Query 000684
Match_columns 1352
No_of_seqs 592 out of 3064
Neff 6.7
Searched_HMMs 29240
Date Tue Mar 26 17:06:30 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000684.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_455-459//hhsearch_pdb/000684hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 1.0 1 1 1116.1 44.7 727 3-741 61-800 (800)
2 1z3i_X Similar to RAD54-like; 1.0 1 1 685.0 38.1 491 174-671 53-573 (644)
3 1z63_A Helicase of the SNF2/RA 1.0 1 1 603.3 40.4 462 169-670 31-497 (500)
4 3dmq_A RNA polymerase-associat 1.0 1 1 453.3 33.3 426 174-640 151-634 (968)
5 1wp9_A ATP-dependent RNA helic 1.0 1 1 387.0 32.4 431 174-638 7-492 (494)
6 4a2q_A RIG-I, retinoic acid in 1.0 1 1 366.3 22.5 580 13-644 87-771 (797)
7 2fwr_A DNA repair protein RAD2 1.0 1 1 356.3 25.6 377 172-638 89-471 (472)
8 1z5z_A Helicase of the SNF2/RA 1.0 1 1 354.9 21.7 257 393-671 11-269 (271)
9 2xb0_X Chromo domain-containin 1.0 1 1 340.4 17.4 189 816-1008 4-265 (270)
10 4a2w_A RIG-I, retinoic acid in 1.0 1 1 339.0 32.2 427 174-644 246-771 (936)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=1116.10 Aligned_cols=727 Identities=46% Similarity=0.797 Sum_probs=636.0
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHH-H--HHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 88899989985269997349753212324612220220047999897666576-6--42003884677421012231067
Q 000684 3 HLFDSEPDWNEMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYAKKVVED-V--RFRKMVSREEIELNDVSKEMDLD 79 (1352)
Q Consensus 3 ~~~d~~~~~~~~eyLVKWkg~S~~H~tWes~~~L~~~~~~kk~~n~~kk~~~~-~--~~~~~~~~e~~e~~~~~~e~~~~ 79 (1352)
.+++...+++++||||||||+||+||||||+++|..++|.+++.||+|+.... . +..+..++++.+.+++.+++..+
T Consensus 61 ~~~~~~~~~~~~eylvKWkg~s~~hntWe~~e~L~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~e~~~~~~e~~~~ 140 (800)
T 3mwy_W 61 TVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFIIEDQQVRLDPYVTAEDIEIMDMERERRLD 140 (800)
T ss_dssp CSCCHHHHHHHCEEEEECSSSCTTSCEEECHHHHCSCBTTHHHHHHHHHHTHHHHHHTCSTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCEEEEEEECCCCEEECCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 67676788676279999688611105413878774341579999999986327788751899987888887566654200
Q ss_pred HHHHCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHCCHHHHHHHHC
Q ss_conf 7421474454344201578999843257883289996334434421133-699999999999998862062025653100
Q 000684 80 IIKQNSQVERIIADRISKDSSGNVTQEYLVKWKGLSYAEATWEKDEIID-FAQDAIDEYKAREAAMAEQGKMVDLQRKKG 158 (1352)
Q Consensus 80 ~~~~~~~veRIi~~~~~~~~~~~~~~~YLVKW~~L~y~~~TWE~~~~i~-~~~~~i~~y~~r~~~~~~~~~~~~~~r~~~ 158 (1352)
.+++|.+|||||+++....+.+....+|||||++|+|++||||....+. ..+..++.|..|......+...... ...
T Consensus 141 ~~~~~~~veRii~~~~~~~~~~~~~~~yLvKW~~L~y~~~tWe~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~--~~~ 218 (800)
T 3mwy_W 141 EFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQNRENSKILPQYSSNY--TSQ 218 (800)
T ss_dssp HHTTTTCEEEECCCCCEECTTSCEECBCCEEETTSCSTTCBCCBHHHHTTTCHHHHHHHHHTTTCTTCSTTCCCC--CSC
T ss_pred CCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCC--CCC
T ss_conf 011135346898641134678988659999815787342643363443333199999999763134477510103--455
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECHHHH
Q ss_conf 12233334689745899886999999999998713999579991999819999999999999815999839999771429
Q 000684 159 KASLRKLDEQPEWLRGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTL 238 (1352)
Q Consensus 159 ~~~~~~~~~~P~~~~g~~Lr~yQleginwL~~~~~~~~~~ILADEmGLGKTiqaIa~l~~L~~~~~~~gp~LIVvP~s~L 238 (1352)
...+..+..+|.++.+++|||||++|++||+..|.++.+|||||+||||||+|+|+++.++.......+|+|||||.+++
T Consensus 219 ~~~~~~~~~~p~~~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll 298 (800)
T 3mwy_W 219 RPRFEKLSVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTM 298 (800)
T ss_dssp CCCCCCCSSCCTTCCSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCHHH
T ss_conf 77640025699865799758999999999999851389989982787532999999999999860779988999880389
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCC--CCCCCCCEEEECHHHHHHHHHHHHCCCCCEEECCHHCC
Q ss_conf 9999999988699809999768414899998754024457--99865459995289999619656005741373010000
Q 000684 239 SNWAKEFRKWLPTMNVIVYVGTRASREVCQQYEFYNDKKV--GRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHR 316 (1352)
Q Consensus 239 ~qW~~Ef~kw~p~l~vvvy~G~~~~r~~i~~~e~~~~~~~--~~~~kf~ViItTye~l~~d~~~L~~i~w~~IIIDEAHr 316 (1352)
.||.+||.+|+|++++++|+|+...+..++.++++..... ....+++|+||||+++..+...|..+.|++|||||||+
T Consensus 299 ~qW~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~ 378 (800)
T 3mwy_W 299 PAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHR 378 (800)
T ss_dssp HHHHHHHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGG
T ss_pred HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHCCCCCEEEHHHHHH
T ss_conf 99999999977996499982777778898887762263001344566788990699998649998337732564134444
Q ss_pred CCCCCHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHH
Q ss_conf 48942399999971444675887336788998999999831077898993589997303465457899999984200212
Q 000684 317 LKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHIL 396 (1352)
Q Consensus 317 lKN~~S~l~~~L~~l~~~~RllLTGTPlqNnl~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~L~~~L~p~il 396 (1352)
+||..+++++++..+.+.+||+|||||+||++.|||+|++||.|+.|.....|. |..........+..|+..+.|+++
T Consensus 379 lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~--~~~~~~~~~~~~~~L~~~l~p~~l 456 (800)
T 3mwy_W 379 LKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEID--FENQDEEQEEYIHDLHRRIQPFIL 456 (800)
T ss_dssp GCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC-----------CCTTHHHHHHHHHHHTTGGGEE
T ss_pred HCCCHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHC--CCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 147101999999975224389722785779999999999985866367434423--222314689999999999757775
Q ss_pred HHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC--
Q ss_conf 335575520399838999981379889999999999847863103468631499999999773088533222358999--
Q 000684 397 RRIIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYG-- 474 (1352)
Q Consensus 397 RR~k~dv~~~LP~k~e~iv~v~lS~~Qk~~Y~~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~-- 474 (1352)
||++.++...||++.+.+++|+|++.|+.+|+.++.++...+..+..+....++++++.|++||+||+++...+....
