhccccccccccc-eEEEeCchHHHHHHHHHHHHHHHH
Confidence 5569999999999876 555 5777899999999765545443322111222 455 6698665 888888888763
Q ss_pred -------------------------CCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhh-----
Q 000684 251 -------------------------TMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAV----- 300 (1352)
Q Consensus 251 -------------------------~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~----- 300 (1352)
.+++.+++|.......+.. .....+|||.|.+.+.+..-+
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~----------l~~~p~IIVgT~D~i~sr~L~~gYg~ 157 (844)
T TIGR02621 88 RLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWML----------DPHRPAVIVGTVDMIGSRLLFSGYGC 157 (844)
T ss_pred HhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHh----------cCCCCcEEEECHHHHcCCcccccccc
Confidence 2667777777655443332 233679999998877553210
Q ss_pred ---hh------ccCcceEecchhcccCCcchHHHHHHHcc--cc----cCeEEEeccCCCCCHHHHHHHHhhcCCCCCCC
Q 000684 301 ---LS------KIKWNYLMVDEAHRLKNSEAQLYTTLSEF--ST----KNKLLITGTPLQNSVEELWALLHFLDHDKFKS 365 (1352)
Q Consensus 301 ---L~------~i~w~~lIVDEAHrlKN~~Skl~~aL~~l--~~----~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~ 365 (1352)
+. --+-.+||+||||-.......+.+++..+ .. ...+++|||+-. .+.+ +...+..+.
T Consensus 158 ~~~~~pi~ag~L~~v~~LVLDEADLd~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~-ei~~---l~~~~~~~p--- 230 (844)
T TIGR02621 158 GFKSRPLHAGFLGQDALIVHDEAHLEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRT-DGPD---RTTLLSAED--- 230 (844)
T ss_pred ccccccchhhhhccceEEEEehhhhccccHHHHHHHHHhcccCcccccceEEEEecCCCc-cHHH---HHHHHccCC---
Confidence 00 12367999999993333344444445432 11 246899999732 1111 111111000
Q ss_pred hhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhHhhhccCC-CcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccC
Q 000684 366 KDDFIQNYKNLSSFNENELANLHMELRPHILRRIIKDVEKSLP-PKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRG 444 (1352)
Q Consensus 366 ~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~dv~~~LP-pk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~ 444 (1352)
+...-.+. .+. ++..+. +..+.
T Consensus 231 ----------------------------~~i~V~~~----~l~a~ki~q~--v~v~~----------------------- 253 (844)
T TIGR02621 231 ----------------------------YKHPVLKK----RLAAKKIVKL--VPPSD----------------------- 253 (844)
T ss_pred ----------------------------ceeecccc----cccccceEEE--EecCh-----------------------
Confidence 00000000 000 000110 00000
Q ss_pred chhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCchhhHHHHhhhcchhHH-HHHHHHHhhhcCCeEEEEecchhHHH
Q 000684 445 NQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDTSKLERIILSSGKLVI-LDKLLVRLHETKHRVLIFSQMVRMLD 523 (1352)
Q Consensus 445 ~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~~~l~~li~~SgKl~~-L~kLL~~l~~~g~KVLIFSq~~~~ld 523 (1352)
..|+.. +..+...+...+.++||||+.+..++
T Consensus 254 -----------------------------------------------e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq 286 (844)
T TIGR02621 254 -----------------------------------------------EKFLSTMVKELNLLMKDSGGAILVFCRTVKHVR 286 (844)
T ss_pred -----------------------------------------------HHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHH
Confidence 001111 11111222345779999999999999
Q ss_pred HHHHHHHhcCCcEEEEeCCCCHHHHH-----HHHHHhcC----CC----CCCcEEEeecCCCccCCCCCccCEEEEcCCC
Q 000684 524 ILAEYMSYKGFQFQRLDGSTKAELRH-----QAMDHFNA----PG----SEDFCFLLSTRAGGLGINLATADTVIIFDSD 590 (1352)
Q Consensus 524 iL~d~L~~~g~~~~rldGs~~~~eR~-----~~Id~Fn~----~~----s~~~vfLLSTrAgg~GINL~~AdtVIi~Dsd 590 (1352)
.|...|...++ ..|+|.+++.+|. .++++|.. .. .....+||+|+++++|||+.. ++||+++.+
T Consensus 287 ~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP 363 (844)
T TIGR02621 287 KVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP 363 (844)
T ss_pred HHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC
Confidence 99999998887 8999999999999 78999976 21 112468999999999999975 999998776
Q ss_pred CChhhHHHHhhhhcccCCCce--EEEEEE
Q 000684 591 WNPQNDLQAMSRAHRIGQQEV--VNIYRF 617 (1352)
Q Consensus 591 WNP~~dlQAigRahRiGQkk~--V~VyrL 617 (1352)
+..++||+||++|.|.... +.|+.+
T Consensus 364 --~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 364 --FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred --HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 5799999999999999644 444433
No 61
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.79 E-value=6e-19 Score=196.89 Aligned_cols=323 Identities=24% Similarity=0.382 Sum_probs=220.7
Q ss_pred CCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHH-HHHHHHHHHHh------cCCCCcE-EEEEChhhH-HHHHHHHH
Q 000684 176 KLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQ-SVSMLGFLQNA------QQIPGPF-LVVVPLSTL-SNWAKEFR 246 (1352)
Q Consensus 176 ~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlq-aIa~l~~L~~~------~~~~gp~-LIVvP~s~L-~nW~~Ef~ 246 (1352)
...|.|++|+--.+ .|+..|-..=+|+|||+. ++.++...... ....||+ |||||..-| .|-..-+.
T Consensus 192 ~PTpIQvQGlPvvL----sGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie 267 (610)
T KOG0341|consen 192 HPTPIQVQGLPVVL----SGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIE 267 (610)
T ss_pred CCCceeecCcceEe----ecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHH
Confidence 67788999998776 688888888899999987 34444433322 1235675 999999776 34333333
Q ss_pred HH--------cCCCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhh--HhhhhccCcceEecchhcc
Q 000684 247 KW--------LPTMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKD--KAVLSKIKWNYLMVDEAHR 316 (1352)
Q Consensus 247 kw--------~p~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d--~~~L~~i~w~~lIVDEAHr 316 (1352)
.+ .|.++.....|.-.-+...... ....++++.|+..+..- +..+.---..|+.+|||+|
T Consensus 268 ~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v----------~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADR 337 (610)
T KOG0341|consen 268 QYVAALQEAGYPELRSLLCIGGVPVREQLDVV----------RRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADR 337 (610)
T ss_pred HHHHHHHhcCChhhhhhhhhcCccHHHHHHHH----------hcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHH
Confidence 33 3667777777777666644332 23689999999987642 2223223457999999999
Q ss_pred cCC--cchHHHHHHHcccccC-eEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcc
Q 000684 317 LKN--SEAQLYTTLSEFSTKN-KLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRP 393 (1352)
Q Consensus 317 lKN--~~Skl~~aL~~l~~~~-rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p 393 (1352)
+-. ....+.....-|+..+ .||.|||- |.. .+.|.. ..+++|
T Consensus 338 miDmGFEddir~iF~~FK~QRQTLLFSATM----------------P~K-------IQ~FAk------------SALVKP 382 (610)
T KOG0341|consen 338 MIDMGFEDDIRTIFSFFKGQRQTLLFSATM----------------PKK-------IQNFAK------------SALVKP 382 (610)
T ss_pred HhhccchhhHHHHHHHHhhhhheeeeeccc----------------cHH-------HHHHHH------------hhcccc
Confidence 954 3334444444555544 36667763 110 001100 000011
Q ss_pred hhhhhhhHhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCC
Q 000684 394 HILRRIIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGY 473 (1352)
Q Consensus 394 ~~LRR~k~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~ 473 (1352)
. .|.| |..| ..-++++.+
T Consensus 383 ----------------v---tvNV-----------------------GRAG--AAsldViQe------------------ 400 (610)
T KOG0341|consen 383 ----------------V---TVNV-----------------------GRAG--AASLDVIQE------------------ 400 (610)
T ss_pred ----------------e---EEec-----------------------cccc--ccchhHHHH------------------
Confidence 0 0111 1001 111222222
Q ss_pred CCCCCCCchhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHH
Q 000684 474 GGDTSINDTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMD 553 (1352)
Q Consensus 474 ~~~~~~~~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id 553 (1352)
...+..-.|++.|.+.|. ...-.||||+.-..-+|-|.+||-.+|+..+.|+|+..+++|..+|+
T Consensus 401 ------------vEyVkqEaKiVylLeCLQ---KT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~ 465 (610)
T KOG0341|consen 401 ------------VEYVKQEAKIVYLLECLQ---KTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIE 465 (610)
T ss_pred ------------HHHHHhhhhhhhHHHHhc---cCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHH
Confidence 234556678887766664 45678999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCCCHHHHHHH
Q 000684 554 HFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILE 629 (1352)
Q Consensus 554 ~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~TiEE~Il~ 629 (1352)
.|..+..+ +|+.|++++-|+++++..+||+||.+-.-.+|.+||||.+|-|.+.-. ..||.+++-|..++.
T Consensus 466 afr~gkKD---VLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiA--TTfINK~~~esvLlD 536 (610)
T KOG0341|consen 466 AFRAGKKD---VLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIA--TTFINKNQEESVLLD 536 (610)
T ss_pred HHhcCCCc---eEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCccee--eeeecccchHHHHHH
Confidence 99996555 899999999999999999999999999999999999999999987644 457888875554443
No 62
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.78 E-value=3.9e-18 Score=197.16 Aligned_cols=332 Identities=20% Similarity=0.296 Sum_probs=218.3
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHH-HHHHHHHHhc---CCCCcEEEEEChhhH-HHHHH---HHH
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSV-SMLGFLQNAQ---QIPGPFLVVVPLSTL-SNWAK---EFR 246 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaI-a~l~~L~~~~---~~~gp~LIVvP~s~L-~nW~~---Ef~ 246 (1352)
..|.+-|...+.-++ .|.+++.+.-+|+|||+..+ ..+..+.... +..--+|||||+..| .|-.. ++.
T Consensus 103 ~~MT~VQ~~ti~pll----~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll 178 (543)
T KOG0342|consen 103 ETMTPVQQKTIPPLL----EGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELL 178 (543)
T ss_pred cchhHHHHhhcCccC----CCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHH
Confidence 368888888888776 77899999999999998743 3444444322 111237999999877 44444 455
Q ss_pred HHcCCCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhhcc---CcceEecchhcccCC--cc
Q 000684 247 KWLPTMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKI---KWNYLMVDEAHRLKN--SE 321 (1352)
Q Consensus 247 kw~p~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~i---~w~~lIVDEAHrlKN--~~ 321 (1352)
++.+...+.+..|...-+...+.. . ..++++|.|+..+......-..+ .-+++|+|||+|+.. ..
T Consensus 179 ~~h~~~~v~~viGG~~~~~e~~kl---------~-k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~ 248 (543)
T KOG0342|consen 179 KYHESITVGIVIGGNNFSVEADKL---------V-KGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFE 248 (543)
T ss_pred hhCCCcceEEEeCCccchHHHHHh---------h-ccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccH
Confidence 566777887777776555443322 1 27899999999998653321111 237999999999943 33
Q ss_pred hHHHHHHHcccccC-eEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhh
Q 000684 322 AQLYTTLSEFSTKN-KLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRII 400 (1352)
Q Consensus 322 Skl~~aL~~l~~~~-rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k 400 (1352)
-.+-+++..+...+ .+|.|||- ...+.+|
T Consensus 249 ~di~~Ii~~lpk~rqt~LFSAT~-------------------------------------~~kV~~l------------- 278 (543)
T KOG0342|consen 249 EDVEQIIKILPKQRQTLLFSATQ-------------------------------------PSKVKDL------------- 278 (543)
T ss_pred HHHHHHHHhccccceeeEeeCCC-------------------------------------cHHHHHH-------------
Confidence 33444444443322 25556652 0011111
Q ss_pred HhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCC
Q 000684 401 KDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSIN 480 (1352)
Q Consensus 401 ~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~ 480 (1352)
.+-++.+ .|-| ++..+.+...
T Consensus 279 --------------------------~~~~L~~---------------------------d~~~-v~~~d~~~~~----- 299 (543)
T KOG0342|consen 279 --------------------------ARGALKR---------------------------DPVF-VNVDDGGERE----- 299 (543)
T ss_pred --------------------------HHHhhcC---------------------------CceE-eecCCCCCcc-----
Confidence 1100000 0000 0000000000
Q ss_pred chhhHHH---HhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcC
Q 000684 481 DTSKLER---IILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNA 557 (1352)
Q Consensus 481 ~~~~l~~---li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~ 557 (1352)
..+.++. +.....++.+|-.+|++.... .||+||+....+...+.+.|.+..+++.-|||..++..|..+..+|..
T Consensus 300 The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~k 378 (543)
T KOG0342|consen 300 THERLEQGYVVAPSDSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCK 378 (543)
T ss_pred hhhcccceEEeccccchHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhh
Confidence 0000000 111233466777788776544 899999999999999999999999999999999999999999999998
Q ss_pred CCCCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCCCHHHHHHHHHHHHHhh
Q 000684 558 PGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVL 637 (1352)
Q Consensus 558 ~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~TiEE~Il~ra~~K~~L 637 (1352)
..+. +|++|+++++|+|.+.+|.||-||++-+|..|++|+||.+|-|-+..- +-|++.. |.-+-+.-+|+-|
T Consensus 379 aesg---IL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~a--lL~l~p~---El~Flr~LK~lpl 450 (543)
T KOG0342|consen 379 AESG---ILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKA--LLLLAPW---ELGFLRYLKKLPL 450 (543)
T ss_pred cccc---eEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceE--EEEeChh---HHHHHHHHhhCCC
Confidence 7666 899999999999999999999999999999999999999998876443 4455543 4444444445444
Q ss_pred H
Q 000684 638 D 638 (1352)
Q Consensus 638 ~ 638 (1352)
.
T Consensus 451 ~ 451 (543)
T KOG0342|consen 451 E 451 (543)
T ss_pred c
Confidence 3
No 63
>PRK01172 ski2-like helicase; Provisional
Probab=99.78 E-value=8.2e-17 Score=206.47 Aligned_cols=309 Identities=20% Similarity=0.206 Sum_probs=193.0
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChh-hHHHHHHHHHHHcC-CC
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLS-TLSNWAKEFRKWLP-TM 252 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s-~L~nW~~Ef~kw~p-~l 252 (1352)
.+|+|+|.++++.+. .+.++|++.+||.|||+++...+...... .+.+|+|+|.. +..++.+++.++.. +.
T Consensus 21 ~~l~~~Q~~ai~~l~----~~~nvlv~apTGSGKTl~a~lail~~l~~---~~k~v~i~P~raLa~q~~~~~~~l~~~g~ 93 (674)
T PRK01172 21 FELYDHQRMAIEQLR----KGENVIVSVPTAAGKTLIAYSAIYETFLA---GLKSIYIVPLRSLAMEKYEELSRLRSLGM 93 (674)
T ss_pred CCCCHHHHHHHHHHh----cCCcEEEECCCCchHHHHHHHHHHHHHHh---CCcEEEEechHHHHHHHHHHHHHHhhcCC
Confidence 479999999999764 78899999999999999875444332222 35689999985 45888888887643 56
Q ss_pred eEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhh----HhhhhccCcceEecchhcccCCcc--hHHHH
Q 000684 253 NVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKD----KAVLSKIKWNYLMVDEAHRLKNSE--AQLYT 326 (1352)
Q Consensus 253 ~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d----~~~L~~i~w~~lIVDEAHrlKN~~--Skl~~ 326 (1352)
.+....|+...... .....+|+|+|++.+..- ...+. .+++|||||||.+.... ..+..
T Consensus 94 ~v~~~~G~~~~~~~-------------~~~~~dIiv~Tpek~~~l~~~~~~~l~--~v~lvViDEaH~l~d~~rg~~le~ 158 (674)
T PRK01172 94 RVKISIGDYDDPPD-------------FIKRYDVVILTSEKADSLIHHDPYIIN--DVGLIVADEIHIIGDEDRGPTLET 158 (674)
T ss_pred eEEEEeCCCCCChh-------------hhccCCEEEECHHHHHHHHhCChhHHh--hcCEEEEecchhccCCCccHHHHH
Confidence 77777776543211 012569999999875432 22232 46899999999996432 12222
Q ss_pred HH---Hcccc-cCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhHh
Q 000684 327 TL---SEFST-KNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIKD 402 (1352)
Q Consensus 327 aL---~~l~~-~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~d 402 (1352)
.+ +.+.. ...++||||+ .|..++.. |+....+.. .| +|
T Consensus 159 ll~~~~~~~~~~riI~lSATl--~n~~~la~---wl~~~~~~~------~~------------------r~--------- 200 (674)
T PRK01172 159 VLSSARYVNPDARILALSATV--SNANELAQ---WLNASLIKS------NF------------------RP--------- 200 (674)
T ss_pred HHHHHHhcCcCCcEEEEeCcc--CCHHHHHH---HhCCCccCC------CC------------------CC---------
Confidence 22 22233 3458899997 23444432 222221110 00 00
Q ss_pred hhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCch
Q 000684 403 VEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDT 482 (1352)
Q Consensus 403 v~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~ 482 (1352)
.|- ...++... .. +. +... .
T Consensus 201 ----vpl-~~~i~~~~------~~-------------------------------------~~-~~~~--------~--- 220 (674)
T PRK01172 201 ----VPL-KLGILYRK------RL-------------------------------------IL-DGYE--------R--- 220 (674)
T ss_pred ----CCe-EEEEEecC------ee-------------------------------------ee-cccc--------c---
Confidence 011 11111000 00 00 0000 0
Q ss_pred hhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhc-------------------------CCcEE
Q 000684 483 SKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYK-------------------------GFQFQ 537 (1352)
Q Consensus 483 ~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~-------------------------g~~~~ 537 (1352)
... .+..++......++++|||+......+.+...|... ...+.
T Consensus 221 ----------~~~-~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~ 289 (674)
T PRK01172 221 ----------SQV-DINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVA 289 (674)
T ss_pred ----------ccc-cHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEE
Confidence 000 022344444456788999999888777777666432 12356
Q ss_pred EEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEEEEcCC---------CCChhhHHHHhhhhcccCC
Q 000684 538 RLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDS---------DWNPQNDLQAMSRAHRIGQ 608 (1352)
Q Consensus 538 rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~Ds---------dWNP~~dlQAigRahRiGQ 608 (1352)
.++|+++.++|..+.+.|.++ ..-+|++|.+.+.|||+++ .+||++|. ++++..+.|++|||+|.|.
T Consensus 290 ~~hagl~~~eR~~ve~~f~~g---~i~VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~ 365 (674)
T PRK01172 290 FHHAGLSNEQRRFIEEMFRNR---YIKVIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGY 365 (674)
T ss_pred EecCCCCHHHHHHHHHHHHcC---CCeEEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCC
Confidence 689999999999999999973 4569999999999999985 67887764 3577788999999999997
Q ss_pred CceEEEEEEe
Q 000684 609 QEVVNIYRFV 618 (1352)
Q Consensus 609 kk~V~VyrLv 618 (1352)
......+-++
T Consensus 366 d~~g~~~i~~ 375 (674)
T PRK01172 366 DQYGIGYIYA 375 (674)
T ss_pred CCcceEEEEe
Confidence 6553333333
No 64
>PRK00254 ski2-like helicase; Provisional
Probab=99.77 E-value=9.7e-17 Score=206.91 Aligned_cols=317 Identities=22% Similarity=0.217 Sum_probs=197.7
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHH-HHHHHHHHHhcCCCCcEEEEEChhh-HHHHHHHHHHHcC-C
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQS-VSMLGFLQNAQQIPGPFLVVVPLST-LSNWAKEFRKWLP-T 251 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqa-Ia~l~~L~~~~~~~gp~LIVvP~s~-L~nW~~Ef~kw~p-~ 251 (1352)
.+|+|+|.+++.-.+ ..+.++|++..+|.|||+.+ ++++..+.. ..+.+|+|+|... +.++..+|..|.. +
T Consensus 22 ~~l~~~Q~~ai~~~~---~~g~nvlv~apTGsGKT~~~~l~il~~l~~---~~~~~l~l~P~~aLa~q~~~~~~~~~~~g 95 (720)
T PRK00254 22 EELYPPQAEALKSGV---LEGKNLVLAIPTASGKTLVAEIVMVNKLLR---EGGKAVYLVPLKALAEEKYREFKDWEKLG 95 (720)
T ss_pred CCCCHHHHHHHHHHH---hCCCcEEEECCCCcHHHHHHHHHHHHHHHh---cCCeEEEEeChHHHHHHHHHHHHHHhhcC
Confidence 379999999997422 37899999999999999987 555555443 2457999999854 5888888887743 5
Q ss_pred CeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhH----hhhhccCcceEecchhcccCC--cchHHH
Q 000684 252 MNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDK----AVLSKIKWNYLMVDEAHRLKN--SEAQLY 325 (1352)
Q Consensus 252 l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~----~~L~~i~w~~lIVDEAHrlKN--~~Skl~ 325 (1352)
+.+..++|+...... .....+|+|+|++.+..-. ..+. ..++|||||+|.+.. ....+.
T Consensus 96 ~~v~~~~Gd~~~~~~-------------~~~~~~IiV~Tpe~~~~ll~~~~~~l~--~l~lvViDE~H~l~~~~rg~~le 160 (720)
T PRK00254 96 LRVAMTTGDYDSTDE-------------WLGKYDIIIATAEKFDSLLRHGSSWIK--DVKLVVADEIHLIGSYDRGATLE 160 (720)
T ss_pred CEEEEEeCCCCCchh-------------hhccCCEEEEcHHHHHHHHhCCchhhh--cCCEEEEcCcCccCCccchHHHH
Confidence 788888887654321 1125789999999875321 1232 468999999999954 344455
Q ss_pred HHHHcccc-cCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhHhhh
Q 000684 326 TTLSEFST-KNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIKDVE 404 (1352)
Q Consensus 326 ~aL~~l~~-~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~dv~ 404 (1352)
..+..+.. ...++||||. .|..++...+ ....+.. .+ +|
T Consensus 161 ~il~~l~~~~qiI~lSATl--~n~~~la~wl---~~~~~~~------~~------------------rp----------- 200 (720)
T PRK00254 161 MILTHMLGRAQILGLSATV--GNAEELAEWL---NAELVVS------DW------------------RP----------- 200 (720)
T ss_pred HHHHhcCcCCcEEEEEccC--CCHHHHHHHh---CCccccC------CC------------------CC-----------
Confidence 55555543 4458899997 2355554332 2211100 00 00
Q ss_pred ccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCchhh
Q 000684 405 KSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDTSK 484 (1352)
Q Consensus 405 ~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~~~ 484 (1352)
.|.... ++ .. .+.+.. .. ..
T Consensus 201 --v~l~~~-~~-~~--------------------------------------------~~~~~~--~~-----~~----- 220 (720)
T PRK00254 201 --VKLRKG-VF-YQ--------------------------------------------GFLFWE--DG-----KI----- 220 (720)
T ss_pred --Ccceee-Ee-cC--------------------------------------------Ceeecc--Cc-----ch-----
Confidence 000000 00 00 000000 00 00
Q ss_pred HHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHh---------------------------------
Q 000684 485 LERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSY--------------------------------- 531 (1352)
Q Consensus 485 l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~--------------------------------- 531 (1352)
... ...+..++..+...+.++|||++.......++..|..
T Consensus 221 -~~~------~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 293 (720)
T PRK00254 221 -ERF------PNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKA 293 (720)
T ss_pred -hcc------hHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHH
Confidence 000 0001122223334577899999887765544433321
Q ss_pred cCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEEEE-------cCCCC-ChhhHHHHhhhh
Q 000684 532 KGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVII-------FDSDW-NPQNDLQAMSRA 603 (1352)
Q Consensus 532 ~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi-------~DsdW-NP~~dlQAigRa 603 (1352)
....+..+||+++.++|..+.+.|.++ ...+|++|.+.+.|+|+++.++||. ++.+. ....+.|++|||
T Consensus 294 l~~gv~~hHagl~~~eR~~ve~~F~~G---~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRA 370 (720)
T PRK00254 294 LRGGVAFHHAGLGRTERVLIEDAFREG---LIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRA 370 (720)
T ss_pred HhhCEEEeCCCCCHHHHHHHHHHHHCC---CCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhcc
Confidence 123477899999999999999999973 4569999999999999998887774 33222 345779999999
Q ss_pred cccCCCceEEEEEEecCCC
Q 000684 604 HRIGQQEVVNIYRFVTSKS 622 (1352)
Q Consensus 604 hRiGQkk~V~VyrLvt~~T 622 (1352)
+|.|....-.++-+++.+.
T Consensus 371 GR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 371 GRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred CCCCcCCCceEEEEecCcc
Confidence 9998766555666665543
No 65
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.76 E-value=1.4e-16 Score=199.50 Aligned_cols=128 Identities=21% Similarity=0.261 Sum_probs=107.3
Q ss_pred hcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecC
Q 000684 491 SSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTR 570 (1352)
Q Consensus 491 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTr 570 (1352)
...|..++.+.+..+...+..|||||......+.|...|...|+++..|+|.+...+|..+...|+. . .++|+|+
T Consensus 406 ~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~---g--~VlIATd 480 (762)
T TIGR03714 406 LPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQK---G--AVTVATS 480 (762)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCC---C--eEEEEcc
Confidence 4568888999998888899999999999999999999999999999999999998887666665554 2 4899999
Q ss_pred CCccCCCCC---------ccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCCCHHHHHHH
Q 000684 571 AGGLGINLA---------TADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILE 629 (1352)
Q Consensus 571 Agg~GINL~---------~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~TiEE~Il~ 629 (1352)
.+|+|+|+. ..++||.|+++-+. .+.|+.||++|.|....+. .|++ .|+.++.
T Consensus 481 mAgRGtDI~l~~~v~~~GGL~vIit~~~ps~r-id~qr~GRtGRqG~~G~s~--~~is---~eD~l~~ 542 (762)
T TIGR03714 481 MAGRGTDIKLGKGVAELGGLAVIGTERMENSR-VDLQLRGRSGRQGDPGSSQ--FFVS---LEDDLIK 542 (762)
T ss_pred ccccccCCCCCccccccCCeEEEEecCCCCcH-HHHHhhhcccCCCCceeEE--EEEc---cchhhhh
Confidence 999999999 78999999999765 4599999999999987653 3443 3555544
No 66
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=2.6e-16 Score=198.70 Aligned_cols=130 Identities=20% Similarity=0.242 Sum_probs=110.3
Q ss_pred hcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecC
Q 000684 491 SSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTR 570 (1352)
Q Consensus 491 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTr 570 (1352)
...|...|.+++......+.+|||||......+.|...|...|+++..|+|.+...++..+...+.. . .++|+|+
T Consensus 410 ~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~---g--~VlIATd 484 (790)
T PRK09200 410 LDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQK---G--AVTVATN 484 (790)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCC---C--eEEEEcc
Confidence 4568888888888877889999999999999999999999999999999999988887776666654 2 4899999
Q ss_pred CCccCCCC---CccC-----EEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCCCHHHHHHHH
Q 000684 571 AGGLGINL---ATAD-----TVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILER 630 (1352)
Q Consensus 571 Agg~GINL---~~Ad-----tVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~TiEE~Il~r 630 (1352)
.+|+|+|+ ..+. +||.||.+-|+..|.|+.||++|.|+...+. .|++ .|+.++.+
T Consensus 485 mAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~--~~is---~eD~l~~~ 547 (790)
T PRK09200 485 MAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQ--FFIS---LEDDLLKR 547 (790)
T ss_pred chhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEE--EEEc---chHHHHHh
Confidence 99999999 4676 9999999999999999999999999986553 3343 35666654
No 67
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.75 E-value=1.8e-16 Score=183.99 Aligned_cols=365 Identities=22% Similarity=0.285 Sum_probs=204.4
Q ss_pred CCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHH-HHHHHHHHHh----cCCCCc-EEEEEChhhH-HHHHHHHHHH
Q 000684 176 KLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQS-VSMLGFLQNA----QQIPGP-FLVVVPLSTL-SNWAKEFRKW 248 (1352)
Q Consensus 176 ~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqa-Ia~l~~L~~~----~~~~gp-~LIVvP~s~L-~nW~~Ef~kw 248 (1352)
.+...|..++--++ .|+.+++-..+|+|||+.- |.++..|... .+..|| .|||||+.-| .|-...+.+.
T Consensus 159 ~pTsVQkq~IP~lL----~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKL 234 (708)
T KOG0348|consen 159 APTSVQKQAIPVLL----EGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKL 234 (708)
T ss_pred ccchHhhcchhhhh----cCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHH
Confidence 55666777777776 5899999999999999984 4566666543 234566 4999999665 7777777777
Q ss_pred cCCCeEEE---EEcCch-hHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhhcc---CcceEecchhcccCCc-
Q 000684 249 LPTMNVIV---YVGTRA-SREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKI---KWNYLMVDEAHRLKNS- 320 (1352)
Q Consensus 249 ~p~l~vvv---y~G~~~-~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~i---~w~~lIVDEAHrlKN~- 320 (1352)
......+| ..|... .-+..+ -....+|+|.|+..+......-..| ...+||+|||.||..-
T Consensus 235 l~~~hWIVPg~lmGGEkkKSEKAR-----------LRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLG 303 (708)
T KOG0348|consen 235 LKPFHWIVPGVLMGGEKKKSEKAR-----------LRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELG 303 (708)
T ss_pred hcCceEEeeceeecccccccHHHH-----------HhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhcc
Confidence 65555442 344432 222111 1237899999999998764433333 4568999999998432
Q ss_pred -chHHHHHHHcccccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhh
Q 000684 321 -EAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRI 399 (1352)
Q Consensus 321 -~Skl~~aL~~l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~ 399 (1352)
+-.+.++|. .+.... +..........+++.+|-.-.|.-.
T Consensus 304 fekdit~Il~---------------------------~v~~~~------------~~e~~~~~lp~q~q~mLlSATLtd~ 344 (708)
T KOG0348|consen 304 FEKDITQILK---------------------------AVHSIQ------------NAECKDPKLPHQLQNMLLSATLTDG 344 (708)
T ss_pred chhhHHHHHH---------------------------HHhhcc------------chhcccccccHHHHhHhhhhhhHHH
Confidence 212222222 221100 0000000000011111111111000
Q ss_pred hHhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCC
Q 000684 400 IKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSI 479 (1352)
Q Consensus 400 k~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~ 479 (1352)
...+. ++.-+....|.++-+..| +..-...+.-+|.-|+--. . +...
T Consensus 345 V~rLa-~~sLkDpv~I~ld~s~~~-------------------------~~p~~~a~~ev~~~~~~~~-----l--~~~~ 391 (708)
T KOG0348|consen 345 VNRLA-DLSLKDPVYISLDKSHSQ-------------------------LNPKDKAVQEVDDGPAGDK-----L--DSFA 391 (708)
T ss_pred HHHHh-hccccCceeeeccchhhh-------------------------cCcchhhhhhcCCcccccc-----c--cccc
Confidence 00000 000011111111000000 0000011111222111110 0 0011
Q ss_pred CchhhHHHHhhhcchh--HHHHHHHHHhh--hcCCeEEEEecchhHHHHHHHHHH----h------------------cC
Q 000684 480 NDTSKLERIILSSGKL--VILDKLLVRLH--ETKHRVLIFSQMVRMLDILAEYMS----Y------------------KG 533 (1352)
Q Consensus 480 ~~~~~l~~li~~SgKl--~~L~kLL~~l~--~~g~KVLIFSq~~~~ldiL~d~L~----~------------------~g 533 (1352)
..+.-+++.+.-.+|+ +.|..+|.... ....|+|||.....+++.=.+.|. . .+
T Consensus 392 iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~ 471 (708)
T KOG0348|consen 392 IPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMD 471 (708)
T ss_pred CcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhc
Confidence 1222223333334444 44555555443 234588999888887665544443 1 24
Q ss_pred CcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEE
Q 000684 534 FQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVN 613 (1352)
Q Consensus 534 ~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~ 613 (1352)
.+|.||+|+|++++|..++..|.... -++|+||+++++||||+..+.||-||++..+..|++|+||.-|+|-+..-.
T Consensus 472 ~k~~rLHGsm~QeeRts~f~~Fs~~~---~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~al 548 (708)
T KOG0348|consen 472 LKFYRLHGSMEQEERTSVFQEFSHSR---RAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEAL 548 (708)
T ss_pred ceEEEecCchhHHHHHHHHHhhcccc---ceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceE
Confidence 57999999999999999999999843 359999999999999999999999999999999999999999999987654
Q ss_pred EEEEecCCCHHHHHHHHHHHH
Q 000684 614 IYRFVTSKSVEEDILERAKKK 634 (1352)
Q Consensus 614 VyrLvt~~TiEE~Il~ra~~K 634 (1352)
. |+... |+..+..++.+
T Consensus 549 L--fL~P~--Eaey~~~l~~~ 565 (708)
T KOG0348|consen 549 L--FLLPS--EAEYVNYLKKH 565 (708)
T ss_pred E--Eeccc--HHHHHHHHHhh
Confidence 3 33333 33344444444
No 68
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.74 E-value=1.1e-16 Score=186.21 Aligned_cols=331 Identities=20% Similarity=0.273 Sum_probs=230.0
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHH-HHHHHHHHHHhcCC--CC-cEEEEEChhhH-HHHHHHHHHHc
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQ-SVSMLGFLQNAQQI--PG-PFLVVVPLSTL-SNWAKEFRKWL 249 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlq-aIa~l~~L~~~~~~--~g-p~LIVvP~s~L-~nW~~Ef~kw~ 249 (1352)
..+...|...+-..+ .|..+|-|.-+|+|||+. .|.+|..|+...-. .| -.|||.|+.-| .|--..+.+..
T Consensus 90 v~~teiQ~~~Ip~aL----~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvg 165 (758)
T KOG0343|consen 90 VKMTEIQRDTIPMAL----QGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVG 165 (758)
T ss_pred ccHHHHHHhhcchhc----cCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHh
Confidence 367888999998776 789999999999999988 45677777764321 11 27999999877 55555555543
Q ss_pred --CCCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhH---hhhhccCcceEecchhcccCCc--ch
Q 000684 250 --PTMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDK---AVLSKIKWNYLMVDEAHRLKNS--EA 322 (1352)
Q Consensus 250 --p~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~---~~L~~i~w~~lIVDEAHrlKN~--~S 322 (1352)
-++....+.|...-..... +....||+|+|+..++... ..|..-..++||+|||.|+... ..
T Consensus 166 k~h~fSaGLiiGG~~~k~E~e-----------Ri~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~ 234 (758)
T KOG0343|consen 166 KHHDFSAGLIIGGKDVKFELE-----------RISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKK 234 (758)
T ss_pred hccccccceeecCchhHHHHH-----------hhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHH
Confidence 2567777778776433221 2236899999999998754 3455567899999999999654 33
Q ss_pred HHHHHHHcccc-cCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhH
Q 000684 323 QLYTTLSEFST-KNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIK 401 (1352)
Q Consensus 323 kl~~aL~~l~~-~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~ 401 (1352)
.+..++..+.. +..||.|||+-. ++.+|.-| ++-+|..
T Consensus 235 tL~~Ii~~lP~~RQTLLFSATqt~-svkdLaRL-sL~dP~~--------------------------------------- 273 (758)
T KOG0343|consen 235 TLNAIIENLPKKRQTLLFSATQTK-SVKDLARL-SLKDPVY--------------------------------------- 273 (758)
T ss_pred HHHHHHHhCChhheeeeeecccch-hHHHHHHh-hcCCCcE---------------------------------------
Confidence 45555666644 345888999843 33433221 1111111
Q ss_pred hhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCc
Q 000684 402 DVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSIND 481 (1352)
Q Consensus 402 dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~ 481 (1352)
..|... ...+... .|++. |++
T Consensus 274 -----------vsvhe~----------------------a~~atP~-------~L~Q~----y~~--------------- 294 (758)
T KOG0343|consen 274 -----------VSVHEN----------------------AVAATPS-------NLQQS----YVI--------------- 294 (758)
T ss_pred -----------EEEecc----------------------ccccChh-------hhhhe----EEE---------------
Confidence 111100 0000000 01110 111
Q ss_pred hhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHh--cCCcEEEEeCCCCHHHHHHHHHHhcCCC
Q 000684 482 TSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSY--KGFQFQRLDGSTKAELRHQAMDHFNAPG 559 (1352)
Q Consensus 482 ~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~--~g~~~~rldGs~~~~eR~~~Id~Fn~~~ 559 (1352)
+.--.|+.+|-..|.... ..|.|||......+..+...+.. -|++...|+|.+++..|..+..+|..
T Consensus 295 -------v~l~~Ki~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~-- 363 (758)
T KOG0343|consen 295 -------VPLEDKIDMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVR-- 363 (758)
T ss_pred -------EehhhHHHHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHH--
Confidence 112347777777776643 45789998888888877776653 39999999999999999999999987
Q ss_pred CCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCCCHHHHHHHHHHHHH
Q 000684 560 SEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKM 635 (1352)
Q Consensus 560 s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~TiEE~Il~ra~~K~ 635 (1352)
..-++|++|+++++||+++.+|.||-+|.|-+-..|++|.||+.|.+......+| ++. +-||.|+.+.++|.
T Consensus 364 -~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~--L~p-sEeE~~l~~Lq~k~ 435 (758)
T KOG0343|consen 364 -KRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLM--LTP-SEEEAMLKKLQKKK 435 (758)
T ss_pred -hcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEE--Ecc-hhHHHHHHHHHHcC
Confidence 3447999999999999999999999999999999999999999999988777544 333 34688998888775
No 69
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.74 E-value=2.8e-16 Score=197.46 Aligned_cols=334 Identities=17% Similarity=0.229 Sum_probs=204.6
Q ss_pred cccCCCccCCCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHH----------HHHHHh--cCCCCcEEEE
Q 000684 165 LDEQPEWLRGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSML----------GFLQNA--QQIPGPFLVV 232 (1352)
Q Consensus 165 ~~~~P~~~~~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l----------~~L~~~--~~~~gp~LIV 232 (1352)
+-..|..+....|++.|.+.-+.++..+..+.++|+..++|+|||.|.--+| ..+... ....++++|+
T Consensus 149 ~~~n~~~~~~~~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt 228 (675)
T PHA02653 149 ILGNPEPFSKIPLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLS 228 (675)
T ss_pred ccCCCCccccccCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEE
Confidence 3344555556789999999999999999999999999999999998843222 222110 1234589999
Q ss_pred EChhhH-HHHHHHHHHHc-----CCCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhhccCc
Q 000684 233 VPLSTL-SNWAKEFRKWL-----PTMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKW 306 (1352)
Q Consensus 233 vP~s~L-~nW~~Ef~kw~-----p~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~i~w 306 (1352)
+|...+ .+...++.... ++..+.+..|+....... ......++++.|...... .| -..
T Consensus 229 ~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~-----------t~~k~~~Ilv~T~~L~l~---~L--~~v 292 (675)
T PHA02653 229 LPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDELIN-----------TNPKPYGLVFSTHKLTLN---KL--FDY 292 (675)
T ss_pred CcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcchHHhh-----------cccCCCCEEEEeCccccc---cc--ccC
Confidence 998655 66677776533 345566666765532100 011256899998543111 12 257
Q ss_pred ceEecchhcccCCcchHHHHHHHcccc--cCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHH
Q 000684 307 NYLMVDEAHRLKNSEAQLYTTLSEFST--KNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENEL 384 (1352)
Q Consensus 307 ~~lIVDEAHrlKN~~Skl~~aL~~l~~--~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i 384 (1352)
++|||||||..-...-.+...++.... ...+++|||.-. .+..+ ..|+..
T Consensus 293 ~~VVIDEaHEr~~~~DllL~llk~~~~~~rq~ILmSATl~~-dv~~l---~~~~~~------------------------ 344 (675)
T PHA02653 293 GTVIIDEVHEHDQIGDIIIAVARKHIDKIRSLFLMTATLED-DRDRI---KEFFPN------------------------ 344 (675)
T ss_pred CEEEccccccCccchhHHHHHHHHhhhhcCEEEEEccCCcH-hHHHH---HHHhcC------------------------
Confidence 899999999986554444444444322 246899999721 12222 122210
Q ss_pred HHHHHhhcchhhhhhhHhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCcc
Q 000684 385 ANLHMELRPHILRRIIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPF 464 (1352)
Q Consensus 385 ~~L~~~L~p~~LRR~k~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~ 464 (1352)
|..+. +. ...+.|-....+.....+.+...|-
T Consensus 345 --------p~~I~-I~---grt~~pV~~~yi~~~~~~~~~~~y~------------------------------------ 376 (675)
T PHA02653 345 --------PAFVH-IP---GGTLFPISEVYVKNKYNPKNKRAYI------------------------------------ 376 (675)
T ss_pred --------CcEEE-eC---CCcCCCeEEEEeecCcccccchhhh------------------------------------
Confidence 00000 00 0001121111111111111100000
Q ss_pred ccccccCCCCCCCCCCchhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhc--CCcEEEEeCC
Q 000684 465 LFESADHGYGGDTSINDTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYK--GFQFQRLDGS 542 (1352)
Q Consensus 465 L~~~~e~~~~~~~~~~~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~--g~~~~rldGs 542 (1352)
...|..++..+.......+..+|||+.....++.+...|... ++.+..|+|+
T Consensus 377 --------------------------~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~ 430 (675)
T PHA02653 377 --------------------------EEEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGK 430 (675)
T ss_pred --------------------------HHHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCC
Confidence 000111111121111224568999999999999999999877 7999999999
Q ss_pred CCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEEEEcC----CC--------CChhhHHHHhhhhcccCCCc
Q 000684 543 TKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFD----SD--------WNPQNDLQAMSRAHRIGQQE 610 (1352)
Q Consensus 543 ~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~D----sd--------WNP~~dlQAigRahRiGQkk 610 (1352)
+++. ++++++|.. ++...+|++|+.+++||++.++++||-++ |. .+...+.||.||++|. +
T Consensus 431 Lsq~--eq~l~~ff~--~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~-- 503 (675)
T PHA02653 431 VPNI--DEILEKVYS--SKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-S-- 503 (675)
T ss_pred cCHH--HHHHHHHhc--cCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-C--
Confidence 9974 567788742 23456999999999999999999999987 22 2667889999999998 3
Q ss_pred eEEEEEEecCCCH
Q 000684 611 VVNIYRFVTSKSV 623 (1352)
Q Consensus 611 ~V~VyrLvt~~Ti 623 (1352)
+-.+|+|+++...
T Consensus 504 ~G~c~rLyt~~~~ 516 (675)
T PHA02653 504 PGTYVYFYDLDLL 516 (675)
T ss_pred CCeEEEEECHHHh
Confidence 4666999998764
No 70
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.74 E-value=4.7e-17 Score=191.58 Aligned_cols=323 Identities=21% Similarity=0.290 Sum_probs=207.9
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHH-HHHHHHHHHhcC---------CCCcEEEEEChhhH-HHHH
Q 000684 174 GGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQS-VSMLGFLQNAQQ---------IPGPFLVVVPLSTL-SNWA 242 (1352)
Q Consensus 174 ~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqa-Ia~l~~L~~~~~---------~~gp~LIVvP~s~L-~nW~ 242 (1352)
+..+.|+|.-++.-+. .|.+.+.+..+|.|||..- |.++.+++.... .....||++|+.-| .|-.
T Consensus 94 ~~~ptpvQk~sip~i~----~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~ 169 (482)
T KOG0335|consen 94 YTKPTPVQKYSIPIIS----GGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIY 169 (482)
T ss_pred ccCCCcceeeccceee----cCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHH
Confidence 3478889998888765 7889999999999999884 457777776532 12347999999655 8999
Q ss_pred HHHHHHcC--CCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhh--HhhhhccCcceEecchhcccC
Q 000684 243 KEFRKWLP--TMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKD--KAVLSKIKWNYLMVDEAHRLK 318 (1352)
Q Consensus 243 ~Ef~kw~p--~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d--~~~L~~i~w~~lIVDEAHrlK 318 (1352)
.|..++.. .+++++.+|....+...+. ....+|++++|...+..- ...+..-...++|+|||.++-
T Consensus 170 nea~k~~~~s~~~~~~~ygg~~~~~q~~~----------~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMl 239 (482)
T KOG0335|consen 170 NEARKFSYLSGMKSVVVYGGTDLGAQLRF----------IKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRML 239 (482)
T ss_pred HHHHhhcccccceeeeeeCCcchhhhhhh----------hccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhh
Confidence 99999864 4666666666554443332 234799999999987653 222222234599999999984
Q ss_pred CcchHHHHHHHcccccCe--EEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhh
Q 000684 319 NSEAQLYTTLSEFSTKNK--LLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHIL 396 (1352)
Q Consensus 319 N~~Skl~~aL~~l~~~~r--lLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~L 396 (1352)
.. +.|-..-| +.-+++|.+|+..-+ | |-..|. ..+ +
T Consensus 240 D~--------mgF~p~Ir~iv~~~~~~~~~~~qt~------m----------FSAtfp-------~~i---q-------- 277 (482)
T KOG0335|consen 240 DE--------MGFEPQIRKIVEQLGMPPKNNRQTL------L----------FSATFP-------KEI---Q-------- 277 (482)
T ss_pred hh--------ccccccHHHHhcccCCCCccceeEE------E----------EeccCC-------hhh---h--------
Confidence 31 12222211 122233322221100 0 000000 000 1
Q ss_pred hhhhHhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCC
Q 000684 397 RRIIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGD 476 (1352)
Q Consensus 397 RR~k~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~ 476 (1352)
|+..+.. ..++..+.-+.-+..
T Consensus 278 -~l~~~fl---------------------------~~~yi~laV~rvg~~------------------------------ 299 (482)
T KOG0335|consen 278 -RLAADFL---------------------------KDNYIFLAVGRVGST------------------------------ 299 (482)
T ss_pred -hhHHHHh---------------------------hccceEEEEeeeccc------------------------------
Confidence 1111111 111111100000000
Q ss_pred CCCCchhhHHHHhhhcchhHHHHHHHHHhhh---c----CCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHH
Q 000684 477 TSINDTSKLERIILSSGKLVILDKLLVRLHE---T----KHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRH 549 (1352)
Q Consensus 477 ~~~~~~~~l~~li~~SgKl~~L~kLL~~l~~---~----g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~ 549 (1352)
..+.... -..+....|...|.++|..... . .++++||+...++++.|+.+|...++++.-|+|..++.+|.
T Consensus 300 -~~ni~q~-i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~ 377 (482)
T KOG0335|consen 300 -SENITQK-ILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIERE 377 (482)
T ss_pred -cccceeE-eeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHH
Confidence 0000000 0011223444445555544331 1 24899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEE
Q 000684 550 QAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIY 615 (1352)
Q Consensus 550 ~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~Vy 615 (1352)
+++..|...... +|++|.++.+|||+...++||+||.+-+-..|++|+||++|.|+.-.++.+
T Consensus 378 ~al~~Fr~g~~p---vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf 440 (482)
T KOG0335|consen 378 QALNDFRNGKAP---VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSF 440 (482)
T ss_pred HHHHHhhcCCcc---eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEE
Confidence 999999985444 899999999999999999999999999999999999999999999666544
No 71
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.74 E-value=4.6e-17 Score=183.17 Aligned_cols=316 Identities=21% Similarity=0.319 Sum_probs=217.5
Q ss_pred CCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHH--HHH---HHHHhcCCCCc-EEEEEChhhH-HHHHHHHHHH
Q 000684 176 KLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVS--MLG---FLQNAQQIPGP-FLVVVPLSTL-SNWAKEFRKW 248 (1352)
Q Consensus 176 ~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa--~l~---~L~~~~~~~gp-~LIVvP~s~L-~nW~~Ef~kw 248 (1352)
++.|.|-++---++ +|..+|....+|.|||+.-+. |+. ......+..+| +||++|..-| .+-+-|..++
T Consensus 242 KPtPIqSQaWPI~L----QG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~ky 317 (629)
T KOG0336|consen 242 KPTPIQSQAWPILL----QGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKY 317 (629)
T ss_pred CCCcchhcccceee----cCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHh
Confidence 55666655433333 899999999999999986442 221 11112223344 6999998776 5666676665
Q ss_pred -cCCCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhh--HhhhhccCcceEecchhcccCC--cchH
Q 000684 249 -LPTMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKD--KAVLSKIKWNYLMVDEAHRLKN--SEAQ 323 (1352)
Q Consensus 249 -~p~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d--~~~L~~i~w~~lIVDEAHrlKN--~~Sk 323 (1352)
+.++..++++|....-..+.+. ..+++++|.|+..+..- ..++.--...|||+|||+++.. .+-+
T Consensus 318 syng~ksvc~ygggnR~eqie~l----------krgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpq 387 (629)
T KOG0336|consen 318 SYNGLKSVCVYGGGNRNEQIEDL----------KRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQ 387 (629)
T ss_pred hhcCcceEEEecCCCchhHHHHH----------hcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHH
Confidence 3567777777766555555443 23789999999988642 3344444678999999999965 5678
Q ss_pred HHHHHHcccccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhHhh
Q 000684 324 LYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIKDV 403 (1352)
Q Consensus 324 l~~aL~~l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~dv 403 (1352)
+.+.|..++..+...||..-.... +||+....
T Consensus 388 IrkilldiRPDRqtvmTSATWP~~------------------------------------------------VrrLa~sY 419 (629)
T KOG0336|consen 388 IRKILLDIRPDRQTVMTSATWPEG------------------------------------------------VRRLAQSY 419 (629)
T ss_pred HHHHhhhcCCcceeeeecccCchH------------------------------------------------HHHHHHHh
Confidence 889999998888877764322111 12221111
Q ss_pred hccCCCcEEEEEEec---CCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCC
Q 000684 404 EKSLPPKIERILRVE---MSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSIN 480 (1352)
Q Consensus 404 ~~~LPpk~e~iv~v~---Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~ 480 (1352)
.+ .-.+++|. |... . . .++ +++
T Consensus 420 ~K-----ep~~v~vGsLdL~a~----------------~-s--------------VkQ-----~i~-------------- 444 (629)
T KOG0336|consen 420 LK-----EPMIVYVGSLDLVAV----------------K-S--------------VKQ-----NII-------------- 444 (629)
T ss_pred hh-----CceEEEecccceeee----------------e-e--------------eee-----eEE--------------
Confidence 11 11122221 0000 0 0 000 000
Q ss_pred chhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCC
Q 000684 481 DTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGS 560 (1352)
Q Consensus 481 ~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s 560 (1352)
+-..+.|+.++..++..+ ....|||||+....|+|-|..-|...|+...-|||+-.+.+|+.+++.|..
T Consensus 445 -------v~~d~~k~~~~~~f~~~m-s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ks--- 513 (629)
T KOG0336|consen 445 -------VTTDSEKLEIVQFFVANM-SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKS--- 513 (629)
T ss_pred -------ecccHHHHHHHHHHHHhc-CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhc---
Confidence 001244555555555554 467799999999999999999999999999999999999999999999986
Q ss_pred CCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCC
Q 000684 561 EDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSK 621 (1352)
Q Consensus 561 ~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~ 621 (1352)
+.+.+|++|+.+++||++....+|+.||.+-|-..|.+++||.+|.|.+..- ..|++.+
T Consensus 514 G~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~s--is~lt~~ 572 (629)
T KOG0336|consen 514 GEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTS--ISFLTRN 572 (629)
T ss_pred CceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcce--EEEEehh
Confidence 5667999999999999999999999999999999999999999999988654 3455544
No 72
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.73 E-value=7e-16 Score=187.85 Aligned_cols=309 Identities=18% Similarity=0.220 Sum_probs=218.4
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEECh-hhHHHHHHHHHHHcCCCe
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPL-STLSNWAKEFRKWLPTMN 253 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~-s~L~nW~~Ef~kw~p~l~ 253 (1352)
..+|+=|.++++.++ .+.++|....||-||++.. .|-.+.. .|++|||.|+ |++..-.+.+..- ++.
T Consensus 16 ~~FR~gQ~evI~~~l----~g~d~lvvmPTGgGKSlCy--QiPAll~----~G~TLVVSPLiSLM~DQV~~l~~~--Gi~ 83 (590)
T COG0514 16 ASFRPGQQEIIDALL----SGKDTLVVMPTGGGKSLCY--QIPALLL----EGLTLVVSPLISLMKDQVDQLEAA--GIR 83 (590)
T ss_pred cccCCCHHHHHHHHH----cCCcEEEEccCCCCcchHh--hhHHHhc----CCCEEEECchHHHHHHHHHHHHHc--Cce
Confidence 467888999999998 6799999999999999752 2322322 5799999997 7777777887765 466
Q ss_pred EEEEEcCchh--HHHHHHHhhhccccCCCCccccEEEecHHHHHhh--HhhhhccCcceEecchhcccCCc-------ch
Q 000684 254 VIVYVGTRAS--REVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKD--KAVLSKIKWNYLMVDEAHRLKNS-------EA 322 (1352)
Q Consensus 254 vvvy~G~~~~--r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d--~~~L~~i~w~~lIVDEAHrlKN~-------~S 322 (1352)
+....++-.. +..+... -.....+++..++|.+... .+.|...+..+++|||||-+... ..
T Consensus 84 A~~lnS~l~~~e~~~v~~~--------l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~ 155 (590)
T COG0514 84 AAYLNSTLSREERQQVLNQ--------LKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYR 155 (590)
T ss_pred eehhhcccCHHHHHHHHHH--------HhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHH
Confidence 6666555332 2222111 1233688999999999865 45677889999999999998543 34
Q ss_pred HHHHHHHcccccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhHh
Q 000684 323 QLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIKD 402 (1352)
Q Consensus 323 kl~~aL~~l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~d 402 (1352)
.+......|...-++.||||--.--..++...|..-.+..|... |
T Consensus 156 ~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~s------f----------------------------- 200 (590)
T COG0514 156 RLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGS------F----------------------------- 200 (590)
T ss_pred HHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEec------C-----------------------------
Confidence 55555666666678999888644444444444433332221100 0
Q ss_pred hhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCch
Q 000684 403 VEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDT 482 (1352)
Q Consensus 403 v~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~ 482 (1352)
+. -|+..+++..
T Consensus 201 ------------------------------------------dR---pNi~~~v~~~----------------------- 212 (590)
T COG0514 201 ------------------------------------------DR---PNLALKVVEK----------------------- 212 (590)
T ss_pred ------------------------------------------CC---chhhhhhhhc-----------------------
Confidence 00 0010000000
Q ss_pred hhHHHHhhhcchhHHHHHHHH-HhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCC
Q 000684 483 SKLERIILSSGKLVILDKLLV-RLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSE 561 (1352)
Q Consensus 483 ~~l~~li~~SgKl~~L~kLL~-~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~ 561 (1352)
.+++..++ .|. .....+...||||......+.|+..|...|++...+||+++.++|+..-++|..++
T Consensus 213 --------~~~~~q~~--fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~-- 280 (590)
T COG0514 213 --------GEPSDQLA--FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDE-- 280 (590)
T ss_pred --------ccHHHHHH--HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCC--
Confidence 01111111 111 12334455799999999999999999999999999999999999999999999743
Q ss_pred CcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCC
Q 000684 562 DFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSK 621 (1352)
Q Consensus 562 ~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~ 621 (1352)
..++++|.|.|.|||=++...||+||.+-+...|.|-+|||+|-|....+ +-|....
T Consensus 281 -~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~a--ill~~~~ 337 (590)
T COG0514 281 -IKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEA--ILLYSPE 337 (590)
T ss_pred -CcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceE--EEeeccc
Confidence 45899999999999999999999999999999999999999999998776 4455544
No 73
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=5.1e-16 Score=192.41 Aligned_cols=130 Identities=18% Similarity=0.257 Sum_probs=106.8
Q ss_pred hcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecC
Q 000684 491 SSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTR 570 (1352)
Q Consensus 491 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTr 570 (1352)
...|...|.+++..+...+..|||||+.....+.|...|...|+++..|+|... +|+..+..|..... .++|+|+
T Consensus 455 ~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g---~VlVATd 529 (656)
T PRK12898 455 AAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRG---RITVATN 529 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCC---cEEEEcc
Confidence 456888999999888777889999999999999999999999999999999865 56666666654222 4899999
Q ss_pred CCccCCCCC---ccC-----EEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCCCHHHHHHHH
Q 000684 571 AGGLGINLA---TAD-----TVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILER 630 (1352)
Q Consensus 571 Agg~GINL~---~Ad-----tVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~TiEE~Il~r 630 (1352)
.+|+|+|+. .+. +||.||.+-|...|.|++||++|.|....+. .|++ .|+.++.+
T Consensus 530 mAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~--~~is---~eD~l~~~ 592 (656)
T PRK12898 530 MAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYE--AILS---LEDDLLQS 592 (656)
T ss_pred chhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEE--EEec---hhHHHHHh
Confidence 999999998 343 8999999999999999999999999876553 3343 45666654
No 74
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.72 E-value=4.1e-16 Score=179.67 Aligned_cols=321 Identities=22% Similarity=0.328 Sum_probs=213.8
Q ss_pred CCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHH-HHHHHHHh---cCCCCcE-EEEEChhhH-HHHHHHHHHHc
Q 000684 176 KLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVS-MLGFLQNA---QQIPGPF-LVVVPLSTL-SNWAKEFRKWL 249 (1352)
Q Consensus 176 ~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa-~l~~L~~~---~~~~gp~-LIVvP~s~L-~nW~~Ef~kw~ 249 (1352)
+..|.|-++|--.+ .+..+|-..-+|+|||...|. .+.++... ....||+ ||+||+.-+ .|...|.++|+
T Consensus 245 kptpiq~qalptal----sgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~ 320 (731)
T KOG0339|consen 245 KPTPIQCQALPTAL----SGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFG 320 (731)
T ss_pred cCCccccccccccc----ccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhh
Confidence 45555655555444 567788888899999976442 33344332 2346786 678898555 88889999986
Q ss_pred C--CCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhH--hhhhccCcceEecchhcccCCc--chH
Q 000684 250 P--TMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDK--AVLSKIKWNYLMVDEAHRLKNS--EAQ 323 (1352)
Q Consensus 250 p--~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~--~~L~~i~w~~lIVDEAHrlKN~--~Sk 323 (1352)
. ++++++.+|...--+.+..+. ....+||+|++.++.-. ....-.+..|||+|||.||-.. ..+
T Consensus 321 K~ygl~~v~~ygGgsk~eQ~k~Lk----------~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~q 390 (731)
T KOG0339|consen 321 KAYGLRVVAVYGGGSKWEQSKELK----------EGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQ 390 (731)
T ss_pred hhccceEEEeecCCcHHHHHHhhh----------cCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHH
Confidence 4 578887777766555544331 46889999999887532 2233346789999999999543 344
Q ss_pred HHHHHHcccccCe-EEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhHh
Q 000684 324 LYTTLSEFSTKNK-LLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIKD 402 (1352)
Q Consensus 324 l~~aL~~l~~~~r-lLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~d 402 (1352)
...+...++..+. |+.++|- . ..+..| ..+
T Consensus 391 VrSI~~hirpdrQtllFsaTf--------------------------~-----------~kIe~l------------ard 421 (731)
T KOG0339|consen 391 VRSIKQHIRPDRQTLLFSATF--------------------------K-----------KKIEKL------------ARD 421 (731)
T ss_pred HHHHHhhcCCcceEEEeeccc--------------------------h-----------HHHHHH------------HHH
Confidence 4444455555554 5556652 0 111111 111
Q ss_pred hhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCch
Q 000684 403 VEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDT 482 (1352)
Q Consensus 403 v~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~ 482 (1352)
++.+ | .++|..++... +. -+.+.--+|.
T Consensus 422 ~L~d--p--VrvVqg~vgea---------------------n~------dITQ~V~V~~--------------------- 449 (731)
T KOG0339|consen 422 ILSD--P--VRVVQGEVGEA---------------------NE------DITQTVSVCP--------------------- 449 (731)
T ss_pred HhcC--C--eeEEEeehhcc---------------------cc------chhheeeecc---------------------
Confidence 1110 1 11111111000 00 0000000010
Q ss_pred hhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCC
Q 000684 483 SKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSED 562 (1352)
Q Consensus 483 ~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~ 562 (1352)
..-.|+..|.+-|......| +||||..-....+-|...|..+||++..++|++.+++|.+.|..|......
T Consensus 450 -------s~~~Kl~wl~~~L~~f~S~g-kvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~- 520 (731)
T KOG0339|consen 450 -------SEEKKLNWLLRHLVEFSSEG-KVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKP- 520 (731)
T ss_pred -------CcHHHHHHHHHHhhhhccCC-cEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCc-
Confidence 01235555555555555455 799999999999999999999999999999999999999999999985444
Q ss_pred cEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCCCHH
Q 000684 563 FCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVE 624 (1352)
Q Consensus 563 ~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~TiE 624 (1352)
+|+.|++..+|+++....|||+||.--.-..+.|++||.+|.|-+. ..|.|||..-.+
T Consensus 521 --VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kG--vayTlvTeKDa~ 578 (731)
T KOG0339|consen 521 --VLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKG--VAYTLVTEKDAE 578 (731)
T ss_pred --eEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccc--eeeEEechhhHH
Confidence 8999999999999999999999999999999999999999999874 459999976443
No 75
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.72 E-value=6.8e-16 Score=172.28 Aligned_cols=320 Identities=19% Similarity=0.224 Sum_probs=213.2
Q ss_pred CCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHH-HHHHHHHHHHhcCCCCcEEEEEChhhH-HHHHHHHHHHc--CC
Q 000684 176 KLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQ-SVSMLGFLQNAQQIPGPFLVVVPLSTL-SNWAKEFRKWL--PT 251 (1352)
Q Consensus 176 ~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlq-aIa~l~~L~~~~~~~gp~LIVvP~s~L-~nW~~Ef~kw~--p~ 251 (1352)
+..|.|...+-.++ .|.+||-+.-+|+|||.. ++-.+..|... +..--.||++|+.-+ .|-.+.|.... -+
T Consensus 29 ~pTpiQ~~cIpkIL----eGrdcig~AkTGsGKT~AFaLPil~rLsed-P~giFalvlTPTrELA~QiaEQF~alGk~l~ 103 (442)
T KOG0340|consen 29 KPTPIQQACIPKIL----EGRDCIGCAKTGSGKTAAFALPILNRLSED-PYGIFALVLTPTRELALQIAEQFIALGKLLN 103 (442)
T ss_pred CCCchHhhhhHHHh----cccccccccccCCCcchhhhHHHHHhhccC-CCcceEEEecchHHHHHHHHHHHHHhccccc
Confidence 67788999998887 799999999999999986 55566555442 222235999999877 56656665443 24
Q ss_pred CeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhH------hhhhccCcceEecchhcccCCcchHHH
Q 000684 252 MNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDK------AVLSKIKWNYLMVDEAHRLKNSEAQLY 325 (1352)
Q Consensus 252 l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~------~~L~~i~w~~lIVDEAHrlKN~~Skl~ 325 (1352)
+++.+++|..+--. +- ..-..+.|||++|++.+.... ..+..-+..++|+|||.++.+.. ..
T Consensus 104 lK~~vivGG~d~i~---qa-------~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~--f~ 171 (442)
T KOG0340|consen 104 LKVSVIVGGTDMIM---QA-------AILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGC--FP 171 (442)
T ss_pred ceEEEEEccHHHhh---hh-------hhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccc--hh
Confidence 67777777654322 11 112347899999999875321 11222245789999999996542 11
Q ss_pred HHHH----ccccc-CeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhh
Q 000684 326 TTLS----EFSTK-NKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRII 400 (1352)
Q Consensus 326 ~aL~----~l~~~-~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k 400 (1352)
..|. -+... -.+|+|+|- .+++.+|+..
T Consensus 172 d~L~~i~e~lP~~RQtLlfSATi-td~i~ql~~~---------------------------------------------- 204 (442)
T KOG0340|consen 172 DILEGIEECLPKPRQTLLFSATI-TDTIKQLFGC---------------------------------------------- 204 (442)
T ss_pred hHHhhhhccCCCccceEEEEeeh-hhHHHHhhcC----------------------------------------------
Confidence 2222 12222 336666652 1222211100
Q ss_pred HhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCC
Q 000684 401 KDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSIN 480 (1352)
Q Consensus 401 ~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~ 480 (1352)
|-.. +.+|.....+.. ... .
T Consensus 205 -------~i~k-------------------------------------------------~~a~~~e~~~~v-stv---e 224 (442)
T KOG0340|consen 205 -------PITK-------------------------------------------------SIAFELEVIDGV-STV---E 224 (442)
T ss_pred -------Cccc-------------------------------------------------ccceEEeccCCC-Cch---h
Confidence 0000 000000000000 000 0
Q ss_pred chhhHHHHhhhcchhHHHHHHHHHhhh-cCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCC
Q 000684 481 DTSKLERIILSSGKLVILDKLLVRLHE-TKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPG 559 (1352)
Q Consensus 481 ~~~~l~~li~~SgKl~~L~kLL~~l~~-~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~ 559 (1352)
.-..-..++...+|-..|..+|....+ ....++||.|-++...+|...|...++....+|+-+++.+|-.++.+|.+
T Consensus 225 tL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs-- 302 (442)
T KOG0340|consen 225 TLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRS-- 302 (442)
T ss_pred hhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhh--
Confidence 000001123345678889999998887 56789999999999999999999999999999999999999999999997
Q ss_pred CCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCCCHH
Q 000684 560 SEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVE 624 (1352)
Q Consensus 560 s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~TiE 624 (1352)
+..-+||+|+++++|+|+++.+.||+||.+-.|..|++|.||..|.|....- .-+|+..-||
T Consensus 303 -~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~a--iSivt~rDv~ 364 (442)
T KOG0340|consen 303 -NAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMA--ISIVTQRDVE 364 (442)
T ss_pred -cCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcce--EEEechhhHH
Confidence 4445899999999999999999999999999999999999999999987443 4455655444
No 76
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.71 E-value=2.1e-16 Score=196.64 Aligned_cols=118 Identities=16% Similarity=0.154 Sum_probs=106.1
Q ss_pred cchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCC
Q 000684 492 SGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRA 571 (1352)
Q Consensus 492 SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrA 571 (1352)
..|...+.+.+..+.+.|..|||||......+.|..+|...|+++..|+|. +.+|+..|..|.. ....++|+|+.
T Consensus 388 ~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag---~~g~VtIATnm 462 (745)
T TIGR00963 388 EEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAG---RKGAVTIATNM 462 (745)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcC---CCceEEEEecc
Confidence 458888888888888999999999999999999999999999999999998 7789999999976 33469999999
Q ss_pred CccCCCCCc-------cCEEEEcCCCCChhhHHHHhhhhcccCCCceEEE
Q 000684 572 GGLGINLAT-------ADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNI 614 (1352)
Q Consensus 572 gg~GINL~~-------AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~V 614 (1352)
+|+|+|+.. .-+||.++.+-|+..|.|+.||++|.|+......
T Consensus 463 AgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~ 512 (745)
T TIGR00963 463 AGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 512 (745)
T ss_pred ccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEE
Confidence 999999987 6699999999999999999999999999866543
No 77
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.71 E-value=3.9e-16 Score=180.32 Aligned_cols=327 Identities=17% Similarity=0.261 Sum_probs=217.2
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHH-HHHHHHHHHHhcCC--CCcEEEEEChhhH----HHHHHHHHH
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQ-SVSMLGFLQNAQQI--PGPFLVVVPLSTL----SNWAKEFRK 247 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlq-aIa~l~~L~~~~~~--~gp~LIVvP~s~L----~nW~~Ef~k 247 (1352)
..+.|.|...+--.+ -|...+-+..+|+|||.. +|.+|..|...... ...+||+||+.-| .+..+.+..
T Consensus 202 ~~PTpIQ~a~IPval----lgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaq 277 (691)
T KOG0338|consen 202 KKPTPIQVATIPVAL----LGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQ 277 (691)
T ss_pred CCCCchhhhcccHHh----hcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHh
Confidence 367778888876444 467778888999999987 56667666654322 2358999998765 455666777
Q ss_pred HcCCCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhh---hhccCcceEecchhcccCCc--ch
Q 000684 248 WLPTMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAV---LSKIKWNYLMVDEAHRLKNS--EA 322 (1352)
Q Consensus 248 w~p~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~---L~~i~w~~lIVDEAHrlKN~--~S 322 (1352)
|+ ++.+....|.-.-+..-..+ ....||||.|+..+...... |.--...++|+|||+|+... ..
T Consensus 278 Ft-~I~~~L~vGGL~lk~QE~~L----------Rs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFad 346 (691)
T KOG0338|consen 278 FT-DITVGLAVGGLDLKAQEAVL----------RSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFAD 346 (691)
T ss_pred hc-cceeeeeecCccHHHHHHHH----------hhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHH
Confidence 76 68888888887766543221 23689999999999875432 33335678999999999543 33
Q ss_pred HHHHHHHcccc-cCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhH
Q 000684 323 QLYTTLSEFST-KNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIK 401 (1352)
Q Consensus 323 kl~~aL~~l~~-~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~ 401 (1352)
++...++.+.. +..+|.|||- ..-+.+|.+|
T Consensus 347 emnEii~lcpk~RQTmLFSATM-teeVkdL~sl----------------------------------------------- 378 (691)
T KOG0338|consen 347 EMNEIIRLCPKNRQTMLFSATM-TEEVKDLASL----------------------------------------------- 378 (691)
T ss_pred HHHHHHHhccccccceeehhhh-HHHHHHHHHh-----------------------------------------------
Confidence 44444443322 2237788874 1122222221
Q ss_pred hhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCc
Q 000684 402 DVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSIND 481 (1352)
Q Consensus 402 dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~ 481 (1352)
+|-... -|+|.-+.. ....|.+-..++|- ..
T Consensus 379 ----SL~kPv--rifvd~~~~----------------------~a~~LtQEFiRIR~-------------~r-------- 409 (691)
T KOG0338|consen 379 ----SLNKPV--RIFVDPNKD----------------------TAPKLTQEFIRIRP-------------KR-------- 409 (691)
T ss_pred ----hcCCCe--EEEeCCccc----------------------cchhhhHHHheecc-------------cc--------
Confidence 111110 111110000 00000000000000 00
Q ss_pred hhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCC
Q 000684 482 TSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSE 561 (1352)
Q Consensus 482 ~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~ 561 (1352)
..-+-.+|..|+.++. ..+++||.+....+..|.-.|-..|+++.-|||+.++.+|..++..|.+..-+
T Consensus 410 ---------e~dRea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eid 478 (691)
T KOG0338|consen 410 ---------EGDREAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEID 478 (691)
T ss_pred ---------ccccHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCC
Confidence 0012234455666555 56899999999999999999999999999999999999999999999985444
Q ss_pred CcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCCCHHHHHHHHH
Q 000684 562 DFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERA 631 (1352)
Q Consensus 562 ~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~TiEE~Il~ra 631 (1352)
|||+|+++++||++...-|||+|+.|-+-..|++|.||..|.|... +-..||..+ |.+|+.-.
T Consensus 479 ---vLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaG--rsVtlvgE~--dRkllK~i 541 (691)
T KOG0338|consen 479 ---VLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAG--RSVTLVGES--DRKLLKEI 541 (691)
T ss_pred ---EEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCc--ceEEEeccc--cHHHHHHH
Confidence 9999999999999999999999999999999999999999999763 224578877 66665443
No 78
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.71 E-value=4.4e-15 Score=189.07 Aligned_cols=364 Identities=16% Similarity=0.121 Sum_probs=201.0
Q ss_pred CCCcHHHHHHHHHHHHHhcC------CCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChh-hHHHHHHHHHH
Q 000684 175 GKLRDYQLEGLNFLVNSWRN------DTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLS-TLSNWAKEFRK 247 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~------~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s-~L~nW~~Ef~k 247 (1352)
...|+||..+|+-++..+.+ ..+|+|.+.+|+|||++++.++..|.... ....+|||||.. +..||.++|..
T Consensus 237 ~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~-~~~~vl~lvdR~~L~~Q~~~~f~~ 315 (667)
T TIGR00348 237 PYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELL-KNPKVFFVVDRRELDYQLMKEFQS 315 (667)
T ss_pred eehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhc-CCCeEEEEECcHHHHHHHHHHHHh
Confidence 45899999999999887654 35899999999999999998888777433 345689999975 55999999999
Q ss_pred HcCCCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhh-HhhhhccC----cceEecchhcccCCcch
Q 000684 248 WLPTMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKD-KAVLSKIK----WNYLMVDEAHRLKNSEA 322 (1352)
Q Consensus 248 w~p~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d-~~~L~~i~----w~~lIVDEAHrlKN~~S 322 (1352)
+.++.. .-.++ ...+... . ......|+|||.+.+... ...+..+. ..+||||||||... .
T Consensus 316 ~~~~~~--~~~~s---~~~L~~~--l------~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~--~ 380 (667)
T TIGR00348 316 LQKDCA--ERIES---IAELKRL--L------EKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY--G 380 (667)
T ss_pred hCCCCC--cccCC---HHHHHHH--H------hCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc--h
Confidence 875311 11111 1111111 0 112467999999999752 22222221 23899999999742 2
Q ss_pred HHHHHHH-cccccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhH
Q 000684 323 QLYTTLS-EFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIK 401 (1352)
Q Consensus 323 kl~~aL~-~l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~ 401 (1352)
.....++ .|....+++|||||+...-..-+. .|...|+.. +..+-+.....
T Consensus 381 ~~~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~--------------~f~~~fg~~--------------i~~Y~~~~AI~ 432 (667)
T TIGR00348 381 ELAKNLKKALKNASFFGFTGTPIFKKDRDTSL--------------TFAYVFGRY--------------LHRYFITDAIR 432 (667)
T ss_pred HHHHHHHhhCCCCcEEEEeCCCcccccccccc--------------cccCCCCCe--------------EEEeeHHHHhh
Confidence 3445553 567788999999997532111000 110001110 00111111111
Q ss_pred hhhccCCCcEEEEEEe--cCCHHHHHHHHHHHHHhHHhhhccccCc-hhhHHHHHHHHHHhcCCccccccccCCCCCCCC
Q 000684 402 DVEKSLPPKIERILRV--EMSPLQKQYYKWILERNFHDLNKGVRGN-QVSLLNIVVELKKCCNHPFLFESADHGYGGDTS 478 (1352)
Q Consensus 402 dv~~~LPpk~e~iv~v--~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~-~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~ 478 (1352)
| ..+-|.....+.+ .++... ....+...+.......... ...+-.....+..
T Consensus 433 d--G~~~~i~Y~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------------------- 487 (667)
T TIGR00348 433 D--GLTVKIDYEDRLPEDHLDRKK---LDAFFDEIFELLPERIREITKESLKEKLQKTKK-------------------- 487 (667)
T ss_pred c--CCeeeEEEEecchhhccChHH---HHHHHHHHHHhhhccccHHHHHHHHHHHHHHHh--------------------
Confidence 1 0011111111111 111111 1111111111100000000 0001111111111
Q ss_pred CCchhhHHHHhhhcchhHHHH-HHHHHh----hhcCCeEEEEecchhHHHHHHHHHHhc-----CCcEEEEeCCCCHH--
Q 000684 479 INDTSKLERIILSSGKLVILD-KLLVRL----HETKHRVLIFSQMVRMLDILAEYMSYK-----GFQFQRLDGSTKAE-- 546 (1352)
Q Consensus 479 ~~~~~~l~~li~~SgKl~~L~-kLL~~l----~~~g~KVLIFSq~~~~ldiL~d~L~~~-----g~~~~rldGs~~~~-- 546 (1352)
++.+...+..+. .++..+ ...+.|.+|||.....+..+.+.|... +...+.++|+....
T Consensus 488 ---------~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~ 558 (667)
T TIGR00348 488 ---------ILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAE 558 (667)
T ss_pred ---------hhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhH
Confidence 111111111111 122221 223578999999988887777666433 34556677764432
Q ss_pred -------------------HHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhccc-
Q 000684 547 -------------------LRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRI- 606 (1352)
Q Consensus 547 -------------------eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRi- 606 (1352)
....++++|.++ +..-+||+++...+|.|.+.++++++.-|--+ ...+||+||+.|+
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~--~~~~ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~~ 635 (667)
T TIGR00348 559 IRDYNKHIRTKFDKSDGFEIYYKDLERFKKE--ENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRID 635 (667)
T ss_pred HHHHHHHhccccccchhhhHHHHHHHHhcCC--CCceEEEEEcccccccCCCccceEEEeccccc-cHHHHHHHHhcccc
Confidence 234789999874 34568889999999999999999999887665 4689999999996
Q ss_pred C-CCceEEEEEEec
Q 000684 607 G-QQEVVNIYRFVT 619 (1352)
Q Consensus 607 G-Qkk~V~VyrLvt 619 (1352)
+ .+....|+.++-
T Consensus 636 ~~~K~~g~IvDy~g 649 (667)
T TIGR00348 636 GKDKTFGLIVDYRG 649 (667)
T ss_pred CCCCCCEEEEECcC
Confidence 4 345567777765
No 79
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.70 E-value=2.4e-16 Score=185.49 Aligned_cols=312 Identities=19% Similarity=0.264 Sum_probs=213.1
Q ss_pred CcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHH-HHHHHHHHHHhcCCCCcEEEEEChhhH-HHHHHHHHHHcC---C
Q 000684 177 LRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQ-SVSMLGFLQNAQQIPGPFLVVVPLSTL-SNWAKEFRKWLP---T 251 (1352)
Q Consensus 177 Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlq-aIa~l~~L~~~~~~~gp~LIVvP~s~L-~nW~~Ef~kw~p---~ 251 (1352)
..+.|..++--.. .+...|+-.-.|+|||+. +++.+..|.. ....--.+||+|+.-+ -|.+..|.+.+| +
T Consensus 48 ptkiQaaAIP~~~----~kmDliVQaKSGTGKTlVfsv~av~sl~~-~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g 122 (980)
T KOG4284|consen 48 PTKIQAAAIPAIF----SKMDLIVQAKSGTGKTLVFSVLAVESLDS-RSSHIQKVIVTPTREIAVQIKETVRKVAPSFTG 122 (980)
T ss_pred CCchhhhhhhhhh----cccceEEEecCCCCceEEEEeeeehhcCc-ccCcceeEEEecchhhhhHHHHHHHHhcccccC
Confidence 4456777776554 567889999999999987 3333333322 2222346999999777 788888888887 5
Q ss_pred CeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHh--hHhhhhccCcceEecchhcccCCcch---HHHH
Q 000684 252 MNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLK--DKAVLSKIKWNYLMVDEAHRLKNSEA---QLYT 326 (1352)
Q Consensus 252 l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~--d~~~L~~i~w~~lIVDEAHrlKN~~S---kl~~ 326 (1352)
+.+.+|.|+..-..-.. +..+.+|+|-|+..+.. +...+..-+.+++|+|||+.|-...| .+..
T Consensus 123 ~~csvfIGGT~~~~d~~-----------rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ 191 (980)
T KOG4284|consen 123 ARCSVFIGGTAHKLDLI-----------RLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINI 191 (980)
T ss_pred cceEEEecCchhhhhhh-----------hhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHH
Confidence 78999998876543222 22367899999998865 44566667889999999999965444 4555
Q ss_pred HHHccccc-CeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhc-chhhhhhhHhhh
Q 000684 327 TLSEFSTK-NKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELR-PHILRRIIKDVE 404 (1352)
Q Consensus 327 aL~~l~~~-~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~-p~~LRR~k~dv~ 404 (1352)
.+..+... ..+..+||=-+ ||.++.+ +.++ |.++|-.-.|+.
