Query 000685
Match_columns 1352
No_of_seqs 824 out of 4082
Neff 7.0
Searched_HMMs 46136
Date Mon Apr 1 21:58:08 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000685.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000685hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0276 Vesicle coat complex C 100.0 8E-119 2E-123 1027.5 53.5 768 4-1145 6-781 (794)
2 KOG0292 Vesicle coat complex C 100.0 1E-103 3E-108 926.8 63.7 767 4-1183 2-809 (1202)
3 PF04053 Coatomer_WDAD: Coatom 100.0 1.5E-69 3.3E-74 647.4 32.3 397 483-1126 37-443 (443)
4 KOG0271 Notchless-like WD40 re 100.0 1.4E-39 3.1E-44 358.3 27.6 327 5-399 109-479 (480)
5 KOG0271 Notchless-like WD40 re 100.0 2.3E-34 5.1E-39 317.2 24.1 286 4-338 150-478 (480)
6 KOG0286 G-protein beta subunit 100.0 3.6E-33 7.8E-38 300.0 31.8 287 4-399 48-343 (343)
7 KOG0272 U4/U6 small nuclear ri 100.0 3.8E-33 8.2E-38 312.0 24.2 278 9-339 173-458 (459)
8 KOG0318 WD40 repeat stress pro 100.0 3.1E-29 6.7E-34 286.5 52.1 435 4-535 52-506 (603)
9 KOG0291 WD40-repeat-containing 100.0 6.1E-30 1.3E-34 301.6 42.3 434 3-514 137-617 (893)
10 KOG0292 Vesicle coat complex C 100.0 8.7E-29 1.9E-33 294.7 48.6 414 4-535 44-508 (1202)
11 KOG0319 WD40-repeat-containing 100.0 2.6E-30 5.6E-35 305.3 28.2 353 4-399 97-617 (775)
12 KOG0272 U4/U6 small nuclear ri 100.0 5.5E-31 1.2E-35 294.8 18.8 243 4-294 210-458 (459)
13 KOG0295 WD40 repeat-containing 100.0 1.1E-29 2.5E-34 279.9 24.8 289 4-400 101-405 (406)
14 KOG0645 WD40 repeat protein [G 100.0 2.6E-28 5.7E-33 260.5 31.7 298 3-400 6-310 (312)
15 KOG0291 WD40-repeat-containing 100.0 1.3E-27 2.7E-32 282.2 39.3 372 3-405 181-616 (893)
16 KOG0279 G protein beta subunit 100.0 5.1E-28 1.1E-32 259.3 31.8 302 2-401 6-313 (315)
17 KOG0276 Vesicle coat complex C 100.0 2.5E-27 5.4E-32 274.5 39.3 241 119-402 12-258 (794)
18 KOG0315 G-protein beta subunit 100.0 5.3E-28 1.1E-32 255.1 29.7 290 25-377 12-308 (311)
19 KOG0285 Pleiotropic regulator 100.0 1.5E-28 3.3E-33 269.5 26.5 294 4-402 144-440 (460)
20 KOG0263 Transcription initiati 100.0 1.8E-28 3.9E-33 293.4 24.1 320 4-388 371-703 (707)
21 KOG0273 Beta-transducin family 100.0 2.6E-27 5.6E-32 268.2 31.2 325 5-401 173-523 (524)
22 KOG0315 G-protein beta subunit 100.0 1.1E-27 2.3E-32 252.8 25.9 273 93-406 18-293 (311)
23 KOG0284 Polyadenylation factor 100.0 9.9E-29 2.2E-33 275.4 17.9 277 11-399 96-378 (464)
24 KOG0296 Angio-associated migra 100.0 5.1E-27 1.1E-31 259.3 30.6 335 3-400 56-397 (399)
25 KOG0318 WD40 repeat stress pro 100.0 4.2E-25 9E-30 252.9 47.2 433 5-540 97-552 (603)
26 KOG0281 Beta-TrCP (transducin 100.0 1.6E-28 3.4E-33 267.8 16.4 277 10-343 196-479 (499)
27 cd00200 WD40 WD40 domain, foun 100.0 3.3E-26 7.2E-31 254.9 35.8 284 4-399 2-289 (289)
28 KOG0279 G protein beta subunit 100.0 3.3E-27 7E-32 253.2 26.0 251 4-341 56-313 (315)
29 KOG0319 WD40-repeat-containing 100.0 1.1E-26 2.3E-31 274.9 26.3 289 4-340 316-618 (775)
30 KOG0266 WD40 repeat-containing 99.9 8.4E-26 1.8E-30 276.5 32.5 288 4-401 151-454 (456)
31 KOG0265 U5 snRNP-specific prot 99.9 1.4E-25 3E-30 242.7 27.2 285 4-338 40-333 (338)
32 KOG0273 Beta-transducin family 99.9 9.2E-26 2E-30 255.7 26.8 276 12-341 236-523 (524)
33 KOG0263 Transcription initiati 99.9 3.3E-26 7.1E-31 274.1 23.1 240 120-402 378-650 (707)
34 PLN00181 protein SPA1-RELATED; 99.9 7.6E-25 1.7E-29 286.2 36.6 305 6-400 478-792 (793)
35 KOG0281 Beta-TrCP (transducin 99.9 1.7E-26 3.8E-31 251.9 16.1 264 93-408 215-484 (499)
36 KOG0306 WD40-repeat-containing 99.9 2.3E-24 5.1E-29 254.7 34.7 356 4-402 142-623 (888)
37 KOG0316 Conserved WD40 repeat- 99.9 1.2E-24 2.7E-29 227.9 27.3 281 3-339 9-297 (307)
38 KOG0282 mRNA splicing factor [ 99.9 7.3E-26 1.6E-30 257.7 18.7 286 4-339 207-503 (503)
39 KOG0286 G-protein beta subunit 99.9 2.5E-24 5.3E-29 232.2 28.8 243 114-401 50-303 (343)
40 KOG0293 WD40 repeat-containing 99.9 3.6E-25 7.8E-30 246.8 22.9 291 4-401 217-513 (519)
41 KOG0275 Conserved WD40 repeat- 99.9 1.1E-25 2.4E-30 243.3 17.7 293 9-399 211-507 (508)
42 KOG0295 WD40 repeat-containing 99.9 2.1E-25 4.5E-30 246.4 19.8 249 4-295 143-405 (406)
43 KOG0284 Polyadenylation factor 99.9 8.1E-26 1.7E-30 252.3 14.5 243 7-341 134-380 (464)
44 KOG0313 Microtubule binding pr 99.9 1.6E-24 3.5E-29 240.4 24.4 284 9-341 103-416 (423)
45 KOG0285 Pleiotropic regulator 99.9 2.1E-24 4.6E-29 237.1 22.4 249 115-410 147-398 (460)
46 KOG0306 WD40-repeat-containing 99.9 1.3E-23 2.9E-28 248.4 28.3 283 5-342 367-665 (888)
47 KOG0296 Angio-associated migra 99.9 3.3E-23 7.2E-28 229.3 27.1 287 4-341 99-398 (399)
48 KOG0266 WD40 repeat-containing 99.9 4E-23 8.7E-28 252.9 29.7 251 115-407 154-415 (456)
49 PLN00181 protein SPA1-RELATED; 99.9 5.7E-22 1.2E-26 259.3 38.2 275 92-401 455-738 (793)