T Consensus 457 RR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~ 536 (800)
T 3mwy_W 457 RRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQK 536 (800)
T ss_dssp ECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCC
T ss_pred HHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHH
T ss_conf 32087664316882799997079999999999999999999861035454469999999998735865423557899886
Q ss_pred -CCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH
Q ss_conf -9987785125799966011367999999986206972899964214899999998855990999948998999999999
Q 000684 475 -GDTSINDTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMD 553 (1352)
Q Consensus 475 -~~~~~~~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rLdG~~~~~~R~~~Id 553 (1352)
+............++..|+|+.+|.++|..+...|+|||||||++.++++|+++|...|+.+.+++|+++..+|+.+|+
T Consensus 537 ~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~ 616 (800)
T 3mwy_W 537 FGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISID 616 (800)
T ss_dssp C----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH
T ss_conf 15665557788887664276999999999997527981899963599999999999867997899969999999999999
Q ss_pred HHCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 85199999828995048876677878667899819999943399783210014998618999992599899999999999
Q 000684 554 HFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKK 633 (1352)
Q Consensus 554 ~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQ~k~V~VyrLvt~~TiEE~Il~ra~~ 633 (1352)
+|+++++..++||+||+|||+||||++|++||+||++|||+.++||+||+||+||+++|.||+|++++|+||+|++++.+
T Consensus 617 ~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~ 696 (800)
T 3mwy_W 617 HFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARK 696 (800)
T ss_dssp TTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHH
T ss_pred HHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHH
T ss_conf 96089998259997454456787760163689946878811689999998855898637999986199899999999999
Q ss_pred HHHHHHHHHCCCCCCCH-HHHHHHCCHHHHHHHHHCCHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHC---
Q ss_conf 87357998700111241-36631005246999984036765201576278851106889999997523446553110---
Q 000684 634 KMVLDHLVIQKLNAEGS-WRRKKQRKGNELSAILRFGAEELFKEDRNDEESKKRLLGMDIDEILERAEKVEEKEAEG--- 709 (1352)
Q Consensus 634 K~~L~~~Vi~~~~~~g~-~~~~~~~~~~el~~ll~~ga~~l~~~~~~~~~~~~~~~~~did~il~~~~~~~~~~~~~--- 709 (1352)
|+.|+++||+.+..++. .........+||.+||+||++++|+..++ ..++.++|||+||++++...+....+
T Consensus 697 K~~l~~~vi~~~~~~~~~~~~~~~~~~~el~~ll~~g~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 772 (800)
T 3mwy_W 697 KMILEYAIISLGVTDGNKYTKKNEPNAGELSAILKFGAGNMFTATDN----QKKLEDLNLDDVLNHAEDHVTTPDLGESH 772 (800)
T ss_dssp HTTSCC----------------CCCCHHHHHHHHSSCSSSSCCSHHH----HHHHHTCCHHHHHHHCEECCCSCCCCCCE
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHCCCC----CCCCCCCCHHHHHHHHHHCCCCCCCCCCC
T ss_conf 88899999703756653211234789999999997165765114576----43254057999987434324464655656
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 11111112331023456788842101268906
Q 000684 710 EAGNELLSAFKVANFCGAEDDGSFWSRWIKPE 741 (1352)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 741 (1352)
.+|++++++|+|++|..+ .+|++|||++
T Consensus 773 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 800 (800)
T 3mwy_W 773 LGGEEFLKQFEVTDYKAD----IDWDDIIPEE 800 (800)
T ss_dssp ESCHHHHHTTC---------------------
T ss_pred CCHHHHHHHCEEEECCCC----CCHHHCCCCC
T ss_conf 556889861200302368----9878718898
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=685.05 Aligned_cols=491 Identities=32% Similarity=0.510 Sum_probs=402.5
Q ss_pred CCCCCHHHHHHHHHHHHHH-----CCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCC----CCCEEEEECHHHHHHHHHH
Q ss_conf 9988699999999999871-----399957999199981999999999999981599----9839999771429999999
Q 000684 174 GGKLRDYQLEGLNFLVNSW-----RNDTNVILADEMGLGKTVQSVSMLGFLQNAQQI----PGPFLVVVPLSTLSNWAKE 244 (1352)
Q Consensus 174 g~~Lr~yQleginwL~~~~-----~~~~~~ILADEmGLGKTiqaIa~l~~L~~~~~~----~gp~LIVvP~s~L~qW~~E 244 (1352)
...|||||++|++||+.++ ..+.+|||||+||+|||+|+|+++..+...... .+++|||||.+++.||.+|
T Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~qW~~E 132 (644)
T 1z3i_X 53 SKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNE 132 (644)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHH
T ss_conf 00351999999999998423354458887596107874299999999999997486656777857999658998879999
Q ss_pred HHHHCCC-CEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECHHHHHHHHHHHHCCCCCEEECCHHCCCCCCCHH
Q ss_conf 9988699-809999768414899998754024457998654599952899996196560057413730100004894239
Q 000684 245 FRKWLPT-MNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQ 323 (1352)
Q Consensus 245 f~kw~p~-l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~ViItTye~l~~d~~~L~~i~w~~IIIDEAHrlKN~~S~ 323 (1352)
|.+|+|. +.++.++|+...........+... .+....++|+|+||+++..+...+....|++||+||||++||..++
T Consensus 133 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ikn~~~~ 210 (644)
T 1z3i_X 133 VGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQ--QGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQ 210 (644)
T ss_dssp HHHHHGGGCCEEEECSSCHHHHHHHHHHHHCC--CSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCTTCHH
T ss_pred HHHHCCCCEEEEEEECCCHHHHHHHHHHHHHH--CCCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEEECCEECCCHHHH
T ss_conf 99975887259998089889999999999873--3777787579963899876578750488657998786224780459
Q ss_pred HHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCC-------------CCHHHHHHHHHH
Q ss_conf 9999971444675887336788998999999831077898993589997303465-------------457899999984
Q 000684 324 LYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSS-------------FNENELANLHME 390 (1352)
Q Consensus 324 l~~~L~~l~~~~RllLTGTPlqNnl~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~-------------~~~~~~~~L~~~ 390 (1352)
.++++..+.+.+||+|||||+||++.|||++++|+.|+.|++...|...|..+.. .....+..|+.+
T Consensus 211 ~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~ 290 (644)
T 1z3i_X 211 TYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISI 290 (644)
T ss_dssp HHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999855567379984673458899999999861887689999999863261541677677888999999999999999
Q ss_pred HCCHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 20021233557552039983899998137988999999999984786310346863149999999977308853322235
Q 000684 391 LRPHILRRIIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESAD 470 (1352)
Q Consensus 391 L~p~ilRR~k~dv~~~LP~k~e~iv~v~lS~~Qk~~Y~~il~~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e 470 (1352)
+.|+++||++.++...||++.+.+++|+|++.|+.+|+.++..................+..++.||++||||+++....
T Consensus 291 l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~ 370 (644)
T 1z3i_X 291 VNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKC 370 (644)
T ss_dssp HHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 88999871087676427983699998379989999999999989999987627621459999999999957999888887
Q ss_pred ----CCCCCCCC--CCCHHHHHHHHHHCCHHHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf ----89999987--78512579996601136799999998620-697289996421489999999885599099994899
Q 000684 471 ----HGYGGDTS--INDTSKLERIILSSGKLVILDKLLVRLHE-TKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGST 543 (1352)
Q Consensus 471 ----~~~~~~~~--~~~~~~l~~li~~SgKl~~L~kLL~~l~~-~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rLdG~~ 543 (1352)
........ .............|+|+.+|+.++..+.. .++|+||||+++.++++|+.+|...|+.+.+++|++
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~ 450 (644)
T 1z3i_X 371 LTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTM 450 (644)
T ss_dssp HHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred HCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 41540035577645421110005701174899999999998646998799998059999999999997799789983999
Q ss_pred CHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCCH
Q ss_conf 89999999998519999982899504887667787866789981999994339978321001499861899999259989
Q 000684 544 KAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSV 623 (1352)
Q Consensus 544 ~~~~R~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQ~k~V~VyrLvt~~Ti 623 (1352)
+..+|+.++++|+++.+..++||+||++||+||||+.|++||+||++|||..+.||+||+||+||+++|.||+|++.+|+
T Consensus 451 ~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ti 530 (644)
T 1z3i_X 451 SIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTI 530 (644)
T ss_dssp CHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSH
T ss_pred CHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCH
T ss_conf 99999999999639999967999844556678465238989997999981379999884032289872699998879889
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHCCHH
Q ss_conf 999999999987357998700111241366310052469999840367
Q 000684 624 EEDILERAKKKMVLDHLVIQKLNAEGSWRRKKQRKGNELSAILRFGAE 671 (1352)
Q Consensus 624 EE~Il~ra~~K~~L~~~Vi~~~~~~g~~~~~~~~~~~el~~ll~~ga~ 671 (1352)
||+|++++..|+.|...|++...... ...+.+||.+|+.++..