T Consensus 192 ii~slP~~rQv~a~SATYp~-nLdn~Ls-----------------------------------k~mrdp~lVr~n~~d~~ 235 (980)
T KOG4284|consen 192 IINSLPQIRQVAAFSATYPR-NLDNLLS-----------------------------------KFMRDPALVRFNADDVQ 235 (980)
T ss_pred HHHhcchhheeeEEeccCch-hHHHHHH-----------------------------------HHhcccceeecccCCce
Confidence 66666544 44667888422 2332211 1111 112221111111
Q ss_pred ccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCchhh
Q 000684 405 KSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDTSK 484 (1352)
Q Consensus 405 ~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~~~ 484 (1352)
. +--+ +||. +.|.|- +.
T Consensus 236 L-~Gik--------------Qyv~------------------------------~~~s~n---------------ns--- 252 (980)
T KOG4284|consen 236 L-FGIK--------------QYVV------------------------------AKCSPN---------------NS--- 252 (980)
T ss_pred e-echh--------------heee------------------------------eccCCc---------------ch---
Confidence 0 0000 0100 000000 00
Q ss_pred HHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcE
Q 000684 485 LERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFC 564 (1352)
Q Consensus 485 l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~v 564 (1352)
.+. ---|+..|..++..+.- ...||||....-++-|+++|...|+.+..|.|.|++.+|..+++.+.+ -...
T Consensus 253 vee---mrlklq~L~~vf~~ipy--~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~---f~~r 324 (980)
T KOG4284|consen 253 VEE---MRLKLQKLTHVFKSIPY--VQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRA---FRVR 324 (980)
T ss_pred HHH---HHHHHHHHHHHHhhCch--HHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhh---ceEE
Confidence 000 11256666666666532 247999999999999999999999999999999999999999999887 4456
Q ss_pred EEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCce
Q 000684 565 FLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEV 611 (1352)
Q Consensus 565 fLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~ 611 (1352)
+|+||+..++|||-..++.||.+|++-+...|.+|||||+|.|...-
T Consensus 325 ILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~ 371 (980)
T KOG4284|consen 325 ILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGA 371 (980)
T ss_pred EEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccce
Confidence 89999999999999999999999999999999999999999997653
No 80
>PRK09401 reverse gyrase; Reviewed
Probab=99.70 E-value=1.7e-15 Score=200.66 Aligned_cols=296 Identities=17% Similarity=0.187 Sum_probs=187.3
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhH-HHHHHHHHHHcCC-
Q 000684 174 GGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTL-SNWAKEFRKWLPT- 251 (1352)
Q Consensus 174 ~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L-~nW~~Ef~kw~p~- 251 (1352)
|..++++|..++..++ .|.++++...||+|||..++..+.++.. ..+.+|||||+..| .|+...|..++..
T Consensus 78 G~~pt~iQ~~~i~~il----~g~dv~i~ApTGsGKT~f~l~~~~~l~~---~g~~alIL~PTreLa~Qi~~~l~~l~~~~ 150 (1176)
T PRK09401 78 GSKPWSLQRTWAKRLL----LGESFAIIAPTGVGKTTFGLVMSLYLAK---KGKKSYIIFPTRLLVEQVVEKLEKFGEKV 150 (1176)
T ss_pred CCCCcHHHHHHHHHHH----CCCcEEEEcCCCCCHHHHHHHHHHHHHh---cCCeEEEEeccHHHHHHHHHHHHHHhhhc
Confidence 5689999999887776 7899999999999999654444433332 24568999999655 9999999998754
Q ss_pred -CeEEEEEcCch--hHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCCcc-------
Q 000684 252 -MNVIVYVGTRA--SREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSE------- 321 (1352)
Q Consensus 252 -l~vvvy~G~~~--~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN~~------- 321 (1352)
+.+.+..|... ..+.....+-. ....++|+|+|++.+.+....+....+++|||||||++-...
T Consensus 151 ~~~~~~~~g~~~~~~~ek~~~~~~l------~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k~id~~l 224 (1176)
T PRK09401 151 GCGVKILYYHSSLKKKEKEEFLERL------KEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSSKNIDKLL 224 (1176)
T ss_pred CceEEEEEccCCcchhHHHHHHHHH------hcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhcccchhhHH
Confidence 34433333321 11111111100 123589999999999887766666679999999999974311
Q ss_pred -------hHHHHHHHccc-------------------------ccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHH
Q 000684 322 -------AQLYTTLSEFS-------------------------TKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDF 369 (1352)
Q Consensus 322 -------Skl~~aL~~l~-------------------------~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F 369 (1352)
..+..++..++ ....++.|||.-...+...
T Consensus 225 ~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~------------------ 286 (1176)
T PRK09401 225 YLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVK------------------ 286 (1176)
T ss_pred HhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHH------------------
Confidence 12222222222 1223555666532111100
Q ss_pred HHHhcccccccHHHHHHHHHhhcchhhhhhhHhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhH
Q 000684 370 IQNYKNLSSFNENELANLHMELRPHILRRIIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSL 449 (1352)
Q Consensus 370 ~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~l 449 (1352)
+++ +. + .+.+. . ...
T Consensus 287 -------------------------l~~----~l---l------~~~v~-----------------------~--~~~-- 301 (1176)
T PRK09401 287 -------------------------LFR----EL---L------GFEVG-----------------------S--PVF-- 301 (1176)
T ss_pred -------------------------Hhh----cc---c------eEEec-----------------------C--ccc--
Confidence 000 00 0 00000 0 000
Q ss_pred HHHHHHHHHhcCCccccccccCCCCCCCCCCchhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhH---HHHHH
Q 000684 450 LNIVVELKKCCNHPFLFESADHGYGGDTSINDTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRM---LDILA 526 (1352)
Q Consensus 450 lnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~---ldiL~ 526 (1352)
.++.+ .|-|.. ...|...|.+++..+ +..+|||++.... ++.|.
T Consensus 302 -----~~rnI-~~~yi~------------------------~~~k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~ 348 (1176)
T PRK09401 302 -----YLRNI-VDSYIV------------------------DEDSVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELA 348 (1176)
T ss_pred -----ccCCc-eEEEEE------------------------cccHHHHHHHHHHhc---CCCEEEEEecccChHHHHHHH
Confidence 00000 000100 013455566666554 4579999998776 99999
Q ss_pred HHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEee----cCCCccCCCCCc-cCEEEEcCCCC------Chhh
Q 000684 527 EYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLS----TRAGGLGINLAT-ADTVIIFDSDW------NPQN 595 (1352)
Q Consensus 527 d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLS----TrAgg~GINL~~-AdtVIi~DsdW------NP~~ 595 (1352)
++|...|+++..++|++ ...+++|.++.. -+|++ |.++++|||++. ..+||+||.|- ....
T Consensus 349 ~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~---~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~ 420 (1176)
T PRK09401 349 EYLEDLGINAELAISGF-----ERKFEKFEEGEV---DVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELA 420 (1176)
T ss_pred HHHHHCCCcEEEEeCcH-----HHHHHHHHCCCC---CEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEecccccc
Confidence 99999999999999999 235699998543 37777 689999999998 89999999987 5667
Q ss_pred HHHHhhhhccc
Q 000684 596 DLQAMSRAHRI 606 (1352)
Q Consensus 596 dlQAigRahRi 606 (1352)
+.++++|.-.+
T Consensus 421 ~~~~~~r~~~~ 431 (1176)
T PRK09401 421 PPFLLLRLLSL 431 (1176)
T ss_pred CHHHHHHHHhh
Confidence 78888888644
No 81
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.69 E-value=3.2e-15 Score=198.72 Aligned_cols=96 Identities=19% Similarity=0.262 Sum_probs=84.5
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhcC---------------------------------CcEEEEeCCCCHHHHHHHHHH
Q 000684 508 TKHRVLIFSQMVRMLDILAEYMSYKG---------------------------------FQFQRLDGSTKAELRHQAMDH 554 (1352)
Q Consensus 508 ~g~KVLIFSq~~~~ldiL~d~L~~~g---------------------------------~~~~rldGs~~~~eR~~~Id~ 554 (1352)
.+.++|||++..+..+.|...|.... +....+||+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 46789999999999999998886431 114567899999999999999
Q ss_pred hcCCCCCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhccc
Q 000684 555 FNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRI 606 (1352)
Q Consensus 555 Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRi 606 (1352)
|.++ ...+|++|.+.++|||+..+|.||.|+++.+...++|++||++|.
T Consensus 323 fK~G---~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LKSG---ELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHhC---CceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 9984 346899999999999999999999999999999999999999986
No 82
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.67 E-value=1.3e-14 Score=176.16 Aligned_cols=315 Identities=19% Similarity=0.293 Sum_probs=203.3
Q ss_pred CCCcHHHHHHHHHHHHHhcCCC--cEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhH-HHHHHHHHHHcC-
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDT--NVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTL-SNWAKEFRKWLP- 250 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~--~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L-~nW~~Ef~kw~p- 250 (1352)
.+|...|..+++-+..-..... +-+|--++|+|||+.|+..+......+ .-....||+++| .|-...|.+|++
T Consensus 261 F~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G---~Q~ALMAPTEILA~QH~~~~~~~l~~ 337 (677)
T COG1200 261 FKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG---YQAALMAPTEILAEQHYESLRKWLEP 337 (677)
T ss_pred CCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC---CeeEEeccHHHHHHHHHHHHHHHhhh
Confidence 5899999999998875544433 458888999999998765544444432 346899999999 788889999997
Q ss_pred -CCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCCcchHHHHHHH
Q 000684 251 -TMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLS 329 (1352)
Q Consensus 251 -~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN~~Skl~~aL~ 329 (1352)
++.|....|+-.........+-. .....++||-|+..+.....+ .+..++||||=||+.-. ....|+
T Consensus 338 ~~i~V~lLtG~~kgk~r~~~l~~l------~~G~~~ivVGTHALiQd~V~F---~~LgLVIiDEQHRFGV~---QR~~L~ 405 (677)
T COG1200 338 LGIRVALLTGSLKGKARKEILEQL------ASGEIDIVVGTHALIQDKVEF---HNLGLVIIDEQHRFGVH---QRLALR 405 (677)
T ss_pred cCCeEEEeecccchhHHHHHHHHH------hCCCCCEEEEcchhhhcceee---cceeEEEEeccccccHH---HHHHHH
Confidence 47778888886655433222211 344689999999987655443 35689999999999432 233343
Q ss_pred cc-c-ccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhHhhhccC
Q 000684 330 EF-S-TKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIKDVEKSL 407 (1352)
Q Consensus 330 ~l-~-~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~dv~~~L 407 (1352)
.- . ..+.|.||||||+..+. ...|.++.. .+...|
T Consensus 406 ~KG~~~Ph~LvMTATPIPRTLA--------------------lt~fgDldv-----------------------S~IdEl 442 (677)
T COG1200 406 EKGEQNPHVLVMTATPIPRTLA--------------------LTAFGDLDV-----------------------SIIDEL 442 (677)
T ss_pred HhCCCCCcEEEEeCCCchHHHH--------------------HHHhccccc-----------------------hhhccC
Confidence 33 3 57999999999987654 112332211 123357
Q ss_pred CCcEEEEEEecCCHHH-HHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCchhhHH
Q 000684 408 PPKIERILRVEMSPLQ-KQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDTSKLE 486 (1352)
Q Consensus 408 Ppk~e~iv~v~Ls~~Q-k~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~~~l~ 486 (1352)
|+..--|...-+...+ .++|..|... +.+| . |+ |.+ .
T Consensus 443 P~GRkpI~T~~i~~~~~~~v~e~i~~e----i~~G---r------------Qa----Y~V-------------------c 480 (677)
T COG1200 443 PPGRKPITTVVIPHERRPEVYERIREE----IAKG---R------------QA----YVV-------------------C 480 (677)
T ss_pred CCCCCceEEEEeccccHHHHHHHHHHH----HHcC---C------------EE----EEE-------------------e
Confidence 7763333332222222 2333322211 1111 0 00 110 1
Q ss_pred HHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEE
Q 000684 487 RIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFL 566 (1352)
Q Consensus 487 ~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfL 566 (1352)
.+|..|.|+.+- . -..+...|..++ .++....+||.|+.+++++++.+|+++..+ +|
T Consensus 481 PLIeESE~l~l~-~-----------------a~~~~~~L~~~~--~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~---IL 537 (677)
T COG1200 481 PLIEESEKLELQ-A-----------------AEELYEELKSFL--PELKVGLVHGRMKPAEKDAVMEAFKEGEID---IL 537 (677)
T ss_pred ccccccccchhh-h-----------------HHHHHHHHHHHc--ccceeEEEecCCChHHHHHHHHHHHcCCCc---EE
Confidence 122233333210 0 011222333222 367889999999999999999999985444 89
Q ss_pred eecCCCccCCCCCccCEEEEcCCC-CChhhHHHHhhhhcccCCCceE
Q 000684 567 LSTRAGGLGINLATADTVIIFDSD-WNPQNDLQAMSRAHRIGQQEVV 612 (1352)
Q Consensus 567 LSTrAgg~GINL~~AdtVIi~Dsd-WNP~~dlQAigRahRiGQkk~V 612 (1352)
+||.+..+|||+++|+.+||.|.+ +--...-|--||++|=+...-|
T Consensus 538 VaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC 584 (677)
T COG1200 538 VATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYC 584 (677)
T ss_pred EEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEE
Confidence 999999999999999999999987 6778888999999996655444
No 83
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.67 E-value=2e-14 Score=170.83 Aligned_cols=85 Identities=22% Similarity=0.330 Sum_probs=71.9
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhcC--CcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEEE
Q 000684 508 TKHRVLIFSQMVRMLDILAEYMSYKG--FQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVI 585 (1352)
Q Consensus 508 ~g~KVLIFSq~~~~ldiL~d~L~~~g--~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVI 585 (1352)
.+.++|||++....++.+...|...| +.+..++|.++..+|.++. ...+|++|++.++|||+.. +.||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~---------~~~iLVaTdv~~rGiDi~~-~~vi 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM---------QFDILLGTSTVDVGVDFKR-DWLI 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc---------cCCEEEEecHHhcccCCCC-ceEE
Confidence 57799999999999999999998764 6788999999999987653 2358999999999999975 4666
Q ss_pred EcCCCCChhhHHHHhhhhc
Q 000684 586 IFDSDWNPQNDLQAMSRAH 604 (1352)
Q Consensus 586 i~DsdWNP~~dlQAigRah 604 (1352)
++ +-++..++||+||++
T Consensus 341 -~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -EC-CCCHHHHhhhcccCC
Confidence 56 568899999999975
No 84
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.66 E-value=2.1e-14 Score=180.76 Aligned_cols=334 Identities=22% Similarity=0.192 Sum_probs=223.4
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHH-HHHHHHHHhc-CCC---CcEEEEEChhhHHH-HHHHHHHH
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSV-SMLGFLQNAQ-QIP---GPFLVVVPLSTLSN-WAKEFRKW 248 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaI-a~l~~L~~~~-~~~---gp~LIVvP~s~L~n-W~~Ef~kw 248 (1352)
.+|+|.|..++.-+. .|.|+++...||+|||..|+ ..+..|.... +.. --+|.|.|+..|.+ -.+.+..|
T Consensus 21 ~~~t~~Q~~a~~~i~----~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~ 96 (814)
T COG1201 21 TSLTPPQRYAIPEIH----SGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEP 96 (814)
T ss_pred CCCCHHHHHHHHHHh----CCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHH
Confidence 579999999998876 89999999999999999975 4566666552 111 13799999987744 55566666
Q ss_pred c--CCCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhh------HhhhhccCcceEecchhcccCCc
Q 000684 249 L--PTMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKD------KAVLSKIKWNYLMVDEAHRLKNS 320 (1352)
Q Consensus 249 ~--p~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d------~~~L~~i~w~~lIVDEAHrlKN~ 320 (1352)
. -++.+-+-+|+...-...++ .....||+|||+|++.-. ...|. +..+|||||.|.+.+.
T Consensus 97 ~~~~G~~v~vRhGDT~~~er~r~----------~~~PPdILiTTPEsL~lll~~~~~r~~l~--~vr~VIVDEiHel~~s 164 (814)
T COG1201 97 LRELGIEVAVRHGDTPQSEKQKM----------LKNPPHILITTPESLAILLNSPKFRELLR--DVRYVIVDEIHALAES 164 (814)
T ss_pred HHHcCCccceecCCCChHHhhhc----------cCCCCcEEEeChhHHHHHhcCHHHHHHhc--CCcEEEeehhhhhhcc
Confidence 4 25777888888766543322 334689999999987532 23343 4577999999999764
Q ss_pred --chHHHHHHHcc---c-ccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcch
Q 000684 321 --EAQLYTTLSEF---S-TKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPH 394 (1352)
Q Consensus 321 --~Skl~~aL~~l---~-~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~ 394 (1352)
.++++-.|..+ . .-.|++||||-- ++.++ ..||.+.-.. ..
T Consensus 165 KRG~~Lsl~LeRL~~l~~~~qRIGLSATV~--~~~~v---arfL~g~~~~---------~~------------------- 211 (814)
T COG1201 165 KRGVQLALSLERLRELAGDFQRIGLSATVG--PPEEV---AKFLVGFGDP---------CE------------------- 211 (814)
T ss_pred ccchhhhhhHHHHHhhCcccEEEeehhccC--CHHHH---HHHhcCCCCc---------eE-------------------
Confidence 45565555544 3 345799999942 33333 3333322100 00
Q ss_pred hhhhhhHhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCC
Q 000684 395 ILRRIIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYG 474 (1352)
Q Consensus 395 ~LRR~k~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~ 474 (1352)
-|......+.++-|.++- +.+...
T Consensus 212 -------Iv~~~~~k~~~i~v~~p~-------------------------------------------~~~~~~------ 235 (814)
T COG1201 212 -------IVDVSAAKKLEIKVISPV-------------------------------------------EDLIYD------ 235 (814)
T ss_pred -------EEEcccCCcceEEEEecC-------------------------------------------Cccccc------
Confidence 000000111111111100 000000
Q ss_pred CCCCCCchhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcC-CcEEEEeCCCCHHHHHHHHH
Q 000684 475 GDTSINDTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKG-FQFQRLDGSTKAELRHQAMD 553 (1352)
Q Consensus 475 ~~~~~~~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g-~~~~rldGs~~~~eR~~~Id 553 (1352)
..=...+.+.|..+.++...+|||++...+.+.|...|...+ ..+..-|||++.++|..+-+
T Consensus 236 -----------------~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~ 298 (814)
T COG1201 236 -----------------EELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEE 298 (814)
T ss_pred -----------------cchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHH
Confidence 000111223444445556689999999999999999999887 88899999999999999999
Q ss_pred HhcCCCCCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhc-ccCCCceEEEEEEecCCCHHHHHHHHHH
Q 000684 554 HFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAH-RIGQQEVVNIYRFVTSKSVEEDILERAK 632 (1352)
Q Consensus 554 ~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRah-RiGQkk~V~VyrLvt~~TiEE~Il~ra~ 632 (1352)
+|.++. ...++||....+|||+-..|.||.|.+|-.-...+||+||++ |+|. |.-..+++.+ .++.+-..+.
T Consensus 299 ~lk~G~---lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~---~Skg~ii~~~-r~dllE~~vi 371 (814)
T COG1201 299 RLKEGE---LKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGE---VSKGIIIAED-RDDLLECLVL 371 (814)
T ss_pred HHhcCC---ceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCC---cccEEEEecC-HHHHHHHHHH
Confidence 999854 458999999999999999999999999999999999999984 5565 3445566666 5555544444
Q ss_pred HHHhh
Q 000684 633 KKMVL 637 (1352)
Q Consensus 633 ~K~~L 637 (1352)
-+..+
T Consensus 372 ~~~a~ 376 (814)
T COG1201 372 ADLAL 376 (814)
T ss_pred HHHHH
Confidence 44443
No 85
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.65 E-value=8.4e-16 Score=168.87 Aligned_cols=324 Identities=19% Similarity=0.277 Sum_probs=215.0
Q ss_pred CcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHH-HHHHHHHHHHhcCCCCcEEEEEChhhH----HHHHHHHHHHcCC
Q 000684 177 LRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQ-SVSMLGFLQNAQQIPGPFLVVVPLSTL----SNWAKEFRKWLPT 251 (1352)
Q Consensus 177 Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlq-aIa~l~~L~~~~~~~gp~LIVvP~s~L----~nW~~Ef~kw~p~ 251 (1352)
..|.|.+++--.+ .|.+.+.-.--|+|||.. +|..|..+... ...--.+|+||..-+ +|-..++.+.+ +
T Consensus 108 PSPiQeesIPiaL----tGrdiLaRaKNGTGKT~a~~IP~Lekid~~-~~~IQ~~ilVPtrelALQtSqvc~~lskh~-~ 181 (459)
T KOG0326|consen 108 PSPIQEESIPIAL----TGRDILARAKNGTGKTAAYCIPVLEKIDPK-KNVIQAIILVPTRELALQTSQVCKELSKHL-G 181 (459)
T ss_pred CCCccccccceee----cchhhhhhccCCCCCccceechhhhhcCcc-ccceeEEEEeecchhhHHHHHHHHHHhccc-C
Confidence 3344555554443 455555556779999976 44455444322 222246999997544 77888888887 4
Q ss_pred CeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhH--hhhhccCcceEecchhcccCCcch--HHHHH
Q 000684 252 MNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDK--AVLSKIKWNYLMVDEAHRLKNSEA--QLYTT 327 (1352)
Q Consensus 252 l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~--~~L~~i~w~~lIVDEAHrlKN~~S--kl~~a 327 (1352)
+.+.+-.|...-|+.+.. .....+++|.|+..++.-. ..-.--+...+|+|||+.+...+- .+.+.
T Consensus 182 i~vmvttGGT~lrDDI~R----------l~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~l 251 (459)
T KOG0326|consen 182 IKVMVTTGGTSLRDDIMR----------LNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKL 251 (459)
T ss_pred eEEEEecCCcccccceee----------ecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHH
Confidence 888888888777664432 2236899999999887532 222223567899999999965432 23333
Q ss_pred HHcccccC-eEEEecc-CCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhHhhhc
Q 000684 328 LSEFSTKN-KLLITGT-PLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIKDVEK 405 (1352)
Q Consensus 328 L~~l~~~~-rlLLTGT-PlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~dv~~ 405 (1352)
+.-+...+ .+|.||| |+ ....|...| +
T Consensus 252 i~~lP~~rQillySATFP~--------------------tVk~Fm~~~-------------------------l------ 280 (459)
T KOG0326|consen 252 ISFLPKERQILLYSATFPL--------------------TVKGFMDRH-------------------------L------ 280 (459)
T ss_pred HHhCCccceeeEEecccch--------------------hHHHHHHHh-------------------------c------
Confidence 33333332 2444655 11 011121111 1
Q ss_pred cCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCchhhH
Q 000684 406 SLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDTSKL 485 (1352)
Q Consensus 406 ~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~~~l 485 (1352)
..||.+...++-. .......
T Consensus 281 -------------------------------------------------------~kPy~INLM~eLt-----l~GvtQy 300 (459)
T KOG0326|consen 281 -------------------------------------------------------KKPYEINLMEELT-----LKGVTQY 300 (459)
T ss_pred -------------------------------------------------------cCcceeehhhhhh-----hcchhhh
Confidence 1111111111100 0000111
Q ss_pred HHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEE
Q 000684 486 ERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCF 565 (1352)
Q Consensus 486 ~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vf 565 (1352)
-..+..+.|+..|..|+.+|.-+ ..||||+.+.-+++|+.-+...||++..++..|.++.|..+..+|..+. ...
T Consensus 301 YafV~e~qKvhCLntLfskLqIN--QsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~---crn 375 (459)
T KOG0326|consen 301 YAFVEERQKVHCLNTLFSKLQIN--QSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGK---CRN 375 (459)
T ss_pred eeeechhhhhhhHHHHHHHhccc--ceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccc---cce
Confidence 22345677888899999888643 4899999999999999999999999999999999999999999999843 347
Q ss_pred EeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCCCHHHHHHHHHHHHHh
Q 000684 566 LLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMV 636 (1352)
Q Consensus 566 LLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~TiEE~Il~ra~~K~~ 636 (1352)
|++|+..-+|||+++.++||.||.+-|+..|++++||.+|.|--.- ...||+-+ |...+.+.+.+++
T Consensus 376 LVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGl--AInLitye--drf~L~~IE~eLG 442 (459)
T KOG0326|consen 376 LVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGL--AINLITYE--DRFNLYRIEQELG 442 (459)
T ss_pred eeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcce--EEEEEehh--hhhhHHHHHHHhc
Confidence 9999999999999999999999999999999999999999997543 25566533 3445555555554
No 86
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.64 E-value=1.3e-14 Score=169.17 Aligned_cols=362 Identities=19% Similarity=0.289 Sum_probs=216.8
Q ss_pred CCCcHHHHHHH--HHHHHHhcCCCcEEEEcCCCCcHHHH-HHHHHHHHHHhcC-----------CCCc-EEEEEChhhH-
Q 000684 175 GKLRDYQLEGL--NFLVNSWRNDTNVILADEMGLGKTVQ-SVSMLGFLQNAQQ-----------IPGP-FLVVVPLSTL- 238 (1352)
Q Consensus 175 ~~Lr~yQlegv--nwL~~~~~~~~~~ILADEmGLGKTlq-aIa~l~~L~~~~~-----------~~gp-~LIVvP~s~L- 238 (1352)
|..+|.+++++ --.+ .....+|-|.|+|+|||+. .|.++..+.+..+ ...| .|||+|+.-|
T Consensus 200 gFs~Pt~IQsl~lp~ai---~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa 276 (731)
T KOG0347|consen 200 GFSRPTEIQSLVLPAAI---RGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELA 276 (731)
T ss_pred CCCCCccchhhcccHhh---ccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHH
Confidence 34444444443 3333 2336789999999999998 5666663332111 1122 6999999766
Q ss_pred HHHHHHHHHHc--CCCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHh----hHhhhhcc-CcceEec
Q 000684 239 SNWAKEFRKWL--PTMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLK----DKAVLSKI-KWNYLMV 311 (1352)
Q Consensus 239 ~nW~~Ef~kw~--p~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~----d~~~L~~i-~w~~lIV 311 (1352)
.|....|...+ +++.+..+.|+-......+-.. ...+|||+|+..+.. +...|..+ +..+|||
T Consensus 277 ~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~----------~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVl 346 (731)
T KOG0347|consen 277 HQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLN----------QRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVL 346 (731)
T ss_pred HHHHHHHHHhccccCeEEEEeechhHHHHHHHHHh----------cCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEE
Confidence 77777777765 5688888888876655443321 167999999987753 23345555 5789999
Q ss_pred chhcccC--CcchHHHHHHHccc------ccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHH
Q 000684 312 DEAHRLK--NSEAQLYTTLSEFS------TKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENE 383 (1352)
Q Consensus 312 DEAHrlK--N~~Skl~~aL~~l~------~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~ 383 (1352)
|||.||- +.=..+.+.|..+. -+..++.|||-- +..+.. .. ..-..... ....
T Consensus 347 DEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt---------~~~~~~---~~------~~~k~~~k-~~~~ 407 (731)
T KOG0347|consen 347 DEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLT---------LVLQQP---LS------SSRKKKDK-EDEL 407 (731)
T ss_pred ccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEee---------hhhcCh---hH------Hhhhccch-hhhh
Confidence 9999994 33333444444432 112266666631 000000 00 00000000 0000
Q ss_pred HHHHHHhhcchhhhhhhHhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCc
Q 000684 384 LANLHMELRPHILRRIIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHP 463 (1352)
Q Consensus 384 i~~L~~~L~p~~LRR~k~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP 463 (1352)
-+.+.. +.+.+...=+|+ .+.+++.+. ....+.+-+--|+ |
T Consensus 408 ~~kiq~---------Lmk~ig~~~kpk-----iiD~t~q~~------------------------ta~~l~Es~I~C~-~ 448 (731)
T KOG0347|consen 408 NAKIQH---------LMKKIGFRGKPK-----IIDLTPQSA------------------------TASTLTESLIECP-P 448 (731)
T ss_pred hHHHHH---------HHHHhCccCCCe-----eEecCcchh------------------------HHHHHHHHhhcCC-c
Confidence 111111 111111111221 123333221 1112222232331 1
Q ss_pred cccccccCCCCCCCCCCchhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCC
Q 000684 464 FLFESADHGYGGDTSINDTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGST 543 (1352)
Q Consensus 464 ~L~~~~e~~~~~~~~~~~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~ 543 (1352)
+ +..+ .|--+|. .-..|.||||+....+..|.-+|...+++...||.+|
T Consensus 449 -~----eKD~-----------------------ylyYfl~---ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M 497 (731)
T KOG0347|consen 449 -L----EKDL-----------------------YLYYFLT---RYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASM 497 (731)
T ss_pred -c----ccce-----------------------eEEEEEe---ecCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHH
Confidence 0 0000 0000011 1123799999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCC--
Q 000684 544 KAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSK-- 621 (1352)
Q Consensus 544 ~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~-- 621 (1352)
.+.+|-+.+++|....+ ++||+|+++++|||++..++||+|..+-....|++|-||..|.+... |.|. |+...
T Consensus 498 ~QKqRLknLEkF~~~~~---~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~G-vsvm-l~~P~e~ 572 (731)
T KOG0347|consen 498 IQKQRLKNLEKFKQSPS---GVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEG-VSVM-LCGPQEV 572 (731)
T ss_pred HHHHHHHhHHHHhcCCC---eEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCC-eEEE-EeChHHh
Confidence 99999999999998433 59999999999999999999999999999999999999999997543 3322 22222
Q ss_pred -------------------CHHHHHHHHHHHHHhhHHHHHc
Q 000684 622 -------------------SVEEDILERAKKKMVLDHLVIQ 643 (1352)
Q Consensus 622 -------------------TiEE~Il~ra~~K~~L~~~vi~ 643 (1352)
.|++.|+...+....|++.+..
T Consensus 573 ~~~~KL~ktL~k~~dlpifPv~~~~m~~lkeRvrLA~ei~~ 613 (731)
T KOG0347|consen 573 GPLKKLCKTLKKKEDLPIFPVETDIMDALKERVRLAREIDK 613 (731)
T ss_pred HHHHHHHHHHhhccCCCceeccHHHHHHHHHHHHHHHHHHH
Confidence 2466666666666666666544
No 87
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.63 E-value=1.3e-14 Score=162.89 Aligned_cols=328 Identities=22% Similarity=0.298 Sum_probs=204.0
Q ss_pred cccccccCCCccCC------CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHH-HHHHHHHHHhcCCCCcEEEEE
Q 000684 161 SLRKLDEQPEWLRG------GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQS-VSMLGFLQNAQQIPGPFLVVV 233 (1352)
Q Consensus 161 ~~~~~~~~P~~~~~------~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqa-Ia~l~~L~~~~~~~gp~LIVv 233 (1352)
+|..+.-.|..++| ......|..++--|+. ....|.|--...|+|||... +++|+..-- .-...-.|.++
T Consensus 91 sFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~--~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~-~~~~PQ~iCLa 167 (477)
T KOG0332|consen 91 SFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLA--EPPQNLIAQSQSGTGKTAAFVLTMLSRVDP-DVVVPQCICLA 167 (477)
T ss_pred cHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhc--CCchhhhhhhcCCCchhHHHHHHHHHhcCc-cccCCCceeeC
Confidence 56666666766654 2455567777766653 35567788889999999763 333322211 11112257779
Q ss_pred ChhhH-HHHHHHHHHHcC--CCeEE-EEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhhcc---Cc
Q 000684 234 PLSTL-SNWAKEFRKWLP--TMNVI-VYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKI---KW 306 (1352)
Q Consensus 234 P~s~L-~nW~~Ef~kw~p--~l~vv-vy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~i---~w 306 (1352)
|..-+ .|-..-+.+... ++... ++.|++. ..+....-+|+|-|+.+++.....|..+ +.
T Consensus 168 PtrELA~Q~~eVv~eMGKf~~ita~yair~sk~--------------~rG~~i~eqIviGTPGtv~Dlm~klk~id~~ki 233 (477)
T KOG0332|consen 168 PTRELAPQTGEVVEEMGKFTELTASYAIRGSKA--------------KRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKI 233 (477)
T ss_pred chHHHHHHHHHHHHHhcCceeeeEEEEecCccc--------------ccCCcchhheeeCCCccHHHHHHHHHhhChhhc
Confidence 98655 554444444321 22222 2223311 1245567789999999998876665554 56
Q ss_pred ceEecchhcccCCcch---HHHHHHHccc-ccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHH
Q 000684 307 NYLMVDEAHRLKNSEA---QLYTTLSEFS-TKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNEN 382 (1352)
Q Consensus 307 ~~lIVDEAHrlKN~~S---kl~~aL~~l~-~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~ 382 (1352)
.++|+|||..+-+... ......+.+. ....+|.|+|=. .....|...
T Consensus 234 kvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~-------------------e~V~~Fa~k---------- 284 (477)
T KOG0332|consen 234 KVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFV-------------------EKVAAFALK---------- 284 (477)
T ss_pred eEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhH-------------------HHHHHHHHH----------
Confidence 8999999999876542 2223333333 333455666620 001111111
Q ss_pred HHHHHHHhhcchhhhhhhHhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCC
Q 000684 383 ELANLHMELRPHILRRIIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNH 462 (1352)
Q Consensus 383 ~i~~L~~~L~p~~LRR~k~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnH 462 (1352)
-+|.....++.- .... +..+.+|.-.|.|
T Consensus 285 -----------------------ivpn~n~i~Lk~---------------------------eel~-L~~IkQlyv~C~~ 313 (477)
T KOG0332|consen 285 -----------------------IVPNANVIILKR---------------------------EELA-LDNIKQLYVLCAC 313 (477)
T ss_pred -----------------------hcCCCceeeeeh---------------------------hhcc-ccchhhheeeccc
Confidence 122221111110 0000 1111222222221
Q ss_pred ccccccccCCCCCCCCCCchhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCC
Q 000684 463 PFLFESADHGYGGDTSINDTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGS 542 (1352)
Q Consensus 463 P~L~~~~e~~~~~~~~~~~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs 542 (1352)
...|..+|..|.. +..-| ..||||+....+..|...|...|+.+..++|.
T Consensus 314 ----------------------------~~~K~~~l~~lyg-~~tig-qsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~ 363 (477)
T KOG0332|consen 314 ----------------------------RDDKYQALVNLYG-LLTIG-QSIIFCHTKATAMWLYEEMRAEGHQVSLLHGD 363 (477)
T ss_pred ----------------------------hhhHHHHHHHHHh-hhhhh-heEEEEeehhhHHHHHHHHHhcCceeEEeecc
Confidence 1235555555332 22223 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEEEEcCCCC------ChhhHHHHhhhhcccCCCceEEEEE
Q 000684 543 TKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDW------NPQNDLQAMSRAHRIGQQEVVNIYR 616 (1352)
Q Consensus 543 ~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdW------NP~~dlQAigRahRiGQkk~V~Vyr 616 (1352)
++..+|..+|++|..+.+ -+|++|.+..+||+.+..+.||.||.+- .+..|++|+||++|.|.+.-+ +.
T Consensus 364 l~~~~R~~ii~~Fr~g~~---kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a--~n 438 (477)
T KOG0332|consen 364 LTVEQRAAIIDRFREGKE---KVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLA--IN 438 (477)
T ss_pred chhHHHHHHHHHHhcCcc---eEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceE--EE
Confidence 999999999999998544 4999999999999999999999999863 689999999999999987644 44
Q ss_pred EecC
Q 000684 617 FVTS 620 (1352)
Q Consensus 617 Lvt~ 620 (1352)
||-.
T Consensus 439 ~v~~ 442 (477)
T KOG0332|consen 439 LVDD 442 (477)
T ss_pred eecc
Confidence 5553
No 88
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.63 E-value=2.3e-14 Score=190.40 Aligned_cols=280 Identities=14% Similarity=0.205 Sum_probs=177.2
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhH-HHHHHHHHHHcCCC
Q 000684 174 GGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTL-SNWAKEFRKWLPTM 252 (1352)
Q Consensus 174 ~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L-~nW~~Ef~kw~p~l 252 (1352)
+..+.++|..++..++ .|.++++...+|+|||.-++.++.++... ...+|||+|+..| .|+..+|..++..+
T Consensus 76 g~~p~~iQ~~~i~~il----~G~d~vi~ApTGsGKT~f~l~~~~~l~~~---g~~vLIL~PTreLa~Qi~~~l~~l~~~~ 148 (1171)
T TIGR01054 76 GSEPWSIQKMWAKRVL----RGDSFAIIAPTGVGKTTFGLAMSLFLAKK---GKRCYIILPTTLLVIQVAEKISSLAEKA 148 (1171)
T ss_pred CCCCcHHHHHHHHHHh----CCCeEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEeCHHHHHHHHHHHHHHHHHhc
Confidence 4579999999998776 78899999999999998665555444332 3568999999665 88999999987542
Q ss_pred --eE---EEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCCcc------
Q 000684 253 --NV---IVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSE------ 321 (1352)
Q Consensus 253 --~v---vvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN~~------ 321 (1352)
.+ .+|+|...........+.. ....++|+|+|+..+......+.. .+++|||||||++-...
T Consensus 149 ~i~~~~i~~~~Gg~~~~e~~~~~~~l------~~~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEaD~~L~~~k~vd~i 221 (1171)
T TIGR01054 149 GVGTVNIGAYHSRLPTKEKKEFMERI------ENGDFDILITTTMFLSKNYDELGP-KFDFIFVDDVDALLKASKNVDKL 221 (1171)
T ss_pred CCceeeeeeecCCCCHHHHHHHHHHH------hcCCCCEEEECHHHHHHHHHHhcC-CCCEEEEeChHhhhhccccHHHH
Confidence 22 3467765443322211111 123589999999999876665554 79999999999985421
Q ss_pred -------hH-HHHHH----------------------HcccccCe---EEEeccCCCCCHHHHHHHHhhcCCCCCCChhH
Q 000684 322 -------AQ-LYTTL----------------------SEFSTKNK---LLITGTPLQNSVEELWALLHFLDHDKFKSKDD 368 (1352)
Q Consensus 322 -------Sk-l~~aL----------------------~~l~~~~r---lLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~ 368 (1352)
.. +..++ ..+....+ ++.|||+.+......+
T Consensus 222 l~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l---------------- 285 (1171)
T TIGR01054 222 LKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKL---------------- 285 (1171)
T ss_pred HHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHH----------------
Confidence 11 11111 11111111 3358885432211100
Q ss_pred HHHHhcccccccHHHHHHHHHhhcchhhhhhhHhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhh
Q 000684 369 FIQNYKNLSSFNENELANLHMELRPHILRRIIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVS 448 (1352)
Q Consensus 369 F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~ 448 (1352)
|..+ + .+.+. . ....
T Consensus 286 ----~r~l------------------------------l------~~~v~-----------------------~--~~~~ 300 (1171)
T TIGR01054 286 ----FREL------------------------------L------GFEVG-----------------------G--GSDT 300 (1171)
T ss_pred ----cccc------------------------------c------ceEec-----------------------C--cccc
Confidence 0000 0 00000 0 0000
Q ss_pred HHHHHHHHHHhcCCccccccccCCCCCCCCCCchhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecch---hHHHHH
Q 000684 449 LLNIVVELKKCCNHPFLFESADHGYGGDTSINDTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMV---RMLDIL 525 (1352)
Q Consensus 449 llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~---~~ldiL 525 (1352)
++.+ .|.|+. .+.+...|.++|..+ |..+|||++.. ..++.|
T Consensus 301 -------~r~I-~~~~~~------------------------~~~~~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l 345 (1171)
T TIGR01054 301 -------LRNV-VDVYVE------------------------DEDLKETLLEIVKKL---GTGGIVYVSIDYGKEKAEEI 345 (1171)
T ss_pred -------ccce-EEEEEe------------------------cccHHHHHHHHHHHc---CCCEEEEEeccccHHHHHHH
Confidence 0000 011110 001122344555544 56799999988 899999
Q ss_pred HHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEee----cCCCccCCCCCc-cCEEEEcCCC
Q 000684 526 AEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLS----TRAGGLGINLAT-ADTVIIFDSD 590 (1352)
Q Consensus 526 ~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLS----TrAgg~GINL~~-AdtVIi~Dsd 590 (1352)
..+|...|+++..++|+++ +.+++.|.++.. -+|++ |..+++|||++. .++||+||.|
T Consensus 346 ~~~L~~~g~~a~~lhg~~~----~~~l~~Fr~G~~---~vLVata~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 346 AEFLENHGVKAVAYHATKP----KEDYEKFAEGEI---DVLIGVASYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred HHHHHhCCceEEEEeCCCC----HHHHHHHHcCCC---CEEEEeccccCcccccCCCCccccEEEEECCC
Confidence 9999999999999999986 368999998443 37777 588999999998 7999999986
No 89
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.62 E-value=2.1e-15 Score=151.81 Aligned_cols=120 Identities=32% Similarity=0.462 Sum_probs=111.6
Q ss_pred chhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCC
Q 000684 493 GKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAG 572 (1352)
Q Consensus 493 gKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAg 572 (1352)
.|+..+..++....+.+.++|||+.....++.+.++|...+..+..++|+++..+|..+++.|+.+. ..+|++|.++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~---~~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE---IVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC---CcEEEEcChh
Confidence 6888888888888777889999999999999999999988999999999999999999999999854 5689999999
Q ss_pred ccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEE
Q 000684 573 GLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIY 615 (1352)
Q Consensus 573 g~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~Vy 615 (1352)
|+|+|++.+++||+++++|++..+.|++||++|.||+..|.+|
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999998887764
No 90
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.62 E-value=1.1e-14 Score=182.04 Aligned_cols=319 Identities=20% Similarity=0.318 Sum_probs=206.7
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHH-HHHHHHHHHhcC---CCCc-EEEEEChhhH-HHHHHHHHH
Q 000684 174 GGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQS-VSMLGFLQNAQQ---IPGP-FLVVVPLSTL-SNWAKEFRK 247 (1352)
Q Consensus 174 ~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqa-Ia~l~~L~~~~~---~~gp-~LIVvP~s~L-~nW~~Ef~k 247 (1352)
...++|.|-+++-.+. .|..+|....+|+|||+.- +..+.+...... ..|| .|||||+.-+ .|-.+++.+
T Consensus 385 y~k~~~IQ~qAiP~Im----sGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~k 460 (997)
T KOG0334|consen 385 YEKPTPIQAQAIPAIM----SGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRK 460 (997)
T ss_pred CCCCcchhhhhcchhc----cCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHH
Confidence 4588999998887765 7999999999999999875 344444433221 2477 5999998655 555555554
Q ss_pred Hc--CCCeEEEE-EcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHh----hHhhhhc-cCcceEecchhcccCC
Q 000684 248 WL--PTMNVIVY-VGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLK----DKAVLSK-IKWNYLMVDEAHRLKN 319 (1352)
Q Consensus 248 w~--p~l~vvvy-~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~----d~~~L~~-i~w~~lIVDEAHrlKN 319 (1352)
++ -++.+++. .|...++. +... +. ...|+|+|...++. ....+.+ ....+||+|||.|+-.
T Consensus 461 f~k~l~ir~v~vygg~~~~~q-iael---------kR-g~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfd 529 (997)
T KOG0334|consen 461 FLKLLGIRVVCVYGGSGISQQ-IAEL---------KR-GAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFD 529 (997)
T ss_pred HHhhcCceEEEecCCccHHHH-HHHH---------hc-CCceEEeccchhhhhHhhcCCccccccccceeeechhhhhhe
Confidence 43 35555554 44444443 3322 22 36788888876543 2222323 3567999999999831
Q ss_pred --cchHHHHHHHcccccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhh
Q 000684 320 --SEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILR 397 (1352)
Q Consensus 320 --~~Skl~~aL~~l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LR 397 (1352)
..-+.+..|..+ .|.. ...+...--|.++.
T Consensus 530 mgfePq~~~Ii~nl---------------------------rpdr---------------------QtvlfSatfpr~m~ 561 (997)
T KOG0334|consen 530 MGFEPQITRILQNL---------------------------RPDR---------------------QTVLFSATFPRSME 561 (997)
T ss_pred eccCcccchHHhhc---------------------------chhh---------------------hhhhhhhhhhHHHH
Confidence 111111122221 1111 00011111122233
Q ss_pred hhhHhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCC
Q 000684 398 RIIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDT 477 (1352)
Q Consensus 398 R~k~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~ 477 (1352)
-+...|.. + |.. .+| . |+..+.+. +.+.-.+|.
T Consensus 562 ~la~~vl~-~-Pve-iiv--~--------~~svV~k~------------------V~q~v~V~~---------------- 594 (997)
T KOG0334|consen 562 ALARKVLK-K-PVE-IIV--G--------GRSVVCKE------------------VTQVVRVCA---------------- 594 (997)
T ss_pred HHHHHhhc-C-Cee-EEE--c--------cceeEecc------------------ceEEEEEec----------------
Confidence 33333333 2 221 221 0 00000000 000000000
Q ss_pred CCCchhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcC
Q 000684 478 SINDTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNA 557 (1352)
Q Consensus 478 ~~~~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~ 557 (1352)
..+.|+..|..||....+ ..++|||++...-+|.|.+-|...||.++.|||.+++.+|...|..|.+
T Consensus 595 ------------~e~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~ 661 (997)
T KOG0334|consen 595 ------------IENEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKN 661 (997)
T ss_pred ------------CchHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhc
Confidence 135688888999988877 4589999999999999999999999999999999999999999999998
Q ss_pred CCCCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecC
Q 000684 558 PGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTS 620 (1352)
Q Consensus 558 ~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~ 620 (1352)
..+.+|++|.....||+......||+||.+--...+.+|.||++|.|.+. .-|.|++.
T Consensus 662 ---~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 662 ---GVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred ---cCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 44569999999999999999999999999888888999999999999888 44667776
No 91
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=99.61 E-value=5.6e-16 Score=152.93 Aligned_cols=95 Identities=25% Similarity=0.490 Sum_probs=73.6
Q ss_pred hHHHhhHH-HHHHHHHHhhcCCCCCCceEeccccCCCCCCCCCCCCHHHHHHHHHHHhhccC---cchHHhHhhhhcccc
Q 000684 896 NDLINRVE-ELQLLAKRISRYEDPIKQFRVLSYLKPSNWSKGCGWNQFDDARLLLGIHYHGF---GNWENIRLDERLGLT 971 (1352)
Q Consensus 896 e~vl~R~~-~l~lL~~ki~~~~~p~~~~~i~~~~k~~~w~~~~~W~~eeD~~LL~gI~kyGy---G~We~Ir~D~~L~l~ 971 (1352)
+..+.+.. ..++|++||+.|.+|+.++.|+|+ + +++++.||++||+||||++|+||| |+|+.|+++++
T Consensus 12 E~k~~k~~~~~~~l~~Kv~~~~~P~~~L~i~y~---~-~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir---- 83 (118)
T PF09111_consen 12 EKKIEKRKEQQEALRKKVEQYKNPWQELKINYP---P-NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIR---- 83 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-SSHHHH---SST---S-TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCHHHCeeccC---C-CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHH----
Confidence 33555555 569999999999999999999994 3 445799999999999999999999 99999999999
Q ss_pred cccCCcccccccCCC-CChh-hHHHHHHHHHHH
Q 000684 972 KKIAPVELQHHETFL-PRAP-NLKERANALLEM 1002 (1352)
Q Consensus 972 ~ki~~~~~~~~~~~~-p~a~-hL~rR~d~LL~~ 1002 (1352)
..+.|+||||+ ++++ +|+|||++||..
T Consensus 84 ----~~p~FrFDwf~kSRt~~el~rR~~tLi~~ 112 (118)
T PF09111_consen 84 ----ESPLFRFDWFFKSRTPQELQRRCNTLIKL 112 (118)
T ss_dssp ----H-CGGCT-HHHHTS-HHHHHHHHHHHHHH
T ss_pred ----hCCCcccchhcccCCHHHHHHHHHHHHHH
Confidence 77889999974 6655 699999999864
No 92
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.61 E-value=2.8e-13 Score=172.90 Aligned_cols=366 Identities=18% Similarity=0.185 Sum_probs=198.5
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChh-hHHHHHHHHHHHcCCC
Q 000684 174 GGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLS-TLSNWAKEFRKWLPTM 252 (1352)
Q Consensus 174 ~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s-~L~nW~~Ef~kw~p~l 252 (1352)
...|+++|.++++.+...+ .+..++|...+|.|||...+..+...... .+.+||+||.. +..|+.+.|.+.+ +.
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~~vLvLvPt~~L~~Q~~~~l~~~f-g~ 216 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GKQALVLVPEIALTPQMLARFRARF-GA 216 (679)
T ss_pred CCCCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHh-CC
Confidence 3579999999999987643 45678999999999999887666554433 34689999985 5599999999887 46
Q ss_pred eEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCC--cchHHH-----
Q 000684 253 NVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKN--SEAQLY----- 325 (1352)
Q Consensus 253 ~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN--~~Skl~----- 325 (1352)
.+.+++|.....+....+.-. .....+|+|+|...+. +.--+..+|||||+|...- .....+
T Consensus 217 ~v~~~~s~~s~~~r~~~~~~~------~~g~~~IVVgTrsal~-----~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~v 285 (679)
T PRK05580 217 PVAVLHSGLSDGERLDEWRKA------KRGEAKVVIGARSALF-----LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDL 285 (679)
T ss_pred CEEEEECCCCHHHHHHHHHHH------HcCCCCEEEeccHHhc-----ccccCCCEEEEECCCccccccCcCCCCcHHHH
Confidence 788888876554332222110 1235789999987653 2223578999999998632 222111
Q ss_pred HHHH-cccccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhHhhh
Q 000684 326 TTLS-EFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIKDVE 404 (1352)
Q Consensus 326 ~aL~-~l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~dv~ 404 (1352)
..++ .......+++||||-... |.... .+.+ ..+. +-+|. ..
T Consensus 286 a~~ra~~~~~~~il~SATps~~s----~~~~~---~g~~----------~~~~-----------------l~~r~---~~ 328 (679)
T PRK05580 286 AVVRAKLENIPVVLGSATPSLES----LANAQ---QGRY----------RLLR-----------------LTKRA---GG 328 (679)
T ss_pred HHHHhhccCCCEEEEcCCCCHHH----HHHHh---ccce----------eEEE-----------------ecccc---cc
Confidence 1122 223345688899994221 11110 0000 0000 00000 00
Q ss_pred ccCCCcEEEEEEecCCHH---------HHHHHHHHHHHhHHhhhccc--------cCchhhHHHHHHHHHHhcCCccccc
Q 000684 405 KSLPPKIERILRVEMSPL---------QKQYYKWILERNFHDLNKGV--------RGNQVSLLNIVVELKKCCNHPFLFE 467 (1352)
Q Consensus 405 ~~LPpk~e~iv~v~Ls~~---------Qk~~Yk~il~~~~~~l~~~~--------~~~~~~llnil~~Lrk~cnHP~L~~ 467 (1352)
..+|. . .+ +.|... -..+++.+. ..+..+. +|-. .+ . +..-|.+...+.
T Consensus 329 ~~~p~-v-~~--id~~~~~~~~~~~~ls~~l~~~i~----~~l~~g~qvll~~nrrGy~-~~----~-~C~~Cg~~~~C~ 394 (679)
T PRK05580 329 ARLPE-V-EI--IDMRELLRGENGSFLSPPLLEAIK----QRLERGEQVLLFLNRRGYA-PF----L-LCRDCGWVAECP 394 (679)
T ss_pred CCCCe-E-EE--EechhhhhhcccCCCCHHHHHHHH----HHHHcCCeEEEEEcCCCCC-Cc----e-EhhhCcCccCCC
Confidence 01111 1 11 122110 011111111 1111110 0100 00 0 112222222211
Q ss_pred cccCCCCCCCCCCchhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhc--CCcEEEEeCCCC-
Q 000684 468 SADHGYGGDTSINDTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYK--GFQFQRLDGSTK- 544 (1352)
Q Consensus 468 ~~e~~~~~~~~~~~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~--g~~~~rldGs~~- 544 (1352)
.-+...... .... .-....+|....+..... .-|... |..+..-.+.+++.|... ++++.++||+++
T Consensus 395 ~C~~~l~~h---~~~~--~l~Ch~Cg~~~~~~~~Cp---~Cg~~~--l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~ 464 (679)
T PRK05580 395 HCDASLTLH---RFQR--RLRCHHCGYQEPIPKACP---ECGSTD--LVPVGPGTERLEEELAELFPEARILRIDRDTTR 464 (679)
T ss_pred CCCCceeEE---CCCC--eEECCCCcCCCCCCCCCC---CCcCCe--eEEeeccHHHHHHHHHHhCCCCcEEEEeccccc
Confidence 110000000 0000 000000111000000000 111122 333444566677777654 889999999986
Q ss_pred -HHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEEEEcCCC---CCh---------hhHHHHhhhhcccCCCce
Q 000684 545 -AELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSD---WNP---------QNDLQAMSRAHRIGQQEV 611 (1352)
Q Consensus 545 -~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~Dsd---WNP---------~~dlQAigRahRiGQkk~ 611 (1352)
..+++++++.|.++.. -+|+.|+....|+|++.++.|+++|.| ..| +.+.|+.||++|.|....
T Consensus 465 ~~~~~~~~l~~f~~g~~---~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~ 541 (679)
T PRK05580 465 RKGALEQLLAQFARGEA---DILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGE 541 (679)
T ss_pred cchhHHHHHHHHhcCCC---CEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCE
Confidence 4678999999998544 489999999999999999999988876 233 678999999999888888
Q ss_pred EEEEEEec
Q 000684 612 VNIYRFVT 619 (1352)
Q Consensus 612 V~VyrLvt 619 (1352)
|.|...-.
T Consensus 542 viiqT~~p 549 (679)
T PRK05580 542 VLIQTYHP 549 (679)
T ss_pred EEEEeCCC
Confidence 76654433
No 93
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.60 E-value=1.1e-13 Score=178.55 Aligned_cols=331 Identities=19% Similarity=0.252 Sum_probs=220.5
Q ss_pred CCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHH-HHHHHHHHHhcCCCCcEEEEEChhhH-HHHHHHHHHHc---C
Q 000684 176 KLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQS-VSMLGFLQNAQQIPGPFLVVVPLSTL-SNWAKEFRKWL---P 250 (1352)
Q Consensus 176 ~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqa-Ia~l~~L~~~~~~~gp~LIVvP~s~L-~nW~~Ef~kw~---p 250 (1352)
.|+.||.++++.+. +|.++|++..||+|||... +.++..+.... ...+|+|-|+.-| ....+.|.+|. |
T Consensus 70 ~lY~HQ~~A~~~~~----~G~~vvVtTgTgSGKTe~FllPIld~~l~~~--~a~AL~lYPtnALa~DQ~~rl~~~~~~~~ 143 (851)
T COG1205 70 RLYSHQVDALRLIR----EGRNVVVTTGTGSGKTESFLLPILDHLLRDP--SARALLLYPTNALANDQAERLRELISDLP 143 (851)
T ss_pred cccHHHHHHHHHHH----CCCCEEEECCCCCchhHHHHHHHHHHHhhCc--CccEEEEechhhhHhhHHHHHHHHHHhCC
Confidence 49999999999886 7899999999999999985 45566665533 3478999998776 55777788775 4
Q ss_pred -CCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhh------HhhhhccCcceEecchhcccCCc-ch
Q 000684 251 -TMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKD------KAVLSKIKWNYLMVDEAHRLKNS-EA 322 (1352)
Q Consensus 251 -~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d------~~~L~~i~w~~lIVDEAHrlKN~-~S 322 (1352)
.+++..|.|+....+... + .....+||+|+|+|+--. .-.+..-.+.+|||||+|-..+. .|
T Consensus 144 ~~v~~~~y~Gdt~~~~r~~---~-------~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS 213 (851)
T COG1205 144 GKVTFGRYTGDTPPEERRA---I-------IRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGS 213 (851)
T ss_pred CcceeeeecCCCChHHHHH---H-------HhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchh
Confidence 467888999876544321 1 123689999999998541 11122224899999999999774 44
Q ss_pred HHHHHHHccc--------ccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcch
Q 000684 323 QLYTTLSEFS--------TKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPH 394 (1352)
Q Consensus 323 kl~~aL~~l~--------~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~ 394 (1352)
...-.++.+. ....++.|||- .+..+|...+......
T Consensus 214 ~vA~llRRL~~~~~~~~~~~q~i~~SAT~--------------------~np~e~~~~l~~~~f~--------------- 258 (851)
T COG1205 214 EVALLLRRLLRRLRRYGSPLQIICTSATL--------------------ANPGEFAEELFGRDFE--------------- 258 (851)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEeccc--------------------cChHHHHHHhcCCcce---------------
Confidence 4444444332 22347777773 2222333332211000
Q ss_pred hhhhhhHhhhcc-CCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCC
Q 000684 395 ILRRIIKDVEKS-LPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGY 473 (1352)
Q Consensus 395 ~LRR~k~dv~~~-LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~ 473 (1352)
..|..+ -|....+.+ +...+....
T Consensus 259 ------~~v~~~g~~~~~~~~~-~~~p~~~~~------------------------------------------------ 283 (851)
T COG1205 259 ------VPVDEDGSPRGLRYFV-RREPPIREL------------------------------------------------ 283 (851)
T ss_pred ------eeccCCCCCCCceEEE-EeCCcchhh------------------------------------------------
Confidence 000000 111111111 100000000
Q ss_pred CCCCCCCchhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHH----HHHHhcC----CcEEEEeCCCCH
Q 000684 474 GGDTSINDTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILA----EYMSYKG----FQFQRLDGSTKA 545 (1352)
Q Consensus 474 ~~~~~~~~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~----d~L~~~g----~~~~rldGs~~~ 545 (1352)
... ..-.+...+..++..+...|-++|+|+.....+..+. ..+...+ .......|++..
T Consensus 284 ------------~~~-~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~ 350 (851)
T COG1205 284 ------------AES-IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHR 350 (851)
T ss_pred ------------hhh-cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCH
Confidence 000 0123556677788888889999999999999999886 3344444 567888999999
Q ss_pred HHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEEEEcCCCC-ChhhHHHHhhhhcccCCCceEEEEEEecCCCHH
Q 000684 546 ELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDW-NPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVE 624 (1352)
Q Consensus 546 ~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdW-NP~~dlQAigRahRiGQkk~V~VyrLvt~~TiE 624 (1352)
.+|..+...|+.+ ...++++|.|..+||++.+.|.||..--+- .-..+.|+.|||+|-||.--| +...-.+-++
T Consensus 351 ~er~~ie~~~~~g---~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~--~~v~~~~~~d 425 (851)
T COG1205 351 EERRRIEAEFKEG---ELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLV--LVVLRSDPLD 425 (851)
T ss_pred HHHHHHHHHHhcC---CccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceE--EEEeCCCccc
Confidence 9999999999984 455999999999999999999999999887 778999999999999965333 3333366677
Q ss_pred HHHHHH
Q 000684 625 EDILER 630 (1352)
Q Consensus 625 E~Il~r 630 (1352)
..++..
T Consensus 426 ~yy~~~ 431 (851)
T COG1205 426 SYYLRH 431 (851)
T ss_pred hhhhhC
Confidence 666554
No 94
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.59 E-value=2.8e-14 Score=169.22 Aligned_cols=317 Identities=20% Similarity=0.253 Sum_probs=204.1
Q ss_pred CCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHH-HHHHHHHHHhc----CCCCcEEEEEChhh-HHHHHHHHHHHc
Q 000684 176 KLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQS-VSMLGFLQNAQ----QIPGPFLVVVPLST-LSNWAKEFRKWL 249 (1352)
Q Consensus 176 ~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqa-Ia~l~~L~~~~----~~~gp~LIVvP~s~-L~nW~~Ef~kw~ 249 (1352)
...|.|..++-.++ .+.+++-+..+|.|||+.- +-++..|.... ...-..+||.|... ..|-.+|+.+..
T Consensus 158 ~Pt~iq~~aipvfl----~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~ 233 (593)
T KOG0344|consen 158 EPTPIQKQAIPVFL----EKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYS 233 (593)
T ss_pred CCCcccchhhhhhh----cccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcC
Confidence 56778888888777 6789999999999999873 44555555433 22224699999855 488999998886
Q ss_pred --CC--CeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhh----hhccCcceEecchhcccCCcc
Q 000684 250 --PT--MNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAV----LSKIKWNYLMVDEAHRLKNSE 321 (1352)
Q Consensus 250 --p~--l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~----L~~i~w~~lIVDEAHrlKN~~ 321 (1352)
+. +.+..+......... .......++++++.|+..+...... +.-.....+|+|||.++.+..
T Consensus 234 ~~~~t~~~a~~~~~~~~~~qk---------~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~ 304 (593)
T KOG0344|consen 234 IDEGTSLRAAQFSKPAYPSQK---------PAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPE 304 (593)
T ss_pred CCCCCchhhhhcccccchhhc---------cchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChh
Confidence 22 222222222111110 0011224789999999987765432 222345679999999997762
Q ss_pred h---HHHHHHHcccccC--eEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhh
Q 000684 322 A---QLYTTLSEFSTKN--KLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHIL 396 (1352)
Q Consensus 322 S---kl~~aL~~l~~~~--rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~L 396 (1352)
. ++...+..+.+.. +=++++| . ...+.++-..+....+
T Consensus 305 ~f~~Qla~I~sac~s~~i~~a~FSat----------------~---------------------~~~VEE~~~~i~~~~~ 347 (593)
T KOG0344|consen 305 FFVEQLADIYSACQSPDIRVALFSAT----------------I---------------------SVYVEEWAELIKSDLK 347 (593)
T ss_pred hHHHHHHHHHHHhcCcchhhhhhhcc----------------c---------------------cHHHHHHHHHhhccce
Confidence 1 1222222211110 0111111 0 1111111111111111
Q ss_pred hhhhHhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCC
Q 000684 397 RRIIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGD 476 (1352)
Q Consensus 397 RR~k~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~ 476 (1352)
.|.|.+.+.+ ...+..+|.-| +
T Consensus 348 -----------------~vivg~~~sa-------------------------~~~V~QelvF~--------g-------- 369 (593)
T KOG0344|consen 348 -----------------RVIVGLRNSA-------------------------NETVDQELVFC--------G-------- 369 (593)
T ss_pred -----------------eEEEecchhH-------------------------hhhhhhhheee--------e--------
Confidence 1223222222 11111111111 0
Q ss_pred CCCCchhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHH-HhcCCcEEEEeCCCCHHHHHHHHHHh
Q 000684 477 TSINDTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYM-SYKGFQFQRLDGSTKAELRHQAMDHF 555 (1352)
Q Consensus 477 ~~~~~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L-~~~g~~~~rldGs~~~~eR~~~Id~F 555 (1352)
..-||+..+.+++....+ -.+|||.|...-...|...| ...++.+..++|..++.+|...+++|
T Consensus 370 -------------se~~K~lA~rq~v~~g~~--PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~F 434 (593)
T KOG0344|consen 370 -------------SEKGKLLALRQLVASGFK--PPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERF 434 (593)
T ss_pred -------------cchhHHHHHHHHHhccCC--CCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHH
Confidence 134688888888877643 36999999999988898989 78899999999999999999999999
Q ss_pred cCCCCCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecC
Q 000684 556 NAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTS 620 (1352)
Q Consensus 556 n~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~ 620 (1352)
.. +.+-+|++|...++||++.+++.||+||.+-.-..+++++||.+|.|+.... |.|.++
T Consensus 435 R~---g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~A--itfytd 494 (593)
T KOG0344|consen 435 RI---GKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKA--ITFYTD 494 (593)
T ss_pred hc---cCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcce--EEEecc
Confidence 98 4556899999999999999999999999999999999999999999997543 566665
No 95
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.59 E-value=2.1e-14 Score=176.07 Aligned_cols=355 Identities=14% Similarity=0.180 Sum_probs=217.5
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCC-cEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEECh-hhHHHHHHHHHHHcCC
Q 000684 174 GGKLRDYQLEGLNFLVNSWRNDT-NVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPL-STLSNWAKEFRKWLPT 251 (1352)
Q Consensus 174 ~~~Lr~yQlegvnwL~~~~~~~~-~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~-s~L~nW~~Ef~kw~p~ 251 (1352)
...+|.||..+++.+...+.+|. .++|++.+|+|||.+||+++..|...+. .+.+|++|-. +++.|=...|..+.|.
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~-~KRVLFLaDR~~Lv~QA~~af~~~~P~ 241 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGW-VKRVLFLADRNALVDQAYGAFEDFLPF 241 (875)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcch-hheeeEEechHHHHHHHHHHHHHhCCC
Confidence 35899999999999999998876 4789999999999999999999987654 4568999996 5668888889999998
Q ss_pred CeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHh-------hhhccCcceEecchhcccCCcchHH
Q 000684 252 MNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKA-------VLSKIKWNYLMVDEAHRLKNSEAQL 324 (1352)
Q Consensus 252 l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~-------~L~~i~w~~lIVDEAHrlKN~~Skl 324 (1352)
...+....... ....+.|.|+||+++..... .+..-.|++||||||||- -.+.
T Consensus 242 ~~~~n~i~~~~-----------------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg---i~~~ 301 (875)
T COG4096 242 GTKMNKIEDKK-----------------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG---IYSE 301 (875)
T ss_pred ccceeeeeccc-----------------CCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh---HHhh
Confidence 76665443321 12268999999999976322 233336999999999995 2223
Q ss_pred HHHHHcccccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhHhhh
Q 000684 325 YTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIKDVE 404 (1352)
Q Consensus 325 ~~aL~~l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~dv~ 404 (1352)
++.+..+-...+++|||||-..--..-+.+++ +.+... =.|...+. ..+.
T Consensus 302 ~~~I~dYFdA~~~gLTATP~~~~d~~T~~~F~-----------------g~Pt~~-----YsleeAV~--------DGfL 351 (875)
T COG4096 302 WSSILDYFDAATQGLTATPKETIDRSTYGFFN-----------------GEPTYA-----YSLEEAVE--------DGFL 351 (875)
T ss_pred hHHHHHHHHHHHHhhccCcccccccccccccC-----------------CCccee-----ecHHHHhh--------cccc
Confidence 34555555566777799996521111111111 111000 00000110 0010
Q ss_pred ccCCCcEEE-EEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCchh
Q 000684 405 KSLPPKIER-ILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDTS 483 (1352)
Q Consensus 405 ~~LPpk~e~-iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~~ 483 (1352)
.|++... .+.+...-+ .|....++ ...-.+..+ ..+ ......
T Consensus 352 --vpy~vi~i~~~~~~~G~---~~~~~ser-------------------ek~~g~~i~------~dd-------~~~~~~ 394 (875)
T COG4096 352 --VPYKVIRIDTDFDLDGW---KPDAGSER-------------------EKLQGEAID------EDD-------QNFEAR 394 (875)
T ss_pred --CCCCceEEeeeccccCc---CcCccchh-------------------hhhhccccC------ccc-------cccccc
Confidence 2322211 112111110 00000000 000000000 000 000111
Q ss_pred hHHHHhhhcchhHHHHHHHHHhhhc---C---CeEEEEecchhHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHH
Q 000684 484 KLERIILSSGKLVILDKLLVRLHET---K---HRVLIFSQMVRMLDILAEYMSYK-----GFQFQRLDGSTKAELRHQAM 552 (1352)
Q Consensus 484 ~l~~li~~SgKl~~L~kLL~~l~~~---g---~KVLIFSq~~~~ldiL~d~L~~~-----g~~~~rldGs~~~~eR~~~I 552 (1352)
.+..-+..-+-...++..|..+..+ | .|.||||.....++.|...|... |-=++.|+|.... =+..|
T Consensus 395 d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~--~q~~I 472 (875)
T COG4096 395 DFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQ--AQALI 472 (875)
T ss_pred ccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchh--hHHHH
Confidence 1111122222334444555544433 3 48999999999999999988643 2335678887654 45678
Q ss_pred HHhcCCCCCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhccc-------CCC-ceEEEEEEec
Q 000684 553 DHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRI-------GQQ-EVVNIYRFVT 619 (1352)
Q Consensus 553 d~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRi-------GQk-k~V~VyrLvt 619 (1352)
+.|-. .+....+.+|......|||.+.+-.++|+-.--+-.-+.|.+||.-|+ ||. ..+.|+.++-
T Consensus 473 d~f~~-ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~~ 546 (875)
T COG4096 473 DNFID-KEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFVD 546 (875)
T ss_pred HHHHh-cCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEEhhh
Confidence 99977 445557899999999999999999999999999999999999999998 343 3456666653
No 96
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.59 E-value=1.5e-13 Score=175.22 Aligned_cols=329 Identities=21% Similarity=0.184 Sum_probs=196.2
Q ss_pred CCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChh-hHHHHHHHHHHHc-CCCe
Q 000684 176 KLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLS-TLSNWAKEFRKWL-PTMN 253 (1352)
Q Consensus 176 ~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s-~L~nW~~Ef~kw~-p~l~ 253 (1352)
+|+|.|.+++.-.+. .+.|++++..||.|||+.|..+|..-... ..++.+.|||+. +..+-.++|.+|. -+++
T Consensus 31 el~~~qq~av~~~~~---~~~N~li~aPTgsGKTlIA~lai~~~l~~--~~~k~vYivPlkALa~Ek~~~~~~~~~~Gir 105 (766)
T COG1204 31 ELFNPQQEAVEKGLL---SDENVLISAPTGSGKTLIALLAILSTLLE--GGGKVVYIVPLKALAEEKYEEFSRLEELGIR 105 (766)
T ss_pred HhhHHHHHHhhcccc---CCCcEEEEcCCCCchHHHHHHHHHHHHHh--cCCcEEEEeChHHHHHHHHHHhhhHHhcCCE
Confidence 899999999976663 38999999999999999876554333322 257999999985 5577888888543 2789
Q ss_pred EEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhh--hccCcceEecchhcccCCc-chH----HHH
Q 000684 254 VIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVL--SKIKWNYLMVDEAHRLKNS-EAQ----LYT 326 (1352)
Q Consensus 254 vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L--~~i~w~~lIVDEAHrlKN~-~Sk----l~~ 326 (1352)
|.+++|+...... ...+++|+|||||.+-.-.... -....++|||||+|.+... ... +..
T Consensus 106 V~~~TgD~~~~~~-------------~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~ 172 (766)
T COG1204 106 VGISTGDYDLDDE-------------RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVA 172 (766)
T ss_pred EEEecCCcccchh-------------hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHH
Confidence 9999999765431 2347899999999774221111 1225689999999999665 111 222
Q ss_pred HHHcccc-cCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhHhhhc
Q 000684 327 TLSEFST-KNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIKDVEK 405 (1352)
Q Consensus 327 aL~~l~~-~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~dv~~ 405 (1352)
-++.+.. -..+.||||- .|..|+...| +...+.+. ..|.-++|.
T Consensus 173 r~~~~~~~~rivgLSATl--pN~~evA~wL---~a~~~~~~------------------------~rp~~l~~~------ 217 (766)
T COG1204 173 RMRRLNELIRIVGLSATL--PNAEEVADWL---NAKLVESD------------------------WRPVPLRRG------ 217 (766)
T ss_pred HHHhhCcceEEEEEeeec--CCHHHHHHHh---CCcccccC------------------------CCCcccccC------
Confidence 2222333 3458899994 3455554433 22222110 001111110
Q ss_pred cCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCchhhH
Q 000684 406 SLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDTSKL 485 (1352)
Q Consensus 406 ~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~~~l 485 (1352)
.|...... ... +...
T Consensus 218 -v~~~~~~~-~~~-------------------------~~~k-------------------------------------- 232 (766)
T COG1204 218 -VPYVGAFL-GAD-------------------------GKKK-------------------------------------- 232 (766)
T ss_pred -CccceEEE-Eec-------------------------Cccc--------------------------------------
Confidence 00000000 000 0000
Q ss_pred HHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHh----c-----------------------------
Q 000684 486 ERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSY----K----------------------------- 532 (1352)
Q Consensus 486 ~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~----~----------------------------- 532 (1352)
.........+..++....+.|..||||+...+.....+..|.. .
T Consensus 233 ---~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l 309 (766)
T COG1204 233 ---TWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEEL 309 (766)
T ss_pred ---cccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHH
Confidence 0011122233344444556677777777776644433333331 0
Q ss_pred ----CCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEEEEcCC----------CCChhhHHH
Q 000684 533 ----GFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDS----------DWNPQNDLQ 598 (1352)
Q Consensus 533 ----g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~Ds----------dWNP~~dlQ 598 (1352)
-..+..-|.+++.++|+-+=+.|++ ..+-+|+||.....|+||+ |++|||-|. +-++...+|
T Consensus 310 ~e~v~~GvafHhAGL~~~~R~~vE~~Fr~---g~ikVlv~TpTLA~GVNLP-A~~VIIk~~~~y~~~~g~~~i~~~dv~Q 385 (766)
T COG1204 310 AELVLRGVAFHHAGLPREDRQLVEDAFRK---GKIKVLVSTPTLAAGVNLP-ARTVIIKDTRRYDPKGGIVDIPVLDVLQ 385 (766)
T ss_pred HHHHHhCccccccCCCHHHHHHHHHHHhc---CCceEEEechHHhhhcCCc-ceEEEEeeeEEEcCCCCeEECchhhHhh
Confidence 0112334678899999999999998 4566999999999999999 667766442 346778899
Q ss_pred HhhhhcccCCCceEEEEEEecCCCHHHHHHHH
Q 000684 599 AMSRAHRIGQQEVVNIYRFVTSKSVEEDILER 630 (1352)
Q Consensus 599 AigRahRiGQkk~V~VyrLvt~~TiEE~Il~r 630 (1352)
-.|||+|.|=..--..+-+ +.++-+...+..
T Consensus 386 M~GRAGRPg~d~~G~~~i~-~~~~~~~~~~~~ 416 (766)
T COG1204 386 MAGRAGRPGYDDYGEAIIL-ATSHDELEYLAE 416 (766)
T ss_pred ccCcCCCCCcCCCCcEEEE-ecCccchhHHHH
Confidence 9999999986533333333 333334444333
No 97
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.59 E-value=1.4e-13 Score=177.10 Aligned_cols=107 Identities=17% Similarity=0.175 Sum_probs=91.6
Q ss_pred CCeEEEEecchhHHHHHHHHHHh---cCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEEE
Q 000684 509 KHRVLIFSQMVRMLDILAEYMSY---KGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVI 585 (1352)
Q Consensus 509 g~KVLIFSq~~~~ldiL~d~L~~---~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVI 585 (1352)
+..+|||+.....++.+...|.. .++.+..++|+++.++|..+++.|.. +...+||+|+.++.||++..+++||
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~---G~rkVlVATnIAErgItIp~V~~VI 285 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQ---GRRKVVLATNIAETSLTIEGIRVVI 285 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhccc---CCeEEEEecchHhhcccccCceEEE
Confidence 45799999999999999999976 47999999999999999999999976 3446899999999999999999999
Q ss_pred EcCCC----CChhh--------------HHHHhhhhcccCCCceEEEEEEecCC
Q 000684 586 IFDSD----WNPQN--------------DLQAMSRAHRIGQQEVVNIYRFVTSK 621 (1352)
Q Consensus 586 i~Dsd----WNP~~--------------dlQAigRahRiGQkk~V~VyrLvt~~ 621 (1352)
.++.. |||.. ..||.|||+|. ++-..|+|+++.
T Consensus 286 D~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~ 336 (819)
T TIGR01970 286 DSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEE 336 (819)
T ss_pred EcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHH
Confidence 99864 56654 68999999997 345569999865
No 98
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.59 E-value=3.6e-15 Score=159.00 Aligned_cols=162 Identities=29% Similarity=0.411 Sum_probs=109.8
Q ss_pred CCCcHHHHHHHHHHHHHhcCC---CcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEECh-hhHHHHHHHHHHHcC
Q 000684 175 GKLRDYQLEGLNFLVNSWRND---TNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPL-STLSNWAKEFRKWLP 250 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~---~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~-s~L~nW~~Ef~kw~p 250 (1352)
.+|||||.+++.-++..+... .+++|..+||+|||++++.++..+.. ++|||||. +++.||..+|..+.+
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~ 75 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGS 75 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHST
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhh
Confidence 369999999999999887765 88999999999999999988877765 79999998 666999999988876
Q ss_pred CCeEEEEEcCc---hhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhh-------------hhccCcceEecchh
Q 000684 251 TMNVIVYVGTR---ASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAV-------------LSKIKWNYLMVDEA 314 (1352)
Q Consensus 251 ~l~vvvy~G~~---~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~-------------L~~i~w~~lIVDEA 314 (1352)
........... ..+....................+++++||+.+...... +..-.+++||+|||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEa 155 (184)
T PF04851_consen 76 EKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEA 155 (184)
T ss_dssp TSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETG
T ss_pred hhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehh
Confidence 54443222110 000000000000000001234678999999998765332 22336899999999
Q ss_pred cccCCcchHHHHHHHcccccCeEEEeccCC
Q 000684 315 HRLKNSEAQLYTTLSEFSTKNKLLITGTPL 344 (1352)
Q Consensus 315 HrlKN~~Skl~~aL~~l~~~~rlLLTGTPl 344 (1352)
|++.+... ++.+..+...++|+|||||-
T Consensus 156 H~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 156 HHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp GCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred hhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 99955432 66666688889999999994
No 99
>PRK14701 reverse gyrase; Provisional
Probab=99.57 E-value=1.3e-13 Score=186.77 Aligned_cols=132 Identities=14% Similarity=0.253 Sum_probs=92.8
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhH-HHHHHHHHHHcC--
Q 000684 174 GGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTL-SNWAKEFRKWLP-- 250 (1352)
Q Consensus 174 ~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L-~nW~~Ef~kw~p-- 250 (1352)
|.++++.|.+++..++ .|.++++...||+|||+..+.+...+. . .....|||+|+..| .|....|..++.
T Consensus 77 G~~pt~iQ~~~i~~il----~G~d~li~APTGsGKTl~~~~~al~~~-~--~g~~aLVl~PTreLa~Qi~~~l~~l~~~~ 149 (1638)
T PRK14701 77 GFEFWSIQKTWAKRIL----RGKSFSIVAPTGMGKSTFGAFIALFLA-L--KGKKCYIILPTTLLVKQTVEKIESFCEKA 149 (1638)
T ss_pred CCCCCHHHHHHHHHHH----cCCCEEEEEcCCCCHHHHHHHHHHHHH-h--cCCeEEEEECHHHHHHHHHHHHHHHHhhc
Confidence 4479999999998887 688999999999999983222222221 1 12368999999655 888899988764
Q ss_pred --CCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccC
Q 000684 251 --TMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLK 318 (1352)
Q Consensus 251 --~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlK 318 (1352)
++.+..++|+....+.....+.. ....++|+|+|++.+......+....+++|||||||++.
T Consensus 150 ~~~v~v~~~~g~~s~~e~~~~~~~l------~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml 213 (1638)
T PRK14701 150 NLDVRLVYYHSNLRKKEKEEFLERI------ENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFL 213 (1638)
T ss_pred CCceeEEEEeCCCCHHHHHHHHHHH------hcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceecc
Confidence 35667788876554432211111 123589999999988765444434678999999999984
No 100
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.57 E-value=1.3e-13 Score=157.55 Aligned_cols=316 Identities=21% Similarity=0.267 Sum_probs=201.6
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHH-HHHHHHHHHHhcCC----CCc-EEEEEChhhH-HHHHHHHHH---Hc
Q 000684 180 YQLEGLNFLVNSWRNDTNVILADEMGLGKTVQ-SVSMLGFLQNAQQI----PGP-FLVVVPLSTL-SNWAKEFRK---WL 249 (1352)
Q Consensus 180 yQlegvnwL~~~~~~~~~~ILADEmGLGKTlq-aIa~l~~L~~~~~~----~gp-~LIVvP~s~L-~nW~~Ef~k---w~ 249 (1352)
.|..++-.++ .|.+++.-.-+|+|||.. +|.++..|...... .|| .+|+||+.-| .|-...|.+ +|
T Consensus 45 IQs~aIplaL----EgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c 120 (569)
T KOG0346|consen 45 IQSSAIPLAL----EGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYC 120 (569)
T ss_pred hhhcccchhh----cCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHH
Confidence 4666776666 678899999999999998 56777777654322 333 6999998655 666666654 45
Q ss_pred C-CCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHh--h-hhccCcceEecchhcccCCcchHHH
Q 000684 250 P-TMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKA--V-LSKIKWNYLMVDEAHRLKNSEAQLY 325 (1352)
Q Consensus 250 p-~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~--~-L~~i~w~~lIVDEAHrlKN~~Skl~ 325 (1352)
+ +++++-+..+...- +.+ .- -....+|||+|+..++.... . ...-...++|||||+-+....