50 KOG2048 WD40 repeat protein [G 99.9 1.6E-20 3.5E-25 221.5 45.6 459 3-537 17-539 (691)
51 KOG0265 U5 snRNP-specific prot 99.9 8E-23 1.7E-27 221.5 23.7 262 116-415 43-310 (338)
52 KOG0293 WD40 repeat-containing 99.9 3.1E-23 6.6E-28 231.5 18.7 249 4-296 262-513 (519)
53 KOG0274 Cdc4 and related F-box 99.9 2.1E-22 4.5E-27 247.1 27.7 276 6-344 202-485 (537)
54 KOG2106 Uncharacterized conser 99.9 5.5E-21 1.2E-25 218.0 36.2 328 4-398 97-474 (626)
55 KOG0274 Cdc4 and related F-box 99.9 3.5E-22 7.7E-27 245.0 25.5 245 4-304 241-490 (537)
56 cd00200 WD40 WD40 domain, foun 99.9 3.7E-21 8.1E-26 214.2 31.5 242 4-339 44-289 (289)
57 KOG0282 mRNA splicing factor [ 99.9 1.1E-22 2.3E-27 232.0 18.8 247 115-399 210-503 (503)
58 KOG0313 Microtubule binding pr 99.9 8.3E-22 1.8E-26 219.0 25.2 260 93-401 123-418 (423)
59 KOG0278 Serine/threonine kinas 99.9 2.7E-22 5.8E-27 211.9 19.7 283 5-343 8-299 (334)
60 KOG0772 Uncharacterized conser 99.9 5.3E-22 1.2E-26 226.7 23.3 302 5-402 161-489 (641)
61 KOG0645 WD40 repeat protein [G 99.9 2.4E-21 5.2E-26 207.5 26.8 238 115-400 10-260 (312)
62 KOG0643 Translation initiation 99.9 1.2E-21 2.5E-26 209.2 24.0 285 5-336 4-310 (327)
63 KOG0640 mRNA cleavage stimulat 99.9 9E-22 2E-26 212.9 23.0 311 5-399 106-424 (430)
64 KOG0641 WD40 repeat protein [G 99.9 1.7E-20 3.6E-25 195.2 30.9 310 9-400 30-348 (350)
65 KOG0310 Conserved WD40 repeat- 99.9 1.3E-21 2.9E-26 223.7 24.5 273 11-337 26-303 (487)
66 KOG0283 WD40 repeat-containing 99.9 9.8E-22 2.1E-26 237.9 23.9 308 4-342 259-577 (712)
67 KOG0301 Phospholipase A2-activ 99.9 2.2E-21 4.7E-26 228.8 25.6 278 4-402 7-289 (745)
68 KOG0277 Peroxisomal targeting 99.9 1.4E-21 3E-26 207.4 21.5 268 93-400 36-308 (311)
69 KOG0973 Histone transcription 99.9 1.7E-21 3.7E-26 240.8 25.4 306 6-402 7-356 (942)
70 KOG0300 WD40 repeat-containing 99.9 1.7E-21 3.8E-26 210.8 20.9 326 4-401 141-476 (481)
71 KOG1539 WD repeat protein [Gen 99.9 8E-20 1.7E-24 219.1 35.4 333 4-402 195-607 (910)
72 KOG0275 Conserved WD40 repeat- 99.9 5.4E-22 1.2E-26 214.9 15.0 243 120-401 213-467 (508)
73 KOG1407 WD40 repeat protein [F 99.9 1.1E-20 2.4E-25 201.4 22.6 270 5-330 14-288 (313)
74 KOG0316 Conserved WD40 repeat- 99.9 1.4E-20 3E-25 197.7 22.1 244 119-409 16-265 (307)
75 KOG0268 Sof1-like rRNA process 99.9 1.2E-21 2.6E-26 216.4 14.7 282 4-402 59-346 (433)
76 KOG0305 Anaphase promoting com 99.9 3.2E-20 6.8E-25 220.4 27.0 238 120-403 217-463 (484)
77 KOG2096 WD40 repeat protein [G 99.9 4.1E-20 9E-25 201.0 25.0 296 3-393 78-396 (420)
78 KOG1524 WD40 repeat-containing 99.9 5.1E-18 1.1E-22 194.6 43.0 205 135-395 77-281 (737)
79 KOG0308 Conserved WD40 repeat- 99.9 1E-20 2.3E-25 221.5 21.6 243 10-298 20-287 (735)
80 PTZ00421 coronin; Provisional 99.9 2.2E-19 4.8E-24 220.0 33.7 256 10-343 19-292 (493)
81 KOG1408 WD40 repeat protein [F 99.9 8E-19 1.7E-23 206.0 35.9 454 6-532 73-657 (1080)
82 PTZ00420 coronin; Provisional 99.9 2.2E-19 4.7E-24 221.2 32.9 242 4-326 67-318 (568)
83 KOG0288 WD40 repeat protein Ti 99.9 6.1E-21 1.3E-25 214.0 16.5 281 5-338 169-458 (459)
84 PTZ00421 coronin; Provisional 99.9 3.2E-19 6.9E-24 218.7 32.7 207 159-405 70-294 (493)
85 KOG0289 mRNA splicing factor [ 99.9 6.3E-20 1.4E-24 206.7 24.1 274 12-336 220-499 (506)
86 KOG0299 U3 snoRNP-associated p 99.9 1E-19 2.3E-24 206.8 25.6 310 4-398 135-454 (479)
87 KOG1063 RNA polymerase II elon 99.8 1.1E-19 2.3E-24 214.5 25.3 365 3-402 183-649 (764)
88 KOG3617 WD40 and TPR repeat-co 99.8 3E-19 6.5E-24 212.0 28.7 263 827-1160 715-1033(1416)
89 KOG1538 Uncharacterized conser 99.8 8.9E-18 1.9E-22 195.8 39.4 271 13-341 14-293 (1081)
90 KOG0308 Conserved WD40 repeat- 99.8 4.1E-20 8.9E-25 216.6 20.0 280 62-401 35-327 (735)
91 KOG0310 Conserved WD40 repeat- 99.8 1.4E-19 3E-24 207.3 23.8 253 94-395 47-304 (487)
92 KOG1446 Histone H3 (Lys4) meth 99.8 2E-18 4.3E-23 189.6 31.3 285 4-341 7-303 (311)
93 KOG0277 Peroxisomal targeting 99.8 1E-19 2.2E-24 193.3 20.0 276 15-339 12-307 (311)
94 KOG0283 WD40 repeat-containing 99.8 4.5E-19 9.8E-24 215.0 25.2 246 118-403 265-578 (712)
95 KOG0264 Nucleosome remodeling 99.8 2.3E-19 4.9E-24 204.6 21.0 262 119-402 123-405 (422)
96 KOG1539 WD repeat protein [Gen 99.8 2.2E-18 4.7E-23 207.0 29.8 356 4-401 237-648 (910)
97 KOG0647 mRNA export protein (c 99.8 5.2E-19 1.1E-23 192.1 22.1 273 9-334 25-315 (347)
98 KOG1332 Vesicle coat complex C 99.8 2.1E-19 4.6E-24 190.1 18.1 263 1-341 1-286 (299)
99 KOG1063 RNA polymerase II elon 99.8 1.1E-17 2.5E-22 197.5 34.3 350 3-401 46-437 (764)
100 KOG0299 U3 snoRNP-associated p 99.8 3.9E-19 8.4E-24 202.2 21.2 255 116-402 138-411 (479)
101 PTZ00420 coronin; Provisional 99.8 7E-18 1.5E-22 208.0 33.7 222 94-343 53-295 (568)
102 KOG2048 WD40 repeat protein [G 99.8 8.7E-16 1.9E-20 181.9 49.5 266 93-395 45-314 (691)