T Consensus 531 Ee~i~~~~~~K~~l~~~v~~~~~~~~-----~~~~~~~l~~Lf~~~~~ 573 (644)
T 1z3i_X 531 EEKILQRQAHKKALSSCVVDEEQDVE-----RHFSLGELRELFSLNEK 573 (644)
T ss_dssp HHHHHHHHHHHHHTSCCCCSCSSSCC-----CSSCHHHHHHHTCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHH-----CCCCHHHHHHHHCCCCC
T ss_conf 99999999999999999856860543-----37899999998678987
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=1.00 E-value=1 Score=603.26 Aligned_cols=462 Identities=28% Similarity=0.498 Sum_probs=398.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHH
Q ss_conf 97458998869999999999987139995799919998199999999999998159998399997714299999999988
Q 000684 169 PEWLRGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRKW 248 (1352)
Q Consensus 169 P~~~~g~~Lr~yQleginwL~~~~~~~~~~ILADEmGLGKTiqaIa~l~~L~~~~~~~gp~LIVvP~s~L~qW~~Ef~kw 248 (1352)
|..+. .+|+|||.+|++|+...+..+.++||||+||+|||+++++++..+... ...+++|||||.+++.||.+||.+|
T Consensus 31 p~~~~-~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~-~~~~~~LIv~P~~l~~qw~~e~~~~ 108 (500)
T 1z63_A 31 PYNIK-ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKE-NELTPSLVICPLSVLKNWEEELSKF 108 (500)
T ss_dssp CCSCS-SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHT-TCCSSEEEEECSTTHHHHHHHHHHH
T ss_pred CHHHH-CCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHC-CCCCCEEEECCHHHHHHHHHHHHHH
T ss_conf 83320-033699999999999974179988998089973899999999988755-8999789990389999999999997
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECHHHHHHHHHHHHCCCCCEEECCHHCCCCCCCHHHHHHH
Q ss_conf 69980999976841489999875402445799865459995289999619656005741373010000489423999999
Q 000684 249 LPTMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTL 328 (1352)
Q Consensus 249 ~p~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~ViItTye~l~~d~~~L~~i~w~~IIIDEAHrlKN~~S~l~~~L 328 (1352)
+|.+.+.+++|.... .....++|+|+||+.+..+.. +....|++||+||||+++|..++.++++
T Consensus 109 ~~~~~v~~~~g~~~~---------------~~~~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDEaH~~kn~~~~~~~~l 172 (500)
T 1z63_A 109 APHLRFAVFHEDRSK---------------IKLEDYDIILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTKIFKAV 172 (500)
T ss_dssp CTTSCEEECSSSTTS---------------CCGGGSSEEEEEHHHHTTCHH-HHTCCEEEEEEETGGGGSCTTSHHHHHH
T ss_pred CCCCEEEEEECCCHH---------------CCCCCCCEEEEEHHHHHCCCH-HCCCCCCEEEEECCCCCCCHHHHHHHHH
T ss_conf 799559997267021---------------003577689963799726302-1178728799808410178768999999
Q ss_pred HCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCC-CCHHHHHHHHHHHCCHHHHHHHHH--HHC
Q ss_conf 71444675887336788998999999831077898993589997303465-457899999984200212335575--520
Q 000684 329 SEFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSS-FNENELANLHMELRPHILRRIIKD--VEK 405 (1352)
Q Consensus 329 ~~l~~~~RllLTGTPlqNnl~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~-~~~~~~~~L~~~L~p~ilRR~k~d--v~~ 405 (1352)
..+.+.++|+|||||++|++.|||++++|+.|+.|++...|...|..... ........|+..+.|+++||++.+ +..
T Consensus 173 ~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~ 252 (500)
T 1z63_A 173 KELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIIN 252 (500)
T ss_dssp HTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHT
T ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHEEEECCCCCCHHH
T ss_conf 96004718997467777999999999998587757998999998525111466889999999976674550255424112
Q ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 39983899998137988999999999984786310346-86314999999997730885332223589999987785125
Q 000684 406 SLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVR-GNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDTSK 484 (1352)
Q Consensus 406 ~LP~k~e~iv~v~lS~~Qk~~Y~~il~~~~~~l~~~~~-~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~~~ 484 (1352)
.||++.+..++++|++.|..+|+.+.......+..... .....++..++.|+++|+||+++...+.
T Consensus 253 ~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~------------- 319 (500)
T 1z63_A 253 DLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQ------------- 319 (500)
T ss_dssp TSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCC-------------
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHCCCCC-------------
T ss_conf 2999758999818999999999999999999998642321067999999999988179988438520-------------
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 799966011367999999986206972899964214899999998855-9909999489989999999998519999982
Q 000684 485 LERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYK-GFQFQRLDGSTKAELRHQAMDHFNAPGSEDF 563 (1352)
Q Consensus 485 l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~-g~~~~rLdG~~~~~~R~~~Id~Fn~~~s~~~ 563 (1352)
.+..|+|+..+.+++..+...++|+||||+++.+++.|..+|... |+.+.+++|+++..+|+.++++|++++. ..
T Consensus 320 ---~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~-~~ 395 (500)
T 1z63_A 320 ---SVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPS-VK 395 (500)
T ss_dssp ---CSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTT-CC
T ss_pred ---HHHCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCC-CC
T ss_conf ---11115529999999999872688689997218899999999988538876999799999999999999608999-87
Q ss_pred EEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 89950488766778786678998199999433997832100149986189999925998999999999998735799870
Q 000684 564 CFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQ 643 (1352)
Q Consensus 564 vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQ~k~V~VyrLvt~~TiEE~Il~ra~~K~~L~~~Vi~ 643 (1352)
++|++|+++|+||||+.|++||+||++|||..+.||+||+||+||+++|.||+|++++|+||+|++++..|..+...+++
T Consensus 396 vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~l~~~~~~ 475 (500)
T 1z63_A 396 FIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIIS 475 (500)
T ss_dssp CCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSSSSSSGGG
T ss_pred EEEEECCCCCCCCCHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 79995333557774455888999589989545899999888738987069999774898999999999999999999860
Q ss_pred CCCCCCHHHHHHHCCHHHHHHHHHCCH
Q ss_conf 011124136631005246999984036
Q 000684 644 KLNAEGSWRRKKQRKGNELSAILRFGA 670 (1352)
Q Consensus 644 ~~~~~g~~~~~~~~~~~el~~ll~~ga 670 (1352)
..+.. ......+||..++.+..
T Consensus 476 ~~~~~-----~~~~~~~~l~~l~~~~~ 497 (500)
T 1z63_A 476 SGDSW-----ITELSTEELRKVIELSV 497 (500)
T ss_dssp STTGG-----GGSSCHHHHHHHHSCCC
T ss_pred CCCCH-----HCCCCHHHHHHHHCCCC
T ss_conf 68502-----11599999999964688
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=1.00 E-value=1 Score=453.31 Aligned_cols=426 Identities=20% Similarity=0.243 Sum_probs=326.4
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHCCCCE
Q ss_conf 99886999999999998713999579991999819999999999999815999839999771429999999998869980
Q 000684 174 GGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRKWLPTMN 253 (1352)
Q Consensus 174 g~~Lr~yQleginwL~~~~~~~~~~ILADEmGLGKTiqaIa~l~~L~~~~~~~gp~LIVvP~s~L~qW~~Ef~kw~p~l~ 253 (1352)
..+|+|||++++.|++.. .+.++||||+||+|||+++++++..+...+ ..+++|||||.+++.||..||.+|+ ++.
T Consensus 151 ~~~LrpyQ~eav~~~l~~--~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g-~~~rvLIVvP~sLl~Qw~~E~~~~f-~l~ 226 (968)
T 3dmq_A 151 RTSLIPHQLNIAHDVGRR--HAPRVLLADEVGLGKTIEAGMILHQQLLSG-AAERVLIIVPETLQHQWLVEMLRRF-NLR 226 (968)
T ss_dssp SSCCCHHHHHHHHHHHHS--SSCEEEECCCTTSCHHHHHHHHHHHHHHTS-SCCCEEEECCTTTHHHHHHHHHHHS-CCC
T ss_pred CCCCCHHHHHHHHHHHHH--CCCCEEEECCCCCCHHHHHHHHHHHHHHHC-CCCEEEEEECHHHHHHHHHHHHHHH-CCC
T ss_conf 999709999999999970--589889878999759999999999999818-9982999957888999999999986-998
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECHHHHHHHH---HHHHCCCCCEEECCHHCCCCCCCHH---HHHH
Q ss_conf 999976841489999875402445799865459995289999619---6560057413730100004894239---9999
Q 000684 254 VIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDK---AVLSKIKWNYLMVDEAHRLKNSEAQ---LYTT 327 (1352)
Q Consensus 254 vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~ViItTye~l~~d~---~~L~~i~w~~IIIDEAHrlKN~~S~---l~~~ 327 (1352)
+.+++|+........ .......++|+|+||+.+..+. ..+....|++|||||||+++|..+. .+++
T Consensus 227 v~v~~~~~~~~~~~~--------~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~ 298 (968)
T 3dmq_A 227 FALFDDERYAEAQHD--------AYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQA 298 (968)
T ss_dssp CEECCHHHHHHHHHT--------TCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHH
T ss_pred EEEECCCHHHHHHHH--------CCCCCCCCCEEEECHHHHHHCHHHHHHHHHCCCCEEEEHHHHHHCCCCCCCHHHHHH
T ss_conf 799806205554320--------036445689899768998648788887641587789744467625888754299999
Q ss_pred HHCC--CCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCC-------------C------------
Q ss_conf 9714--446758873367889989999998310778989935899973034654-------------5------------
Q 000684 328 LSEF--STKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSF-------------N------------ 380 (1352)
Q Consensus 328 L~~l--~~~~RllLTGTPlqNnl~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~-------------~------------ 380 (1352)
+..+ .+.++|+|||||++|++.|+|++++|+.|..|.+...|...+...... .