T Consensus 121 ~k~lr~~nl~s~~sds-v~~-~~--------L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfG---- 186 (569)
T KOG0346|consen 121 SKDLRAINLASSMSDS-VNS-VA--------LMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFG---- 186 (569)
T ss_pred HHhhhhhhhhcccchH-HHH-HH--------HccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcc----
Confidence 4 45554443222211 111 11 12367999999999887533 2 222356899999998763221
Q ss_pred HHHHcccccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhHhhhc
Q 000684 326 TTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIKDVEK 405 (1352)
Q Consensus 326 ~aL~~l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~dv~~ 405 (1352)
- ++.+..| ..
T Consensus 187 ---------------------------------------Y---------------eedlk~l----------------~~ 196 (569)
T KOG0346|consen 187 ---------------------------------------Y---------------EEDLKKL----------------RS 196 (569)
T ss_pred ---------------------------------------c---------------HHHHHHH----------------HH
Confidence 0 1111111 11
Q ss_pred cCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHH-hcCCccccccccCCCCCCCCCCchhh
Q 000684 406 SLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKK-CCNHPFLFESADHGYGGDTSINDTSK 484 (1352)
Q Consensus 406 ~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk-~cnHP~L~~~~e~~~~~~~~~~~~~~ 484 (1352)
.||+. |+.++.. ..+..-+..|++ ||+.|..+.-.+............
T Consensus 197 ~LPr~----------------~Q~~LmS-------------ATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy-- 245 (569)
T KOG0346|consen 197 HLPRI----------------YQCFLMS-------------ATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQY-- 245 (569)
T ss_pred hCCch----------------hhheeeh-------------hhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEE--
Confidence 23322 1111110 011112233443 556677765555443322111111
Q ss_pred HHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcE
Q 000684 485 LERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFC 564 (1352)
Q Consensus 485 l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~v 564 (1352)
.-.+..-.|+.+|--||+--.- ..|.|||.+...+.-.|.-+|..-|++.|.|.|.++...|.-+|++||. +-+-
T Consensus 246 -~v~cse~DKflllyallKL~LI-~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNk---G~Yd 320 (569)
T KOG0346|consen 246 -QVKCSEEDKFLLLYALLKLRLI-RGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNK---GLYD 320 (569)
T ss_pred -EEEeccchhHHHHHHHHHHHHh-cCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhC---ccee
Confidence 0111233466666666653222 3489999999999999999999999999999999999999999999998 4455
Q ss_pred EEeecC--------------------------C---------CccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCC
Q 000684 565 FLLSTR--------------------------A---------GGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQ 609 (1352)
Q Consensus 565 fLLSTr--------------------------A---------gg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQk 609 (1352)
++|+|+ + ..+|||.+.+..||+||.+-++..|++|+||..|-|.+
T Consensus 321 ivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~ 400 (569)
T KOG0346|consen 321 IVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNK 400 (569)
T ss_pred EEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCC
Confidence 788877 1 14799999999999999999999999999999999988
Q ss_pred ceEEEEEEecCC
Q 000684 610 EVVNIYRFVTSK 621 (1352)
Q Consensus 610 k~V~VyrLvt~~ 621 (1352)
..+ ..||...
T Consensus 401 Gta--lSfv~P~ 410 (569)
T KOG0346|consen 401 GTA--LSFVSPK 410 (569)
T ss_pred Cce--EEEecch
Confidence 766 4455543
No 101
>PRK09694 helicase Cas3; Provisional
Probab=99.56 E-value=5.9e-13 Score=171.46 Aligned_cols=341 Identities=16% Similarity=0.164 Sum_probs=192.8
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChh-hHHHHHHHHHHH----
Q 000684 174 GGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLS-TLSNWAKEFRKW---- 248 (1352)
Q Consensus 174 ~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s-~L~nW~~Ef~kw---- 248 (1352)
+..++|+|....+-. ..+...||-+.||.|||-.++.++..+..... .+.+++..|.- +..+-...+..|
T Consensus 284 ~~~p~p~Q~~~~~~~----~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~-~~gi~~aLPT~Atan~m~~Rl~~~~~~~ 358 (878)
T PRK09694 284 GYQPRQLQTLVDALP----LQPGLTIIEAPTGSGKTEAALAYAWRLIDQGL-ADSIIFALPTQATANAMLSRLEALASKL 358 (878)
T ss_pred CCCChHHHHHHHhhc----cCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCC-CCeEEEECcHHHHHHHHHHHHHHHHHHh
Confidence 568999999774322 24567899999999999999988877765443 34588899975 445566666543
Q ss_pred cCCCeEEEEEcCchhHHHH------------------HHHhhhccccCCCCccccEEEecHHHHHhhH-----hhhhc--
Q 000684 249 LPTMNVIVYVGTRASREVC------------------QQYEFYNDKKVGRPIKFNTLLTTYEVVLKDK-----AVLSK-- 303 (1352)
Q Consensus 249 ~p~l~vvvy~G~~~~r~~i------------------~~~e~~~~~~~~~~~kf~VlItTye~l~~d~-----~~L~~-- 303 (1352)
+++.++.+.||...-.... ...+|+... ..+..-..|+|+|.+.++... .+++.
T Consensus 359 f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~ 437 (878)
T PRK09694 359 FPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQS-NKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFG 437 (878)
T ss_pred cCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhh-hhhhhcCCEEEcCHHHHHHHHHccchHHHHHHh
Confidence 4566788888865421110 011232211 011223689999998877421 12222
Q ss_pred cCcceEecchhcccCCcchHH-HHHHHccc--ccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhccccccc
Q 000684 304 IKWNYLMVDEAHRLKNSEAQL-YTTLSEFS--TKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFN 380 (1352)
Q Consensus 304 i~w~~lIVDEAHrlKN~~Skl-~~aL~~l~--~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~ 380 (1352)
+.-.+|||||+|-+-.....+ ...|..+. ....++||||+-..-..+|...+..-.+.. ....|.-+....
T Consensus 438 La~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~------~~~~YPlvt~~~ 511 (878)
T PRK09694 438 LGRSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVE------LSSAYPLITWRG 511 (878)
T ss_pred hccCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccc------cccccccccccc
Confidence 234589999999984332222 33333222 245799999973322222222110000000 000000000000
Q ss_pred HHHHHHHHHhhcchhhhhhhHhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhc
Q 000684 381 ENELANLHMELRPHILRRIIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCC 460 (1352)
Q Consensus 381 ~~~i~~L~~~L~p~~LRR~k~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~c 460 (1352)
.. ....+-++.. ...+|.. +.|.+.
T Consensus 512 ~~-------~~~~~~~~~~----~~~~~~~--~~v~v~------------------------------------------ 536 (878)
T PRK09694 512 VN-------GAQRFDLSAH----PEQLPAR--FTIQLE------------------------------------------ 536 (878)
T ss_pred cc-------cceeeecccc----ccccCcc--eEEEEE------------------------------------------
Confidence 00 0000000000 0000000 000000
Q ss_pred CCccccccccCCCCCCCCCCchhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcC---CcEE
Q 000684 461 NHPFLFESADHGYGGDTSINDTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKG---FQFQ 537 (1352)
Q Consensus 461 nHP~L~~~~e~~~~~~~~~~~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g---~~~~ 537 (1352)
+... . .....-.++..++..+ ..|.+||||++.+..+..+.+.|...+ +.+.
T Consensus 537 --~~~~-------------~---------~~~~~~~~l~~i~~~~-~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~ 591 (878)
T PRK09694 537 --PICL-------------A---------DMLPDLTLLQRMIAAA-NAGAQVCLICNLVDDAQKLYQRLKELNNTQVDID 591 (878)
T ss_pred --eecc-------------c---------cccCHHHHHHHHHHHH-hcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEE
Confidence 0000 0 0001122333444333 468899999999999999999998764 6799
Q ss_pred EEeCCCCHHHH----HHHHHHhcCCCC-CCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCC
Q 000684 538 RLDGSTKAELR----HQAMDHFNAPGS-EDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQ 609 (1352)
Q Consensus 538 rldGs~~~~eR----~~~Id~Fn~~~s-~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQk 609 (1352)
.++|.++..+| +++++.|...+. ....+||+|.+...|||+ .+|+||....+ ...++||+||+||-|.+
T Consensus 592 llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 592 LFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 99999999999 567889943222 224689999999999999 58998887665 56889999999999874
No 102
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.56 E-value=5e-13 Score=168.85 Aligned_cols=387 Identities=19% Similarity=0.218 Sum_probs=224.9
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHH-HHHHHHhcCCCCcEEEEEChhhH----HHHHHHHHHH
Q 000684 174 GGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSM-LGFLQNAQQIPGPFLVVVPLSTL----SNWAKEFRKW 248 (1352)
Q Consensus 174 ~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~-l~~L~~~~~~~gp~LIVvP~s~L----~nW~~Ef~kw 248 (1352)
|...+|-|+-|.--| +.|-|.-..||.|||++++.- +.... . ...++||+|+.-| .+|...|-++
T Consensus 80 g~~~ydvQliGg~~L------h~G~Iaem~TGeGKTL~a~Lpa~~~al-~---G~~V~VvTpn~yLA~qd~e~m~~l~~~ 149 (896)
T PRK13104 80 GLRHFDVQLIGGMVL------HEGNIAEMRTGEGKTLVATLPAYLNAI-S---GRGVHIVTVNDYLAKRDSQWMKPIYEF 149 (896)
T ss_pred CCCcchHHHhhhhhh------ccCccccccCCCCchHHHHHHHHHHHh-c---CCCEEEEcCCHHHHHHHHHHHHHHhcc
Confidence 456777788887554 256688999999999975432 22222 1 1248999999877 4477777776
Q ss_pred cCCCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHH----HhhHhhhh-----ccCcceEecchhcccCC
Q 000684 249 LPTMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVV----LKDKAVLS-----KIKWNYLMVDEAHRLKN 319 (1352)
Q Consensus 249 ~p~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l----~~d~~~L~-----~i~w~~lIVDEAHrlKN 319 (1352)
+ ++.+.++.|+.........| .++|+++|...+ +++.-.+. .-.+.++|||||+++.-
T Consensus 150 l-GLtv~~i~gg~~~~~r~~~y------------~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLI 216 (896)
T PRK13104 150 L-GLTVGVIYPDMSHKEKQEAY------------KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILI 216 (896)
T ss_pred c-CceEEEEeCCCCHHHHHHHh------------CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhh
Confidence 5 58888888875544432222 579999999987 44432221 13789999999999843
Q ss_pred cchHHHHHHHcccccCeEEEeccCCCCCHHHHHH----HHhhcCCC-------CCC-----------C-hhHHHHHhc--
Q 000684 320 SEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWA----LLHFLDHD-------KFK-----------S-KDDFIQNYK-- 374 (1352)
Q Consensus 320 ~~Skl~~aL~~l~~~~rlLLTGTPlqNnl~EL~s----LL~fL~p~-------~f~-----------~-~~~F~~~f~-- 374 (1352)
.+ ++.-|+|||.+-. . .++|. ++.-|.++ .|. + .....+.+.
T Consensus 217 De-----------ArtPLIISg~~~~-~-~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~ 283 (896)
T PRK13104 217 DE-----------ARTPLIISGAAED-S-SELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTK 283 (896)
T ss_pred hc-----------cCCceeeeCCCcc-c-hHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHh
Confidence 32 2344888886432 2 33443 33333332 110 0 001111111
Q ss_pred -cc-c----cccH---HHHHHHHHhhcchh-hhhhhHhhhccCCCcEEEEEEecCC-------HHHHHHHHHHHHHh---
Q 000684 375 -NL-S----SFNE---NELANLHMELRPHI-LRRIIKDVEKSLPPKIERILRVEMS-------PLQKQYYKWILERN--- 434 (1352)
Q Consensus 375 -~~-~----~~~~---~~i~~L~~~L~p~~-LRR~k~dv~~~LPpk~e~iv~v~Ls-------~~Qk~~Yk~il~~~--- 434 (1352)
.+ . -.+. .....+...|+-+. +.|-+.-+. -.....+|- +.| .++--+.++|..+-
T Consensus 284 ~~il~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV---~dg~V~iVD-e~TGR~m~grr~s~GLHQaiEaKE~v~ 359 (896)
T PRK13104 284 AKLLDPGESLYHASNIMLMHHVNAALKAHAMFHRDIDYIV---KDNQVVIVD-EHTGRTMPGRRWSEGLHQAVEAKEGVP 359 (896)
T ss_pred CCccCCcccccCchhhhHHHHHHHHHHHHHHhcCCCceEE---ECCEEEEEE-CCCCCcCCCCCcChHHHHHHHHHcCCC
Confidence 00 0 0000 11122222232221 111111110 011111111 111 11111122221111
Q ss_pred -------------------HHhhhccccCchhhHHHHHHHHHHhcCCccccccccC-CCCCCCCCCchhhHHHHhhhcch
Q 000684 435 -------------------FHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADH-GYGGDTSINDTSKLERIILSSGK 494 (1352)
Q Consensus 435 -------------------~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~-~~~~~~~~~~~~~l~~li~~SgK 494 (1352)
|..| .|..| ..-..-.++.++.+-+.+.-+... ..-.+ ..+ .-......|
T Consensus 360 i~~e~~t~AsIT~Qn~Fr~Y~kL-sGMTG---Ta~te~~Ef~~iY~l~Vv~IPtnkp~~R~d--~~d----~v~~t~~~k 429 (896)
T PRK13104 360 IQNENQTLASITFQNFFRMYNKL-SGMTG---TADTEAYEFQQIYNLEVVVIPTNRSMIRKD--EAD----LVYLTQADK 429 (896)
T ss_pred CCCCceeeeeehHHHHHHhcchh-ccCCC---CChhHHHHHHHHhCCCEEECCCCCCcceec--CCC----eEEcCHHHH
Confidence 1111 11111 111223344554444333221110 00000 000 111234568
Q ss_pred hHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCCcc
Q 000684 495 LVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAGGL 574 (1352)
Q Consensus 495 l~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~ 574 (1352)
..++.+-+..+++.|..|||||......+.|..+|...|+++..|+|.....+|+.+.+.|..+ .++|+|..+|+
T Consensus 430 ~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G-----~VtIATNmAGR 504 (896)
T PRK13104 430 FQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG-----AVTIATNMAGR 504 (896)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC-----cEEEeccCccC
Confidence 8888888889999999999999999999999999999999999999999999999999999874 38999999999
Q ss_pred CCCCCcc--------------------------------------CEEEEcCCCCChhhHHHHhhhhcccCCCceEEEE
Q 000684 575 GINLATA--------------------------------------DTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIY 615 (1352)
Q Consensus 575 GINL~~A--------------------------------------dtVIi~DsdWNP~~dlQAigRahRiGQkk~V~Vy 615 (1352)
|+|+.=. =+||.-.-.-|-..|.|..|||+|.|.......|
T Consensus 505 GtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~ 583 (896)
T PRK13104 505 GTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFY 583 (896)
T ss_pred CcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEE
Confidence 9997521 2788888999999999999999999998776554
No 103
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.56 E-value=3.4e-13 Score=173.96 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=92.2
Q ss_pred cCCeEEEEecchhHHHHHHHHHHh---cCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEE
Q 000684 508 TKHRVLIFSQMVRMLDILAEYMSY---KGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTV 584 (1352)
Q Consensus 508 ~g~KVLIFSq~~~~ldiL~d~L~~---~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtV 584 (1352)
.+..+|||+.....++.+.+.|.. .++.+..++|+++.++|+.++..|.. +...+||+|+.+..||++..+++|
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~---G~rkVlvATnIAErsLtIp~V~~V 287 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPA---GRRKVVLATNIAETSLTIEGIRLV 287 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccC---CCeEEEEecchHHhcccccCceEE
Confidence 356899999999999999999986 57889999999999999999999875 345699999999999999999999
Q ss_pred EEcCCC----CChh--------------hHHHHhhhhcccCCCceEEEEEEecCCCH
Q 000684 585 IIFDSD----WNPQ--------------NDLQAMSRAHRIGQQEVVNIYRFVTSKSV 623 (1352)
Q Consensus 585 Ii~Dsd----WNP~--------------~dlQAigRahRiGQkk~V~VyrLvt~~Ti 623 (1352)
|.++.. |+|. ...||.|||+|.+ +-.+|||+++...
T Consensus 288 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~---~G~cyrL~t~~~~ 341 (812)
T PRK11664 288 VDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLE---PGICLHLYSKEQA 341 (812)
T ss_pred EECCCcccccccccCCcceeEEEeechhhhhhhccccCCCC---CcEEEEecCHHHH
Confidence 997654 3333 5789888888873 5667999997644
No 104
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.55 E-value=5.3e-13 Score=167.95 Aligned_cols=118 Identities=17% Similarity=0.177 Sum_probs=103.3
Q ss_pred cchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCC
Q 000684 492 SGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRA 571 (1352)
Q Consensus 492 SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrA 571 (1352)
..|...|.+.+....+.|..|||||......+.|...|...|+++..|+|.....++..+...+.. + .++|+|..
T Consensus 423 ~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~---g--~VtIATnm 497 (796)
T PRK12906 423 DSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQR---G--AVTIATNM 497 (796)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCC---c--eEEEEecc
Confidence 458888889998888899999999999999999999999999999999999886666655555544 2 38999999
Q ss_pred CccCCCCC---ccC-----EEEEcCCCCChhhHHHHhhhhcccCCCceEEE
Q 000684 572 GGLGINLA---TAD-----TVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNI 614 (1352)
Q Consensus 572 gg~GINL~---~Ad-----tVIi~DsdWNP~~dlQAigRahRiGQkk~V~V 614 (1352)
+|+|+|+. .+. +||.++.+-|...|.|+.||++|.|.......
T Consensus 498 AGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~ 548 (796)
T PRK12906 498 AGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 548 (796)
T ss_pred ccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEE
Confidence 99999995 566 99999999999999999999999999876643
No 105
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.55 E-value=8e-13 Score=166.99 Aligned_cols=389 Identities=18% Similarity=0.205 Sum_probs=221.6
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhH----HHHHHHHHHHc
Q 000684 174 GGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTL----SNWAKEFRKWL 249 (1352)
Q Consensus 174 ~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L----~nW~~Ef~kw~ 249 (1352)
|...+|-|+-|.--| +.|.|.-..||.|||+++...+ ++.... ..+ +-||+|+..| .+|...+-.++
T Consensus 79 g~~~~dvQlig~l~L------~~G~Iaem~TGeGKTLva~lpa-~l~aL~-G~~-V~IvTpn~yLA~rd~e~~~~l~~~L 149 (830)
T PRK12904 79 GMRHFDVQLIGGMVL------HEGKIAEMKTGEGKTLVATLPA-YLNALT-GKG-VHVVTVNDYLAKRDAEWMGPLYEFL 149 (830)
T ss_pred CCCCCccHHHhhHHh------cCCchhhhhcCCCcHHHHHHHH-HHHHHc-CCC-EEEEecCHHHHHHHHHHHHHHHhhc
Confidence 456777888887544 2456999999999999754322 111111 123 5599999887 33666665555
Q ss_pred CCCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHH----hhH-----hhhhccCcceEecchhcccCCc
Q 000684 250 PTMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVL----KDK-----AVLSKIKWNYLMVDEAHRLKNS 320 (1352)
Q Consensus 250 p~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~----~d~-----~~L~~i~w~~lIVDEAHrlKN~ 320 (1352)
++++.+..|+.........| ..+|++.|...+. ++. ..+..-.+.++|||||.++.-.
T Consensus 150 -Glsv~~i~~~~~~~er~~~y------------~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLID 216 (830)
T PRK12904 150 -GLSVGVILSGMSPEERREAY------------AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILID 216 (830)
T ss_pred -CCeEEEEcCCCCHHHHHHhc------------CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheec
Confidence 68888888865554433222 4789999987762 222 1223346889999999998433
Q ss_pred chHHHHHHHcccccCeEEEeccCCCCCHHHHHHHH----hhcCCCC-CCC------------hhHHHHHhccccc-ccH-
Q 000684 321 EAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALL----HFLDHDK-FKS------------KDDFIQNYKNLSS-FNE- 381 (1352)
Q Consensus 321 ~Skl~~aL~~l~~~~rlLLTGTPlqNnl~EL~sLL----~fL~p~~-f~~------------~~~F~~~f~~~~~-~~~- 381 (1352)
. ++.-|++||.+-. ..++|..+ ..|..+. |.- .....+.+..+.. .+.
T Consensus 217 e-----------ArtpLiiSg~~~~--~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~ 283 (830)
T PRK12904 217 E-----------ARTPLIISGPAED--SSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPE 283 (830)
T ss_pred c-----------CCCceeeECCCCc--ccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChh
Confidence 2 2334778776432 23344433 3333221 100 0011111111100 011
Q ss_pred --HHHHHHHHhhcchh-hhhhhHhhhccCCCcEEEEEEecCC-------HHHHHHHHHHHHH------------------
Q 000684 382 --NELANLHMELRPHI-LRRIIKDVEKSLPPKIERILRVEMS-------PLQKQYYKWILER------------------ 433 (1352)
Q Consensus 382 --~~i~~L~~~L~p~~-LRR~k~dv~~~LPpk~e~iv~v~Ls-------~~Qk~~Yk~il~~------------------ 433 (1352)
.....+...|+-+. +.+-+.-+ +......+|- +.| .++--+.+.|..+
T Consensus 284 ~~~~~~~i~~AL~A~~l~~~d~dYi---V~dg~V~ivD-e~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~q 359 (830)
T PRK12904 284 NIALVHHLNQALRAHELFKRDVDYI---VKDGEVVIVD-EFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQ 359 (830)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCcEE---EECCEEEEEE-CCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHH
Confidence 11222223332221 12211111 1111111111 111 1111111111111
Q ss_pred h----HHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCchhhHHHHhhhcchhHHHHHHHHHhhhcC
Q 000684 434 N----FHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDTSKLERIILSSGKLVILDKLLVRLHETK 509 (1352)
Q Consensus 434 ~----~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~~~l~~li~~SgKl~~L~kLL~~l~~~g 509 (1352)
+ |..+ .|..| .......++.++.+-+.+.-+.-...... ...+ .-......|...|.+.+..+...|
T Consensus 360 n~Fr~Y~kl-~GmTG---Ta~te~~E~~~iY~l~vv~IPtnkp~~r~-d~~d----~i~~t~~~K~~aI~~~I~~~~~~g 430 (830)
T PRK12904 360 NYFRMYEKL-AGMTG---TADTEAEEFREIYNLDVVVIPTNRPMIRI-DHPD----LIYKTEKEKFDAVVEDIKERHKKG 430 (830)
T ss_pred HHHHhcchh-cccCC---CcHHHHHHHHHHhCCCEEEcCCCCCeeee-eCCC----eEEECHHHHHHHHHHHHHHHHhcC
Confidence 0 1111 11111 11223345555555444432211100000 0000 001123568899999998888899
Q ss_pred CeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCcc--------
Q 000684 510 HRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATA-------- 581 (1352)
Q Consensus 510 ~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~A-------- 581 (1352)
..|||||......+.|..+|...|+++..|+|. ..+|...|..|... ...++|+|+.+|+|+|+.-.
T Consensus 431 rpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~---~g~VtIATNmAGRGtDI~LgGn~~~~~~ 505 (830)
T PRK12904 431 QPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGR---PGAVTIATNMAGRGTDIKLGGNPEMLAA 505 (830)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCC---CceEEEecccccCCcCccCCCchhhhhh
Confidence 999999999999999999999999999999995 77899999999863 34699999999999997643
Q ss_pred ------------------------------CEEEEcCCCCChhhHHHHhhhhcccCCCceEEEE
Q 000684 582 ------------------------------DTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIY 615 (1352)
Q Consensus 582 ------------------------------dtVIi~DsdWNP~~dlQAigRahRiGQkk~V~Vy 615 (1352)
=+||.-.-+-|-..|.|..||++|.|.......|
T Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~ 569 (830)
T PRK12904 506 ALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFY 569 (830)
T ss_pred hhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEE
Confidence 2788888899999999999999999999776554
No 106
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.54 E-value=1.2e-12 Score=161.51 Aligned_cols=95 Identities=20% Similarity=0.213 Sum_probs=76.3
Q ss_pred HHHHHHHHHhc--CCcEEEEeCCCCHHHH--HHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEEEEcCCCC---C--
Q 000684 522 LDILAEYMSYK--GFQFQRLDGSTKAELR--HQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDW---N-- 592 (1352)
Q Consensus 522 ldiL~d~L~~~--g~~~~rldGs~~~~eR--~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdW---N-- 592 (1352)
.+.+++.|... +.++.++|++++...+ ..+++.|.++.. -+|+.|.....|+|+..++.|+++|.|- .
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~---~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd 347 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKA---DILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPD 347 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCC---CEEEeCcccccCCCCCcccEEEEEcCcccccCcc
Confidence 46677777655 8899999999887655 889999998433 4899999999999999999998877763 2
Q ss_pred -------hhhHHHHhhhhcccCCCceEEEEEEec
Q 000684 593 -------PQNDLQAMSRAHRIGQQEVVNIYRFVT 619 (1352)
Q Consensus 593 -------P~~dlQAigRahRiGQkk~V~VyrLvt 619 (1352)
.+.+.|+.||++|-+....|.|..+-.
T Consensus 348 ~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p 381 (505)
T TIGR00595 348 FRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNP 381 (505)
T ss_pred cchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCC
Confidence 367899999999988887776554433
No 107
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.50 E-value=8.2e-12 Score=159.61 Aligned_cols=321 Identities=18% Similarity=0.253 Sum_probs=212.1
Q ss_pred CCCcHHHHHHHHHHHHHhcCCC--cEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhH-HHHHHHHHHHcCC
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDT--NVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTL-SNWAKEFRKWLPT 251 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~--~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L-~nW~~Ef~kw~p~ 251 (1352)
.+-.|-|+.+++-...=..++. .-+||-++|.|||=.|+-.+-. .-...+-+.|+||+.+| .|-.+.|..-+-+
T Consensus 593 yeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFk---AV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~ 669 (1139)
T COG1197 593 YEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFK---AVMDGKQVAVLVPTTLLAQQHYETFKERFAG 669 (1139)
T ss_pred CcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHH---HhcCCCeEEEEcccHHhHHHHHHHHHHHhcC
Confidence 5678889999999987776665 5589999999999887632211 11122568999999998 5555666655545
Q ss_pred C--eEEEE---EcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCCcchHHHH
Q 000684 252 M--NVIVY---VGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYT 326 (1352)
Q Consensus 252 l--~vvvy---~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN~~Skl~~ 326 (1352)
+ +|-+. .+.++.+..+... ..++.||||-|+..+.++..+ .+-.+|||||=||+.-. .-.
T Consensus 670 fPV~I~~LSRF~s~kE~~~il~~l---------a~G~vDIvIGTHrLL~kdv~F---kdLGLlIIDEEqRFGVk---~KE 734 (1139)
T COG1197 670 FPVRIEVLSRFRSAKEQKEILKGL---------AEGKVDIVIGTHRLLSKDVKF---KDLGLLIIDEEQRFGVK---HKE 734 (1139)
T ss_pred CCeeEEEecccCCHHHHHHHHHHH---------hcCCccEEEechHhhCCCcEE---ecCCeEEEechhhcCcc---HHH
Confidence 4 33333 3344444444332 456899999999998877554 24589999999999543 335
Q ss_pred HHHccccc-CeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhHhhhc
Q 000684 327 TLSEFSTK-NKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIKDVEK 405 (1352)
Q Consensus 327 aL~~l~~~-~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~dv~~ 405 (1352)
.|++++++ ..|-|||||++..|.= +|. + +..|.-+
T Consensus 735 kLK~Lr~~VDvLTLSATPIPRTL~M--sm~-----G----------------------iRdlSvI--------------- 770 (1139)
T COG1197 735 KLKELRANVDVLTLSATPIPRTLNM--SLS-----G----------------------IRDLSVI--------------- 770 (1139)
T ss_pred HHHHHhccCcEEEeeCCCCcchHHH--HHh-----c----------------------chhhhhc---------------
Confidence 66777654 5688999999876540 000 0 0000000
Q ss_pred cCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCchhhH
Q 000684 406 SLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDTSKL 485 (1352)
Q Consensus 406 ~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~~~l 485 (1352)
.-||....-|..-+.+..
T Consensus 771 ~TPP~~R~pV~T~V~~~d-------------------------------------------------------------- 788 (1139)
T COG1197 771 ATPPEDRLPVKTFVSEYD-------------------------------------------------------------- 788 (1139)
T ss_pred cCCCCCCcceEEEEecCC--------------------------------------------------------------
Confidence 123332222211111100
Q ss_pred HHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhc--CCcEEEEeCCCCHHHHHHHHHHhcCCCCCCc
Q 000684 486 ERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYK--GFQFQRLDGSTKAELRHQAMDHFNAPGSEDF 563 (1352)
Q Consensus 486 ~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~--g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~ 563 (1352)
-..+=+.++.++ .+|..|....+-+..+.-+...|+.. ...+...||.|+..+-+.++..|.+. .+
T Consensus 789 --------~~~ireAI~REl-~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g---~~ 856 (1139)
T COG1197 789 --------DLLIREAILREL-LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNG---EY 856 (1139)
T ss_pred --------hHHHHHHHHHHH-hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcC---CC
Confidence 000111233333 35556777777777788888888754 56788899999999999999999984 44
Q ss_pred EEEeecCCCccCCCCCccCEEEEcCCC-CChhhHHHHhhhhcccCCCceEEEEEEecCCCHHHHHHHHHHHHHh
Q 000684 564 CFLLSTRAGGLGINLATADTVIIFDSD-WNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMV 636 (1352)
Q Consensus 564 vfLLSTrAgg~GINL~~AdtVIi~Dsd-WNP~~dlQAigRahRiGQkk~V~VyrLvt~~TiEE~Il~ra~~K~~ 636 (1352)
-+||||.....|||+++|||+|+-+.| +--...-|--||++|-.+ .-+-|-|+..+ ..|-+.+.+.+.
T Consensus 857 dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~--~AYAYfl~p~~---k~lT~~A~kRL~ 925 (1139)
T COG1197 857 DVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNK--QAYAYFLYPPQ---KALTEDAEKRLE 925 (1139)
T ss_pred CEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccc--eEEEEEeecCc---cccCHHHHHHHH
Confidence 599999999999999999999999988 677788899999999654 56667777653 334444555544
No 108
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.49 E-value=2.3e-11 Score=136.04 Aligned_cols=312 Identities=17% Similarity=0.225 Sum_probs=209.3
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEECh-hhHHHHHHHHHHHcCCC
Q 000684 174 GGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPL-STLSNWAKEFRKWLPTM 252 (1352)
Q Consensus 174 ~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~-s~L~nW~~Ef~kw~p~l 252 (1352)
+|+|.++|..+.+-++..+.+....|+-.-+|.|||-+....+....+. .+.+.|..|- .++-.-...+..-+++.
T Consensus 95 ~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~---G~~vciASPRvDVclEl~~Rlk~aF~~~ 171 (441)
T COG4098 95 KGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQ---GGRVCIASPRVDVCLELYPRLKQAFSNC 171 (441)
T ss_pred ccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhc---CCeEEEecCcccchHHHHHHHHHhhccC
Confidence 6899999999999999999999999999999999999888777777654 4678888886 56666666777777888
Q ss_pred eEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccC-CcchHHHHHHHcc
Q 000684 253 NVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLK-NSEAQLYTTLSEF 331 (1352)
Q Consensus 253 ~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlK-N~~Skl~~aL~~l 331 (1352)
.+.+.+|+..+.- ...++|+|-..+++-.. .||+|||||.+-+- ..+-.++.+++.-
T Consensus 172 ~I~~Lyg~S~~~f-----------------r~plvVaTtHQLlrFk~-----aFD~liIDEVDAFP~~~d~~L~~Av~~a 229 (441)
T COG4098 172 DIDLLYGDSDSYF-----------------RAPLVVATTHQLLRFKQ-----AFDLLIIDEVDAFPFSDDQSLQYAVKKA 229 (441)
T ss_pred CeeeEecCCchhc-----------------cccEEEEehHHHHHHHh-----hccEEEEeccccccccCCHHHHHHHHHh
Confidence 8988888765321 23455555555555444 36999999999873 2344566666654
Q ss_pred c--ccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcch-hhhhhhHhhhccCC
Q 000684 332 S--TKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPH-ILRRIIKDVEKSLP 408 (1352)
Q Consensus 332 ~--~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~-~LRR~k~dv~~~LP 408 (1352)
. ....+.|||||-.. | .... ++..+.+. +-+|. -.+.||
T Consensus 230 rk~~g~~IylTATp~k~----l------------------~r~~-------------~~g~~~~~klp~Rf---H~~pLp 271 (441)
T COG4098 230 RKKEGATIYLTATPTKK----L------------------ERKI-------------LKGNLRILKLPARF---HGKPLP 271 (441)
T ss_pred hcccCceEEEecCChHH----H------------------HHHh-------------hhCCeeEeecchhh---cCCCCC
Confidence 3 34579999999311 1 0000 00000000 00110 011222
Q ss_pred CcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCchhhHHHH
Q 000684 409 PKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDTSKLERI 488 (1352)
Q Consensus 409 pk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~~~l~~l 488 (1352)
-.....+. .. ...
T Consensus 272 vPkf~w~~----~~---------------------------------------------------------------~k~ 284 (441)
T COG4098 272 VPKFVWIG----NW---------------------------------------------------------------NKK 284 (441)
T ss_pred CCceEEec----cH---------------------------------------------------------------HHH
Confidence 22221110 00 000
Q ss_pred hhhcchhH-HHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeC-CCCHHHHHHHHHHhcCCCCCCcEEE
Q 000684 489 ILSSGKLV-ILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDG-STKAELRHQAMDHFNAPGSEDFCFL 566 (1352)
Q Consensus 489 i~~SgKl~-~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldG-s~~~~eR~~~Id~Fn~~~s~~~vfL 566 (1352)
+ .-+|+. .|...|++....|..||||.....+++-+...|+. ++.+..+.. ......|.+.+.+|.+ +.+-+|
T Consensus 285 l-~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~-~~~~~~i~~Vhs~d~~R~EkV~~fR~---G~~~lL 359 (441)
T COG4098 285 L-QRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKK-KLPKETIASVHSEDQHRKEKVEAFRD---GKITLL 359 (441)
T ss_pred h-hhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHh-hCCccceeeeeccCccHHHHHHHHHc---CceEEE
Confidence 0 112333 46677888888999999999999999999999853 344444322 2234569999999998 456699
Q ss_pred eecCCCccCCCCCccCEEEEcCCC--CChhhHHHHhhhhcccCCCceEEEEEEecC
Q 000684 567 LSTRAGGLGINLATADTVIIFDSD--WNPQNDLQAMSRAHRIGQQEVVNIYRFVTS 620 (1352)
Q Consensus 567 LSTrAgg~GINL~~AdtVIi~Dsd--WNP~~dlQAigRahRiGQkk~V~VyrLvt~ 620 (1352)
++|....+|+.++..|++++=.-. ++-+..+|.-||++|--..-.-.|+.|-.-
T Consensus 360 iTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G 415 (441)
T COG4098 360 ITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYG 415 (441)
T ss_pred EEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEecc
Confidence 999999999999999999986544 899999999999999865444444444433
No 109
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.47 E-value=9.1e-13 Score=154.55 Aligned_cols=314 Identities=20% Similarity=0.265 Sum_probs=207.7
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHH-HHHHHHHHHhcCCCCcEEEEEChhhH-HHHHHHHHHHcCC-
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQS-VSMLGFLQNAQQIPGPFLVVVPLSTL-SNWAKEFRKWLPT- 251 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqa-Ia~l~~L~~~~~~~gp~LIVvP~s~L-~nW~~Ef~kw~p~- 251 (1352)
.+|.|-|.-+|..-+ -.|.|-++...+++|||+++ +|-+..+.. ..+.+|.+||+-.| .|=.++|..-+..
T Consensus 215 ~eLlPVQ~laVe~GL---LeG~nllVVSaTasGKTLIgElAGi~~~l~---~g~KmlfLvPLVALANQKy~dF~~rYs~L 288 (830)
T COG1202 215 EELLPVQVLAVEAGL---LEGENLLVVSATASGKTLIGELAGIPRLLS---GGKKMLFLVPLVALANQKYEDFKERYSKL 288 (830)
T ss_pred ceecchhhhhhhhcc---ccCCceEEEeccCCCcchHHHhhCcHHHHh---CCCeEEEEehhHHhhcchHHHHHHHhhcc
Confidence 489999999986533 37899999999999999974 555555544 35689999999877 4555678766543
Q ss_pred -CeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHH---HhhHhhhhccCcceEecchhcccCCc--chHH-
Q 000684 252 -MNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVV---LKDKAVLSKIKWNYLMVDEAHRLKNS--EAQL- 324 (1352)
Q Consensus 252 -l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l---~~d~~~L~~i~w~~lIVDEAHrlKN~--~Skl- 324 (1352)
+.+.+-.|...-+..- ...........||++-||+-+ ++....+. +...|||||.|.|... ...+
T Consensus 289 glkvairVG~srIk~~~------~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lg--diGtVVIDEiHtL~deERG~RLd 360 (830)
T COG1202 289 GLKVAIRVGMSRIKTRE------EPVVVDTSPDADIIVGTYEGIDYLLRTGKDLG--DIGTVVIDEIHTLEDEERGPRLD 360 (830)
T ss_pred cceEEEEechhhhcccC------CccccCCCCCCcEEEeechhHHHHHHcCCccc--ccceEEeeeeeeccchhcccchh
Confidence 4555555654322210 001123456899999999865 33333333 4589999999999652 2222
Q ss_pred --HHHHHcc-cccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhH
Q 000684 325 --YTTLSEF-STKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIK 401 (1352)
Q Consensus 325 --~~aL~~l-~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~ 401 (1352)
..-|+.+ .....+.||||- .|+.||..-|..-.. .|.
T Consensus 361 GLI~RLr~l~~~AQ~i~LSATV--gNp~elA~~l~a~lV-----------~y~--------------------------- 400 (830)
T COG1202 361 GLIGRLRYLFPGAQFIYLSATV--GNPEELAKKLGAKLV-----------LYD--------------------------- 400 (830)
T ss_pred hHHHHHHHhCCCCeEEEEEeec--CChHHHHHHhCCeeE-----------eec---------------------------
Confidence 2233333 335568888885 455555443321000 000
Q ss_pred hhhccCC-CcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCC
Q 000684 402 DVEKSLP-PKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSIN 480 (1352)
Q Consensus 402 dv~~~LP-pk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~ 480 (1352)
.-| |...+++++.=.
T Consensus 401 ----~RPVplErHlvf~~~e------------------------------------------------------------ 416 (830)
T COG1202 401 ----ERPVPLERHLVFARNE------------------------------------------------------------ 416 (830)
T ss_pred ----CCCCChhHeeeeecCc------------------------------------------------------------
Confidence 011 111222222100
Q ss_pred chhhHHHHhhhcchhHHHHHHHHHhh----hcC--CeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHH
Q 000684 481 DTSKLERIILSSGKLVILDKLLVRLH----ETK--HRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDH 554 (1352)
Q Consensus 481 ~~~~l~~li~~SgKl~~L~kLL~~l~----~~g--~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~ 554 (1352)
+.|..++.+|.+.-. ..| ..+|||+...+-...|+++|..+|++..-+|++++..+|+.+-..
T Consensus 417 -----------~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~ 485 (830)
T COG1202 417 -----------SEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERA 485 (830)
T ss_pred -----------hHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHH
Confidence 112222222222111 112 368999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCcEEEeecCCCccCCCCCccCEEEE----cCCCC-ChhhHHHHhhhhcccCCCceEEEEEEecCC
Q 000684 555 FNAPGSEDFCFLLSTRAGGLGINLATADTVII----FDSDW-NPQNDLQAMSRAHRIGQQEVVNIYRFVTSK 621 (1352)
Q Consensus 555 Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi----~DsdW-NP~~dlQAigRahRiGQkk~V~VyrLvt~~ 621 (1352)
|.+ .....+++|-|.|.|+|++ |+.||| +-.+| +|+.+.|..|||+|.|-...-.||-++..+
T Consensus 486 F~~---q~l~~VVTTAAL~AGVDFP-ASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 486 FAA---QELAAVVTTAALAAGVDFP-ASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred Hhc---CCcceEeehhhhhcCCCCc-hHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 987 4456899999999999999 455554 44566 999999999999999988777889888765
No 110
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=1.3e-12 Score=148.57 Aligned_cols=320 Identities=22% Similarity=0.282 Sum_probs=207.2
Q ss_pred CCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHH-HHHHHHHHhcCCCCcEEEEEChhhHH-HHHHHHHHHcCCCe
Q 000684 176 KLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSV-SMLGFLQNAQQIPGPFLVVVPLSTLS-NWAKEFRKWLPTMN 253 (1352)
Q Consensus 176 ~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaI-a~l~~L~~~~~~~gp~LIVvP~s~L~-nW~~Ef~kw~p~l~ 253 (1352)
++...|..|+--++ +|.+++.-...|+|||.+-. +++..+ .......-+||++|...|. |-..-...+...++
T Consensus 48 kPSaIQqraI~p~i----~G~dv~~qaqsgTgKt~af~i~iLq~i-D~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~ 122 (397)
T KOG0327|consen 48 KPSAIQQRAILPCI----KGHDVIAQAQSGTGKTAAFLISILQQI-DMSVKETQALILAPTRELAQQIQKVVRALGDHMD 122 (397)
T ss_pred CchHHHhccccccc----cCCceeEeeeccccchhhhHHHHHhhc-CcchHHHHHHHhcchHHHHHHHHHHHHhhhcccc
Confidence 44556777776665 78999999999999999832 222221 1111122369999998884 44445555555554
Q ss_pred --EEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHh--hHhhhhccCcceEecchhcccCC--cchHHHHH
Q 000684 254 --VIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLK--DKAVLSKIKWNYLMVDEAHRLKN--SEAQLYTT 327 (1352)
Q Consensus 254 --vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~--d~~~L~~i~w~~lIVDEAHrlKN--~~Skl~~a 327 (1352)
+....|...-+..... ......+|++.|+..+.. +...|..-...+.|+|||..++. ...+++..
T Consensus 123 ~~v~~~igg~~~~~~~~~---------i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~i 193 (397)
T KOG0327|consen 123 VSVHACIGGTNVRREDQA---------LLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDI 193 (397)
T ss_pred eeeeeecCcccchhhhhh---------hhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHH
Confidence 4433443332211111 123467899999976653 23355556678999999999854 45567777
Q ss_pred HHcccccC-eEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhHhhhcc
Q 000684 328 LSEFSTKN-KLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIKDVEKS 406 (1352)
Q Consensus 328 L~~l~~~~-rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~dv~~~ 406 (1352)
...+..+- .++++||-- .++ ....+.|.. .|..+-+.|
T Consensus 194 f~~lp~~vQv~l~SAT~p----~~v---------------l~vt~~f~~----------------~pv~i~vkk------ 232 (397)
T KOG0327|consen 194 FQELPSDVQVVLLSATMP----SDV---------------LEVTKKFMR----------------EPVRILVKK------ 232 (397)
T ss_pred HHHcCcchhheeecccCc----HHH---------------HHHHHHhcc----------------CceEEEecc------
Confidence 77765544 366677731 000 000011100 000000000
Q ss_pred CCCcEEEEEEecCC-HHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCchhhH
Q 000684 407 LPPKIERILRVEMS-PLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDTSKL 485 (1352)
Q Consensus 407 LPpk~e~iv~v~Ls-~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~~~l 485 (1352)
.++| .-|+++|-. ..
T Consensus 233 ----------~~ltl~gikq~~i~-------------------------------------------------v~----- 248 (397)
T KOG0327|consen 233 ----------DELTLEGIKQFYIN-------------------------------------------------VE----- 248 (397)
T ss_pred ----------hhhhhhheeeeeee-------------------------------------------------cc-----
Confidence 0011 000011000 00
Q ss_pred HHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEE
Q 000684 486 ERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCF 565 (1352)
Q Consensus 486 ~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vf 565 (1352)
...|+..|..+.. .-...+||++..+-++.|.+.|..+|+....++|.+.+.+|..++..|+.+.+. +
T Consensus 249 -----k~~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssr---v 316 (397)
T KOG0327|consen 249 -----KEEKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSR---V 316 (397)
T ss_pred -----ccccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCce---E
Confidence 0117777777776 334589999999999999999999999999999999999999999999986554 8
Q ss_pred EeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCCCHHHHHHHH
Q 000684 566 LLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILER 630 (1352)
Q Consensus 566 LLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~TiEE~Il~r 630 (1352)
|++|...+.||+++.++.||+||.|-|.++|++++||++|.|.+..+ ..++++. +++++..
T Consensus 317 lIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~--in~v~~~--d~~~lk~ 377 (397)
T KOG0327|consen 317 LITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVA--INFVTEE--DVRDLKD 377 (397)
T ss_pred EeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCcee--eeeehHh--hHHHHHh
Confidence 99999999999999999999999999999999999999999987544 5677765 3444443
No 111
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.47 E-value=2.5e-12 Score=162.17 Aligned_cols=120 Identities=16% Similarity=0.146 Sum_probs=106.8
Q ss_pred hcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecC
Q 000684 491 SSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTR 570 (1352)
Q Consensus 491 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTr 570 (1352)
...|...+.+-+..+++.|..|||||..+...+.|..+|...|+++..|++.....+|..+.+.|+.+ .++|+|.
T Consensus 431 ~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G-----~VtIATn 505 (908)
T PRK13107 431 ADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTG-----AVTIATN 505 (908)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCC-----cEEEecC
Confidence 45688888888889999999999999999999999999999999999999999999999999999873 2899999
Q ss_pred CCccCCCCCcc-------------------------------------CEEEEcCCCCChhhHHHHhhhhcccCCCceEE
Q 000684 571 AGGLGINLATA-------------------------------------DTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVN 613 (1352)
Q Consensus 571 Agg~GINL~~A-------------------------------------dtVIi~DsdWNP~~dlQAigRahRiGQkk~V~ 613 (1352)
.+|+|+|+.-. =+||.-.-.-|-..|.|..|||+|.|......
T Consensus 506 mAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~ 585 (908)
T PRK13107 506 MAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSR 585 (908)
T ss_pred CcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCcee
Confidence 99999997522 27888899999999999999999999987654
Q ss_pred EE
Q 000684 614 IY 615 (1352)
Q Consensus 614 Vy 615 (1352)
.|
T Consensus 586 f~ 587 (908)
T PRK13107 586 FY 587 (908)
T ss_pred EE
Confidence 44
No 112
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.46 E-value=6.7e-13 Score=141.82 Aligned_cols=157 Identities=30% Similarity=0.352 Sum_probs=111.5
Q ss_pred CCCCcHHHHHHHHHHHHHhcCC-CcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEECh-hhHHHHHHHHHHHcCC
Q 000684 174 GGKLRDYQLEGLNFLVNSWRND-TNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPL-STLSNWAKEFRKWLPT 251 (1352)
Q Consensus 174 ~~~Lr~yQlegvnwL~~~~~~~-~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~-s~L~nW~~Ef~kw~p~ 251 (1352)
..+++++|.+++..+. .. .++++..++|+|||..++.++........ .+++|||+|. ++..+|..++..+++.
T Consensus 6 ~~~~~~~Q~~~~~~~~----~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~~~~~~~~~~~ 80 (201)
T smart00487 6 FEPLRPYQKEAIEALL----SGLRDVILAAPTGSGKTLAALLPALEALKRGK-GKRVLVLVPTRELAEQWAEELKKLGPS 80 (201)
T ss_pred CCCCCHHHHHHHHHHH----cCCCcEEEECCCCCchhHHHHHHHHHHhcccC-CCcEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4689999999999887 34 78999999999999987776665554322 4679999995 5669999999999876
Q ss_pred C---eEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhh--hhccCcceEecchhcccCC-cc-hHH
Q 000684 252 M---NVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAV--LSKIKWNYLMVDEAHRLKN-SE-AQL 324 (1352)
Q Consensus 252 l---~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~--L~~i~w~~lIVDEAHrlKN-~~-Skl 324 (1352)
. ....+.+... ....... .....+++++||+.+...... +....+++|||||||.+.+ .. ...
T Consensus 81 ~~~~~~~~~~~~~~-~~~~~~~---------~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~ 150 (201)
T smart00487 81 LGLKVVGLYGGDSK-REQLRKL---------ESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQL 150 (201)
T ss_pred CCeEEEEEeCCcch-HHHHHHH---------hcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHH
Confidence 2 3334444332 2222211 111248999999998876554 4455788999999999985 33 333
Q ss_pred HHHHHcc-cccCeEEEeccCCC
Q 000684 325 YTTLSEF-STKNKLLITGTPLQ 345 (1352)
Q Consensus 325 ~~aL~~l-~~~~rlLLTGTPlq 345 (1352)
...+..+ ...+++++||||..
T Consensus 151 ~~~~~~~~~~~~~v~~saT~~~ 172 (201)
T smart00487 151 EKLLKLLPKNVQLLLLSATPPE 172 (201)
T ss_pred HHHHHhCCccceEEEEecCCch
Confidence 3444444 46778999999963
No 113
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.45 E-value=3e-12 Score=164.54 Aligned_cols=314 Identities=18% Similarity=0.192 Sum_probs=216.2
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEECh-hhHHHHHHHHHHHcCCCe
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPL-STLSNWAKEFRKWLPTMN 253 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~-s~L~nW~~Ef~kw~p~l~ 253 (1352)
...||-|.++|+-.+ .|..+.+-..+|-||.+.- -+-..-..|-+|||.|+ |++.-....+.. .++.
T Consensus 263 ~~FR~~Q~eaI~~~l----~Gkd~fvlmpTG~GKSLCY------QlPA~l~~gitvVISPL~SLm~DQv~~L~~--~~I~ 330 (941)
T KOG0351|consen 263 KGFRPNQLEAINATL----SGKDCFVLMPTGGGKSLCY------QLPALLLGGVTVVISPLISLMQDQVTHLSK--KGIP 330 (941)
T ss_pred ccCChhHHHHHHHHH----cCCceEEEeecCCceeeEe------eccccccCCceEEeccHHHHHHHHHHhhhh--cCcc
Confidence 479999999999554 7899999999999999742 00011123568999998 666433333322 3566
Q ss_pred EEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhh---cc-C---cceEecchhcccCCc------
Q 000684 254 VIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLS---KI-K---WNYLMVDEAHRLKNS------ 320 (1352)
Q Consensus 254 vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~---~i-~---w~~lIVDEAHrlKN~------ 320 (1352)
...+.+..........+..... .....+++-.|+|.+......+. .. . ..++||||||-....
T Consensus 331 a~~L~s~q~~~~~~~i~q~l~~----~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp 406 (941)
T KOG0351|consen 331 ACFLSSIQTAAERLAILQKLAN----GNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRP 406 (941)
T ss_pred eeeccccccHHHHHHHHHHHhC----CCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccH
Confidence 6677777666543333332221 23478999999999986543321 11 2 589999999988542
Q ss_pred -chHHHHHHHcccccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhh
Q 000684 321 -EAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRI 399 (1352)
Q Consensus 321 -~Skl~~aL~~l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~ 399 (1352)
..++......+..-..+.||||--..--.++...|+.-+|..|.+. |
T Consensus 407 ~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s------f-------------------------- 454 (941)
T KOG0351|consen 407 SYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSS------F-------------------------- 454 (941)
T ss_pred HHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceeccc------C--------------------------
Confidence 2333333344445566899999766666667666666666544321 1
Q ss_pred hHhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCC
Q 000684 400 IKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSI 479 (1352)
Q Consensus 400 k~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~ 479 (1352)
.++....-|....+ ...++.++...+
T Consensus 455 -------nR~NL~yeV~~k~~-------------------------~~~~~~~~~~~~---------------------- 480 (941)
T KOG0351|consen 455 -------NRPNLKYEVSPKTD-------------------------KDALLDILEESK---------------------- 480 (941)
T ss_pred -------CCCCceEEEEeccC-------------------------ccchHHHHHHhh----------------------
Confidence 11111111111110 011111211111
Q ss_pred CchhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCC
Q 000684 480 NDTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPG 559 (1352)
Q Consensus 480 ~~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~ 559 (1352)
....+.-.||||....+.+.++..|...|+....+|++++..+|+.+-..|...
T Consensus 481 -------------------------~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~- 534 (941)
T KOG0351|consen 481 -------------------------LRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSD- 534 (941)
T ss_pred -------------------------hcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcC-
Confidence 123455789999999999999999999999999999999999999999999983
Q ss_pred CCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEe
Q 000684 560 SEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFV 618 (1352)
Q Consensus 560 s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLv 618 (1352)
.+.+++.|=|.|.|||-.++..||.|..+-+-.-|.|..|||+|-|+...+..|.=.
T Consensus 535 --~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~ 591 (941)
T KOG0351|consen 535 --KIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGY 591 (941)
T ss_pred --CCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecch
Confidence 467999999999999999999999999999999999999999999999777665433
No 114
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.44 E-value=4.9e-11 Score=150.92 Aligned_cols=134 Identities=18% Similarity=0.250 Sum_probs=112.5
Q ss_pred hcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecC
Q 000684 491 SSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTR 570 (1352)
Q Consensus 491 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTr 570 (1352)
..+++..|.+-|....+.|.+|||||....+++.|.++|...|+++..++|.++..+|..++..|.. +.+.+|++|.
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~---G~i~VLV~t~ 500 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRL---GEFDVLVGIN 500 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhc---CCceEEEEcC
Confidence 3567777777777778899999999999999999999999999999999999999999999999987 4466899999
Q ss_pred CCccCCCCCccCEEEEcCC-----CCChhhHHHHhhhhcccCCCceEEEEEEecCCC--HHHHHHHH
Q 000684 571 AGGLGINLATADTVIIFDS-----DWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKS--VEEDILER 630 (1352)
Q Consensus 571 Agg~GINL~~AdtVIi~Ds-----dWNP~~dlQAigRahRiGQkk~V~VyrLvt~~T--iEE~Il~r 630 (1352)
..+.|++++.++.||++|. +-+...++|++||++|.. .. .|+.|+...| +...|.+.
T Consensus 501 ~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~-~G--~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 501 LLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NG--KVIMYADKITDSMQKAIEET 564 (655)
T ss_pred hhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC-CC--EEEEEEcCCCHHHHHHHHHH
Confidence 9999999999999999994 457889999999999974 33 3455666554 44444443
No 115
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.44 E-value=2.3e-13 Score=125.60 Aligned_cols=78 Identities=31% Similarity=0.594 Sum_probs=73.6
Q ss_pred HHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhccc
Q 000684 527 EYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRI 606 (1352)
Q Consensus 527 d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRi 606 (1352)
.+|...|+.+..++|+++..+|+.+++.|+.+.. .+|++|.++++|||++.+++||+++++||+..+.|++||++|.
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEI---RVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSS---SEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCc---eEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCC
Confidence 3688899999999999999999999999998544 5899999999999999999999999999999999999999999
Q ss_pred C
Q 000684 607 G 607 (1352)
Q Consensus 607 G 607 (1352)
|
T Consensus 78 g 78 (78)
T PF00271_consen 78 G 78 (78)
T ss_dssp T
T ss_pred C
Confidence 8
No 116
>COG4889 Predicted helicase [General function prediction only]
Probab=99.43 E-value=1.3e-12 Score=158.05 Aligned_cols=164 Identities=18% Similarity=0.244 Sum_probs=106.8
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEECh-hhHHHHHHHHHHHc-CC
Q 000684 174 GGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPL-STLSNWAKEFRKWL-PT 251 (1352)
Q Consensus 174 ~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~-s~L~nW~~Ef~kw~-p~ 251 (1352)
..+|||||.++++-....+..+..|=|.+.+|+|||.+++-+...+.. ..+|.+||. ++|.|-.+|...-. -+
T Consensus 159 ~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~-----~~iL~LvPSIsLLsQTlrew~~~~~l~ 233 (1518)
T COG4889 159 PKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA-----ARILFLVPSISLLSQTLREWTAQKELD 233 (1518)
T ss_pred CCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh-----hheEeecchHHHHHHHHHHHhhccCcc
Confidence 469999999999999999998888999999999999999988877765 458999997 77777555433211 12
Q ss_pred CeEEEEEc-CchhHHHHHHHhhhc---------------cccCCCCccccEEEecHHHHHhh--HhhhhccCcceEecch
Q 000684 252 MNVIVYVG-TRASREVCQQYEFYN---------------DKKVGRPIKFNTLLTTYEVVLKD--KAVLSKIKWNYLMVDE 313 (1352)
Q Consensus 252 l~vvvy~G-~~~~r~~i~~~e~~~---------------~~~~~~~~kf~VlItTye~l~~d--~~~L~~i~w~~lIVDE 313 (1352)
+.....+. ++.+|. ..++.++. -....+..+.-||++||+.+..- .....--.|++||+||
T Consensus 234 ~~a~aVcSD~kvsrs-~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDE 312 (1518)
T COG4889 234 FRASAVCSDDKVSRS-AEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDE 312 (1518)
T ss_pred ceeEEEecCcccccc-ccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecc
Confidence 33332222 222221 11111100 00112344677999999988653 4445556899999999
Q ss_pred hcccCCc------chHHHHH--HHcccccCeEEEeccC
Q 000684 314 AHRLKNS------EAQLYTT--LSEFSTKNKLLITGTP 343 (1352)
Q Consensus 314 AHrlKN~------~Skl~~a--L~~l~~~~rlLLTGTP 343 (1352)
|||--+. .|...+. -..+++..||.+||||
T Consensus 313 AHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATP 350 (1518)
T COG4889 313 AHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATP 350 (1518)
T ss_pred hhccccceecccCcccceeecCcchhHHHHhhhcccCc
Confidence 9997431 1111111 1224566789999999
No 117
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.41 E-value=2.7e-12 Score=129.03 Aligned_cols=137 Identities=26% Similarity=0.317 Sum_probs=101.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhH-HHHHHHHHHHcC-CCeEEEEEcCchhHHHHHHHhhh
Q 000684 196 TNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTL-SNWAKEFRKWLP-TMNVIVYVGTRASREVCQQYEFY 273 (1352)
Q Consensus 196 ~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L-~nW~~Ef~kw~p-~l~vvvy~G~~~~r~~i~~~e~~ 273 (1352)
.++++...+|+|||.+++.++..+... ...+++||+||...+ .+|...+..+.. ...+.++.+..........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~-~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 75 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS-LKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKL---- 75 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc-ccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHH----
Confidence 368999999999999999998887765 345689999999877 555667777765 5777777776655443211
Q ss_pred ccccCCCCccccEEEecHHHHHhhHhhh--hccCcceEecchhcccCCcchHHH---HHHHcccccCeEEEeccC
Q 000684 274 NDKKVGRPIKFNTLLTTYEVVLKDKAVL--SKIKWNYLMVDEAHRLKNSEAQLY---TTLSEFSTKNKLLITGTP 343 (1352)
Q Consensus 274 ~~~~~~~~~kf~VlItTye~l~~d~~~L--~~i~w~~lIVDEAHrlKN~~Skl~---~aL~~l~~~~rlLLTGTP 343 (1352)
.....+++++||+.+....... ....|++|||||+|.+.+...... ...........+++||||
T Consensus 76 ------~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 76 ------LSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred ------hcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 1236789999999887654432 244799999999999988765543 344456777889999998
No 118
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=99.39 E-value=5.7e-12 Score=144.77 Aligned_cols=219 Identities=23% Similarity=0.278 Sum_probs=133.5
Q ss_pred EEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCc--------------hhhHHHHHHHHHHhcCCccccccccCCCCCC
Q 000684 411 IERILRVEMSPLQKQYYKWILERNFHDLNKGVRGN--------------QVSLLNIVVELKKCCNHPFLFESADHGYGGD 476 (1352)
Q Consensus 411 ~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~--------------~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~ 476 (1352)
.++.+.++|+..|+++|..++.-.+..+.+...+. ...+...+.+|+.+|+||+|... ..-+.
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~Llvd--H~mPk- 80 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVD--HYMPK- 80 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT----TT--S-
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCcccccc--ccCcc-
Confidence 36789999999999999999987766553322111 13345567889999999999532 22111
Q ss_pred CCCCchhhHHHHhhhcchhHHHHHHHHHh-----hhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHH
Q 000684 477 TSINDTSKLERIILSSGKLVILDKLLVRL-----HETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQA 551 (1352)
Q Consensus 477 ~~~~~~~~l~~li~~SgKl~~L~kLL~~l-----~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~ 551 (1352)
.....+..+.++..|||+.+|..||..+ ...+.++||.++..+++|+|+.+|..+++.|.|++|..-..+....
T Consensus 81 -~ll~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~ 159 (297)
T PF11496_consen 81 -QLLLSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKV 159 (297)
T ss_dssp --S-STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S
T ss_pred -ccccchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccC
Confidence 1233445578889999999999999999 7778899999999999999999999999999999997655443322
Q ss_pred H------------HHhcCCCCCC-cEEEeecCCCcc----CCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEE
Q 000684 552 M------------DHFNAPGSED-FCFLLSTRAGGL----GINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNI 614 (1352)
Q Consensus 552 I------------d~Fn~~~s~~-~vfLLSTrAgg~----GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~V 614 (1352)
- ......++.. .++|++|.-... .++-...|.||-||+.+++....-..-|.+--.+ +.+-|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~-~~~Pi 238 (297)
T PF11496_consen 160 PKNGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN-RLCPI 238 (297)
T ss_dssp ----------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH--------S--E
T ss_pred CcccccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC-CCCcE
Confidence 2 1111222233 455555554333 2344568999999999999887544444443333 78999
Q ss_pred EEEecCCCHHHHHHHHHHHH
Q 000684 615 YRFVTSKSVEEDILERAKKK 634 (1352)
Q Consensus 615 yrLvt~~TiEE~Il~ra~~K 634 (1352)
+|||..+|+|--++......
T Consensus 239 irLv~~nSiEHi~L~~~~~~ 258 (297)
T PF11496_consen 239 IRLVPSNSIEHIELCFPKSS 258 (297)
T ss_dssp EEEEETTSHHHHHHHHTTTS
T ss_pred EEEeeCCCHHHHHHHccCcc
Confidence 99999999999888776644
No 119
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.39 E-value=3.6e-10 Score=143.95 Aligned_cols=125 Identities=18% Similarity=0.262 Sum_probs=108.4
Q ss_pred hcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecC
Q 000684 491 SSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTR 570 (1352)
Q Consensus 491 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTr 570 (1352)
..+++..|...|......|.+|||||.....++.|..+|...|+++..++|.++..+|..++..|.. +.+.+|++|.
T Consensus 428 ~~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~---g~i~vlV~t~ 504 (652)
T PRK05298 428 TKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRL---GEFDVLVGIN 504 (652)
T ss_pred ccccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHc---CCceEEEEeC
Confidence 3567777777777778899999999999999999999999999999999999999999999999986 3456899999
Q ss_pred CCccCCCCCccCEEEEcCCC-----CChhhHHHHhhhhcccCCCceEEEEEEecCC
Q 000684 571 AGGLGINLATADTVIIFDSD-----WNPQNDLQAMSRAHRIGQQEVVNIYRFVTSK 621 (1352)
Q Consensus 571 Agg~GINL~~AdtVIi~Dsd-----WNP~~dlQAigRahRiGQkk~V~VyrLvt~~ 621 (1352)
..+.|++++.+++||++|.+ -++..++|++||++|- .. -.++.|++..
T Consensus 505 ~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~--G~~i~~~~~~ 557 (652)
T PRK05298 505 LLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VN--GKVILYADKI 557 (652)
T ss_pred HHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CC--CEEEEEecCC
Confidence 99999999999999999974 5889999999999994 33 3356666643
No 120
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.38 E-value=5.4e-11 Score=150.72 Aligned_cols=117 Identities=16% Similarity=0.147 Sum_probs=104.4
Q ss_pred hcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecC
Q 000684 491 SSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTR 570 (1352)
Q Consensus 491 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTr 570 (1352)
...|+..|.+++..+...|..|||||+++...+.|..+|...|+++..|++ .+.+|++.|-.|... ...++|+|.
T Consensus 580 ~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~---~g~VtIATN 654 (1025)
T PRK12900 580 RREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQ---KGAVTIATN 654 (1025)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCC---CCeEEEecc
Confidence 356899999999999899999999999999999999999999999999997 678999999999863 346999999
Q ss_pred CCccCCCCCccC--------EEEEcCCCCChhhHHHHhhhhcccCCCceE
Q 000684 571 AGGLGINLATAD--------TVIIFDSDWNPQNDLQAMSRAHRIGQQEVV 612 (1352)
Q Consensus 571 Agg~GINL~~Ad--------tVIi~DsdWNP~~dlQAigRahRiGQkk~V 612 (1352)
.+|+|+|+.-.+ +||.++.+-+...|.|+.||++|.|.....
T Consensus 655 MAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS 704 (1025)
T PRK12900 655 MAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGES 704 (1025)
T ss_pred CcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcce
Confidence 999999998443 348889999999999999999999998766
No 121
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.35 E-value=3.6e-12 Score=145.50 Aligned_cols=315 Identities=20% Similarity=0.235 Sum_probs=211.6
Q ss_pred CCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHH-HHHHHHHHHHhcCCCCcEEEEEChhhH-HH---HHHHHHHHcC
Q 000684 176 KLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQ-SVSMLGFLQNAQQIPGPFLVVVPLSTL-SN---WAKEFRKWLP 250 (1352)
Q Consensus 176 ~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlq-aIa~l~~L~~~~~~~gp~LIVvP~s~L-~n---W~~Ef~kw~p 250 (1352)
+..|.|...++-++ .+..+.-..-+|.|||.. .|-.+..|....+..-..||+.|+.-| .| ...++.+++
T Consensus 43 ~ptpiqRKTipliL----e~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt- 117 (529)
T KOG0337|consen 43 TPTPIQRKTIPLIL----EGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGT- 117 (529)
T ss_pred CCCchhccccccee----eccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhcccc-
Confidence 56677777777665 567777777899999987 445666666544333468999998766 44 334444443
Q ss_pred CCeEE-EEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHh--hhhccCcceEecchhcccCC--cchHHH
Q 000684 251 TMNVI-VYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKA--VLSKIKWNYLMVDEAHRLKN--SEAQLY 325 (1352)
Q Consensus 251 ~l~vv-vy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~--~L~~i~w~~lIVDEAHrlKN--~~Skl~ 325 (1352)
++... .|+|+..+...+. . ....|||++|+..++--.. .|.--...|||+|||.+|-. ..-++.
T Consensus 118 ~lr~s~~~ggD~~eeqf~~----l-------~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgfqeql~ 186 (529)
T KOG0337|consen 118 KLRQSLLVGGDSIEEQFIL----L-------NENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQEQLH 186 (529)
T ss_pred chhhhhhcccchHHHHHHH----h-------ccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhhhHHHHH
Confidence 45555 5555654444322 1 1257899999987754221 23344578999999999954 456788
Q ss_pred HHHHccccc-CeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhHhhh
Q 000684 326 TTLSEFSTK-NKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIKDVE 404 (1352)
Q Consensus 326 ~aL~~l~~~-~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~dv~ 404 (1352)
+.+..+... ..+++|||-- +. | -+|... -+..|.++| -||+
T Consensus 187 e~l~rl~~~~QTllfSatlp-~~------l------------v~faka----------------Gl~~p~lVR---ldve 228 (529)
T KOG0337|consen 187 EILSRLPESRQTLLFSATLP-RD------L------------VDFAKA----------------GLVPPVLVR---LDVE 228 (529)
T ss_pred HHHHhCCCcceEEEEeccCc-hh------h------------HHHHHc----------------cCCCCceEE---eehh
Confidence 888888654 4588899841 11 1 111110 001111111 1111
Q ss_pred ccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCchhh
Q 000684 405 KSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDTSK 484 (1352)
Q Consensus 405 ~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~~~ 484 (1352)
. .+++. .+++.+
T Consensus 229 t------------kise~-------------------------------lk~~f~------------------------- 240 (529)
T KOG0337|consen 229 T------------KISEL-------------------------------LKVRFF------------------------- 240 (529)
T ss_pred h------------hcchh-------------------------------hhhhee-------------------------
Confidence 1 00000 001111
Q ss_pred HHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcE
Q 000684 485 LERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFC 564 (1352)
Q Consensus 485 l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~v 564 (1352)
.+....|...|..++..... .++.+||+.-...++.+...|...|+...-+.|++.+..|..-+.+|+.. ..-
T Consensus 241 ---~~~~a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~---k~~ 313 (529)
T KOG0337|consen 241 ---RVRKAEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGR---KTS 313 (529)
T ss_pred ---eeccHHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCC---ccc
Confidence 01122344555555544332 45799999999999999999999999999999999999999999999984 345
Q ss_pred EEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCC
Q 000684 565 FLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSK 621 (1352)
Q Consensus 565 fLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~ 621 (1352)
+|++|+.+.+|++++--|+||.||.+-.+..+.+|.||+.|.|.+.. .|-||+.+
T Consensus 314 ~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~--aYs~V~~~ 368 (529)
T KOG0337|consen 314 ILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGR--AYSLVAST 368 (529)
T ss_pred eEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccce--EEEEEecc
Confidence 89999999999999999999999999999999999999999998754 48888765
No 122
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.35 E-value=2e-10 Score=145.41 Aligned_cols=119 Identities=15% Similarity=0.187 Sum_probs=97.2
Q ss_pred hcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHH-HHHHHhcCCCCCCcEEEeec
Q 000684 491 SSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRH-QAMDHFNAPGSEDFCFLLST 569 (1352)
Q Consensus 491 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~-~~Id~Fn~~~s~~~vfLLST 569 (1352)
...|...+.+-+..+++.|..|||-+.++..-+.|..+|...|+++..|+..-. +++ .+|.. ++ ..-.+.|+|
T Consensus 550 ~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~--~~Ea~iia~--AG--~~g~VTIAT 623 (970)
T PRK12899 550 EREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH--AQEAEIIAG--AG--KLGAVTVAT 623 (970)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh--hhHHHHHHh--cC--CCCcEEEee
Confidence 357888888888888999999999999999999999999999999999988633 333 34443 22 223589999
Q ss_pred CCCccCCCCCcc--------CEEEEcCCCCChhhHHHHhhhhcccCCCceEEEE
Q 000684 570 RAGGLGINLATA--------DTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIY 615 (1352)
Q Consensus 570 rAgg~GINL~~A--------dtVIi~DsdWNP~~dlQAigRahRiGQkk~V~Vy 615 (1352)
..+|+|.|+.-. =+||....+-|...|.|..||++|.|.......|
T Consensus 624 NmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~ 677 (970)
T PRK12899 624 NMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFF 677 (970)
T ss_pred ccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEE
Confidence 999999887543 2788888999999999999999999998776544
No 123
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.34 E-value=7.2e-11 Score=155.87 Aligned_cols=109 Identities=14% Similarity=0.136 Sum_probs=88.6
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhcC---CcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEE
Q 000684 508 TKHRVLIFSQMVRMLDILAEYMSYKG---FQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTV 584 (1352)
Q Consensus 508 ~g~KVLIFSq~~~~ldiL~d~L~~~g---~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtV 584 (1352)
....||||......++.+.+.|...+ +.+..++|+++.++|+.+++.+. ...+||+|..++.||++...++|
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~-----~rkIVLATNIAEtSLTIpgV~yV 352 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPHS-----GRRIVLATNVAETSLTVPGIHYV 352 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCCC-----CceEEEeccHHHhccccCCeeEE
Confidence 34689999999999999999998764 45788999999999998865432 23589999999999999999999
Q ss_pred EEcCCC----C--------------ChhhHHHHhhhhcccCCCceEEEEEEecCCCHH
Q 000684 585 IIFDSD----W--------------NPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVE 624 (1352)
Q Consensus 585 Ii~Dsd----W--------------NP~~dlQAigRahRiGQkk~V~VyrLvt~~TiE 624 (1352)
|-++.. + +-....||.|||+|.| +-.+|||+++...+
T Consensus 353 IDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 353 IDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFN 407 (1283)
T ss_pred EeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHH
Confidence 987721 2 3357899999999998 45679999976554
No 124
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.33 E-value=1.3e-10 Score=152.97 Aligned_cols=109 Identities=14% Similarity=0.116 Sum_probs=88.0
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhcCCc---EEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEE
Q 000684 508 TKHRVLIFSQMVRMLDILAEYMSYKGFQ---FQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTV 584 (1352)
Q Consensus 508 ~g~KVLIFSq~~~~ldiL~d~L~~~g~~---~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtV 584 (1352)
....+|||+.....++.+.+.|...++. +.-++|+++.++|..+++.+ +...+||+|++++.||++.+.++|
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~-----g~rkIIVATNIAEtSITIpgI~yV 359 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH-----SGRRIVLATNVAETSLTVPGIKYV 359 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc-----CCeeEEEeccHHhhccccCcceEE
Confidence 4467999999999999999999987765 56789999999999887652 235689999999999999999999
Q ss_pred EEcCC---------------CCCh---hhHHHHhhhhcccCCCceEEEEEEecCCCHH
Q 000684 585 IIFDS---------------DWNP---QNDLQAMSRAHRIGQQEVVNIYRFVTSKSVE 624 (1352)
Q Consensus 585 Ii~Ds---------------dWNP---~~dlQAigRahRiGQkk~V~VyrLvt~~TiE 624 (1352)
|.++. +-.| ..+.||.|||+|.+ +-.+|+|+++..++
T Consensus 360 ID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~---~G~c~rLyte~d~~ 414 (1294)
T PRK11131 360 IDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS---EGICIRLYSEDDFL 414 (1294)
T ss_pred EECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC---CcEEEEeCCHHHHH
Confidence 98752 2222 57889999999983 45568999976543
No 125
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.31 E-value=5.3e-12 Score=116.21 Aligned_cols=81 Identities=33% Similarity=0.549 Sum_probs=75.7
Q ss_pred HHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhh
Q 000684 524 ILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRA 603 (1352)
Q Consensus 524 iL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRa 603 (1352)
.|.++|...++.+..++|.++..+|..+++.|+.+.. .+|++|.+++.|+|++.+++||+++++||+..+.|++||+
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI---KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC---eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 4678888889999999999999999999999998543 6899999999999999999999999999999999999999
Q ss_pred cccC
Q 000684 604 HRIG 607 (1352)
Q Consensus 604 hRiG 607 (1352)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9987
No 126
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.31 E-value=7e-10 Score=137.41 Aligned_cols=390 Identities=17% Similarity=0.176 Sum_probs=216.2
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhH----HHHHHHHHHHc
Q 000684 174 GGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTL----SNWAKEFRKWL 249 (1352)
Q Consensus 174 ~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L----~nW~~Ef~kw~ 249 (1352)
|...++-|+-|..-|. .|-|.-..||-|||+++...+...... ...+-||+|+..| .+|...+-.++
T Consensus 76 g~r~ydvQlig~l~Ll------~G~VaEM~TGEGKTLvA~l~a~l~AL~---G~~VhvvT~NdyLA~RDae~m~~ly~~L 146 (764)
T PRK12326 76 GLRPFDVQLLGALRLL------AGDVIEMATGEGKTLAGAIAAAGYALQ---GRRVHVITVNDYLARRDAEWMGPLYEAL 146 (764)
T ss_pred CCCcchHHHHHHHHHh------CCCcccccCCCCHHHHHHHHHHHHHHc---CCCeEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 5678888999998776 456888889999999875443322222 2457899999988 45777777776
Q ss_pred CCCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHH----Hhh-----HhhhhccCcceEecchhcccCCc
Q 000684 250 PTMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVV----LKD-----KAVLSKIKWNYLMVDEAHRLKNS 320 (1352)
Q Consensus 250 p~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l----~~d-----~~~L~~i~w~~lIVDEAHrlKN~ 320 (1352)
++.|.+..+..........| .++|+-+|-.-+ ++| ....-.-.+.++||||+..+.-.
T Consensus 147 -GLsvg~i~~~~~~~err~aY------------~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLID 213 (764)
T PRK12326 147 -GLTVGWITEESTPEERRAAY------------ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVD 213 (764)
T ss_pred -CCEEEEECCCCCHHHHHHHH------------cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheec
Confidence 68888887765544332222 233433332221 111 12223346899999999977432
Q ss_pred chHHHHHHHcccccCeEEEeccCC-CCCHHHHHHHHhhcCCCC-CCC------------hhHHHHHhccc-ccccHH---
Q 000684 321 EAQLYTTLSEFSTKNKLLITGTPL-QNSVEELWALLHFLDHDK-FKS------------KDDFIQNYKNL-SSFNEN--- 382 (1352)
Q Consensus 321 ~Skl~~aL~~l~~~~rlLLTGTPl-qNnl~EL~sLL~fL~p~~-f~~------------~~~F~~~f~~~-~~~~~~--- 382 (1352)
. ++.-|+|||.+- ++....++.+..-|.++. |.- .....+.+... .-.+..
T Consensus 214 e-----------ArtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~ 282 (764)
T PRK12326 214 E-----------ALVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVG 282 (764)
T ss_pred c-----------ccCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhH
Confidence 2 345588888553 334444555555554432 110 00111222111 000111
Q ss_pred -HHHHHHHhhcch-hhhhhhHhhhccCCCcEEEEEEecCC-------HHHHHHHHHHHHH------------------h-
Q 000684 383 -ELANLHMELRPH-ILRRIIKDVEKSLPPKIERILRVEMS-------PLQKQYYKWILER------------------N- 434 (1352)
Q Consensus 383 -~i~~L~~~L~p~-~LRR~k~dv~~~LPpk~e~iv~v~Ls-------~~Qk~~Yk~il~~------------------~- 434 (1352)
.+..+...|+-+ ++.| |+.--+-.....+|- +.| .++.-+.+.|..+ +
T Consensus 283 ~~~~~i~~AL~A~~l~~~---d~dYiV~dgeV~iVD-e~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~Qnf 358 (764)
T PRK12326 283 TTLTQVNVALHAHALLQR---DVHYIVRDGKVHLIN-ASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQAL 358 (764)
T ss_pred HHHHHHHHHHHHHHHHhc---CCcEEEECCEEEEEE-CCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHH
Confidence 112222222222 1111 111000011111111 111 1111111111111 1
Q ss_pred ---HHhhhccccCchhhHHHHHHHHHHhcCCcccccccc-CCCCCCCCCCchhhHHHHhhhcchhHHHHHHHHHhhhcCC
Q 000684 435 ---FHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESAD-HGYGGDTSINDTSKLERIILSSGKLVILDKLLVRLHETKH 510 (1352)
Q Consensus 435 ---~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e-~~~~~~~~~~~~~~l~~li~~SgKl~~L~kLL~~l~~~g~ 510 (1352)
|..+ .|..| .......+++++.+-+.+.-+.- +..-.+ ..+ .-......|...+.+-+..+++.|.