103 KOG0640 mRNA cleavage stimulat 99.8 1.2E-19 2.6E-24 196.6 15.2 255 4-340 165-425 (430)
104 KOG3616 Selective LIM binding 99.8 1.6E-18 3.4E-23 203.1 25.2 253 676-1134 327-593 (1636)
105 KOG0643 Translation initiation 99.8 1.6E-18 3.5E-23 185.4 23.1 263 3-296 44-317 (327)
106 KOG0278 Serine/threonine kinas 99.8 1.1E-19 2.3E-24 192.3 13.9 248 4-299 52-300 (334)
107 KOG1036 Mitotic spindle checkp 99.8 1.9E-18 4.1E-23 188.8 24.0 269 10-332 12-292 (323)
108 KOG0305 Anaphase promoting com 99.8 1E-18 2.2E-23 207.7 23.7 242 11-298 217-463 (484)
109 KOG0973 Histone transcription 99.8 2E-18 4.3E-23 213.9 27.1 254 113-402 6-313 (942)
110 KOG0288 WD40 repeat protein Ti 99.8 2.7E-19 5.8E-24 200.9 17.0 260 93-398 195-458 (459)
111 KOG0639 Transducin-like enhanc 99.8 1.3E-18 2.8E-23 198.1 22.3 277 8-394 416-698 (705)
112 KOG0264 Nucleosome remodeling 99.8 1.1E-18 2.3E-23 199.1 21.8 263 3-296 116-404 (422)
113 KOG0650 WD40 repeat nucleolar 99.8 6.7E-19 1.4E-23 204.5 20.2 308 5-338 394-732 (733)
114 KOG0294 WD40 repeat-containing 99.8 2.2E-18 4.8E-23 188.2 22.9 243 4-298 36-283 (362)
115 KOG1407 WD40 repeat protein [F 99.8 3.2E-18 6.9E-23 182.8 23.1 234 6-287 59-293 (313)
116 KOG1332 Vesicle coat complex C 99.8 9.2E-19 2E-23 185.3 18.4 253 120-401 11-286 (299)
117 KOG2055 WD40 repeat protein [G 99.8 3.5E-18 7.6E-23 194.2 23.7 289 11-401 213-512 (514)
118 KOG1408 WD40 repeat protein [F 99.8 5.8E-18 1.3E-22 198.8 25.9 346 14-401 327-713 (1080)
119 KOG0269 WD40 repeat-containing 99.8 1.8E-18 3.8E-23 206.5 20.3 237 123-395 90-335 (839)
120 KOG0289 mRNA splicing factor [ 99.8 5.3E-18 1.1E-22 191.3 21.9 249 4-295 254-505 (506)
121 KOG0300 WD40 repeat-containing 99.8 6.7E-18 1.4E-22 183.2 21.0 226 135-403 126-388 (481)
122 KOG0301 Phospholipase A2-activ 99.8 6.6E-18 1.4E-22 199.7 21.4 236 4-342 50-289 (745)
123 KOG1036 Mitotic spindle checkp 99.8 5.8E-17 1.3E-21 177.3 26.6 244 120-407 13-268 (323)
124 KOG0646 WD40 repeat protein [G 99.8 1.3E-17 2.7E-22 190.5 22.3 230 162-410 79-316 (476)
125 KOG2445 Nuclear pore complex c 99.8 9.5E-17 2.1E-21 175.0 28.0 230 161-401 56-318 (361)
126 KOG0307 Vesicle coat complex C 99.8 1.8E-16 3.9E-21 197.3 34.3 208 164-404 64-287 (1049)
127 KOG1538 Uncharacterized conser 99.8 1.1E-15 2.3E-20 178.7 37.9 245 4-296 46-293 (1081)
128 KOG0647 mRNA export protein (c 99.8 7E-17 1.5E-21 175.7 26.3 267 120-428 27-307 (347)
129 KOG4328 WD40 protein [Function 99.8 3.1E-17 6.8E-22 186.5 23.3 303 4-399 179-493 (498)
130 KOG0641 WD40 repeat protein [G 99.8 2.1E-16 4.6E-21 164.9 26.9 251 4-296 82-349 (350)
131 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 6.7E-16 1.4E-20 176.8 33.9 270 23-343 1-281 (300)
132 KOG1274 WD40 repeat protein [G 99.8 7.6E-17 1.6E-21 196.0 27.1 269 8-331 10-287 (933)
133 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 5.3E-16 1.2E-20 177.6 31.8 264 4-324 24-300 (300)
134 KOG0294 WD40 repeat-containing 99.8 4.9E-17 1.1E-21 177.8 21.5 218 157-403 36-283 (362)
135 KOG0267 Microtubule severing p 99.8 1.6E-18 3.6E-23 205.2 10.3 210 94-335 49-259 (825)
136 KOG0772 Uncharacterized conser 99.7 8.1E-17 1.7E-21 184.7 20.4 256 10-341 213-488 (641)
137 KOG4283 Transcription-coupled 99.7 1.9E-16 4.1E-21 171.2 22.1 309 6-400 38-364 (397)
138 KOG0302 Ribosome Assembly prot 99.7 6.1E-17 1.3E-21 180.3 18.4 222 156-394 203-433 (440)
139 KOG2106 Uncharacterized conser 99.7 2.6E-15 5.7E-20 172.1 30.8 352 5-400 239-625 (626)
140 KOG0267 Microtubule severing p 99.7 4.5E-18 9.8E-23 201.5 8.3 245 94-393 13-261 (825)
141 KOG0646 WD40 repeat protein [G 99.7 1.2E-16 2.5E-21 182.7 19.3 231 11-326 81-331 (476)
142 KOG0269 WD40 repeat-containing 99.7 3.1E-17 6.6E-22 196.0 14.8 243 14-298 90-342 (839)
143 KOG1446 Histone H3 (Lys4) meth 99.7 3.4E-15 7.4E-20 164.4 27.5 245 3-296 48-303 (311)
144 KOG2919 Guanine nucleotide-bin 99.7 1.5E-15 3.3E-20 166.3 23.8 290 12-342 50-368 (406)
145 KOG1034 Transcriptional repres 99.7 1.5E-15 3.1E-20 167.1 21.8 241 132-400 104-382 (385)
146 KOG4378 Nuclear protein COP1 [ 99.7 1.8E-15 3.9E-20 172.7 23.0 290 28-379 7-303 (673)
147 KOG0639 Transducin-like enhanc 99.7 7.9E-16 1.7E-20 175.6 19.8 239 119-399 418-661 (705)
148 KOG0321 WD40 repeat-containing 99.7 1.5E-15 3.3E-20 178.3 22.6 286 86-401 65-391 (720)
149 KOG1274 WD40 repeat protein [G 99.7 5.3E-15 1.2E-19 180.2 27.2 244 120-402 13-263 (933)
150 KOG0268 Sof1-like rRNA process 99.7 4.1E-16 8.8E-21 173.0 15.9 244 4-300 102-349 (433)
151 KOG1007 WD repeat protein TSSC 99.7 5.7E-15 1.2E-19 159.7 24.0 279 93-395 38-356 (370)
152 KOG2096 WD40 repeat protein [G 99.7 7.6E-15 1.6E-19 160.4 24.9 227 97-342 63-309 (420)
153 KOG4283 Transcription-coupled 99.7 6.9E-15 1.5E-19 159.3 23.8 213 118-344 41-279 (397)
154 KOG0650 WD40 repeat nucleolar 99.7 2.5E-15 5.3E-20 175.2 21.7 291 51-398 397-732 (733)