T Consensus 299 l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~ 378 (968)
T 3dmq_A 299 IEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIG 378 (968)
T ss_dssp HHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTC
T ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
T ss_conf 99986257858999768766987999999982593011898999999985788999999874267899889999998842
Q ss_pred -------------------HHHHHHHHHHH-----CCHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf -------------------78999999842-----002123355755203998389999813798899999999998478
Q 000684 381 -------------------ENELANLHMEL-----RPHILRRIIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFH 436 (1352)
Q Consensus 381 -------------------~~~~~~L~~~L-----~p~ilRR~k~dv~~~LP~k~e~iv~v~lS~~Qk~~Y~~il~~~~~ 436 (1352)
......+..++ ...++|+.+..+ ..+|.+....+.+++++.....|.........
T Consensus 379 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i-~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~ 457 (968)
T 3dmq_A 379 EQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGV-KGFPKRELHTIKLPLPTQYQTAIKVSGIMGAR 457 (968)
T ss_dssp TTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTC-CCCCCCCCCEEEECCCHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-CCCCHHHEEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 03367887503622233379999999999986173326563226554-55671115752368999999999987543021
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 63103468631499999999773088533222358999998778512579996601136799999998620697289996
Q 000684 437 DLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFS 516 (1352)
Q Consensus 437 ~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFS 516 (1352)
.+ .... .. .+.+|..+... .... ....+..+.|+..|.+++.. ..+.++||||
T Consensus 458 ~~------~~~~-------~~-~~l~pe~~~~~---l~~~--------~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~ 510 (968)
T 3dmq_A 458 KS------AEDR-------AR-DMLYPERIYQE---FEGD--------NATWWNFDPRVEWLMGYLTS--HRSQKVLVIC 510 (968)
T ss_dssp SS------GGGG-------TH-HHHCSGGGTTT---TTSS--------SCCTTTTSHHHHHHHHHHHH--TSSSCCCEEC
T ss_pred HH------HHHH-------HH-HHCCHHHHHHH---HHHH--------HHCCCCCCHHHHHHHHHHHH--CCCCCEEEEE
T ss_conf 26------6777-------76-41085989987---6433--------31356856799999999983--7999789996
Q ss_pred CCHHHHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCHHH
Q ss_conf 421489999999885-5990999948998999999999851999998289950488766778786678998199999433
Q 000684 517 QMVRMLDILAEYMSY-KGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQN 595 (1352)
Q Consensus 517 q~~~~ldiL~d~L~~-~g~~~~rLdG~~~~~~R~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~ 595 (1352)
++..+++.|...|.. .|+.+..++|+++..+|..+++.|+++.+ .+.+|++|++++.|||++.|++||+||++|||..
T Consensus 511 ~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~-~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~ 589 (968)
T 3dmq_A 511 AKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDT-GAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDL 589 (968)
T ss_dssp SSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTS-SCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCC-CCCEEEECCHHHCCCCCCCCCEEEEECCCCCHHH
T ss_conf 959999999999998749838998499999999999999747997-6308985334316888556767999569998789
Q ss_pred HHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 997832100149986189999925998999999999998735799
Q 000684 596 DLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHL 640 (1352)
Q Consensus 596 dlQAigRahRiGQ~k~V~VyrLvt~~TiEE~Il~ra~~K~~L~~~ 640 (1352)
+.|++||++|+||++.|.||++++.+|+|++|++.+..|+.+...
T Consensus 590 ~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~ 634 (968)
T 3dmq_A 590 LEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEH 634 (968)
T ss_dssp HHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSS
T ss_pred HHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEC
T ss_conf 998701143079985089998057771999999999867876353
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=387.03 Aligned_cols=431 Identities=15% Similarity=0.173 Sum_probs=298.2
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECH-HHHHHHHHHHHHHC--C
Q ss_conf 99886999999999998713999579991999819999999999999815999839999771-42999999999886--9
Q 000684 174 GGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPL-STLSNWAKEFRKWL--P 250 (1352)
Q Consensus 174 g~~Lr~yQleginwL~~~~~~~~~~ILADEmGLGKTiqaIa~l~~L~~~~~~~gp~LIVvP~-s~L~qW~~Ef~kw~--p 250 (1352)
+.+|+|||.+++.|++. + ++|++++||+|||++++.++..+.. ...+++|||||. +++.||.++|.+|+ |
T Consensus 7 ~~~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~ 79 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLP 79 (494)
T ss_dssp HHCCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSC
T ss_pred CCCCCHHHHHHHHHHHH----C-CEEEECCCCCCHHHHHHHHHHHHHH--CCCCEEEEEECCHHHHHHHHHHHHHHHCCC
T ss_conf 87863999999999961----9-9899918998789999999999986--479859999788899999999999874756
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECHHHHHHHHH--HHHCCCCCEEECCHHCCCCCCCHHH--HH
Q ss_conf 9809999768414899998754024457998654599952899996196--5600574137301000048942399--99
Q 000684 251 TMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKA--VLSKIKWNYLMVDEAHRLKNSEAQL--YT 326 (1352)
Q Consensus 251 ~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~ViItTye~l~~d~~--~L~~i~w~~IIIDEAHrlKN~~S~l--~~ 326 (1352)
...+.+++|........... ...+|+|+||+.+..... .+....|++||+||||++++..+.. ..
T Consensus 80 ~~~v~~~~g~~~~~~~~~~~-----------~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~ 148 (494)
T 1wp9_A 80 PEKIVALTGEKSPEERSKAW-----------ARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAR 148 (494)
T ss_dssp GGGEEEECSCSCHHHHHHHH-----------HHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHH
T ss_pred HHHEEEEECCCCHHHHHHHC-----------CCCCEEEECHHHHHHHHHCCCCCHHHCEEEEEECCCCCCCCCCHHHHHH
T ss_conf 11168760775335566533-----------5798999639999999860871565410899978756688881999999
Q ss_pred HHH-CCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCC---CCHHHHHHHHCCC------CCCCHHHHHHHHHHHCCHHH
Q ss_conf 997-1444675887336788998999999831077898---9935899973034------65457899999984200212
Q 000684 327 TLS-EFSTKNKLLITGTPLQNSVEELWALLHFLDHDKF---KSKDDFIQNYKNL------SSFNENELANLHMELRPHIL 396 (1352)
Q Consensus 327 ~L~-~l~~~~RllLTGTPlqNnl~EL~sLl~fL~p~~f---~~~~~F~~~f~~~------~~~~~~~~~~L~~~L~p~il 396 (1352)
.+. .....++++|||||. |+..+++.++.++..... .....+...|... ..........+...+.+++.
T Consensus 149 ~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (494)
T 1wp9_A 149 EYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLR 227 (494)
T ss_dssp HHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCEEEEEECCCC-CCCHHHHHHHHHCCHHEEECCCCCCHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 9973288776999956998-885789999985070005026787587887527874268956885889999998989999
Q ss_pred HHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHH---------------------HHHCCCCCCHHHHHHHHHH
Q ss_conf 3355755203998389999813798899999999998478---------------------6310346863149999999
Q 000684 397 RRIIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFH---------------------DLNKGVRGNQVSLLNIVVE 455 (1352)
Q Consensus 397 RR~k~dv~~~LP~k~e~iv~v~lS~~Qk~~Y~~il~~~~~---------------------~l~~~~~~~~~~llnil~~ 455 (1352)
++.+......+..... ..++..........+..... .+..........+...+..
T Consensus 228 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (494)
T 1wp9_A 228 DALKPLAETGLLESSS----PDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKK 303 (494)
T ss_dssp HHHHHHHHHTSSSCCC----TTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCC----CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_conf 9999999735565457----773355789999999987533563113479999888889999999985257999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHH-------HHHCCHHHHHHHHHHHHH--HCCCEEEEEECCHHHHHHHH
Q ss_conf 977308853322235899999877851257999-------660113679999999862--06972899964214899999
Q 000684 456 LKKCCNHPFLFESADHGYGGDTSINDTSKLERI-------ILSSGKLVILDKLLVRLH--ETKHRVLIFSQMVRMLDILA 526 (1352)
Q Consensus 456 Lrk~cnHP~L~~~~e~~~~~~~~~~~~~~l~~l-------i~~SgKl~~L~kLL~~l~--~~g~KVLIFSq~~~~ldiL~ 526 (1352)
+...+.|+........ . ........... ...++|+..|.++|.... ..+.++||||++..+++.|.