T Consensus 359 Fr~Y~kL-sGMTG---Ta~t~~~Ef~~iY~l~Vv~IPtnkp~~R~d--~~d----~iy~t~~~k~~Aii~ei~~~~~~Gr 428 (764)
T PRK12326 359 IGRYPTV-CGMTG---TAVAAGEQLRQFYDLGVSVIPPNKPNIRED--EAD----RVYATAAEKNDAIVEHIAEVHETGQ 428 (764)
T ss_pred HHhcchh-eeecC---CChhHHHHHHHHhCCcEEECCCCCCceeec--CCC----ceEeCHHHHHHHHHHHHHHHHHcCC
Confidence 1111 11112 12223345666655543321111 000000 000 1112245588888888888899999
Q ss_pred eEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCcc---------
Q 000684 511 RVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATA--------- 581 (1352)
Q Consensus 511 KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~A--------- 581 (1352)
.|||.+..+..-+.|..+|...|+++..|...-. +.-..+|.+=- ....+.|+|..+|+|.|+.-.
T Consensus 429 PVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~AG----~~gaVTIATNMAGRGTDIkLg~~~~~~~~~ 503 (764)
T PRK12326 429 PVLVGTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAEAG----KYGAVTVSTQMAGRGTDIRLGGSDEADRDR 503 (764)
T ss_pred CEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHhcC----CCCcEEEEecCCCCccCeecCCCcccchHH
Confidence 9999999999999999999999999999988744 33344555422 223589999999999887633
Q ss_pred ------CEEEEcCCCCChhhHHHHhhhhcccCCCceEEEE
Q 000684 582 ------DTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIY 615 (1352)
Q Consensus 582 ------dtVIi~DsdWNP~~dlQAigRahRiGQkk~V~Vy 615 (1352)
=+||...-.-|-..|.|..||++|.|+......|
T Consensus 504 V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~ 543 (764)
T PRK12326 504 VAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF 543 (764)
T ss_pred HHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE
Confidence 3788888899999999999999999998776554
No 127
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.30 E-value=1.5e-10 Score=149.29 Aligned_cols=353 Identities=16% Similarity=0.137 Sum_probs=214.7
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHh-cCCCCcEEEEEChhhH-HHHHHHHHHHcCCC
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNA-QQIPGPFLVVVPLSTL-SNWAKEFRKWLPTM 252 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~-~~~~gp~LIVvP~s~L-~nW~~Ef~kw~p~l 252 (1352)
...+++|..+++.....+..+..++|..+||.|||..+++...+.... ......++.|.|..++ .+-.+.+..++...
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 194 HEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred chhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccc
Confidence 456999999999999887776689999999999999988887777665 3345668888898665 77778888887665
Q ss_pred eEEEE--EcCchhHHHHHH-----HhhhccccCCCCccccEEEecHHHHHhh------HhhhhccCcceEecchhcccCC
Q 000684 253 NVIVY--VGTRASREVCQQ-----YEFYNDKKVGRPIKFNTLLTTYEVVLKD------KAVLSKIKWNYLMVDEAHRLKN 319 (1352)
Q Consensus 253 ~vvvy--~G~~~~r~~i~~-----~e~~~~~~~~~~~kf~VlItTye~l~~d------~~~L~~i~w~~lIVDEAHrlKN 319 (1352)
.+..- +|+....-.... ......+ .....-+.+.+++...+... ...+..+.-..+|+||+|-+--
T Consensus 274 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~d-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~ 352 (733)
T COG1203 274 SVIGKSLHSSSKEPLLLEPDQDILLTLTTND-SYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYAD 352 (733)
T ss_pred ccccccccccccchhhhccccccceeEEecc-cccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcc
Confidence 55544 565544332111 0000000 01112233444443333221 1125556678999999999855
Q ss_pred c-chHHHHHHHcc---cccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchh
Q 000684 320 S-EAQLYTTLSEF---STKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHI 395 (1352)
Q Consensus 320 ~-~Skl~~aL~~l---~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~ 395 (1352)
. ...+..++..+ -....+++|||+-. .|.+.+.. .+
T Consensus 353 ~~~~~~l~~~i~~l~~~g~~ill~SATlP~----------------------~~~~~l~~--------------~~---- 392 (733)
T COG1203 353 ETMLAALLALLEALAEAGVPVLLMSATLPP----------------------FLKEKLKK--------------AL---- 392 (733)
T ss_pred cchHHHHHHHHHHHHhCCCCEEEEecCCCH----------------------HHHHHHHH--------------HH----
Confidence 4 23333333222 23556999999621 01111100 00
Q ss_pred hhhhhHhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCC
Q 000684 396 LRRIIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGG 475 (1352)
Q Consensus 396 LRR~k~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~ 475 (1352)
.... ..+ .+.+ ....++.|.+.......
T Consensus 393 ~~~~-~~~---~~~~---------------------------------------------~~~~~~e~~~~~~~~~~--- 420 (733)
T COG1203 393 GKGR-EVV---ENAK---------------------------------------------FCPKEDEPGLKRKERVD--- 420 (733)
T ss_pred hccc-cee---cccc---------------------------------------------ccccccccccccccchh---
Confidence 0000 000 0000 00001111111100000
Q ss_pred CCCCCchhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHh
Q 000684 476 DTSINDTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHF 555 (1352)
Q Consensus 476 ~~~~~~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~F 555 (1352)
+. .... ..+..++..-...|.+|+|-++.+..+-.+...|+..+.+++.||+..+...|...++..
T Consensus 421 ------------~~-~~~~-~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l 486 (733)
T COG1203 421 ------------VE-DGPQ-EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKEREL 486 (733)
T ss_pred ------------hh-hhhh-HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHH
Confidence 00 0000 112222333346788999999999999999999998888899999999999999998865
Q ss_pred cCC-CCCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccC--CCceEEEEEEecCCCHHHHHHHHHH
Q 000684 556 NAP-GSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIG--QQEVVNIYRFVTSKSVEEDILERAK 632 (1352)
Q Consensus 556 n~~-~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiG--Qkk~V~VyrLvt~~TiEE~Il~ra~ 632 (1352)
..- ..+...++|+|.+...|+|+. .|.+|- |+. -....+||.||++|-| ....+.||...-......+.++...
T Consensus 487 ~~~~~~~~~~IvVaTQVIEagvDid-fd~mIT-e~a-PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~~ 563 (733)
T COG1203 487 KKLFKQNEGFIVVATQVIEAGVDID-FDVLIT-ELA-PIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKLE 563 (733)
T ss_pred HHHHhccCCeEEEEeeEEEEEeccc-cCeeee-cCC-CHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhcch
Confidence 431 122335899999999999988 676664 221 2556789999999999 6678888888888888888877776
Q ss_pred HHHhh
Q 000684 633 KKMVL 637 (1352)
Q Consensus 633 ~K~~L 637 (1352)
.++.-
T Consensus 564 ~~~~~ 568 (733)
T COG1203 564 KKLKS 568 (733)
T ss_pred hhhcc
Confidence 66543
No 128
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.22 E-value=1.4e-10 Score=122.37 Aligned_cols=157 Identities=22% Similarity=0.300 Sum_probs=108.3
Q ss_pred cHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChh-hHHHHHHHHHHHcCC--CeE
Q 000684 178 RDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLS-TLSNWAKEFRKWLPT--MNV 254 (1352)
Q Consensus 178 r~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s-~L~nW~~Ef~kw~p~--l~v 254 (1352)
.|+|.+++.-+. ++.+.++...+|.|||..++..+....... ..+.+||++|.. ++.+-..++..++.. .++
T Consensus 1 t~~Q~~~~~~i~----~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~ 75 (169)
T PF00270_consen 1 TPLQQEAIEAII----SGKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRV 75 (169)
T ss_dssp -HHHHHHHHHHH----TTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSE
T ss_pred CHHHHHHHHHHH----cCCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeeccccccccccccccccccccccc
Confidence 389999999887 678899999999999999775554433333 345799999974 568888899998854 688
Q ss_pred EEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhh--hhccCcceEecchhcccCCc--chHHHHHHHc
Q 000684 255 IVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAV--LSKIKWNYLMVDEAHRLKNS--EAQLYTTLSE 330 (1352)
Q Consensus 255 vvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~--L~~i~w~~lIVDEAHrlKN~--~Skl~~aL~~ 330 (1352)
..++|......... .+. ....+|+|+|++.+...... +.-...++|||||+|.+-.. .......+..
T Consensus 76 ~~~~~~~~~~~~~~--~~~-------~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~ 146 (169)
T PF00270_consen 76 VLLHGGQSISEDQR--EVL-------SNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRR 146 (169)
T ss_dssp EEESTTSCHHHHHH--HHH-------HTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHH
T ss_pred cccccccccccccc--ccc-------cccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHH
Confidence 88887665321111 111 12589999999998875543 12234799999999999653 2233333344
Q ss_pred c---cccCeEEEeccCCCCCHH
Q 000684 331 F---STKNKLLITGTPLQNSVE 349 (1352)
Q Consensus 331 l---~~~~rlLLTGTPlqNnl~ 349 (1352)
+ .....+++||||- .+++
T Consensus 147 ~~~~~~~~~i~~SAT~~-~~~~ 167 (169)
T PF00270_consen 147 LKRFKNIQIILLSATLP-SNVE 167 (169)
T ss_dssp SHTTTTSEEEEEESSST-HHHH
T ss_pred hcCCCCCcEEEEeeCCC-hhHh
Confidence 3 2345799999996 4444
No 129
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.22 E-value=8.1e-10 Score=138.01 Aligned_cols=312 Identities=18% Similarity=0.188 Sum_probs=176.1
Q ss_pred HhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhc-------CCCCcEEEEEChhhH-----HHHHHHHHHHcCCCeEEEEE
Q 000684 191 SWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQ-------QIPGPFLVVVPLSTL-----SNWAKEFRKWLPTMNVIVYV 258 (1352)
Q Consensus 191 ~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~-------~~~gp~LIVvP~s~L-----~nW~~Ef~kw~p~l~vvvy~ 258 (1352)
.|+.+.|+|++..+|.|||..+...|..+...+ ...-.++.|+|...| .+|-.-|.-| ++.|.-++
T Consensus 122 aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~--gi~v~ELT 199 (1230)
T KOG0952|consen 122 AYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPL--GISVRELT 199 (1230)
T ss_pred hhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccc--cceEEEec
Confidence 467899999999999999998755444433321 122358999997544 4455555444 68899999
Q ss_pred cCchhHHHHHHHhhhccccCCCCccccEEEecHHHHH-------hhHhhhhccCcceEecchhcccCCcchH-----HHH
Q 000684 259 GTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVL-------KDKAVLSKIKWNYLMVDEAHRLKNSEAQ-----LYT 326 (1352)
Q Consensus 259 G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~-------~d~~~L~~i~w~~lIVDEAHrlKN~~Sk-----l~~ 326 (1352)
|+..--+. .-.+.+|+|||+|..- .+..++. ...+|||||.|-|...... ..+
T Consensus 200 GD~ql~~t-------------ei~~tqiiVTTPEKwDvvTRk~~~d~~l~~--~V~LviIDEVHlLhd~RGpvlEtiVaR 264 (1230)
T KOG0952|consen 200 GDTQLTKT-------------EIADTQIIVTTPEKWDVVTRKSVGDSALFS--LVRLVIIDEVHLLHDDRGPVLETIVAR 264 (1230)
T ss_pred CcchhhHH-------------HHHhcCEEEecccceeeeeeeeccchhhhh--heeeEEeeeehhhcCcccchHHHHHHH
Confidence 98643221 1236899999998652 1223333 3589999999999775433 333
Q ss_pred HHHcc----cccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhHh
Q 000684 327 TLSEF----STKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIKD 402 (1352)
Q Consensus 327 aL~~l----~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~d 402 (1352)
.++.. ..-+.++||||- -|..|+. .||..+.....-.|+..|.... |+
T Consensus 265 tlr~vessqs~IRivgLSATl--PN~eDvA---~fL~vn~~~glfsFd~~yRPvp------------------L~----- 316 (1230)
T KOG0952|consen 265 TLRLVESSQSMIRIVGLSATL--PNYEDVA---RFLRVNPYAGLFSFDQRYRPVP------------------LT----- 316 (1230)
T ss_pred HHHHHHhhhhheEEEEeeccC--CCHHHHH---HHhcCCCccceeeecccccccc------------------ee-----
Confidence 33222 223448899994 2444443 3444443333333444443211 00
Q ss_pred hhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCch
Q 000684 403 VEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDT 482 (1352)
Q Consensus 403 v~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~ 482 (1352)
....-..+.=...|.+..
T Consensus 317 -------~~~iG~k~~~~~~~~~~~------------------------------------------------------- 334 (1230)
T KOG0952|consen 317 -------QGFIGIKGKKNRQQKKNI------------------------------------------------------- 334 (1230)
T ss_pred -------eeEEeeecccchhhhhhH-------------------------------------------------------
Confidence 000000000000000000
Q ss_pred hhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHH----HhcCCc-------------------EEEE
Q 000684 483 SKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYM----SYKGFQ-------------------FQRL 539 (1352)
Q Consensus 483 ~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L----~~~g~~-------------------~~rl 539 (1352)
..++ .++++ ++..+||.|+||+....----.+..| ...|.. +..-
T Consensus 335 --------d~~~---~~kv~-e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iH 402 (1230)
T KOG0952|consen 335 --------DEVC---YDKVV-EFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIH 402 (1230)
T ss_pred --------HHHH---HHHHH-HHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhc
Confidence 0011 12222 22356888888887654322222222 222222 1223
Q ss_pred eCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhh----------HHHHhhhhcccCCC
Q 000684 540 DGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQN----------DLQAMSRAHRIGQQ 609 (1352)
Q Consensus 540 dGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~----------dlQAigRahRiGQk 609 (1352)
+.++.-++|+..-+.|..+ ..-+|++|.....|+||++--++|-=-.-|++.. .+|..|||+|.+=.
T Consensus 403 hAGm~r~DR~l~E~~F~~G---~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd 479 (1230)
T KOG0952|consen 403 HAGMLRSDRQLVEKEFKEG---HIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFD 479 (1230)
T ss_pred ccccchhhHHHHHHHHhcC---CceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCC
Confidence 4567788999999999884 3458999999999999995444443333354443 58999999999766
Q ss_pred ceEEEEEEecCCCHH
Q 000684 610 EVVNIYRFVTSKSVE 624 (1352)
Q Consensus 610 k~V~VyrLvt~~TiE 624 (1352)
+.-..+-.-+.++++
T Consensus 480 ~~G~giIiTt~dkl~ 494 (1230)
T KOG0952|consen 480 SSGEGIIITTRDKLD 494 (1230)
T ss_pred CCceEEEEecccHHH
Confidence 555555555555544
No 130
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.21 E-value=1e-09 Score=123.19 Aligned_cols=316 Identities=18% Similarity=0.186 Sum_probs=206.0
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEECh-hhHHHHHHHHHHHcCCCe
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPL-STLSNWAKEFRKWLPTMN 253 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~-s~L~nW~~Ef~kw~p~l~ 253 (1352)
.+.||.|++++|-.. .+..++|...+|-||++.- -|-.|. ..|-.|||||+ |++....-.++...-+..
T Consensus 93 ekfrplq~~ain~~m----a~ed~~lil~tgggkslcy--qlpal~----adg~alvi~plislmedqil~lkqlgi~as 162 (695)
T KOG0353|consen 93 EKFRPLQLAAINATM----AGEDAFLILPTGGGKSLCY--QLPALC----ADGFALVICPLISLMEDQILQLKQLGIDAS 162 (695)
T ss_pred HhcChhHHHHhhhhh----ccCceEEEEeCCCccchhh--hhhHHh----cCCceEeechhHHHHHHHHHHHHHhCcchh
Confidence 368999999999776 6889999999999999742 111121 25778999998 666666666666543333
Q ss_pred EEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhh-------ccCcceEecchhcccCC-------
Q 000684 254 VIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLS-------KIKWNYLMVDEAHRLKN------- 319 (1352)
Q Consensus 254 vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~-------~i~w~~lIVDEAHrlKN------- 319 (1352)
.+-...+++.-.... -++ .++...|..+..|++.+.+...++. .-.|.+|.|||.|.+..
T Consensus 163 ~lnansske~~k~v~-~~i-----~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~ 236 (695)
T KOG0353|consen 163 MLNANSSKEEAKRVE-AAI-----TNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRP 236 (695)
T ss_pred hccCcccHHHHHHHH-HHH-----cCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCc
Confidence 222222222222111 111 2345689999999998877654443 33688999999998743
Q ss_pred cchHHHHHHHcccccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhh
Q 000684 320 SEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRI 399 (1352)
Q Consensus 320 ~~Skl~~aL~~l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~ 399 (1352)
..+.+...-++|+....++||+|...+-+.+.-.+|..-. .|
T Consensus 237 dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~------------~~-------------------------- 278 (695)
T KOG0353|consen 237 DYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEA------------AF-------------------------- 278 (695)
T ss_pred chHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHh------------hh--------------------------
Confidence 2223333335677778899999987665554433332100 00
Q ss_pred hHhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCC
Q 000684 400 IKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSI 479 (1352)
Q Consensus 400 k~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~ 479 (1352)
..|--.|.|.|.......+..
T Consensus 279 -------------------------------------------------------tf~a~fnr~nl~yev~qkp~n---- 299 (695)
T KOG0353|consen 279 -------------------------------------------------------TFRAGFNRPNLKYEVRQKPGN---- 299 (695)
T ss_pred -------------------------------------------------------eeecccCCCCceeEeeeCCCC----
Confidence 001111222222211111110
Q ss_pred CchhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCC
Q 000684 480 NDTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPG 559 (1352)
Q Consensus 480 ~~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~ 559 (1352)
..+-.+ -+.+++..- -.|..-||||-...-.+.+...|+..|+....++..+.+.+|.-+-..+-+
T Consensus 300 -~dd~~e----------di~k~i~~~-f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a-- 365 (695)
T KOG0353|consen 300 -EDDCIE----------DIAKLIKGD-FAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIA-- 365 (695)
T ss_pred -hHHHHH----------HHHHHhccc-cCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccc--
Confidence 000001 112222221 146677999999999999999999999999999999999888777777765
Q ss_pred CCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHH-----------------------------------------
Q 000684 560 SEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQ----------------------------------------- 598 (1352)
Q Consensus 560 s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQ----------------------------------------- 598 (1352)
+.+-+++.|-|.|.||+-+....||.-..+-+-.+|.|
T Consensus 366 -~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfs 444 (695)
T KOG0353|consen 366 -GEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFS 444 (695)
T ss_pred -cceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeec
Confidence 45668999999999999999999999999999999999
Q ss_pred --HhhhhcccCCCceEEEEEEe
Q 000684 599 --AMSRAHRIGQQEVVNIYRFV 618 (1352)
Q Consensus 599 --AigRahRiGQkk~V~VyrLv 618 (1352)
--|||+|-|++-.+..|+=.
T Consensus 445 ekesgragrd~~~a~cilyy~~ 466 (695)
T KOG0353|consen 445 EKESGRAGRDDMKADCILYYGF 466 (695)
T ss_pred chhccccccCCCcccEEEEech
Confidence 45888999999777666543
No 131
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.21 E-value=2.7e-10 Score=124.45 Aligned_cols=155 Identities=22% Similarity=0.227 Sum_probs=108.5
Q ss_pred CCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHH-HHHHHHHHHhc-CCCCcEEEEEChh-hHHHHHHHHHHHcC--
Q 000684 176 KLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQS-VSMLGFLQNAQ-QIPGPFLVVVPLS-TLSNWAKEFRKWLP-- 250 (1352)
Q Consensus 176 ~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqa-Ia~l~~L~~~~-~~~gp~LIVvP~s-~L~nW~~Ef~kw~p-- 250 (1352)
.+++||.++++-+. ++.+++++.++|.|||+.. +.++..+.... ...+.+|||+|.. ++.|+...+..+..
T Consensus 21 ~~~~~Q~~~~~~~~----~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 21 KPTPIQARAIPPLL----SGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCHHHHHHHHHHh----cCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 58999999998887 4789999999999999884 44555555432 2334589999985 55889888888864
Q ss_pred CCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHh--hhhccCcceEecchhcccCCcc-h-HHHH
Q 000684 251 TMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKA--VLSKIKWNYLMVDEAHRLKNSE-A-QLYT 326 (1352)
Q Consensus 251 ~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~--~L~~i~w~~lIVDEAHrlKN~~-S-kl~~ 326 (1352)
++++..++|+.........+. ...+|+|+|++.+..... .+.--.++++||||+|.+.+.. . .+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~----------~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~ 166 (203)
T cd00268 97 NLKVVVIYGGTSIDKQIRKLK----------RGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIRE 166 (203)
T ss_pred CceEEEEECCCCHHHHHHHhc----------CCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHH
Confidence 577888888776654433221 257899999987755321 1222357899999999986543 2 2333
Q ss_pred HHHcccc-cCeEEEeccCC
Q 000684 327 TLSEFST-KNKLLITGTPL 344 (1352)
Q Consensus 327 aL~~l~~-~~rlLLTGTPl 344 (1352)
.+..+.. ...+++||||-
T Consensus 167 ~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 167 ILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred HHHhCCcccEEEEEeccCC
Confidence 3444443 44688999985
No 132
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.19 E-value=3.6e-09 Score=121.08 Aligned_cols=320 Identities=17% Similarity=0.182 Sum_probs=200.3
Q ss_pred cHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChh-hHHHHHHHHHHHc-C--CCe
Q 000684 178 RDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLS-TLSNWAKEFRKWL-P--TMN 253 (1352)
Q Consensus 178 r~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s-~L~nW~~Ef~kw~-p--~l~ 253 (1352)
.|.|..+++-++. .+..+.+++.+|.||++.- -|-.|.. .|-++||.|+- ++....+.+.+.- | ++|
T Consensus 22 s~LQE~A~~c~VK---~k~DVyVsMPTGaGKSLCy--QLPaL~~----~gITIV~SPLiALIkDQiDHL~~LKVp~~SLN 92 (641)
T KOG0352|consen 22 SRLQEQAINCIVK---RKCDVYVSMPTGAGKSLCY--QLPALVH----GGITIVISPLIALIKDQIDHLKRLKVPCESLN 92 (641)
T ss_pred ChHHHHHHHHHHh---ccCcEEEeccCCCchhhhh--hchHHHh----CCeEEEehHHHHHHHHHHHHHHhcCCchhHhc
Confidence 4679999998884 6778999999999999742 1222222 24578888974 4443444444331 1 122
Q ss_pred EEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhh-----Hhhh-hccCcceEecchhcccCC------cc
Q 000684 254 VIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKD-----KAVL-SKIKWNYLMVDEAHRLKN------SE 321 (1352)
Q Consensus 254 vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d-----~~~L-~~i~w~~lIVDEAHrlKN------~~ 321 (1352)
.- ..+.+...++.+++- ......++-.|+|+...+ ...| ..-...|+||||||-... ++
T Consensus 93 SK--lSt~ER~ri~~DL~~-------ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPD 163 (641)
T KOG0352|consen 93 SK--LSTVERSRIMGDLAK-------EKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPD 163 (641)
T ss_pred ch--hhHHHHHHHHHHHHh-------cCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcc
Confidence 11 122222233333321 223456788899877543 1122 233578999999998743 22
Q ss_pred hHHHHHHHc-ccccCeEEEeccCCCCCHHHHHHHHhhcCCCC-CCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhh
Q 000684 322 AQLYTTLSE-FSTKNKLLITGTPLQNSVEELWALLHFLDHDK-FKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRI 399 (1352)
Q Consensus 322 Skl~~aL~~-l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~-f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~ 399 (1352)
-...-+|++ +..-.-+.||||--..--++++..|++-.|-. |.+ ..|..+..
T Consensus 164 YL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkT-P~FR~NLF------------------------- 217 (641)
T KOG0352|consen 164 YLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKT-PTFRDNLF------------------------- 217 (641)
T ss_pred hhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccC-cchhhhhh-------------------------
Confidence 222333333 23334588999976666677777777666532 211 11111000
Q ss_pred hHhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCC
Q 000684 400 IKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSI 479 (1352)
Q Consensus 400 k~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~ 479 (1352)
-| -.|+..++..+..|. --.++|...|--+..+...
T Consensus 218 -YD----------------------~~~K~~I~D~~~~La--------------DF~~~~LG~~~~~~~~~K~------- 253 (641)
T KOG0352|consen 218 -YD----------------------NHMKSFITDCLTVLA--------------DFSSSNLGKHEKASQNKKT------- 253 (641)
T ss_pred -HH----------------------HHHHHHhhhHhHhHH--------------HHHHHhcCChhhhhcCCCC-------
Confidence 00 012222222211111 1122222222111111110
Q ss_pred CchhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCC
Q 000684 480 NDTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPG 559 (1352)
Q Consensus 480 ~~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~ 559 (1352)
...--||||......+.++-.|..+|+....++.+....+|..+-+.+-..+
T Consensus 254 ----------------------------~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~ 305 (641)
T KOG0352|consen 254 ----------------------------FTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNE 305 (641)
T ss_pred ----------------------------cCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCC
Confidence 1123589999999999999999999999999999999999999999998754
Q ss_pred CCCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEE
Q 000684 560 SEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYR 616 (1352)
Q Consensus 560 s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~Vyr 616 (1352)
-. +++.|-+.|.|+|-+++..||..|++-|-..|.|--|||+|-|-..=++.|+
T Consensus 306 ~P---vI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYY 359 (641)
T KOG0352|consen 306 IP---VIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYY 359 (641)
T ss_pred CC---EEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeee
Confidence 44 7899999999999999999999999999999999999999999888787764
No 133
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.14 E-value=2.8e-09 Score=134.54 Aligned_cols=73 Identities=30% Similarity=0.454 Sum_probs=62.1
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEEEE-----cCCC---C---ChhhHHHHhh
Q 000684 533 GFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVII-----FDSD---W---NPQNDLQAMS 601 (1352)
Q Consensus 533 g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi-----~Dsd---W---NP~~dlQAig 601 (1352)
.|.|..-+.+++..+|...-+-|.+ +..-+|+||.....|+||+ |+|||+ |||. | +|+...|..|
T Consensus 607 pygfaIHhAGl~R~dR~~~EdLf~~---g~iqvlvstatlawgvnlp-ahtViikgtqvy~pekg~w~elsp~dv~qmlg 682 (1674)
T KOG0951|consen 607 PYGFAIHHAGLNRKDRELVEDLFAD---GHIQVLVSTATLAWGVNLP-AHTVIIKGTQVYDPEKGRWTELSPLDVMQMLG 682 (1674)
T ss_pred hccceeeccCCCcchHHHHHHHHhc---CceeEEEeehhhhhhcCCC-cceEEecCccccCcccCccccCCHHHHHHHHh
Confidence 4678888999999999999999988 4456999999999999999 678876 6664 4 6999999999
Q ss_pred hhcccCCC
Q 000684 602 RAHRIGQQ 609 (1352)
Q Consensus 602 RahRiGQk 609 (1352)
||+|.+-.
T Consensus 683 ragrp~~D 690 (1674)
T KOG0951|consen 683 RAGRPQYD 690 (1674)
T ss_pred hcCCCccC
Confidence 99998643
No 134
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.05 E-value=4.2e-08 Score=129.31 Aligned_cols=86 Identities=16% Similarity=0.235 Sum_probs=62.3
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhH-HHHHH-HH---HH
Q 000684 173 RGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTL-SNWAK-EF---RK 247 (1352)
Q Consensus 173 ~~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L-~nW~~-Ef---~k 247 (1352)
.|.+.||.|.+.+..+...+..+..+++-..+|+|||+..+.-+..... ...+++|.||+..| .|+.. ++ .+
T Consensus 242 ~~~~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~---~~~~vvi~t~t~~Lq~Ql~~~~~~~l~~ 318 (850)
T TIGR01407 242 LGLEYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI---TEKPVVISTNTKVLQSQLLEKDIPLLNE 318 (850)
T ss_pred cCCccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc---CCCeEEEEeCcHHHHHHHHHHHHHHHHH
Confidence 3568999999999988888888888999999999999886544322222 24589999998765 77644 44 34
Q ss_pred HcC-CCeEEEEEcCc
Q 000684 248 WLP-TMNVIVYVGTR 261 (1352)
Q Consensus 248 w~p-~l~vvvy~G~~ 261 (1352)
.++ ++++++..|..
T Consensus 319 ~~~~~~~~~~~kG~~ 333 (850)
T TIGR01407 319 ILNFKINAALIKGKS 333 (850)
T ss_pred HcCCCceEEEEEcch
Confidence 343 47777766654
No 135
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.05 E-value=1.6e-08 Score=128.46 Aligned_cols=121 Identities=16% Similarity=0.177 Sum_probs=97.9
Q ss_pred hhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeec
Q 000684 490 LSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLST 569 (1352)
Q Consensus 490 ~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLST 569 (1352)
....|...+.+-+..+++.|..|||-+.++..-+.|..+|...|+++..|+.... +.-..+|.+ ++.. -.+.|+|
T Consensus 430 t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~-~~EA~IIa~--AG~~--GaVTIAT 504 (913)
T PRK13103 430 TAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH-EKEAEIIAQ--AGRP--GALTIAT 504 (913)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc-hhHHHHHHc--CCCC--CcEEEec
Confidence 3457888888889999999999999999999999999999999999988887633 222334443 3222 3589999
Q ss_pred CCCccCCCCC-------------------------------------ccCEEEEcCCCCChhhHHHHhhhhcccCCCceE
Q 000684 570 RAGGLGINLA-------------------------------------TADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVV 612 (1352)
Q Consensus 570 rAgg~GINL~-------------------------------------~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V 612 (1352)
..+|+|.|+. ..=+||.-.-.-|-..|.|..||++|.|.....
T Consensus 505 NMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS 584 (913)
T PRK13103 505 NMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSS 584 (913)
T ss_pred cCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCce
Confidence 9999998874 123788888999999999999999999998776
Q ss_pred EEE
Q 000684 613 NIY 615 (1352)
Q Consensus 613 ~Vy 615 (1352)
..|
T Consensus 585 ~f~ 587 (913)
T PRK13103 585 RFY 587 (913)
T ss_pred EEE
Confidence 554
No 136
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.02 E-value=5.8e-08 Score=122.23 Aligned_cols=120 Identities=18% Similarity=0.189 Sum_probs=99.2
Q ss_pred hcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecC
Q 000684 491 SSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTR 570 (1352)
Q Consensus 491 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTr 570 (1352)
...|...+.+-+..+++.|..|||.|..+..-+.|..+|...|+++..|+.... +++..|=. +++ ....+.|+|.
T Consensus 408 ~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~--e~EA~IIa-~AG--~~GaVTIATN 482 (925)
T PRK12903 408 KHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN--AREAEIIA-KAG--QKGAITIATN 482 (925)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch--hhHHHHHH-hCC--CCCeEEEecc
Confidence 457888888888888899999999999999999999999999999999988633 34443332 332 2346899999
Q ss_pred CCccCCCCCccC--------EEEEcCCCCChhhHHHHhhhhcccCCCceEEEE
Q 000684 571 AGGLGINLATAD--------TVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIY 615 (1352)
Q Consensus 571 Agg~GINL~~Ad--------tVIi~DsdWNP~~dlQAigRahRiGQkk~V~Vy 615 (1352)
.+|+|.|+.-.. +||....+-|-..|.|..||++|.|.......|
T Consensus 483 MAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 483 MAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred cccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 999999987544 899999999999999999999999998776544
No 137
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.94 E-value=3.6e-07 Score=108.23 Aligned_cols=133 Identities=23% Similarity=0.329 Sum_probs=111.9
Q ss_pred HHHHHHHHhh---hcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCCc
Q 000684 497 ILDKLLVRLH---ETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAGG 573 (1352)
Q Consensus 497 ~L~kLL~~l~---~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg 573 (1352)
.+++|+.++. +.|.||||-+-..+|.+-|.+||...|+++..+|..+..-+|.++|.+... +.|-+|+-..-.-
T Consensus 431 QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~---G~~DvLVGINLLR 507 (663)
T COG0556 431 QVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRL---GEFDVLVGINLLR 507 (663)
T ss_pred cHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhc---CCccEEEeehhhh
Confidence 4666666554 578999999999999999999999999999999999999999999999998 4455899999999
Q ss_pred cCCCCCccCEEEEcCCCC-----ChhhHHHHhhhhcccCCCceEEEEEEecCCCHHHHHHHHHHH
Q 000684 574 LGINLATADTVIIFDSDW-----NPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKK 633 (1352)
Q Consensus 574 ~GINL~~AdtVIi~DsdW-----NP~~dlQAigRahRiGQkk~V~VyrLvt~~TiEE~Il~ra~~ 633 (1352)
+||||+.+..|.|+|.|- +-...+|-||||-|--.-+ |..|-=...+++++.|-+...+
T Consensus 508 EGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~Gk-vIlYAD~iT~sM~~Ai~ET~RR 571 (663)
T COG0556 508 EGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK-VILYADKITDSMQKAIDETERR 571 (663)
T ss_pred ccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCCe-EEEEchhhhHHHHHHHHHHHHH
Confidence 999999999999999984 7788999999999965444 5555555556777777766554
No 138
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=98.89 E-value=4.1e-08 Score=121.77 Aligned_cols=367 Identities=20% Similarity=0.238 Sum_probs=197.9
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHH-HHHHHHHHcCCC
Q 000684 174 GGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSN-WAKEFRKWLPTM 252 (1352)
Q Consensus 174 ~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~n-W~~Ef~kw~p~l 252 (1352)
..+|-.+|.+++-.|. .|.++.+|.-+-.|||+.|=..++..... ...++.-.|...|+| =-++|+.-+.+.
T Consensus 295 pFelD~FQk~Ai~~le----rg~SVFVAAHTSAGKTvVAEYAialaq~h---~TR~iYTSPIKALSNQKfRDFk~tF~Dv 367 (1248)
T KOG0947|consen 295 PFELDTFQKEAIYHLE----RGDSVFVAAHTSAGKTVVAEYAIALAQKH---MTRTIYTSPIKALSNQKFRDFKETFGDV 367 (1248)
T ss_pred CCCccHHHHHHHHHHH----cCCeEEEEecCCCCcchHHHHHHHHHHhh---ccceEecchhhhhccchHHHHHHhcccc
Confidence 5689999999997775 79999999999999999975444322221 235688899888854 557888887777
Q ss_pred eEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHh----hHhhhhccCcceEecchhcccCCcc-hHHHHH
Q 000684 253 NVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLK----DKAVLSKIKWNYLMVDEAHRLKNSE-AQLYTT 327 (1352)
Q Consensus 253 ~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~----d~~~L~~i~w~~lIVDEAHrlKN~~-Skl~~a 327 (1352)
+ +++|+.. ......++|+|-|++.. ....++. ...||+||.|++-+.+ .-.+.-
T Consensus 368 g--LlTGDvq-----------------inPeAsCLIMTTEILRsMLYrgadliRD--vE~VIFDEVHYiND~eRGvVWEE 426 (1248)
T KOG0947|consen 368 G--LLTGDVQ-----------------INPEASCLIMTTEILRSMLYRGADLIRD--VEFVIFDEVHYINDVERGVVWEE 426 (1248)
T ss_pred c--eeeccee-----------------eCCCcceEeehHHHHHHHHhcccchhhc--cceEEEeeeeeccccccccccee
Confidence 6 5667642 23467889999998764 2344444 4669999999995532 223444
Q ss_pred HHcccccC--eEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhHhhhc
Q 000684 328 LSEFSTKN--KLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIKDVEK 405 (1352)
Q Consensus 328 L~~l~~~~--rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~dv~~ 405 (1352)
+.-+-.+| -++||||- .| ..+|..|.+....-+. +++-- .
T Consensus 427 ViIMlP~HV~~IlLSATV-PN-------------------~~EFA~WIGRtK~K~I------------yViST------~ 468 (1248)
T KOG0947|consen 427 VIIMLPRHVNFILLSATV-PN-------------------TLEFADWIGRTKQKTI------------YVIST------S 468 (1248)
T ss_pred eeeeccccceEEEEeccC-CC-------------------hHHHHHHhhhccCceE------------EEEec------C
Confidence 44444444 38899993 22 3356556543221000 00000 0
Q ss_pred cCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHh---cCCccccccccCCCCCCCCCCch
Q 000684 406 SLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKC---CNHPFLFESADHGYGGDTSINDT 482 (1352)
Q Consensus 406 ~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~---cnHP~L~~~~e~~~~~~~~~~~~ 482 (1352)
.-|-.-|+.+++. +.+|+ |+.++-..+.++.+.+..++- ..-+-+ -+.-+-..+.... .+.......
T Consensus 469 kRPVPLEh~l~t~-----~~l~k-iidq~g~fl~~~~~~a~~~~~---~~ak~~~~~~~~~~~~rgs~~~-ggk~~~~~g 538 (1248)
T KOG0947|consen 469 KRPVPLEHYLYTK-----KSLFK-IIDQNGIFLLKGIKDAKDSLK---KEAKFVDVEKSDARGGRGSQKR-GGKTNYHNG 538 (1248)
T ss_pred CCccceEEEEEec-----cceeh-hhcccchhhhhcchhhhhhhc---cccccccccccccccccccccc-CCcCCCCCC
Confidence 1244556666665 11221 111111111111111110000 000000 0000000000000 000000000
Q ss_pred -hhHHHHhhhcchhHHHHHHHHHhhhc-CCeEEEEecchhHHHHHHHHHHhcCCc---------------EEEEeC----
Q 000684 483 -SKLERIILSSGKLVILDKLLVRLHET-KHRVLIFSQMVRMLDILAEYMSYKGFQ---------------FQRLDG---- 541 (1352)
Q Consensus 483 -~~l~~li~~SgKl~~L~kLL~~l~~~-g~KVLIFSq~~~~ldiL~d~L~~~g~~---------------~~rldG---- 541 (1352)
......-...+|-.....+|..++.. --.++||+-..+-.|.-+++|...++. +.||.|
T Consensus 539 ~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~ 618 (1248)
T KOG0947|consen 539 GSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRN 618 (1248)
T ss_pred CcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhcc
Confidence 00000001112212344555555543 347889998888888888888744332 223333
Q ss_pred --------------------CCCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEEEEcCC---------CCC
Q 000684 542 --------------------STKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDS---------DWN 592 (1352)
Q Consensus 542 --------------------s~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~Ds---------dWN 592 (1352)
+.-+--+.-+---|+. +-+-+|.+|...+.|+|+++ .+|||-.. +-+
T Consensus 619 LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqr---GlVKVLFATETFAMGVNMPA-RtvVF~Sl~KhDG~efR~L~ 694 (1248)
T KOG0947|consen 619 LPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQR---GLVKVLFATETFAMGVNMPA-RTVVFSSLRKHDGNEFRELL 694 (1248)
T ss_pred chHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhc---CceEEEeehhhhhhhcCCCc-eeEEeeehhhccCcceeecC
Confidence 2222222222223554 34568999999999999994 55555332 458
Q ss_pred hhhHHHHhhhhcccCCCceEEEEEEecC
Q 000684 593 PQNDLQAMSRAHRIGQQEVVNIYRFVTS 620 (1352)
Q Consensus 593 P~~dlQAigRahRiGQkk~V~VyrLvt~ 620 (1352)
|..|.|..|||+|-|=...-+|.-+...
T Consensus 695 PGEytQMAGRAGRRGlD~tGTVii~~~~ 722 (1248)
T KOG0947|consen 695 PGEYTQMAGRAGRRGLDETGTVIIMCKD 722 (1248)
T ss_pred ChhHHhhhccccccccCcCceEEEEecC
Confidence 9999999999999998766666544443
No 139
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.82 E-value=2.3e-08 Score=128.46 Aligned_cols=142 Identities=17% Similarity=0.219 Sum_probs=93.2
Q ss_pred hhcchhHHHHHHHHHhhhc---------CCeEEEEecchhHHHHHHHHHHhcCC-----cEE--------EEeCCCCH--
Q 000684 490 LSSGKLVILDKLLVRLHET---------KHRVLIFSQMVRMLDILAEYMSYKGF-----QFQ--------RLDGSTKA-- 545 (1352)
Q Consensus 490 ~~SgKl~~L~kLL~~l~~~---------g~KVLIFSq~~~~ldiL~d~L~~~g~-----~~~--------rldGs~~~-- 545 (1352)
...+|..+|.++|..+... +.+|||||++.+++..|.+||...++ .|. ...|..+.
T Consensus 267 Ee~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~~~~~~~~~~fm~~~l~~y~~~~~~~~k~~ 346 (814)
T TIGR00596 267 EENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTTSNKKRGSRAFLLNKLRWYRKWREETSKLA 346 (814)
T ss_pred ccCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhhhhhhhhh
Confidence 4688999999999876543 46899999999999999999966222 111 01011100
Q ss_pred -------------------------------H---HHHHHHHHhcCCCCC--Cc----EEE-------------------
Q 000684 546 -------------------------------E---LRHQAMDHFNAPGSE--DF----CFL------------------- 566 (1352)
Q Consensus 546 -------------------------------~---eR~~~Id~Fn~~~s~--~~----vfL------------------- 566 (1352)
. .-+..+.+|..++.. .. .+|
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~krrr~rG~s~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 426 (814)
T TIGR00596 347 KEVQSQDTFPENASSNVNKTFRKEQVPTKRRRVRGGSEVAVEKLRNANTNDMQHFEEDHELEEEGDDLEDGPAQEINAAN 426 (814)
T ss_pred HhhhhccccccccccccccccccccccccccccccchhHHHhhhcccccccccccchhhhhhhhhhhhcccccccccccc
Confidence 0 001236666543221 00 011
Q ss_pred ----eecCCCccCCCCCc----------------------c----------CEEEEcCCCCChhhHHHHhhhhcccCCCc
Q 000684 567 ----LSTRAGGLGINLAT----------------------A----------DTVIIFDSDWNPQNDLQAMSRAHRIGQQE 610 (1352)
Q Consensus 567 ----LSTrAgg~GINL~~----------------------A----------dtVIi~DsdWNP~~dlQAigRahRiGQkk 610 (1352)
++|..+..|+|... + +.||+|||+-....-+| +-|++|.|.
T Consensus 427 ~~~~~~~~~~~e~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~e~~P~~VImYEP~~sfIR~IE-vyra~r~~r-- 503 (814)
T TIGR00596 427 DSKIFEIIDEENDIDIYSGAEFDNLPQHITHFLWGERDEYVLRCSLEELMPRYVIMYEPDISFIRQLE-VYKASRPLR-- 503 (814)
T ss_pred ccccccccccccccccchhhccccccceeeeecccccchhhHHHHHhhhCCCEEEEECCChHHHHHHH-HHHccCCCC--
Confidence 45666778888876 4 89999999877777776 234555554
Q ss_pred eEEEEEEecCCCHHHHHHHHHHHH
Q 000684 611 VVNIYRFVTSKSVEEDILERAKKK 634 (1352)
Q Consensus 611 ~V~VyrLvt~~TiEE~Il~ra~~K 634 (1352)
++.||-|++.+|+||.-|..+.+|
T Consensus 504 ~~rVyfL~y~~S~EEq~yl~sirr 527 (814)
T TIGR00596 504 PLRVYFLYYGGSIEEQRYLTSLRR 527 (814)
T ss_pred CcEEEEEEECCcHHHHHHHHHHHH
Confidence 388999999999999987766655
No 140
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.79 E-value=1.8e-07 Score=101.24 Aligned_cols=124 Identities=22% Similarity=0.312 Sum_probs=83.8
Q ss_pred cHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCC--cEEEEEChhhH-HHHHHHHH---HHcCC
Q 000684 178 RDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPG--PFLVVVPLSTL-SNWAKEFR---KWLPT 251 (1352)
Q Consensus 178 r~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~g--p~LIVvP~s~L-~nW~~Ef~---kw~p~ 251 (1352)
..-|.+.+-..+ -|..++...-.|+|||... .|+.|.......| .+||+|.+..| .|...|+. ++.|+
T Consensus 66 sevqhecipqai----lgmdvlcqaksgmgktavf--vl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~ 139 (387)
T KOG0329|consen 66 SEVQHECIPQAI----LGMDVLCQAKSGMGKTAVF--VLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPS 139 (387)
T ss_pred hHhhhhhhhHHh----hcchhheecccCCCceeee--ehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCC
Confidence 345777776655 4677888889999999652 3444555445555 47999998766 66666654 55799
Q ss_pred CeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhh--HhhhhccCcceEecchhccc
Q 000684 252 MNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKD--KAVLSKIKWNYLMVDEAHRL 317 (1352)
Q Consensus 252 l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d--~~~L~~i~w~~lIVDEAHrl 317 (1352)
.++.+|.|.-.-.... |.. +. -.+|++.|+..++.- ...|.--.....|+||+..+
T Consensus 140 vkvaVFfGG~~Ikkde---e~l------k~-~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkm 197 (387)
T KOG0329|consen 140 VKVSVFFGGLFIKKDE---ELL------KN-CPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKM 197 (387)
T ss_pred ceEEEEEcceeccccH---HHH------hC-CCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHH
Confidence 9999999986543321 111 11 579999999987653 23344445678899999876
No 141
>PF06461 DUF1086: Domain of Unknown Function (DUF1086); InterPro: IPR009462 This entry represents several eukaryotic domains of unknown function, which are present in chromodomain helicase DNA binding proteins. This domain is often found in conjunction with IPR000330 from INTERPRO, IPR001650 from INTERPRO, IPR009463 from INTERPRO, IPR000953 from INTERPRO and IPR001965 from INTERPRO.
Probab=98.78 E-value=1.7e-08 Score=101.31 Aligned_cols=115 Identities=17% Similarity=0.352 Sum_probs=89.1
Q ss_pred CCCCCCCcchhhhhhcccccCCCCHHHHHHHHHHHHhcCCch-hHHHHHHHhCCCCCCCcHHHHHHHHHHHHHH-HHHHH
Q 000684 796 SVPSVPFIDGASAQVRDWSYGNLSKRDATRFYRAVMKFGNQS-QISLIARDAGGAVATAPQEVVVELFDILIDG-CREAV 873 (1352)
Q Consensus 796 ~~~~~~~~~~e~~~l~~~g~~~~~~~~~~~f~~~~~k~G~~~-~~~~I~~e~~gk~~~~~~e~~~~~~~~~~~~-c~e~v 873 (1352)
...++|+++++..++..+| ||.++.++|++++||||... +..+++.++.+ ++.+++.+|...|+.+ |+...
T Consensus 22 ~~~~pPLm~~~g~~l~VlG---Fn~rQR~~Fln~vMR~G~~~f~~~w~~~~Lr~----Ks~~ei~aY~~LFm~HL~E~~~ 94 (145)
T PF06461_consen 22 NKDPPPLMAGVGGQLEVLG---FNPRQRKAFLNAVMRYGMGAFDWKWFVPRLRG----KSEKEIRAYGSLFMRHLCEPGT 94 (145)
T ss_pred CCCCCCccccCCCceEEec---cCHHHHHHHHHHHHHHCcCcccchHHhhhhcc----ccHHHHHHHHHHHHHHhcCCCc
Confidence 3345899999998998888 58999999999999999842 46889988775 4667788999998854 55543
Q ss_pred hcCCCCCCCCCcccccCcc---cchhHHHhhHHHHHHHHHHhhcCCCCCCceEec
Q 000684 874 EVGSPDPKGPPLLDFFGVS---VKANDLINRVEELQLLAKRISRYEDPIKQFRVL 925 (1352)
Q Consensus 874 ~~~~~~~k~~~~~~~~~v~---~~~e~vl~R~~~l~lL~~ki~~~~~p~~~~~i~ 925 (1352)
+. . + .|. +||+ ++++.|+.|+..|.++++||..|++-...+.++
T Consensus 95 d~-s-----~-tfs-DGVPkEgl~~q~VL~RIgvm~LIr~KV~e~e~~ng~~s~p 141 (145)
T PF06461_consen 95 DN-S-----D-TFS-DGVPKEGLRRQDVLVRIGVMSLIRKKVQEFEHINGTWSFP 141 (145)
T ss_pred CC-C-----C-ccC-CCCccCCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCccCc
Confidence 21 1 1 332 6996 999999999999999999999887655555544
No 142
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.76 E-value=1.4e-06 Score=109.98 Aligned_cols=130 Identities=23% Similarity=0.319 Sum_probs=95.0
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhH-HHHHHHHHHHcC--
Q 000684 174 GGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTL-SNWAKEFRKWLP-- 250 (1352)
Q Consensus 174 ~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L-~nW~~Ef~kw~p-- 250 (1352)
|..+...|.--+..++ .|.+.-+...+|+|||.-.+.+..++... .+..+||+|+.+| .|-.+-+.+++.
T Consensus 80 G~~~ws~QR~WakR~~----rg~SFaiiAPTGvGKTTfg~~~sl~~a~k---gkr~yii~PT~~Lv~Q~~~kl~~~~e~~ 152 (1187)
T COG1110 80 GFRPWSAQRVWAKRLV----RGKSFAIIAPTGVGKTTFGLLMSLYLAKK---GKRVYIIVPTTTLVRQVYERLKKFAEDA 152 (1187)
T ss_pred CCCchHHHHHHHHHHH----cCCceEEEcCCCCchhHHHHHHHHHHHhc---CCeEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 5588889987666665 56666666789999997665555555433 2678999999776 888888888873
Q ss_pred ---CCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhhccCcceEecchhccc
Q 000684 251 ---TMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRL 317 (1352)
Q Consensus 251 ---~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrl 317 (1352)
...++ |||.-..++.-...+-+ ....|+|+|||-+.+.+....|.+.+|++|+||.++-+
T Consensus 153 ~~~~~~~~-yh~~l~~~ekee~le~i------~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~ 215 (1187)
T COG1110 153 GSLDVLVV-YHSALPTKEKEEALERI------ESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAI 215 (1187)
T ss_pred CCcceeee-eccccchHHHHHHHHHH------hcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHH
Confidence 33344 89874443322212111 34589999999999999999999999999999999875
No 143
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.75 E-value=1.4e-07 Score=107.22 Aligned_cols=237 Identities=19% Similarity=0.229 Sum_probs=142.4
Q ss_pred cCCCCCcHHHHHHHHHHHHHhc------CCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHH
Q 000684 172 LRGGKLRDYQLEGLNFLVNSWR------NDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEF 245 (1352)
Q Consensus 172 ~~~~~Lr~yQlegvnwL~~~~~------~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef 245 (1352)
+..+.|-+-|+|+|-+..+.+. ...+.+|.|.+|.||..|+.++|..-...+ ..+++.|-+...+..--.+.+
T Consensus 33 ~~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G-r~r~vwvS~s~dL~~Da~RDl 111 (303)
T PF13872_consen 33 IDSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG-RKRAVWVSVSNDLKYDAERDL 111 (303)
T ss_pred HhcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC-CCceEEEECChhhhhHHHHHH
Confidence 4568999999999999987766 356889999999999999888876555433 234555555556665556666
Q ss_pred HHHcCCCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhH-------hhhhcc-Cc------ceEec
Q 000684 246 RKWLPTMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDK-------AVLSKI-KW------NYLMV 311 (1352)
Q Consensus 246 ~kw~p~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~-------~~L~~i-~w------~~lIV 311 (1352)
...... .+.+..-+. + .... ....+..|+++||..+.... ..|..+ .| .+||+
T Consensus 112 ~DIG~~-~i~v~~l~~----------~-~~~~-~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivf 178 (303)
T PF13872_consen 112 RDIGAD-NIPVHPLNK----------F-KYGD-IIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVF 178 (303)
T ss_pred HHhCCC-cccceechh----------h-ccCc-CCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEe
Confidence 654211 221111111 0 0000 12346789999999987652 233332 33 48899
Q ss_pred chhcccCCcch------HHHHHHHcc----cccCeEEEeccCCCC--CHHHHHHHHhhcCC-CCCCChhHHHHHhccccc
Q 000684 312 DEAHRLKNSEA------QLYTTLSEF----STKNKLLITGTPLQN--SVEELWALLHFLDH-DKFKSKDDFIQNYKNLSS 378 (1352)
Q Consensus 312 DEAHrlKN~~S------kl~~aL~~l----~~~~rlLLTGTPlqN--nl~EL~sLL~fL~p-~~f~~~~~F~~~f~~~~~ 378 (1352)
||||..||..+ +...++..+ ...+.+..|||...+ |+. ++.-|-+-.+ ..|.+..+|......-..
T Consensus 179 DEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgasep~Nma-Ym~RLGLWG~gtpf~~~~~f~~a~~~gGv 257 (303)
T PF13872_consen 179 DECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASEPRNMA-YMSRLGLWGPGTPFPDFDDFLEAMEKGGV 257 (303)
T ss_pred ccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCCCceee-eeeeccccCCCCCCCCHHHHHHHHHhcCc
Confidence 99999999755 455555443 445678899998743 332 1122222222 247788888877654221
Q ss_pred ccHHHHHHHHHhhcchhhhhhhHhhhccCCCcEEEEEEecCCHHHHHHHHH
Q 000684 379 FNENELANLHMELRPHILRRIIKDVEKSLPPKIERILRVEMSPLQKQYYKW 429 (1352)
Q Consensus 379 ~~~~~i~~L~~~L~p~~LRR~k~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~ 429 (1352)
.-.+.+. ......-..++|. .++-..+..++.++|++.|.++|+.
T Consensus 258 ~amE~vA-~dlKa~G~yiaR~-----LSf~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 258 GAMEMVA-MDLKARGMYIARQ-----LSFEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred hHHHHHH-HHHHhcchheeee-----cccCCceEEEEEecCCHHHHHHhcC
Confidence 1111111 1112223334443 2344556778999999999999973
No 144
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=98.75 E-value=6e-09 Score=89.91 Aligned_cols=53 Identities=43% Similarity=0.837 Sum_probs=43.5
Q ss_pred cccceeeeeccCCCCCCcceeEEEecCCCCcccccccccccch-hHHHHHHHHHHH
Q 000684 86 QVERIIADRISKDSSGNVTQEYLVKWKGLSYAEATWEKDEIID-FAQDAIDEYKAR 140 (1352)
Q Consensus 86 ~veRIi~~r~~~~~~~~~~~~YLVKW~gL~Y~~~TWE~~~~i~-~~~~~i~~y~~r 140 (1352)
+|||||+++......+ ..+|||||+|++|++||||..+.+. .++.+|++|.+|
T Consensus 2 ~Ve~Il~~r~~~~~~~--~~~ylVkW~g~~~~~~tWe~~~~l~~~~~~li~~f~~r 55 (55)
T PF00385_consen 2 EVERILDHRVVKGGNK--VYEYLVKWKGYPYSENTWEPEENLKNCFPELIEEFEKR 55 (55)
T ss_dssp EEEEEEEEEEETTEES--EEEEEEEETTSSGGGEEEEEGGGCSSHCHHHHHHHHHH
T ss_pred EEEEEEEEEEeCCCcc--cEEEEEEECCCCCCCCeEeeHHHHhHhhHHHHHHHhCC
Confidence 5899999996533222 4699999999999999999998886 448899999875
No 145
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.70 E-value=1.2e-06 Score=111.16 Aligned_cols=83 Identities=14% Similarity=0.234 Sum_probs=66.0
Q ss_pred cchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCH-HHHHHHHHHhcCCCCCCcEEEeecC
Q 000684 492 SGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKA-ELRHQAMDHFNAPGSEDFCFLLSTR 570 (1352)
Q Consensus 492 SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~-~eR~~~Id~Fn~~~s~~~vfLLSTr 570 (1352)
..|...+.+-+....+.|..|||-+..+..-+.|+.+|...|+++..|+..... +.=..+|.+ ++ ..-.+-|+|.
T Consensus 407 ~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~--AG--~~G~VTIATN 482 (870)
T CHL00122 407 LSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ--AG--RKGSITIATN 482 (870)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh--cC--CCCcEEEecc
Confidence 457777777777888999999999999999999999999999999999997432 333445655 22 2335899999
Q ss_pred CCccCCCC
Q 000684 571 AGGLGINL 578 (1352)
Q Consensus 571 Agg~GINL 578 (1352)
.+|+|.|+
T Consensus 483 MAGRGTDI 490 (870)
T CHL00122 483 MAGRGTDI 490 (870)
T ss_pred ccCCCcCe
Confidence 99999774
No 146
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.62 E-value=1.4e-06 Score=112.77 Aligned_cols=145 Identities=15% Similarity=0.209 Sum_probs=97.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhH-HHHHHHHHHHcCC
Q 000684 173 RGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTL-SNWAKEFRKWLPT 251 (1352)
Q Consensus 173 ~~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L-~nW~~Ef~kw~p~ 251 (1352)
.+.+|-|+|.+++.-|. .+.+++++..+|.|||+.+-.++..-...+ ..++..+|...| .|=.++|..-+.+
T Consensus 116 ~~F~LD~fQ~~a~~~Le----r~esVlV~ApTssGKTvVaeyAi~~al~~~---qrviYTsPIKALsNQKyrdl~~~fgd 188 (1041)
T COG4581 116 YPFELDPFQQEAIAILE----RGESVLVCAPTSSGKTVVAEYAIALALRDG---QRVIYTSPIKALSNQKYRDLLAKFGD 188 (1041)
T ss_pred CCCCcCHHHHHHHHHHh----CCCcEEEEccCCCCcchHHHHHHHHHHHcC---CceEeccchhhhhhhHHHHHHHHhhh
Confidence 36799999999998775 899999999999999999876665544322 237899998666 5566677665543
Q ss_pred C--eEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHh----hHhhhhccCcceEecchhcccCCcc-hHH
Q 000684 252 M--NVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLK----DKAVLSKIKWNYLMVDEAHRLKNSE-AQL 324 (1352)
Q Consensus 252 l--~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~----d~~~L~~i~w~~lIVDEAHrlKN~~-Skl 324 (1352)
. -+-+++|+.. -.....++|+|-|++.. ....+. ....||+||.|.+.... .-.
T Consensus 189 v~~~vGL~TGDv~-----------------IN~~A~clvMTTEILRnMlyrg~~~~~--~i~~ViFDEvHyi~D~eRG~V 249 (1041)
T COG4581 189 VADMVGLMTGDVS-----------------INPDAPCLVMTTEILRNMLYRGSESLR--DIEWVVFDEVHYIGDRERGVV 249 (1041)
T ss_pred hhhhccceeccee-----------------eCCCCceEEeeHHHHHHHhccCccccc--ccceEEEEeeeeccccccchh
Confidence 3 2345556532 23456777777687754 223333 44679999999996543 233
Q ss_pred HHHHHccccc--CeEEEeccC
Q 000684 325 YTTLSEFSTK--NKLLITGTP 343 (1352)
Q Consensus 325 ~~aL~~l~~~--~rlLLTGTP 343 (1352)
+..+--+-.. .-++||||-
T Consensus 250 WEE~Ii~lP~~v~~v~LSATv 270 (1041)
T COG4581 250 WEEVIILLPDHVRFVFLSATV 270 (1041)
T ss_pred HHHHHHhcCCCCcEEEEeCCC
Confidence 4433333233 568999994
No 147
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.51 E-value=4.5e-06 Score=105.84 Aligned_cols=374 Identities=20% Similarity=0.187 Sum_probs=202.3
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEECh-hhHHHHHHHHHHHcCCCe
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPL-STLSNWAKEFRKWLPTMN 253 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~-s~L~nW~~Ef~kw~p~l~ 253 (1352)
..|-+-|..+++-+..........+|.--+|.|||-.-+.++......+ +-+||+||. ++.+|-...|..-++ .+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G---kqvLvLVPEI~Ltpq~~~rf~~rFg-~~ 272 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG---KQVLVLVPEIALTPQLLARFKARFG-AK 272 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC---CEEEEEeccccchHHHHHHHHHHhC-CC
Confidence 4788999999999987653345678999999999988887777776653 468999997 777998888888876 88
Q ss_pred EEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhhccCcceEecchhccc--CCcchHHHHH----
Q 000684 254 VIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRL--KNSEAQLYTT---- 327 (1352)
Q Consensus 254 vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrl--KN~~Skl~~a---- 327 (1352)
+.++|+.-...+....+. . .......|||-|-..+..-.. +-.+|||||=|-- |..+...|.+
T Consensus 273 v~vlHS~Ls~~er~~~W~--~----~~~G~~~vVIGtRSAlF~Pf~-----~LGLIIvDEEHD~sYKq~~~prYhARdvA 341 (730)
T COG1198 273 VAVLHSGLSPGERYRVWR--R----ARRGEARVVIGTRSALFLPFK-----NLGLIIVDEEHDSSYKQEDGPRYHARDVA 341 (730)
T ss_pred hhhhcccCChHHHHHHHH--H----HhcCCceEEEEechhhcCchh-----hccEEEEeccccccccCCcCCCcCHHHHH
Confidence 888888776665433322 1 133467899988776533222 4589999999975 4443322222
Q ss_pred -HHccc-ccCeEEEeccCCCCCHHHHHHHHhhcCCCCCCChhHHHHHhcccccccHHHHHHHHHhhcchhhhhhhHhhh-
Q 000684 328 -LSEFS-TKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIKDVE- 404 (1352)
Q Consensus 328 -L~~l~-~~~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~dv~- 404 (1352)
++.-. .-..+|-|+||- ++ ++.+.... . |.. -++..-..
T Consensus 342 ~~Ra~~~~~pvvLgSATPS---LE---S~~~~~~g-~----------y~~---------------------~~L~~R~~~ 383 (730)
T COG1198 342 VLRAKKENAPVVLGSATPS---LE---SYANAESG-K----------YKL---------------------LRLTNRAGR 383 (730)
T ss_pred HHHHHHhCCCEEEecCCCC---HH---HHHhhhcC-c----------eEE---------------------EEccccccc
Confidence 22222 233477799993 22 21111111 0 000 00000000
Q ss_pred ccCCCcEEEEEEec-------CCHHHHHHHHHHHHHhHHhhh-ccccCchhhHHHHHHHHHHhcCCccccccccCCCCCC
Q 000684 405 KSLPPKIERILRVE-------MSPLQKQYYKWILERNFHDLN-KGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGD 476 (1352)
Q Consensus 405 ~~LPpk~e~iv~v~-------Ls~~Qk~~Yk~il~~~~~~l~-~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~ 476 (1352)
..+|......+.-+ +|+.-.+..+..+++.-..+- -..+|-. .+ -+++.|.|..-++.-+......
T Consensus 384 a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys-~~-----l~C~~Cg~v~~Cp~Cd~~lt~H 457 (730)
T COG1198 384 ARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYA-PL-----LLCRDCGYIAECPNCDSPLTLH 457 (730)
T ss_pred cCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCcc-ce-----eecccCCCcccCCCCCcceEEe
Confidence 01111111111100 222211111111111111100 0001111 11 1334444433322111100000
Q ss_pred CCCCchhhHHHHhhhcchhHHHHHHHHHhhhcCCeEEEEecc--hhHHHHHHHHHHhcCCcEEEEeCCCCHHH--HHHHH
Q 000684 477 TSINDTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQM--VRMLDILAEYMSYKGFQFQRLDGSTKAEL--RHQAM 552 (1352)
Q Consensus 477 ~~~~~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~--~~~ldiL~d~L~~~g~~~~rldGs~~~~e--R~~~I 552 (1352)
.... .-.+..+|.-. .+-...-+-|...|+++-. .+..+.|..+|. +.++.|+|++++... -...+
T Consensus 458 ---~~~~--~L~CH~Cg~~~---~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP--~~rv~r~d~Dtt~~k~~~~~~l 527 (730)
T COG1198 458 ---KATG--QLRCHYCGYQE---PIPQSCPECGSEHLRAVGPGTERIEEELKRLFP--GARIIRIDSDTTRRKGALEDLL 527 (730)
T ss_pred ---cCCC--eeEeCCCCCCC---CCCCCCCCCCCCeeEEecccHHHHHHHHHHHCC--CCcEEEEccccccchhhHHHHH
Confidence 0000 00000000000 0000111224445666542 234444555543 789999999887644 46789
Q ss_pred HHhcCCCCCCcEEEeecCCCccCCCCCccCEEEEcCCCC------------ChhhHHHHhhhhcccCCCceEEEEEEecC
Q 000684 553 DHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDW------------NPQNDLQAMSRAHRIGQQEVVNIYRFVTS 620 (1352)
Q Consensus 553 d~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdW------------NP~~dlQAigRahRiGQkk~V~VyrLvt~ 620 (1352)
+.|.++..+ +||-|....-|.|.+....|.++|.|- ..|...|..|||+|-+-...|.|=..-..
T Consensus 528 ~~~~~ge~d---ILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~ 604 (730)
T COG1198 528 DQFANGEAD---ILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPD 604 (730)
T ss_pred HHHhCCCCC---eeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCC
Confidence 999986555 899999999999999999998877652 24566899999999977777755444443
No 148
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.50 E-value=1.3e-05 Score=104.01 Aligned_cols=77 Identities=23% Similarity=0.231 Sum_probs=59.4
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHH-HHHHHHhcCCCCcEEEEECh-hhHHHHHHHHHHH
Q 000684 171 WLRGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSM-LGFLQNAQQIPGPFLVVVPL-STLSNWAKEFRKW 248 (1352)
Q Consensus 171 ~~~~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~-l~~L~~~~~~~gp~LIVvP~-s~L~nW~~Ef~kw 248 (1352)
+++...+||.|.+.+..+......+.+++|-..||+|||+.+|+. |.|.... +...++++.+.+ +.+.|-.+|+++.
T Consensus 5 ~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~-~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 5 YFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEK-PEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred ecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhc-cccccEEEEcccchHHHHHHHHHHhh
Confidence 444456799999999999999999999999999999999987754 4554432 222345666665 6789999999883
No 149
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.50 E-value=1.2e-05 Score=102.16 Aligned_cols=84 Identities=15% Similarity=0.233 Sum_probs=67.3
Q ss_pred hcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCC-CHHHHHHHHHHhcCCCCCCcEEEeec
Q 000684 491 SSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGST-KAELRHQAMDHFNAPGSEDFCFLLST 569 (1352)
Q Consensus 491 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~-~~~eR~~~Id~Fn~~~s~~~vfLLST 569 (1352)
...|...+.+-+..+++.|..|||-+..+..-+.|...|...|+++..|+..- ..+.-..+|.+ ++. .-.+-|+|
T Consensus 421 ~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~--AG~--~GaVTIAT 496 (939)
T PRK12902 421 EIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQ--AGR--KGAVTIAT 496 (939)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHh--cCC--CCcEEEec
Confidence 35788888888888899999999999999999999999999999999999973 33333445555 322 22589999
Q ss_pred CCCccCCCC
Q 000684 570 RAGGLGINL 578 (1352)
Q Consensus 570 rAgg~GINL 578 (1352)
..+|+|-|+
T Consensus 497 NMAGRGTDI 505 (939)
T PRK12902 497 NMAGRGTDI 505 (939)
T ss_pred cCCCCCcCE
Confidence 999999664
No 150
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.49 E-value=1.7e-05 Score=105.20 Aligned_cols=139 Identities=22% Similarity=0.179 Sum_probs=91.6
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhH-HHHHHHHHHHcCCCeEEEEEcCchhHHHHH-HHh
Q 000684 194 NDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTL-SNWAKEFRKWLPTMNVIVYVGTRASREVCQ-QYE 271 (1352)
Q Consensus 194 ~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L-~nW~~Ef~kw~p~l~vvvy~G~~~~r~~i~-~~e 271 (1352)
.+.+|++-+-+|+|||++++-+...+... .....++|||--.-| .|-..+|..+........ ...+....+ ..+
T Consensus 272 ~~~~G~IWHtqGSGKTlTm~~~A~~l~~~-~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~---~~~s~~~Lk~~l~ 347 (962)
T COG0610 272 DGKGGYIWHTQGSGKTLTMFKLARLLLEL-PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP---KAESTSELKELLE 347 (962)
T ss_pred cCCceEEEeecCCchHHHHHHHHHHHHhc-cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc---cccCHHHHHHHHh
Confidence 44579999999999999988777777765 334457888886555 889999999865444333 223333332 221
Q ss_pred hhccccCCCCccccEEEecHHHHHhhHhh----hhccCcceEecchhcccCCcchHHHHHHHc-ccccCeEEEeccCCCC
Q 000684 272 FYNDKKVGRPIKFNTLLTTYEVVLKDKAV----LSKIKWNYLMVDEAHRLKNSEAQLYTTLSE-FSTKNKLLITGTPLQN 346 (1352)
Q Consensus 272 ~~~~~~~~~~~kf~VlItTye~l~~d~~~----L~~i~w~~lIVDEAHrlKN~~Skl~~aL~~-l~~~~rlLLTGTPlqN 346 (1352)
...-.|+|||-+.+...... ...-+.-+||+|||||--.. .+.+.+.. |....-++.||||+.-
T Consensus 348 ---------~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G--~~~~~~~~~~~~a~~~gFTGTPi~~ 416 (962)
T COG0610 348 ---------DGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYG--ELAKLLKKALKKAIFIGFTGTPIFK 416 (962)
T ss_pred ---------cCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcccc--HHHHHHHHHhccceEEEeeCCcccc
Confidence 11457999999887654321 23345668999999997432 33334333 3446679999999864
Q ss_pred C
Q 000684 347 S 347 (1352)
Q Consensus 347 n 347 (1352)
.
T Consensus 417 ~ 417 (962)
T COG0610 417 E 417 (962)
T ss_pred c
Confidence 3
No 151
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.47 E-value=1.5e-05 Score=104.53 Aligned_cols=85 Identities=12% Similarity=0.090 Sum_probs=59.4
Q ss_pred HHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCC
Q 000684 500 KLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLA 579 (1352)
Q Consensus 500 kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~ 579 (1352)
+.|..+...+.++||+...-+++..+.+.|....+.. ...|... .|.+++++|+..+. .+|+.|....+|||++
T Consensus 638 ~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~---~vLlG~~sFwEGVD~p 711 (820)
T PRK07246 638 KRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQ---QILLGLGSFWEGVDFV 711 (820)
T ss_pred HHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCC---eEEEecchhhCCCCCC
Confidence 3333344566789988888899998888887655544 4555332 25678999987322 4889999999999996
Q ss_pred --ccCEEEEcCCC
Q 000684 580 --TADTVIIFDSD 590 (1352)
Q Consensus 580 --~AdtVIi~Dsd 590 (1352)
.+..|||.-.|
T Consensus 712 ~~~~~~viI~kLP 724 (820)
T PRK07246 712 QADRMIEVITRLP 724 (820)
T ss_pred CCCeEEEEEecCC
Confidence 35666776544
No 152
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.43 E-value=2.3e-05 Score=100.78 Aligned_cols=120 Identities=16% Similarity=0.193 Sum_probs=97.6
Q ss_pred hcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecC
Q 000684 491 SSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTR 570 (1352)
Q Consensus 491 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTr 570 (1352)
...|..++.+-+..+++.|..|||-+.++..-++|+..|..+|+++..|+......+ ..+|.+=- ..-.+-|+|.
T Consensus 610 ~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~E-AeIVA~AG----~~GaVTIATN 684 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKE-AEIVAEAG----QPGTVTIATN 684 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhH-HHHHHhcC----CCCcEEEecc
Confidence 457888888888999999999999999999999999999999999999877643222 33444322 2235899999
Q ss_pred CCccCCCCC--------ccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEE
Q 000684 571 AGGLGINLA--------TADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIY 615 (1352)
Q Consensus 571 Agg~GINL~--------~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~Vy 615 (1352)
.+|+|-|+. ..=+||.-..+-|...|.|..||++|.|.......|
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~ 737 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY 737 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE
Confidence 999998875 234788889999999999999999999998766544
No 153
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.42 E-value=0.00012 Score=97.78 Aligned_cols=87 Identities=16% Similarity=0.257 Sum_probs=61.2
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhH-HH-HHHH---HHH
Q 000684 173 RGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTL-SN-WAKE---FRK 247 (1352)
Q Consensus 173 ~~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L-~n-W~~E---f~k 247 (1352)
.+.+.||-|.+.++.+...+..+..+++-..+|+|||+.-+.-+.+ ......+|++|-+++..| .| +.++ +.+
T Consensus 254 ~~~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~--~a~~~~~~vvIsT~T~~LQ~Ql~~kDiP~L~~ 331 (928)
T PRK08074 254 PKYEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAY--FAKKKEEPVVISTYTIQLQQQLLEKDIPLLQK 331 (928)
T ss_pred CCCcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHH--HhhccCCeEEEEcCCHHHHHHHHHhhHHHHHH
Confidence 4569999999999999999888888888999999999875433322 222334788888888777 33 3333 344
Q ss_pred HcC-CCeEEEEEcCc
Q 000684 248 WLP-TMNVIVYVGTR 261 (1352)
Q Consensus 248 w~p-~l~vvvy~G~~ 261 (1352)
-+| ++++++..|..
T Consensus 332 ~~~~~~~~~~lKGr~ 346 (928)
T PRK08074 332 IFPFPVEAALLKGRS 346 (928)
T ss_pred HcCCCceEEEEEccc
Confidence 444 46777666543
No 154
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.39 E-value=3.9e-06 Score=102.49 Aligned_cols=140 Identities=18% Similarity=0.300 Sum_probs=92.9
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHH-HHHHHHHHhcCCCCcEEEEEChhhH-HHHHHHHHHHcCCC
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSV-SMLGFLQNAQQIPGPFLVVVPLSTL-SNWAKEFRKWLPTM 252 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaI-a~l~~L~~~~~~~gp~LIVvP~s~L-~nW~~Ef~kw~p~l 252 (1352)
.+|-|+|..++.-+ .++.++++..-+..|||+.|= |+...|+..+ .++.-.|...| .|=.+||..=+.+
T Consensus 128 F~LDpFQ~~aI~Ci----dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ----RVIYTSPIKALSNQKYREl~~EF~D- 198 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCI----DRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ----RVIYTSPIKALSNQKYRELLEEFKD- 198 (1041)
T ss_pred cccCchHhhhhhhh----cCCceEEEEeecCCCcchHHHHHHHHHHHhcC----eEEeeChhhhhcchhHHHHHHHhcc-
Confidence 47889999888644 588999999999999999864 4444555533 57888887777 5556777655443
Q ss_pred eEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHh----hHhhhhccCcceEecchhcccCCcchH-HHH-
Q 000684 253 NVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLK----DKAVLSKIKWNYLMVDEAHRLKNSEAQ-LYT- 326 (1352)
Q Consensus 253 ~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~----d~~~L~~i~w~~lIVDEAHrlKN~~Sk-l~~- 326 (1352)
|...+|+.. ..+....+|+|-|++.. ..+.++.+.| ||+||.|+++..+-- .+.
T Consensus 199 -VGLMTGDVT-----------------InP~ASCLVMTTEILRsMLYRGSEvmrEVaW--VIFDEIHYMRDkERGVVWEE 258 (1041)
T KOG0948|consen 199 -VGLMTGDVT-----------------INPDASCLVMTTEILRSMLYRGSEVMREVAW--VIFDEIHYMRDKERGVVWEE 258 (1041)
T ss_pred -cceeeccee-----------------eCCCCceeeeHHHHHHHHHhccchHhheeee--EEeeeehhccccccceeeee
Confidence 334455532 23456788888887754 4567777766 999999999765321 111
Q ss_pred HHHcccc-cCeEEEeccC
Q 000684 327 TLSEFST-KNKLLITGTP 343 (1352)
Q Consensus 327 aL~~l~~-~~rlLLTGTP 343 (1352)
.+--+.. -+-++||||-
T Consensus 259 TIIllP~~vr~VFLSATi 276 (1041)
T KOG0948|consen 259 TIILLPDNVRFVFLSATI 276 (1041)
T ss_pred eEEeccccceEEEEeccC
Confidence 1112222 3348899983
No 155
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.38 E-value=2.8e-05 Score=97.53 Aligned_cols=161 Identities=17% Similarity=0.194 Sum_probs=104.8
Q ss_pred cHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChh-hHHHHHHHHHH-H-cCCCeE
Q 000684 178 RDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLS-TLSNWAKEFRK-W-LPTMNV 254 (1352)
Q Consensus 178 r~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s-~L~nW~~Ef~k-w-~p~l~v 254 (1352)
-.+|.+-+ .....+..++|...+-.|||...--++....+. ...+.++.|+|.. ++.|-..++.. + ++.+..
T Consensus 513 d~WQ~elL----DsvDr~eSavIVAPTSaGKTfisfY~iEKVLRe-sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~r 587 (1330)
T KOG0949|consen 513 DEWQRELL----DSVDRNESAVIVAPTSAGKTFISFYAIEKVLRE-SDSDVVIYVAPTKALVNQVSANVYARFDTKTFLR 587 (1330)
T ss_pred cHHHHHHh----hhhhcccceEEEeeccCCceeccHHHHHHHHhh-cCCCEEEEecchHHHhhhhhHHHHHhhccCcccc
Confidence 34565544 344688899999999999999888788776654 4568899999985 45666655543 3 233322
Q ss_pred EEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHh----hhhcc-CcceEecchhcccCCc-chHHHHHH
Q 000684 255 IVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKA----VLSKI-KWNYLMVDEAHRLKNS-EAQLYTTL 328 (1352)
Q Consensus 255 vvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~----~L~~i-~w~~lIVDEAHrlKN~-~Skl~~aL 328 (1352)
.+ ..--...++|.. .+..+.|+||-++.+-.-.- ....+ +..+||+||.|.+.|. .+.+...+
T Consensus 588 g~----sl~g~ltqEYsi-------np~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eql 656 (1330)
T KOG0949|consen 588 GV----SLLGDLTQEYSI-------NPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQL 656 (1330)
T ss_pred ch----hhHhhhhHHhcC-------CchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHH
Confidence 21 111122333321 34578999999987643211 11111 4589999999999886 45566666
Q ss_pred HcccccCeEEEeccCCCCCHHHHHHHHh
Q 000684 329 SEFSTKNKLLITGTPLQNSVEELWALLH 356 (1352)
Q Consensus 329 ~~l~~~~rlLLTGTPlqNnl~EL~sLL~ 356 (1352)
..+..-.-|.|+||- +|+..+.-.++
T Consensus 657 l~li~CP~L~LSATi--gN~~l~qkWln 682 (1330)
T KOG0949|consen 657 LLLIPCPFLVLSATI--GNPNLFQKWLN 682 (1330)
T ss_pred HHhcCCCeeEEeccc--CCHHHHHHHHH
Confidence 666666679999994 67777666665
No 156
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.31 E-value=0.00024 Score=89.88 Aligned_cols=78 Identities=19% Similarity=0.212 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHH-HHHHHHHhcCCCCcEEEEEChhhH-HHHHHHHHHHc-----CCCe
Q 000684 181 QLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVS-MLGFLQNAQQIPGPFLVVVPLSTL-SNWAKEFRKWL-----PTMN 253 (1352)
Q Consensus 181 QlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa-~l~~L~~~~~~~gp~LIVvP~s~L-~nW~~Ef~kw~-----p~l~ 253 (1352)
|.+.+.++...+.++..+++-..+|+|||+..+. .+.++... ..+++||++|+..| .|+.+++.... ..++
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~--~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~ 79 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER--PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQ 79 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc--cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCee
Confidence 7888888988888888899999999999988654 34444321 24689999998655 88888876554 2466
Q ss_pred EEEEEcC
Q 000684 254 VIVYVGT 260 (1352)
Q Consensus 254 vvvy~G~ 260 (1352)
+++..|.
T Consensus 80 ~~~lkGr 86 (636)
T TIGR03117 80 AGFFPGS 86 (636)
T ss_pred EEEEECC
Confidence 6665554
No 157
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.21 E-value=0.00022 Score=92.18 Aligned_cols=104 Identities=20% Similarity=0.229 Sum_probs=75.8
Q ss_pred hhhcCCeEEEEecchhHHHHHHHHHHhcCCc-EEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCc--c
Q 000684 505 LHETKHRVLIFSQMVRMLDILAEYMSYKGFQ-FQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLAT--A 581 (1352)
Q Consensus 505 l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~-~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~--A 581 (1352)
+...+.++|||...-.++..+.++|...... .+...|..+ +...+++|.+.+.+ .|++.+....+|||+.. +
T Consensus 475 ~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~--~~lv~~gsf~EGVD~~g~~l 549 (654)
T COG1199 475 LKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG--LILVGGGSFWEGVDFPGDAL 549 (654)
T ss_pred HhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC--eEEEeeccccCcccCCCCCe
Confidence 3445558999999999999999999866553 444555544 34789999986554 68999999999999986 5
Q ss_pred CEEEEcCCCCC-hh-----------------------------hHHHHhhhhcccCCCceEE
Q 000684 582 DTVIIFDSDWN-PQ-----------------------------NDLQAMSRAHRIGQQEVVN 613 (1352)
Q Consensus 582 dtVIi~DsdWN-P~-----------------------------~dlQAigRahRiGQkk~V~ 613 (1352)
..|||.-.|+= |. ...||+||+.|--+.+-|.