155 KOG0321 WD40 repeat-containing 99.7 2.1E-15 4.5E-20 177.3 21.1 276 4-343 93-393 (720)
156 KOG4378 Nuclear protein COP1 [ 99.7 2.3E-15 5.1E-20 171.8 19.8 269 94-405 11-284 (673)
157 COG2319 FOG: WD40 repeat [Gene 99.7 4.9E-13 1.1E-17 156.2 39.3 326 6-402 60-401 (466)
158 KOG0270 WD40 repeat-containing 99.6 3.9E-15 8.4E-20 169.4 19.2 239 23-302 192-455 (463)
159 KOG0302 Ribosome Assembly prot 99.6 3.7E-15 7.9E-20 166.3 18.6 210 161-402 148-379 (440)
160 KOG0307 Vesicle coat complex C 99.6 9E-16 1.9E-20 191.2 14.5 245 120-401 64-327 (1049)
161 KOG0270 WD40 repeat-containing 99.6 4.5E-15 9.7E-20 168.9 18.7 237 134-406 193-454 (463)
162 KOG1273 WD40 repeat protein [G 99.6 1.8E-14 4E-19 157.4 22.5 284 14-342 26-323 (405)
163 KOG1517 Guanine nucleotide bin 99.6 2.2E-14 4.8E-19 175.7 25.6 299 11-401 1064-1381(1387)
164 KOG1007 WD repeat protein TSSC 99.6 6.2E-15 1.3E-19 159.5 17.4 202 121-337 124-355 (370)
165 KOG1445 Tumor-specific antigen 99.6 1.7E-13 3.6E-18 160.0 29.6 151 264-434 628-785 (1012)
166 KOG2055 WD40 repeat protein [G 99.6 7.1E-14 1.5E-18 159.6 25.7 237 120-390 213-455 (514)
167 KOG1273 WD40 repeat protein [G 99.6 4.4E-14 9.5E-19 154.5 22.9 278 167-535 26-312 (405)
168 KOG2445 Nuclear pore complex c 99.6 3.3E-14 7.2E-19 155.3 21.5 221 160-402 9-257 (361)
169 KOG1963 WD40 repeat protein [G 99.6 8.9E-13 1.9E-17 161.2 35.8 372 3-401 49-487 (792)
170 KOG0303 Actin-binding protein 99.6 5E-14 1.1E-18 158.0 21.4 212 156-405 73-298 (472)
171 KOG0322 G-protein beta subunit 99.6 1.5E-14 3.3E-19 155.1 15.2 287 5-340 8-322 (323)
172 KOG0290 Conserved WD40 repeat- 99.6 3.4E-13 7.4E-18 146.3 24.0 256 121-405 45-322 (364)
173 KOG1034 Transcriptional repres 99.6 2.8E-14 6.1E-19 157.0 15.0 226 94-341 114-381 (385)
174 KOG4227 WD40 repeat protein [G 99.6 8.2E-14 1.8E-18 155.1 18.6 326 5-404 50-390 (609)
175 KOG2041 WD40 repeat protein [G 99.6 8.3E-11 1.8E-15 139.3 44.3 281 10-336 13-330 (1189)
176 KOG1240 Protein kinase contain 99.6 4.6E-13 9.9E-18 166.9 26.7 358 3-399 1040-1431(1431)
177 KOG4328 WD40 protein [Function 99.5 1.5E-13 3.3E-18 156.9 17.8 257 119-404 185-453 (498)
178 KOG1188 WD40 repeat protein [G 99.5 2.3E-13 4.9E-18 150.9 18.4 287 24-400 41-345 (376)
179 KOG0644 Uncharacterized conser 99.5 2.5E-14 5.4E-19 171.6 10.7 280 4-343 183-468 (1113)
180 COG2319 FOG: WD40 repeat [Gene 99.5 7.9E-11 1.7E-15 137.5 40.2 328 4-402 101-443 (466)
181 KOG0642 Cell-cycle nuclear pro 99.5 1.6E-13 3.5E-18 160.3 15.4 258 6-304 289-569 (577)
182 KOG0290 Conserved WD40 repeat- 99.5 5.6E-12 1.2E-16 137.1 23.2 229 93-336 119-358 (364)
183 KOG1334 WD40 repeat protein [G 99.5 3.7E-13 8.1E-18 154.6 14.2 300 4-341 135-466 (559)
184 KOG1188 WD40 repeat protein [G 99.5 1.6E-12 3.4E-17 144.4 17.9 263 4-296 63-346 (376)
185 KOG2919 Guanine nucleotide-bin 99.5 1.1E-12 2.3E-17 144.3 15.9 235 12-287 105-361 (406)
186 KOG0649 WD40 repeat protein [G 99.4 2.4E-11 5.2E-16 129.2 24.2 247 12-341 11-274 (325)
187 KOG4497 Uncharacterized conser 99.4 9.3E-12 2E-16 137.0 20.8 352 125-535 13-380 (447)
188 KOG1963 WD40 repeat protein [G 99.4 2.8E-11 6.1E-16 148.3 26.7 294 9-342 203-539 (792)
189 KOG0644 Uncharacterized conser 99.4 7E-13 1.5E-17 159.4 10.8 222 157-404 183-429 (1113)
190 KOG1587 Cytoplasmic dynein int 99.4 2.9E-11 6.2E-16 148.4 24.8 273 94-402 221-517 (555)
191 KOG1009 Chromatin assembly com 99.4 1.7E-11 3.7E-16 138.8 19.1 253 11-336 13-365 (434)
192 KOG1587 Cytoplasmic dynein int 99.4 3.7E-11 8.1E-16 147.4 22.8 251 11-297 242-517 (555)
193 KOG1310 WD40 repeat protein [G 99.4 1E-11 2.2E-16 144.0 16.5 184 159-402 45-232 (758)
194 PRK11028 6-phosphogluconolacto 99.3 5.3E-10 1.2E-14 131.8 30.9 277 93-401 10-304 (330)
195 KOG0649 WD40 repeat protein [G 99.3 6.5E-11 1.4E-15 126.0 20.2 230 122-394 12-268 (325)
196 KOG1310 WD40 repeat protein [G 99.3 1.8E-11 3.8E-16 142.0 15.4 221 5-250 44-308 (758)
197 PRK11028 6-phosphogluconolacto 99.3 1E-09 2.2E-14 129.4 30.1 254 5-296 29-304 (330)
198 KOG1272 WD40-repeat-containing 99.3 7.7E-12 1.7E-16 143.1 11.4 272 13-394 131-403 (545)
199 KOG0642 Cell-cycle nuclear pro 99.3 2.6E-11 5.7E-16 142.1 15.4 250 118-402 292-562 (577)
200 KOG1445 Tumor-specific antigen 99.3 6.4E-11 1.4E-15 138.8 17.4 206 162-402 625-845 (1012)
201 KOG0303 Actin-binding protein 99.3 6.1E-11 1.3E-15 133.6 16.5 216 6-299 76-297 (472)
202 KOG1517 Guanine nucleotide bin 99.3 1.4E-10 3E-15 143.1 19.9 248 12-298 1110-1383(1387)
203 KOG0771 Prolactin regulatory e 99.2 6.5E-10 1.4E-14 127.2 22.9 192 124-335 148-346 (398)
204 PRK01742 tolB translocation pr 99.2 3.4E-10 7.5E-15 138.4 22.2 220 5-325 197-426 (429)
205 KOG0771 Prolactin regulatory e 99.2 8.1E-11 1.8E-15 134.5 15.0 197 15-296 148-354 (398)