T Consensus 304 l~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~ 378 (494)
T 1wp9_A 304 LYEEAKAGSTKASKEI--F---SDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIV 378 (494)
T ss_dssp HHHHHHTTCCHHHHHH--H---TSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHH--H---HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHH
T ss_conf 9875223211455666--6---5078898999999887458998699999999999843689975999976689999999
Q ss_pred HHHHHCCCCEEEEEC--------CCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHH
Q ss_conf 998855990999948--------998999999999851999998289950488766778786678998199999433997
Q 000684 527 EYMSYKGFQFQRLDG--------STKAELRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQ 598 (1352)
Q Consensus 527 d~L~~~g~~~~rLdG--------~~~~~~R~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQ 598 (1352)
++|...|+.+.+++| +++..+|+.+++.|+++. ..+|++|+++++||||+.|++||+||++|||..+.|
T Consensus 379 ~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~---~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Q 455 (494)
T 1wp9_A 379 NELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGE---FNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQ 455 (494)
T ss_dssp HHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTS---CSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHH
T ss_pred HHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC---CEEEEECCCCCCCCCCHHCCEEEEECCCCCHHHHHH
T ss_conf 99997599807996566544444589999999999986699---469998884125887143798999289887899999
Q ss_pred HHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 8321001499861899999259989999999999987357
Q 000684 599 AMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLD 638 (1352)
Q Consensus 599 AigRahRiGQ~k~V~VyrLvt~~TiEE~Il~ra~~K~~L~ 638 (1352)
++||++|.|| +.+|+|++.+|+||+++.++..|..+.
T Consensus 456 r~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~ 492 (494)
T 1wp9_A 456 RRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIM 492 (494)
T ss_dssp HHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC------
T ss_pred HHHHCCCCCC---CEEEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf 8752257788---469999956987899999888789873
No 6
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=366.33 Aligned_cols=580 Identities=13% Similarity=0.102 Sum_probs=313.2
Q ss_pred CCEEEEEECCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHH-HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 526999734975321232461222022004799989766657-6642003884677421012231067742147445434
Q 000684 13 EMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYAKKVVE-DVRFRKMVSREEIELNDVSKEMDLDIIKQNSQVERII 91 (1352)
Q Consensus 13 ~~eyLVKWkg~S~~H~tWes~~~L~~~~~~kk~~n~~kk~~~-~~~~~~~~~~e~~e~~~~~~e~~~~~~~~~~~veRIi 91 (1352)
-.+|+.+| +++++|++|+...-|..+.+.. ++++-..- +.--...++.|+.|..-. .+..-..-.....+++++
T Consensus 87 ~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~ 161 (797)
T 4a2q_A 87 LAEAIENW-DFSKLEKLELHRQLLKRIEATM---LEVDPVALIPYISTCLIDRECEEIQQI-SENRSKAAGITKLIECLC 161 (797)
T ss_dssp HHHHHHTT-CCHHHHHHHHHHHHHHHHGGGG---TTSCHHHHHHHHTTTSCHHHHHHHHHH-HHHTCHHHHHHHHHHHHH
T ss_pred HHHHHCCC-CCHHHHHHHHHHHHHHHHCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHH
T ss_conf 99985545-8501566899999999847531---458499999988865323778999999-972581668999999998
Q ss_pred EEECCCCCCCCC------------CEEEEEECCCCCCCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHCCHHHHHHHHC
Q ss_conf 420157899984------------32578832899963344344211336-99999999999998862062025653100
Q 000684 92 ADRISKDSSGNV------------TQEYLVKWKGLSYAEATWEKDEIIDF-AQDAIDEYKAREAAMAEQGKMVDLQRKKG 158 (1352)
Q Consensus 92 ~~~~~~~~~~~~------------~~~YLVKW~~L~y~~~TWE~~~~i~~-~~~~i~~y~~r~~~~~~~~~~~~~~r~~~ 158 (1352)
..- . .++ ...+.-.|.+..+.+..++....... ....+......... ...... . ..
T Consensus 162 ~~~----~-~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~-~--~~ 230 (797)
T 4a2q_A 162 RSD----K-EHWPKSLQLALDTTGYYRASELWDIREDNAKDVDSEMTDASEDCLEASMTYSEEAE---PDDNLS-E--NL 230 (797)
T ss_dssp TCC----C-TTHHHHHHHHHHHTTCHHHHHHHC-----------------------------------------------
T ss_pred HCC----C-CCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCC-C--CC
T ss_conf 514----3-28789999999972416799986278766322221234455443200000146887---633222-3--68
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCC--CCCEEEEECH-
Q ss_conf 1223333468974589988699999999999871399957999199981999999999999981599--9839999771-
Q 000684 159 KASLRKLDEQPEWLRGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQI--PGPFLVVVPL- 235 (1352)
Q Consensus 159 ~~~~~~~~~~P~~~~g~~Lr~yQleginwL~~~~~~~~~~ILADEmGLGKTiqaIa~l~~L~~~~~~--~gp~LIVvP~- 235 (1352)
......+...+......+|+|||.+++.+++ .+.++|++++||+|||++++..+......... .+++|||||.
T Consensus 231 ~~~~~~~~~~~~~~g~~~l~~~Q~~~i~~~l----~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~ 306 (797)
T 4a2q_A 231 GSAAEGIGKPPPVYETKKARSYQIELAQPAI----NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKV 306 (797)
T ss_dssp -----------------CCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSH
T ss_pred CCCHHHHCCCHHHCCCCCCCHHHHHHHHHHH----HCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCH
T ss_conf 9846652485442388999999999999998----099989996999729999999999999846656799699996989
Q ss_pred HHHHHHHHHHHHHCC--CCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECHHHHHHHHHH--H-HCCCCCEEE
Q ss_conf 429999999998869--98099997684148999987540244579986545999528999961965--6-005741373
Q 000684 236 STLSNWAKEFRKWLP--TMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAV--L-SKIKWNYLM 310 (1352)
Q Consensus 236 s~L~qW~~Ef~kw~p--~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~ViItTye~l~~d~~~--L-~~i~w~~II 310 (1352)
+++.||..+|.+|++ ++.+.+++|+.......... ....+|+|+||+.+...... + ....|++||
T Consensus 307 ~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----------~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iV 376 (797)
T 4a2q_A 307 PVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKV----------IEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMI 376 (797)
T ss_dssp HHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHH----------HHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEE
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHH----------HCCCCEEEECHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 9999999999986143794699996996232469974----------079999997669999999826546513377899
Q ss_pred CCHHCCCCCCCHHHHHHHHCC---------CCCCEEEEECCCCCCC----------HHHHHHHHHHCCCCCCC-CHHHHH
Q ss_conf 010000489423999999714---------4467588733678899----------89999998310778989-935899
Q 000684 311 VDEAHRLKNSEAQLYTTLSEF---------STKNKLLITGTPLQNS----------VEELWALLHFLDHDKFK-SKDDFI 370 (1352)
Q Consensus 311 IDEAHrlKN~~S~l~~~L~~l---------~~~~RllLTGTPlqNn----------l~EL~sLl~fL~p~~f~-~~~~F~ 370 (1352)
|||||++.+... ....+..+ ....+++|||||.+++ +.++++.++.-...... ....+.
T Consensus 377 iDEaH~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~ 455 (797)
T 4a2q_A 377 FDECHNTTGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQ 455 (797)
T ss_dssp ETTGGGCSTTSH-HHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHH
T ss_pred EECCCCCCCCCC-HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCHHHHH
T ss_conf 988635588764-9999999999763147887859997277554552248999999999998549848854543178899
Q ss_pred HHHCCCCCC--------C---HHHH----HHHHHHHCCHHH----------------------HHHHHHHHCCCCCCEEE
Q ss_conf 973034654--------5---7899----999984200212----------------------33557552039983899
Q 000684 371 QNYKNLSSF--------N---ENEL----ANLHMELRPHIL----------------------RRIIKDVEKSLPPKIER 413 (1352)
Q Consensus 371 ~~f~~~~~~--------~---~~~~----~~L~~~L~p~il----------------------RR~k~dv~~~LP~k~e~ 413 (1352)
..+...... . ...+ ..++..+..++. ...+......++.