T Consensus 550 ~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~i 611 (654)
T COG1199 550 RLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVI 611 (654)
T ss_pred eEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEE
Confidence 78888766652 21 1269999999965555543
No 158
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.21 E-value=4.7e-05 Score=93.39 Aligned_cols=250 Identities=18% Similarity=0.284 Sum_probs=135.8
Q ss_pred CCccCCCCCcHHHHHHHHHHHHHhcC------CCcEEEEcCCCCcHH--HHHHHHHHHHHHhcCCCCcEEEEEChhhHHH
Q 000684 169 PEWLRGGKLRDYQLEGLNFLVNSWRN------DTNVILADEMGLGKT--VQSVSMLGFLQNAQQIPGPFLVVVPLSTLSN 240 (1352)
Q Consensus 169 P~~~~~~~Lr~yQlegvnwL~~~~~~------~~~~ILADEmGLGKT--lqaIa~l~~L~~~~~~~gp~LIVvP~s~L~n 240 (1352)
|. +..+-|-..|+++|-+..+.+.. .-+.+|.|.-|.||- +..|-|=.||.- ..+...|-|...+-..
T Consensus 258 P~-i~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkG---RKrAlW~SVSsDLKfD 333 (1300)
T KOG1513|consen 258 PS-IDSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKG---RKRALWFSVSSDLKFD 333 (1300)
T ss_pred cc-CcccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcc---cceeEEEEeccccccc
Confidence 44 45578999999999999876542 226788998888875 445555556542 2333445555555565
Q ss_pred HHHHHHHHc-CCCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhh--------Hhhhhcc-Cc----
Q 000684 241 WAKEFRKWL-PTMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKD--------KAVLSKI-KW---- 306 (1352)
Q Consensus 241 W~~Ef~kw~-p~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d--------~~~L~~i-~w---- 306 (1352)
=++.+.... +.+.| +.=++-. |.-. ..+.+...+-.|+++||..+.-+ ...|+.+ .|
T Consensus 334 AERDL~DigA~~I~V--~alnK~K------YakI-ss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~ 404 (1300)
T KOG1513|consen 334 AERDLRDIGATGIAV--HALNKFK------YAKI-SSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGED 404 (1300)
T ss_pred hhhchhhcCCCCccc--eehhhcc------cccc-cccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhc
Confidence 666666552 23222 2211110 0000 01123455778999999988743 2233322 34
Q ss_pred --ceEecchhcccCC-------cchHHHHHHHcc----cccCeEEEeccCCC--CCHHHHHHHHhhcC-CCCCCChhHHH
Q 000684 307 --NYLMVDEAHRLKN-------SEAQLYTTLSEF----STKNKLLITGTPLQ--NSVEELWALLHFLD-HDKFKSKDDFI 370 (1352)
Q Consensus 307 --~~lIVDEAHrlKN-------~~Skl~~aL~~l----~~~~rlLLTGTPlq--Nnl~EL~sLL~fL~-p~~f~~~~~F~ 370 (1352)
.+||+||||+.|| ..++..+.+..+ ...+.+..+||-.. .|+.-+-- |-+-. ...|+.+.+|.
T Consensus 405 feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAsEPrNMaYM~R-LGlWGegtaf~eF~eFi 483 (1300)
T KOG1513|consen 405 FEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGASEPRNMAYMVR-LGLWGEGTAFPEFEEFI 483 (1300)
T ss_pred cceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCCCcchhhhhhh-hccccCCCcCccHHHHH
Confidence 5899999999999 234555555443 44555777777432 23322211 22222 23467777776
Q ss_pred HHhcccccccHHHHHHHHHhhcchhhhhhhHhhhccCCCcEEEEEEecCCHHHHHHHHHHHHHhHHhh
Q 000684 371 QNYKNLSSFNENELANLHMELRPHILRRIIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDL 438 (1352)
Q Consensus 371 ~~f~~~~~~~~~~i~~L~~~L~p~~LRR~k~dv~~~LPpk~e~iv~v~Ls~~Qk~~Yk~il~~~~~~l 438 (1352)
.....-.. ....+-.....++-.-+-|- .++-.....|-.|+|++.-+..|.....-..+++
T Consensus 484 ~AvEkRGv-GAMEIVAMDMK~rGmYiARQ-----LSFkgVsFrieEv~ls~eF~k~Yn~a~~LW~ea~ 545 (1300)
T KOG1513|consen 484 HAVEKRGV-GAMEIVAMDMKLRGMYIARQ-----LSFKGVSFRIEEVPLSKEFRKVYNRAAELWAEAL 545 (1300)
T ss_pred HHHHhcCC-ceeeeeehhhhhhhhhhhhh-----ccccCceEEEEecccCHHHHHHHHHHHHHHHHHH
Confidence 55432110 11111112222222222221 1233445678889999999999987655444443
No 159
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=98.21 E-value=3.1e-06 Score=97.42 Aligned_cols=97 Identities=21% Similarity=0.308 Sum_probs=88.5
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhc---CCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEE
Q 000684 508 TKHRVLIFSQMVRMLDILAEYMSYK---GFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTV 584 (1352)
Q Consensus 508 ~g~KVLIFSq~~~~ldiL~d~L~~~---g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtV 584 (1352)
.-.+.||||....-.|-|+.+|..+ .|.++.++|...+.+|.+.|+.|.. .+..|||+|+++.+||+++..-.+
T Consensus 504 ~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk---~dvkflictdvaargldi~g~p~~ 580 (725)
T KOG0349|consen 504 AMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKK---FDVKFLICTDVAARGLDITGLPFM 580 (725)
T ss_pred ccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhh---cCeEEEEEehhhhccccccCCceE
Confidence 3468999999999999999999876 4789999999999999999999998 455699999999999999999999
Q ss_pred EEcCCCCChhhHHHHhhhhcccC
Q 000684 585 IIFDSDWNPQNDLQAMSRAHRIG 607 (1352)
Q Consensus 585 Ii~DsdWNP~~dlQAigRahRiG 607 (1352)
|....+-.-++|.+||||++|.-
T Consensus 581 invtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 581 INVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred EEEecCcccchhhhhhhccchhh
Confidence 99999999999999999988864
No 160
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.20 E-value=1.6e-05 Score=102.87 Aligned_cols=144 Identities=17% Similarity=0.259 Sum_probs=92.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhH-HHHHH---------HHHHHcCC--CeEEEEEcCch-
Q 000684 196 TNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTL-SNWAK---------EFRKWLPT--MNVIVYVGTRA- 262 (1352)
Q Consensus 196 ~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L-~nW~~---------Ef~kw~p~--l~vvvy~G~~~- 262 (1352)
.+..+.++||+|||.+++..+..|....+. ..||||||...+ ..... -|..-+++ +.+.+|.+.+.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~-~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~ 138 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGL-FKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKK 138 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCC-cEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccc
Confidence 477899999999999999999888776543 569999998543 32222 23333333 44555654331
Q ss_pred --hH----HHHHHHhhhccccCCCCccccEEEecHHHHHhhHh--------hhhc--cCc-------ceEecchhcccCC
Q 000684 263 --SR----EVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKA--------VLSK--IKW-------NYLMVDEAHRLKN 319 (1352)
Q Consensus 263 --~r----~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~--------~L~~--i~w-------~~lIVDEAHrlKN 319 (1352)
.| ..++. |.... .......+|+|+|-+++.++.. .+.. ..| -+||+||+|++..
T Consensus 139 k~gr~~~~~~i~~--Fa~~~-~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~ 215 (986)
T PRK15483 139 KSGRKNFPAQLSN--FVKAS-RQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPR 215 (986)
T ss_pred ccccccChHHHHH--HHhcc-ccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCc
Confidence 11 12222 21111 0112257999999998866421 0111 233 3799999999955
Q ss_pred cchHHHHHHHcccccCeEEEeccCC
Q 000684 320 SEAQLYTTLSEFSTKNKLLITGTPL 344 (1352)
Q Consensus 320 ~~Skl~~aL~~l~~~~rlLLTGTPl 344 (1352)
..+.++++..+...+.|.-|||--
T Consensus 216 -~~k~~~~i~~lnpl~~lrysAT~~ 239 (986)
T PRK15483 216 -DNKFYQAIEALKPQMIIRFGATFP 239 (986)
T ss_pred -chHHHHHHHhcCcccEEEEeeecC
Confidence 345778999999999999999963
No 161
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.19 E-value=8.3e-05 Score=90.30 Aligned_cols=94 Identities=18% Similarity=0.227 Sum_probs=60.3
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEEEEcC----CCCC-----------hhhHH
Q 000684 533 GFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFD----SDWN-----------PQNDL 597 (1352)
Q Consensus 533 g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~D----sdWN-----------P~~dl 597 (1352)
++.+.-|...++..... .-|+....+..-++++|..+...|.+...-.||=.- .-+| |..-.
T Consensus 597 ~L~vlpiYSQLp~dlQ~---kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~A 673 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQA---KIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQA 673 (1042)
T ss_pred ceEEEeehhhCchhhhh---hhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhc
Confidence 34444445555544333 335544455667899999999999999887776321 1223 33334
Q ss_pred HHhhhhcccCCCceEEEEEEecCCCHHHHHHH
Q 000684 598 QAMSRAHRIGQQEVVNIYRFVTSKSVEEDILE 629 (1352)
Q Consensus 598 QAigRahRiGQkk~V~VyrLvt~~TiEE~Il~ 629 (1352)
+|--|++|.|.+.+-..|||+|++++...|+.
T Consensus 674 nA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~ 705 (1042)
T KOG0924|consen 674 NADQRAGRAGRTGPGTCYRLYTEDAYKNEMLP 705 (1042)
T ss_pred cchhhccccCCCCCcceeeehhhhHHHhhccc
Confidence 45556666666667888999999998877764
No 162
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=98.19 E-value=1.5e-06 Score=74.80 Aligned_cols=51 Identities=49% Similarity=0.866 Sum_probs=40.8
Q ss_pred cccceeeeeccCCCCCCcceeEEEecCCCCcccccccccccchhHHHHHHHHHH
Q 000684 86 QVERIIADRISKDSSGNVTQEYLVKWKGLSYAEATWEKDEIIDFAQDAIDEYKA 139 (1352)
Q Consensus 86 ~veRIi~~r~~~~~~~~~~~~YLVKW~gL~Y~~~TWE~~~~i~~~~~~i~~y~~ 139 (1352)
.||+||++|.... ....+|||||+|++|.+||||..+.+...+..|++|..
T Consensus 4 ~ve~Il~~r~~~~---~~~~~y~VkW~g~~~~~~tWe~~~~l~~~~~~i~~~~~ 54 (55)
T cd00024 4 EVEKILDHRKKKD---GGEYEYLVKWKGYSYSEDTWEPEENLEDCKELIDEFKK 54 (55)
T ss_pred eEeeeeeeeecCC---CCcEEEEEEECCCCCccCccccHHHhCchHHHHHHHHh
Confidence 3699999986422 24579999999999999999998877655678888764
No 163
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.17 E-value=0.00017 Score=92.94 Aligned_cols=128 Identities=21% Similarity=0.305 Sum_probs=89.3
Q ss_pred hhHHHHHHHHHhhhc--CCeEEEEecchhHHHHHHHHHH----hc---CCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcE
Q 000684 494 KLVILDKLLVRLHET--KHRVLIFSQMVRMLDILAEYMS----YK---GFQFQRLDGSTKAELRHQAMDHFNAPGSEDFC 564 (1352)
Q Consensus 494 Kl~~L~kLL~~l~~~--g~KVLIFSq~~~~ldiL~d~L~----~~---g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~v 564 (1352)
...++..++..+.+. ...||||-.-...+..+.+.|. .. .+-...+|++++..+.+. -|+.+..+..-
T Consensus 396 d~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~---VF~~pp~g~RK 472 (924)
T KOG0920|consen 396 DYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQA---VFKRPPKGTRK 472 (924)
T ss_pred cHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHH---hcCCCCCCcch
Confidence 445666666666543 3589999988776666666664 22 366788999999877664 47777777777
Q ss_pred EEeecCCCccCCCCCccCEEE--------EcCC---------CC-ChhhHHHHhhhhcccCCCceEEEEEEecCCCHHHH
Q 000684 565 FLLSTRAGGLGINLATADTVI--------IFDS---------DW-NPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEED 626 (1352)
Q Consensus 565 fLLSTrAgg~GINL~~AdtVI--------i~Ds---------dW-NP~~dlQAigRahRiGQkk~V~VyrLvt~~TiEE~ 626 (1352)
++++|..+...|.+.++-.|| .||+ .| +-.+-.||.|||+|. .+-..|+|+++.-.+-.
T Consensus 473 IIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv---~~G~cy~L~~~~~~~~~ 549 (924)
T KOG0920|consen 473 IILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV---RPGICYHLYTRSRYEKL 549 (924)
T ss_pred hhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc---cCCeeEEeechhhhhhc
Confidence 999999999999998776665 3444 23 233446877777775 45567999998755543
Q ss_pred H
Q 000684 627 I 627 (1352)
Q Consensus 627 I 627 (1352)
+
T Consensus 550 ~ 550 (924)
T KOG0920|consen 550 M 550 (924)
T ss_pred c
Confidence 3
No 164
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=98.11 E-value=0.00016 Score=91.71 Aligned_cols=152 Identities=20% Similarity=0.174 Sum_probs=87.9
Q ss_pred CCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHH-HHHHHHHHHhcCCCCcEEEEEChhhH-HHHHHHHHHHcC--C
Q 000684 176 KLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQS-VSMLGFLQNAQQIPGPFLVVVPLSTL-SNWAKEFRKWLP--T 251 (1352)
Q Consensus 176 ~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqa-Ia~l~~L~~~~~~~gp~LIVvP~s~L-~nW~~Ef~kw~p--~ 251 (1352)
.++++|.+.+.-- ....+.|+|.+..++-|||+.+ |..+..+... .+-.|.|.|--.+ .-=..++..+.- +
T Consensus 223 ~~fewq~ecls~~--~~~e~~nliys~Pts~gktlvaeilml~~~l~~---rr~~llilp~vsiv~Ek~~~l~~~~~~~G 297 (1008)
T KOG0950|consen 223 KLFEWQAECLSLP--RLLERKNLIYSLPTSAGKTLVAEILMLREVLCR---RRNVLLILPYVSIVQEKISALSPFSIDLG 297 (1008)
T ss_pred HHHHHHHHHhcch--hhhcccceEEeCCCccchHHHHHHHHHHHHHHH---hhceeEecceeehhHHHHhhhhhhccccC
Confidence 4556666655322 1236789999999999999885 3333333322 2346777775333 222233333321 4
Q ss_pred CeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhhc----cCcceEecchhcccCC--cchHHH
Q 000684 252 MNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSK----IKWNYLMVDEAHRLKN--SEAQLY 325 (1352)
Q Consensus 252 l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~----i~w~~lIVDEAHrlKN--~~Skl~ 325 (1352)
+.|-.|.|.-. .......-+|.|+|-|........|-. .....|||||-|-+.. .+.-+-
T Consensus 298 ~~ve~y~g~~~--------------p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE 363 (1008)
T KOG0950|consen 298 FPVEEYAGRFP--------------PEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILE 363 (1008)
T ss_pred CcchhhcccCC--------------CCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHH
Confidence 66666765432 122344678999999987766554422 1357899999999843 333322
Q ss_pred ----HHHHcccccC--eEEEeccCCCC
Q 000684 326 ----TTLSEFSTKN--KLLITGTPLQN 346 (1352)
Q Consensus 326 ----~aL~~l~~~~--rlLLTGTPlqN 346 (1352)
+.+..-.... .+++|+|-..|
T Consensus 364 ~~l~k~~y~~~~~~~~iIGMSATi~N~ 390 (1008)
T KOG0950|consen 364 LLLAKILYENLETSVQIIGMSATIPNN 390 (1008)
T ss_pred HHHHHHHHhccccceeEeeeecccCCh
Confidence 2222222222 58999997433
No 165
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.09 E-value=0.00011 Score=92.83 Aligned_cols=114 Identities=17% Similarity=0.329 Sum_probs=83.8
Q ss_pred cchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCC
Q 000684 492 SGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRA 571 (1352)
Q Consensus 492 SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrA 571 (1352)
+....+...|+..+ ..|++|.|||....+.+++++++...+.++..++|..+..+. +.+ ..+-+++-|.+
T Consensus 266 ~~~~tF~~~L~~~L-~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W-----~~~~VviYT~~ 335 (824)
T PF02399_consen 266 NDETTFFSELLARL-NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW-----KKYDVVIYTPV 335 (824)
T ss_pred cchhhHHHHHHHHH-hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc-----cceeEEEEece
Confidence 34445666666666 468899999999999999999999999999999987766522 222 23457888888
Q ss_pred CccCCCCCc--cCEEEEc--CCCCChhh--HHHHhhhhcccCCCceEEEEE
Q 000684 572 GGLGINLAT--ADTVIIF--DSDWNPQN--DLQAMSRAHRIGQQEVVNIYR 616 (1352)
Q Consensus 572 gg~GINL~~--AdtVIi~--DsdWNP~~--dlQAigRahRiGQkk~V~Vyr 616 (1352)
...|+++-. -|.|..| .....|.. ..|.+||+-.++. +++.||.
T Consensus 336 itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~-~ei~v~~ 385 (824)
T PF02399_consen 336 ITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLD-NEIYVYI 385 (824)
T ss_pred EEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhcc-CeEEEEE
Confidence 889988864 5777666 33344554 5899999999875 4455554
No 166
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.08 E-value=1.3e-05 Score=82.05 Aligned_cols=130 Identities=18% Similarity=0.137 Sum_probs=71.4
Q ss_pred cCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHHHHHcCCCeEEEEEcCchhHHHHHHHhh
Q 000684 193 RNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRKWLPTMNVIVYVGTRASREVCQQYEF 272 (1352)
Q Consensus 193 ~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef~kw~p~l~vvvy~G~~~~r~~i~~~e~ 272 (1352)
.++.--+|-.-.|.|||...+.-+.. +.-...+.+||++|+.++ .+|..+...+..+. ++-+.-.+.
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~--~~i~~~~rvLvL~PTRvv---a~em~~aL~~~~~~-~~t~~~~~~------- 68 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVR--EAIKRRLRVLVLAPTRVV---AEEMYEALKGLPVR-FHTNARMRT------- 68 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHH--HHHHTT--EEEEESSHHH---HHHHHHHTTTSSEE-EESTTSS---------
T ss_pred CCCceeEEecCCCCCCcccccHHHHH--HHHHccCeEEEecccHHH---HHHHHHHHhcCCcc-cCceeeecc-------
Confidence 35555678888999999987754322 122235679999999887 34555555566533 332221111
Q ss_pred hccccCCCCccccEEEecHHHHHhhH-hhhhccCcceEecchhcccCCcchHHHHH-HHcccc---cCeEEEeccC
Q 000684 273 YNDKKVGRPIKFNTLLTTYEVVLKDK-AVLSKIKWNYLMVDEAHRLKNSEAQLYTT-LSEFST---KNKLLITGTP 343 (1352)
Q Consensus 273 ~~~~~~~~~~kf~VlItTye~l~~d~-~~L~~i~w~~lIVDEAHrlKN~~Skl~~a-L~~l~~---~~rlLLTGTP 343 (1352)
....-.|-+++|.++.... .......|++||+||||-. .+.|-.... +..+.. ...+++||||
T Consensus 69 -------~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATP 136 (148)
T PF07652_consen 69 -------HFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATP 136 (148)
T ss_dssp ---------SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-
T ss_pred -------ccCCCcccccccHHHHHHhcCcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCC
Confidence 1234567788888775532 2334458999999999985 333333222 333322 2468999999
No 167
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=98.08 E-value=2.1e-06 Score=73.79 Aligned_cols=47 Identities=26% Similarity=0.497 Sum_probs=36.6
Q ss_pred CCCCCCCCCC--CcceEEEEecCCccccccccchhhhhcccchHHHHHHHh
Q 000684 2 SHLFDSEPDW--NEMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYAK 50 (1352)
Q Consensus 2 ~~~~d~~~~~--~~~eyLVKWkg~SylH~tW~s~~~L~~~~g~kk~~n~~k 50 (1352)
+.|.+.+... +..+|||||+|++|.||||++++.|... .+.+.+|.+
T Consensus 6 e~Il~~r~~~~~~~~~y~VkW~g~~~~~~tWe~~~~l~~~--~~~i~~~~~ 54 (55)
T cd00024 6 EKILDHRKKKDGGEYEYLVKWKGYSYSEDTWEPEENLEDC--KELIDEFKK 54 (55)
T ss_pred eeeeeeeecCCCCcEEEEEEECCCCCccCccccHHHhCch--HHHHHHHHh
Confidence 4566666666 7899999999999999999999999754 345555543
No 168
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.05 E-value=0.00041 Score=85.40 Aligned_cols=108 Identities=21% Similarity=0.270 Sum_probs=77.5
Q ss_pred eEEEEecchhHHHHHHHHHHh----cCCc----EEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccC
Q 000684 511 RVLIFSQMVRMLDILAEYMSY----KGFQ----FQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATAD 582 (1352)
Q Consensus 511 KVLIFSq~~~~ldiL~d~L~~----~g~~----~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~Ad 582 (1352)
=+|||=.-....+.+.+.|.. .+-. +.-+.|.++.++..+ -|.....+..-+++||+.+...|.+...-
T Consensus 260 DILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~r---vF~p~p~g~RKvIlsTNIAETSlTI~GI~ 336 (674)
T KOG0922|consen 260 DILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSR---VFDPAPPGKRKVILSTNIAETSLTIDGIR 336 (674)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhc---cccCCCCCcceEEEEcceeeeeEEecceE
Confidence 488888777655555555543 2222 467899999977654 46555546667899999999999998877
Q ss_pred EEEEcCC------CCCh-----------hhHHHHhhhhcccCCCceEEEEEEecCCCH
Q 000684 583 TVIIFDS------DWNP-----------QNDLQAMSRAHRIGQQEVVNIYRFVTSKSV 623 (1352)
Q Consensus 583 tVIi~Ds------dWNP-----------~~dlQAigRahRiGQkk~V~VyrLvt~~Ti 623 (1352)
+|| |+ -||| ..-.||.-|++|.|.+.+..+|||.++.-+
T Consensus 337 YVV--DsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 337 YVV--DSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY 392 (674)
T ss_pred EEE--cCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH
Confidence 775 33 2344 345678888888888889999999998765
No 169
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.01 E-value=0.00035 Score=90.36 Aligned_cols=111 Identities=22% Similarity=0.297 Sum_probs=77.3
Q ss_pred CCeEEEEecchhHHHHHHHHHHh----cCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEE
Q 000684 509 KHRVLIFSQMVRMLDILAEYMSY----KGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTV 584 (1352)
Q Consensus 509 g~KVLIFSq~~~~ldiL~d~L~~----~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtV 584 (1352)
..-+|||-.-.+..+-....|.. ..+..+-|+|..+.++..+ -|+....+..-++++|+.+..+|.+...-+|
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~r---vF~p~~~~~RKVVlATNIAETSLTI~gIr~V 335 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVR---VFEPAPGGKRKVVLATNIAETSLTIPGIRYV 335 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHh---hcCCCCCCcceEEEEccccccceeeCCeEEE
Confidence 34689998888877777777765 4578899999999988877 4554333434489999999999999988887
Q ss_pred EEcCC------CCChhhH-----------HHHhhhhcccCCCceEEEEEEecCCCHH
Q 000684 585 IIFDS------DWNPQND-----------LQAMSRAHRIGQQEVVNIYRFVTSKSVE 624 (1352)
Q Consensus 585 Ii~Ds------dWNP~~d-----------lQAigRahRiGQkk~V~VyrLvt~~TiE 624 (1352)
| |+ -|||..- ..|.=|++|.|.+.+-..|||.+++..+
T Consensus 336 I--DsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~ 390 (845)
T COG1643 336 I--DSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFL 390 (845)
T ss_pred e--cCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHH
Confidence 6 22 2233221 2233344444555567789999986554
No 170
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=97.98 E-value=1.7e-06 Score=74.60 Aligned_cols=47 Identities=23% Similarity=0.396 Sum_probs=32.8
Q ss_pred CCCCCCCCCCcc---eEEEEecCCccccccccchhhhhcccchHHHHHHHh
Q 000684 3 HLFDSEPDWNEM---EFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYAK 50 (1352)
Q Consensus 3 ~~~d~~~~~~~~---eyLVKWkg~SylH~tW~s~~~L~~~~g~kk~~n~~k 50 (1352)
.|.|.....+.. +|||||+|++|.||||++++.|... --..+..|.+
T Consensus 5 ~Il~~r~~~~~~~~~~ylVkW~g~~~~~~tWe~~~~l~~~-~~~li~~f~~ 54 (55)
T PF00385_consen 5 RILDHRVVKGGNKVYEYLVKWKGYPYSENTWEPEENLKNC-FPELIEEFEK 54 (55)
T ss_dssp EEEEEEEETTEESEEEEEEEETTSSGGGEEEEEGGGCSSH-CHHHHHHHHH
T ss_pred EEEEEEEeCCCcccEEEEEEECCCCCCCCeEeeHHHHhHh-hHHHHHHHhC
Confidence 344444444444 9999999999999999999999653 1123555554
No 171
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=97.93 E-value=1e-05 Score=69.43 Aligned_cols=50 Identities=44% Similarity=0.774 Sum_probs=40.2
Q ss_pred ccceeeeeccCCCCCCcceeEEEecCCCCcccccccccccchhHHHHHHHHHHH
Q 000684 87 VERIIADRISKDSSGNVTQEYLVKWKGLSYAEATWEKDEIIDFAQDAIDEYKAR 140 (1352)
Q Consensus 87 veRIi~~r~~~~~~~~~~~~YLVKW~gL~Y~~~TWE~~~~i~~~~~~i~~y~~r 140 (1352)
|+||++.+.. .....+|||||+|+++.+|||+....+..+...|..|..+
T Consensus 4 v~~Il~~r~~----~~~~~~ylVkW~g~~~~~~tW~~~~~l~~~~~~v~~~~~~ 53 (55)
T smart00298 4 VEKILDHRWK----KKGELEYLVKWKGYSYSEDTWEPEENLLNCSKKLDNYKKK 53 (55)
T ss_pred hheeeeeeec----CCCcEEEEEEECCCCCccCceeeHHHHHHHHHHHHHHHHh
Confidence 8999999842 2335799999999999999999987775467778777764
No 172
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.84 E-value=0.00018 Score=83.61 Aligned_cols=74 Identities=18% Similarity=0.154 Sum_probs=53.7
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHH-HHHHHhcCC--CCcEEEEEChhh-HHHHHHHHHHH
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSML-GFLQNAQQI--PGPFLVVVPLST-LSNWAKEFRKW 248 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l-~~L~~~~~~--~gp~LIVvP~s~-L~nW~~Ef~kw 248 (1352)
.+.||.|++.++-+...+..+.++|+-..+|+|||+..+..+ .++...... ..++++++++.. +.+-..++++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 456999999999999999999999999999999999977544 555443221 136777777643 35545556554
No 173
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.84 E-value=0.00018 Score=83.61 Aligned_cols=74 Identities=18% Similarity=0.154 Sum_probs=53.7
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHH-HHHHHhcCC--CCcEEEEEChhh-HHHHHHHHHHH
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSML-GFLQNAQQI--PGPFLVVVPLST-LSNWAKEFRKW 248 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l-~~L~~~~~~--~gp~LIVvP~s~-L~nW~~Ef~kw 248 (1352)
.+.||.|++.++-+...+..+.++|+-..+|+|||+..+..+ .++...... ..++++++++.. +.+-..++++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 456999999999999999999999999999999999977544 555443221 136777777643 35545556554
No 174
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.82 E-value=0.0042 Score=80.68 Aligned_cols=88 Identities=16% Similarity=0.254 Sum_probs=57.7
Q ss_pred HHHHHhhhcCCeEEEEecchhHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHHHhcCC-CCCCcEEEeecCCCccCCC
Q 000684 500 KLLVRLHETKHRVLIFSQMVRMLDILAEYMSYK-GFQFQRLDGSTKAELRHQAMDHFNAP-GSEDFCFLLSTRAGGLGIN 577 (1352)
Q Consensus 500 kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~-g~~~~rldGs~~~~eR~~~Id~Fn~~-~s~~~vfLLSTrAgg~GIN 577 (1352)
+.|..+...+.++|||...-++++.+.+.|... ++. +...|. ..|.++++.|.+. ....-.+|+.|....+|||
T Consensus 525 ~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD 600 (697)
T PRK11747 525 EFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLD 600 (697)
T ss_pred HHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEecccccccc
Confidence 333333334445888888888888888888643 333 344564 2477788777631 0112247888888999999
Q ss_pred CCc--cCEEEEcCCCC
Q 000684 578 LAT--ADTVIIFDSDW 591 (1352)
Q Consensus 578 L~~--AdtVIi~DsdW 591 (1352)
++. +..|||.-.|+
T Consensus 601 ~pGd~l~~vII~kLPF 616 (697)
T PRK11747 601 LPGDYLTQVIITKIPF 616 (697)
T ss_pred CCCCceEEEEEEcCCC
Confidence 975 78898887665
No 175
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=97.78 E-value=1.8e-05 Score=67.90 Aligned_cols=48 Identities=38% Similarity=0.598 Sum_probs=37.6
Q ss_pred CCCCCCC-CCCCcceEEEEecCCccccccccchhhhhcccchHHHHHHHhh
Q 000684 2 SHLFDSE-PDWNEMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYAKK 51 (1352)
Q Consensus 2 ~~~~d~~-~~~~~~eyLVKWkg~SylH~tW~s~~~L~~~~g~kk~~n~~kk 51 (1352)
+.|.+.+ ...+..+|||||+|+++.||||++.+.|.. ....+.+|.++
T Consensus 5 ~~Il~~r~~~~~~~~ylVkW~g~~~~~~tW~~~~~l~~--~~~~v~~~~~~ 53 (55)
T smart00298 5 EKILDHRWKKKGELEYLVKWKGYSYSEDTWEPEENLLN--CSKKLDNYKKK 53 (55)
T ss_pred heeeeeeecCCCcEEEEEEECCCCCccCceeeHHHHHH--HHHHHHHHHHh
Confidence 4566666 566789999999999999999999999964 44566666553
No 176
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.74 E-value=0.005 Score=78.90 Aligned_cols=114 Identities=18% Similarity=0.200 Sum_probs=89.8
Q ss_pred hcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecC
Q 000684 491 SSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTR 570 (1352)
Q Consensus 491 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTr 570 (1352)
...|..++.+-+...+..|..|||-+.....-+.|...|...|++...|+..-. .|..-|=.+. + ..-.+-++|.
T Consensus 411 ~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~A-G--~~gaVTiATN 485 (822)
T COG0653 411 EEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQA-G--QPGAVTIATN 485 (822)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhc-C--CCCccccccc
Confidence 456888888999999999999999999999999999999999999999987655 3444443332 1 2225789999
Q ss_pred CCccCCCCCc-cC----------EEEEcCCCCChhhHHHHhhhhcccCCC
Q 000684 571 AGGLGINLAT-AD----------TVIIFDSDWNPQNDLQAMSRAHRIGQQ 609 (1352)
Q Consensus 571 Agg~GINL~~-Ad----------tVIi~DsdWNP~~dlQAigRahRiGQk 609 (1352)
.+|+|-++.- .+ .||=-.-.-+-..|.|--||++|.|-.
T Consensus 486 MAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDp 535 (822)
T COG0653 486 MAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDP 535 (822)
T ss_pred cccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCc
Confidence 9999999863 33 456566666777888999999999944
No 177
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=0.0002 Score=88.43 Aligned_cols=77 Identities=23% Similarity=0.349 Sum_probs=54.0
Q ss_pred EeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEEE--------EcCC---------CCC-hhhHHHHh
Q 000684 539 LDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVI--------IFDS---------DWN-PQNDLQAM 600 (1352)
Q Consensus 539 ldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVI--------i~Ds---------dWN-P~~dlQAi 600 (1352)
|..-.+.++. +.-|.....+...++++|.++...|.++..-+|| +||+ +|- -..--||.
T Consensus 610 LYSLLs~~~Q---~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRA 686 (1172)
T KOG0926|consen 610 LYSLLSTEKQ---MRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRA 686 (1172)
T ss_pred hhhhcCHHHh---hhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhc
Confidence 3343444433 3446666667778899999999999999999887 3444 553 33445888
Q ss_pred hhhcccCCCceEEEEEEecCC
Q 000684 601 SRAHRIGQQEVVNIYRFVTSK 621 (1352)
Q Consensus 601 gRahRiGQkk~V~VyrLvt~~ 621 (1352)
|||+|+|- -+.|||++..
T Consensus 687 GRAGRtgp---GHcYRLYSSA 704 (1172)
T KOG0926|consen 687 GRAGRTGP---GHCYRLYSSA 704 (1172)
T ss_pred cccCCCCC---CceeehhhhH
Confidence 88888884 5669998754
No 178
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.68 E-value=9.1e-05 Score=84.34 Aligned_cols=90 Identities=18% Similarity=0.248 Sum_probs=68.8
Q ss_pred HHHHHhcCCCCCCcEEEeecCCCccCCCCCcc----C----EEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCC
Q 000684 550 QAMDHFNAPGSEDFCFLLSTRAGGLGINLATA----D----TVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSK 621 (1352)
Q Consensus 550 ~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~A----d----tVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~ 621 (1352)
...+.|+++. + .++|-++||+.||.|++- | +-|+++++|+....+|.+||+||-||..+..+..+++.-
T Consensus 52 ~e~~~F~~g~--k-~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~ 128 (278)
T PF13871_consen 52 AEKQAFMDGE--K-DVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDL 128 (278)
T ss_pred HHHHHHhCCC--c-eEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCC
Confidence 4567999843 2 355557999999999952 1 347899999999999999999999999876544556666
Q ss_pred CHHHHHHHHHHHHHhhHHHHH
Q 000684 622 SVEEDILERAKKKMVLDHLVI 642 (1352)
Q Consensus 622 TiEE~Il~ra~~K~~L~~~vi 642 (1352)
..|.+......+|+.--.+..
T Consensus 129 ~gE~Rfas~va~rL~sLgAlt 149 (278)
T PF13871_consen 129 PGERRFASTVARRLESLGALT 149 (278)
T ss_pred HHHHHHHHHHHHHHhhccccc
Confidence 678888888888876544443
No 179
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.62 E-value=0.0003 Score=77.85 Aligned_cols=68 Identities=24% Similarity=0.344 Sum_probs=48.0
Q ss_pred CCcHHHHHHHHHHHHHhcCCCc-EEEEcCCCCcHHHHHHHHHHHHHH-----hcCCCCcEEEEECh-hhHHHHHHHHHH
Q 000684 176 KLRDYQLEGLNFLVNSWRNDTN-VILADEMGLGKTVQSVSMLGFLQN-----AQQIPGPFLVVVPL-STLSNWAKEFRK 247 (1352)
Q Consensus 176 ~Lr~yQlegvnwL~~~~~~~~~-~ILADEmGLGKTlqaIa~l~~L~~-----~~~~~gp~LIVvP~-s~L~nW~~Ef~k 247 (1352)
+|-+.|.+++.-++ .... +++....|+|||....+++..+.. .....+++||++|. ..+.+-...+.+
T Consensus 1 ~ln~~Q~~Ai~~~~----~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSAL----SSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHC----TSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHH----cCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 47789999998776 4455 889999999999887777777732 24556789999997 456777777766
No 180
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.61 E-value=0.00026 Score=84.93 Aligned_cols=113 Identities=25% Similarity=0.304 Sum_probs=86.1
Q ss_pred chhHHHHHHHHHhh--hcCCeEEEEecchhHHHHHHHHHHhcCCc-EEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeec
Q 000684 493 GKLVILDKLLVRLH--ETKHRVLIFSQMVRMLDILAEYMSYKGFQ-FQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLST 569 (1352)
Q Consensus 493 gKl~~L~kLL~~l~--~~g~KVLIFSq~~~~ldiL~d~L~~~g~~-~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLST 569 (1352)
+.+.+++.++..+. ..|+-|+-||.- -+=-+...+..+|.. ++.|.|+.+++-|.+--..||++.++ +-+|++|
T Consensus 340 ~pL~v~~~~~~sl~nlk~GDCvV~FSkk--~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e-~dvlVAs 416 (700)
T KOG0953|consen 340 SPLVVEETALGSLSNLKPGDCVVAFSKK--DIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNE-CDVLVAS 416 (700)
T ss_pred CcceehhhhhhhhccCCCCCeEEEeehh--hHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCc-cceEEee
Confidence 34445555555554 578999999963 222344555556655 99999999999999999999997655 4589999
Q ss_pred CCCccCCCCCccCEEEEcCCC---------CChhhHHHHhhhhcccCCC
Q 000684 570 RAGGLGINLATADTVIIFDSD---------WNPQNDLQAMSRAHRIGQQ 609 (1352)
Q Consensus 570 rAgg~GINL~~AdtVIi~Dsd---------WNP~~dlQAigRahRiGQk 609 (1352)
+|.|.|+||. .++|||++.- -.-....|.-|||+|.|.+
T Consensus 417 DAIGMGLNL~-IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~ 464 (700)
T KOG0953|consen 417 DAIGMGLNLN-IRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSK 464 (700)
T ss_pred cccccccccc-eeEEEEeecccCCcccceeccHHHHHHHhhcccccccC
Confidence 9999999996 7899998864 3445567999999999876
No 181
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=97.56 E-value=0.013 Score=76.77 Aligned_cols=47 Identities=19% Similarity=0.184 Sum_probs=35.8
Q ss_pred CCcEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCc
Q 000684 561 EDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQE 610 (1352)
Q Consensus 561 ~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk 610 (1352)
...+++|+|.+...|+|+- .|.+|.-=+ .-...+|++||+.|-|+..
T Consensus 837 ~~~~i~v~Tqv~E~g~D~d-fd~~~~~~~--~~~sliQ~aGR~~R~~~~~ 883 (1110)
T TIGR02562 837 NHLFIVLATPVEEVGRDHD-YDWAIADPS--SMRSIIQLAGRVNRHRLEK 883 (1110)
T ss_pred CCCeEEEEeeeEEEEeccc-CCeeeeccC--cHHHHHHHhhcccccccCC
Confidence 3557899999999999975 566655322 2456789999999999863
No 182
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.54 E-value=0.0025 Score=77.96 Aligned_cols=83 Identities=22% Similarity=0.288 Sum_probs=56.6
Q ss_pred CcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCccCEEEEcCCCC------Ch--------------
Q 000684 534 FQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDW------NP-------------- 593 (1352)
Q Consensus 534 ~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdW------NP-------------- 593 (1352)
+-.+-|..+.+.+...++ |.....+..-++|+|..+...|.+.....|| ||.+ ||
T Consensus 507 liv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTIdgI~yVi--DpGf~K~nsynprtGmesL~v~piSK 581 (902)
T KOG0923|consen 507 LIVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTIDGIKYVI--DPGFVKQNSYNPRTGMESLLVTPISK 581 (902)
T ss_pred EEEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceeecCeEEEe--cCccccccCcCCCcCceeEEEeeech
Confidence 446677888888776555 4443344556889999999999888776665 5543 33
Q ss_pred hhHHHHhhhhcccCCCceEEEEEEecCCCHH
Q 000684 594 QNDLQAMSRAHRIGQQEVVNIYRFVTSKSVE 624 (1352)
Q Consensus 594 ~~dlQAigRahRiGQkk~V~VyrLvt~~TiE 624 (1352)
.+-.||.|||+|.|- -..|||.|.-+++
T Consensus 582 AsA~QRaGRAGRtgP---GKCfRLYt~~aY~ 609 (902)
T KOG0923|consen 582 ASANQRAGRAGRTGP---GKCFRLYTAWAYE 609 (902)
T ss_pred hhhhhhccccCCCCC---CceEEeechhhhh
Confidence 234677777777764 4558999977665
No 183
>KOG2748 consensus Uncharacterized conserved protein, contains chromo domain [Chromatin structure and dynamics]
Probab=97.53 E-value=2.4e-05 Score=88.54 Aligned_cols=43 Identities=19% Similarity=0.420 Sum_probs=34.5
Q ss_pred CCCCCcceEEEEecCCccccccccchhhhhcccchHHHHHHHhhhh
Q 000684 8 EPDWNEMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYAKKVV 53 (1352)
Q Consensus 8 ~~~~~~~eyLVKWkg~SylH~tW~s~~~L~~~~g~kk~~n~~kk~~ 53 (1352)
+.-.+.+||||||+|||+-||||||+++|.. -+.++.|.++..
T Consensus 20 RirKGrvEYlVKWkGWs~kyNTWEPEENILD---pRLi~AFe~rEr 62 (369)
T KOG2748|consen 20 RIRKGRVEYLVKWKGWSQKYNTWEPEENILD---PRLIAAFEQRER 62 (369)
T ss_pred HhhccceEEEEEecccccccCccCccccccC---HHHHHHHHhhhH
Confidence 4456789999999999999999999999954 355667777643
No 184
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.49 E-value=0.0025 Score=75.49 Aligned_cols=63 Identities=22% Similarity=0.336 Sum_probs=48.1
Q ss_pred cEEEeecCCCccCCCCCccCEEEEcCCC------CC-----------hhhHHHHhhhhcccCCCceEEEEEEecCCCHHH
Q 000684 563 FCFLLSTRAGGLGINLATADTVIIFDSD------WN-----------PQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEE 625 (1352)
Q Consensus 563 ~vfLLSTrAgg~GINL~~AdtVIi~Dsd------WN-----------P~~dlQAigRahRiGQkk~V~VyrLvt~~TiEE 625 (1352)
..+++||..+...+.+.+.-.| .||. +| |..-.||+.|++|.|.+++-..|||.|+...+-
T Consensus 314 RkvVvstniaetsltidgiv~V--IDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~ 391 (699)
T KOG0925|consen 314 RKVVVSTNIAETSLTIDGIVFV--IDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEK 391 (699)
T ss_pred ceEEEEecchheeeeeccEEEE--ecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhh
Confidence 4588999999888877665444 4654 34 445579999999999999999999999876654
Q ss_pred HH
Q 000684 626 DI 627 (1352)
Q Consensus 626 ~I 627 (1352)
.+
T Consensus 392 em 393 (699)
T KOG0925|consen 392 EM 393 (699)
T ss_pred cC
Confidence 43
No 185
>PRK14873 primosome assembly protein PriA; Provisional
Probab=97.43 E-value=0.0033 Score=80.56 Aligned_cols=126 Identities=13% Similarity=0.014 Sum_probs=86.2
Q ss_pred CCCcHHHHHHHHHHHHHHhcCCCCcEEEEECh-hhHHHHHHHHHHHcCCCeEEEEEcCchhHHHHHHHhhhccccCCCCc
Q 000684 204 MGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPL-STLSNWAKEFRKWLPTMNVIVYVGTRASREVCQQYEFYNDKKVGRPI 282 (1352)
Q Consensus 204 mGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~-s~L~nW~~Ef~kw~p~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~ 282 (1352)
.|.|||-.-+.++......+ +.+||++|. ++..|+..-|...+++..+++||+.-...+..+.+.-. ...
T Consensus 169 ~GSGKTevyl~~i~~~l~~G---k~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~------~~G 239 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAG---RGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAV------LRG 239 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcC---CeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHH------hCC
Confidence 49999999888888777653 458999997 66799999999999877899999987777655544321 234
Q ss_pred cccEEEecHHHHHhhHhhhhccCcceEecchhccc--CCcchHHHH-----HHHcc-cccCeEEEeccC
Q 000684 283 KFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRL--KNSEAQLYT-----TLSEF-STKNKLLITGTP 343 (1352)
Q Consensus 283 kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrl--KN~~Skl~~-----aL~~l-~~~~rlLLTGTP 343 (1352)
...|||-|...+. +---+..+|||||=|-- |...+..|. .++.- ..-..+|-|+||
T Consensus 240 ~~~IViGtRSAvF-----aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTP 303 (665)
T PRK14873 240 QARVVVGTRSAVF-----APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHAR 303 (665)
T ss_pred CCcEEEEcceeEE-----eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCC
Confidence 6789999977542 22225689999998864 433222211 12222 233346669999
No 186
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.13 E-value=0.0099 Score=67.99 Aligned_cols=123 Identities=21% Similarity=0.194 Sum_probs=76.0
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhH----HHHHHHHHHHc
Q 000684 174 GGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTL----SNWAKEFRKWL 249 (1352)
Q Consensus 174 ~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L----~nW~~Ef~kw~ 249 (1352)
|..+++-|+-|+--|. .|-|.-..||=|||+++. +++++.... ..++=||+.+..| .+|...|-.++
T Consensus 75 g~~p~~vQll~~l~L~------~G~laEm~TGEGKTli~~-l~a~~~AL~--G~~V~vvT~NdyLA~RD~~~~~~~y~~L 145 (266)
T PF07517_consen 75 GLRPYDVQLLGALALH------KGRLAEMKTGEGKTLIAA-LPAALNALQ--GKGVHVVTSNDYLAKRDAEEMRPFYEFL 145 (266)
T ss_dssp S----HHHHHHHHHHH------TTSEEEESTTSHHHHHHH-HHHHHHHTT--SS-EEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCcccHHHHhhhhhcc------cceeEEecCCCCcHHHHH-HHHHHHHHh--cCCcEEEeccHHHhhccHHHHHHHHHHh
Confidence 5678888888885552 455999999999999874 333444332 2467778888777 56888888887
Q ss_pred CCCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhH---------hhhhccCcceEecchhcccC
Q 000684 250 PTMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDK---------AVLSKIKWNYLMVDEAHRLK 318 (1352)
Q Consensus 250 p~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~---------~~L~~i~w~~lIVDEAHrlK 318 (1352)
++.+.+..++.........| ..+|+-+|-..+.-|. .....-.++++||||+..+.
T Consensus 146 -Glsv~~~~~~~~~~~r~~~Y------------~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 146 -GLSVGIITSDMSSEERREAY------------AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp -T--EEEEETTTEHHHHHHHH------------HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred -hhccccCccccCHHHHHHHH------------hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 67777766655433222222 4678888877665431 11112478999999998763
No 187
>PF08074 CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR012957 The CHDCT2 C-terminal domain is found in PHD/RING fingers and chromo domain-associated CHD-like helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=97.08 E-value=0.00025 Score=72.70 Aligned_cols=63 Identities=35% Similarity=0.569 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHHhhccCcchHHhHhhhhcccccccCCcccccccCCCC-ChhhHHHHHHHHHH
Q 000684 937 CGWNQFDDARLLLGIHYHGFGNWENIRLDERLGLTKKIAPVELQHHETFLP-RAPNLKERANALLE 1001 (1352)
Q Consensus 937 ~~W~~eeD~~LL~gI~kyGyG~We~Ir~D~~L~l~~ki~~~~~~~~~~~~p-~a~hL~rR~d~LL~ 1001 (1352)
..|..++|..||.||.+||||.|..|.+||++.+...=|-.+..+ ..|+. ...=|+||. .||+
T Consensus 4 ~iw~r~hdywll~gi~~hgy~rwqdi~nd~~f~IiNEPFk~e~~k-gnfle~KNkFLaRRf-KLLE 67 (173)
T PF08074_consen 4 EIWHRRHDYWLLAGIVKHGYGRWQDIQNDPRFAIINEPFKTESQK-GNFLEMKNKFLARRF-KLLE 67 (173)
T ss_pred hhhhhhhhHHHHhHHhhccchhHHHHhcCCceeeecccccccccc-cchHHHHHHHHHHHH-HHHH
Confidence 469999999999999999999999999999987544333222211 11111 122388887 5554
No 188
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=96.77 E-value=0.0058 Score=77.12 Aligned_cols=137 Identities=18% Similarity=0.239 Sum_probs=87.1
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhH--HH------HHHHH-HHHcCCCeEEEEEcCchhH
Q 000684 194 NDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTL--SN------WAKEF-RKWLPTMNVIVYVGTRASR 264 (1352)
Q Consensus 194 ~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L--~n------W~~Ef-~kw~p~l~vvvy~G~~~~r 264 (1352)
...|+=+-+|||+|||.+-+-.+..|....+.. .|+||||.-.+ .+ -.+.| ...+.+.+.-.|.-+....
T Consensus 73 ~~lNiDI~METGTGKTy~YlrtmfeLhk~YG~~-KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~~ 151 (985)
T COG3587 73 DKLNIDILMETGTGKTYTYLRTMFELHKKYGLF-KFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDIE 151 (985)
T ss_pred CcceeeEEEecCCCceeeHHHHHHHHHHHhCce-eEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHHH
Confidence 445677889999999999888888888776654 49999997443 11 22233 3333333332232221111
Q ss_pred HHHHHHhhhccccCCCCccccEEEecHHHHHhh---Hhhh---------------------hccCcceEecchhcccCCc
Q 000684 265 EVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKD---KAVL---------------------SKIKWNYLMVDEAHRLKNS 320 (1352)
Q Consensus 265 ~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d---~~~L---------------------~~i~w~~lIVDEAHrlKN~ 320 (1352)
... ........|++.+...+.++ ...+ ... =-+|||||.|++...
T Consensus 152 ----~~~------~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~-rPIvIvDEPh~f~~~ 220 (985)
T COG3587 152 ----KFK------FKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASM-RPIVIVDEPHRFLGD 220 (985)
T ss_pred ----HHh------hccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhc-CCEEEecChhhcccc
Confidence 111 12334677888888777665 2111 111 137999999999876
Q ss_pred chHHHHHHHcccccCeEEEeccC
Q 000684 321 EAQLYTTLSEFSTKNKLLITGTP 343 (1352)
Q Consensus 321 ~Skl~~aL~~l~~~~rlLLTGTP 343 (1352)
.+.+.++..+...+.|=..||-
T Consensus 221 -~k~~~~i~~l~pl~ilRfgATf 242 (985)
T COG3587 221 -DKTYGAIKQLNPLLILRFGATF 242 (985)
T ss_pred -hHHHHHHHhhCceEEEEecccc
Confidence 7899999999988888788883
No 189
>PRK10536 hypothetical protein; Provisional
Probab=96.67 E-value=0.0057 Score=69.21 Aligned_cols=148 Identities=17% Similarity=0.173 Sum_probs=83.1
Q ss_pred CCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHHHHHcCCCeEE
Q 000684 176 KLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRKWLPTMNVI 255 (1352)
Q Consensus 176 ~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef~kw~p~l~vv 255 (1352)
.....|...+.++. ++..+++.-+.|+|||..++++......... ...++|+=|.-.. .|.--++|+
T Consensus 59 p~n~~Q~~~l~al~----~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~-~~kIiI~RP~v~~----ge~LGfLPG---- 125 (262)
T PRK10536 59 ARNEAQAHYLKAIE----SKQLIFATGEAGCGKTWISAAKAAEALIHKD-VDRIIVTRPVLQA----DEDLGFLPG---- 125 (262)
T ss_pred CCCHHHHHHHHHHh----cCCeEEEECCCCCCHHHHHHHHHHHHHhcCC-eeEEEEeCCCCCc----hhhhCcCCC----
Confidence 45668888888775 4568899999999999999998875442222 3334444333222 233344442
Q ss_pred EEEcCchhH------HHHHHHhhhccc-cCC---CCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCCcchHHH
Q 000684 256 VYVGTRASR------EVCQQYEFYNDK-KVG---RPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLY 325 (1352)
Q Consensus 256 vy~G~~~~r------~~i~~~e~~~~~-~~~---~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN~~Skl~ 325 (1352)
+..+. ......+.+... ... ....-.|.|.+...+ +.. .+.-++||||||+++.- ..+.
T Consensus 126 ----~~~eK~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ym-RGr----tl~~~~vIvDEaqn~~~--~~~k 194 (262)
T PRK10536 126 ----DIAEKFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYM-RGR----TFENAVVILDEAQNVTA--AQMK 194 (262)
T ss_pred ----CHHHHHHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHh-cCC----cccCCEEEEechhcCCH--HHHH
Confidence 21111 011111100000 000 000122444443332 221 12448999999999943 5666
Q ss_pred HHHHcccccCeEEEeccCCCCC
Q 000684 326 TTLSEFSTKNKLLITGTPLQNS 347 (1352)
Q Consensus 326 ~aL~~l~~~~rlLLTGTPlqNn 347 (1352)
..|..+....+++++|-|-|..
T Consensus 195 ~~ltR~g~~sk~v~~GD~~QiD 216 (262)
T PRK10536 195 MFLTRLGENVTVIVNGDITQCD 216 (262)
T ss_pred HHHhhcCCCCEEEEeCChhhcc
Confidence 7778888999999999997754
No 190
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.47 E-value=0.013 Score=64.42 Aligned_cols=146 Identities=22% Similarity=0.285 Sum_probs=69.1
Q ss_pred CcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHHHHHcCCCeEEE
Q 000684 177 LRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRKWLPTMNVIV 256 (1352)
Q Consensus 177 Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef~kw~p~l~vvv 256 (1352)
+...|...++-|. +..-+++.-..|+|||+.|++....+... +....++|+-|.... .+++- ++|
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~-g~~~kiii~Rp~v~~---~~~lG-flp------ 69 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKE-GEYDKIIITRPPVEA---GEDLG-FLP------ 69 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHT-TS-SEEEEEE-S--T---T-----SS-------
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCcEEEEEecCCCC---ccccc-cCC------
Confidence 4578999998887 45678899999999999999888777665 445567777776533 12221 122
Q ss_pred EEcCchh------HHHHHHHhhhccccC-CC-CccccEEEecHHHHHhhHhhhh--ccCcceEecchhcccCCcchHHHH
Q 000684 257 YVGTRAS------REVCQQYEFYNDKKV-GR-PIKFNTLLTTYEVVLKDKAVLS--KIKWNYLMVDEAHRLKNSEAQLYT 326 (1352)
Q Consensus 257 y~G~~~~------r~~i~~~e~~~~~~~-~~-~~kf~VlItTye~l~~d~~~L~--~i~w~~lIVDEAHrlKN~~Skl~~ 326 (1352)
|+..+ +......+.+..... .. .....|-+.+. .+++ .+...+||||||+++. ...+..
T Consensus 70 --G~~~eK~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~-------~~iRGrt~~~~~iIvDEaQN~t--~~~~k~ 138 (205)
T PF02562_consen 70 --GDLEEKMEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPL-------AFIRGRTFDNAFIIVDEAQNLT--PEELKM 138 (205)
T ss_dssp ----------TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEG-------GGGTT--B-SEEEEE-SGGG----HHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEeh-------hhhcCccccceEEEEecccCCC--HHHHHH
Confidence 22111 111111111100000 00 00112222222 2232 2356899999999983 445666
Q ss_pred HHHcccccCeEEEeccCCCCCH
Q 000684 327 TLSEFSTKNKLLITGTPLQNSV 348 (1352)
Q Consensus 327 aL~~l~~~~rlLLTGTPlqNnl 348 (1352)
.|.++....+++++|-|.|...
T Consensus 139 ilTR~g~~skii~~GD~~Q~D~ 160 (205)
T PF02562_consen 139 ILTRIGEGSKIIITGDPSQIDL 160 (205)
T ss_dssp HHTTB-TT-EEEEEE-------
T ss_pred HHcccCCCcEEEEecCceeecC
Confidence 7788888999999999987654
No 191
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.36 E-value=0.011 Score=71.18 Aligned_cols=133 Identities=19% Similarity=0.245 Sum_probs=98.4
Q ss_pred hcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHh----cCC----cEEEEeCCCCHHHHHHHHHHhcCCCCCC
Q 000684 491 SSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSY----KGF----QFQRLDGSTKAELRHQAMDHFNAPGSED 562 (1352)
Q Consensus 491 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~----~g~----~~~rldGs~~~~eR~~~Id~Fn~~~s~~ 562 (1352)
.+.|+.-..+|+..+...|-|+|-||...+..+++-...+. -|- .+..+.|+-..++|.++-.+.-. +.
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~---G~ 583 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFG---GK 583 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhC---Ce
Confidence 46677778888999999999999999998876655433221 110 12345678888888887655443 45
Q ss_pred cEEEeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCCCHHHHHH
Q 000684 563 FCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDIL 628 (1352)
Q Consensus 563 ~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~TiEE~Il 628 (1352)
.+-+|+|.|..+||++-..|.|+..-.+.+-.+..|..|||+|-... ...|| .+....|+...+
T Consensus 584 L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~-SLavy-va~~~PVDQ~Y~ 647 (1034)
T KOG4150|consen 584 LCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKP-SLAVY-VAFLGPVDQYYM 647 (1034)
T ss_pred eeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCC-ceEEE-EEeccchhhHhh
Confidence 67799999999999999999999999999999999999999997643 23333 344455665443
No 192
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.25 E-value=0.01 Score=59.92 Aligned_cols=116 Identities=22% Similarity=0.267 Sum_probs=60.6
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHHhc---CCCCcEEEEEChhh-HHHHHHHHHHHcC-CCeEEEEEcCchhHHHHH
Q 000684 194 NDTNVILADEMGLGKTVQSVSMLGFLQNAQ---QIPGPFLVVVPLST-LSNWAKEFRKWLP-TMNVIVYVGTRASREVCQ 268 (1352)
Q Consensus 194 ~~~~~ILADEmGLGKTlqaIa~l~~L~~~~---~~~gp~LIVvP~s~-L~nW~~Ef~kw~p-~l~vvvy~G~~~~r~~i~ 268 (1352)
.+..+++.-+.|.|||..+-.++..+.... ....-+.|-+|... ...+..++..-+. ....
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-------------- 68 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-------------- 68 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--------------
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--------------
Confidence 455678899999999999888887665421 11122344444443 3344444333220 0000
Q ss_pred HHhhhccccCCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCCcchHHHHHHHcc--cccCeEEEeccC
Q 000684 269 QYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEF--STKNKLLITGTP 343 (1352)
Q Consensus 269 ~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN~~Skl~~aL~~l--~~~~rlLLTGTP 343 (1352)
-.+..+....-...+....-.+|||||||++. .......|+.+ .....++|+|||
T Consensus 69 ------------------~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 69 ------------------RQTSDELRSLLIDALDRRRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp ------------------TS-HHHHHHHHHHHHHHCTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred ------------------cCCHHHHHHHHHHHHHhcCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 00111111112233333334789999999994 25555666555 556679999999
No 193
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.17 E-value=0.033 Score=61.08 Aligned_cols=130 Identities=23% Similarity=0.239 Sum_probs=68.9
Q ss_pred CCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHHHHHcCCCeEE
Q 000684 176 KLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRKWLPTMNVI 255 (1352)
Q Consensus 176 ~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef~kw~p~l~vv 255 (1352)
+|.+-|.+++..++.. ...-++|.-..|+|||.....+...+... ...+++++|+..... ++..-+ ...+.
T Consensus 1 ~L~~~Q~~a~~~~l~~--~~~~~~l~G~aGtGKT~~l~~~~~~~~~~---g~~v~~~apT~~Aa~---~L~~~~-~~~a~ 71 (196)
T PF13604_consen 1 TLNEEQREAVRAILTS--GDRVSVLQGPAGTGKTTLLKALAEALEAA---GKRVIGLAPTNKAAK---ELREKT-GIEAQ 71 (196)
T ss_dssp -S-HHHHHHHHHHHHC--TCSEEEEEESTTSTHHHHHHHHHHHHHHT---T--EEEEESSHHHHH---HHHHHH-TS-EE
T ss_pred CCCHHHHHHHHHHHhc--CCeEEEEEECCCCCHHHHHHHHHHHHHhC---CCeEEEECCcHHHHH---HHHHhh-Ccchh
Confidence 4778999999998742 23346777899999998766655555543 257899999875522 222221 11111
Q ss_pred EEEcCchhHHHHHHHhhhccccC-CCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCCcchHHHHHHHcccc-
Q 000684 256 VYVGTRASREVCQQYEFYNDKKV-GRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFST- 333 (1352)
Q Consensus 256 vy~G~~~~r~~i~~~e~~~~~~~-~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN~~Skl~~aL~~l~~- 333 (1352)
.++ .+...... ....... ....++||||||..+- ...+...+..+..
T Consensus 72 Ti~------------~~l~~~~~~~~~~~~~-----------------~~~~~vliVDEasmv~--~~~~~~ll~~~~~~ 120 (196)
T PF13604_consen 72 TIH------------SFLYRIPNGDDEGRPE-----------------LPKKDVLIVDEASMVD--SRQLARLLRLAKKS 120 (196)
T ss_dssp EHH------------HHTTEECCEECCSSCC------------------TSTSEEEESSGGG-B--HHHHHHHHHHS-T-
T ss_pred hHH------------HHHhcCCccccccccc-----------------CCcccEEEEecccccC--HHHHHHHHHHHHhc
Confidence 100 00000000 0000000 2345799999999983 3344455555544
Q ss_pred cCeEEEeccCCC
Q 000684 334 KNKLLITGTPLQ 345 (1352)
Q Consensus 334 ~~rlLLTGTPlq 345 (1352)
..++++.|-|-|
T Consensus 121 ~~klilvGD~~Q 132 (196)
T PF13604_consen 121 GAKLILVGDPNQ 132 (196)
T ss_dssp T-EEEEEE-TTS
T ss_pred CCEEEEECCcch
Confidence 679999999866
No 194
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=96.09 E-value=0.017 Score=71.05 Aligned_cols=77 Identities=23% Similarity=0.354 Sum_probs=62.5
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhh-HHHHHHHHHHHcCCCe
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLST-LSNWAKEFRKWLPTMN 253 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~-L~nW~~Ef~kw~p~l~ 253 (1352)
.+|-.-|..+|...+ +..=.||-...|+|||++..+++.+|... ..+|+||++|..+ ++|-..-|.+- +++
T Consensus 409 pkLN~SQ~~AV~~VL----~rplsLIQGPPGTGKTvtsa~IVyhl~~~--~~~~VLvcApSNiAVDqLaeKIh~t--gLK 480 (935)
T KOG1802|consen 409 PKLNASQSNAVKHVL----QRPLSLIQGPPGTGKTVTSATIVYHLARQ--HAGPVLVCAPSNIAVDQLAEKIHKT--GLK 480 (935)
T ss_pred hhhchHHHHHHHHHH----cCCceeeecCCCCCceehhHHHHHHHHHh--cCCceEEEcccchhHHHHHHHHHhc--Cce
Confidence 478999999999887 45667899999999999998888888765 5789999999876 58887777764 577
Q ss_pred EEEEEc
Q 000684 254 VIVYVG 259 (1352)
Q Consensus 254 vvvy~G 259 (1352)
|+-+..
T Consensus 481 VvRl~a 486 (935)
T KOG1802|consen 481 VVRLCA 486 (935)
T ss_pred Eeeeeh
Confidence 765443
No 195
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.09 E-value=0.012 Score=65.40 Aligned_cols=74 Identities=24% Similarity=0.263 Sum_probs=59.5
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHHHHHcC
Q 000684 174 GGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRKWLP 250 (1352)
Q Consensus 174 ~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef~kw~p 250 (1352)
+..+||-|.+.+..|+.. ..+.|.++-.-||-|||-..+-++..+...+ ..=+-+|||.+++.+-..-+..-+.
T Consensus 21 ~iliR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg--~~LvrviVpk~Ll~q~~~~L~~~lg 94 (229)
T PF12340_consen 21 NILIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVIVPMLALALADG--SRLVRVIVPKALLEQMRQMLRSRLG 94 (229)
T ss_pred CceeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchHHHHHHHHHcCC--CcEEEEEcCHHHHHHHHHHHHHHHH
Confidence 568999999999999864 5678999999999999999888887776432 2346789999999887777766554
No 196
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.87 E-value=0.029 Score=67.26 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=32.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHH-HHH
Q 000684 198 VILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAK-EFR 246 (1352)
Q Consensus 198 ~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~-Ef~ 246 (1352)
+|+--..|+|||+.++.++..+... ......+++|+...+.+... .+.
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~-~~~~~~~~l~~n~~l~~~l~~~l~ 52 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNS-EEGKKVLYLCGNHPLRNKLREQLA 52 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhcc-ccCCceEEEEecchHHHHHHHHHh
Confidence 4677789999999999999888222 22345678888766655433 443
No 197
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.80 E-value=0.068 Score=68.83 Aligned_cols=74 Identities=19% Similarity=0.262 Sum_probs=55.3
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhh-HHHHHHHHHHHcCCCe
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLST-LSNWAKEFRKWLPTMN 253 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~-L~nW~~Ef~kw~p~l~ 253 (1352)
..|-+.|.++|...+. .....++-...|+|||.++++++..+...+ .++||++|+.. +.+....+... +++
T Consensus 156 ~~ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g---~~VLv~a~sn~Avd~l~e~l~~~--~~~ 227 (637)
T TIGR00376 156 PNLNESQKEAVSFALS---SKDLFLIHGPPGTGKTRTLVELIRQLVKRG---LRVLVTAPSNIAVDNLLERLALC--DQK 227 (637)
T ss_pred CCCCHHHHHHHHHHhc---CCCeEEEEcCCCCCHHHHHHHHHHHHHHcC---CCEEEEcCcHHHHHHHHHHHHhC--CCc
Confidence 5789999999988762 346788899999999999888887776542 37999999865 57776666653 344
Q ss_pred EEE
Q 000684 254 VIV 256 (1352)
Q Consensus 254 vvv 256 (1352)
++-
T Consensus 228 vvR 230 (637)
T TIGR00376 228 IVR 230 (637)
T ss_pred EEE
Confidence 443
No 198
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.69 E-value=0.1 Score=52.48 Aligned_cols=43 Identities=26% Similarity=0.295 Sum_probs=28.7
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHH
Q 000684 195 DTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSN 240 (1352)
Q Consensus 195 ~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~n 240 (1352)
+..++|.-+.|.|||..+-.++..+.. ...+++++........
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~~~~~~~ 61 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFR---PGAPFLYLNASDLLEG 61 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhc---CCCCeEEEehhhhhhh
Confidence 667899999999999877666665542 2345555555444433
No 199
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=95.32 E-value=0.094 Score=64.72 Aligned_cols=64 Identities=25% Similarity=0.346 Sum_probs=50.5
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhh-HHHHHHH
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLST-LSNWAKE 244 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~-L~nW~~E 244 (1352)
..|-+-|..++.+++. +..-.|+--..|+|||.+.+-+|..+... ...+||.+|+.+ +.|-..-
T Consensus 184 ~~ln~SQk~Av~~~~~---~k~l~~I~GPPGTGKT~TlvEiI~qlvk~---~k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAIN---NKDLLIIHGPPGTGKTRTLVEIISQLVKQ---KKRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred ccccHHHHHHHHHHhc---cCCceEeeCCCCCCceeeHHHHHHHHHHc---CCeEEEEcCchHHHHHHHHH
Confidence 4788999999999884 33556788899999999988888777654 367999999864 6777664
No 200
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=95.27 E-value=0.011 Score=78.76 Aligned_cols=180 Identities=28% Similarity=0.379 Sum_probs=99.1
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCc--HHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHHHHHcCC-
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLG--KTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRKWLPT- 251 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLG--KTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef~kw~p~- 251 (1352)
..+.++|.....-...... ....++++.|+| ||+.+..+....... ......++++|.....+|..+...++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 159 (866)
T COG0553 83 FILIPHQLDIALEVLNELA--LRVLIADEVGLGDLKTIEAGAILKELLLR-GEIKRVLILVPKTLRAQWVVELLEKFNIR 159 (866)
T ss_pred cccCcchhhhhhhhhhhhh--hchhhcccccccccccccccccchHhhhh-hhhccceeccchHHHHHHHHHhhhhcccc
Confidence 3566666665543332211 227899999999 899877666555443 2345679999988889999988776311
Q ss_pred CeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhh----HhhhhccCc---ceEecchhcccCCcc---
Q 000684 252 MNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKD----KAVLSKIKW---NYLMVDEAHRLKNSE--- 321 (1352)
Q Consensus 252 l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d----~~~L~~i~w---~~lIVDEAHrlKN~~--- 321 (1352)
..++...+.......... +. .......++......... ...+....| +++++||+|.+.+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (866)
T COG0553 160 LAVLDKEGLRYLLKQYDA---YN-----PFSTEDLVLISLDLAKRSDSKRREALLEAEWGERDLLVIDEAHNLGSSEGTR 231 (866)
T ss_pred chhhhhhhhhhhhhhhcc---cc-----cccchhhhhhhhhhhhhhhhhhhhhhhcccccchhhhhcchHhhcccccccc
Confidence 111111111100000000 00 000001033333333222 223344456 899999999997742
Q ss_pred ------hHHHHHHHccccc--------CeEEEeccCCCCCHHHHHHHHhhcCCCCCCC
Q 000684 322 ------AQLYTTLSEFSTK--------NKLLITGTPLQNSVEELWALLHFLDHDKFKS 365 (1352)
Q Consensus 322 ------Skl~~aL~~l~~~--------~rlLLTGTPlqNnl~EL~sLL~fL~p~~f~~ 365 (1352)
...+..+...... ...++++||.+....++++...++.+..+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (866)
T COG0553 232 KLAPLETLEYELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLAD 289 (866)
T ss_pred cccchhhhHHHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccccchhh
Confidence 3344444433211 2347899999988888877777777766655
No 201
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=95.24 E-value=0.034 Score=59.38 Aligned_cols=79 Identities=19% Similarity=0.240 Sum_probs=54.6
Q ss_pred hhcCCeEEEEecchhHHHHHHHHHHhcC----CcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecC--CCccCCCCC
Q 000684 506 HETKHRVLIFSQMVRMLDILAEYMSYKG----FQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTR--AGGLGINLA 579 (1352)
Q Consensus 506 ~~~g~KVLIFSq~~~~ldiL~d~L~~~g----~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTr--Agg~GINL~ 579 (1352)
...+.++|||...-.+++.+.+++...+ +... .. ....+..++++|.... -.+|+++. ...+|||+.
T Consensus 6 ~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~-~q---~~~~~~~~l~~~~~~~---~~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 6 SAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVF-VQ---GSKSRDELLEEFKRGE---GAILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp HCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEE-ES---TCCHHHHHHHHHCCSS---SEEEEEETTSCCGSSS--E
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceee-ec---CcchHHHHHHHHHhcc---CeEEEEEecccEEEeecCC
Confidence 3456789999999999999999997653 3222 22 2456888999999832 24777777 789999998
Q ss_pred c--cCEEEEcCCCC
Q 000684 580 T--ADTVIIFDSDW 591 (1352)
Q Consensus 580 ~--AdtVIi~DsdW 591 (1352)
. +..||+.-.|+
T Consensus 79 ~~~~r~vii~glPf 92 (167)
T PF13307_consen 79 GDLLRAVIIVGLPF 92 (167)
T ss_dssp CESEEEEEEES---
T ss_pred CchhheeeecCCCC
Confidence 5 88999988775
No 202
>KOG2748 consensus Uncharacterized conserved protein, contains chromo domain [Chromatin structure and dynamics]
Probab=95.23 E-value=0.0092 Score=68.24 Aligned_cols=54 Identities=43% Similarity=0.658 Sum_probs=43.4
Q ss_pred cccceeeeeccCCCCCCcceeEEEecCCCCcccccccccccchhHHHHHHHHHHHHHHHh
Q 000684 86 QVERIIADRISKDSSGNVTQEYLVKWKGLSYAEATWEKDEIIDFAQDAIDEYKAREAAMA 145 (1352)
Q Consensus 86 ~veRIi~~r~~~~~~~~~~~~YLVKW~gL~Y~~~TWE~~~~i~~~~~~i~~y~~r~~~~~ 145 (1352)
.+|-||.+|+.+ | ..||||||+|-.--..|||.++.|- ...+|..|.+++....
T Consensus 12 AaEsIlkkRirK---G--rvEYlVKWkGWs~kyNTWEPEENIL-DpRLi~AFe~rErek~ 65 (369)
T KOG2748|consen 12 AAESILKKRIRK---G--RVEYLVKWKGWSQKYNTWEPEENIL-DPRLIAAFEQREREKE 65 (369)
T ss_pred HHHHHHHHHhhc---c--ceEEEEEecccccccCccCcccccc-CHHHHHHHHhhhHHHh
Confidence 478888888643 2 5699999999998889999998874 3679999999876653
No 203
>KOG1911 consensus Heterochromatin-associated protein HP1 and related CHROMO domain proteins [Chromatin structure and dynamics]
Probab=95.21 E-value=0.012 Score=67.73 Aligned_cols=56 Identities=36% Similarity=0.620 Sum_probs=44.2
Q ss_pred cCcccceeeeeccCCCCCCcceeEEEecCCCCcccccccccccchhHHHHHHHHHHHHHHH
Q 000684 84 NSQVERIIADRISKDSSGNVTQEYLVKWKGLSYAEATWEKDEIIDFAQDAIDEYKAREAAM 144 (1352)
Q Consensus 84 ~~~veRIi~~r~~~~~~~~~~~~YLVKW~gL~Y~~~TWE~~~~i~~~~~~i~~y~~r~~~~ 144 (1352)
...||+|++++.. .| ..+|||||+|.+-.++|||...+...+.++|+.|.......
T Consensus 48 ~~vvEki~~~r~~---~g--~~eYlvkW~Gy~~~~ntWEPee~~~~C~~li~~~~~~~~~~ 103 (270)
T KOG1911|consen 48 EYVVEKILKRRKK---NG--KIEYLVKWKGYPDPDNTWEPEEHNLDCPELIDEFEKSQKKL 103 (270)
T ss_pred hhhhhhhhhcccc---CC--CceeeeecCCCCCccccCCchhhccccHHHHHHHHHHhccc
Confidence 3468999998853 22 26899999999999999999875545689999999875443
No 204
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.20 E-value=0.087 Score=67.32 Aligned_cols=82 Identities=20% Similarity=0.197 Sum_probs=59.5
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHH-HHHHHHHHhc-----------C------------------
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSV-SMLGFLQNAQ-----------Q------------------ 224 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaI-a~l~~L~~~~-----------~------------------ 224 (1352)
.++++-|+.-+..++.......+|+|-+.+|+|||+.-| +.|+|..+.. .
T Consensus 20 ~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e 99 (945)
T KOG1132|consen 20 FQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEE 99 (945)
T ss_pred CCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhh
Confidence 578999999999999999999999999999999999843 3344433221 0
Q ss_pred --------CCCcEEEEECh--hhHHHHHHHHHHHcCCCeEEE
Q 000684 225 --------IPGPFLVVVPL--STLSNWAKEFRKWLPTMNVIV 256 (1352)
Q Consensus 225 --------~~gp~LIVvP~--s~L~nW~~Ef~kw~p~l~vvv 256 (1352)
..-|.++.+-. +-|.|-.+|+.+..-.+..+|
T Consensus 100 ~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~vkmtV 141 (945)
T KOG1132|consen 100 AGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYRVKMTV 141 (945)
T ss_pred hcCccccccCCceEEEecchHHHHHHHHHHHhhcCCCCceEE
Confidence 01356777765 458999999988753344433
No 205
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.18 E-value=0.15 Score=66.60 Aligned_cols=134 Identities=17% Similarity=0.218 Sum_probs=82.5
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHHHHHcCCCe
Q 000684 174 GGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRKWLPTMN 253 (1352)
Q Consensus 174 ~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef~kw~p~l~ 253 (1352)
+..|.+-|.+++..+. .+.-+||.-..|+|||..+-+++..+.... ...++++++|+..-.....+. + +.
T Consensus 321 ~~~l~~~Q~~Ai~~~~----~~~~~iitGgpGTGKTt~l~~i~~~~~~~~-~~~~v~l~ApTg~AA~~L~e~---~-g~- 390 (720)
T TIGR01448 321 RKGLSEEQKQALDTAI----QHKVVILTGGPGTGKTTITRAIIELAEELG-GLLPVGLAAPTGRAAKRLGEV---T-GL- 390 (720)
T ss_pred CCCCCHHHHHHHHHHH----hCCeEEEECCCCCCHHHHHHHHHHHHHHcC-CCceEEEEeCchHHHHHHHHh---c-CC-
Confidence 4579999999998875 456789999999999988877777665432 124688889987665544332 1 10
Q ss_pred EEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCCcchHHHHHHHcccc
Q 000684 254 VIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFST 333 (1352)
Q Consensus 254 vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN~~Skl~~aL~~l~~ 333 (1352)
. ....-+-..+.. .. . .. . ..-.....++||||||+.+- ...+...+..+..
T Consensus 391 -------~-a~Tih~lL~~~~--------~~--~---~~---~--~~~~~~~~~llIvDEaSMvd--~~~~~~Ll~~~~~ 442 (720)
T TIGR01448 391 -------T-ASTIHRLLGYGP--------DT--F---RH---N--HLEDPIDCDLLIVDESSMMD--TWLALSLLAALPD 442 (720)
T ss_pred -------c-cccHHHHhhccC--------Cc--c---ch---h--hhhccccCCEEEEeccccCC--HHHHHHHHHhCCC
Confidence 0 011101010000 00 0 00 0 00012457899999999983 2344555666777
Q ss_pred cCeEEEeccCCC
Q 000684 334 KNKLLITGTPLQ 345 (1352)
Q Consensus 334 ~~rlLLTGTPlq 345 (1352)
..+++|.|-|-|
T Consensus 443 ~~rlilvGD~~Q 454 (720)
T TIGR01448 443 HARLLLVGDTDQ 454 (720)
T ss_pred CCEEEEECcccc
Confidence 889999998765
No 206
>KOG1911 consensus Heterochromatin-associated protein HP1 and related CHROMO domain proteins [Chromatin structure and dynamics]
Probab=95.10 E-value=0.016 Score=66.78 Aligned_cols=50 Identities=16% Similarity=0.383 Sum_probs=39.2
Q ss_pred CCCCCCCCCCCCcceEEEEecCCccccccccchhhhhcccchHHHHHHHhhh
Q 000684 1 MSHLFDSEPDWNEMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYAKKV 52 (1352)
Q Consensus 1 ~~~~~d~~~~~~~~eyLVKWkg~SylH~tW~s~~~L~~~~g~kk~~n~~kk~ 52 (1352)
|+++++.+...+..||||||+|+..-.|||+|++.+..+ ...+..|.++.
T Consensus 51 vEki~~~r~~~g~~eYlvkW~Gy~~~~ntWEPee~~~~C--~~li~~~~~~~ 100 (270)
T KOG1911|consen 51 VEKILKRRKKNGKIEYLVKWKGYPDPDNTWEPEEHNLDC--PELIDEFEKSQ 100 (270)
T ss_pred hhhhhhccccCCCceeeeecCCCCCccccCCchhhcccc--HHHHHHHHHHh
Confidence 467888888888899999999999999999999855443 34555665553
No 207
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.00 E-value=0.14 Score=65.26 Aligned_cols=139 Identities=17% Similarity=0.211 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCC--CCcEEEEEChhhHH-HHHHHHHHHcCCCeEE
Q 000684 179 DYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQI--PGPFLVVVPLSTLS-NWAKEFRKWLPTMNVI 255 (1352)
Q Consensus 179 ~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~--~gp~LIVvP~s~L~-nW~~Ef~kw~p~l~vv 255 (1352)
+.|..++...+ .+.-+||.-..|+|||.++..++..+...... ...+++++|+.--. ...+-+..-...+..