206 KOG1009 Chromatin assembly com 99.2 1.2E-09 2.6E-14 124.0 23.9 163 120-300 13-199 (434)
207 KOG2110 Uncharacterized conser 99.2 1.5E-09 3.3E-14 122.1 24.4 243 9-299 3-251 (391)
208 KOG2394 WD40 protein DMR-N9 [G 99.2 5.6E-10 1.2E-14 130.1 21.5 212 89-324 137-384 (636)
209 KOG4227 WD40 repeat protein [G 99.2 3.2E-10 7E-15 126.9 18.7 248 119-401 55-322 (609)
210 PF02239 Cytochrom_D1: Cytochr 99.2 3.5E-09 7.6E-14 126.4 28.0 298 4-343 29-349 (369)
211 KOG4497 Uncharacterized conser 99.2 2.1E-09 4.5E-14 118.9 23.2 323 16-401 13-391 (447)
212 KOG0322 G-protein beta subunit 99.2 2.6E-10 5.6E-15 123.0 14.7 271 93-400 33-322 (323)
213 KOG2110 Uncharacterized conser 99.2 5.7E-09 1.2E-13 117.6 24.9 236 122-404 7-251 (391)
214 KOG2111 Uncharacterized conser 99.2 1E-08 2.2E-13 113.8 26.2 244 13-297 7-257 (346)
215 PRK01742 tolB translocation pr 99.2 1.5E-09 3.3E-14 132.8 21.9 233 94-380 183-426 (429)
216 KOG1523 Actin-related protein 99.1 2.2E-09 4.8E-14 118.8 19.5 203 120-337 10-230 (361)
217 KOG0974 WD-repeat protein WDR6 99.1 1.3E-09 2.9E-14 135.8 19.9 192 179-403 97-290 (967)
218 KOG1523 Actin-related protein 99.1 3.4E-09 7.3E-14 117.4 19.6 248 4-335 3-270 (361)
219 KOG1334 WD40 repeat protein [G 99.1 9.3E-10 2E-14 127.1 15.5 271 116-402 138-425 (559)
220 KOG2139 WD40 repeat protein [G 99.1 1E-08 2.2E-13 115.0 23.1 195 120-335 140-366 (445)
221 KOG1240 Protein kinase contain 99.1 4.5E-09 9.7E-14 132.2 22.3 271 38-343 1034-1336(1431)
222 KOG2321 WD40 repeat protein [G 99.1 1.8E-08 3.9E-13 118.5 25.3 196 168-398 137-341 (703)
223 KOG2041 WD40 repeat protein [G 99.1 1.5E-06 3.3E-11 104.1 41.1 157 162-341 12-186 (1189)
224 KOG3881 Uncharacterized conser 99.1 5.3E-09 1.2E-13 118.6 19.6 254 11-303 55-327 (412)
225 PRK03629 tolB translocation pr 99.0 3.6E-08 7.9E-13 120.6 26.5 171 124-325 246-428 (429)
226 KOG2394 WD40 protein DMR-N9 [G 99.0 3.9E-09 8.5E-14 123.2 16.2 229 123-379 126-384 (636)
227 KOG1409 Uncharacterized conser 99.0 1.4E-08 2.9E-13 113.5 19.5 250 4-298 17-272 (404)
228 KOG1524 WD40 repeat-containing 99.0 1.5E-09 3.1E-14 126.1 12.1 185 6-293 99-283 (737)
229 KOG0974 WD-repeat protein WDR6 99.0 1.1E-08 2.4E-13 127.7 20.2 195 122-343 89-290 (967)
230 KOG3881 Uncharacterized conser 99.0 1.6E-08 3.4E-13 114.8 18.9 211 7-251 101-326 (412)
231 KOG2111 Uncharacterized conser 99.0 1E-07 2.2E-12 106.0 24.6 179 33-247 75-258 (346)
232 KOG2139 WD40 repeat protein [G 99.0 2.8E-08 6.1E-13 111.5 20.4 195 120-342 98-310 (445)
233 PF04762 IKI3: IKI3 family; I 99.0 0.00029 6.3E-09 93.4 61.1 232 212-508 209-455 (928)
234 KOG1064 RAVE (regulator of V-A 99.0 2.6E-09 5.6E-14 137.7 13.6 227 7-335 2204-2438(2439)
235 PRK04922 tolB translocation pr 99.0 6.4E-08 1.4E-12 118.7 25.2 171 123-324 250-432 (433)
236 KOG1272 WD40-repeat-containing 98.9 2E-09 4.3E-14 123.8 8.5 226 123-399 132-360 (545)
237 PF08662 eIF2A: Eukaryotic tra 98.9 9.2E-08 2E-12 104.3 21.0 153 124-303 9-185 (194)
238 PRK02889 tolB translocation pr 98.9 1.7E-07 3.8E-12 114.6 25.4 172 123-325 242-425 (427)
239 PRK05137 tolB translocation pr 98.9 2.9E-07 6.2E-12 113.1 27.0 204 5-300 195-416 (435)
240 PF02239 Cytochrom_D1: Cytochr 98.9 5.3E-07 1.2E-11 107.9 27.7 322 26-409 9-355 (369)
241 PRK03629 tolB translocation pr 98.9 2.9E-07 6.3E-12 112.7 25.3 204 95-335 179-395 (429)
242 KOG0280 Uncharacterized conser 98.8 1.9E-07 4.1E-12 102.8 19.7 270 94-399 45-331 (339)
243 KOG2321 WD40 repeat protein [G 98.8 2.3E-07 4.9E-12 109.4 20.5 252 120-411 51-312 (703)
244 KOG1354 Serine/threonine prote 98.8 2.1E-07 4.5E-12 104.0 18.3 269 11-299 25-362 (433)
245 PRK04922 tolB translocation pr 98.8 5.3E-07 1.2E-11 110.6 23.8 197 95-329 184-393 (433)
246 KOG1354 Serine/threonine prote 98.7 8.1E-08 1.8E-12 107.3 13.5 255 120-400 25-358 (433)
247 KOG4547 WD40 repeat-containing 98.7 3.8E-07 8.2E-12 108.8 18.7 212 20-296 2-220 (541)
248 KOG4190 Uncharacterized conser 98.7 4.2E-08 9.1E-13 113.9 10.2 287 2-336 726-1029(1034)
249 TIGR02800 propeller_TolB tol-p 98.7 2E-06 4.4E-11 104.7 25.7 156 123-303 236-403 (417)
250 KOG0280 Uncharacterized conser 98.7 9.7E-07 2.1E-11 97.3 19.3 160 123-298 124-286 (339)
251 COG2706 3-carboxymuconate cycl 98.7 1.6E-05 3.4E-10 90.8 29.4 224 94-335 15-264 (346)
252 PRK05137 tolB translocation pr 98.7 4.9E-06 1.1E-10 102.2 27.5 155 146-330 186-349 (435)
253 PF08662 eIF2A: Eukaryotic tra 98.7 1.1E-06 2.4E-11 95.9 18.8 146 169-342 10-180 (194)
254 COG4946 Uncharacterized protei 98.7 0.00056 1.2E-08 79.9 41.0 168 131-329 331-503 (668)
255 PRK02889 tolB translocation pr 98.6 2E-06 4.2E-11 105.5 22.9 178 120-329 195-385 (427)
256 KOG1912 WD40 repeat protein [G 98.6 4.3E-06 9.3E-11 101.6 23.9 347 4-405 48-555 (1062)
257 PRK04792 tolB translocation pr 98.6 5.6E-06 1.2E-10 102.0 25.5 170 124-324 265-446 (448)