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---- 531 (797)
T 4a2q_A 456 RFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLED---- 531 (797)
T ss_dssp HHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSS----
T ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCC----
T ss_conf 7358885488845777786789999999999999999987567765300001140567789999999877740343----
Q ss_pred EEEECCCHHHHHHHHHHHH------HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC--CCCCCCCCCCCCCCCCHHHH
Q ss_conf 9981379889999999999------847863103468631499999999773088533--22235899999877851257
Q 000684 414 ILRVEMSPLQKQYYKWILE------RNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFL--FESADHGYGGDTSINDTSKL 485 (1352)
Q Consensus 414 iv~v~lS~~Qk~~Y~~il~------~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L--~~~~e~~~~~~~~~~~~~~l 485 (1352)
...+...|..+.. +....+...... ........++..|.+.-- +...+...... .......+
T Consensus 532 ------~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~l 601 (797)
T 4a2q_A 532 ------KEEESRICRALFICTEHLRKYNDALIISEDA---RIIDALSYLTEFFTNVKNGPYTELEQHLTAK-FQEKEPEL 601 (797)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH-HHTTHHHH
T ss_pred ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH-HHHHHHHH
T ss_conf ------2025679999999999999999887654132---5888999999999987504766899999999-99999999
Q ss_pred HHHH----HHCCHHHHHHHHHHHHH--HCCCEEEEEECCHHHHHHHHHHHHH------------CCCCEEEEECCCCHHH
Q ss_conf 9996----60113679999999862--0697289996421489999999885------------5990999948998999
Q 000684 486 ERII----LSSGKLVILDKLLVRLH--ETKHRVLIFSQMVRMLDILAEYMSY------------KGFQFQRLDGSTKAEL 547 (1352)
Q Consensus 486 ~~li----~~SgKl~~L~kLL~~l~--~~g~KVLIFSq~~~~ldiL~d~L~~------------~g~~~~rLdG~~~~~~ 547 (1352)
.... ..++|+..|.++|.... ..++++||||+++.+++.|.++|.. .|..+..++|+++..+
T Consensus 602 ~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~e 681 (797)
T 4a2q_A 602 IALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPS 681 (797)
T ss_dssp HHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCHHH
T ss_conf 87630788899599999999999850589970899979589999999999747564665521898447754578989999
Q ss_pred HHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHH
Q ss_conf 99999985199999828995048876677878667899819999943399783210014998618999992599899999
Q 000684 548 RHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDI 627 (1352)
Q Consensus 548 R~~~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQ~k~V~VyrLvt~~TiEE~I 627 (1352)
|..+++.|++++ ...+|++|+++++|||++.|++||+||++|||..++|++|| |+.+.+.+|+|++.++++++
T Consensus 682 R~~~l~~F~~~g--~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR----GR~~~g~~i~l~~~~~~ee~- 754 (797)
T 4a2q_A 682 QKGVLDAFKTSK--DNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN- 754 (797)
T ss_dssp --------------CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHHHHHH-
T ss_pred HHHHHHHHHCCC--CCEEEEECCCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCC----CCCCCCEEEEEEECCCHHHH-
T ss_conf 999999851369--70499974805447975108989994899988999985388----87878659999728768899-
Q ss_pred HHHHHHHHHHHHHHHCC
Q ss_conf 99999987357998700
Q 000684 628 LERAKKKMVLDHLVIQK 644 (1352)
Q Consensus 628 l~ra~~K~~L~~~Vi~~ 644 (1352)
+.....|..+...++..
T Consensus 755 ~~~~~~ke~~~~~~i~~ 771 (797)
T 4a2q_A 755 EKCNRYKEEMMNKAVEK 771 (797)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99888999999999998
No 7
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=1.00 E-value=1 Score=356.35 Aligned_cols=377 Identities=16% Similarity=0.177 Sum_probs=280.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECH-HHHHHHHHHHHHHCC
Q ss_conf 5899886999999999998713999579991999819999999999999815999839999771-429999999998869
Q 000684 172 LRGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIPGPFLVVVPL-STLSNWAKEFRKWLP 250 (1352)
Q Consensus 172 ~~g~~Lr~yQleginwL~~~~~~~~~~ILADEmGLGKTiqaIa~l~~L~~~~~~~gp~LIVvP~-s~L~qW~~Ef~kw~p 250 (1352)
..+.+|+|||.+++++++ .+.++||+++||+|||++++.++..+ .+++|||||. +++.||.++|.+|
T Consensus 89 ~~~~~l~~~Q~~ai~~i~----~~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~-- 156 (472)
T 2fwr_A 89 DAEISLRDYQEKALERWL----VDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF-- 156 (472)
T ss_dssp CCCCCBCHHHHHHHHHHT----TTTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG--
T ss_pred CCCCCCCHHHHHHHHHHH----HCCCEEEEECCCCCHHHHHHHHHHHC------CCCEEEEECCHHHHHHHHHHHHHC--
T ss_conf 589986889999999999----65987999699998899999999980------999999987999999999999967--
Q ss_pred CCE-EEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECHHHHHHHHHHHHCCCCCEEECCHHCCCCCCCHHHHHHHH
Q ss_conf 980-9999768414899998754024457998654599952899996196560057413730100004894239999997
Q 000684 251 TMN-VIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLS 329 (1352)
Q Consensus 251 ~l~-vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~ViItTye~l~~d~~~L~~i~w~~IIIDEAHrlKN~~S~l~~~L~ 329 (1352)
++. +.+++|.... ..+|+|+||+.+......+. -.|++|||||||++.+.... ..+.
T Consensus 157 ~~~~v~~~~g~~~~-------------------~~~Ivv~T~~~l~~~~~~~~-~~~~liIvDEaH~~~~~~~~--~~~~ 214 (472)
T 2fwr_A 157 GEEYVGEFSGRIKE-------------------LKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAESYV--QIAQ 214 (472)
T ss_dssp CGGGEEEBSSSCBC-------------------CCSEEEEEHHHHHHTHHHHT-TTCSEEEEETGGGTTSTTTH--HHHH
T ss_pred CCCCEEEECCCCCC-------------------CCCEEEEECHHHHHHHHHHC-CCCCEEEEECCCCCCCHHHH--HHHH
T ss_conf 99636998787677-------------------67789997689997799736-87778999897578976899--9997
Q ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHC-CCC
Q ss_conf 1444675887336788998999999831077898993589997303465457899999984200212335575520-399
Q 000684 330 EFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRIIKDVEK-SLP 408 (1352)
Q Consensus 330 ~l~~~~RllLTGTPlqNnl~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~L~~~L~p~ilRR~k~dv~~-~LP 408 (1352)
.+...++++|||||.+++..+ ..+...+.+.+.++...++.. .++
T Consensus 215 ~~~~~~~l~lSATp~~~~~~~----------------------------------~~l~~~~~~~~~~~~~~~l~~~~l~ 260 (472)
T 2fwr_A 215 MSIAPFRLGLTATFEREDGRH----------------------------------EILKEVVGGKVFELFPDSLAGKHLA 260 (472)
T ss_dssp TCCCSEEEEEESCCCCTTSGG----------------------------------GSHHHHTCCEEEECCHHHHTSCCCC
T ss_pred HCCCCEEEEEECCCCCCCCHH----------------------------------HHHHHHHCCEEEECCHHHHHCCCCC
T ss_conf 357781899932766889778----------------------------------9999972985765478987067678
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 838999981379889999999999847863103468--631499999999773088533222358999998778512579
Q 000684 409 PKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRG--NQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDTSKLE 486 (1352)
Q Consensus 409 ~k~e~iv~v~lS~~Qk~~Y~~il~~~~~~l~~~~~~--~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~~~l~ 486 (1352)
+.....+.+++++.+...|..+.......+...... ....+ ..++.....................