T Consensus 148 ~~Qk~A~~~al----~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~- 222 (586)
T TIGR01447 148 NWQKVAVALAL----KSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAA- 222 (586)
T ss_pred HHHHHHHHHHh----hCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhccccc-
Confidence 78999988776 45778999999999999988888877654322 13589999975432 222222221111110
Q ss_pred EEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhH--------hhhhccCcceEecchhcccCCcchHHHHH
Q 000684 256 VYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDK--------AVLSKIKWNYLMVDEAHRLKNSEAQLYTT 327 (1352)
Q Consensus 256 vy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~--------~~L~~i~w~~lIVDEAHrlKN~~Skl~~a 327 (1352)
.. .... ...+-..|...++... ..-....+++||||||-.+- ...+...
T Consensus 223 ----~~---~~~~--------------~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd--~~l~~~l 279 (586)
T TIGR01447 223 ----AE---ALIA--------------ALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD--LPLMAKL 279 (586)
T ss_pred ----ch---hhhh--------------ccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC--HHHHHHH
Confidence 00 0000 0000112222222110 00112468999999999883 3345566
Q ss_pred HHcccccCeEEEeccCCC
Q 000684 328 LSEFSTKNKLLITGTPLQ 345 (1352)
Q Consensus 328 L~~l~~~~rlLLTGTPlq 345 (1352)
+..+....||+|.|-|-|
T Consensus 280 l~al~~~~rlIlvGD~~Q 297 (586)
T TIGR01447 280 LKALPPNTKLILLGDKNQ 297 (586)
T ss_pred HHhcCCCCEEEEECChhh
Confidence 777788899999998765
No 208
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.83 E-value=0.21 Score=63.90 Aligned_cols=141 Identities=16% Similarity=0.194 Sum_probs=83.1
Q ss_pred CcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcC-CCCcEEEEEChhhHHHHHHH-HHHHcCCCeE
Q 000684 177 LRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQ-IPGPFLVVVPLSTLSNWAKE-FRKWLPTMNV 254 (1352)
Q Consensus 177 Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~-~~gp~LIVvP~s~L~nW~~E-f~kw~p~l~v 254 (1352)
.-+.|.+++.-.+ .+.-+||.-..|+|||.++..++..+..... ....+++++|+.--..=..| +..-...+..
T Consensus 153 ~~d~Qk~Av~~a~----~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 153 EVDWQKVAAAVAL----TRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CCHHHHHHHHHHh----cCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 4589999998766 4567899999999999998888887765322 22457888997654332222 2111111110
Q ss_pred EEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhH--------hhhhccCcceEecchhcccCCcchHHHH
Q 000684 255 IVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDK--------AVLSKIKWNYLMVDEAHRLKNSEAQLYT 326 (1352)
Q Consensus 255 vvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~--------~~L~~i~w~~lIVDEAHrlKN~~Skl~~ 326 (1352)
....+. .+..-.+|...++... ..-....+++||||||..+ .-...+.
T Consensus 229 -----~~~~~~-----------------~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv--d~~lm~~ 284 (615)
T PRK10875 229 -----TDEQKK-----------------RIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV--DLPMMAR 284 (615)
T ss_pred -----chhhhh-----------------cCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc--cHHHHHH
Confidence 000000 0001112222222110 0112246799999999988 3344566
Q ss_pred HHHcccccCeEEEeccCCC
Q 000684 327 TLSEFSTKNKLLITGTPLQ 345 (1352)
Q Consensus 327 aL~~l~~~~rlLLTGTPlq 345 (1352)
.+..+....||+|-|-|-|
T Consensus 285 ll~al~~~~rlIlvGD~~Q 303 (615)
T PRK10875 285 LIDALPPHARVIFLGDRDQ 303 (615)
T ss_pred HHHhcccCCEEEEecchhh
Confidence 6777888899999998765
No 209
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=94.39 E-value=0.082 Score=43.38 Aligned_cols=30 Identities=27% Similarity=0.459 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHHHhhccCcchHHhHhhh
Q 000684 937 CGWNQFDDARLLLGIHYHGFGNWENIRLDE 966 (1352)
Q Consensus 937 ~~W~~eeD~~LL~gI~kyGyG~We~Ir~D~ 966 (1352)
..|+++||..|+.++..||.+.|..|....
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~ 31 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKEL 31 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHc
Confidence 579999999999999999999999998764
No 210
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=94.15 E-value=0.046 Score=45.80 Aligned_cols=30 Identities=27% Similarity=0.530 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHHhhccCcchHHhHhhhh
Q 000684 938 GWNQFDDARLLLGIHYHGFGNWENIRLDER 967 (1352)
Q Consensus 938 ~W~~eeD~~LL~gI~kyGyG~We~Ir~D~~ 967 (1352)
.||++||..|+-+|.+||-++|..|..-..
T Consensus 3 ~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~ 32 (48)
T PF00249_consen 3 PWTEEEDEKLLEAVKKYGKDNWKKIAKRMP 32 (48)
T ss_dssp SS-HHHHHHHHHHHHHSTTTHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCcHHHHHHHHcC
Confidence 699999999999999999999999988643
No 211
>PRK04296 thymidine kinase; Provisional
Probab=94.10 E-value=0.14 Score=55.85 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=25.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEC
Q 000684 198 VILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVP 234 (1352)
Q Consensus 198 ~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP 234 (1352)
.++.-+||.|||..++.++..+... ...++|+.|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~---g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEER---GMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHc---CCeEEEEec
Confidence 4678899999999998888766543 245676655
No 212
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.03 E-value=0.19 Score=57.58 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=22.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHh
Q 000684 196 TNVILADEMGLGKTVQSVSMLGFLQNA 222 (1352)
Q Consensus 196 ~~~ILADEmGLGKTlqaIa~l~~L~~~ 222 (1352)
.+++|.-+.|+|||..|-++...+...
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~~ 69 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKEM 69 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 467999999999999988887766543
No 213
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=93.81 E-value=0.11 Score=41.98 Aligned_cols=29 Identities=31% Similarity=0.558 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHHHHhhccCcchHHhHhhh
Q 000684 938 GWNQFDDARLLLGIHYHGFGNWENIRLDE 966 (1352)
Q Consensus 938 ~W~~eeD~~LL~gI~kyGyG~We~Ir~D~ 966 (1352)
.||++||..|+.++.+||.++|..|....
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~ 29 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKEL 29 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHc
Confidence 49999999999999999999999998864
No 214
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=93.59 E-value=0.074 Score=69.79 Aligned_cols=111 Identities=21% Similarity=0.317 Sum_probs=76.8
Q ss_pred hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhH-----HHHHHHHHHHcCCCeEEEEEcCchhHHH
Q 000684 192 WRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTL-----SNWAKEFRKWLPTMNVIVYVGTRASREV 266 (1352)
Q Consensus 192 ~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L-----~nW~~Ef~kw~p~l~vvvy~G~~~~r~~ 266 (1352)
+..+.+++++...|+|||+.|= ++.+. ....+.+.-|+|...+ .-|..-|..- .++.++...|...-...
T Consensus 1156 y~~nd~v~vga~~gsgkt~~ae--~a~l~--~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~lk 1230 (1674)
T KOG0951|consen 1156 YNTNDNVLVGAPNGSGKTACAE--LALLR--PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLDLK 1230 (1674)
T ss_pred ecccceEEEecCCCCchhHHHH--HHhcC--CccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccchH
Confidence 4577899999999999998652 22222 4456778999998755 4588877776 56777777666543322
Q ss_pred HHHHhhhccccCCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCCcchH
Q 000684 267 CQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQ 323 (1352)
Q Consensus 267 i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN~~Sk 323 (1352)
. ..+-+|+|.|++..-.-. .. -..++.|+||.|-+......
T Consensus 1231 l-------------~~~~~vii~tpe~~d~lq-~i--Q~v~l~i~d~lh~igg~~g~ 1271 (1674)
T KOG0951|consen 1231 L-------------LQKGQVIISTPEQWDLLQ-SI--QQVDLFIVDELHLIGGVYGA 1271 (1674)
T ss_pred H-------------hhhcceEEechhHHHHHh-hh--hhcceEeeehhhhhcccCCc
Confidence 2 126789999999774432 12 24689999999999865443
No 215
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=93.04 E-value=0.12 Score=60.58 Aligned_cols=150 Identities=20% Similarity=0.254 Sum_probs=77.6
Q ss_pred CCCCCcH-HHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHHHHHcCC
Q 000684 173 RGGKLRD-YQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRKWLPT 251 (1352)
Q Consensus 173 ~~~~Lr~-yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef~kw~p~ 251 (1352)
-|...+. +|.-++.-|+. ..-.=+.|.-.-|+|||+-|+|.-.+--...+....++|-=|.--+. +++
T Consensus 224 wGi~prn~eQ~~ALdlLld--~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG---~dI------ 292 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLD--DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVG---EDI------ 292 (436)
T ss_pred hccCcccHHHHHHHHHhcC--CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcc---ccc------
Confidence 3444444 78888888763 12234678889999999988775443333334445545544443332 111
Q ss_pred CeEEEEEcCchhH------HHHHHHhhhccccCCC---------CccccEEEecHHHHHhhHhhhhccCcceEecchhcc
Q 000684 252 MNVIVYVGTRASR------EVCQQYEFYNDKKVGR---------PIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHR 316 (1352)
Q Consensus 252 l~vvvy~G~~~~r------~~i~~~e~~~~~~~~~---------~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHr 316 (1352)
-..-|+.+++ .+....|+........ .....|.-.||= +- +++.=.+||||||++
T Consensus 293 ---GfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~I---RG----RSl~~~FiIIDEaQN 362 (436)
T COG1875 293 ---GFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYI---RG----RSLPDSFIIIDEAQN 362 (436)
T ss_pred ---CcCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeee---cc----cccccceEEEehhhc
Confidence 1112222221 1222223222111000 001111111111 00 234557899999999
Q ss_pred cCCcchHHHHHHHcccccCeEEEeccCCC
Q 000684 317 LKNSEAQLYTTLSEFSTKNKLLITGTPLQ 345 (1352)
Q Consensus 317 lKN~~Skl~~aL~~l~~~~rlLLTGTPlq 345 (1352)
|- ...+-..+.+.-...++.|||-|.|
T Consensus 363 LT--pheikTiltR~G~GsKIVl~gd~aQ 389 (436)
T COG1875 363 LT--PHELKTILTRAGEGSKIVLTGDPAQ 389 (436)
T ss_pred cC--HHHHHHHHHhccCCCEEEEcCCHHH
Confidence 93 3445566677778889999999866
No 216
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.82 E-value=0.48 Score=58.53 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 198 VILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 198 ~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
.|+.-+.|.|||..|..++..+..
T Consensus 43 ~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCc
Confidence 599999999999999988877754
No 217
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=92.74 E-value=0.32 Score=48.17 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=29.9
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHH
Q 000684 195 DTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSN 240 (1352)
Q Consensus 195 ~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~n 240 (1352)
+...+|.-.+|+|||..+..++..+.... ..++++.+......
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~~~~~~~~~ 44 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEE 44 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC---CCEEEECCEEcccc
Confidence 45688999999999998887776554322 34667766654433
No 218
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=92.68 E-value=0.56 Score=60.46 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCCC---cEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 181 QLEGLNFLVNSWRNDT---NVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 181 QlegvnwL~~~~~~~~---~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
|...+..|...+..+. ..||.-.-|+|||..+..|...|..
T Consensus 21 Qe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 21 QEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3444444444444433 3488999999999999988887764
No 219
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=92.66 E-value=0.39 Score=57.55 Aligned_cols=41 Identities=17% Similarity=0.402 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhcCCC---cEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 181 QLEGLNFLVNSWRNDT---NVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 181 QlegvnwL~~~~~~~~---~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
|.+++..|...+..+. ..++.-+.|+|||..+..++..+..
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 5566778888777776 4788999999999999999988865
No 220
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=92.51 E-value=0.34 Score=56.42 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=28.8
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHhcCC-CCcEEEEEC
Q 000684 195 DTNVILADEMGLGKTVQSVSMLGFLQNAQQI-PGPFLVVVP 234 (1352)
Q Consensus 195 ~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~-~gp~LIVvP 234 (1352)
+.+++|.-+.|+|||..|.++...+...... .++++.|..
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~ 98 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR 98 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH
Confidence 3468899999999999998888777654332 346555553
No 221
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.43 E-value=3.2 Score=52.43 Aligned_cols=81 Identities=17% Similarity=0.240 Sum_probs=47.4
Q ss_pred eEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCH--HH---HHHHHHHhcCC-CCCCcEEEeecC--CCccCCCCCc--
Q 000684 511 RVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKA--EL---RHQAMDHFNAP-GSEDFCFLLSTR--AGGLGINLAT-- 580 (1352)
Q Consensus 511 KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~--~e---R~~~Id~Fn~~-~s~~~vfLLSTr--Agg~GINL~~-- 580 (1352)
-|++|-..-..|..+..++...|+- .||.|.-+. +. -..++++|... +.+.-++|++.= -.++|||..+
T Consensus 631 GvV~FfPSy~yL~~v~k~w~~~gil-~ri~~kK~vF~E~k~~~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~L 709 (821)
T KOG1133|consen 631 GVVCFFPSYAYLGQVRKRWEQNGIL-ARIVGKKKVFYEPKDTVEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSDDL 709 (821)
T ss_pred cEEEEeccHHHHHHHHHHHHhcchH-HHhhccchhhccCcccHHHHHHHHHHHhhcCCCeEEEEEecccccccccccccc
Confidence 3777777778888888888755542 233332110 00 24466777532 111124555543 3478999986
Q ss_pred cCEEEEcCCCCC
Q 000684 581 ADTVIIFDSDWN 592 (1352)
Q Consensus 581 AdtVIi~DsdWN 592 (1352)
+..||+.-.|+-
T Consensus 710 gRaVvvVGlPyP 721 (821)
T KOG1133|consen 710 GRAVVVVGLPYP 721 (821)
T ss_pred ccEEEEeecCCC
Confidence 788888877763
No 222
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.32 E-value=0.7 Score=58.83 Aligned_cols=42 Identities=19% Similarity=0.197 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 180 YQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 180 yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
+-+..+..++....-....||.-..|+|||..+..|...|..
T Consensus 23 ~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 23 HVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred HHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 333344434433222234588999999999999998888764
No 223
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=92.01 E-value=0.46 Score=61.53 Aligned_cols=154 Identities=18% Similarity=0.252 Sum_probs=89.4
Q ss_pred CCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEECh-hhHHHHHHHHHHHcCCCeE
Q 000684 176 KLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPL-STLSNWAKEFRKWLPTMNV 254 (1352)
Q Consensus 176 ~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~-s~L~nW~~Ef~kw~p~l~v 254 (1352)
.|-.-|.+|+-..+.. .....|+.+ .|+|||.+...++..|...+ +.+|+.+=+ +.+.|-.--+..+ ++.+
T Consensus 669 ~LN~dQr~A~~k~L~a--edy~LI~GM-PGTGKTTtI~~LIkiL~~~g---kkVLLtsyThsAVDNILiKL~~~--~i~~ 740 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAA--EDYALILGM-PGTGKTTTISLLIKILVALG---KKVLLTSYTHSAVDNILIKLKGF--GIYI 740 (1100)
T ss_pred hcCHHHHHHHHHHHhc--cchheeecC-CCCCchhhHHHHHHHHHHcC---CeEEEEehhhHHHHHHHHHHhcc--Ccce
Confidence 6888999998766532 334455555 69999998888888887653 457777765 6678876666554 2222
Q ss_pred EEEEcCch-hHHHHHHHhhhccccC-------CCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCCcchHHHH
Q 000684 255 IVYVGTRA-SREVCQQYEFYNDKKV-------GRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYT 326 (1352)
Q Consensus 255 vvy~G~~~-~r~~i~~~e~~~~~~~-------~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN~~Skl~~ 326 (1352)
+-.|... ....++++........ .......||.+|---+ ....|..-.|||+|||||-.+--+ -
T Consensus 741 -lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi--~~plf~~R~FD~cIiDEASQI~lP-----~ 812 (1100)
T KOG1805|consen 741 -LRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGI--NHPLFVNRQFDYCIIDEASQILLP-----L 812 (1100)
T ss_pred -eecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCC--CchhhhccccCEEEEccccccccc-----h
Confidence 2224332 2233333321110000 0011334555553222 134455567999999999887433 2
Q ss_pred HHHcccccCeEEEeccCCC
Q 000684 327 TLSEFSTKNKLLITGTPLQ 345 (1352)
Q Consensus 327 aL~~l~~~~rlLLTGTPlq 345 (1352)
.|--+....+..|-|-+.|
T Consensus 813 ~LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 813 CLGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred hhhhhhhcceEEEeccccc
Confidence 3444566778888887755
No 224
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.94 E-value=0.69 Score=60.74 Aligned_cols=42 Identities=21% Similarity=0.217 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCCC--cE-EEEcCCCCcHHHHHHHHHHHHHHh
Q 000684 181 QLEGLNFLVNSWRNDT--NV-ILADEMGLGKTVQSVSMLGFLQNA 222 (1352)
Q Consensus 181 QlegvnwL~~~~~~~~--~~-ILADEmGLGKTlqaIa~l~~L~~~ 222 (1352)
|...+..|...+..++ +. |+.-+.|+|||..+-.|+..|...
T Consensus 21 Qe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 21 QSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 3334444444444432 44 799999999999999998877643
No 225
>CHL00181 cbbX CbbX; Provisional
Probab=91.88 E-value=0.48 Score=55.24 Aligned_cols=42 Identities=24% Similarity=0.293 Sum_probs=28.7
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHhcCC-CCcEEEEEChh
Q 000684 195 DTNVILADEMGLGKTVQSVSMLGFLQNAQQI-PGPFLVVVPLS 236 (1352)
Q Consensus 195 ~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~-~gp~LIVvP~s 236 (1352)
+.+.+|.-..|+|||..|-++...+...+.. .++++.|....
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 4467899999999999998888776654332 34544444333
No 226
>PLN03025 replication factor C subunit; Provisional
Probab=91.79 E-value=0.81 Score=54.11 Aligned_cols=49 Identities=14% Similarity=0.326 Sum_probs=30.3
Q ss_pred CcceEecchhcccCCc-chHHHHHHHcccccCeEEEeccCCCCCHHHHHH
Q 000684 305 KWNYLMVDEAHRLKNS-EAQLYTTLSEFSTKNKLLITGTPLQNSVEELWA 353 (1352)
Q Consensus 305 ~w~~lIVDEAHrlKN~-~Skl~~aL~~l~~~~rlLLTGTPlqNnl~EL~s 353 (1352)
.+.+|||||+|.+-.. ...+.+.+..+....+++|++++...-+..|-+
T Consensus 99 ~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~S 148 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQS 148 (319)
T ss_pred CeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHH
Confidence 5889999999999432 223344444445566788887765443344443
No 227
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.63 E-value=1.8 Score=52.53 Aligned_cols=131 Identities=11% Similarity=0.154 Sum_probs=71.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHhcC-CCCcEEEEEChh--hHHHHHHHHHHHcCCCeEEEEEcCchhHHHHHHHhh
Q 000684 196 TNVILADEMGLGKTVQSVSMLGFLQNAQQ-IPGPFLVVVPLS--TLSNWAKEFRKWLPTMNVIVYVGTRASREVCQQYEF 272 (1352)
Q Consensus 196 ~~~ILADEmGLGKTlqaIa~l~~L~~~~~-~~gp~LIVvP~s--~L~nW~~Ef~kw~p~l~vvvy~G~~~~r~~i~~~e~ 272 (1352)
..+++.-.+|.|||.++.-+...+..... ....+.+|+=-. .-..|+ +..|+-.+.+-+.
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ--L~~~a~~lgvpv~--------------- 237 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ--IQTYGDIMGIPVK--------------- 237 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH--HHHHhhcCCcceE---------------
Confidence 45678999999999988777666553321 223444444322 112222 5555422222111
Q ss_pred hccccCCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCCcch---HHHHHHHcccc--cCeEEEeccCCCCC
Q 000684 273 YNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEA---QLYTTLSEFST--KNKLLITGTPLQNS 347 (1352)
Q Consensus 273 ~~~~~~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN~~S---kl~~aL~~l~~--~~rlLLTGTPlqNn 347 (1352)
++.+|..+......+ -..++||||+|.+...... .+...+..... ...|.|++|-=++.
T Consensus 238 --------------~~~~~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~ 301 (388)
T PRK12723 238 --------------AIESFKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSD 301 (388)
T ss_pred --------------eeCcHHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHH
Confidence 122344443322223 3579999999999864332 33333333332 34588899987777
Q ss_pred HHHHHHHHhhcC
Q 000684 348 VEELWALLHFLD 359 (1352)
Q Consensus 348 l~EL~sLL~fL~ 359 (1352)
+.+++.-...+.
T Consensus 302 ~~~~~~~~~~~~ 313 (388)
T PRK12723 302 VKEIFHQFSPFS 313 (388)
T ss_pred HHHHHHHhcCCC
Confidence 777666554443
No 228
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=91.35 E-value=0.25 Score=58.83 Aligned_cols=31 Identities=29% Similarity=0.529 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHHHhhccCcchHHhHhhhh
Q 000684 937 CGWNQFDDARLLLGIHYHGFGNWENIRLDER 967 (1352)
Q Consensus 937 ~~W~~eeD~~LL~gI~kyGyG~We~Ir~D~~ 967 (1352)
-.||.+|+-.||-++..||||||+.|.+-+-
T Consensus 73 ~~WtadEEilLLea~~t~G~GNW~dIA~hIG 103 (438)
T KOG0457|consen 73 PSWTADEEILLLEAAETYGFGNWQDIADHIG 103 (438)
T ss_pred CCCChHHHHHHHHHHHHhCCCcHHHHHHHHc
Confidence 4699999999999999999999999999876
No 229
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=91.30 E-value=0.64 Score=54.98 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCC--cEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 184 GLNFLVNSWRNDT--NVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 184 gvnwL~~~~~~~~--~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
.+.+|......+. +.++.-+.|+|||..+.+++..+..
T Consensus 23 ~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 23 VVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred HHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3444444334555 7899999999999999998877753
No 230
>PRK06526 transposase; Provisional
Probab=90.67 E-value=0.75 Score=52.66 Aligned_cols=53 Identities=23% Similarity=0.321 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHHH
Q 000684 183 EGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFR 246 (1352)
Q Consensus 183 egvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef~ 246 (1352)
.+.+|+. .+.|++|....|+|||..+.++...+...+ .+++++ +...|..++.
T Consensus 90 ~~~~fi~----~~~nlll~Gp~GtGKThLa~al~~~a~~~g---~~v~f~----t~~~l~~~l~ 142 (254)
T PRK06526 90 GTLDFVT----GKENVVFLGPPGTGKTHLAIGLGIRACQAG---HRVLFA----TAAQWVARLA 142 (254)
T ss_pred hcCchhh----cCceEEEEeCCCCchHHHHHHHHHHHHHCC---Cchhhh----hHHHHHHHHH
Confidence 3446664 678899999999999999999887776532 233333 3345555554
No 231
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=90.30 E-value=1.3 Score=58.82 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=21.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 197 NVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 197 ~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
..||.-..|+|||..+..|...|..
T Consensus 39 a~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 39 AYLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCc
Confidence 3589999999999999999888764
No 232
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=90.00 E-value=1.9 Score=47.83 Aligned_cols=44 Identities=20% Similarity=0.208 Sum_probs=30.6
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHH
Q 000684 194 NDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNW 241 (1352)
Q Consensus 194 ~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW 241 (1352)
.+.+++|.-+.|+|||..+.++...+... ..+ ++.+..+.+..|
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~---~~~-~~~i~~~~~~~~ 80 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEER---GKS-AIYLPLAELAQA 80 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhc---CCc-EEEEeHHHHHHh
Confidence 45678899999999999988887766542 223 455566655544
No 233
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=89.52 E-value=1.6 Score=56.17 Aligned_cols=42 Identities=21% Similarity=0.180 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCCC--c-EEEEcCCCCcHHHHHHHHHHHHHHh
Q 000684 181 QLEGLNFLVNSWRNDT--N-VILADEMGLGKTVQSVSMLGFLQNA 222 (1352)
Q Consensus 181 QlegvnwL~~~~~~~~--~-~ILADEmGLGKTlqaIa~l~~L~~~ 222 (1352)
|...+..|...+..+. + .|+.-+.|+|||..+..|...+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 21 QEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 4444445555555543 2 4889999999999999998877653
No 234
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=89.18 E-value=2.4 Score=45.09 Aligned_cols=134 Identities=16% Similarity=0.199 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhcCCC---cEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHHH-HHcCCCeEEE
Q 000684 181 QLEGLNFLVNSWRNDT---NVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFR-KWLPTMNVIV 256 (1352)
Q Consensus 181 QlegvnwL~~~~~~~~---~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef~-kw~p~l~vvv 256 (1352)
|.+.+..|...+.++. ..|+..+.|.||+..+.+|+..+........ .|-. ... ...+. .-.|++.++
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~----~c~~--c~~-c~~~~~~~~~d~~~~- 73 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNED----PCGE--CRS-CRRIEEGNHPDFIII- 73 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT------SS--SHH-HHHHHTT-CTTEEEE-
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC----CCCC--CHH-HHHHHhccCcceEEE-
Confidence 5566667766666654 3588889999999999999998876543322 1221 111 11222 122343333
Q ss_pred EEcCch----hHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhh--ccCcceEecchhcccCC-cchHHHHHHH
Q 000684 257 YVGTRA----SREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLS--KIKWNYLMVDEAHRLKN-SEAQLYTTLS 329 (1352)
Q Consensus 257 y~G~~~----~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~--~i~w~~lIVDEAHrlKN-~~Skl~~aL~ 329 (1352)
..... ..+.++... +...+. .-.+.++|||+||+|-. ....+.+.|-
T Consensus 74 -~~~~~~~~i~i~~ir~i~-------------------------~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LE 127 (162)
T PF13177_consen 74 -KPDKKKKSIKIDQIREII-------------------------EFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLE 127 (162)
T ss_dssp -ETTTSSSSBSHHHHHHHH-------------------------HHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHH
T ss_pred -ecccccchhhHHHHHHHH-------------------------HHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhc
Confidence 22221 111111110 000111 12588999999999932 2334556666
Q ss_pred cccccCeEEEeccCCCCCH
Q 000684 330 EFSTKNKLLITGTPLQNSV 348 (1352)
Q Consensus 330 ~l~~~~rlLLTGTPlqNnl 348 (1352)
......+++|+.+-..+-+
T Consensus 128 epp~~~~fiL~t~~~~~il 146 (162)
T PF13177_consen 128 EPPENTYFILITNNPSKIL 146 (162)
T ss_dssp STTTTEEEEEEES-GGGS-
T ss_pred CCCCCEEEEEEECChHHCh
Confidence 6677777777776544433
No 235
>PRK08181 transposase; Validated
Probab=88.78 E-value=5.6 Score=45.99 Aligned_cols=47 Identities=15% Similarity=0.043 Sum_probs=34.9
Q ss_pred CCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHh
Q 000684 176 KLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNA 222 (1352)
Q Consensus 176 ~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~ 222 (1352)
.+..-|...+..+-.....+.|++|.-..|+|||-.+.++...+...
T Consensus 87 ~~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~ 133 (269)
T PRK08181 87 MVSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIEN 133 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHc
Confidence 35567777775443223477899999999999999998888777653
No 236
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.78 E-value=2.9 Score=53.56 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 197 NVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 197 ~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
..|+....|+|||..|.+++..+..
T Consensus 39 AyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4589999999999999888877653
No 237
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=88.53 E-value=3.1 Score=48.54 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=30.3
Q ss_pred HhhhhccCcceEecchhccc-CCcchH---HHHHHHcccccCe--EEEeccC
Q 000684 298 KAVLSKIKWNYLMVDEAHRL-KNSEAQ---LYTTLSEFSTKNK--LLITGTP 343 (1352)
Q Consensus 298 ~~~L~~i~w~~lIVDEAHrl-KN~~Sk---l~~aL~~l~~~~r--lLLTGTP 343 (1352)
...|..+...+|||||.|.+ .+...+ ...+|+.+....+ +.+.||+
T Consensus 138 ~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 138 LRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 46788889999999999996 333333 3344444544333 6677876
No 238
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=88.17 E-value=3.1 Score=47.54 Aligned_cols=43 Identities=19% Similarity=0.260 Sum_probs=30.4
Q ss_pred CcHHHHHHHHHHHHHhcCCC-cEEEEcCCCCcHHHHHHHHHHHH
Q 000684 177 LRDYQLEGLNFLVNSWRNDT-NVILADEMGLGKTVQSVSMLGFL 219 (1352)
Q Consensus 177 Lr~yQlegvnwL~~~~~~~~-~~ILADEmGLGKTlqaIa~l~~L 219 (1352)
..+.+..+++.+......+. .++|.-+.|+|||..+-.++..+
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 44556677777766555544 47889999999998777665444
No 239
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=87.98 E-value=3.3 Score=54.61 Aligned_cols=59 Identities=12% Similarity=0.078 Sum_probs=44.3
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhH
Q 000684 174 GGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTL 238 (1352)
Q Consensus 174 ~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L 238 (1352)
+..|.+-|.+++.-++. .+.-++|..-.|+|||..+-+++..+... ...+++++|+..-
T Consensus 350 ~~~Ls~~Q~~Av~~i~~---s~~~~il~G~aGTGKTtll~~i~~~~~~~---g~~V~~~ApTg~A 408 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTG---SGDIAVVVGRAGTGKSTMLKAAREAWEAA---GYRVIGAALSGKA 408 (744)
T ss_pred cCCCCHHHHHHHHHHhc---CCCEEEEEecCCCCHHHHHHHHHHHHHhC---CCeEEEEeCcHHH
Confidence 45799999999988763 24567899999999998876666555432 3468888998755
No 240
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.91 E-value=3.3 Score=52.87 Aligned_cols=41 Identities=17% Similarity=0.123 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhcCCC--c-EEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 181 QLEGLNFLVNSWRNDT--N-VILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 181 QlegvnwL~~~~~~~~--~-~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
|...+..|...+..+. + .|+.-..|+|||..+.+|+..+..
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4455555555444443 3 478999999999999999887764
No 241
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=87.80 E-value=2.9 Score=49.80 Aligned_cols=130 Identities=16% Similarity=0.161 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhcCCC--cE-EEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHHHHHcCCCeEEEE
Q 000684 181 QLEGLNFLVNSWRNDT--NV-ILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRKWLPTMNVIVY 257 (1352)
Q Consensus 181 QlegvnwL~~~~~~~~--~~-ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef~kw~p~l~vvvy 257 (1352)
|...+..|...+..+. ++ ++..+-|.|||..+.+|+..+.......+. |-..+.....-.....|+++++..
T Consensus 11 q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-----~cg~C~~c~~~~~~~hpD~~~i~~ 85 (329)
T PRK08058 11 QPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-----PCGTCTNCKRIDSGNHPDVHLVAP 85 (329)
T ss_pred HHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-----CCCcCHHHHHHhcCCCCCEEEecc
Confidence 5555666666655553 44 889999999999999998887653211111 222223333333344577776655
Q ss_pred EcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhh----ccCcceEecchhcccCCc-chHHHHHHHccc
Q 000684 258 VGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLS----KIKWNYLMVDEAHRLKNS-EAQLYTTLSEFS 332 (1352)
Q Consensus 258 ~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~----~i~w~~lIVDEAHrlKN~-~Skl~~aL~~l~ 332 (1352)
.|..-..+.+++ -...+. .-.+.++||||||++... ...+.+.|.+-.
T Consensus 86 ~~~~i~id~ir~---------------------------l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp 138 (329)
T PRK08058 86 DGQSIKKDQIRY---------------------------LKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPS 138 (329)
T ss_pred ccccCCHHHHHH---------------------------HHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCC
Confidence 443222222221 111111 125789999999999432 223444555545
Q ss_pred ccCeEEEecc
Q 000684 333 TKNKLLITGT 342 (1352)
Q Consensus 333 ~~~rlLLTGT 342 (1352)
....++|+.+
T Consensus 139 ~~~~~Il~t~ 148 (329)
T PRK08058 139 GGTTAILLTE 148 (329)
T ss_pred CCceEEEEeC
Confidence 5556666655
No 242
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.76 E-value=3 Score=52.55 Aligned_cols=41 Identities=22% Similarity=0.228 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCC---CcEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 181 QLEGLNFLVNSWRND---TNVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 181 QlegvnwL~~~~~~~---~~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
|...+..|......+ ...|+.-..|+|||..|..+...+..
T Consensus 21 q~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 21 QAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred CHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 334444444444333 23489999999999999888887754
No 243
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=87.73 E-value=3.6 Score=48.32 Aligned_cols=40 Identities=20% Similarity=0.324 Sum_probs=26.1
Q ss_pred CcceEecchhcccCCcc--hHHHHHHHcccccCeEEEeccCC
Q 000684 305 KWNYLMVDEAHRLKNSE--AQLYTTLSEFSTKNKLLITGTPL 344 (1352)
Q Consensus 305 ~w~~lIVDEAHrlKN~~--Skl~~aL~~l~~~~rlLLTGTPl 344 (1352)
...+|||||+|++.... ..+...+.......++++|++..
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 35789999999983322 23444455556677888887653
No 244
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=87.35 E-value=0.32 Score=64.23 Aligned_cols=34 Identities=21% Similarity=0.688 Sum_probs=26.7
Q ss_pred CCCCCCCCCcceEEEEecCCccccccccchhhhhc
Q 000684 4 LFDSEPDWNEMEFLIKWKGQSHLHCQWKSFAELQN 38 (1352)
Q Consensus 4 ~~d~~~~~~~~eyLVKWkg~SylH~tW~s~~~L~~ 38 (1352)
|.+.....+ .+|||||+|.+|-.||||..+.+..
T Consensus 291 Iia~~~~~d-~eYLvKW~~LpY~e~TWE~~~~I~~ 324 (1373)
T KOG0384|consen 291 IIAEQTSKD-PEYLVKWRGLPYEECTWEDAEDIAK 324 (1373)
T ss_pred hhhcccCCC-ceeEEEecCCCcccccccchhhhhh
Confidence 344333333 8999999999999999999988853
No 245
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=87.18 E-value=2.8 Score=50.20 Aligned_cols=46 Identities=26% Similarity=0.290 Sum_probs=34.9
Q ss_pred CCcHHHHHHHHHHHHHhcC---CCcEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 176 KLRDYQLEGLNFLVNSWRN---DTNVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 176 ~Lr~yQlegvnwL~~~~~~---~~~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
.=|+.|++.+.-.+..+.. ..+++|.-+.|+|||..+-+++..+..
T Consensus 18 ~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 18 VHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred CCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3488898888666554322 357899999999999999888887754
No 246
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=86.81 E-value=2.8 Score=49.90 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=35.5
Q ss_pred CCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHh
Q 000684 176 KLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNA 222 (1352)
Q Consensus 176 ~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~ 222 (1352)
.++|+|.....-++..-+-....++....|+|||..|.+|...+.-.
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~ 49 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCE 49 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCC
Confidence 35788888888887642222245689999999999999999888753
No 247
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=86.67 E-value=3.1 Score=52.46 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 198 VILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 198 ~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
.++..+.|.|||..+.+++..+..
T Consensus 39 yLf~Gp~G~GKTt~Ar~LAk~L~c 62 (535)
T PRK08451 39 YLFSGLRGSGKTSSARIFARALVC 62 (535)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Confidence 378999999999999999888764
No 248
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=86.65 E-value=7.3 Score=47.94 Aligned_cols=121 Identities=16% Similarity=0.123 Sum_probs=90.1
Q ss_pred HHHHHHhh--hcCCeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCC-ccC
Q 000684 499 DKLLVRLH--ETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAG-GLG 575 (1352)
Q Consensus 499 ~kLL~~l~--~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAg-g~G 575 (1352)
..+|+.+. ....++|||...--..-.|..||...++.|+.++--++..+-..+-..|..+. .-++|.+-|+- =.=
T Consensus 288 ~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~--~~iLL~TER~HFfrR 365 (442)
T PF06862_consen 288 KKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGR--KPILLYTERFHFFRR 365 (442)
T ss_pred HHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCC--ceEEEEEhHHhhhhh
Confidence 34777776 34568999988766666789999999999999999999999999999999843 33455555553 345
Q ss_pred CCCCccCEEEEcCCCCChhhHHHHhhhhcccCC----CceEEEEEEecCC
Q 000684 576 INLATADTVIIFDSDWNPQNDLQAMSRAHRIGQ----QEVVNIYRFVTSK 621 (1352)
Q Consensus 576 INL~~AdtVIi~DsdWNP~~dlQAigRahRiGQ----kk~V~VyrLvt~~ 621 (1352)
..+..+.+||+|.+|-+|+-|...+.-...-.+ ...+.|.-|.++-
T Consensus 366 y~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~ 415 (442)
T PF06862_consen 366 YRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKY 415 (442)
T ss_pred ceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHh
Confidence 667889999999999999999877654443332 2445666666653
No 249
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.62 E-value=3.3 Score=49.95 Aligned_cols=40 Identities=20% Similarity=0.181 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCCC--c-EEEEcCCCCcHHHHHHHHHHHHH
Q 000684 181 QLEGLNFLVNSWRNDT--N-VILADEMGLGKTVQSVSMLGFLQ 220 (1352)
Q Consensus 181 QlegvnwL~~~~~~~~--~-~ILADEmGLGKTlqaIa~l~~L~ 220 (1352)
|...+..+...+..+. + .++.-+.|+|||..+-+++..+.
T Consensus 21 q~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 21 QKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 5555555555555543 3 48999999999999988887775
No 250
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.52 E-value=3.3 Score=52.51 Aligned_cols=41 Identities=24% Similarity=0.312 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcCCC---cEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 181 QLEGLNFLVNSWRNDT---NVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 181 QlegvnwL~~~~~~~~---~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
|...+..|...+..+. ..|+.-+.|+|||..+..++..+..
T Consensus 21 q~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 21 QQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3334444444444433 3678999999999999999887764
No 251
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.41 E-value=3.5 Score=51.45 Aligned_cols=43 Identities=19% Similarity=0.054 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 179 DYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 179 ~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
++-...+..++..-.-....|+..+.|+|||..|-+++..+..
T Consensus 20 ~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 20 DHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3334444444432221223589999999999999888877653
No 252
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=86.41 E-value=2.5 Score=44.12 Aligned_cols=54 Identities=17% Similarity=0.282 Sum_probs=34.5
Q ss_pred EEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCC--CccCCCCCc--cCEEEEcCCCC
Q 000684 537 QRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRA--GGLGINLAT--ADTVIIFDSDW 591 (1352)
Q Consensus 537 ~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrA--gg~GINL~~--AdtVIi~DsdW 591 (1352)
+.+.+... .+...+++.|+......-.+|+++.. ..+|||++. +..||+.-.|+
T Consensus 23 i~~e~~~~-~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 23 VFIEGKDS-GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred EEEECCCC-chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 34444332 24467888998633211246666655 799999986 78888877664
No 253
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=86.25 E-value=3.8 Score=49.53 Aligned_cols=43 Identities=19% Similarity=0.352 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhcCCC---cEEEEcCCCCcHHHHHHHHHHHHHHhc
Q 000684 181 QLEGLNFLVNSWRNDT---NVILADEMGLGKTVQSVSMLGFLQNAQ 223 (1352)
Q Consensus 181 QlegvnwL~~~~~~~~---~~ILADEmGLGKTlqaIa~l~~L~~~~ 223 (1352)
|.+++..|...+..++ .-++.-..|+|||..+.+|..++....
T Consensus 24 q~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~ 69 (365)
T PRK07471 24 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATP 69 (365)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 6667777777777654 467899999999999999999997543
No 254
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.14 E-value=0.91 Score=56.14 Aligned_cols=107 Identities=19% Similarity=0.188 Sum_probs=56.9
Q ss_pred cCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEECh-hhHHHHHHHHHHHcCC----CeEEEEEcCchhHHHHHHHhhhccc
Q 000684 202 DEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPL-STLSNWAKEFRKWLPT----MNVIVYVGTRASREVCQQYEFYNDK 276 (1352)
Q Consensus 202 DEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~-s~L~nW~~Ef~kw~p~----l~vvvy~G~~~~r~~i~~~e~~~~~ 276 (1352)
+.+|.|||+++.++|.+++..+ ...||..|-. ++|..-...|..-+.. -.++.|.|..-.- +..+.+..
T Consensus 4 matgsgkt~~ma~lil~~y~kg--yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~i---kkvn~fse- 77 (812)
T COG3421 4 MATGSGKTLVMAGLILECYKKG--YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEI---KKVNNFSE- 77 (812)
T ss_pred cccCCChhhHHHHHHHHHHHhc--hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeee---eeecccCc-
Confidence 5689999999999998887643 4567777764 5665443333211100 0112222222111 11111111
Q ss_pred cCCCCccccEEEecHHHHHhhHh-------hhhccC--cceEecchhccc
Q 000684 277 KVGRPIKFNTLLTTYEVVLKDKA-------VLSKIK--WNYLMVDEAHRL 317 (1352)
Q Consensus 277 ~~~~~~kf~VlItTye~l~~d~~-------~L~~i~--w~~lIVDEAHrl 317 (1352)
......|+.||-+.+..+.. .+...+ -=+.+-||||+|
T Consensus 78 ---hnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhl 124 (812)
T COG3421 78 ---HNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHL 124 (812)
T ss_pred ---cCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhh
Confidence 22356788999887765522 111111 124567999999
No 255
>PRK08084 DNA replication initiation factor; Provisional
Probab=86.12 E-value=5.2 Score=45.19 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=22.0
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 194 NDTNVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 194 ~~~~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
.+.+.+|.-..|+|||-.+.++...+..
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3457899999999999887777766654
No 256
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=86.09 E-value=0.62 Score=40.77 Aligned_cols=26 Identities=27% Similarity=0.521 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHhhccCcchHHhHhh
Q 000684 939 WNQFDDARLLLGIHYHGFGNWENIRLD 965 (1352)
Q Consensus 939 W~~eeD~~LL~gI~kyGyG~We~Ir~D 965 (1352)
||.+||..|+-++.+||. +|.+|..-
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~ 26 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIAEH 26 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHHHH
Confidence 999999999999999995 79999653
No 257
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=86.02 E-value=3.6 Score=42.81 Aligned_cols=52 Identities=15% Similarity=0.208 Sum_probs=36.4
Q ss_pred EEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCCccCCCCCc--cCEEEEcCCCC
Q 000684 537 QRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLAT--ADTVIIFDSDW 591 (1352)
Q Consensus 537 ~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~--AdtVIi~DsdW 591 (1352)
+.+.| ....+...+++.|..... -.+|+++....+|||++. +..||+.-.|+
T Consensus 26 i~~e~-~~~~~~~~~l~~f~~~~~--~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 26 LLVQG-EDGKETGKLLEKYVEACE--NAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred EEEeC-CChhHHHHHHHHHHHcCC--CEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 34444 334457889999987322 257888877999999985 67888887554
No 258
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=85.81 E-value=6 Score=50.74 Aligned_cols=150 Identities=15% Similarity=0.160 Sum_probs=83.1
Q ss_pred CcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEECh-hhHHH----HHHHHH-----
Q 000684 177 LRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPL-STLSN----WAKEFR----- 246 (1352)
Q Consensus 177 Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~-s~L~n----W~~Ef~----- 246 (1352)
.-|+=++-|+.+...|.+.-.+++++ =|-|||..+..++.++....+ ..++|.+|. ++... -+.-++
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taP-RqrGKS~iVgi~l~~La~f~G--i~IlvTAH~~~ts~evF~rv~~~le~lg~~ 246 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVP-RRCGKTTIMAIILAAMISFLE--IDIVVQAQRKTMCLTLYNRVETVVHAYQHK 246 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEec-cCCCcHHHHHHHHHHHHHhcC--CeEEEECCChhhHHHHHHHHHHHHHHhccc
Confidence 45666777888888888888888876 699999887766666654322 358888984 22222 222233
Q ss_pred HHcCCCeEEE-EEcCchhHHHHHHHhhhccccCCCC-ccccEEEecHHHHHhhHhhhhccCcceEecchhcccCCcchHH
Q 000684 247 KWLPTMNVIV-YVGTRASREVCQQYEFYNDKKVGRP-IKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQL 324 (1352)
Q Consensus 247 kw~p~l~vvv-y~G~~~~r~~i~~~e~~~~~~~~~~-~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN~~Skl 324 (1352)
.|+|....++ ..|+... .+|..+ .+.. .+.-+... .+..+..+...+++||||||+-+.. ..+
T Consensus 247 ~~fp~~~~iv~vkgg~E~------I~f~~p--~gak~G~sti~F~-----Ars~~s~RG~~~DLLIVDEAAfI~~--~~l 311 (752)
T PHA03333 247 PWFPEEFKIVTLKGTDEN------LEYISD--PAAKEGKTTAHFL-----ASSPNAARGQNPDLVIVDEAAFVNP--GAL 311 (752)
T ss_pred cccCCCceEEEeeCCeeE------EEEecC--cccccCcceeEEe-----cccCCCcCCCCCCEEEEECcccCCH--HHH
Confidence 5777654332 3333211 111111 0011 11112221 1112345556789999999999965 223
Q ss_pred HHHHHccc-ccCeEEEeccCC
Q 000684 325 YTTLSEFS-TKNKLLITGTPL 344 (1352)
Q Consensus 325 ~~aL~~l~-~~~rlLLTGTPl 344 (1352)
...+-.+. ...++++..||.
T Consensus 312 ~aIlP~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 312 LSVLPLMAVKGTKQIHISSPV 332 (752)
T ss_pred HHHHHHHccCCCceEEEeCCC
Confidence 23222222 466777777774
No 259
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=85.69 E-value=5.8 Score=48.93 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=34.1
Q ss_pred CcceEecchhcccCCcchH---HHHHHHc--ccccCeEEEeccCCCCCHHHHHHHHhhcCC
Q 000684 305 KWNYLMVDEAHRLKNSEAQ---LYTTLSE--FSTKNKLLITGTPLQNSVEELWALLHFLDH 360 (1352)
Q Consensus 305 ~w~~lIVDEAHrlKN~~Sk---l~~aL~~--l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p 360 (1352)
.+++||||.+-+....... +...+.. ......++|++|+-++.+.+++..++.+.+
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~ 359 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPL 359 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCC
Confidence 5799999998775433221 2222221 122346889999877777777776665543
No 260
>PHA02533 17 large terminase protein; Provisional
Probab=85.68 E-value=4.2 Score=51.49 Aligned_cols=56 Identities=18% Similarity=0.086 Sum_probs=37.6
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEECh
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPL 235 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~ 235 (1352)
..|.|+|..-+..|. .++-.++.-.=..|||..+.+++.++.-. ....-+++++|.
T Consensus 58 f~L~p~Q~~i~~~~~----~~R~~ii~~aRq~GKStl~a~~al~~a~~-~~~~~v~i~A~~ 113 (534)
T PHA02533 58 VQMRDYQKDMLKIMH----KNRFNACNLSRQLGKTTVVAIFLLHYVCF-NKDKNVGILAHK 113 (534)
T ss_pred cCCcHHHHHHHHHHh----cCeEEEEEEcCcCChHHHHHHHHHHHHHh-CCCCEEEEEeCC
Confidence 579999999888763 22334566667899999877665444332 223467888884
No 261
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=85.67 E-value=4.1 Score=49.67 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=21.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 197 NVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 197 ~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
..|+....|.|||..+.+|...+..
T Consensus 38 a~Lf~Gp~G~GKt~lA~~lA~~l~c 62 (394)
T PRK07940 38 AWLFTGPPGSGRSVAARAFAAALQC 62 (394)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4678999999999999999877654
No 262
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=85.25 E-value=0.71 Score=49.52 Aligned_cols=38 Identities=24% Similarity=0.400 Sum_probs=26.5
Q ss_pred ccccEEEecHHHHHhhHhh--hh--ccCcceEecchhcccCC
Q 000684 282 IKFNTLLTTYEVVLKDKAV--LS--KIKWNYLMVDEAHRLKN 319 (1352)
Q Consensus 282 ~kf~VlItTye~l~~d~~~--L~--~i~w~~lIVDEAHrlKN 319 (1352)
...+|||++|..+...... +. ..+-.+|||||||+|-+
T Consensus 118 ~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred ccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 3679999999999875332 21 23457899999999943
No 263
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.25 E-value=5.8 Score=48.50 Aligned_cols=41 Identities=22% Similarity=0.164 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCCC---cEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 181 QLEGLNFLVNSWRNDT---NVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 181 QlegvnwL~~~~~~~~---~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
|...+..|...+.++. ..|+..+.|+|||..|.+|...+..
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4444555555555543 3678999999999999999888764
No 264
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=84.91 E-value=4 Score=51.34 Aligned_cols=41 Identities=22% Similarity=0.188 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCCC---cEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 181 QLEGLNFLVNSWRNDT---NVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 181 QlegvnwL~~~~~~~~---~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
|...+..|.+.+..+. ..||..+.|+|||..|-.+...+..
T Consensus 26 q~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 26 QEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4445555554444544 6889999999999999988887754
No 265
>PF13245 AAA_19: Part of AAA domain
Probab=84.77 E-value=2.8 Score=38.88 Aligned_cols=44 Identities=20% Similarity=0.213 Sum_probs=33.2
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHh-cCCCCcEEEEEChhhH
Q 000684 195 DTNVILADEMGLGKTVQSVSMLGFLQNA-QQIPGPFLVVVPLSTL 238 (1352)
Q Consensus 195 ~~~~ILADEmGLGKTlqaIa~l~~L~~~-~~~~gp~LIVvP~s~L 238 (1352)
+.-+++.-..|+|||.+++..+.++... ......+|||+|....
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~a 54 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAA 54 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHH
Confidence 3445668999999999998888888743 1125679999998655
No 266
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.74 E-value=4.5 Score=50.62 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCC---CcEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 183 EGLNFLVNSWRND---TNVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 183 egvnwL~~~~~~~---~~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
..+..|...+..+ ...|+....|+|||..|..+...+..
T Consensus 20 ~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC 61 (491)
T PRK14964 20 VLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNC 61 (491)
T ss_pred HHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcC
Confidence 3344444444444 35789999999999998888766654
No 267
>PRK08116 hypothetical protein; Validated
Probab=84.39 E-value=7.9 Score=44.76 Aligned_cols=44 Identities=20% Similarity=0.223 Sum_probs=31.6
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHH
Q 000684 195 DTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNW 241 (1352)
Q Consensus 195 ~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW 241 (1352)
+.+.+|.-+.|+|||..+.+++..+... ..+++++.-..++...
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~---~~~v~~~~~~~ll~~i 157 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEK---GVPVIFVNFPQLLNRI 157 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHHHHHHHH
Confidence 3468999999999999999999988764 2455555433444433
No 268
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.21 E-value=11 Score=46.53 Aligned_cols=122 Identities=15% Similarity=0.213 Sum_probs=83.5
Q ss_pred HHHHHHHHhhhcC-CeEEEEecchhHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCCC-cc
Q 000684 497 ILDKLLVRLHETK-HRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAG-GL 574 (1352)
Q Consensus 497 ~L~kLL~~l~~~g-~KVLIFSq~~~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrAg-g~ 574 (1352)
++.+|++.+...+ .-+|||-..---.-.|..||+..++.|..++-=++.+.-..+-+-|..+.. -++|.+-|+- =.
T Consensus 539 Fv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~--~vlLyTER~hffr 616 (698)
T KOG2340|consen 539 FVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRK--SVLLYTERAHFFR 616 (698)
T ss_pred HHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCc--eEEEEehhhhhhh
Confidence 4567888777544 457787765555556788999999999988887777776777777877433 3455565663 45
Q ss_pred CCCCCccCEEEEcCCCCChhhHHH---HhhhhcccCCC--ceEEEEEEecC
Q 000684 575 GINLATADTVIIFDSDWNPQNDLQ---AMSRAHRIGQQ--EVVNIYRFVTS 620 (1352)
Q Consensus 575 GINL~~AdtVIi~DsdWNP~~dlQ---AigRahRiGQk--k~V~VyrLvt~ 620 (1352)
-..+.....||+|.||-||+-|.- -++|+--.|.+ ..-.|--|.++
T Consensus 617 R~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytK 667 (698)
T KOG2340|consen 617 RYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTK 667 (698)
T ss_pred hheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeec
Confidence 667888999999999999998854 34455544543 23344445554
No 269
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=84.17 E-value=4.5 Score=49.55 Aligned_cols=71 Identities=20% Similarity=0.105 Sum_probs=55.1
Q ss_pred cccCCCccCCCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEECh
Q 000684 165 LDEQPEWLRGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPL 235 (1352)
Q Consensus 165 ~~~~P~~~~~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~ 235 (1352)
++..|.+++....+|-|.+-+.-+......+++|+|-+..|+|||+.-++++............-||-|..
T Consensus 5 id~l~v~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSR 75 (755)
T KOG1131|consen 5 IDDLLVYFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSR 75 (755)
T ss_pred ecCeeEecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecC
Confidence 34566677777899999999888888999999999999999999999988765544433333334787764
No 270
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=84.07 E-value=6.4 Score=42.60 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=22.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHHHh
Q 000684 197 NVILADEMGLGKTVQSVSMLGFLQNA 222 (1352)
Q Consensus 197 ~~ILADEmGLGKTlqaIa~l~~L~~~ 222 (1352)
..++..+.|.|||..+..++..+...
T Consensus 16 ~~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 16 AYLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 46789999999999999998887653
No 271
>PRK14974 cell division protein FtsY; Provisional
Probab=84.06 E-value=7.9 Score=46.22 Aligned_cols=35 Identities=14% Similarity=0.230 Sum_probs=24.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEC
Q 000684 197 NVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVP 234 (1352)
Q Consensus 197 ~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP 234 (1352)
-+++.-..|.|||.++..++.++... ...+++|..
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~---g~~V~li~~ 176 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKN---GFSVVIAAG 176 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEecC
Confidence 35678899999999887777766543 234455543
No 272
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=83.96 E-value=11 Score=38.65 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=26.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChh
Q 000684 198 VILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLS 236 (1352)
Q Consensus 198 ~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s 236 (1352)
.+|.-..|+|||..+..++..+.. ..++++++....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~e~ 37 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDIEE 37 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECCc
Confidence 467778999999999888877754 346677776643
No 273
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=83.71 E-value=11 Score=45.77 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=20.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 196 TNVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 196 ~~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
..+.|.-..|.|||..+..+...+..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~ 267 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHG 267 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 34568888999999988888776653
No 274
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=83.62 E-value=9.7 Score=49.35 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=21.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 197 NVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 197 ~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
..||.-..|+|||..+.+|...|..
T Consensus 40 a~Lf~GP~GvGKTTlAriLAk~LnC 64 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARILAKSLNC 64 (709)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcc
Confidence 4689999999999999888877654
No 275
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=83.40 E-value=1.2 Score=56.73 Aligned_cols=163 Identities=20% Similarity=0.244 Sum_probs=96.8
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhH-HHHHH-HHHHH---c
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTL-SNWAK-EFRKW---L 249 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L-~nW~~-Ef~kw---~ 249 (1352)
....|||.+-++.|-... -..+.+.-..-+|||...+.++.+.... ..+|+|+|.|+... ..|.. .|.-. +
T Consensus 15 ~~~~Py~~eimd~~~~~~--v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~--~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~s 90 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPS--VREVVVMKSAQVGKTELLLNWIGYSIDQ--DPGPMLYVQPTDDAAKDFSKERLDPMIRAS 90 (557)
T ss_pred CCCChhHHHHHHhcCCcC--ccEEEEEEcchhhHhHHHHhhceEEEEe--CCCCEEEEEEcHHHHHHHHHHHHHHHHHhC
Confidence 478999999998885422 3467788888999999888888777654 46899999998654 55654 33332 2
Q ss_pred CCCeEEEEE-cCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccC----CcchH-
Q 000684 250 PTMNVIVYV-GTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLK----NSEAQ- 323 (1352)
Q Consensus 250 p~l~vvvy~-G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlK----N~~Sk- 323 (1352)
|.+.-.+.. ........+....| ..-.+.+.... -...|.....++|++||..++- +....
T Consensus 91 p~l~~~~~~~~~~~~~~t~~~k~f---------~gg~l~~~ga~----S~~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~ 157 (557)
T PF05876_consen 91 PVLRRKLSPSKSRDSGNTILYKRF---------PGGFLYLVGAN----SPSNLRSRPARYLLLDEVDRYPDDVGGEGDPV 157 (557)
T ss_pred HHHHHHhCchhhcccCCchhheec---------CCCEEEEEeCC----CCcccccCCcCEEEEechhhccccCccCCCHH
Confidence 333211111 00001111110000 01123333222 2356778889999999999982 22233
Q ss_pred --HHHHHHcccccCeEEEeccCCCCCHHHHHHH
Q 000684 324 --LYTTLSEFSTKNKLLITGTPLQNSVEELWAL 354 (1352)
Q Consensus 324 --l~~aL~~l~~~~rlLLTGTPlqNnl~EL~sL 354 (1352)
..+-...|....++++..||.......++.+
T Consensus 158 ~la~~R~~tf~~~~K~~~~STPt~~~~~~I~~~ 190 (557)
T PF05876_consen 158 ELAEKRTKTFGSNRKILRISTPTIEGTSRIERL 190 (557)
T ss_pred HHHHHHHhhhccCcEEEEeCCCCCCCCCHHHHH
Confidence 3333445667788999999987654444443
No 276
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=83.24 E-value=4.8 Score=51.71 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhcCCC---cEEEEcCCCCcHHHHHHHHHHHHHHh
Q 000684 181 QLEGLNFLVNSWRNDT---NVILADEMGLGKTVQSVSMLGFLQNA 222 (1352)
Q Consensus 181 QlegvnwL~~~~~~~~---~~ILADEmGLGKTlqaIa~l~~L~~~ 222 (1352)
|-..+..|...+..++ ..||.-..|+|||..+..+...|...
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 4444444554444443 57889999999999999998887643
No 277
>PF13173 AAA_14: AAA domain
Probab=83.18 E-value=6.1 Score=40.05 Aligned_cols=39 Identities=23% Similarity=0.381 Sum_probs=26.0
Q ss_pred CcceEecchhcccCCcchHHHHHHHcccccCeEEEeccCC
Q 000684 305 KWNYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPL 344 (1352)
Q Consensus 305 ~w~~lIVDEAHrlKN~~Skl~~aL~~l~~~~rlLLTGTPl 344 (1352)
.-.+|||||+|++.+....+-..+.. ..+.++++||+-.
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d~-~~~~~ii~tgS~~ 99 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVDN-GPNIKIILTGSSS 99 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHHh-ccCceEEEEccch
Confidence 45789999999997644333333332 2457899999853
No 278
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=82.75 E-value=7.9 Score=45.90 Aligned_cols=47 Identities=13% Similarity=0.273 Sum_probs=39.9
Q ss_pred CCcHHHHHHHHHHHHHhcCCC---cEEEEcCCCCcHHHHHHHHHHHHHHh
Q 000684 176 KLRDYQLEGLNFLVNSWRNDT---NVILADEMGLGKTVQSVSMLGFLQNA 222 (1352)
Q Consensus 176 ~Lr~yQlegvnwL~~~~~~~~---~~ILADEmGLGKTlqaIa~l~~L~~~ 222 (1352)
.++|+|......+...+.+++ ..++....|+||+..|.+|+..+.-.
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~ 53 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLAS 53 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCC
Confidence 589999999999888877665 46789999999999999999888753
No 279
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.73 E-value=6.2 Score=49.82 Aligned_cols=96 Identities=16% Similarity=0.217 Sum_probs=73.1
Q ss_pred hhcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEee
Q 000684 490 LSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYK-GFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLS 568 (1352)
Q Consensus 490 ~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~-g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLS 568 (1352)
..|||..+...++......|.+|||.+........+.+.|... |.....++|.++..+|.....+-..+.. .|++.
T Consensus 6 TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~---~IVVG 82 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEI---LVVIG 82 (505)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCC---CEEEC
Confidence 4699999988888888888999999999988887777777643 7789999999999999887776655332 36777
Q ss_pred cCCCccCCCCCccCEEEEcCC
Q 000684 569 TRAGGLGINLATADTVIIFDS 589 (1352)
Q Consensus 569 TrAgg~GINL~~AdtVIi~Ds 589 (1352)
|+.. +=+-+...+.||+-+-
T Consensus 83 Trsa-lf~p~~~l~lIIVDEe 102 (505)
T TIGR00595 83 TRSA-LFLPFKNLGLIIVDEE 102 (505)
T ss_pred ChHH-HcCcccCCCEEEEECC
Confidence 7753 2244666777777553
No 280
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=82.66 E-value=4.5 Score=40.31 Aligned_cols=36 Identities=25% Similarity=0.384 Sum_probs=25.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHH
Q 000684 198 VILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLS 239 (1352)
Q Consensus 198 ~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~ 239 (1352)
.+|.-..|.|||..+-.++..+ .-+++.|....+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l------~~~~~~i~~~~~~~ 36 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL------GFPFIEIDGSELIS 36 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT------TSEEEEEETTHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc------cccccccccccccc
Confidence 3677899999999887777665 23566666666553
No 281
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=82.64 E-value=8 Score=52.29 Aligned_cols=59 Identities=12% Similarity=-0.019 Sum_probs=41.1
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhH
Q 000684 174 GGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTL 238 (1352)
Q Consensus 174 ~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L 238 (1352)
+..|.+-|.+++..++. .+.-++|.--.|+|||.+.-+++..+.. . ...+++++|+..-
T Consensus 344 g~~Ls~eQr~Av~~il~---s~~v~vv~G~AGTGKTT~l~~~~~~~e~-~--G~~V~~~ApTGkA 402 (988)
T PRK13889 344 GLVLSGEQADALAHVTD---GRDLGVVVGYAGTGKSAMLGVAREAWEA-A--GYEVRGAALSGIA 402 (988)
T ss_pred CCCCCHHHHHHHHHHhc---CCCeEEEEeCCCCCHHHHHHHHHHHHHH-c--CCeEEEecCcHHH
Confidence 45799999999998763 2335788899999999864444433332 2 2357888887654
No 282
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.60 E-value=4.8 Score=51.03 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=20.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 197 NVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 197 ~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
..|+....|+|||..|-.|+..+..
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3589999999999999888877753
No 283
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.60 E-value=6.6 Score=49.47 Aligned_cols=41 Identities=17% Similarity=0.214 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCCC--cE-EEEcCCCCcHHHHHHHHHHHHHH
Q 000684 181 QLEGLNFLVNSWRNDT--NV-ILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 181 QlegvnwL~~~~~~~~--~~-ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
|...+..|......+. +. ++.-+.|+|||..+.+|+..+..
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3444444444434443 33 89999999999999999888764
No 284
>PRK06921 hypothetical protein; Provisional
Probab=82.45 E-value=11 Score=43.52 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=24.6
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHHh
Q 000684 194 NDTNVILADEMGLGKTVQSVSMLGFLQNA 222 (1352)
Q Consensus 194 ~~~~~ILADEmGLGKTlqaIa~l~~L~~~ 222 (1352)
.+.+.+|.-++|+|||..+.|++..+...
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~ 144 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRK 144 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhh
Confidence 36678999999999999999998877653
No 285
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=82.33 E-value=9.3 Score=44.69 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHH
Q 000684 197 NVILADEMGLGKTVQSVSMLGFLQ 220 (1352)
Q Consensus 197 ~~ILADEmGLGKTlqaIa~l~~L~ 220 (1352)
+.+|.-+.|+|||..+-+++..+.
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Confidence 589999999999998887776654
No 286
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=82.18 E-value=8.9 Score=46.46 Aligned_cols=61 Identities=15% Similarity=0.213 Sum_probs=40.3
Q ss_pred HHHHHHHHH-HhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHH
Q 000684 182 LEGLNFLVN-SWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEF 245 (1352)
Q Consensus 182 legvnwL~~-~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef 245 (1352)
..+++.++. -+..+.-++|.-++|.|||..++.++..+... .+++|+|.-.....+.....
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~---g~~VlYvs~EEs~~qi~~Ra 129 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR---GGKVLYVSGEESPEQIKLRA 129 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEECCcCHHHHHHHH
Confidence 456666652 23344557889999999999988888766543 35778887655555544333
No 287
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=81.87 E-value=4.9 Score=33.58 Aligned_cols=30 Identities=20% Similarity=0.367 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHHHHhcCCchhHHHHHHHhC
Q 000684 817 NLSKRDATRFYRAVMKFGNQSQISLIARDAG 847 (1352)
Q Consensus 817 ~~~~~~~~~f~~~~~k~G~~~~~~~I~~e~~ 847 (1352)
.||..|-..|+.++.+||. .+...||..+.
T Consensus 3 ~Wt~eE~~~l~~~v~~~g~-~~W~~Ia~~~~ 32 (48)
T PF00249_consen 3 PWTEEEDEKLLEAVKKYGK-DNWKKIAKRMP 32 (48)
T ss_dssp SS-HHHHHHHHHHHHHSTT-THHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCC-cHHHHHHHHcC
Confidence 5999999999999999997 46999999987
No 288
>PRK05580 primosome assembly protein PriA; Validated
Probab=80.40 E-value=9.1 Score=50.15 Aligned_cols=95 Identities=11% Similarity=0.128 Sum_probs=72.7
Q ss_pred hcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHh-cCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeec
Q 000684 491 SSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSY-KGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLST 569 (1352)
Q Consensus 491 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~-~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLST 569 (1352)
.|||..+...++......|.++||.+........+.+.|.. .|.....++|+++..+|.....+...+.. -+++.|
T Consensus 172 GSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~---~IVVgT 248 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEA---KVVIGA 248 (679)
T ss_pred CChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCC---CEEEec
Confidence 57898888777777777799999999999888877777764 37889999999999999888877765432 377888
Q ss_pred CCCccCCCCCccCEEEEcCC
Q 000684 570 RAGGLGINLATADTVIIFDS 589 (1352)
Q Consensus 570 rAgg~GINL~~AdtVIi~Ds 589 (1352)
+.. .=+.+.....||+-+-
T Consensus 249 rsa-l~~p~~~l~liVvDEe 267 (679)
T PRK05580 249 RSA-LFLPFKNLGLIIVDEE 267 (679)
T ss_pred cHH-hcccccCCCEEEEECC
Confidence 753 2355667777777654
No 289
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=80.27 E-value=9.4 Score=42.03 Aligned_cols=131 Identities=18% Similarity=0.247 Sum_probs=65.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHHHHHcCCCeEEEEEcCch--hHHHHHHHhhhcc
Q 000684 198 VILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRKWLPTMNVIVYVGTRA--SREVCQQYEFYND 275 (1352)
Q Consensus 198 ~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef~kw~p~l~vvvy~G~~~--~r~~i~~~e~~~~ 275 (1352)
.++.-.+|.|||.++.-+..++... ..++.||-+-..-+. =.++++.|+--+.+-++.-... ...
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~g-a~eQL~~~a~~l~vp~~~~~~~~~~~~---------- 70 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIG-AVEQLKTYAEILGVPFYVARTESDPAE---------- 70 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTH-HHHHHHHHHHHHTEEEEESSTTSCHHH----------
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCcc-HHHHHHHHHHHhccccchhhcchhhHH----------
Confidence 4678899999999988888777654 334444444332222 2344555543334433322111 111
Q ss_pred ccCCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCCcchH---HHHHHHcc-cccCeEEEeccCCCCCHHHH
Q 000684 276 KKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQ---LYTTLSEF-STKNKLLITGTPLQNSVEEL 351 (1352)
Q Consensus 276 ~~~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN~~Sk---l~~aL~~l-~~~~rlLLTGTPlqNnl~EL 351 (1352)
.+......+..-+.++|+||-+-+.-+.... +.+.+... ....-|.|++|--+..+.++
T Consensus 71 -----------------~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~ 133 (196)
T PF00448_consen 71 -----------------IAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQA 133 (196)
T ss_dssp -----------------HHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHH
T ss_pred -----------------HHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHH
Confidence 1111222333445789999998877544332 22222222 23345777887655555544
Q ss_pred HHHHhhc
Q 000684 352 WALLHFL 358 (1352)
Q Consensus 352 ~sLL~fL 358 (1352)
......+
T Consensus 134 ~~~~~~~ 140 (196)
T PF00448_consen 134 LAFYEAF 140 (196)
T ss_dssp HHHHHHS
T ss_pred HHHhhcc
Confidence 4443333
No 290
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=80.27 E-value=9.8 Score=48.67 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=20.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 197 NVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 197 ~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
..|+.-+.|+|||..+-.|...+..
T Consensus 40 ayLf~Gp~GtGKTt~Ak~lAkal~c 64 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIFAKAVNC 64 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3577999999999999888877654
No 291
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=80.24 E-value=16 Score=48.40 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=33.1
Q ss_pred CCcHHHHHHHHHHHHHhcC--C-CcEE-EEcCCCCcHHHHHHHHHHHHHH
Q 000684 176 KLRDYQLEGLNFLVNSWRN--D-TNVI-LADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 176 ~Lr~yQlegvnwL~~~~~~--~-~~~I-LADEmGLGKTlqaIa~l~~L~~ 221 (1352)
.-|+-|++.|..++...-. + .++| |.-.+|+|||.++-.++..|..
T Consensus 758 PhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 758 PCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3588888888665544322 2 2454 8999999999999888877754
No 292
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=80.19 E-value=8.6 Score=49.16 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=21.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 197 NVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 197 ~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
..|+.-+.|.|||..+.+++..+..
T Consensus 40 ayLf~Gp~G~GKTt~Ar~lAk~L~c 64 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARAFARCLNC 64 (563)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhcc
Confidence 3589999999999999999887764
No 293
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=80.06 E-value=11 Score=41.94 Aligned_cols=50 Identities=14% Similarity=-0.008 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEE
Q 000684 181 QLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVV 233 (1352)
Q Consensus 181 QlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVv 233 (1352)
.+..+..+......+...+|.-+.|+|||..+.++...+... ..++++|.
T Consensus 28 ~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~---~~~~~~i~ 77 (227)
T PRK08903 28 LVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG---GRNARYLD 77 (227)
T ss_pred HHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC---CCcEEEEe
Confidence 444444333322345678999999999999888777665442 23444444
No 294
>PRK04195 replication factor C large subunit; Provisional
Probab=80.05 E-value=11 Score=47.37 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=30.9
Q ss_pred CCCcHHHHHHHHHHHHHhcC---CCcEEEEcCCCCcHHHHHHHHHHHH
Q 000684 175 GKLRDYQLEGLNFLVNSWRN---DTNVILADEMGLGKTVQSVSMLGFL 219 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~---~~~~ILADEmGLGKTlqaIa~l~~L 219 (1352)
....+.+++.+.-++..|.+ ...++|.-+.|+|||..+-+++..+
T Consensus 16 lvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 16 VVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred hcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34455566666444455554 4578999999999998887776544
No 295
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.99 E-value=9 Score=49.20 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=21.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 197 NVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 197 ~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
..|+.-+.|+|||..|..|...+..
T Consensus 40 a~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred eEEEECCCCCCHHHHHHHHHHhccc
Confidence 4678999999999999999887764
No 296
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.66 E-value=13 Score=47.69 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHh
Q 000684 198 VILADEMGLGKTVQSVSMLGFLQNA 222 (1352)
Q Consensus 198 ~ILADEmGLGKTlqaIa~l~~L~~~ 222 (1352)
.|+.-+-|+|||..+.+|+..+...
T Consensus 41 yLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 41 FLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred EEEECCCCCCHHHHHHHHHHhhcCC
Confidence 4789999999999999998887643
No 297
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.65 E-value=9.3 Score=47.98 Aligned_cols=40 Identities=25% Similarity=0.234 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCCC--cE-EEEcCCCCcHHHHHHHHHHHHH
Q 000684 181 QLEGLNFLVNSWRNDT--NV-ILADEMGLGKTVQSVSMLGFLQ 220 (1352)
Q Consensus 181 QlegvnwL~~~~~~~~--~~-ILADEmGLGKTlqaIa~l~~L~ 220 (1352)
|...+..|.....++. ++ ++.-+.|.|||..|..+...+.
T Consensus 21 q~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 21 QEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4455555555555443 33 6799999999998888877665
No 298
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=79.41 E-value=2.3 Score=37.29 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHHHHHhhccCcch---HHhHh
Q 000684 937 CGWNQFDDARLLLGIHYHGFGNW---ENIRL 964 (1352)
Q Consensus 937 ~~W~~eeD~~LL~gI~kyGyG~W---e~Ir~ 964 (1352)
..||+++....|.||..+|.|+| ..|..
T Consensus 4 ~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~ 34 (57)
T TIGR01557 4 VVWTEDLHDRFLQAVQKLGGPDWATPKRILE 34 (57)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccchHHHHH
Confidence 56999999999999999999999 88864
No 299
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.32 E-value=7.4 Score=50.30 Aligned_cols=41 Identities=20% Similarity=0.135 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCC---CcEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 181 QLEGLNFLVNSWRND---TNVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 181 QlegvnwL~~~~~~~---~~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
|...+..|...+..+ ...|+..+.|+|||..|.+|+..|..
T Consensus 21 q~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 21 QEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcC
Confidence 444455555444444 34589999999999999999988864
No 300
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=79.18 E-value=9.1 Score=51.36 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhc--CCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 181 QLEGLNFLVNSWR--NDTNVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 181 QlegvnwL~~~~~--~~~~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
|..-+..++..++ ...|.||.-+.|.|||..+=++...+..
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~ 234 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAA 234 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhh
Confidence 4444666665333 3468999999999999988777665543
No 301
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=79.07 E-value=11 Score=44.74 Aligned_cols=46 Identities=11% Similarity=0.231 Sum_probs=36.8
Q ss_pred CcHHHHHHHHHHHHHhcCCC---cEEEEcCCCCcHHHHHHHHHHHHHHh
Q 000684 177 LRDYQLEGLNFLVNSWRNDT---NVILADEMGLGKTVQSVSMLGFLQNA 222 (1352)
Q Consensus 177 Lr~yQlegvnwL~~~~~~~~---~~ILADEmGLGKTlqaIa~l~~L~~~ 222 (1352)
++|+|...-.-|...+.+++ .-++..+.|+||+..|.+|..++.-.
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~ 51 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQ 51 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 57888888777877776654 44678999999999999999888753
No 302
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.77 E-value=10 Score=48.88 Aligned_cols=41 Identities=22% Similarity=0.234 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhcCCC--c-EEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 181 QLEGLNFLVNSWRNDT--N-VILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 181 QlegvnwL~~~~~~~~--~-~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
|...+..|...+..+. + .|+.-..|+|||..+..+...|..
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4445555554444443 3 488999999999999988877764
No 303
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=78.68 E-value=21 Score=43.29 Aligned_cols=46 Identities=26% Similarity=0.314 Sum_probs=33.5
Q ss_pred CcHHHHHHHHHHHHHhc---CCCcEEEEcCCCCcHHHHHHHHHHHHHHh
Q 000684 177 LRDYQLEGLNFLVNSWR---NDTNVILADEMGLGKTVQSVSMLGFLQNA 222 (1352)
Q Consensus 177 Lr~yQlegvnwL~~~~~---~~~~~ILADEmGLGKTlqaIa~l~~L~~~ 222 (1352)
=|+-|++-+.-.+..+. ...+++|.-..|+|||..+-.++..+...
T Consensus 34 ~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~ 82 (394)
T PRK00411 34 HREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEI 82 (394)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 36777777655554332 33578999999999999998888777654
No 304
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=78.48 E-value=4.6 Score=46.76 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=40.4
Q ss_pred CcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhc-CCCCcEEEEEChhhH
Q 000684 177 LRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQ-QIPGPFLVVVPLSTL 238 (1352)
Q Consensus 177 Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~-~~~gp~LIVvP~s~L 238 (1352)
|.+-|...|++ . ..+.++-...|+|||.+.+.-+.++.... -....+|||+++...
T Consensus 1 l~~eQ~~~i~~-~-----~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~a 57 (315)
T PF00580_consen 1 LTDEQRRIIRS-T-----EGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAA 57 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHH
T ss_pred CCHHHHHHHhC-C-----CCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHH
Confidence 55778888876 2 35566666799999999988888887765 334569999998654
No 305
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=78.36 E-value=11 Score=48.15 Aligned_cols=39 Identities=23% Similarity=0.216 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCC---CcEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 183 EGLNFLVNSWRND---TNVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 183 egvnwL~~~~~~~---~~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
..+..|...+.++ ...|+.-..|.|||..|.++...+..
T Consensus 23 ~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 23 LIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred HHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3344444444343 34678999999999999999888754
No 306
>PRK08727 hypothetical protein; Validated
Probab=77.97 E-value=11 Score=42.64 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=20.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 197 NVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 197 ~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
..+|....|+|||-.+.++...+..
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~ 67 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQ 67 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999888888777654
No 307
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=77.85 E-value=12 Score=43.81 Aligned_cols=29 Identities=17% Similarity=0.246 Sum_probs=23.9
Q ss_pred CCc-EEEEcCCCCcHHHHHHHHHHHHHHhc
Q 000684 195 DTN-VILADEMGLGKTVQSVSMLGFLQNAQ 223 (1352)
Q Consensus 195 ~~~-~ILADEmGLGKTlqaIa~l~~L~~~~ 223 (1352)
... .++....|+|||..|.++...+....
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA~~l~~~~ 52 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALAKELLCEN 52 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHHHHHhCCC
Confidence 344 78899999999999999998887543
No 308
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=76.92 E-value=16 Score=43.30 Aligned_cols=48 Identities=10% Similarity=0.019 Sum_probs=39.0
Q ss_pred CCcHHHHHHHHHHHHHhcCCC---cEEEEcCCCCcHHHHHHHHHHHHHHhc
Q 000684 176 KLRDYQLEGLNFLVNSWRNDT---NVILADEMGLGKTVQSVSMLGFLQNAQ 223 (1352)
Q Consensus 176 ~Lr~yQlegvnwL~~~~~~~~---~~ILADEmGLGKTlqaIa~l~~L~~~~ 223 (1352)
.++|+|...-..+...+.+++ .-++....|+||+..|.+|..++.-..
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~ 53 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQN 53 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 477888888888887776665 567899999999999999998887543
No 309
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=76.92 E-value=21 Score=43.77 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=21.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHHHh
Q 000684 197 NVILADEMGLGKTVQSVSMLGFLQNA 222 (1352)
Q Consensus 197 ~~ILADEmGLGKTlqaIa~l~~L~~~ 222 (1352)
..+|.-..|+|||..+.++...+...
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~ 163 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILEN 163 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 46899999999999988888877654
No 310
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=76.79 E-value=22 Score=44.15 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=22.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHh
Q 000684 196 TNVILADEMGLGKTVQSVSMLGFLQNA 222 (1352)
Q Consensus 196 ~~~ILADEmGLGKTlqaIa~l~~L~~~ 222 (1352)
...+|....|+|||..+-++...+...
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~ 175 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEK 175 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 357899999999999988888777653
No 311
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.70 E-value=12 Score=48.27 Aligned_cols=41 Identities=24% Similarity=0.208 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhcCCC---cEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 181 QLEGLNFLVNSWRNDT---NVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 181 QlegvnwL~~~~~~~~---~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
|...+..|...+.++. ..|+....|.|||..|..|...+..
T Consensus 21 Qe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 21 QEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5556666666565543 4678999999999999999887754
No 312
>PLN03212 Transcription repressor MYB5; Provisional
Probab=76.57 E-value=2.8 Score=47.01 Aligned_cols=47 Identities=19% Similarity=0.294 Sum_probs=33.1
Q ss_pred CCCCceEeccccCCCCCCCCCCCCHHHHHHHHHHHhhccCcchHHhHhh
Q 000684 917 DPIKQFRVLSYLKPSNWSKGCGWNQFDDARLLLGIHYHGFGNWENIRLD 965 (1352)
Q Consensus 917 ~p~~~~~i~~~~k~~~w~~~~~W~~eeD~~LL~gI~kyGyG~We~Ir~D 965 (1352)
+|...=+-++..|+ +-. ...||++||..|+-.|.+||-++|..|..-
T Consensus 8 ~~~~~~~~pcc~K~-glK-Rg~WT~EEDe~L~~lV~kyG~~nW~~IAk~ 54 (249)
T PLN03212 8 KPVSKKTTPCCTKM-GMK-RGPWTVEEDEILVSFIKKEGEGRWRSLPKR 54 (249)
T ss_pred CCCCCCCCCCcccC-CCc-CCCCCHHHHHHHHHHHHHhCcccHHHHHHh
Confidence 34333333444443 222 256999999999999999999999999653
No 313
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=76.37 E-value=20 Score=46.85 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 198 VILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 198 ~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
.|+..+.|.|||..|-+|+..+..