258 PRK00178 tolB translocation pr 98.6 6.8E-06 1.5E-10 100.8 26.1 171 123-324 245-427 (430)
259 PF10282 Lactonase: Lactonase, 98.6 7.6E-05 1.6E-09 89.0 33.8 251 123-400 39-321 (345)
260 KOG3617 WD40 and TPR repeat-co 98.6 8.8E-05 1.9E-09 90.9 32.8 160 935-1143 711-871 (1416)
261 TIGR02658 TTQ_MADH_Hv methylam 98.6 4.1E-05 8.8E-10 90.3 29.1 241 19-304 53-338 (352)
262 PF10282 Lactonase: Lactonase, 98.5 0.00012 2.7E-09 87.2 33.6 256 12-302 37-330 (345)
263 KOG4547 WD40 repeat-containing 98.5 3.3E-06 7.2E-11 100.9 19.2 173 179-380 3-195 (541)
264 KOG2315 Predicted translation 98.5 5E-05 1.1E-09 90.5 28.2 321 11-402 34-391 (566)
265 TIGR03300 assembly_YfgL outer 98.5 2.5E-05 5.5E-10 94.0 26.5 286 23-339 65-375 (377)
266 KOG3914 WD repeat protein WDR4 98.5 1.5E-06 3.3E-11 99.7 14.2 84 160-252 147-230 (390)
267 TIGR02800 propeller_TolB tol-p 98.4 2.1E-05 4.6E-10 95.8 23.8 197 95-329 170-379 (417)
268 COG2706 3-carboxymuconate cycl 98.4 0.00065 1.4E-08 77.9 33.1 183 141-342 15-222 (346)
269 TIGR03300 assembly_YfgL outer 98.4 0.00018 3.9E-09 86.6 30.6 216 93-343 113-340 (377)
270 KOG2695 WD40 repeat protein [G 98.4 9.3E-07 2E-11 99.1 9.7 169 136-323 228-401 (425)
271 KOG0309 Conserved WD40 repeat- 98.4 1E-06 2.3E-11 106.1 10.4 259 120-402 24-340 (1081)
272 KOG1409 Uncharacterized conser 98.4 4.6E-06 1E-10 93.7 14.8 82 156-245 189-270 (404)
273 PRK01029 tolB translocation pr 98.4 6.3E-05 1.4E-09 92.2 26.3 159 123-302 233-409 (428)
274 PRK00178 tolB translocation pr 98.4 4.9E-05 1.1E-09 93.3 25.0 197 96-329 180-388 (430)
275 KOG1064 RAVE (regulator of V-A 98.4 1.1E-06 2.4E-11 114.4 10.5 196 162-410 2206-2407(2439)
276 KOG3914 WD repeat protein WDR4 98.3 4E-06 8.6E-11 96.3 13.3 161 123-304 65-231 (390)
277 KOG2315 Predicted translation 98.3 0.00012 2.5E-09 87.4 25.5 261 13-303 75-396 (566)
278 PRK01029 tolB translocation pr 98.3 7E-05 1.5E-09 91.8 24.9 182 121-329 185-385 (428)
279 COG5354 Uncharacterized protei 98.3 0.00022 4.8E-09 84.2 26.9 292 10-342 31-349 (561)
280 PLN02919 haloacid dehalogenase 98.3 0.00016 3.5E-09 97.4 29.8 167 123-300 685-892 (1057)
281 PRK04792 tolB translocation pr 98.3 7.7E-05 1.7E-09 92.0 24.5 179 120-329 217-407 (448)
282 TIGR02658 TTQ_MADH_Hv methylam 98.3 0.0011 2.5E-08 78.3 31.5 288 22-343 11-332 (352)
283 KOG1912 WD40 repeat protein [G 98.2 7.9E-05 1.7E-09 91.0 21.6 162 122-296 17-186 (1062)
284 KOG2314 Translation initiation 98.2 0.00051 1.1E-08 81.7 27.2 182 123-332 213-411 (698)
285 KOG1832 HIV-1 Vpr-binding prot 98.2 1.3E-06 2.9E-11 106.6 5.8 205 157-411 1094-1301(1516)
286 COG5354 Uncharacterized protei 98.2 0.00065 1.4E-08 80.4 26.7 183 120-329 32-237 (561)
287 KOG2314 Translation initiation 98.2 0.00036 7.8E-09 82.9 24.4 319 15-392 214-559 (698)
288 KOG0309 Conserved WD40 repeat- 98.1 8.7E-06 1.9E-10 98.4 10.6 297 12-343 25-341 (1081)
289 KOG4714 Nucleoporin [Nuclear s 98.1 3.1E-05 6.6E-10 84.5 13.6 145 180-341 100-252 (319)
290 PF00400 WD40: WD domain, G-be 98.1 7.7E-06 1.7E-10 64.6 6.1 36 4-39 4-39 (39)
291 PF04762 IKI3: IKI3 family; I 98.1 0.026 5.7E-07 75.3 41.7 262 11-298 120-458 (928)
292 KOG4532 WD40-like repeat conta 98.1 0.00078 1.7E-08 74.0 22.5 194 135-342 130-332 (344)
293 KOG4714 Nucleoporin [Nuclear s 98.1 2.1E-05 4.6E-10 85.6 10.6 147 135-294 152-316 (319)
294 KOG1832 HIV-1 Vpr-binding prot 98.0 5.5E-06 1.2E-10 101.4 6.6 220 4-331 1094-1318(1516)
295 KOG2114 Vacuolar assembly/sort 98.0 0.0088 1.9E-07 75.0 33.2 165 887-1126 320-491 (933)
296 PRK11138 outer membrane biogen 98.0 0.0013 2.7E-08 80.0 24.8 137 181-341 256-392 (394)
297 PLN02919 haloacid dehalogenase 97.9 0.0043 9.4E-08 84.0 31.9 209 123-343 626-890 (1057)
298 KOG2695 WD40 repeat protein [G 97.9 4.3E-05 9.3E-10 86.1 9.9 144 120-273 252-402 (425)
299 PF08450 SGL: SMP-30/Gluconola 97.9 0.008 1.7E-07 67.9 28.6 182 123-327 42-238 (246)
300 PF13360 PQQ_2: PQQ-like domai 97.9 0.0039 8.4E-08 69.6 25.6 220 31-303 1-237 (238)
301 KOG1275 PAB-dependent poly(A) 97.9 0.00028 6.1E-09 88.0 17.2 139 133-295 148-295 (1118)
302 COG5170 CDC55 Serine/threonine 97.8 9.7E-05 2.1E-09 82.0 11.1 210 120-343 26-311 (460)
303 COG5170 CDC55 Serine/threonine 97.8 0.0002 4.3E-09 79.6 13.3 253 11-295 26-366 (460)
304 PF15492 Nbas_N: Neuroblastoma 97.8 0.002 4.4E-08 72.1 20.8 208 14-253 46-267 (282)
305 PF15492 Nbas_N: Neuroblastoma 97.8 0.0061 1.3E-07 68.3 23.9 231 126-403 3-261 (282)
306 KOG1920 IkappaB kinase complex 97.7 0.00028 6E-09 90.7 14.4 166 906-1129 885-1057(1265)
307 PRK11138 outer membrane biogen 97.7 0.022 4.7E-07 69.3 30.0 276 23-343 69-355 (394)
308 KOG4532 WD40-like repeat conta 97.7 0.0021 4.6E-08 70.7 18.4 208 168-404 71-285 (344)
309 KOG4190 Uncharacterized conser 97.7 0.00029 6.3E-09 82.8 12.2 193 93-306 755-958 (1034)