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (472)
T 2fwr_A 261 KYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDF------------NKIVMASGYDERAYEALRAWEEARR 328 (472)
T ss_dssp SEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSS------------TTTTTTTCCSSSSSTTTHHHHHHHH
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH------------HHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 8189999858998999999999999999998647542244668------------9999872369889999999999999
Q ss_pred HHHHHCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 99660113679999999862069728999642148999999988559909999489989999999998519999982899
Q 000684 487 RIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYKGFQFQRLDGSTKAELRHQAMDHFNAPGSEDFCFL 566 (1352)
Q Consensus 487 ~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~g~~~~rLdG~~~~~~R~~~Id~Fn~~~s~~~vfL 566 (1352)
.....+.|+..|.+++.. ..++++||||++..+++.|...|. +..++|+++..+|+.+++.|+++. ..+|
T Consensus 329 ~~~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~---~~vL 398 (472)
T 2fwr_A 329 IAFNSKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGR---FRAI 398 (472)
T ss_dssp HHHSCSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSS---CSBC
T ss_pred HHHCCHHHHHHHHHHHHH--CCCCCEEEEECCHHHHHHHHHHHC-----CCEEECCCCHHHHHHHHHHHHCCC---CCEE
T ss_conf 763373899999999985--789838999797999999999748-----655628999999999999986799---8889
Q ss_pred EECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCC-CEEEEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 5048876677878667899819999943399783210014998-61899999259989999999999987357
Q 000684 567 LSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQ-EVVNIYRFVTSKSVEEDILERAKKKMVLD 638 (1352)
Q Consensus 567 LSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQ~-k~V~VyrLvt~~TiEE~Il~ra~~K~~L~ 638 (1352)
++|++++.|+|++.+++||+||++||+..+.|++||++|.||. +.|.||.|++++|+||++.++...|..+.
T Consensus 399 v~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~~~a 471 (472)
T 2fwr_A 399 VSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNAAKGA 471 (472)
T ss_dssp BCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC---------------
T ss_pred EECCCHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 9857051484620286899989999888999987631577799853999999819985379999998765058
No 8
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=1.00 E-value=1 Score=354.95 Aligned_cols=257 Identities=25% Similarity=0.360 Sum_probs=222.9
Q ss_pred CHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 0212335575520399838999981379889999999999847863103468-631499999999773088533222358
Q 000684 393 PHILRRIIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRG-NQVSLLNIVVELKKCCNHPFLFESADH 471 (1352)
Q Consensus 393 p~ilRR~k~dv~~~LP~k~e~iv~v~lS~~Qk~~Y~~il~~~~~~l~~~~~~-~~~~llnil~~Lrk~cnHP~L~~~~e~ 471 (1352)
.--+||+|++|..+|||+.+.+++|+||+.|+++|+.++.+....+...... ....+++.++.||++|+||+++...+
T Consensus 11 ~~~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hP~l~~~~~- 89 (271)
T 1z5z_A 11 SSGLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGE- 89 (271)
T ss_dssp -----------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCSC-
T ss_pred CCCCCCCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCC-
T ss_conf 5564164877875199977999981899999999999999999999740352128899999999999848998846873-
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHHH
Q ss_conf 9999987785125799966011367999999986206972899964214899999998855-990999948998999999
Q 000684 472 GYGGDTSINDTSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSYK-GFQFQRLDGSTKAELRHQ 550 (1352)
Q Consensus 472 ~~~~~~~~~~~~~l~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~ldiL~d~L~~~-g~~~~rLdG~~~~~~R~~ 550 (1352)
.++..|+|+..|.++|..+...++|+||||+++.++++|+.+|... |+.+.+++|+++..+|+.
T Consensus 90 ---------------~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~ 154 (271)
T 1z5z_A 90 ---------------QSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDD 154 (271)
T ss_dssp ---------------CCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHH
T ss_pred ---------------CCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH
T ss_conf ---------------22346899999999999998679969999551999999999998733984799979999999999
Q ss_pred HHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHH
Q ss_conf 99985199999828995048876677878667899819999943399783210014998618999992599899999999
Q 000684 551 AMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILER 630 (1352)
Q Consensus 551 ~Id~Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQ~k~V~VyrLvt~~TiEE~Il~r 630 (1352)
++++|+++.. ..+||+||++||+||||+.|++||+||++|||..+.||+||+||+||+++|.||+|++.+|+||+|+++
T Consensus 155 ~i~~F~~~~~-~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~ 233 (271)
T 1z5z_A 155 IISKFQNNPS-VKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQL 233 (271)
T ss_dssp HHHHHHHCTT-CCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHH
T ss_pred HHHHHCCCCC-CCEEEEEHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCCHHHHHHHH
T ss_conf 9998328999-978997223515886764489999979999851899999852323899856999985498899999999
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHCCHH
Q ss_conf 99987357998700111241366310052469999840367
Q 000684 631 AKKKMVLDHLVIQKLNAEGSWRRKKQRKGNELSAILRFGAE 671 (1352)
Q Consensus 631 a~~K~~L~~~Vi~~~~~~g~~~~~~~~~~~el~~ll~~ga~ 671 (1352)
+..|..+...+++.... .....+.+||.+|+.++.+
T Consensus 234 ~~~K~~l~~~~~~~~~~-----~~~~~~~~~l~~l~~~~~~ 269 (271)
T 1z5z_A 234 LAFKRSLFKDIISSGDS-----WITELSTEELRKVIELSVG 269 (271)
T ss_dssp HHHCHHHHTTGGGGTTH-----HHHTSCHHHHHHHHSCCCT
T ss_pred HHHHHHHHHHHHCCCCH-----HHHCCCHHHHHHHHCCCCC
T ss_conf 99999999999716705-----4323899999999655889
No 9
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=1.00 E-value=1 Score=340.35 Aligned_cols=189 Identities=29% Similarity=0.529 Sum_probs=165.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCCH-HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC----------------
Q ss_conf 8899889999999998508910-38899988088878896999999999999989998733999----------------
Q 000684 816 GNLSKRDATRFYRAVMKFGNQS-QISLIARDAGGAVATAPQEVVVELFDILIDGCREAVEVGSP---------------- 878 (1352)
Q Consensus 816 ~~~~~~~~~~~~~~~~k~G~~~-~~~~i~~e~~gk~~~~~~e~~~~~~~~~~~~c~e~v~~~~~---------------- 878 (1352)
++||++|+|+||||+.|||++. +++.|++|++ |++++.+.++++++++++.|.++|++++.
T Consensus 4 ~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~--L~~ks~~~i~~~~~~li~~c~~av~e~~~~~~~~~~~~E~~a~e~ 81 (270)
T 2xb0_X 4 GSIGESEVRALYKAILKFGNLKEILDELIADGT--LPVKSFEKYGETYDEMMEAAKDCVHEEEKNRKEILEKLEKHATAY 81 (270)
T ss_dssp CCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTS--SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999889999999999986899899999998432--566999999999999999999999988764677888877655565
Q ss_pred ---------------------------CCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHC-CCCCCCCEEECCC--
Q ss_conf ---------------------------9999993124572-11366788469999999999601-8897774386022--
Q 000684 879 ---------------------------DPKGPPLLDFFGV-SVKANDLINRVEELQLLAKRISR-YEDPIKQFRVLSY-- 927 (1352)
Q Consensus 879 ---------------------------~~k~~~l~~~~gv-~~~~~~il~R~~~l~~L~~~i~~-~~~p~~~~~i~~~-- 927 (1352)
..+++++|+|+|| +|||+++++|+.+|++|++.|+. |.+++.+|+|+..
T Consensus 82 ~~~~~~g~~~~~~~~~~~~~~~~~akkk~kkavlf~~~gVk~vNAe~ll~r~~eL~~L~~~i~~~~~~d~~~f~lp~~~~ 161 (270)
T 2xb0_X 82 RAKLKSGEIKAENQPKDNPLTRLSLKKREKKAVLFNFKGVKSLNAESLLSRVEDLKYLKNLINSNYKDDPLKFSLGNNTP 161 (270)
T ss_dssp HHHHHHTSSCTTSCCSSCHHHHHHHHHTCCCCCEECCSSCCCEEHHHHHHHHHHHHHHHHHHHHHCSSCGGGCCCTTCCC
T ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCC
T ss_conf 54320355554444456751144433033551378716853122999986378999999997521556421346467567
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCC-------------------------C
Q ss_conf 579999899898999999999887520586048867555106533348753233-------------------------3
Q 000684 928 LKPSNWSKGCGWNQFDDARLLLGIHYHGFGNWENIRLDERLGLTKKIAPVELQH-------------------------H 982 (1352)
Q Consensus 928 ~k~~~w~~~~~W~~eeD~~LL~gi~kyGyG~We~Ir~D~~Lgl~~K~~~~~~~~-------------------------~ 982 (1352)
.++++|+ |.|+++||++||+|||+||||+|++||+||.|+|++|||+++... .