T Consensus 43 YLF~GP~GtGKTt~AriLAk~LnC 66 (725)
T PRK07133 43 YLFSGPRGTGKTSVAKIFANALNC 66 (725)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcc
Confidence 478999999999999988877754
No 314
>PRK13342 recombination factor protein RarA; Reviewed
Probab=76.31 E-value=14 Score=45.44 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=18.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHH
Q 000684 196 TNVILADEMGLGKTVQSVSMLG 217 (1352)
Q Consensus 196 ~~~ILADEmGLGKTlqaIa~l~ 217 (1352)
.+.||.-+.|+|||..+-++..
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~ 58 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAG 58 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999988776654
No 315
>PRK09183 transposase/IS protein; Provisional
Probab=75.97 E-value=18 Score=41.59 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 181 QLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 181 QlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
++.++.|+ ..+.+++|.-+.|.|||..+.++...+..
T Consensus 92 ~L~~~~~i----~~~~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 92 SLRSLSFI----ERNENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred HHhcCCch----hcCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 34444553 47889999999999999998888655443
No 316
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=75.81 E-value=8.3 Score=48.11 Aligned_cols=131 Identities=13% Similarity=0.192 Sum_probs=67.8
Q ss_pred CCCHHHHHHHHHHHHhcCCchhHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccccCcccchh
Q 000684 817 NLSKRDATRFYRAVMKFGNQSQISLIARDAGGAVATAPQEVVVELFDILIDGCREAVEVGSPDPKGPPLLDFFGVSVKAN 896 (1352)
Q Consensus 817 ~~~~~~~~~f~~~~~k~G~~~~~~~I~~e~~gk~~~~~~e~~~~~~~~~~~~c~e~v~~~~~~~k~~~~~~~~~v~~~~e 896 (1352)
+||..|-..+.---.-.|.. .+..||.+++. +...+ .-+..|...-+.+.+.+-.++-...+..
T Consensus 255 ~WS~EE~E~L~AiA~A~~~~-~W~~IA~~Lgt-----~RS~y-QC~~kF~t~~~~L~ekeWsEEed~kL~a--------- 318 (939)
T KOG0049|consen 255 HWSNEEVEKLKALAEAPKFV-SWPMIALNLGT-----NRSSY-QCMEKFKTEVSQLSEKEWSEEEDTKLIA--------- 318 (939)
T ss_pred ccChHHHHHHHHHHhccccc-cHHHHHHHhCC-----CcchH-HHHHHHHHHHHHHHhhhcchhhhHHHHH---------
Confidence 48888888877666666763 58899999862 22223 3455555444443331111100110110
Q ss_pred HHHhhHHHH-HHHHHHhhcCCCCCC--ce--EeccccCCCCCCCCCCCCHHHHHHHHHHHhhccCcchHHhHhhh
Q 000684 897 DLINRVEEL-QLLAKRISRYEDPIK--QF--RVLSYLKPSNWSKGCGWNQFDDARLLLGIHYHGFGNWENIRLDE 966 (1352)
Q Consensus 897 ~vl~R~~~l-~lL~~ki~~~~~p~~--~~--~i~~~~k~~~w~~~~~W~~eeD~~LL~gI~kyGyG~We~Ir~D~ 966 (1352)
++.+...- .+=.++|-.|-.-.. ++ +..+..- |+-+. -.|+.+||.+|+|+|-+||=--|-.||...
T Consensus 319 -lV~~~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~Ld-Psikh-g~wt~~ED~~L~~AV~~Yg~kdw~k~R~~v 390 (939)
T KOG0049|consen 319 -LVKITSINSHIQWDKVVQYMPGRTRQQLITRFSHTLD-PSVKH-GRWTDQEDVLLVCAVSRYGAKDWAKVRQAV 390 (939)
T ss_pred -HHHHhhccCccchHHHHHhcCCcchhhhhhhheeccC-ccccC-CCCCCHHHHHHHHHHHHhCccchhhHHHhc
Confidence 11111110 111122222321111 21 1122222 33332 469999999999999999988899998753
No 317
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.20 E-value=19 Score=46.47 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhcCCC---cEEEEcCCCCcHHHHHHHHHHHHH
Q 000684 181 QLEGLNFLVNSWRNDT---NVILADEMGLGKTVQSVSMLGFLQ 220 (1352)
Q Consensus 181 QlegvnwL~~~~~~~~---~~ILADEmGLGKTlqaIa~l~~L~ 220 (1352)
|...+..|...+..+. ..|+.-+.|+|||..+.+++..+.
T Consensus 21 q~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 21 QEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4555555655555543 248999999999999999988775
No 318
>PRK11823 DNA repair protein RadA; Provisional
Probab=74.73 E-value=18 Score=44.97 Aligned_cols=63 Identities=17% Similarity=0.227 Sum_probs=42.3
Q ss_pred HHHHHHHHH-HhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHHHH
Q 000684 182 LEGLNFLVN-SWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRK 247 (1352)
Q Consensus 182 legvnwL~~-~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef~k 247 (1352)
..+++.++. -+..+.-.+|.-++|.|||..++.++..+... .+++|.|.-.....+......+
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~---g~~vlYvs~Ees~~qi~~ra~r 129 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA---GGKVLYVSGEESASQIKLRAER 129 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccccHHHHHHHHHH
Confidence 356677663 23344556889999999999998888766532 3577888876666655444443
No 319
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=74.56 E-value=21 Score=42.58 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=21.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 197 NVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 197 ~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
..||.-+.|+|||..+-+++..+..
T Consensus 38 ~~Ll~G~~G~GKt~~a~~la~~l~~ 62 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARIFAKALNC 62 (355)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4588999999999999888877764
No 320
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=74.51 E-value=21 Score=44.41 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=22.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHh
Q 000684 196 TNVILADEMGLGKTVQSVSMLGFLQNA 222 (1352)
Q Consensus 196 ~~~ILADEmGLGKTlqaIa~l~~L~~~ 222 (1352)
...+|.-+.|+|||..+-++...+...
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~ 157 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQN 157 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHh
Confidence 357899999999999888888777653
No 321
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=74.43 E-value=22 Score=44.12 Aligned_cols=26 Identities=19% Similarity=0.445 Sum_probs=21.6
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 196 TNVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 196 ~~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
..++++...|.|||.++..++.++..
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~ 121 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKK 121 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 45678899999999999888877764
No 322
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=74.43 E-value=36 Score=40.40 Aligned_cols=44 Identities=20% Similarity=0.222 Sum_probs=28.4
Q ss_pred CCcHHHHHHHHHHHHHhc----CCCcEEEEcCCCCcHHHHHHHHHHHH
Q 000684 176 KLRDYQLEGLNFLVNSWR----NDTNVILADEMGLGKTVQSVSMLGFL 219 (1352)
Q Consensus 176 ~Lr~yQlegvnwL~~~~~----~~~~~ILADEmGLGKTlqaIa~l~~L 219 (1352)
.-++..++.+.-++.... ...+++|.-..|+|||..+.++...+
T Consensus 28 vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 28 IGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred cCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh
Confidence 344555555544443321 23478999999999999887776544
No 323
>PRK06893 DNA replication initiation factor; Validated
Probab=74.20 E-value=22 Score=39.94 Aligned_cols=26 Identities=8% Similarity=-0.105 Sum_probs=20.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHHHh
Q 000684 197 NVILADEMGLGKTVQSVSMLGFLQNA 222 (1352)
Q Consensus 197 ~~ILADEmGLGKTlqaIa~l~~L~~~ 222 (1352)
..+|.-..|+|||-.+.++...+...
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~ 66 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLN 66 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35899999999998888877766543
No 324
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=74.11 E-value=19 Score=47.78 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=23.0
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 194 NDTNVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 194 ~~~~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
...|.||.-+.|.|||..+-++...+..
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4568999999999999998777766654
No 325
>CHL00095 clpC Clp protease ATP binding subunit
Probab=73.82 E-value=17 Score=48.75 Aligned_cols=43 Identities=28% Similarity=0.399 Sum_probs=28.4
Q ss_pred cHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 178 RDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 178 r~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
|+.+++-+--++.. ....|.||.-+.|.|||..+-++...+..
T Consensus 184 r~~ei~~~~~~L~r-~~~~n~lL~G~pGvGKTal~~~la~~i~~ 226 (821)
T CHL00095 184 REKEIERVIQILGR-RTKNNPILIGEPGVGKTAIAEGLAQRIVN 226 (821)
T ss_pred cHHHHHHHHHHHcc-cccCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 44454444333222 24558999999999999998777766543
No 326
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=73.20 E-value=16 Score=43.59 Aligned_cols=47 Identities=15% Similarity=0.231 Sum_probs=38.7
Q ss_pred CCcHHHHHHHHHHHHHhcCCC---cEEEEcCCCCcHHHHHHHHHHHHHHh
Q 000684 176 KLRDYQLEGLNFLVNSWRNDT---NVILADEMGLGKTVQSVSMLGFLQNA 222 (1352)
Q Consensus 176 ~Lr~yQlegvnwL~~~~~~~~---~~ILADEmGLGKTlqaIa~l~~L~~~ 222 (1352)
.++|+|...-..+...+.+++ .-+++-+.|+||+..|.+|..++.-.
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~ 51 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQ 51 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 467888888888888877655 45689999999999999999988754
No 327
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=73.03 E-value=7.7 Score=49.64 Aligned_cols=106 Identities=15% Similarity=0.224 Sum_probs=58.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEECh-hhH----HHHHHHHHHHcCCCeEEEEEcCchhHHHHHHHh
Q 000684 197 NVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPL-STL----SNWAKEFRKWLPTMNVIVYVGTRASREVCQQYE 271 (1352)
Q Consensus 197 ~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~-s~L----~nW~~Ef~kw~p~l~vvvy~G~~~~r~~i~~~e 271 (1352)
-.+..-.=--|||-.+.+.|..+..... .-.+++++|. ++. ..-..-+++|+|...+....|. .+ .+.
T Consensus 256 ~tVflVPRR~GKTwivv~iI~~ll~s~~-Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-----~I-~i~ 328 (738)
T PHA03368 256 ATVFLVPRRHGKTWFLVPLIALALATFR-GIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-----TI-SFS 328 (738)
T ss_pred ceEEEecccCCchhhHHHHHHHHHHhCC-CCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-----EE-EEE
Confidence 3455556678999987777765554321 2357888885 333 3344445678776444333331 11 112
Q ss_pred hhccccCCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCC
Q 000684 272 FYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKN 319 (1352)
Q Consensus 272 ~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN 319 (1352)
|.+ + .+.-+...|- .....++...+++||||||+-++.
T Consensus 329 f~n----G--~kstI~FaSa----rntNsiRGqtfDLLIVDEAqFIk~ 366 (738)
T PHA03368 329 FPD----G--SRSTIVFASS----HNTNGIRGQDFNLLFVDEANFIRP 366 (738)
T ss_pred ecC----C--CccEEEEEec----cCCCCccCCcccEEEEechhhCCH
Confidence 211 1 1122333311 233456667899999999999965
No 328
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=72.94 E-value=4.4 Score=46.32 Aligned_cols=50 Identities=22% Similarity=0.388 Sum_probs=38.5
Q ss_pred CCCCCceEeccccCCCCCCCCCCCCHHHHHHHHHHHhhccCcchHHhHhhhh
Q 000684 916 EDPIKQFRVLSYLKPSNWSKGCGWNQFDDARLLLGIHYHGFGNWENIRLDER 967 (1352)
Q Consensus 916 ~~p~~~~~i~~~~k~~~w~~~~~W~~eeD~~LL~gI~kyGyG~We~Ir~D~~ 967 (1352)
-.|.+.++|...-..+-.. -.|+..|+..|+-++.-.|+|||+.|.+.+-
T Consensus 45 H~pyH~YRiietnsypI~~--e~WgadEEllli~~~~TlGlGNW~dIadyiG 94 (432)
T COG5114 45 HSPYHGYRIIETNSYPIGE--EGWGADEELLLIECLDTLGLGNWEDIADYIG 94 (432)
T ss_pred cCCCCCeeEeeccCccccC--CCcCchHHHHHHHHHHhcCCCcHHHHHHHHh
Confidence 3677778885432222222 4699999999999999999999999999875
No 329
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=72.74 E-value=24 Score=44.00 Aligned_cols=45 Identities=11% Similarity=0.048 Sum_probs=28.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHH
Q 000684 196 TNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNW 241 (1352)
Q Consensus 196 ~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW 241 (1352)
...+|.-+.|+|||-.+-++..++..... ...++.|.+...+...
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~-~~~v~yv~~~~f~~~~ 186 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFS-DLKVSYMSGDEFARKA 186 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEEHHHHHHHH
Confidence 35789999999999888777777654322 2334554444444333
No 330
>PRK05642 DNA replication initiation factor; Validated
Probab=72.68 E-value=18 Score=40.79 Aligned_cols=37 Identities=11% Similarity=0.388 Sum_probs=25.7
Q ss_pred cceEecchhcccCCcc---hHHHHHHHcccc-cCeEEEecc
Q 000684 306 WNYLMVDEAHRLKNSE---AQLYTTLSEFST-KNKLLITGT 342 (1352)
Q Consensus 306 w~~lIVDEAHrlKN~~---Skl~~aL~~l~~-~~rlLLTGT 342 (1352)
.++||||+.|.+.+.. ..++..+..+.. ..++++|+|
T Consensus 98 ~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 98 YELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred CCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 3689999999886542 346666665543 466888887
No 331
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=72.63 E-value=21 Score=44.87 Aligned_cols=67 Identities=21% Similarity=0.191 Sum_probs=49.0
Q ss_pred CCcHHHHHHHHHHHHHhc--------CCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHHHH
Q 000684 176 KLRDYQLEGLNFLVNSWR--------NDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRK 247 (1352)
Q Consensus 176 ~Lr~yQlegvnwL~~~~~--------~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef~k 247 (1352)
...+...+.+.|++.... ...+++|+...|+|||+.|-++... ...+|+-|-..+++..|.-|.++
T Consensus 249 ~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~------~~~~fi~v~~~~l~sk~vGesek 322 (494)
T COG0464 249 EAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALE------SRSRFISVKGSELLSKWVGESEK 322 (494)
T ss_pred HHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhh------CCCeEEEeeCHHHhccccchHHH
Confidence 466677788888764332 3447899999999999998777642 23577777777888989888765
Q ss_pred H
Q 000684 248 W 248 (1352)
Q Consensus 248 w 248 (1352)
-
T Consensus 323 ~ 323 (494)
T COG0464 323 N 323 (494)
T ss_pred H
Confidence 3
No 332
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=72.19 E-value=18 Score=47.45 Aligned_cols=97 Identities=18% Similarity=0.226 Sum_probs=69.3
Q ss_pred hcchhHHHHHHHHHhhhcCCeEEEEecchhHHH----HHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEE
Q 000684 491 SSGKLVILDKLLVRLHETKHRVLIFSQMVRMLD----ILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFL 566 (1352)
Q Consensus 491 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ld----iL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfL 566 (1352)
.|||..+..-.+-.....|.+++|.+.....+. .+..++...|+++..++|+++..+|...+.....+..+ ++
T Consensus 292 GSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~---Iv 368 (681)
T PRK10917 292 GSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEAD---IV 368 (681)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCC---EE
Confidence 588887654443334457889999998876655 44555555689999999999999999999998874333 67
Q ss_pred eecCC-CccCCCCCccCEEEEcCCC
Q 000684 567 LSTRA-GGLGINLATADTVIIFDSD 590 (1352)
Q Consensus 567 LSTrA-gg~GINL~~AdtVIi~Dsd 590 (1352)
+.|.+ ....+.+.....||+=..+
T Consensus 369 VgT~~ll~~~v~~~~l~lvVIDE~H 393 (681)
T PRK10917 369 IGTHALIQDDVEFHNLGLVIIDEQH 393 (681)
T ss_pred EchHHHhcccchhcccceEEEechh
Confidence 77764 3446677788887774443
No 333
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=72.17 E-value=24 Score=48.37 Aligned_cols=59 Identities=14% Similarity=0.039 Sum_probs=42.4
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhH
Q 000684 174 GGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTL 238 (1352)
Q Consensus 174 ~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L 238 (1352)
+..|.+-|.+++..+. ..+.-++|.---|+|||.+.-++...+... ...++.++|+..-
T Consensus 379 ~~~Ls~eQ~~Av~~i~---~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~---G~~V~g~ApTgkA 437 (1102)
T PRK13826 379 HARLSDEQKTAIEHVA---GPARIAAVVGRAGAGKTTMMKAAREAWEAA---GYRVVGGALAGKA 437 (1102)
T ss_pred CCCCCHHHHHHHHHHh---ccCCeEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEcCcHHH
Confidence 3579999999998764 245557888899999998766665544332 2467888887544
No 334
>PRK04132 replication factor C small subunit; Provisional
Probab=71.81 E-value=9.3 Score=50.81 Aligned_cols=49 Identities=18% Similarity=0.370 Sum_probs=31.9
Q ss_pred CcceEecchhcccCC-cchHHHHHHHcccccCeEEEeccCCCCCHHHHHH
Q 000684 305 KWNYLMVDEAHRLKN-SEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWA 353 (1352)
Q Consensus 305 ~w~~lIVDEAHrlKN-~~Skl~~aL~~l~~~~rlLLTGTPlqNnl~EL~s 353 (1352)
++.++||||||+|-. ....+.+.+.......+++|+.++...-+.-|-|
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrS 679 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 679 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhh
Confidence 478999999999942 2223444555556777888888776544444443
No 335
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=71.70 E-value=2.8 Score=47.61 Aligned_cols=32 Identities=22% Similarity=0.200 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHHhhccCcchHHhHhhhhcc
Q 000684 938 GWNQFDDARLLLGIHYHGFGNWENIRLDERLG 969 (1352)
Q Consensus 938 ~W~~eeD~~LL~gI~kyGyG~We~Ir~D~~L~ 969 (1352)
.|+.|||..|.--|-+||-|+|..|-.+.-|+
T Consensus 11 pWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~ 42 (238)
T KOG0048|consen 11 PWTQEEDLTQIRSIKSFGKHNGTALPKLAGLR 42 (238)
T ss_pred CCChHHHHHHHHHHHHhCCCCcchhhhhcCCC
Confidence 69999999999999999999999999998865
No 336
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=71.46 E-value=19 Score=41.02 Aligned_cols=41 Identities=29% Similarity=0.374 Sum_probs=25.6
Q ss_pred CCC-cEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhH
Q 000684 194 NDT-NVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTL 238 (1352)
Q Consensus 194 ~~~-~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L 238 (1352)
.+. -+.+.-+.|+|||+..=+++..+.. ..-.+|+.|..++
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~----d~~~~v~i~~~~~ 90 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNE----DQVAVVVIDKPTL 90 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCC----CceEEEEecCcch
Confidence 444 4567889999999987755444331 2234467776544
No 337
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=71.43 E-value=12 Score=29.68 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHHhcCCchhHHHHHHHhCCCCCCCcHHHHHHHHH
Q 000684 817 NLSKRDATRFYRAVMKFGNQSQISLIARDAGGAVATAPQEVVVELFD 863 (1352)
Q Consensus 817 ~~~~~~~~~f~~~~~k~G~~~~~~~I~~e~~gk~~~~~~e~~~~~~~ 863 (1352)
.||..|...|++++.+||. .+...||..+.+ ++...++..+.
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~-~~w~~Ia~~~~~----rs~~~~~~~~~ 42 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK-NNWEKIAKELPG----RTPKQCRERWR 42 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc-CCHHHHHhHcCC----CCHHHHHHHHH
Confidence 3999999999999999995 468999988864 34444444443
No 338
>PRK11054 helD DNA helicase IV; Provisional
Probab=70.74 E-value=9.3 Score=49.98 Aligned_cols=64 Identities=20% Similarity=0.181 Sum_probs=47.8
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCC-CCcEEEEEChhhHHHHHHH
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQI-PGPFLVVVPLSTLSNWAKE 244 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~-~gp~LIVvP~s~L~nW~~E 244 (1352)
..|.+.|.++|..- . .++++....|+|||.+.++-+.+|...... ...+|+++.+....+..++
T Consensus 195 ~~L~~~Q~~av~~~-----~-~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~e 259 (684)
T PRK11054 195 SPLNPSQARAVVNG-----E-DSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDE 259 (684)
T ss_pred CCCCHHHHHHHhCC-----C-CCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHH
Confidence 46999999999632 2 345555668999999999999998865432 3468999998877665554
No 339
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=70.73 E-value=16 Score=45.42 Aligned_cols=35 Identities=26% Similarity=0.262 Sum_probs=25.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEE
Q 000684 196 TNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVV 233 (1352)
Q Consensus 196 ~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVv 233 (1352)
+..+|..+.|+|||-.+-++...+... ..+++.|.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~---~~~v~yi~ 176 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES---GGKILYVR 176 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEee
Confidence 457899999999999988888877653 23444444
No 340
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=70.34 E-value=38 Score=41.08 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=23.1
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 194 NDTNVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 194 ~~~~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
.+...+|.-.+|.|||.++..++..+..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~ 163 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVM 163 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5667889999999999998888876643
No 341
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=70.02 E-value=31 Score=43.04 Aligned_cols=41 Identities=22% Similarity=0.169 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhcCCC---cEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 181 QLEGLNFLVNSWRNDT---NVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 181 QlegvnwL~~~~~~~~---~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
|...+.+|...+..+. ..|+.-+.|+|||..|.+++..+..
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 4455666665555543 4578999999999999999888764
No 342
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=69.68 E-value=25 Score=49.83 Aligned_cols=62 Identities=16% Similarity=0.182 Sum_probs=42.7
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcC-CCCcEEEEEChhhH
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQ-IPGPFLVVVPLSTL 238 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~-~~gp~LIVvP~s~L 238 (1352)
..|.+-|.+++.-++.. .+.-++|.--.|+|||.+.-+++..+..... ....++.++|+.--
T Consensus 834 ~~Lt~~Qr~Av~~iLts--~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkA 896 (1623)
T PRK14712 834 EKLTSGQRAATRMILET--SDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRA 896 (1623)
T ss_pred cccCHHHHHHHHHHHhC--CCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHH
Confidence 37999999999877642 3456888899999999886555554433211 12347778997654
No 343
>PF01393 Chromo_shadow: Chromo shadow domain Web page maintained by Rein Aasland; InterPro: IPR008251 Chromo shadow domain is distantly related to chromo domain. It is always found in association with a chromo domain. The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain [], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1); and mammalian modifier 1 and modifier 2. The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigenand and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1.; GO: 0005634 nucleus; PDB: 3Q6S_C 2FMM_B 3P7J_B 1E0B_B 3I3C_A 1DZ1_B 1S4Z_A 3KUP_D.
Probab=69.38 E-value=4.7 Score=35.48 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=31.2
Q ss_pred CcccceeeeeccCCCCCCcceeEEEecCCCCcccccccccccc--hhHHHHHHHHHHH
Q 000684 85 SQVERIIADRISKDSSGNVTQEYLVKWKGLSYAEATWEKDEII--DFAQDAIDEYKAR 140 (1352)
Q Consensus 85 ~~veRIi~~r~~~~~~~~~~~~YLVKW~gL~Y~~~TWE~~~~i--~~~~~~i~~y~~r 140 (1352)
+.+|+||+... .. +...|||||++.+- .++.....+ ...+..|+-|+++
T Consensus 3 l~~E~Ivg~~d---~~--G~l~~likwk~~~~--~~~v~~~~~~~k~Pq~vI~FYE~~ 53 (58)
T PF01393_consen 3 LEWEKIVGATD---TN--GELMFLIKWKNSGE--KDLVPSKEANEKCPQKVIKFYESH 53 (58)
T ss_dssp -TEEEEEEEEE---CT--SSEEEEEEETTSSS--EEEEEHHHHHHHSHHHHHHHHHHT
T ss_pred CChHHHheeec---CC--CcEEEEEEECCCCc--eEEeeHHHHHHHCcHHHHHHHHHH
Confidence 46899998652 22 35799999999774 333433322 2456778888764
No 344
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=69.22 E-value=41 Score=43.36 Aligned_cols=35 Identities=11% Similarity=0.117 Sum_probs=19.8
Q ss_pred hHHHHhhhHHhhhhccccCChHHHHHHHHHHhhhcc
Q 000684 1185 KQDRMTMRLWNYVSTFSNLSGEKLHQIYSKLKQERQ 1220 (1352)
Q Consensus 1185 ~~~~~~~~lW~~~s~f~~~~~~~l~~my~~~~~~~~ 1220 (1352)
+...+.+-+|.-.+-+-+ ....|+++-.||+.-+.
T Consensus 475 kA~e~~kk~~ke~ta~qe-~qael~k~e~Ki~~l~a 509 (1102)
T KOG1924|consen 475 KAAELEKKFDKELTARQE-AQAELQKHEEKIKLLEA 509 (1102)
T ss_pred HHHHHHHHHHHHHhHHHH-HHHHHHHhhhhcccCch
Confidence 445566666654444422 34567777788875433
No 345
>PLN03091 hypothetical protein; Provisional
Probab=69.05 E-value=4.9 Score=48.55 Aligned_cols=29 Identities=28% Similarity=0.531 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHHHhhccCcchHHhHhh
Q 000684 937 CGWNQFDDARLLLGIHYHGFGNWENIRLD 965 (1352)
Q Consensus 937 ~~W~~eeD~~LL~gI~kyGyG~We~Ir~D 965 (1352)
..|+++||..|+..|.+||-++|..|...
T Consensus 15 g~WTpEEDe~L~~~V~kyG~~nWs~IAk~ 43 (459)
T PLN03091 15 GLWSPEEDEKLLRHITKYGHGCWSSVPKQ 43 (459)
T ss_pred CCCCHHHHHHHHHHHHHhCcCCHHHHhhh
Confidence 46999999999999999999999999754
No 346
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=68.89 E-value=14 Score=29.78 Aligned_cols=43 Identities=19% Similarity=0.303 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHhcCCchhHHHHHHHhCCCCCCCcHHHHHHHHHH
Q 000684 817 NLSKRDATRFYRAVMKFGNQSQISLIARDAGGAVATAPQEVVVELFDI 864 (1352)
Q Consensus 817 ~~~~~~~~~f~~~~~k~G~~~~~~~I~~e~~gk~~~~~~e~~~~~~~~ 864 (1352)
.||..|...|+.++..||. .+.+.|+..+.+ ++...+...+..
T Consensus 3 ~Wt~~E~~~l~~~~~~~g~-~~w~~Ia~~~~~----rt~~~~~~~~~~ 45 (49)
T smart00717 3 EWTEEEDELLIELVKKYGK-NNWEKIAKELPG----RTAEQCRERWNN 45 (49)
T ss_pred CCCHHHHHHHHHHHHHHCc-CCHHHHHHHcCC----CCHHHHHHHHHH
Confidence 5999999999999999995 368999988753 344444444443
No 347
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=68.84 E-value=22 Score=46.49 Aligned_cols=66 Identities=15% Similarity=0.132 Sum_probs=45.3
Q ss_pred CcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcC-CCCcEEEEEChh-hHHHHHHHHHHH
Q 000684 177 LRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQ-IPGPFLVVVPLS-TLSNWAKEFRKW 248 (1352)
Q Consensus 177 Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~-~~gp~LIVvP~s-~L~nW~~Ef~kw 248 (1352)
|.|-|.+++++ ...++++..-.|+|||.+.+.-+.++....+ ....+|+|+.+. .-..-.+.+.+.
T Consensus 2 Ln~~Q~~av~~------~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~ 69 (664)
T TIGR01074 2 LNPQQQEAVEY------VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKT 69 (664)
T ss_pred CCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 77889998864 2356777778899999999999988886433 334477776654 334455555443
No 348
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=68.62 E-value=22 Score=47.94 Aligned_cols=40 Identities=23% Similarity=0.246 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhc--CCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 182 LEGLNFLVNSWR--NDTNVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 182 legvnwL~~~~~--~~~~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
..-+..++..++ ...|.||.-+.|.|||..+-+++..+..
T Consensus 179 ~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 179 DEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred HHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 334666665443 3468899999999999988877766543
No 349
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=68.51 E-value=33 Score=41.96 Aligned_cols=41 Identities=17% Similarity=0.459 Sum_probs=28.1
Q ss_pred CcceEecchhcccCCcc---hHHHHHHHcccc-cCeEEEec--cCCC
Q 000684 305 KWNYLMVDEAHRLKNSE---AQLYTTLSEFST-KNKLLITG--TPLQ 345 (1352)
Q Consensus 305 ~w~~lIVDEAHrlKN~~---Skl~~aL~~l~~-~~rlLLTG--TPlq 345 (1352)
.-++++||..+.+.+.. -.++..+..+.. ...|+||+ +|-+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~ 221 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKE 221 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchh
Confidence 45889999999997763 345555555543 34799998 6643
No 350
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=68.15 E-value=43 Score=40.40 Aligned_cols=38 Identities=24% Similarity=0.251 Sum_probs=26.2
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhH
Q 000684 195 DTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTL 238 (1352)
Q Consensus 195 ~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L 238 (1352)
..+++|.-+.|+|||..+-++...+ ..+++-|....++
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l------~~~~~~v~~~~l~ 193 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHET------NATFIRVVGSELV 193 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhC------CCCEEecchHHHH
Confidence 4578999999999999887776543 2355655544433
No 351
>PRK10865 protein disaggregation chaperone; Provisional
Probab=67.98 E-value=25 Score=47.46 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=27.5
Q ss_pred HHHHHHHHh--cCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q 000684 184 GLNFLVNSW--RNDTNVILADEMGLGKTVQSVSMLGFLQ 220 (1352)
Q Consensus 184 gvnwL~~~~--~~~~~~ILADEmGLGKTlqaIa~l~~L~ 220 (1352)
-+..++..+ ....|.||.-+.|.|||..+-++...+.
T Consensus 186 ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 186 EIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred HHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhh
Confidence 366666533 3456899999999999999877776654
No 352
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=67.93 E-value=41 Score=43.28 Aligned_cols=99 Identities=15% Similarity=0.267 Sum_probs=56.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHHHHHcCCCeEEEEEcCchhHHHHHHHhhhccc
Q 000684 197 NVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRKWLPTMNVIVYVGTRASREVCQQYEFYNDK 276 (1352)
Q Consensus 197 ~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef~kw~p~l~vvvy~G~~~~r~~i~~~e~~~~~ 276 (1352)
..+|.-..|+|||-.+.++..++..... ...++.|.-...+..+...+.. +
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~-g~~V~Yitaeef~~el~~al~~-----------~----------------- 366 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYP-GTRVRYVSSEEFTNEFINSIRD-----------G----------------- 366 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCC-CCeEEEeeHHHHHHHHHHHHHh-----------c-----------------
Confidence 3788999999999988888877764321 2234444433333333322211 0
Q ss_pred cCCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCCcch---HHHHHHHcccc-cCeEEEecc
Q 000684 277 KVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEA---QLYTTLSEFST-KNKLLITGT 342 (1352)
Q Consensus 277 ~~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN~~S---kl~~aL~~l~~-~~rlLLTGT 342 (1352)
.++.+. ..+. ..++||||+.|.+.+... .++..+..+.. ...++||+.
T Consensus 367 -------------~~~~f~---~~y~--~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd 418 (617)
T PRK14086 367 -------------KGDSFR---RRYR--EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSD 418 (617)
T ss_pred -------------cHHHHH---HHhh--cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecC
Confidence 011111 1121 358999999999977543 35555555543 345777765
No 353
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=67.63 E-value=30 Score=49.62 Aligned_cols=63 Identities=16% Similarity=0.172 Sum_probs=43.7
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCC-CCcEEEEEChhhHH
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQI-PGPFLVVVPLSTLS 239 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~-~gp~LIVvP~s~L~ 239 (1352)
..|.+-|.+++..++.. .+.-++|.--.|+|||.+.-+++..+...... ...++.++|+.--.
T Consensus 966 ~~Lt~~Q~~Av~~il~s--~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAA 1029 (1747)
T PRK13709 966 EGLTSGQRAATRMILES--TDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAV 1029 (1747)
T ss_pred CCCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHH
Confidence 46899999999988742 34567888899999998866666554432222 23467789976543
No 354
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=67.57 E-value=9.4 Score=48.51 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=41.9
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHH-HHHHHHHH
Q 000684 174 GGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSV-SMLGFLQN 221 (1352)
Q Consensus 174 ~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaI-a~l~~L~~ 221 (1352)
..++++.|++-++-+.+....|.=||+-..||+|||+..| +.|.||..
T Consensus 13 Py~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~ 61 (821)
T KOG1133|consen 13 PYTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRD 61 (821)
T ss_pred CCCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999854 56777754
No 355
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=67.48 E-value=10 Score=42.39 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHH
Q 000684 196 TNVILADEMGLGKTVQSVSMLGFLQ 220 (1352)
Q Consensus 196 ~~~ILADEmGLGKTlqaIa~l~~L~ 220 (1352)
.+.|++...|.|||..+.++...|.
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHHh
Confidence 4789999999999998887776664
No 356
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.84 E-value=56 Score=42.43 Aligned_cols=40 Identities=18% Similarity=0.153 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhcCCC---cEEEEcCCCCcHHHHHHHHHHHHH
Q 000684 181 QLEGLNFLVNSWRNDT---NVILADEMGLGKTVQSVSMLGFLQ 220 (1352)
Q Consensus 181 QlegvnwL~~~~~~~~---~~ILADEmGLGKTlqaIa~l~~L~ 220 (1352)
|...+..|...+.++. ..|+..+.|.|||..+..+...+.
T Consensus 22 q~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 22 QEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3344444444444442 358999999999997777776664
No 357
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=65.44 E-value=31 Score=39.57 Aligned_cols=66 Identities=26% Similarity=0.313 Sum_probs=46.8
Q ss_pred CcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHH
Q 000684 177 LRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEF 245 (1352)
Q Consensus 177 Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef 245 (1352)
+.-.++..+.-+...+.++.|.+|.-..|.|||..++|+...+... ..+++++.-..++.++...+
T Consensus 87 ~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~---g~sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 87 IDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKA---GISVLFITAPDLLSKLKAAF 152 (254)
T ss_pred hhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEEHHHHHHHHHHHH
Confidence 4445566666556566688999999999999999999999888832 23566665555555554444
No 358
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=65.43 E-value=58 Score=36.41 Aligned_cols=38 Identities=16% Similarity=0.427 Sum_probs=26.5
Q ss_pred CcceEecchhcccCCcc---hHHHHHHHcc-cccCeEEEecc
Q 000684 305 KWNYLMVDEAHRLKNSE---AQLYTTLSEF-STKNKLLITGT 342 (1352)
Q Consensus 305 ~w~~lIVDEAHrlKN~~---Skl~~aL~~l-~~~~rlLLTGT 342 (1352)
..++||||..|.+.+.. ..++..+..+ ....++++|+-
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~ 138 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSD 138 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEES
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeC
Confidence 57899999999998764 2445555554 34567888873
No 359
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=65.14 E-value=2.2 Score=37.04 Aligned_cols=29 Identities=14% Similarity=0.340 Sum_probs=24.2
Q ss_pred CCCCCcceEEEEecCCccccccccchhhh
Q 000684 8 EPDWNEMEFLIKWKGQSHLHCQWKSFAEL 36 (1352)
Q Consensus 8 ~~~~~~~eyLVKWkg~SylH~tW~s~~~L 36 (1352)
+...+..+|+|-|.|++-.+..|++.+.|
T Consensus 25 r~~~~~~~YyVHY~g~nkR~DeWV~~~~i 53 (55)
T PF11717_consen 25 REKNGEPEYYVHYQGWNKRLDEWVPESRI 53 (55)
T ss_dssp EECTTCEEEEEEETTSTGCC-EEEETTTE
T ss_pred EecCCCEEEEEEcCCCCCCceeeecHHHc
Confidence 34556799999999999999999998876
No 360
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=65.12 E-value=12 Score=47.50 Aligned_cols=110 Identities=21% Similarity=0.256 Sum_probs=63.0
Q ss_pred hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhh-----HHHHHHHHHHHcCCCeEEEEEcCchhHHH
Q 000684 192 WRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLST-----LSNWAKEFRKWLPTMNVIVYVGTRASREV 266 (1352)
Q Consensus 192 ~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~-----L~nW~~Ef~kw~p~l~vvvy~G~~~~r~~ 266 (1352)
+.+.-.+.|. .=-=|||-..+++|+.+...-. .=.+..|+...- +......+.+|+|.-+++.-.|+.-.
T Consensus 200 FKQkaTVFLV-PRRHGKTWf~VpiIsllL~s~~-gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~tI~--- 274 (668)
T PHA03372 200 FKQKATVFLV-PRRHGKTWFIIPIISFLLKNII-GISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNVIS--- 274 (668)
T ss_pred hhccceEEEe-cccCCceehHHHHHHHHHHhhc-CceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcEEE---
Confidence 3444455554 4577999998888888776322 124677777533 34455667899998766433222100
Q ss_pred HHHHhhhccccCCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCCc
Q 000684 267 CQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNS 320 (1352)
Q Consensus 267 i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN~ 320 (1352)
+. . ...+.-++..| ....+.++.-.|++|+|||||-++-.
T Consensus 275 ------~s-~---pg~Kst~~fas----c~n~NsiRGQ~fnll~VDEA~FI~~~ 314 (668)
T PHA03372 275 ------ID-H---RGAKSTALFAS----CYNTNSIRGQNFHLLLVDEAHFIKKD 314 (668)
T ss_pred ------Ee-c---CCCcceeeehh----hccCccccCCCCCEEEEehhhccCHH
Confidence 00 0 01121222222 12234667778999999999999643
No 361
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=64.82 E-value=27 Score=39.96 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=17.8
Q ss_pred cCCCcEEEEcCCCCcHHHHHHHHH
Q 000684 193 RNDTNVILADEMGLGKTVQSVSML 216 (1352)
Q Consensus 193 ~~~~~~ILADEmGLGKTlqaIa~l 216 (1352)
..|..++|.-+.|.|||..+-.++
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~ 37 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIA 37 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Confidence 467788888899999996443333
No 362
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=64.76 E-value=16 Score=42.03 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=37.0
Q ss_pred cHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEE
Q 000684 178 RDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVV 233 (1352)
Q Consensus 178 r~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVv 233 (1352)
.|+....+..++.....+.+++|..+.|+|||..|-++...+ ..|++.|+
T Consensus 4 t~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l------g~~~~~i~ 53 (262)
T TIGR02640 4 TDAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR------DRPVMLIN 53 (262)
T ss_pred CHHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh------CCCEEEEe
Confidence 355566666666666788999999999999999887776422 35777664
No 363
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=64.51 E-value=63 Score=41.01 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=21.1
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 194 NDTNVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 194 ~~~~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
.+...+|.-..|.|||..+..++..+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~ 376 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAA 376 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4556667888999999988777766544
No 364
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=64.50 E-value=46 Score=39.43 Aligned_cols=42 Identities=14% Similarity=0.315 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcCCC---cEEEEcCCCCcHHHHHHHHHHHHHHh
Q 000684 181 QLEGLNFLVNSWRNDT---NVILADEMGLGKTVQSVSMLGFLQNA 222 (1352)
Q Consensus 181 QlegvnwL~~~~~~~~---~~ILADEmGLGKTlqaIa~l~~L~~~ 222 (1352)
|-+++..|...+.+++ .-++..+.|.||+..|.+|+.++...
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~ 53 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQ 53 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 5566667776666654 56889999999999999999988754
No 365
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=63.79 E-value=76 Score=38.35 Aligned_cols=146 Identities=16% Similarity=0.173 Sum_probs=76.4
Q ss_pred CCCCcHHHHHHHHHHHHHhcC--CCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHHHHHcCC
Q 000684 174 GGKLRDYQLEGLNFLVNSWRN--DTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRKWLPT 251 (1352)
Q Consensus 174 ~~~Lr~yQlegvnwL~~~~~~--~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef~kw~p~ 251 (1352)
....|.+|+..+.-++..-.. ...++|....|+|||..+-.++..+ +-|+..|++.. +..|.--+.+.+-.
T Consensus 7 ~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~------n~~~vw~n~~e-cft~~~lle~IL~~ 79 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL------NLENVWLNCVE-CFTYAILLEKILNK 79 (438)
T ss_pred CccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc------CCcceeeehHH-hccHHHHHHHHHHH
Confidence 345789999999887743221 1123888999999999888777655 34566676653 23333333332211
Q ss_pred CeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhhc-cCcceEecchhcccCCcchHHHHHHHc
Q 000684 252 MNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSK-IKWNYLMVDEAHRLKNSEAQLYTTLSE 330 (1352)
Q Consensus 252 l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~-i~w~~lIVDEAHrlKN~~Skl~~aL~~ 330 (1352)
....-+.|....-. .+. +.-+| ..+.. .....+ -.--+||+|-|..+...++-+.+.+..
T Consensus 80 ~~~~d~dg~~~~~~----~en-----------~~d~i---~~l~q-~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~ 140 (438)
T KOG2543|consen 80 SQLADKDGDKVEGD----AEN-----------FSDFI---YLLVQ-WPAATNRDQKVFLILDNADALRDMDAILLQCLFR 140 (438)
T ss_pred hccCCCchhhhhhH----HHH-----------HHHHH---HHHHh-hHHhhccCceEEEEEcCHHhhhccchHHHHHHHH
Confidence 11111111111100 000 00000 00111 011111 123479999999999888877777766
Q ss_pred c-----cccCeEEEeccCCC
Q 000684 331 F-----STKNKLLITGTPLQ 345 (1352)
Q Consensus 331 l-----~~~~rlLLTGTPlq 345 (1352)
+ ....+++++.++..
T Consensus 141 L~el~~~~~i~iils~~~~e 160 (438)
T KOG2543|consen 141 LYELLNEPTIVIILSAPSCE 160 (438)
T ss_pred HHHHhCCCceEEEEeccccH
Confidence 5 23456777777643
No 366
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=63.70 E-value=30 Score=41.51 Aligned_cols=46 Identities=20% Similarity=0.150 Sum_probs=33.5
Q ss_pred CcHHHHHHHHHHHHHhcCCC-cEEEEcCCCCcHHHHHHHHHHHHHHh
Q 000684 177 LRDYQLEGLNFLVNSWRNDT-NVILADEMGLGKTVQSVSMLGFLQNA 222 (1352)
Q Consensus 177 Lr~yQlegvnwL~~~~~~~~-~~ILADEmGLGKTlqaIa~l~~L~~~ 222 (1352)
++|+|...-+-|...-.+-. ..++....|.|||..|..|...|.-.
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~ 48 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCE 48 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 46777777777766422222 44678999999999999999888754
No 367
>CHL00095 clpC Clp protease ATP binding subunit
Probab=63.67 E-value=2.7e+02 Score=37.67 Aligned_cols=24 Identities=17% Similarity=0.418 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 198 VILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 198 ~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
.+++..+|.|||..|-++...++.
T Consensus 542 ~lf~Gp~GvGKt~lA~~LA~~l~~ 565 (821)
T CHL00095 542 FLFSGPTGVGKTELTKALASYFFG 565 (821)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Confidence 589999999999998888877653
No 368
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=63.63 E-value=62 Score=34.35 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHh
Q 000684 198 VILADEMGLGKTVQSVSMLGFLQNA 222 (1352)
Q Consensus 198 ~ILADEmGLGKTlqaIa~l~~L~~~ 222 (1352)
.++....|.|||..+..++..+...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 4677899999999998888777653
No 369
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=63.59 E-value=12 Score=40.47 Aligned_cols=39 Identities=26% Similarity=0.258 Sum_probs=28.2
Q ss_pred cCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEC
Q 000684 193 RNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVP 234 (1352)
Q Consensus 193 ~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP 234 (1352)
.++.|.+|...+|+|||..|++++..+...+ .+++++.-
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g---~~v~f~~~ 83 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKG---YSVLFITA 83 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT-----EEEEEH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCC---cceeEeec
Confidence 4678899999999999999999998887632 35566643
No 370
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=63.35 E-value=35 Score=42.13 Aligned_cols=183 Identities=16% Similarity=0.206 Sum_probs=98.4
Q ss_pred hhcchhHHHHHHHHHhhhcCCeEEEEecch---hHHHHHHHHHHhcCCcEEEEeCCC-CHHHHHHHHHHhcCCCCCCcEE
Q 000684 490 LSSGKLVILDKLLVRLHETKHRVLIFSQMV---RMLDILAEYMSYKGFQFQRLDGST-KAELRHQAMDHFNAPGSEDFCF 565 (1352)
Q Consensus 490 ~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~---~~ldiL~d~L~~~g~~~~rldGs~-~~~eR~~~Id~Fn~~~s~~~vf 565 (1352)
..+||-..+.+|...+...|.+|+|.+--+ ...+.|..+-...++++....+.. +..-....++.+...+.+ ++
T Consensus 109 ~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~~~D--vV 186 (429)
T TIGR01425 109 QGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKENFD--II 186 (429)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhCCCC--EE
Confidence 468999999999988888899999887643 356667777777788876544333 333344566666542222 34
Q ss_pred EeecCCCccCCCCCccCEEEEcCCCCChhhHHHHhhhhcccCCCceEEEEEEecCCCHH---HHHHHHHHHHHhhHHHHH
Q 000684 566 LLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVE---EDILERAKKKMVLDHLVI 642 (1352)
Q Consensus 566 LLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQkk~V~VyrLvt~~TiE---E~Il~ra~~K~~L~~~vi 642 (1352)
|+.|. |... +-....+.+....+.-+ +..++ ||...+.- ..+.+.......++..|+
T Consensus 187 iIDTa-Gr~~----------------~d~~lm~El~~i~~~~~--p~e~l-LVlda~~Gq~a~~~a~~F~~~~~~~g~Il 246 (429)
T TIGR01425 187 IVDTS-GRHK----------------QEDSLFEEMLQVAEAIQ--PDNII-FVMDGSIGQAAEAQAKAFKDSVDVGSVII 246 (429)
T ss_pred EEECC-CCCc----------------chHHHHHHHHHHhhhcC--CcEEE-EEeccccChhHHHHHHHHHhccCCcEEEE
Confidence 44443 2111 11233455555554443 23333 44433322 333333344456777777
Q ss_pred ccccccchhhhhhh------------cchhhHHHHHhcchHhhhcccCccHHHhhhccCCCHHHHHHhhhhhh
Q 000684 643 QKLNAEGSWRRKKQ------------RKGNELSAILRFGAEELFKEDRNDEESKKRLLGMDIDEILERAEKVE 703 (1352)
Q Consensus 643 ~~~~~~g~~~~~~~------------~~~~el~~il~~ga~~l~~~~~~~~~~~~~~~~~did~il~~~~~~~ 703 (1352)
.+++...+...--+ ..++.++++..|-.+.+.. .-+-.-||..++++++...
T Consensus 247 TKlD~~argG~aLs~~~~t~~PI~fig~Ge~v~Dle~f~p~~~~~---------rilgmgDi~~L~ek~~~~~ 310 (429)
T TIGR01425 247 TKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEIFKTQPFIS---------KLLGMGDIEGLIDKVQDLK 310 (429)
T ss_pred ECccCCCCccHHhhhHHHHCCCeEEEcCCCChhhcCcCChHHHHH---------HHhcCCCcHHHHHHHHHhh
Confidence 77664322110000 1124444444444433322 2344567888888887653
No 371
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=62.60 E-value=6.6 Score=51.95 Aligned_cols=111 Identities=22% Similarity=0.257 Sum_probs=71.9
Q ss_pred hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhH-----HHHHHHHHHHcCCCeEEEEEcCchhHHH
Q 000684 192 WRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTL-----SNWAKEFRKWLPTMNVIVYVGTRASREV 266 (1352)
Q Consensus 192 ~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L-----~nW~~Ef~kw~p~l~vvvy~G~~~~r~~ 266 (1352)
++-..+..+.+.+|.|||+.+-..+.......+ .+.+.+|+|..-+ .-|..-+. .|+++++-..|.....-
T Consensus 940 y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p-~~kvvyIap~kalvker~~Dw~~r~~--~~g~k~ie~tgd~~pd~- 1015 (1230)
T KOG0952|consen 940 YHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP-GSKVVYIAPDKALVKERSDDWSKRDE--LPGIKVIELTGDVTPDV- 1015 (1230)
T ss_pred eecchhhhhcCCccCcchhHHHHHHHHHhccCC-CccEEEEcCCchhhcccccchhhhcc--cCCceeEeccCccCCCh-
Confidence 344567889999999999987555544444433 3678999997544 44655443 35777777666643220
Q ss_pred HHHHhhhccccCCCCccccEEEecHHHHHhhH------hhhhccCcceEecchhcccCCc
Q 000684 267 CQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDK------AVLSKIKWNYLMVDEAHRLKNS 320 (1352)
Q Consensus 267 i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~------~~L~~i~w~~lIVDEAHrlKN~ 320 (1352)
......+++|||++..-.-. ..+. .+..+|+||.|-++..
T Consensus 1016 ------------~~v~~~~~~ittpek~dgi~Rsw~~r~~v~--~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1016 ------------KAVREADIVITTPEKWDGISRSWQTRKYVQ--SVSLIVLDEIHLLGED 1061 (1230)
T ss_pred ------------hheecCceEEcccccccCccccccchhhhc--cccceeecccccccCC
Confidence 12236789999999764322 2222 3567999999998654
No 372
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=62.45 E-value=20 Score=45.25 Aligned_cols=49 Identities=18% Similarity=0.343 Sum_probs=37.6
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHHhcC---CCCcEEEEEChhhHHHHH
Q 000684 194 NDTNVILADEMGLGKTVQSVSMLGFLQNAQQ---IPGPFLVVVPLSTLSNWA 242 (1352)
Q Consensus 194 ~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~---~~gp~LIVvP~s~L~nW~ 242 (1352)
.+.-.|+--..|+|||..|+-=++||....+ ..+|+||+.|+.++....
T Consensus 225 k~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYi 276 (747)
T COG3973 225 KNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYI 276 (747)
T ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHH
Confidence 4555677888999999999877777765433 457899999999886553
No 373
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=62.44 E-value=56 Score=39.60 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=36.4
Q ss_pred CCCcHHHHHHHHHHHHHhcCC---CcEEEEcCCCCcHHHHHHHHHHHHHHh
Q 000684 175 GKLRDYQLEGLNFLVNSWRND---TNVILADEMGLGKTVQSVSMLGFLQNA 222 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~---~~~ILADEmGLGKTlqaIa~l~~L~~~ 222 (1352)
..-|+-|++.+...+..+..+ .|+++.-.+|+|||.++--++..+...
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~ 69 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEES 69 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhh
Confidence 457888998887655444333 378999999999999988777777664
No 374
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=62.41 E-value=32 Score=44.76 Aligned_cols=97 Identities=16% Similarity=0.207 Sum_probs=67.1
Q ss_pred hcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHH----HHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEE
Q 000684 491 SSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAE----YMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFL 566 (1352)
Q Consensus 491 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d----~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfL 566 (1352)
.|||..+..-.+-.....|.+++|.+.....+..+.+ ++...|+++..++|+++..+|...++....+..+ ++
T Consensus 266 GSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~---Ii 342 (630)
T TIGR00643 266 GSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIH---LV 342 (630)
T ss_pred CCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCC---EE
Confidence 5788875443333334568899999988776555544 4444589999999999999999999988764333 67
Q ss_pred eecCCC-ccCCCCCccCEEEEcCCC
Q 000684 567 LSTRAG-GLGINLATADTVIIFDSD 590 (1352)
Q Consensus 567 LSTrAg-g~GINL~~AdtVIi~Dsd 590 (1352)
+.|.+. -..+.+.....||+=+.+
T Consensus 343 VgT~~ll~~~~~~~~l~lvVIDEaH 367 (630)
T TIGR00643 343 VGTHALIQEKVEFKRLALVIIDEQH 367 (630)
T ss_pred EecHHHHhccccccccceEEEechh
Confidence 777653 345667777777764433
No 375
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=62.38 E-value=90 Score=36.24 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=28.6
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEC----hhhHHHHHH
Q 000684 194 NDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVP----LSTLSNWAK 243 (1352)
Q Consensus 194 ~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP----~s~L~nW~~ 243 (1352)
.+....+.-..|.|||..+..+...+... ...+.+|.- ...+.||..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~---~~~v~~i~~D~~ri~~~~ql~~ 124 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGK---KKTVGFITTDHSRIGTVQQLQD 124 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEecCCCCHHHHHHHHH
Confidence 34567788889999998876666655432 234444443 134556653
No 376
>PRK14873 primosome assembly protein PriA; Provisional
Probab=62.14 E-value=32 Score=44.95 Aligned_cols=94 Identities=14% Similarity=0.018 Sum_probs=73.9
Q ss_pred hcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhc-C-CcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEee
Q 000684 491 SSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYK-G-FQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLS 568 (1352)
Q Consensus 491 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~-g-~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLS 568 (1352)
.|||..+..+++......|..+||...-......+...|..+ | ..+..+|+.++..+|.....+...+. ..++|-
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~---~~IViG 246 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQ---ARVVVG 246 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCC---CcEEEE
Confidence 689999999999999999999999999998888888888754 4 67999999999999998888876632 347888
Q ss_pred cCCCccCCCCCccCEEEEcC
Q 000684 569 TRAGGLGINLATADTVIIFD 588 (1352)
Q Consensus 569 TrAgg~GINL~~AdtVIi~D 588 (1352)
||++ .=+-+..-..||+-|
T Consensus 247 tRSA-vFaP~~~LgLIIvdE 265 (665)
T PRK14873 247 TRSA-VFAPVEDLGLVAIWD 265 (665)
T ss_pred ccee-EEeccCCCCEEEEEc
Confidence 8874 223344445566554
No 377
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=62.12 E-value=13 Score=45.58 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=35.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHHHH
Q 000684 196 TNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRK 247 (1352)
Q Consensus 196 ~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef~k 247 (1352)
.+.+|+-+.|.|||+.+.+++.... ..|-=|.|.++...|..|-++
T Consensus 187 rglLLfGPpgtGKtmL~~aiAsE~~------atff~iSassLtsK~~Ge~eK 232 (428)
T KOG0740|consen 187 RGLLLFGPPGTGKTMLAKAIATESG------ATFFNISASSLTSKYVGESEK 232 (428)
T ss_pred chhheecCCCCchHHHHHHHHhhhc------ceEeeccHHHhhhhccChHHH
Confidence 3668999999999998888775432 357888999999888666544
No 378
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=61.97 E-value=77 Score=34.87 Aligned_cols=142 Identities=16% Similarity=0.165 Sum_probs=72.5
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHH-HHHHH--HHcCCCeEEEEEcCchhHHHHHHH
Q 000684 194 NDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNW-AKEFR--KWLPTMNVIVYVGTRASREVCQQY 270 (1352)
Q Consensus 194 ~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW-~~Ef~--kw~p~l~vvvy~G~~~~r~~i~~~ 270 (1352)
...++++....|-|||-.|++........ ..+++||==.. ..| ..|.. +-+|.+.+..+ |....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~---G~~V~ivQFlK--g~~~~GE~~~l~~l~~v~~~~~-g~~~~------- 87 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGH---GKKVGVVQFIK--GAWSTGERNLLEFGGGVEFHVM-GTGFT------- 87 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHC---CCeEEEEEEec--CCCccCHHHHHhcCCCcEEEEC-CCCCc-------
Confidence 55688899999999999998877555433 24556652111 111 12222 11233332221 11100
Q ss_pred hhhccccCCCCccccEEEecH-HHHHhhHhhhhccCcceEecchhcccCC----cchHHHHHHHcccccCeEEEeccCCC
Q 000684 271 EFYNDKKVGRPIKFNTLLTTY-EVVLKDKAVLSKIKWNYLMVDEAHRLKN----SEAQLYTTLSEFSTKNKLLITGTPLQ 345 (1352)
Q Consensus 271 e~~~~~~~~~~~kf~VlItTy-e~l~~d~~~L~~i~w~~lIVDEAHrlKN----~~Skl~~aL~~l~~~~rlLLTGTPlq 345 (1352)
|... ...-+ +... +.+..-...+..-.|++||+||.-..-+ ....+...|..-...--++|||.-.+
T Consensus 88 -~~~~-----~~~e~--~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 88 -WETQ-----DRERD--IAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred -ccCC-----CcHHH--HHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 0000 00000 0000 1122234455667899999999766544 34456666665555567999998555
Q ss_pred CCHHHHHHHHh
Q 000684 346 NSVEELWALLH 356 (1352)
Q Consensus 346 Nnl~EL~sLL~ 356 (1352)
..+-|+..++.
T Consensus 160 ~~Lie~ADlVT 170 (191)
T PRK05986 160 RELIEAADLVT 170 (191)
T ss_pred HHHHHhCchhe
Confidence 44444444443
No 379
>CHL00206 ycf2 Ycf2; Provisional
Probab=61.88 E-value=18 Score=51.36 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=32.0
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHH
Q 000684 194 NDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNW 241 (1352)
Q Consensus 194 ~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW 241 (1352)
-.+|++|...+|+|||..|=|++.. ..-|++-|.....+..|
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~e------s~VPFIsISgs~fl~~~ 1670 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATN------SYVPFITVFLNKFLDNK 1670 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHh------cCCceEEEEHHHHhhcc
Confidence 3458899999999999987666643 34588888877877766
No 380
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=61.68 E-value=39 Score=44.89 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=22.3
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 194 NDTNVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 194 ~~~~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
...|.||.-+.|.|||..+-++...+..
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~~ 233 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 4678999999999999988777655443
No 381
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=61.64 E-value=22 Score=38.40 Aligned_cols=57 Identities=21% Similarity=0.287 Sum_probs=36.8
Q ss_pred HhhhhccCcceEecchhcccCC----cchHHHHHHHcccccCeEEEeccCCCCCHHHHHHH
Q 000684 298 KAVLSKIKWNYLMVDEAHRLKN----SEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWAL 354 (1352)
Q Consensus 298 ~~~L~~i~w~~lIVDEAHrlKN----~~Skl~~aL~~l~~~~rlLLTGTPlqNnl~EL~sL 354 (1352)
...+..-.+++||+||.-..-+ ....+...|..-....-++|||.-.+..+-|+..+
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~ 150 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADL 150 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCce
Confidence 4455566899999999875533 23456666666555667999998554444444333
No 382
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=61.51 E-value=38 Score=41.05 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=16.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHH
Q 000684 196 TNVILADEMGLGKTVQSVSML 216 (1352)
Q Consensus 196 ~~~ILADEmGLGKTlqaIa~l 216 (1352)
.+.||.-..|.|||..|-.+.
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA 69 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIA 69 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHH
Confidence 478999999999997664443
No 383
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=61.31 E-value=37 Score=44.86 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=18.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH
Q 000684 196 TNVILADEMGLGKTVQSVSMLGF 218 (1352)
Q Consensus 196 ~~~ILADEmGLGKTlqaIa~l~~ 218 (1352)
.++||.-+.|+|||..+-++...
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~ 75 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANH 75 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999877666543
No 384
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=61.30 E-value=35 Score=45.22 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=26.2
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhH
Q 000684 194 NDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTL 238 (1352)
Q Consensus 194 ~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L 238 (1352)
.+.+++|.-+.|+|||..+-++...+ ..+++.|....++
T Consensus 211 ~~~giLL~GppGtGKT~laraia~~~------~~~~i~i~~~~i~ 249 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKAVANEA------GAYFISINGPEIM 249 (733)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHh------CCeEEEEecHHHh
Confidence 34678999999999998766554433 2456666554443
No 385
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=58.86 E-value=1e+02 Score=39.95 Aligned_cols=93 Identities=18% Similarity=0.261 Sum_probs=70.0
Q ss_pred hcchhHHHHHHHHHhhhcCCeEEEEecch----hHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEE
Q 000684 491 SSGKLVILDKLLVRLHETKHRVLIFSQMV----RMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFL 566 (1352)
Q Consensus 491 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~----~~ldiL~d~L~~~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfL 566 (1352)
.|||..+..--+-...+.|..+.+..... ...+-+..+|...|+.+..+.|+++..+|.+++.+-.++..+ ++
T Consensus 293 GSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~---iv 369 (677)
T COG1200 293 GSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEID---IV 369 (677)
T ss_pred CCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCC---EE
Confidence 57887654433334456777887777643 345667778888899999999999999999999999885554 78
Q ss_pred eecCCC-ccCCCCCccCEEEE
Q 000684 567 LSTRAG-GLGINLATADTVII 586 (1352)
Q Consensus 567 LSTrAg-g~GINL~~AdtVIi 586 (1352)
+-|.|. -..++....-.||+
T Consensus 370 VGTHALiQd~V~F~~LgLVIi 390 (677)
T COG1200 370 VGTHALIQDKVEFHNLGLVII 390 (677)
T ss_pred EEcchhhhcceeecceeEEEE
Confidence 899985 56777777777776
No 386
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=58.69 E-value=61 Score=40.48 Aligned_cols=63 Identities=13% Similarity=0.153 Sum_probs=43.2
Q ss_pred HHHHHHHHH-HhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHHHH
Q 000684 182 LEGLNFLVN-SWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRK 247 (1352)
Q Consensus 182 legvnwL~~-~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef~k 247 (1352)
..+++.++. -+..+.-.+|+-++|.|||..++.++..+... .+++|.|.......+......+
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~---g~kvlYvs~EEs~~qi~~ra~r 143 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKN---QMKVLYVSGEESLQQIKMRAIR 143 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEECcCCHHHHHHHHHH
Confidence 456666652 23345567899999999999998887766543 3578888887666665544444
No 387
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=58.64 E-value=12 Score=44.56 Aligned_cols=49 Identities=22% Similarity=0.266 Sum_probs=32.3
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHHHHH
Q 000684 194 NDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRKW 248 (1352)
Q Consensus 194 ~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef~kw 248 (1352)
...|++|....|+|||+.|-+.... ...+|+=|-=.++...|..|-++.
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Ake------aga~fInv~~s~lt~KWfgE~eKl 174 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKE------AGANFINVSVSNLTSKWFGEAQKL 174 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHH------cCCCcceeeccccchhhHHHHHHH
Confidence 5678899999999999987766522 223444444455556776555543
No 388
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=58.36 E-value=18 Score=40.14 Aligned_cols=40 Identities=30% Similarity=0.484 Sum_probs=26.5
Q ss_pred CcceEecchhcccCCcchHHHHHHHcccccCeEEEeccCCCCC
Q 000684 305 KWNYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNS 347 (1352)
Q Consensus 305 ~w~~lIVDEAHrlKN~~Skl~~aL~~l~~~~rlLLTGTPlqNn 347 (1352)
..+++||||++.+-... +.- +........++|.|=|.|-.
T Consensus 62 ~~~~liiDE~~~~~~g~--l~~-l~~~~~~~~~~l~GDp~Q~~ 101 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPPGY--LLL-LLSLSPAKNVILFGDPLQIP 101 (234)
T ss_pred cCCEEEEeccccCChHH--HHH-HHhhccCcceEEEECchhcc
Confidence 47899999999884322 222 44444445688889998853
No 389
>PTZ00293 thymidine kinase; Provisional
Probab=58.10 E-value=27 Score=38.99 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=24.6
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChh
Q 000684 199 ILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLS 236 (1352)
Q Consensus 199 ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s 236 (1352)
++.-.||+|||...|-.+...... ..+++++-|..
T Consensus 8 vi~GpMfSGKTteLLr~i~~y~~a---g~kv~~~kp~~ 42 (211)
T PTZ00293 8 VIIGPMFSGKTTELMRLVKRFTYS---EKKCVVIKYSK 42 (211)
T ss_pred EEECCCCChHHHHHHHHHHHHHHc---CCceEEEEecc
Confidence 567899999998766655444332 35788888864
No 390
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=58.01 E-value=20 Score=42.58 Aligned_cols=136 Identities=13% Similarity=0.195 Sum_probs=74.6
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHHHHHcCC
Q 000684 172 LRGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRKWLPT 251 (1352)
Q Consensus 172 ~~~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef~kw~p~ 251 (1352)
+..+.+.+.|.+-+..++ ..+.|.|++-.||+|||...-+++..+...... ..+++|=... |+. ++.
T Consensus 124 v~~g~~~~~~~~~L~~~v---~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~-~rivtiEd~~-------El~--~~~ 190 (323)
T PRK13833 124 VTSKIMTEAQASVIRSAI---DSRLNIVISGGTGSGKTTLANAVIAEIVASAPE-DRLVILEDTA-------EIQ--CAA 190 (323)
T ss_pred HHcCCCCHHHHHHHHHHH---HcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCC-ceEEEecCCc-------ccc--cCC
Confidence 345667777776666555 467789999999999998877777666432111 2222222111 111 223
Q ss_pred CeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCCcchHHHHHHHcc
Q 000684 252 MNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEF 331 (1352)
Q Consensus 252 l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN~~Skl~~aL~~l 331 (1352)
.+.+.+.... ..||..+++ ..| ....++|||.|. +.. ..+.++..+
T Consensus 191 ~n~v~l~~~~--------------------------~~~~~~lv~--~aL-R~~PD~IivGEi---Rg~--ea~~~l~a~ 236 (323)
T PRK13833 191 ENAVALHTSD--------------------------TVDMARLLK--STM-RLRPDRIIVGEV---RDG--AALTLLKAW 236 (323)
T ss_pred CCEEEeccCC--------------------------CcCHHHHHH--HHh-CCCCCEEEEeec---CCH--HHHHHHHHH
Confidence 3333321100 124444433 223 367899999995 333 345567777
Q ss_pred cccCeEEEeccCCCCCHHHHHHHH
Q 000684 332 STKNKLLITGTPLQNSVEELWALL 355 (1352)
Q Consensus 332 ~~~~rlLLTGTPlqNnl~EL~sLL 355 (1352)
.+.+.-.+ +|---|+..+...-|
T Consensus 237 ~tGh~G~i-tTiHA~s~~~a~~Rl 259 (323)
T PRK13833 237 NTGHPGGV-TTIHSNTAMSALRRL 259 (323)
T ss_pred cCCCCceE-EEECCCCHHHHHHHH
Confidence 66665333 344556666654433
No 391
>cd00034 ChSh Chromo Shadow Domain, found in association with N-terminal chromo (CHRromatin Organization MOdifier) domain; Chromo domains mediate the interaction of the heterochromatin with other heterochromatin proteins, thereby affecting chromatin structure (e.g. Drosophila and human heterochromatin protein (HP1) and mammalian modifier 1 and modifier 2)
Probab=57.93 E-value=12 Score=32.53 Aligned_cols=48 Identities=21% Similarity=0.273 Sum_probs=30.6
Q ss_pred cccceeeeeccCCCCCCcceeEEEecCCCCcccccccccccc--hhHHHHHHHHHHH
Q 000684 86 QVERIIADRISKDSSGNVTQEYLVKWKGLSYAEATWEKDEII--DFAQDAIDEYKAR 140 (1352)
Q Consensus 86 ~veRIi~~r~~~~~~~~~~~~YLVKW~gL~Y~~~TWE~~~~i--~~~~~~i~~y~~r 140 (1352)
+|++|++.... +++...||+||++ +- ..+-+...+ ...+..|+-|+++
T Consensus 1 ~~~~I~gat~~----~~g~l~fl~kwk~-~~--~~lVp~~~~~~k~P~~vI~FYE~~ 50 (54)
T cd00034 1 LVKPISGASKS----DDGELTFLAKWKD-GQ--ASLVPNKELNVKCPLLVISFYEEH 50 (54)
T ss_pred CceEEEEEEEc----CCCeEEEEEEEeC-Ce--EEEEEHHHHHhhCcHHHHHHHHHh
Confidence 36788875421 1246799999999 54 344444333 2457788888765
No 392
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=57.82 E-value=31 Score=40.67 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 198 VILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 198 ~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
.++..+-|.|||..+.++...+..
T Consensus 29 ~Lf~G~~G~Gk~~la~~~a~~l~c 52 (313)
T PRK05564 29 HIIVGEDGIGKSLLAKEIALKILG 52 (313)
T ss_pred EEeECCCCCCHHHHHHHHHHHHcC
Confidence 478999999999999999887753
No 393
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=57.64 E-value=64 Score=37.87 Aligned_cols=46 Identities=11% Similarity=0.039 Sum_probs=33.6
Q ss_pred CCcHHHHHHHHHHHHHhcCCC--cEEEEcCCCCcHHHHHHHHHHHHHHh
Q 000684 176 KLRDYQLEGLNFLVNSWRNDT--NVILADEMGLGKTVQSVSMLGFLQNA 222 (1352)
Q Consensus 176 ~Lr~yQlegvnwL~~~~~~~~--~~ILADEmGLGKTlqaIa~l~~L~~~ 222 (1352)
.|...|-..+..+...+.+++ .++|... |.||+..|..|+..+...
T Consensus 2 ~l~~~q~~~~~~L~~~~~~~rl~hAyLf~G-~~G~~~~A~~~A~~llC~ 49 (290)
T PRK07276 2 DLKQKQPKVFQRFQTILEQDRLNHAYLFSG-DFASFEMALFLAQSLFCE 49 (290)
T ss_pred cHHHHHHHHHHHHHHHHHcCCcceeeeeeC-CccHHHHHHHHHHHHcCC
Confidence 456678888888887776665 4555544 689999999998888754
No 394
>CHL00176 ftsH cell division protein; Validated
Probab=57.36 E-value=79 Score=41.23 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=23.7
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEE
Q 000684 195 DTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVV 233 (1352)
Q Consensus 195 ~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVv 233 (1352)
..+++|.-+.|+|||..+=++...+ ..|++.+.
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~------~~p~i~is 248 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEA------EVPFFSIS 248 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh------CCCeeecc
Confidence 3478999999999999887775433 34655554
No 395
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=57.31 E-value=25 Score=37.50 Aligned_cols=48 Identities=19% Similarity=0.107 Sum_probs=36.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHHHHH
Q 000684 198 VILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRKW 248 (1352)
Q Consensus 198 ~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef~kw 248 (1352)
.+|+-+.|+|||..++.|+...... ..++++|.......+..+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~---g~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR---GEPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC---CCcEEEEECCCCHHHHHHHHHHc
Confidence 5788999999999999888776543 35789998877776666666554
No 396
>PF14061 Mtf2_C: Polycomb-like MTF2 factor 2
Probab=56.81 E-value=11 Score=31.75 Aligned_cols=26 Identities=31% Similarity=0.726 Sum_probs=19.2
Q ss_pred cccceeeeeccCCCCCCcceeEEEecCCCC
Q 000684 86 QVERIIADRISKDSSGNVTQEYLVKWKGLS 115 (1352)
Q Consensus 86 ~veRIi~~r~~~~~~~~~~~~YLVKW~gL~ 115 (1352)
+.-+|++.|... +...+|||.|.|.+
T Consensus 24 E~~~VlArRV~~----dG~vQYLvEWeg~~ 49 (50)
T PF14061_consen 24 EKYRVLARRVTP----DGKVQYLVEWEGAT 49 (50)
T ss_pred CeeEEEEEEEcC----CCcEEEEEEecCcC
Confidence 456788888653 33579999999864
No 397
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=56.60 E-value=35 Score=43.12 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=22.3
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHH
Q 000684 194 NDTNVILADEMGLGKTVQSVSMLGFLQ 220 (1352)
Q Consensus 194 ~~~~~ILADEmGLGKTlqaIa~l~~L~ 220 (1352)
...+++|.-++|+|||..+-+++..+.
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 346789999999999998888877664
No 398
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.40 E-value=51 Score=39.72 Aligned_cols=39 Identities=21% Similarity=0.260 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcCCC---cEEEEcCCCCcHHHHHHHHHHHHH
Q 000684 182 LEGLNFLVNSWRNDT---NVILADEMGLGKTVQSVSMLGFLQ 220 (1352)
Q Consensus 182 legvnwL~~~~~~~~---~~ILADEmGLGKTlqaIa~l~~L~ 220 (1352)
...+..+.....++. ..++.-+.|+|||..+-++...+.
T Consensus 23 ~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 23 SHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 334444444443433 578999999999988887766554
No 399
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=56.36 E-value=45 Score=40.78 Aligned_cols=28 Identities=14% Similarity=0.103 Sum_probs=20.6
Q ss_pred cCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q 000684 193 RNDTNVILADEMGLGKTVQSVSMLGFLQ 220 (1352)
Q Consensus 193 ~~~~~~ILADEmGLGKTlqaIa~l~~L~ 220 (1352)
..|..+.|..+.|.|||..+-.+...+.
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 4677788888999999986665554443
No 400
>PRK06835 DNA replication protein DnaC; Validated
Probab=55.81 E-value=54 Score=39.17 Aligned_cols=49 Identities=22% Similarity=0.198 Sum_probs=35.7
Q ss_pred CCCCcHHHHHHHHHHHH---Hh-cCCCcEEEEcCCCCcHHHHHHHHHHHHHHh
Q 000684 174 GGKLRDYQLEGLNFLVN---SW-RNDTNVILADEMGLGKTVQSVSMLGFLQNA 222 (1352)
Q Consensus 174 ~~~Lr~yQlegvnwL~~---~~-~~~~~~ILADEmGLGKTlqaIa~l~~L~~~ 222 (1352)
++..+.++..++..+.. .+ ..+.+.+|...+|+|||..+.|++..+...
T Consensus 158 ~~~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~ 210 (329)
T PRK06835 158 PLSPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDR 210 (329)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 34667777777764432 22 245788999999999999999988888754
No 401
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=55.63 E-value=29 Score=42.37 Aligned_cols=40 Identities=23% Similarity=0.247 Sum_probs=28.0
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHH
Q 000684 195 DTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSN 240 (1352)
Q Consensus 195 ~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~n 240 (1352)
..+++|.-+.|+|||..|-++...+ ..+++.|....++..
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~------~~~~i~v~~~~l~~~ 204 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHET------NATFIRVVGSELVQK 204 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHh------CCCEEEeehHHHhHh
Confidence 4578999999999999887776543 245666655554433
No 402
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=55.21 E-value=45 Score=38.89 Aligned_cols=115 Identities=16% Similarity=0.096 Sum_probs=63.7
Q ss_pred HHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHHHHHcCCCeEEEEEcCchh
Q 000684 184 GLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRKWLPTMNVIVYVGTRAS 263 (1352)
Q Consensus 184 gvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef~kw~p~l~vvvy~G~~~~ 263 (1352)
.+.|+...-..|.-+++...-|+|||-++.-++ ...|.-++.+.+....-..++..-+-
T Consensus 83 ~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~--------~s~p~~~l~~~~p~~~a~~~i~~i~~------------- 141 (297)
T COG2842 83 IFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYA--------PSNPNALLIEADPSYTALVLILIICA------------- 141 (297)
T ss_pred HhhhhhhhhhcCceEEEeccccchhHHHHHhhc--------ccCccceeecCChhhHHHHHHHHHHH-------------
Confidence 345555555567778889999999998775444 12355555555555444444433221
Q ss_pred HHHHHHHhhhccccCCCCccccEEEecHHHHHhh----HhhhhccCcceEecchhcccCCcchHHHHHHHcccc--cCeE
Q 000684 264 REVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKD----KAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFST--KNKL 337 (1352)
Q Consensus 264 r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d----~~~L~~i~w~~lIVDEAHrlKN~~Skl~~aL~~l~~--~~rl 337 (1352)
+....++..+... ...+ .-.-..||||||.++.- .....|+.+.. ..-+
T Consensus 142 ---------------------~~~~~~~~~~~d~~~~~~~~l-~~~~~~iivDEA~~L~~---~ale~lr~i~d~~Gi~~ 196 (297)
T COG2842 142 ---------------------AAFGATDGTINDLTERLMIRL-RDTVRLIIVDEADRLPY---RALEELRRIHDKTGIGV 196 (297)
T ss_pred ---------------------HHhcccchhHHHHHHHHHHHH-ccCcceeeeehhhccCh---HHHHHHHHHHHhhCceE
Confidence 1111222222111 1111 34568899999999943 33445555433 3447
Q ss_pred EEeccCC
Q 000684 338 LITGTPL 344 (1352)
Q Consensus 338 LLTGTPl 344 (1352)
.|.|+|-
T Consensus 197 vLvG~pr 203 (297)
T COG2842 197 VLVGMPR 203 (297)
T ss_pred EEecChH
Confidence 7899983
No 403
>PRK07952 DNA replication protein DnaC; Validated
Probab=54.68 E-value=90 Score=35.69 Aligned_cols=62 Identities=15% Similarity=0.246 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHH---hcCC-CcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHHHH
Q 000684 179 DYQLEGLNFLVNS---WRND-TNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRK 247 (1352)
Q Consensus 179 ~yQlegvnwL~~~---~~~~-~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef~k 247 (1352)
+.|..++..+... +..+ .+.+|.-..|+|||..+.+++.++...+ .+++++ ++..|...+..
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g---~~v~~i----t~~~l~~~l~~ 144 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRG---KSVLII----TVADIMSAMKD 144 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEE----EHHHHHHHHHH
Confidence 4466666555432 2222 4678999999999999999998887632 345555 34555555543
No 404
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=54.51 E-value=1.8e+02 Score=35.65 Aligned_cols=135 Identities=13% Similarity=0.197 Sum_probs=68.2
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHHHHHcCCCeEEEEEcCchhHHHHHHHhhhc
Q 000684 195 DTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRKWLPTMNVIVYVGTRASREVCQQYEFYN 274 (1352)
Q Consensus 195 ~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef~kw~p~l~vvvy~G~~~~r~~i~~~e~~~ 274 (1352)
++...|.-.+|.|||.+..=+.+......+..+-.||-+.+--+.. ..++..++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA-~EQLk~Ya------------------------- 256 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGA-VEQLKTYA------------------------- 256 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhH-HHHHHHHH-------------------------
Confidence 5667899999999997644333333312233333344333322211 22232222
Q ss_pred cccCCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCCcchH--HHHHHHcc--cccCeEEEeccCCCCCHHH
Q 000684 275 DKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQ--LYTTLSEF--STKNKLLITGTPLQNSVEE 350 (1352)
Q Consensus 275 ~~~~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN~~Sk--l~~aL~~l--~~~~rlLLTGTPlqNnl~E 350 (1352)
+. ....+ .++.+..-+......|... ++|.||=+=|---.... -.+++... ....-|.|++|-=.+.+.|
T Consensus 257 ~i---m~vp~-~vv~~~~el~~ai~~l~~~--d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlke 330 (407)
T COG1419 257 DI---MGVPL-EVVYSPKELAEAIEALRDC--DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKE 330 (407)
T ss_pred HH---hCCce-EEecCHHHHHHHHHHhhcC--CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHH
Confidence 10 01112 2334555555544555443 88889876543211111 11222222 2344588999987778888
Q ss_pred HHHHHhhcCCC
Q 000684 351 LWALLHFLDHD 361 (1352)
Q Consensus 351 L~sLL~fL~p~ 361 (1352)
++..+.++...
T Consensus 331 i~~~f~~~~i~ 341 (407)
T COG1419 331 IIKQFSLFPID 341 (407)
T ss_pred HHHHhccCCcc
Confidence 87777666554
No 405
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=54.23 E-value=93 Score=37.05 Aligned_cols=122 Identities=18% Similarity=0.343 Sum_probs=64.3
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhH-HHHHHHHHHHcCCCeEEEEEcCchhHHHHHHHhhhcccc
Q 000684 199 ILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTL-SNWAKEFRKWLPTMNVIVYVGTRASREVCQQYEFYNDKK 277 (1352)
Q Consensus 199 ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L-~nW~~Ef~kw~p~l~vvvy~G~~~~r~~i~~~e~~~~~~ 277 (1352)
++.---|.|||.+.--+..++...+ ..+|+ +-..|. ..=..+++.|.-.+.+-++.+...+...