310 PF07433 DUF1513: Protein of u 97.7 0.032 6.9E-07 64.4 28.0 242 12-342 5-284 (305)
311 KOG2066 Vacuolar assembly/sort 97.6 0.0021 4.5E-08 79.9 19.4 185 12-245 40-233 (846)
312 PRK04043 tolB translocation pr 97.6 0.011 2.3E-07 72.5 25.1 194 13-246 189-401 (419)
313 PF04053 Coatomer_WDAD: Coatom 97.6 0.00012 2.5E-09 89.5 7.7 61 687-751 111-173 (443)
314 PF00400 WD40: WD domain, G-be 97.6 0.00022 4.7E-09 56.3 6.3 39 201-243 1-39 (39)
315 PF07433 DUF1513: Protein of u 97.5 0.011 2.3E-07 68.2 21.5 199 17-238 56-278 (305)
316 COG4946 Uncharacterized protei 97.5 0.14 3.1E-06 60.6 30.1 349 5-402 72-478 (668)
317 KOG1008 Uncharacterized conser 97.4 6.2E-05 1.3E-09 90.6 2.5 215 164-404 56-278 (783)
318 PRK04043 tolB translocation pr 97.4 0.013 2.9E-07 71.6 22.6 175 122-329 189-382 (419)
319 KOG2114 Vacuolar assembly/sort 97.4 0.013 2.8E-07 73.6 21.9 203 18-247 30-245 (933)
320 PF08450 SGL: SMP-30/Gluconola 97.4 0.051 1.1E-06 61.4 25.0 224 125-388 4-244 (246)
321 PF13360 PQQ_2: PQQ-like domai 97.3 0.015 3.2E-07 64.9 20.2 189 22-250 35-235 (238)
322 KOG2066 Vacuolar assembly/sort 97.3 0.0091 2E-07 74.5 19.5 187 121-341 40-233 (846)
323 KOG1920 IkappaB kinase complex 97.3 0.05 1.1E-06 70.9 26.6 115 169-299 200-325 (1265)
324 KOG0882 Cyclophilin-related pe 97.3 0.0021 4.6E-08 75.0 12.3 173 120-306 53-241 (558)
325 PF08596 Lgl_C: Lethal giant l 97.1 0.069 1.5E-06 64.7 23.8 278 13-330 3-322 (395)
326 KOG3621 WD40 repeat-containing 97.1 0.014 3.1E-07 72.0 17.7 113 178-297 42-155 (726)
327 PF11768 DUF3312: Protein of u 96.9 0.17 3.7E-06 62.1 24.4 90 194-297 239-330 (545)
328 KOG4649 PQQ (pyrrolo-quinoline 96.9 0.13 2.7E-06 57.1 20.9 225 23-295 63-299 (354)
329 KOG1645 RING-finger-containing 96.9 0.019 4.1E-07 66.7 15.1 49 5-53 187-236 (463)
330 KOG4649 PQQ (pyrrolo-quinoline 96.9 0.08 1.7E-06 58.6 19.1 111 129-252 19-130 (354)
331 KOG1645 RING-finger-containing 96.8 0.037 8.1E-07 64.4 17.0 94 193-299 175-269 (463)
332 KOG3616 Selective LIM binding 96.8 0.0052 1.1E-07 74.9 9.8 214 910-1161 741-975 (1636)
333 PRK02888 nitrous-oxide reducta 96.8 0.27 5.8E-06 61.8 24.7 99 191-297 296-405 (635)
334 KOG3621 WD40 repeat-containing 96.7 0.15 3.2E-06 63.4 21.7 137 10-219 32-177 (726)
335 KOG1008 Uncharacterized conser 96.6 0.0017 3.8E-08 78.6 4.3 199 120-341 56-275 (783)
336 KOG0882 Cyclophilin-related pe 96.6 0.01 2.3E-07 69.5 10.3 224 161-409 6-239 (558)
337 smart00320 WD40 WD40 repeats. 96.6 0.0044 9.6E-08 46.1 5.0 36 4-39 5-40 (40)
338 PRK02888 nitrous-oxide reducta 96.5 0.11 2.4E-06 65.1 18.7 190 18-246 199-405 (635)
339 KOG1275 PAB-dependent poly(A) 96.4 0.034 7.4E-07 70.2 13.8 160 13-198 179-341 (1118)
340 PF00930 DPPIV_N: Dipeptidyl p 96.4 0.58 1.3E-05 56.1 24.4 268 20-329 1-342 (353)
341 PF06977 SdiA-regulated: SdiA- 96.4 0.36 7.8E-06 54.8 20.8 205 120-338 21-245 (248)
342 cd00216 PQQ_DH Dehydrogenases 96.3 0.55 1.2E-05 58.9 24.6 105 183-305 303-433 (488)
343 cd00216 PQQ_DH Dehydrogenases 96.3 2.4 5.3E-05 53.2 29.8 112 189-304 173-327 (488)
344 PF06433 Me-amine-dh_H: Methyl 96.3 0.88 1.9E-05 53.4 23.4 246 16-305 40-329 (342)
345 PF00780 CNH: CNH domain; Int 96.1 2.3 5E-05 48.7 26.5 231 22-304 6-263 (275)
346 PF11768 DUF3312: Protein of u 95.9 0.081 1.8E-06 64.8 13.6 75 162-247 257-331 (545)
347 PLN03218 maturation of RBCL 1; 95.8 0.17 3.8E-06 68.5 17.3 227 911-1143 447-714 (1060)
348 PLN03081 pentatricopeptide (PP 95.7 0.096 2.1E-06 68.6 14.2 168 911-1084 269-454 (697)
349 PF06977 SdiA-regulated: SdiA- 95.7 1.9 4E-05 49.1 22.5 200 4-233 14-239 (248)
350 KOG1897 Damage-specific DNA bi 95.7 11 0.00024 49.3 53.0 228 93-344 380-618 (1096)
351 PRK11788 tetratricopeptide rep 95.7 0.18 4E-06 60.6 15.5 206 910-1149 116-354 (389)
352 PLN03218 maturation of RBCL 1; 95.4 0.11 2.3E-06 70.4 13.5 70 911-981 589-677 (1060)
353 PF08553 VID27: VID27 cytoplas 95.0 0.3 6.4E-06 63.4 14.9 98 135-244 545-646 (794)
354 PF03178 CPSF_A: CPSF A subuni 95.0 4.8 0.0001 47.5 24.4 186 33-246 2-203 (321)
355 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.0 8.5 0.00018 48.9 27.7 28 24-51 121-148 (527)
356 PF14783 BBS2_Mid: Ciliary BBS 95.0 0.89 1.9E-05 44.9 14.6 107 167-292 2-110 (111)
357 PF00930 DPPIV_N: Dipeptidyl p 95.0 2.3 5E-05 51.0 21.7 253 11-283 42-344 (353)
358 smart00320 WD40 WD40 repeats. 94.9 0.076 1.6E-06 39.1 5.8 39 201-243 2-40 (40)
359 PF14583 Pectate_lyase22: Olig 94.8 6.8 0.00015 47.1 24.2 176 144-340 170-380 (386)
360 PLN03081 pentatricopeptide (PP 94.8 0.29 6.2E-06 64.2 14.4 90 1019-1111 291-386 (697)
361 PRK11447 cellulose synthase su 94.7 0.95 2.1E-05 62.9 19.9 121 1019-1143 604-741 (1157)
362 PF14783 BBS2_Mid: Ciliary BBS 94.7 0.92 2E-05 44.8 13.8 101 215-337 2-108 (111)
363 PLN03077 Protein ECB2; Provisi 94.7 0.36 7.7E-06 64.9 15.1 136 911-1083 333-482 (857)