T Consensus 162 ~~~~~W~--c~W~~~dD~~LLvGIykyGyG~We~Ir~Dp~L~L~dKi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (270)
T 2xb0_X 162 KPVQNWS--SNWTKEEDEKLLIGVFKYGYGSWTQIRDDPFLGITDKIFLNEVHNPVAKKSASSSDTTPTPSKKGKGITGS 239 (270)
T ss_dssp CCCTTSS--SCCCHHHHHHHHHHHHHHCTTCHHHHHHCTTTCCGGGCCC-------------------------------
T ss_pred CCCCCCC--CCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC
T ss_conf 7889999--99586899999988999768869998238635776633047876432224556554431122125322211
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 47788824488999999998785301
Q 000684 983 ETFLPRAPNLKERANALLEMELAAVG 1008 (1352)
Q Consensus 983 ~~~~p~a~hL~rR~d~LL~~e~~~~~ 1008 (1352)
..++|+|+||+||+||||+.+.+...
T Consensus 240 ~~k~P~a~hL~rR~dYLl~~L~~~~~ 265 (270)
T 2xb0_X 240 SKKVPGAIHLGRRVDYLLSFLRGGLN 265 (270)
T ss_dssp -CCSCCHHHHHHHHHHHHHHHTTTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 25599741799999999999998601
No 10
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=338.98 Aligned_cols=427 Identities=15% Similarity=0.150 Sum_probs=259.5
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC--CCCCEEEEECHH-HHHHHHHHHHHHCC
Q ss_conf 998869999999999987139995799919998199999999999998159--998399997714-29999999998869
Q 000684 174 GGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQ--IPGPFLVVVPLS-TLSNWAKEFRKWLP 250 (1352)
Q Consensus 174 g~~Lr~yQleginwL~~~~~~~~~~ILADEmGLGKTiqaIa~l~~L~~~~~--~~gp~LIVvP~s-~L~qW~~Ef~kw~p 250 (1352)
..+|+|||.+++.+++ .+.++|++++||+|||++++..+........ ..+++|||||+. ++.||..+|.++++
T Consensus 246 ~~~~r~~Q~~ai~~il----~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 246 TKKARSYQIELAQPAI----NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp --CCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH----CCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf 8987799999999998----099899996998459999999999999736556898599996989999999999999712
Q ss_pred --CCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECHHHHHHHHHH--H-HCCCCCEEECCHHCCCCCCCHHHH
Q ss_conf --98099997684148999987540244579986545999528999961965--6-005741373010000489423999
Q 000684 251 --TMNVIVYVGTRASREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAV--L-SKIKWNYLMVDEAHRLKNSEAQLY 325 (1352)
Q Consensus 251 --~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~kf~ViItTye~l~~d~~~--L-~~i~w~~IIIDEAHrlKN~~S~l~ 325 (1352)
++.+.+++|+...+...... ....+|+|+||+.+...... + ....|++|||||||++.+..+ ..
T Consensus 322 ~~~~~v~~~~G~~~~~~~~~~~----------~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~-~~ 390 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVSVEKV----------IEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YN 390 (936)
T ss_dssp TTTCCEEEECCC-----CCHHH----------HHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCH-HH
T ss_pred CCCCEEEEEECCCCHHHHHHHH----------CCCCCEEEECHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCC-HH
T ss_conf 1695599997996312578974----------169999994499999998717645336787999987313599866-99
Q ss_pred HHHHCC---------CCCCEEEEECCCCCCCH----------HHHHHHHHHCCCCCC-CCHHHHHHHHCCCCC-------
Q ss_conf 999714---------44675887336788998----------999999831077898-993589997303465-------
Q 000684 326 TTLSEF---------STKNKLLITGTPLQNSV----------EELWALLHFLDHDKF-KSKDDFIQNYKNLSS------- 378 (1352)
Q Consensus 326 ~~L~~l---------~~~~RllLTGTPlqNnl----------~EL~sLl~fL~p~~f-~~~~~F~~~f~~~~~------- 378 (1352)
..+..+ ....+++|||||.+++. .+++++++.-..... .....+...+.....
T Consensus 391 ~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~ 470 (936)
T 4a2w_A 391 VLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKR 470 (936)
T ss_dssp HHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCC
T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHCCCCCCEEEECCC
T ss_conf 99999999863137886739986388554540208999999999998549715534654489998753677623773365
Q ss_pred -CC---HHHHHHHHHHHCCHHH--------------------------HHHHHHHHCCCCCCEEEEEEECCCHHHHHHHH
Q ss_conf -45---7899999984200212--------------------------33557552039983899998137988999999
Q 000684 379 -FN---ENELANLHMELRPHIL--------------------------RRIIKDVEKSLPPKIERILRVEMSPLQKQYYK 428 (1352)
Q Consensus 379 -~~---~~~~~~L~~~L~p~il--------------------------RR~k~dv~~~LP~k~e~iv~v~lS~~Qk~~Y~ 428 (1352)
.. ...+..+...+..++- ...+......+|.. .....+|.
T Consensus 471 ~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~----------~~~~~~~~ 540 (936)
T 4a2w_A 471 RIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDK----------EEESRICR 540 (936)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCH----------HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC----------CHHHHHHH
T ss_conf 56757999999999999999998876655532022332257799999999998877405532----------10357999
Q ss_pred HHHH------HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHH----------HHHHH---
Q ss_conf 9999------8478631034686314999999997730885332223589999987785125----------79996---
Q 000684 429 WILE------RNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSINDTSK----------LERII--- 489 (1352)
Q Consensus 429 ~il~------~~~~~l~~~~~~~~~~llnil~~Lrk~cnHP~L~~~~e~~~~~~~~~~~~~~----------l~~li--- 489 (1352)
.+.. +....+...... ........+...+.... ..+. ....... +....
T Consensus 541 ~l~~~~~~l~~~~~al~i~~~~---~~~~~~~~l~~~~~~~~-----~~~~----~~~e~~l~~~~~~~~~~l~~~~~~~ 608 (936)
T 4a2w_A 541 ALFICTEHLRKYNDALIISEDA---RIIDALSYLTEFFTNVK-----NGPY----TELEQHLTAKFQEKEPELIALSKDE 608 (936)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHH-----HTTC----CHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHHHH-----HCCC----CHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999988887500204---28889999999999876-----3258----8789999998999999999764056
Q ss_pred -HHCCHHHHHHHHHHHHH--HCCCEEEEEECCHHHHHHHHHHHHHC------------CCCEEEEECCCCHHHHHHHHHH
Q ss_conf -60113679999999862--06972899964214899999998855------------9909999489989999999998
Q 000684 490 -LSSGKLVILDKLLVRLH--ETKHRVLIFSQMVRMLDILAEYMSYK------------GFQFQRLDGSTKAELRHQAMDH 554 (1352)
Q Consensus 490 -~~SgKl~~L~kLL~~l~--~~g~KVLIFSq~~~~ldiL~d~L~~~------------g~~~~rLdG~~~~~~R~~~Id~ 554 (1352)
..++|+..|.++|.... ..++|+||||+++.+++.|.++|... |..+..++|+++..+|..++++
T Consensus 609 ~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~ 688 (936)
T 4a2w_A 609 TNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDA 688 (936)
T ss_dssp TCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-----------------------
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHH
T ss_conf 77897999999999998535899749999697999999999986373536666169965787656788899999999998
Q ss_pred HCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 51999998289950488766778786678998199999433997832100149986189999925998999999999998
Q 000684 555 FNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKK 634 (1352)
Q Consensus 555 Fn~~~s~~~vfLLSTrAgg~GINL~~AdtVIi~DsdWNP~~dlQAigRahRiGQ~k~V~VyrLvt~~TiEE~Il~ra~~K 634 (1352)
|+.+ +.+.+|++|+++++|||++.|++||+||++|||..++|++|| ||.+.+.+|.|++.+|++++.+ ....|
T Consensus 689 Fr~~--g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR----GR~~~g~vi~Li~~~t~ee~~~-~~~~k 761 (936)
T 4a2w_A 689 FKTS--KDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVENEK-CNRYK 761 (936)
T ss_dssp -------CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEESCHHHHHHHH-HHHHH
T ss_pred HHCC--CCEEEEEEECCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCC----CCCCCCEEEEEEECCCHHHHHH-HHHHH
T ss_conf 6315--981599980726427760558989993899988999996487----7888877999986988999999-98899
Q ss_pred HHHHHHHHCC
Q ss_conf 7357998700
Q 000684 635 MVLDHLVIQK 644 (1352)
Q Consensus 635 ~~L~~~Vi~~ 644 (1352)
..+...++..
T Consensus 762 e~~~~~~i~~ 771 (936)
T 4a2w_A 762 EEMMNKAVEK 771 (936)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999998
Done!