T Consensus 143 l~vGVNG~GKTTTIaKLA~~l~~~g---~~Vll-aA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpA----------- 207 (340)
T COG0552 143 LFVGVNGVGKTTTIAKLAKYLKQQG---KSVLL-AAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPA----------- 207 (340)
T ss_pred EEEecCCCchHhHHHHHHHHHHHCC---CeEEE-EecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcH-----------
Confidence 4566789999976655655555432 23444 444444 4556677777644444443322110000
Q ss_pred CCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCCcchHHHHHHHcc---------cccCeEEE--eccCCCC
Q 000684 278 VGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEF---------STKNKLLI--TGTPLQN 346 (1352)
Q Consensus 278 ~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN~~Skl~~aL~~l---------~~~~rlLL--TGTPlqN 346 (1352)
- .-|+.+ ..-..-++++|+||=|=||-|... +..-|..+ .+.|.++| -||-=||
T Consensus 208 -------a---VafDAi----~~Akar~~DvvliDTAGRLhnk~n-LM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqn 272 (340)
T COG0552 208 -------A---VAFDAI----QAAKARGIDVVLIDTAGRLHNKKN-LMDELKKIVRVIKKDDPDAPHEILLVLDATTGQN 272 (340)
T ss_pred -------H---HHHHHH----HHHHHcCCCEEEEeCcccccCchh-HHHHHHHHHHHhccccCCCCceEEEEEEcccChh
Confidence 0 112222 222334789999999999977643 22222222 23444444 4777777
Q ss_pred CHHH
Q 000684 347 SVEE 350 (1352)
Q Consensus 347 nl~E 350 (1352)
.+..
T Consensus 273 al~Q 276 (340)
T COG0552 273 ALSQ 276 (340)
T ss_pred HHHH
Confidence 6553
No 406
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=54.05 E-value=1e+02 Score=36.63 Aligned_cols=34 Identities=15% Similarity=0.178 Sum_probs=23.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEE
Q 000684 197 NVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVV 233 (1352)
Q Consensus 197 ~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVv 233 (1352)
-..|.-..|.|||.++..+..++... .+.++|+.
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~l~~~---g~~V~Li~ 149 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHKYKAQ---GKKVLLAA 149 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhc---CCeEEEEe
Confidence 34567799999999888887777543 24455554
No 407
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=54.01 E-value=1.1e+02 Score=34.99 Aligned_cols=56 Identities=20% Similarity=0.091 Sum_probs=36.8
Q ss_pred HHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHH
Q 000684 186 NFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAK 243 (1352)
Q Consensus 186 nwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~ 243 (1352)
+.+..-+..+.-++|+...|.|||..++.++..+.... ..+++++.-.........
T Consensus 21 d~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~--g~~vl~iS~E~~~~~~~~ 76 (271)
T cd01122 21 NKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQH--GVRVGTISLEEPVVRTAR 76 (271)
T ss_pred eeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhc--CceEEEEEcccCHHHHHH
Confidence 33333445777889999999999999988877665431 246777765443333333
No 408
>PRK10867 signal recognition particle protein; Provisional
Probab=53.97 E-value=97 Score=38.48 Aligned_cols=25 Identities=20% Similarity=0.426 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHh
Q 000684 198 VILADEMGLGKTVQSVSMLGFLQNA 222 (1352)
Q Consensus 198 ~ILADEmGLGKTlqaIa~l~~L~~~ 222 (1352)
.+++-..|.|||.++.-++.++...
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHh
Confidence 4678899999999998888887654
No 409
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=53.96 E-value=59 Score=47.79 Aligned_cols=62 Identities=18% Similarity=0.189 Sum_probs=41.9
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcC-CCCcEEEEEChhhH
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQ-IPGPFLVVVPLSTL 238 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~-~~gp~LIVvP~s~L 238 (1352)
..|.+-|.+++.-++.. .+.-++|.---|+|||.+..+++..+..... ....++.++|+..-
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~--~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~A 1080 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIIST--KDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEA 1080 (1960)
T ss_pred CCCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHH
Confidence 47999999999887642 3445677888999999887554444332211 12356778898654
No 410
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=53.62 E-value=74 Score=46.82 Aligned_cols=62 Identities=16% Similarity=0.095 Sum_probs=45.4
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhH
Q 000684 172 LRGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTL 238 (1352)
Q Consensus 172 ~~~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L 238 (1352)
+.+..|-+-|.+++.-++.. ...-+||.-.-|+|||..+-+++..+... ...+++++|...-
T Consensus 425 ~~~~~Ls~~Q~~Av~~il~s--~~~v~ii~G~aGTGKTt~l~~l~~~~~~~---G~~V~~lAPTgrA 486 (1960)
T TIGR02760 425 LSEFALSPSNKDAVSTLFTS--TKRFIIINGFGGTGSTEIAQLLLHLASEQ---GYEIQIITAGSLS 486 (1960)
T ss_pred cccCCCCHHHHHHHHHHHhC--CCCeEEEEECCCCCHHHHHHHHHHHHHhc---CCeEEEEeCCHHH
Confidence 33567999999999887742 34567888889999998776666555433 3578999998755
No 411
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=53.40 E-value=28 Score=45.64 Aligned_cols=109 Identities=16% Similarity=0.193 Sum_probs=84.7
Q ss_pred EecCCHHHHHHHHHHHHHhHHhhhccccCchhhHHHHHHHHHHhcCCccccccccCCCCCCCCCCchhhHHHHhhhcchh
Q 000684 416 RVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDTSKLERIILSSGKL 495 (1352)
Q Consensus 416 ~v~Ls~~Qk~~Yk~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~~~l~~li~~SgKl 495 (1352)
...|+..|...+..|.... -+.+++|+.+. ..|||.
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~------------------------~~~~~~Ll~Gv--------------------TGSGKT 231 (730)
T COG1198 196 WLALNQEQQAAVEAILSSL------------------------GGFAPFLLDGV--------------------TGSGKT 231 (730)
T ss_pred ccccCHHHHHHHHHHHHhc------------------------ccccceeEeCC--------------------CCCcHH
Confidence 4567888887777655431 23567776642 369999
Q ss_pred HHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEEeecCC
Q 000684 496 VILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYK-GFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRA 571 (1352)
Q Consensus 496 ~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~-g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfLLSTrA 571 (1352)
.+..+++....+.|+.|||...-......+.+.|..+ |.++..++++.+..+|...-.+...+.. .++|-||.
T Consensus 232 EvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~---~vVIGtRS 305 (730)
T COG1198 232 EVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEA---RVVIGTRS 305 (730)
T ss_pred HHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCc---eEEEEech
Confidence 9999999999999999999999888777777777654 8899999999999999998888877432 36666665
No 412
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=53.40 E-value=49 Score=36.44 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=23.6
Q ss_pred cceEecchhcccCCcchHHHHHHHcccc--cCeEEEecc
Q 000684 306 WNYLMVDEAHRLKNSEAQLYTTLSEFST--KNKLLITGT 342 (1352)
Q Consensus 306 w~~lIVDEAHrlKN~~Skl~~aL~~l~~--~~rlLLTGT 342 (1352)
.++|+|||||-+.. .+...|..+.. ..++++.|.
T Consensus 83 ~~~v~IDEaQF~~~---~~v~~l~~lad~lgi~Vi~~GL 118 (201)
T COG1435 83 VDCVLIDEAQFFDE---ELVYVLNELADRLGIPVICYGL 118 (201)
T ss_pred cCEEEEehhHhCCH---HHHHHHHHHHhhcCCEEEEecc
Confidence 68999999999843 45566666644 455666664
No 413
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=53.35 E-value=21 Score=44.85 Aligned_cols=148 Identities=18% Similarity=0.216 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHhcCCC------cEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCc-EEEEEChhhH-HHHHHHHHHHc-
Q 000684 179 DYQLEGLNFLVNSWRNDT------NVILADEMGLGKTVQSVSMLGFLQNAQQIPGP-FLVVVPLSTL-SNWAKEFRKWL- 249 (1352)
Q Consensus 179 ~yQlegvnwL~~~~~~~~------~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp-~LIVvP~s~L-~nW~~Ef~kw~- 249 (1352)
|+|.-.+..+. .|..+. .++|.-.=|-|||..+.++..+.....+..++ ++++++..-. ..--+++..++
T Consensus 1 PwQ~fi~~~i~-G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~ 79 (477)
T PF03354_consen 1 PWQKFILRSIF-GWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIE 79 (477)
T ss_pred CcHHHHHHHHh-ceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHH
Confidence 56775555443 233222 46777788999998877766555544344444 5666664322 11223333332
Q ss_pred --CCCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCCcchHHHHH
Q 000684 250 --PTMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTT 327 (1352)
Q Consensus 250 --p~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN~~Skl~~a 327 (1352)
|.+.... +.... . .....+... .....+. .+..+...+......++|+||+|.+++. .++.+
T Consensus 80 ~~~~l~~~~--~~~~~-~-~~~~~i~~~---~~~s~~~-------~~s~~~~~~dG~~~~~~i~DE~h~~~~~--~~~~~ 143 (477)
T PF03354_consen 80 ASPELRKRK--KPKII-K-SNKKEIEFP---KTGSFFK-------ALSSDADSLDGLNPSLAIFDELHAHKDD--ELYDA 143 (477)
T ss_pred hChhhccch--hhhhh-h-hhceEEEEc---CCCcEEE-------EEecCCCCccCCCCceEEEeCCCCCCCH--HHHHH
Confidence 2222110 00000 0 000000000 0000111 1223455666778899999999999763 36666
Q ss_pred HHcc---cccCeEEEeccC
Q 000684 328 LSEF---STKNKLLITGTP 343 (1352)
Q Consensus 328 L~~l---~~~~rlLLTGTP 343 (1352)
+..- ..+..++...|+
T Consensus 144 l~~g~~~r~~pl~~~ISTa 162 (477)
T PF03354_consen 144 LESGMGARPNPLIIIISTA 162 (477)
T ss_pred HHhhhccCCCceEEEEeCC
Confidence 6543 234445555554
No 414
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=53.19 E-value=33 Score=45.50 Aligned_cols=41 Identities=27% Similarity=0.348 Sum_probs=29.9
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHH
Q 000684 195 DTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNW 241 (1352)
Q Consensus 195 ~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW 241 (1352)
..+++|.-..|+|||..+-++...+ ..+|+.|-+..++..|
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~------~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATES------GANFIAVRGPEILSKW 527 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHHHhhcc
Confidence 4578899999999999877665433 2467777777666554
No 415
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=53.07 E-value=1.4e+02 Score=37.01 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 198 VILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 198 ~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
..++--.|.|||.++..+..++..
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~ 126 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQR 126 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 457788999999998888777764
No 416
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=53.05 E-value=52 Score=39.75 Aligned_cols=46 Identities=26% Similarity=0.320 Sum_probs=31.6
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChh-hHHHHHHHHHHH
Q 000684 196 TNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLS-TLSNWAKEFRKW 248 (1352)
Q Consensus 196 ~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s-~L~nW~~Ef~kw 248 (1352)
.+++++-..|+|||+.|=|+.... +.+.+=|..+ +.+.|.-|-++.
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc-------~tTFFNVSsstltSKwRGeSEKl 292 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATEC-------GTTFFNVSSSTLTSKWRGESEKL 292 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhh-------cCeEEEechhhhhhhhccchHHH
Confidence 478999999999999877666332 3444444454 458887776554
No 417
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=53.01 E-value=74 Score=39.10 Aligned_cols=105 Identities=16% Similarity=0.227 Sum_probs=61.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHHHHHcCCCeEEEEEcCchhHHHHHHHhhhcccc
Q 000684 198 VILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRKWLPTMNVIVYVGTRASREVCQQYEFYNDKK 277 (1352)
Q Consensus 198 ~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef~kw~p~l~vvvy~G~~~~r~~i~~~e~~~~~~ 277 (1352)
.+++-=.|.|||.+|.-+..||.. ...+| |+||--.--+.=.++++..+-.+.|-+|.-......
T Consensus 103 ImmvGLQGsGKTTt~~KLA~~lkk--~~~kv-llVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~P------------ 167 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAKYLKK--KGKKV-LLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDP------------ 167 (451)
T ss_pred EEEEeccCCChHhHHHHHHHHHHH--cCCce-EEEecccCChHHHHHHHHHHHHcCCceecCCCCCCH------------
Confidence 456777899999999888888877 33444 444433222444555666555555555543211100
Q ss_pred CCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCCcchHHHHHHHcc
Q 000684 278 VGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEF 331 (1352)
Q Consensus 278 ~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN~~Skl~~aL~~l 331 (1352)
-+++..-...+..-.+++||||=|-|+.- +..+..-+..+
T Consensus 168 -------------v~Iak~al~~ak~~~~DvvIvDTAGRl~i-de~Lm~El~~I 207 (451)
T COG0541 168 -------------VEIAKAALEKAKEEGYDVVIVDTAGRLHI-DEELMDELKEI 207 (451)
T ss_pred -------------HHHHHHHHHHHHHcCCCEEEEeCCCcccc-cHHHHHHHHHH
Confidence 11233334555666789999999988865 33444444443
No 418
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=52.63 E-value=29 Score=42.59 Aligned_cols=42 Identities=21% Similarity=0.287 Sum_probs=29.4
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHH
Q 000684 194 NDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNW 241 (1352)
Q Consensus 194 ~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW 241 (1352)
...+++|.-..|+|||..+-+++..+ ..+++.|.+..++..|
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l------~~~fi~i~~s~l~~k~ 219 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHT------TATFIRVVGSEFVQKY 219 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHHHHHHh
Confidence 35689999999999999876665432 3467777665554443
No 419
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.35 E-value=53 Score=39.58 Aligned_cols=97 Identities=14% Similarity=0.166 Sum_probs=57.8
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHHHHHcCCCeEEEEEcCchhHHHHHHHhhhccccC
Q 000684 199 ILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRKWLPTMNVIVYVGTRASREVCQQYEFYNDKKV 278 (1352)
Q Consensus 199 ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef~kw~p~l~vvvy~G~~~~r~~i~~~e~~~~~~~ 278 (1352)
+++-=.|.|||.++.-++.|+...+ .++.||.+.+ --.-=-++++.|+-...|-+|....+....
T Consensus 105 mfVGLqG~GKTTtc~KlA~y~kkkG--~K~~LvcaDT-FRagAfDQLkqnA~k~~iP~ygsyte~dpv------------ 169 (483)
T KOG0780|consen 105 MFVGLQGSGKTTTCTKLAYYYKKKG--YKVALVCADT-FRAGAFDQLKQNATKARVPFYGSYTEADPV------------ 169 (483)
T ss_pred EEEeccCCCcceeHHHHHHHHHhcC--CceeEEeecc-cccchHHHHHHHhHhhCCeeEecccccchH------------
Confidence 4566789999998887777776543 4555555443 222233556666545555444422211110
Q ss_pred CCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCCcchH
Q 000684 279 GRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQ 323 (1352)
Q Consensus 279 ~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN~~Sk 323 (1352)
.+...-...+++-+|++||||-+-|.+-..+.
T Consensus 170 -------------~ia~egv~~fKke~fdvIIvDTSGRh~qe~sL 201 (483)
T KOG0780|consen 170 -------------KIASEGVDRFKKENFDVIIVDTSGRHKQEASL 201 (483)
T ss_pred -------------HHHHHHHHHHHhcCCcEEEEeCCCchhhhHHH
Confidence 11223345677778999999999998766553
No 420
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=52.11 E-value=61 Score=40.26 Aligned_cols=40 Identities=28% Similarity=0.287 Sum_probs=28.0
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHH
Q 000684 194 NDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLS 239 (1352)
Q Consensus 194 ~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~ 239 (1352)
...+++|.-+.|+|||..+=++...+ ..+++-|....++.
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el------~~~fi~V~~seL~~ 255 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANET------SATFLRVVGSELIQ 255 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh------CCCEEEEecchhhh
Confidence 45688999999999999887766533 24566665555443
No 421
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=51.99 E-value=81 Score=35.31 Aligned_cols=49 Identities=20% Similarity=0.260 Sum_probs=34.8
Q ss_pred HHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEECh
Q 000684 185 LNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPL 235 (1352)
Q Consensus 185 vnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~ 235 (1352)
++-++.-+..|.-.+|+...|.|||.-++.++..+.... ..++|++..-
T Consensus 3 LD~~~~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~--g~~vly~s~E 51 (242)
T cd00984 3 LDNLTGGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQ--GKPVLFFSLE 51 (242)
T ss_pred hhhhhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCceEEEeCC
Confidence 334443455667789999999999999988877665432 3578888843
No 422
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=51.51 E-value=2e+02 Score=38.49 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=19.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHH
Q 000684 197 NVILADEMGLGKTVQSVSMLGFL 219 (1352)
Q Consensus 197 ~~ILADEmGLGKTlqaIa~l~~L 219 (1352)
..+|.-.+|.|||..|-++...+
T Consensus 490 ~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46889999999999987776555
No 423
>PRK10867 signal recognition particle protein; Provisional
Probab=51.48 E-value=51 Score=40.85 Aligned_cols=68 Identities=19% Similarity=0.254 Sum_probs=45.1
Q ss_pred hhcchhHHHHHHHHHhhhc-CCeEEEEecch---hHHHHHHHHHHhcCCcEEEEe-CCCCHHHHHHHHHHhcC
Q 000684 490 LSSGKLVILDKLLVRLHET-KHRVLIFSQMV---RMLDILAEYMSYKGFQFQRLD-GSTKAELRHQAMDHFNA 557 (1352)
Q Consensus 490 ~~SgKl~~L~kLL~~l~~~-g~KVLIFSq~~---~~ldiL~d~L~~~g~~~~rld-Gs~~~~eR~~~Id~Fn~ 557 (1352)
..+||-..+.+|...+... |.+|++.+--+ ...+.|..+....|+++.... +..+.+-...++..+..
T Consensus 109 ~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a~~ 181 (433)
T PRK10867 109 QGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEAKE 181 (433)
T ss_pred CCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHHHh
Confidence 3689999999999988887 89998877543 235567777777788876543 22333333345555443
No 424
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=51.44 E-value=2.7e+02 Score=37.85 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=20.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 197 NVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 197 ~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
..++..++|.|||..|-++...+..
T Consensus 597 ~~Lf~Gp~GvGKt~lA~~La~~l~~ 621 (852)
T TIGR03346 597 SFLFLGPTGVGKTELAKALAEFLFD 621 (852)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 4689999999999998888877653
No 425
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=50.79 E-value=32 Score=40.90 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=31.8
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q 000684 174 GGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQ 220 (1352)
Q Consensus 174 ~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~ 220 (1352)
.+.+.+.|.+.+..++ ..+.+++++-.+|+|||...-+++..+.
T Consensus 130 ~g~~~~~~~~~L~~~v---~~~~~ilI~G~tGSGKTTll~aL~~~~~ 173 (319)
T PRK13894 130 RGIMTAAQREAIIAAV---RAHRNILVIGGTGSGKTTLVNAIINEMV 173 (319)
T ss_pred cCCCCHHHHHHHHHHH---HcCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 3556666766655544 4778999999999999977666665543
No 426
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=50.54 E-value=68 Score=40.47 Aligned_cols=133 Identities=15% Similarity=0.159 Sum_probs=73.6
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCc------EEEEcCCCCcHHHHHHHHHH--HHHHhcCCCCcEEEEEChhhH-HHHHHH
Q 000684 174 GGKLRDYQLEGLNFLVNSWRNDTN------VILADEMGLGKTVQSVSMLG--FLQNAQQIPGPFLVVVPLSTL-SNWAKE 244 (1352)
Q Consensus 174 ~~~Lr~yQlegvnwL~~~~~~~~~------~ILADEmGLGKTlqaIa~l~--~L~~~~~~~gp~LIVvP~s~L-~nW~~E 244 (1352)
+..|-|||...+.-|.-.+.++.+ ++|...=|-|||..+.+++. .+... ....-++|++|.--. .+=-.+
T Consensus 59 p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-~~~~~~~i~A~s~~qa~~~F~~ 137 (546)
T COG4626 59 PESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-RSGAGIYILAPSVEQAANSFNP 137 (546)
T ss_pred ccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-hcCCcEEEEeccHHHHHHhhHH
Confidence 358999999999877755555554 47788889999977554443 33333 333457888886422 222222
Q ss_pred HHHHcCCCeEEEEEcCchhHHHHHHHhhhccccCCCCccccEEEecHH-------HHHhhHhhhhccCcceEecchhccc
Q 000684 245 FRKWLPTMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYE-------VVLKDKAVLSKIKWNYLMVDEAHRL 317 (1352)
Q Consensus 245 f~kw~p~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye-------~l~~d~~~L~~i~w~~lIVDEAHrl 317 (1352)
+...+-... .-+.. ....-+-..+++. .+..+.......+..+.||||-|..
T Consensus 138 ar~mv~~~~--------~l~~~-------------~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f 196 (546)
T COG4626 138 ARDMVKRDD--------DLRDL-------------CNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLF 196 (546)
T ss_pred HHHHHHhCc--------chhhh-------------hccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhh
Confidence 222110000 00000 0011111112221 2234556677788999999999999
Q ss_pred CCcchHHHHHHH
Q 000684 318 KNSEAQLYTTLS 329 (1352)
Q Consensus 318 KN~~Skl~~aL~ 329 (1352)
++.. ..+..+.
T Consensus 197 ~~~~-~~~~~~~ 207 (546)
T COG4626 197 GKQE-DMYSEAK 207 (546)
T ss_pred cCHH-HHHHHHH
Confidence 8876 4444444
No 427
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=50.36 E-value=24 Score=40.86 Aligned_cols=28 Identities=36% Similarity=0.656 Sum_probs=21.1
Q ss_pred CcceEecchhcccC-CcchHHHHHHHccc
Q 000684 305 KWNYLMVDEAHRLK-NSEAQLYTTLSEFS 332 (1352)
Q Consensus 305 ~w~~lIVDEAHrlK-N~~Skl~~aL~~l~ 332 (1352)
.-++++|||.||+. +..--+|-++-.|.
T Consensus 103 ~~DVLFIDEIHrl~~~vEE~LYpaMEDf~ 131 (332)
T COG2255 103 EGDVLFIDEIHRLSPAVEEVLYPAMEDFR 131 (332)
T ss_pred cCCeEEEehhhhcChhHHHHhhhhhhhee
Confidence 34789999999994 34556788887764
No 428
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=50.31 E-value=20 Score=47.01 Aligned_cols=57 Identities=16% Similarity=0.147 Sum_probs=42.7
Q ss_pred CCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcC-CCCcEEEEEChhhH
Q 000684 176 KLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQ-IPGPFLVVVPLSTL 238 (1352)
Q Consensus 176 ~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~-~~gp~LIVvP~s~L 238 (1352)
.|.+-|.++|.+. .+.+++....|+|||.+.+.-+.+|....+ ....+|+|+.+.--
T Consensus 2 ~Ln~~Q~~av~~~------~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kA 59 (672)
T PRK10919 2 RLNPGQQQAVEFV------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKA 59 (672)
T ss_pred CCCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHH
Confidence 4788999998742 355666677999999999999999886433 23458888886544
No 429
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=50.14 E-value=61 Score=40.88 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=19.3
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHH
Q 000684 195 DTNVILADEMGLGKTVQSVSMLGF 218 (1352)
Q Consensus 195 ~~~~ILADEmGLGKTlqaIa~l~~ 218 (1352)
..+++|.-..|+|||..+-++...
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999987766543
No 430
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=49.92 E-value=1.6e+02 Score=31.43 Aligned_cols=55 Identities=15% Similarity=0.208 Sum_probs=36.2
Q ss_pred HhhhhccCcceEecchhcccCC----cchHHHHHHHcccccCeEEEeccCCCCCHHHHH
Q 000684 298 KAVLSKIKWNYLMVDEAHRLKN----SEAQLYTTLSEFSTKNKLLITGTPLQNSVEELW 352 (1352)
Q Consensus 298 ~~~L~~i~w~~lIVDEAHrlKN----~~Skl~~aL~~l~~~~rlLLTGTPlqNnl~EL~ 352 (1352)
...+..-.+++||+||.=..-+ ....+...|..-....-++|||--.+..+-|+.
T Consensus 88 ~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~A 146 (159)
T cd00561 88 KEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAA 146 (159)
T ss_pred HHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhC
Confidence 3455566899999999766633 344566666665556679999975554444433
No 431
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=49.91 E-value=2.2e+02 Score=37.97 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=18.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHH
Q 000684 197 NVILADEMGLGKTVQSVSMLGFL 219 (1352)
Q Consensus 197 ~~ILADEmGLGKTlqaIa~l~~L 219 (1352)
..++..++|.|||..|-++...+
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHh
Confidence 36899999999999887776655
No 432
>PRK08760 replicative DNA helicase; Provisional
Probab=49.69 E-value=56 Score=41.09 Aligned_cols=66 Identities=14% Similarity=0.097 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHHHHHc
Q 000684 182 LEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRKWL 249 (1352)
Q Consensus 182 legvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef~kw~ 249 (1352)
...++-+..-|..|.=+|||..+|.|||.-++.++...... ...|++++..--...++...+....
T Consensus 216 ~~~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~--~g~~V~~fSlEMs~~ql~~Rl~a~~ 281 (476)
T PRK08760 216 YNDFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIK--SKKGVAVFSMEMSASQLAMRLISSN 281 (476)
T ss_pred cHHHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHh--cCCceEEEeccCCHHHHHHHHHHhh
Confidence 34445555455666677999999999999999888766432 1347888888777777777665543
No 433
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=49.44 E-value=1.5e+02 Score=34.41 Aligned_cols=33 Identities=18% Similarity=0.322 Sum_probs=23.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEE
Q 000684 198 VILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVV 233 (1352)
Q Consensus 198 ~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVv 233 (1352)
.++.-..|.|||.++..+..++... ...+++|.
T Consensus 75 i~l~G~~G~GKTTt~akLA~~l~~~---g~~V~li~ 107 (272)
T TIGR00064 75 ILFVGVNGVGKTTTIAKLANKLKKQ---GKSVLLAA 107 (272)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEe
Confidence 4567899999999988887777543 23455554
No 434
>PRK05748 replicative DNA helicase; Provisional
Probab=49.38 E-value=50 Score=41.14 Aligned_cols=62 Identities=10% Similarity=0.120 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHH
Q 000684 182 LEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEF 245 (1352)
Q Consensus 182 legvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef 245 (1352)
..+++-+..-+..|.-++||.-+|.|||.-++.++...... ...|++++..--.-.+....+
T Consensus 190 ~~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~--~g~~v~~fSlEms~~~l~~R~ 251 (448)
T PRK05748 190 FTDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATK--TDKNVAIFSLEMGAESLVMRM 251 (448)
T ss_pred hHHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHh--CCCeEEEEeCCCCHHHHHHHH
Confidence 44555555556666778999999999999999888765432 234788887655555544444
No 435
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=49.33 E-value=74 Score=37.93 Aligned_cols=45 Identities=20% Similarity=0.306 Sum_probs=33.1
Q ss_pred CcHHHHHHHHHHHHHhcCCCc-EEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 177 LRDYQLEGLNFLVNSWRNDTN-VILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 177 Lr~yQlegvnwL~~~~~~~~~-~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
++|+|...-.-+...+.+-.+ .++....|+|||..+..|...+.-
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC 47 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLC 47 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcC
Confidence 367777776666655443334 568999999999999999888764
No 436
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=49.08 E-value=80 Score=38.63 Aligned_cols=38 Identities=11% Similarity=0.123 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 183 EGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 183 egvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
..++.+.-. -.|..++|...-|.|||..+-.+...+..
T Consensus 158 rvID~l~PI-GkGQR~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 158 RIIDLIAPI-GKGQRGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred eeeeeeccc-ccCceEEEeCCCCCChhHHHHHHHHHHHh
Confidence 344444322 35556666677899999766665555543
No 437
>PRK10865 protein disaggregation chaperone; Provisional
Probab=48.98 E-value=7.3e+02 Score=33.84 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=20.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 197 NVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 197 ~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
..++.-++|+|||..|-++..++..
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhc
Confidence 4688999999999999888777653
No 438
>smart00300 ChSh Chromo Shadow Domain.
Probab=48.94 E-value=13 Score=33.08 Aligned_cols=48 Identities=21% Similarity=0.319 Sum_probs=31.2
Q ss_pred CcccceeeeeccCCCCCCcceeEEEecCCCCcccccccccccc--hhHHHHHHHHHHH
Q 000684 85 SQVERIIADRISKDSSGNVTQEYLVKWKGLSYAEATWEKDEII--DFAQDAIDEYKAR 140 (1352)
Q Consensus 85 ~~veRIi~~r~~~~~~~~~~~~YLVKW~gL~Y~~~TWE~~~~i--~~~~~~i~~y~~r 140 (1352)
..+|+|++... . +....||+||++ +- ..+-+...+ ...+..|+-|+++
T Consensus 7 ~~~e~Ivg~~d---~--~G~l~flikwk~-~~--~~lVp~~~~~~k~P~~vI~FYE~~ 56 (61)
T smart00300 7 KSWEDIVGITK---D--DGELTFLIKWKD-DA--ASLVPNKEANVKCPQKVIRFYESH 56 (61)
T ss_pred CCHHHHhceec---C--CCeEEEEEEEeC-Cc--EEEEEHHHHHHHChHHHHHHHHHh
Confidence 45778877542 2 335799999999 54 344444333 3567888888876
No 439
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=48.71 E-value=53 Score=38.27 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=22.1
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHh
Q 000684 195 DTNVILADEMGLGKTVQSVSMLGFLQNA 222 (1352)
Q Consensus 195 ~~~~ILADEmGLGKTlqaIa~l~~L~~~ 222 (1352)
+...+++-.+|.|||.++..++.++...
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3356688899999999998888877653
No 440
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=48.33 E-value=49 Score=43.76 Aligned_cols=57 Identities=21% Similarity=0.253 Sum_probs=43.0
Q ss_pred CCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcC-CCCcEEEEEChhhH
Q 000684 176 KLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQ-IPGPFLVVVPLSTL 238 (1352)
Q Consensus 176 ~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~-~~gp~LIVvP~s~L 238 (1352)
.|-|-|.++|.. ....+++..-.|+|||.+.+.-+.+|....+ ....+|+|+-+.--
T Consensus 4 ~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkA 61 (715)
T TIGR01075 4 GLNDKQREAVAA------PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKA 61 (715)
T ss_pred ccCHHHHHHHcC------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHH
Confidence 488999999863 3456777778899999999999999987533 23457888886533
No 441
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=48.14 E-value=88 Score=39.35 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHh
Q 000684 198 VILADEMGLGKTVQSVSMLGFLQNA 222 (1352)
Q Consensus 198 ~ILADEmGLGKTlqaIa~l~~L~~~ 222 (1352)
..|.-..|.|||.++.-+..++...
T Consensus 259 i~LvGpnGvGKTTTiaKLA~~~~~~ 283 (484)
T PRK06995 259 FALMGPTGVGKTTTTAKLAARCVMR 283 (484)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHh
Confidence 4578899999999887777666443
No 442
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=48.02 E-value=1.1e+02 Score=37.71 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 000684 198 VILADEMGLGKTVQSVSMLGFL 219 (1352)
Q Consensus 198 ~ILADEmGLGKTlqaIa~l~~L 219 (1352)
.++.-..|.|||.++.-++..+
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5678899999999998887654
No 443
>PRK09165 replicative DNA helicase; Provisional
Probab=47.99 E-value=83 Score=39.82 Aligned_cols=63 Identities=16% Similarity=0.075 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcC------------CCCcEEEEEChhhHHHHHHHHH
Q 000684 184 GLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQ------------IPGPFLVVVPLSTLSNWAKEFR 246 (1352)
Q Consensus 184 gvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~------------~~gp~LIVvP~s~L~nW~~Ef~ 246 (1352)
+++-+..-+..|.=+|||.-+|.|||.-++.++.......+ ...++|++..--...+...-+-
T Consensus 206 ~LD~~~gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~l 280 (497)
T PRK09165 206 DLDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRIL 280 (497)
T ss_pred HHhhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHHH
Confidence 34444444555556799999999999998888766543211 1357888877655555555443
No 444
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=47.41 E-value=31 Score=43.50 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhcCCC---cEEEEcCCCCcHHHHHHHHHHHHHHh
Q 000684 181 QLEGLNFLVNSWRNDT---NVILADEMGLGKTVQSVSMLGFLQNA 222 (1352)
Q Consensus 181 QlegvnwL~~~~~~~~---~~ILADEmGLGKTlqaIa~l~~L~~~ 222 (1352)
|...+..|...+.+++ .-++.-.-|+|||..+=-|+..|...
T Consensus 21 Qe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~ 65 (515)
T COG2812 21 QEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCE 65 (515)
T ss_pred cHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCC
Confidence 4444455554444443 44778899999999876666666443
No 445
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=47.11 E-value=43 Score=40.48 Aligned_cols=60 Identities=18% Similarity=0.307 Sum_probs=45.6
Q ss_pred CCcHHHHHHHHHHHHHh--cCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhH
Q 000684 176 KLRDYQLEGLNFLVNSW--RNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTL 238 (1352)
Q Consensus 176 ~Lr~yQlegvnwL~~~~--~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L 238 (1352)
+|-+-|...++.++..+ ..+.+..|.-.-|+|||...=++..++.. ....+++++|+.+-
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~---~~~~~~~~a~tg~A 62 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS---RGKKVLVTAPTGIA 62 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc---ccceEEEecchHHH
Confidence 46778999999886666 45667889999999999987777766644 23578889997654
No 446
>PRK05973 replicative DNA helicase; Provisional
Probab=46.63 E-value=47 Score=37.78 Aligned_cols=57 Identities=16% Similarity=0.092 Sum_probs=38.8
Q ss_pred HHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHHH
Q 000684 187 FLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFR 246 (1352)
Q Consensus 187 wL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef~ 246 (1352)
++..-+..|.-.+|+..+|.|||+-++-|+...... ..+++++.--..-.+-.+.+.
T Consensus 56 ~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~---Ge~vlyfSlEes~~~i~~R~~ 112 (237)
T PRK05973 56 ELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS---GRTGVFFTLEYTEQDVRDRLR 112 (237)
T ss_pred HhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEEEeCCHHHHHHHHH
Confidence 344455677788999999999999999888766532 346788875544444334443
No 447
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=46.09 E-value=93 Score=38.46 Aligned_cols=62 Identities=16% Similarity=0.164 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHH
Q 000684 182 LEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEF 245 (1352)
Q Consensus 182 legvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef 245 (1352)
..+++-+..-+..|.-.+|+..+|.|||.-++.++..+.... ..++|++..--.-.+....+
T Consensus 182 ~~~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~--g~~vl~~SlEm~~~~i~~R~ 243 (434)
T TIGR00665 182 FTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIKE--GKPVAFFSLEMSAEQLAMRM 243 (434)
T ss_pred chhhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhC--CCeEEEEeCcCCHHHHHHHH
Confidence 445555554556666779999999999999988877654322 34788887765444443333
No 448
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=46.04 E-value=73 Score=41.45 Aligned_cols=90 Identities=17% Similarity=0.115 Sum_probs=63.3
Q ss_pred CCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhc---CCCCcEEEEECh-hhHHHHHHHHHHHcCC
Q 000684 176 KLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQ---QIPGPFLVVVPL-STLSNWAKEFRKWLPT 251 (1352)
Q Consensus 176 ~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~---~~~gp~LIVvP~-s~L~nW~~Ef~kw~p~ 251 (1352)
.|.+-|+.+...+. ...-.|+.-..|+|||.+++-++..|.... ...-|+||||=+ +.+.|...-+-.. +
T Consensus 378 ildsSq~~A~qs~l----tyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~~--q 451 (1025)
T KOG1807|consen 378 ILDSSQQFAKQSKL----TYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYYH--Q 451 (1025)
T ss_pred eecHHHHHHHHHHh----hhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHhc--C
Confidence 67778999988876 345568899999999999988888776543 345699999986 5677776555432 3
Q ss_pred CeEEEEEcCchhHHHHHHHh
Q 000684 252 MNVIVYVGTRASREVCQQYE 271 (1352)
Q Consensus 252 l~vvvy~G~~~~r~~i~~~e 271 (1352)
-..++..|+......++.+.
T Consensus 452 rpsImr~gsr~~spyLk~~n 471 (1025)
T KOG1807|consen 452 RPSIMRQGSRFFSPYLKVHN 471 (1025)
T ss_pred CceEEEeccccCCHHHHHHH
Confidence 34456667766555444443
No 449
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=45.87 E-value=26 Score=40.20 Aligned_cols=124 Identities=23% Similarity=0.279 Sum_probs=63.2
Q ss_pred HHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHHHHHcCCCeEEEEEcCchhHH
Q 000684 186 NFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRKWLPTMNVIVYVGTRASRE 265 (1352)
Q Consensus 186 nwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef~kw~p~l~vvvy~G~~~~r~ 265 (1352)
.+|......+.+++++-++|.|||.+.-+++.++... ...+++|-... |+ ..+..+.+.+.....
T Consensus 118 ~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~---~~~iv~iEd~~-------E~--~l~~~~~~~~~~~~~--- 182 (270)
T PF00437_consen 118 EFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE---DERIVTIEDPP-------EL--RLPGPNQIQIQTRRD--- 182 (270)
T ss_dssp HHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT---TSEEEEEESSS--------S----SCSSEEEEEEETT---
T ss_pred HHHhhccccceEEEEECCCccccchHHHHHhhhcccc---ccceEEecccc-------ce--eecccceEEEEeecC---
Confidence 3444444568899999999999999888777655443 23344443211 11 113333222211100
Q ss_pred HHHHHhhhccccCCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCCcchHHHHHHHcccccCeEEEeccCCC
Q 000684 266 VCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQ 345 (1352)
Q Consensus 266 ~i~~~e~~~~~~~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN~~Skl~~aL~~l~~~~rlLLTGTPlq 345 (1352)
-.+|..++.. .| ....++|||+|. ++.. ...++....+.+...+| |--.
T Consensus 183 ----------------------~~~~~~~l~~--~L-R~~pD~iiigEi---R~~e--~~~~~~a~~tGh~~~~t-T~Ha 231 (270)
T PF00437_consen 183 ----------------------EISYEDLLKS--AL-RQDPDVIIIGEI---RDPE--AAEAIQAANTGHLGSLT-TLHA 231 (270)
T ss_dssp ----------------------TBSHHHHHHH--HT-TS--SEEEESCE----SCH--HHHHHHHHHTT-EEEEE-EEE-
T ss_pred ----------------------cccHHHHHHH--Hh-cCCCCccccccc---CCHh--HHHHHHhhccCCceeee-eeec
Confidence 0244444332 22 346799999995 3443 34446666677776454 3334
Q ss_pred CCHHHHHHHH
Q 000684 346 NSVEELWALL 355 (1352)
Q Consensus 346 Nnl~EL~sLL 355 (1352)
++..+...-|
T Consensus 232 ~s~~~~i~Rl 241 (270)
T PF00437_consen 232 NSAEDAIERL 241 (270)
T ss_dssp SSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 5555554433
No 450
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=45.48 E-value=1.8e+02 Score=36.17 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=20.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHH
Q 000684 197 NVILADEMGLGKTVQSVSMLGFLQ 220 (1352)
Q Consensus 197 ~~ILADEmGLGKTlqaIa~l~~L~ 220 (1352)
-.+++-..|.|||.++.-++.++.
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 457899999999999988888875
No 451
>PF12846 AAA_10: AAA-like domain
Probab=45.25 E-value=61 Score=37.09 Aligned_cols=44 Identities=18% Similarity=0.239 Sum_probs=30.5
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHH
Q 000684 195 DTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNW 241 (1352)
Q Consensus 195 ~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW 241 (1352)
+.++++.-.+|.|||..+..++..+...+ .+++|+=|..-...|
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g---~~~~i~D~~g~~~~~ 44 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG---PRVVIFDPKGDYSPL 44 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC---CCEEEEcCCchHHHH
Confidence 35788999999999988887776666543 456666555444443
No 452
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=44.99 E-value=44 Score=44.23 Aligned_cols=57 Identities=23% Similarity=0.246 Sum_probs=42.2
Q ss_pred CCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcC-CCCcEEEEEChhhH
Q 000684 176 KLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQ-IPGPFLVVVPLSTL 238 (1352)
Q Consensus 176 ~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~-~~gp~LIVvP~s~L 238 (1352)
.|-|-|.++|.+ ....+++....|+|||.+.+.-+.+|....+ ....+|+|+-+.--
T Consensus 9 ~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kA 66 (721)
T PRK11773 9 SLNDKQREAVAA------PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKA 66 (721)
T ss_pred hcCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHH
Confidence 489999999973 2356667777999999999999999986433 23347888876443
No 453
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=44.97 E-value=37 Score=35.10 Aligned_cols=33 Identities=27% Similarity=0.318 Sum_probs=24.0
Q ss_pred HHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHH
Q 000684 187 FLVNSWRNDTNVILADEMGLGKTVQSVSMLGFL 219 (1352)
Q Consensus 187 wL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L 219 (1352)
.+......+.-.+|.-++|.|||.-+=+++..+
T Consensus 14 ~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 14 AFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 344445566677799999999998776666554
No 454
>PRK06904 replicative DNA helicase; Validated
Probab=44.97 E-value=1.9e+02 Score=36.30 Aligned_cols=63 Identities=16% Similarity=0.119 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHHH
Q 000684 182 LEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFR 246 (1352)
Q Consensus 182 legvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef~ 246 (1352)
..+++-+..-|..|.=+|||.-+|.|||.-++.++...... ...|+|++..--.-.++...+-
T Consensus 208 ~~~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~--~g~~Vl~fSlEMs~~ql~~Rll 270 (472)
T PRK06904 208 FTDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMA--SEKPVLVFSLEMPAEQIMMRML 270 (472)
T ss_pred hHHHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHh--cCCeEEEEeccCCHHHHHHHHH
Confidence 34555555566777778999999999999888777655432 2458888887655566555443
No 455
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=44.64 E-value=55 Score=39.87 Aligned_cols=131 Identities=13% Similarity=0.101 Sum_probs=61.6
Q ss_pred EEEEcCCCCcHHHHHHHHH-HHHHHhcCCCCcEEEEEChh--hHHHHHHHHHHHcCCCeEE-EEEcCchhHHHHHHHhhh
Q 000684 198 VILADEMGLGKTVQSVSML-GFLQNAQQIPGPFLVVVPLS--TLSNWAKEFRKWLPTMNVI-VYVGTRASREVCQQYEFY 273 (1352)
Q Consensus 198 ~ILADEmGLGKTlqaIa~l-~~L~~~~~~~gp~LIVvP~s--~L~nW~~Ef~kw~p~l~vv-vy~G~~~~r~~i~~~e~~ 273 (1352)
.|+.---|+|||..++..+ ..+... .....+||+.|.. +-.+-..++...++.+.+- .+..+... +++.
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~-~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~------~~i~ 76 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAIN-KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSS------MEIK 76 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhc-CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCc------cEEE
Confidence 4566678999998866444 344432 1235677787752 2244444444333222110 11100000 0000
Q ss_pred ccccCCCCccccEEEecHHHHHhhHhhhhccC-cceEecchhcccCCcchHHHHHHHcccc---cCeEEEeccCCC
Q 000684 274 NDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIK-WNYLMVDEAHRLKNSEAQLYTTLSEFST---KNKLLITGTPLQ 345 (1352)
Q Consensus 274 ~~~~~~~~~kf~VlItTye~l~~d~~~L~~i~-w~~lIVDEAHrlKN~~Skl~~aL~~l~~---~~rlLLTGTPlq 345 (1352)
. ......|++..- ..+...+.... .++++||||..+. .....+++.+++. ..++++|.||-.
T Consensus 77 ~-----~~~g~~i~f~g~---~d~~~~ik~~~~~~~~~idEa~~~~--~~~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 77 I-----LNTGKKFIFKGL---NDKPNKLKSGAGIAIIWFEEASQLT--FEDIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred e-----cCCCeEEEeecc---cCChhHhhCcceeeeehhhhhhhcC--HHHHHHHHHHhhccCCccEEEEEcCcCC
Confidence 0 000111222111 12233344433 5899999999984 2344444444432 225999999953
No 456
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=44.06 E-value=36 Score=39.28 Aligned_cols=42 Identities=26% Similarity=0.309 Sum_probs=33.0
Q ss_pred CcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q 000684 177 LRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQ 220 (1352)
Q Consensus 177 Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~ 220 (1352)
+.+.|.+.+.+++. ..+..++++-++|.|||...-+++..+.
T Consensus 64 ~~~~~~~~l~~~~~--~~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 64 LKPENLEIFRKLLE--KPHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCHHHHHHHHHHHh--cCCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 67888888887763 2344578999999999998888877663
No 457
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=43.30 E-value=1e+02 Score=37.78 Aligned_cols=88 Identities=17% Similarity=0.144 Sum_probs=59.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHHHHHcCCCeEEEEEcCchhHHHHHHHhhhccc
Q 000684 197 NVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRKWLPTMNVIVYVGTRASREVCQQYEFYNDK 276 (1352)
Q Consensus 197 ~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef~kw~p~l~vvvy~G~~~~r~~i~~~e~~~~~ 276 (1352)
-.++.-+.|.||+..-+-.+..+... +++|.|+=..-+.||.--..+.--
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~----~~vLYVsGEES~~QiklRA~RL~~-------------------------- 144 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKR----GKVLYVSGEESLQQIKLRADRLGL-------------------------- 144 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhc----CcEEEEeCCcCHHHHHHHHHHhCC--------------------------
Confidence 35789999999997666555555432 389999999889999877776520
Q ss_pred cCCCCccccEEEecHHHHHhhHhhhhccCcceEecchhcccCC
Q 000684 277 KVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKN 319 (1352)
Q Consensus 277 ~~~~~~kf~VlItTye~l~~d~~~L~~i~w~~lIVDEAHrlKN 319 (1352)
...++.+.....+-.-...+...+.+++|||=.+-+-+
T Consensus 145 -----~~~~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s 182 (456)
T COG1066 145 -----PTNNLYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYS 182 (456)
T ss_pred -----CccceEEehhcCHHHHHHHHHhcCCCEEEEeccceeec
Confidence 01234444443343444556667899999998777643
No 458
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=42.98 E-value=35 Score=36.98 Aligned_cols=44 Identities=25% Similarity=0.381 Sum_probs=34.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHH
Q 000684 173 RGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFL 219 (1352)
Q Consensus 173 ~~~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L 219 (1352)
..+.+-+.|.+-+.+++. .+.+++++-++|.|||...-+++..+
T Consensus 6 ~~g~~~~~~~~~l~~~v~---~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 6 AQGTFSPLQAAYLWLAVE---ARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HcCCCCHHHHHHHHHHHh---CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 346777888888887764 68899999999999998765555443
No 459
>PRK10263 DNA translocase FtsK; Provisional
Probab=42.90 E-value=1e+02 Score=42.87 Aligned_cols=42 Identities=21% Similarity=0.278 Sum_probs=28.3
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCC-CCcEEEEECh
Q 000684 194 NDTNVILADEMGLGKTVQSVSMLGFLQNAQQI-PGPFLVVVPL 235 (1352)
Q Consensus 194 ~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~-~gp~LIVvP~ 235 (1352)
+..+++++--+|.|||+..-++|..+...... .-.+++|=|.
T Consensus 1009 k~PHLLIAGaTGSGKSv~LntLIlSLl~~~sPeeVrl~LIDPK 1051 (1355)
T PRK10263 1009 KMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPK 1051 (1355)
T ss_pred cCCcEEEecCCCCCHHHHHHHHHHHHHHhCCccceEEEEECCC
Confidence 34688999999999999887777665543322 2234555555
No 460
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=42.79 E-value=1.7e+02 Score=36.28 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=29.2
Q ss_pred CcceEecchhcccCCcchHHHHHHHccc-----ccCeEEEeccCCCCCHHHHHHHHhhcC
Q 000684 305 KWNYLMVDEAHRLKNSEAQLYTTLSEFS-----TKNKLLITGTPLQNSVEELWALLHFLD 359 (1352)
Q Consensus 305 ~w~~lIVDEAHrlKN~~Skl~~aL~~l~-----~~~rlLLTGTPlqNnl~EL~sLL~fL~ 359 (1352)
..++++||.+=+..+ ...+...+..+. ....|.|++|--.+.+.++...+..+.
T Consensus 269 ~~d~VLIDTaGrsqr-d~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~~ 327 (420)
T PRK14721 269 GKHMVLIDTVGMSQR-DQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHG 327 (420)
T ss_pred CCCEEEecCCCCCcc-hHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcCCC
Confidence 457788887644332 222334444332 233477888866666666655544333
No 461
>PRK05595 replicative DNA helicase; Provisional
Probab=42.71 E-value=67 Score=39.98 Aligned_cols=62 Identities=10% Similarity=0.149 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHH
Q 000684 182 LEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEF 245 (1352)
Q Consensus 182 legvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef 245 (1352)
...++-+..-+..|.=+|||.-+|.|||.-++.++..+... ...++|++..--.-.+....+
T Consensus 188 ~~~ld~~~~G~~~g~liviaarpg~GKT~~al~ia~~~a~~--~g~~vl~fSlEms~~~l~~R~ 249 (444)
T PRK05595 188 FRELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALR--EGKSVAIFSLEMSKEQLAYKL 249 (444)
T ss_pred hHHHHHhcCCCCCCcEEEEEecCCCChHHHHHHHHHHHHHH--cCCcEEEEecCCCHHHHHHHH
Confidence 44555555556666677899999999999998888655322 135778887765455554443
No 462
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=42.36 E-value=1.6e+02 Score=36.14 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=20.7
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 195 DTNVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 195 ~~~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
+....++-..|.|||.++..+..++..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~ 232 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLK 232 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 445568889999999988877766644
No 463
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=42.23 E-value=57 Score=36.30 Aligned_cols=53 Identities=15% Similarity=0.126 Sum_probs=37.7
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHHHHH
Q 000684 194 NDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRKW 248 (1352)
Q Consensus 194 ~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef~kw 248 (1352)
.|...+|+-+.|+|||+-++-|+..-.... ..++|.|+-.....+..+.+..+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~--ge~vlyvs~ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF--GEKVLYVSFEEPPEELIENMKSF 70 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH--T--EEEEESSS-HHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc--CCcEEEEEecCCHHHHHHHHHHc
Confidence 455678999999999999998886554431 13678888777777777777765
No 464
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=40.56 E-value=1.3e+02 Score=37.24 Aligned_cols=66 Identities=20% Similarity=0.227 Sum_probs=43.4
Q ss_pred hcchhHHHHHHHHHhh-hcCCeEEEEecch---hHHHHHHHHHHhcCCcEEEEeCCCCH-HHHHHHHHHhc
Q 000684 491 SSGKLVILDKLLVRLH-ETKHRVLIFSQMV---RMLDILAEYMSYKGFQFQRLDGSTKA-ELRHQAMDHFN 556 (1352)
Q Consensus 491 ~SgKl~~L~kLL~~l~-~~g~KVLIFSq~~---~~ldiL~d~L~~~g~~~~rldGs~~~-~eR~~~Id~Fn 556 (1352)
.+||-..+.+|...+. ..|.+|++.+--+ ...+.|..+....|+++......... +--..++..+.
T Consensus 109 GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~ 179 (428)
T TIGR00959 109 GSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAK 179 (428)
T ss_pred CCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHH
Confidence 6899999999998876 5788998877543 24566777777778887664432333 22234455543
No 465
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=40.25 E-value=1.1e+02 Score=41.60 Aligned_cols=96 Identities=10% Similarity=0.078 Sum_probs=67.3
Q ss_pred hcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHh----cCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEE
Q 000684 491 SSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSY----KGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFL 566 (1352)
Q Consensus 491 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~----~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfL 566 (1352)
.|||..+....+-.....|.+|+|.+..+..+......+.. .++....++|.++..++...+..+..+..+ ++
T Consensus 482 GsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~d---IV 558 (926)
T TIGR00580 482 GFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKID---IL 558 (926)
T ss_pred CccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCce---EE
Confidence 57887655443333335678999999998887776665543 467888999999999999999988874333 66
Q ss_pred eecCC-CccCCCCCccCEEEEcCC
Q 000684 567 LSTRA-GGLGINLATADTVIIFDS 589 (1352)
Q Consensus 567 LSTrA-gg~GINL~~AdtVIi~Ds 589 (1352)
+.|.+ ....+.+.....||+=.-
T Consensus 559 IGTp~ll~~~v~f~~L~llVIDEa 582 (926)
T TIGR00580 559 IGTHKLLQKDVKFKDLGLLIIDEE 582 (926)
T ss_pred EchHHHhhCCCCcccCCEEEeecc
Confidence 66653 344567777777777433
No 466
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=40.19 E-value=39 Score=39.79 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=30.5
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q 000684 175 GKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 175 ~~Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
+.+-+.|.+- |..+...+.+++++-.||+|||..+-+++..+..
T Consensus 115 g~~~~~~~~~---L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 115 GIMTAAQRDV---LREAVLARKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCCCHHHHHH---HHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 3444444444 4444457789999999999999988777766643
No 467
>PRK12377 putative replication protein; Provisional
Probab=40.17 E-value=1.5e+02 Score=34.10 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=30.8
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHH
Q 000684 195 DTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNW 241 (1352)
Q Consensus 195 ~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW 241 (1352)
..+.+|.-..|+|||-.+.|++..+...+ .+++++.-..++...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g---~~v~~i~~~~l~~~l 144 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKG---RSVIVVTVPDVMSRL 144 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcC---CCeEEEEHHHHHHHH
Confidence 35778999999999999999998887532 234554444444433
No 468
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=40.14 E-value=1.4e+02 Score=35.57 Aligned_cols=55 Identities=15% Similarity=0.124 Sum_probs=38.4
Q ss_pred HHHHHHHH--HhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHH
Q 000684 183 EGLNFLVN--SWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSN 240 (1352)
Q Consensus 183 egvnwL~~--~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~n 240 (1352)
.+++-++. -+..+.-..|+-+.|+|||..++.++...... .+++++|.....+..
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~---g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 41 LSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKA---GGTAAFIDAEHALDP 97 (321)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEcccchhHH
Confidence 45666653 34455566789999999999998888776543 467777776665543
No 469
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=40.03 E-value=92 Score=36.40 Aligned_cols=47 Identities=21% Similarity=0.343 Sum_probs=35.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHHHHH
Q 000684 196 TNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRKW 248 (1352)
Q Consensus 196 ~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef~kw 248 (1352)
.+.+|....|+||+..|-|+.. ..+..|.-|....+++.|.-|-++.
T Consensus 167 rgiLLyGPPGTGKSYLAKAVAT------EAnSTFFSvSSSDLvSKWmGESEkL 213 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVAT------EANSTFFSVSSSDLVSKWMGESEKL 213 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHh------hcCCceEEeehHHHHHHHhccHHHH
Confidence 3667899999999987766552 2235677888888899998887664
No 470
>PHA00350 putative assembly protein
Probab=39.56 E-value=60 Score=39.73 Aligned_cols=17 Identities=18% Similarity=0.184 Sum_probs=13.8
Q ss_pred EEEcCCCCcHHHHHHHH
Q 000684 199 ILADEMGLGKTVQSVSM 215 (1352)
Q Consensus 199 ILADEmGLGKTlqaIa~ 215 (1352)
|+.--.|.|||.-|+.+
T Consensus 5 l~tG~pGSGKT~~aV~~ 21 (399)
T PHA00350 5 AIVGRPGSYKSYEAVVY 21 (399)
T ss_pred EEecCCCCchhHHHHHH
Confidence 45567899999999974
No 471
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=39.39 E-value=45 Score=39.69 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=19.7
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCCCcEEE
Q 000684 203 EMGLGKTVQSVSMLGFLQNAQQIPGPFLV 231 (1352)
Q Consensus 203 EmGLGKTlqaIa~l~~L~~~~~~~gp~LI 231 (1352)
-=|.|||.+++|+..++...+ .+..||
T Consensus 10 KGGVGKTT~aaA~A~~lA~~g--~kvLlv 36 (322)
T COG0003 10 KGGVGKTTIAAATAVKLAESG--KKVLLV 36 (322)
T ss_pred CCcccHHHHHHHHHHHHHHcC--CcEEEE
Confidence 348999999999888887654 444444
No 472
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=39.12 E-value=35 Score=36.69 Aligned_cols=64 Identities=22% Similarity=0.343 Sum_probs=41.2
Q ss_pred HHHHHHhc-CCCcEEEEcCCCCcHHHHHHHHHHHHHHhc-------CCCCcEEEEEChhhHHHHHHHHHHHc
Q 000684 186 NFLVNSWR-NDTNVILADEMGLGKTVQSVSMLGFLQNAQ-------QIPGPFLVVVPLSTLSNWAKEFRKWL 249 (1352)
Q Consensus 186 nwL~~~~~-~~~~~ILADEmGLGKTlqaIa~l~~L~~~~-------~~~gp~LIVvP~s~L~nW~~Ef~kw~ 249 (1352)
+|++..+. .|.-++++...|.|||..++.++..+.... ...+++|+|..-....++.+-+..+.
T Consensus 22 ~~li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~ 93 (193)
T PF13481_consen 22 DWLIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALL 93 (193)
T ss_dssp -EEETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHH
T ss_pred ceeECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHh
Confidence 34443333 566688999999999999998887776421 13567888888777767777776665
No 473
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=39.07 E-value=1.2e+02 Score=37.32 Aligned_cols=57 Identities=14% Similarity=0.146 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHH
Q 000684 183 EGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNW 241 (1352)
Q Consensus 183 egvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW 241 (1352)
..++-++.-+..|.-.||+..+|.|||.-++.++..+... ...|++++..--.-.+.
T Consensus 182 ~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~--~g~~v~~fSlEm~~~~l 238 (421)
T TIGR03600 182 PKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALR--EGKPVLFFSLEMSAEQL 238 (421)
T ss_pred hhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECCCCHHHH
Confidence 4455555555666678999999999999999888665422 24578888754333333
No 474
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=38.44 E-value=1.1e+02 Score=32.72 Aligned_cols=51 Identities=22% Similarity=0.308 Sum_probs=31.3
Q ss_pred HHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHh-cCCCCcEEEEEChhhHHHH
Q 000684 187 FLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNA-QQIPGPFLVVVPLSTLSNW 241 (1352)
Q Consensus 187 wL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~-~~~~gp~LIVvP~s~L~nW 241 (1352)
.+...-.....++|.-|+|+||+..|=++ +.. .+..+||+.|--..+-..+
T Consensus 14 ~~~~~a~~~~pVlI~GE~GtGK~~lA~~I----H~~s~r~~~pfi~vnc~~~~~~~ 65 (168)
T PF00158_consen 14 QAKRAASSDLPVLITGETGTGKELLARAI----HNNSPRKNGPFISVNCAALPEEL 65 (168)
T ss_dssp HHHHHTTSTS-EEEECSTTSSHHHHHHHH----HHCSTTTTS-EEEEETTTS-HHH
T ss_pred HHHHHhCCCCCEEEEcCCCCcHHHHHHHH----HHhhhcccCCeEEEehhhhhcch
Confidence 33333456678999999999999865333 222 2346898888777664443
No 475
>PLN03212 Transcription repressor MYB5; Provisional
Probab=38.38 E-value=76 Score=36.07 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHHhhccCcchHHhHhhhhcccccccCCcccccccCCCCC--hhhHHHHHHHHHHHHHhh
Q 000684 937 CGWNQFDDARLLLGIHYHGFGNWENIRLDERLGLTKKIAPVELQHHETFLPR--APNLKERANALLEMELAA 1006 (1352)
Q Consensus 937 ~~W~~eeD~~LL~gI~kyGyG~We~Ir~D~~L~l~~ki~~~~~~~~~~~~p~--a~hL~rR~d~LL~~e~~~ 1006 (1352)
..||++||..||..+.+|| ..|..|..- +|+ ...+..|-..+|++....
T Consensus 79 gpWT~EED~lLlel~~~~G-nKWs~IAk~--------------------LpGRTDnqIKNRWns~LrK~l~r 129 (249)
T PLN03212 79 GGITSDEEDLILRLHRLLG-NRWSLIAGR--------------------IPGRTDNEIKNYWNTHLRKKLLR 129 (249)
T ss_pred CCCChHHHHHHHHHHHhcc-ccHHHHHhh--------------------cCCCCHHHHHHHHHHHHhHHHHh
Confidence 4799999999999999998 679998762 222 457888999888765443
No 476
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=37.82 E-value=90 Score=34.74 Aligned_cols=56 Identities=21% Similarity=0.197 Sum_probs=36.0
Q ss_pred HHHHHHH-HHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHH
Q 000684 183 EGLNFLV-NSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNW 241 (1352)
Q Consensus 183 egvnwL~-~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW 241 (1352)
.++.-++ --+..|..++|+-+.|+|||..+..|+...... ..+.++|.-.....+.
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~---g~~~~~is~e~~~~~i 63 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD---GDPVIYVTTEESRESI 63 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEEccCCHHHH
Confidence 3444444 234456678899999999999998887654432 2466777754444433
No 477
>PRK08006 replicative DNA helicase; Provisional
Probab=37.53 E-value=1.2e+02 Score=38.12 Aligned_cols=61 Identities=15% Similarity=0.107 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHH
Q 000684 183 EGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEF 245 (1352)
Q Consensus 183 egvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef 245 (1352)
..++.+..-+..|.=+|||.-+|.|||.-++.++..+... ...|+++...--...++..-+
T Consensus 212 ~~LD~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~--~g~~V~~fSlEM~~~ql~~Rl 272 (471)
T PRK08006 212 DDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAML--QDKPVLIFSLEMPGEQIMMRM 272 (471)
T ss_pred HHHHHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--cCCeEEEEeccCCHHHHHHHH
Confidence 3455555556666678999999999999988887665432 235788887764455554443
No 478
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=36.75 E-value=91 Score=35.18 Aligned_cols=62 Identities=16% Similarity=0.156 Sum_probs=39.9
Q ss_pred HHHHHHHH-HhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHHHH
Q 000684 183 EGLNFLVN-SWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRK 247 (1352)
Q Consensus 183 egvnwL~~-~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef~k 247 (1352)
.++.-++. -+..|...+++-+.|.|||+.++-|+...... ..+.|+|+-.....+-.+.+..
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~---ge~~lyvs~ee~~~~i~~~~~~ 70 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQM---GEPGIYVALEEHPVQVRRNMAQ 70 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHc---CCcEEEEEeeCCHHHHHHHHHH
Confidence 45555442 23355677889999999999998887654432 3467888765555554444443
No 479
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=36.37 E-value=2.5e+02 Score=29.64 Aligned_cols=53 Identities=15% Similarity=0.269 Sum_probs=33.4
Q ss_pred cCcceEecchhcccCCcchHHHHHHHcccccCeEEEeccCCCCCHHHHHHHHhhcCC
Q 000684 304 IKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDH 360 (1352)
Q Consensus 304 i~w~~lIVDEAHrlKN~~Skl~~aL~~l~~~~rlLLTGTPlqNnl~EL~sLL~fL~p 360 (1352)
-.+++||||=+..+- ..... +..+.....+++..+|-..++.++..++.++..
T Consensus 66 ~~yD~VIiD~pp~~~---~~~~~-~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~ 118 (169)
T cd02037 66 GELDYLVIDMPPGTG---DEHLT-LAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKK 118 (169)
T ss_pred CCCCEEEEeCCCCCc---HHHHH-HHhccCCCeEEEEECCchhhHHHHHHHHHHHHh
Confidence 468999999877652 11111 222234456667668888888888777776653
No 480
>PHA00012 I assembly protein
Probab=36.35 E-value=57 Score=38.77 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=17.0
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHH
Q 000684 199 ILADEMGLGKTVQSVSMLGFLQN 221 (1352)
Q Consensus 199 ILADEmGLGKTlqaIa~l~~L~~ 221 (1352)
++.--+|.|||+.+++-|.....
T Consensus 5 lITGkPGSGKSl~aV~~I~~~L~ 27 (361)
T PHA00012 5 VVTGKLGAGKTLVAVSRIQDKLV 27 (361)
T ss_pred EEecCCCCCchHHHHHHHHHHHH
Confidence 45667899999999986555444
No 481
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=35.82 E-value=85 Score=44.26 Aligned_cols=120 Identities=15% Similarity=0.113 Sum_probs=68.9
Q ss_pred CcHHHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHH-HHHHcCCCeEE
Q 000684 177 LRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKE-FRKWLPTMNVI 255 (1352)
Q Consensus 177 Lr~yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~E-f~kw~p~l~vv 255 (1352)
+.+-|..+|. ..+.++++...-|+|||.+.+.-+..+...+-....+||||=+..-.+..++ +.+-....
T Consensus 2 ~t~~Q~~ai~------~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~--- 72 (1232)
T TIGR02785 2 WTDEQWQAIY------TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKA--- 72 (1232)
T ss_pred CCHHHHHHHh------CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHH---
Confidence 5678988886 3678899999999999999887666555433222458999887666554333 22211000
Q ss_pred EEEcCchhHHHHHHHhhhccccCCCCccccEEEecHHHHHh----hHhhhhccCcceEecchhcc
Q 000684 256 VYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLK----DKAVLSKIKWNYLMVDEAHR 316 (1352)
Q Consensus 256 vy~G~~~~r~~i~~~e~~~~~~~~~~~kf~VlItTye~l~~----d~~~L~~i~w~~lIVDEAHr 316 (1352)
+...+..+...++... -...-|+|++.+.. .....-.+...+=|.||+..
T Consensus 73 -~~~~p~~~~L~~q~~~----------~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 73 -LQQEPNSKHLRRQLAL----------LNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred -HhcCchhHHHHHHHhh----------ccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 0011122222233221 12456888877653 23333445666777887654
No 482
>PRK10689 transcription-repair coupling factor; Provisional
Probab=35.78 E-value=1.5e+02 Score=41.34 Aligned_cols=95 Identities=11% Similarity=0.059 Sum_probs=65.6
Q ss_pred hcchhHHHHHHHHHhhhcCCeEEEEecchhHHHHHHHHHHh----cCCcEEEEeCCCCHHHHHHHHHHhcCCCCCCcEEE
Q 000684 491 SSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSY----KGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFL 566 (1352)
Q Consensus 491 ~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~----~g~~~~rldGs~~~~eR~~~Id~Fn~~~s~~~vfL 566 (1352)
.+||..+....+-.....|.+|||.+..+..+..+...+.. .++.+..+.|..+..++..++.....+..+ ++
T Consensus 631 GsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~d---IV 707 (1147)
T PRK10689 631 GFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKID---IL 707 (1147)
T ss_pred CcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCC---EE
Confidence 57888654433333345788999999988877766665543 356777899999999999999888764333 56
Q ss_pred eecCC-CccCCCCCccCEEEEcC
Q 000684 567 LSTRA-GGLGINLATADTVIIFD 588 (1352)
Q Consensus 567 LSTrA-gg~GINL~~AdtVIi~D 588 (1352)
+.|.. ....+++.....||+=.
T Consensus 708 VgTp~lL~~~v~~~~L~lLVIDE 730 (1147)
T PRK10689 708 IGTHKLLQSDVKWKDLGLLIVDE 730 (1147)
T ss_pred EECHHHHhCCCCHhhCCEEEEec
Confidence 66653 34456677777777633
No 483
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=35.63 E-value=1e+02 Score=35.15 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=23.0
Q ss_pred EcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEE--EChhhH
Q 000684 201 ADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVV--VPLSTL 238 (1352)
Q Consensus 201 ADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIV--vP~s~L 238 (1352)
.--=|.|||..|.++...|...+ .++|+| +|.+.|
T Consensus 8 s~kGGvG~TTltAnLA~aL~~~G---~~VlaID~dpqN~L 44 (243)
T PF06564_consen 8 SPKGGVGKTTLTANLAWALARLG---ESVLAIDLDPQNLL 44 (243)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCC---CcEEEEeCCcHHHH
Confidence 33449999999998888887643 345554 344433
No 484
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=35.58 E-value=57 Score=35.71 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=27.1
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChh
Q 000684 194 NDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLS 236 (1352)
Q Consensus 194 ~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s 236 (1352)
...+++++-.+|.|||....+++..+........-.|+|+...
T Consensus 37 ~~~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k 79 (205)
T PF01580_consen 37 KNPHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK 79 (205)
T ss_dssp GS-SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred CCceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC
Confidence 3458999999999999998888877776433344456665543
No 485
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=34.90 E-value=2.2e+02 Score=35.43 Aligned_cols=42 Identities=19% Similarity=0.384 Sum_probs=27.7
Q ss_pred cCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhh
Q 000684 193 RNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLST 237 (1352)
Q Consensus 193 ~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~ 237 (1352)
..+..+++.-|.|+|||..|-++-.. .....+||++|--..+
T Consensus 159 ~~~~~vli~Ge~GtGK~~lA~~ih~~---s~~~~~~~i~i~c~~~ 200 (469)
T PRK10923 159 RSSISVLINGESGTGKELVAHALHRH---SPRAKAPFIALNMAAI 200 (469)
T ss_pred ccCCeEEEEeCCCCcHHHHHHHHHhc---CCCCCCCeEeeeCCCC
Confidence 46678999999999999765433221 2234578877765444
No 486
>PRK06321 replicative DNA helicase; Provisional
Probab=34.47 E-value=1.3e+02 Score=37.75 Aligned_cols=61 Identities=16% Similarity=0.161 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHH
Q 000684 183 EGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEF 245 (1352)
Q Consensus 183 egvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef 245 (1352)
..++-+..-|..|.=+|||.-+|.|||.-++.++..+... ...|++++..--.-.++...+
T Consensus 214 ~~LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~--~g~~v~~fSLEMs~~ql~~Rl 274 (472)
T PRK06321 214 IDLDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQ--NRLPVGIFSLEMTVDQLIHRI 274 (472)
T ss_pred HHHHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHh--cCCeEEEEeccCCHHHHHHHH
Confidence 3455556556667778999999999999888876655422 235788887655445554443
No 487
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=34.43 E-value=24 Score=38.33 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=20.4
Q ss_pred CcceEecchhcccCCcchHHHHHHHcc-cccCeEEEeccC
Q 000684 305 KWNYLMVDEAHRLKNSEAQLYTTLSEF-STKNKLLITGTP 343 (1352)
Q Consensus 305 ~w~~lIVDEAHrlKN~~Skl~~aL~~l-~~~~rlLLTGTP 343 (1352)
..++||||||=-+ +- -.|..+ ....++++|.|-
T Consensus 90 ~~DlliVDEAAaI--p~----p~L~~ll~~~~~vv~stTi 123 (177)
T PF05127_consen 90 QADLLIVDEAAAI--PL----PLLKQLLRRFPRVVFSTTI 123 (177)
T ss_dssp --SCEEECTGGGS---H----HHHHHHHCCSSEEEEEEEB
T ss_pred CCCEEEEechhcC--CH----HHHHHHHhhCCEEEEEeec
Confidence 3589999999877 22 223333 455688888774
No 488
>CHL00195 ycf46 Ycf46; Provisional
Probab=34.30 E-value=59 Score=41.00 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=27.6
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhH
Q 000684 194 NDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTL 238 (1352)
Q Consensus 194 ~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L 238 (1352)
...+++|.-..|+|||..|=++...+ .-|++.|-+..+.
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~------~~~~~~l~~~~l~ 296 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDW------QLPLLRLDVGKLF 296 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh------CCCEEEEEhHHhc
Confidence 34578999999999999886665433 3477777655433
No 489
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=33.82 E-value=1.1e+02 Score=34.62 Aligned_cols=50 Identities=12% Similarity=0.108 Sum_probs=34.4
Q ss_pred cCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHHHHHHH
Q 000684 193 RNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEF 245 (1352)
Q Consensus 193 ~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~nW~~Ef 245 (1352)
..+.-.+|..+.|.|||..++.++..+... ..+.+.|+......+-.+.+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~---g~~~~yi~~e~~~~~~~~~~ 71 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQN---GYSVSYVSTQLTTTEFIKQM 71 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhC---CCcEEEEeCCCCHHHHHHHH
Confidence 456678899999999999988888766542 24567777654444433333
No 490
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=33.69 E-value=2e+02 Score=38.05 Aligned_cols=59 Identities=20% Similarity=0.210 Sum_probs=36.7
Q ss_pred CCcHHHHHHHHHHHHHhcCCC-cEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEECh
Q 000684 176 KLRDYQLEGLNFLVNSWRNDT-NVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPL 235 (1352)
Q Consensus 176 ~Lr~yQlegvnwL~~~~~~~~-~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~ 235 (1352)
.+..-|.+.+.-+...+..+. -.+|..+=|=|||..+--.+..+.+... ...++|.+|.
T Consensus 211 ~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~-~~~iiVTAP~ 270 (758)
T COG1444 211 CLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAG-SVRIIVTAPT 270 (758)
T ss_pred hcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcC-CceEEEeCCC
Confidence 455667777766666655555 5677888999999764322222222221 4577888886
No 491
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=33.61 E-value=1.2e+02 Score=36.03 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=16.5
Q ss_pred CCCcHHHHHHHHHHHHHHh
Q 000684 204 MGLGKTVQSVSMLGFLQNA 222 (1352)
Q Consensus 204 mGLGKTlqaIa~l~~L~~~ 222 (1352)
=|+|||=.++.++.+|...
T Consensus 39 GGTGKTP~v~~La~~l~~~ 57 (311)
T TIGR00682 39 GGTGKTPVVVWLAELLKDR 57 (311)
T ss_pred CCcChHHHHHHHHHHHHHC
Confidence 3999999999999988764
No 492
>PRK08939 primosomal protein DnaI; Reviewed
Probab=33.52 E-value=1.3e+02 Score=35.66 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=24.5
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHHh
Q 000684 194 NDTNVILADEMGLGKTVQSVSMLGFLQNA 222 (1352)
Q Consensus 194 ~~~~~ILADEmGLGKTlqaIa~l~~L~~~ 222 (1352)
.+.|.+|.-.+|+|||..+.|++..+...
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~ 183 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKK 183 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34578899999999999999999888753
No 493
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=33.44 E-value=54 Score=39.21 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHH
Q 000684 185 LNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFL 219 (1352)
Q Consensus 185 vnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L 219 (1352)
..||..+...+.+++++-.+|+|||...-+++.++
T Consensus 150 ~~~L~~~v~~~~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 150 KEFLEHAVISKKNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHhhC
Confidence 34555556688999999999999998766666544
No 494
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=33.30 E-value=2.3e+02 Score=37.75 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHH
Q 000684 198 VILADEMGLGKTVQSVSMLGFLQ 220 (1352)
Q Consensus 198 ~ILADEmGLGKTlqaIa~l~~L~ 220 (1352)
+.|....|.|||.++.-+...+.
T Consensus 188 i~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 188 LALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred EEEECCCCCcHHHHHHHHHhhHH
Confidence 46889999999988766666553
No 495
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=33.25 E-value=3.2e+02 Score=34.30 Aligned_cols=36 Identities=17% Similarity=0.088 Sum_probs=23.8
Q ss_pred CCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHHH
Q 000684 204 MGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSN 240 (1352)
Q Consensus 204 mGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~n 240 (1352)
.|+|||+.-..=++.|+. .+....++|-+=+.+|.+
T Consensus 185 AGSGKT~~La~Kaa~lh~-knPd~~I~~Tfftk~L~s 220 (660)
T COG3972 185 AGSGKTELLAHKAAELHS-KNPDSRIAFTFFTKILAS 220 (660)
T ss_pred cCCCchhHHHHHHHHHhc-CCCCceEEEEeehHHHHH
Confidence 499999875555555554 445556888887766643
No 496
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=32.54 E-value=1.9e+02 Score=34.50 Aligned_cols=54 Identities=13% Similarity=0.151 Sum_probs=38.0
Q ss_pred HHHHHHHH--HhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhHH
Q 000684 183 EGLNFLVN--SWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLS 239 (1352)
Q Consensus 183 egvnwL~~--~~~~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L~ 239 (1352)
.+++-++. -+-.+.-+.++-+.|+|||..++.++...... .+++++|.+...+.
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~---g~~~vyId~E~~~~ 96 (325)
T cd00983 41 LSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKL---GGTVAFIDAEHALD 96 (325)
T ss_pred HHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCCEEEECccccHH
Confidence 45666653 33445556789999999999998887666542 46788888876664
No 497
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=32.53 E-value=1.3e+02 Score=37.25 Aligned_cols=58 Identities=16% Similarity=0.070 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHH-HHHhcCCCCcEEEEEChhhHHHHHH
Q 000684 180 YQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGF-LQNAQQIPGPFLVVVPLSTLSNWAK 243 (1352)
Q Consensus 180 yQlegvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~-L~~~~~~~gp~LIVvP~s~L~nW~~ 243 (1352)
.++..+..|+....++.|+|+.-..|+|||-.+.++..+ ....+ ..+++..++.+-..
T Consensus 194 ~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~~~~a~~sG------~f~T~a~Lf~~L~~ 252 (449)
T TIGR02688 194 QKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLSPYVILISG------GTITVAKLFYNIST 252 (449)
T ss_pred HHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC------CcCcHHHHHHHHHH
Confidence 445555555555678999999999999999888776555 33322 45566666655444
No 498
>KOG0442 consensus Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 [Replication, recombination and repair]
Probab=32.37 E-value=2.6e+02 Score=37.08 Aligned_cols=43 Identities=19% Similarity=0.328 Sum_probs=33.4
Q ss_pred hhhcchhHHHHHHHHH-hhh---------cCCeEEEEecchhHHHHHHHHHHh
Q 000684 489 ILSSGKLVILDKLLVR-LHE---------TKHRVLIFSQMVRMLDILAEYMSY 531 (1352)
Q Consensus 489 i~~SgKl~~L~kLL~~-l~~---------~g~KVLIFSq~~~~ldiL~d~L~~ 531 (1352)
.....|..+|.++|.+ ... ....|||-|.+.++.-.|.+||..
T Consensus 348 lE~~pKw~~Ltdil~~e~~~~~~~~~~~~~~~~Vlv~c~dertC~ql~d~lt~ 400 (892)
T KOG0442|consen 348 LEECPKWEVLTDILFKEIEHEKERADRSNDQGSVLVACSDERTCAQLRDYLTL 400 (892)
T ss_pred cccCCCcHHHHHHHHhhhhhHHHHhhhcCCCCceEEEeccchhHHHHHHHHhc
Confidence 3457899999999832 211 234699999999999999999985
No 499
>PRK13531 regulatory ATPase RavA; Provisional
Probab=32.34 E-value=60 Score=40.71 Aligned_cols=38 Identities=11% Similarity=0.101 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHH
Q 000684 182 LEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFL 219 (1352)
Q Consensus 182 legvnwL~~~~~~~~~~ILADEmGLGKTlqaIa~l~~L 219 (1352)
.+.|.-++.....+.+++|.+++|+|||..|-++....
T Consensus 26 e~vI~lll~aalag~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 26 SHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred HHHHHHHHHHHccCCCEEEECCCChhHHHHHHHHHHHh
Confidence 34555555555689999999999999999887776544
No 500
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=32.17 E-value=89 Score=37.82 Aligned_cols=54 Identities=19% Similarity=0.269 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhc----CCCcEEEEcCCCCcHHHHHHHHHHHHHHhcCCCCcEEEEEChhhH
Q 000684 181 QLEGLNFLVNSWR----NDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTL 238 (1352)
Q Consensus 181 QlegvnwL~~~~~----~~~~~ILADEmGLGKTlqaIa~l~~L~~~~~~~gp~LIVvP~s~L 238 (1352)
..+++.-++.+.. .|+..+|+.+.|+|||..|+++...| +..-||..++-..+.
T Consensus 32 AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eL----G~~~PF~~isgSEiy 89 (398)
T PF06068_consen 32 AREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKEL----GEDVPFVSISGSEIY 89 (398)
T ss_dssp HHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHC----TTTS-EEEEEGGGG-
T ss_pred HHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHh----CCCCCeeEcccceee
Confidence 4445444444443 45678899999999999998887655 345688888876443
Done!