364 PF05096 Glu_cyclase_2: Glutam 94.6 3.2 6.9E-05 47.3 19.8 185 13-233 46-249 (264)
365 PF13429 TPR_15: Tetratricopep 94.4 0.14 3E-06 59.1 9.0 168 909-1111 52-240 (280)
366 COG3386 Gluconolactonase [Carb 94.4 5.1 0.00011 47.1 21.9 214 18-273 31-264 (307)
367 COG0823 TolB Periplasmic compo 94.3 1.1 2.3E-05 55.2 16.7 169 6-206 187-365 (425)
368 PF08553 VID27: VID27 cytoplas 94.2 0.67 1.4E-05 60.3 15.2 140 180-336 492-640 (794)
369 PRK10747 putative protoheme IX 94.1 0.84 1.8E-05 55.7 15.3 223 909-1148 126-396 (398)
370 PRK09782 bacteriophage N4 rece 94.0 0.25 5.4E-06 66.6 11.2 89 1019-1111 610-703 (987)
371 KOG4441 Proteins containing BT 94.0 3.3 7.1E-05 53.0 20.7 235 22-299 284-549 (571)
372 PF04841 Vps16_N: Vps16, N-ter 93.9 21 0.00047 43.8 27.1 53 164-221 216-268 (410)
373 KOG4640 Anaphase-promoting com 93.8 0.25 5.3E-06 60.9 9.7 78 164-251 20-98 (665)
374 PF03178 CPSF_A: CPSF A subuni 93.7 3 6.5E-05 49.2 18.6 143 133-296 42-202 (321)
375 KOG2079 Vacuolar assembly/sort 93.6 0.21 4.6E-06 64.6 9.1 101 135-244 101-202 (1206)
376 COG3063 PilF Tfp pilus assembl 93.6 0.23 5E-06 54.7 8.0 150 915-1149 90-242 (250)
377 COG3391 Uncharacterized conser 93.5 14 0.00031 44.8 24.3 203 15-251 77-289 (381)
378 KOG2076 RNA polymerase III tra 93.5 0.62 1.3E-05 59.8 12.6 26 1019-1044 208-233 (895)
379 PF04841 Vps16_N: Vps16, N-ter 93.4 25 0.00055 43.2 27.8 62 180-249 189-250 (410)
380 PF14583 Pectate_lyase22: Olig 93.2 24 0.00053 42.5 26.4 186 120-329 35-252 (386)
381 KOG0985 Vesicle coat protein c 93.1 0.36 7.7E-06 62.0 9.7 146 914-1109 1033-1190(1666)
382 TIGR02917 PEP_TPR_lipo putativ 92.9 0.77 1.7E-05 60.8 13.4 169 907-1109 28-217 (899)
383 COG3490 Uncharacterized protei 92.7 3.6 7.9E-05 46.7 15.7 203 18-243 120-346 (366)
384 PHA02713 hypothetical protein; 92.6 7.9 0.00017 49.5 21.1 146 131-299 351-536 (557)
385 KOG2444 WD40 repeat protein [G 92.6 0.25 5.3E-06 54.3 6.4 69 181-251 70-138 (238)
386 KOG2079 Vacuolar assembly/sort 92.5 0.36 7.9E-06 62.6 8.7 106 180-296 98-203 (1206)
387 COG0823 TolB Periplasmic compo 92.4 6.8 0.00015 48.2 19.5 134 96-248 219-361 (425)
388 PLN03077 Protein ECB2; Provisi 92.2 2.1 4.6E-05 57.6 16.2 195 911-1112 434-652 (857)
389 KOG4640 Anaphase-promoting com 92.2 0.47 1E-05 58.6 8.8 91 120-219 20-112 (665)
390 PF06433 Me-amine-dh_H: Methyl 92.1 9.5 0.00021 45.1 19.0 56 192-252 270-327 (342)
391 PF02897 Peptidase_S9_N: Proly 92.1 35 0.00077 41.6 28.2 257 13-300 125-408 (414)
392 PRK11788 tetratricopeptide rep 91.9 2.5 5.4E-05 50.8 14.9 171 910-1111 78-275 (389)
393 KOG1897 Damage-specific DNA bi 91.8 56 0.0012 43.3 27.3 141 181-341 787-940 (1096)
394 PF12894 Apc4_WD40: Anaphase-p 91.8 0.38 8.2E-06 40.1 5.2 36 10-46 10-45 (47)
395 KOG1924 RhoA GTPase effector D 91.7 9.1 0.0002 48.7 18.8 22 1025-1046 372-393 (1102)
396 TIGR00990 3a0801s09 mitochondr 91.5 1.6 3.4E-05 56.5 13.3 91 1019-1110 468-567 (615)
397 PF10168 Nup88: Nuclear pore c 91.4 18 0.00038 47.5 22.3 79 120-201 84-181 (717)
398 TIGR03075 PQQ_enz_alc_DH PQQ-d 91.4 51 0.0011 42.0 31.0 58 192-250 272-338 (527)
399 KOG4499 Ca2+-binding protein R 91.3 12 0.00025 41.7 17.1 88 227-324 170-263 (310)
400 TIGR02917 PEP_TPR_lipo putativ 91.2 1.9 4.1E-05 57.1 14.1 166 910-1111 610-796 (899)
401 PF14655 RAB3GAP2_N: Rab3 GTPa 91.2 7.6 0.00017 47.4 17.7 268 125-416 6-413 (415)
402 KOG2395 Protein involved in va 91.1 1.9 4.2E-05 52.4 12.0 100 135-245 397-500 (644)
403 TIGR02521 type_IV_pilW type IV 91.0 7.9 0.00017 41.7 16.5 90 1019-1110 100-194 (234)
404 KOG2395 Protein involved in va 90.6 5 0.00011 49.1 14.8 134 184-337 349-494 (644)
405 COG3391 Uncharacterized conser 90.5 17 0.00038 44.1 20.2 169 13-208 117-292 (381)
406 COG3386 Gluconolactonase [Carb 90.5 31 0.00067 40.7 21.4 201 93-323 45-263 (307)
407 PRK07764 DNA polymerase III su 90.1 42 0.00092 44.9 24.4 15 1031-1045 260-274 (824)
408 KOG0566 Inositol-1,4,5-triphos 90.1 1.5 3.4E-05 56.5 10.7 74 883-975 714-791 (1080)
409 COG3490 Uncharacterized protei 90.0 23 0.0005 40.6 18.4 237 128-403 43-312 (366)
410 PHA02713 hypothetical protein; 89.9 16 0.00034 46.8 19.9 185 131-343 303-535 (557)
411 KOG4441 Proteins containing BT 89.8 13 0.00028 47.7 19.0 143 134-299 286-455 (571)
412 COG3204 Uncharacterized protei 89.8 33 0.00072 39.6 19.8 168 120-304 85-270 (316)
413 PF00780 CNH: CNH domain; Int 88.7 49 0.0011 37.7 26.1 152 131-303 6-172 (275)
414 PF12234 Rav1p_C: RAVE protein 88.5 7.1 0.00015 49.9 14.9 110 180-295 40-155 (631)
415 TIGR00990 3a0801s09 mitochondr 88.4 5.2 0.00011 51.8 14.4 164 913-1111 306-493 (615)
416 KOG1840 Kinesin light chain [C 88.4 1.2 2.5E-05 55.7 7.9 161 910-1122 208-391 (508)
417 PRK10370 formate-dependent nit 88.4 2.6 5.6E-05 46.3 9.9 89 1019-1111 74-170 (198)
418 PHA03247 large tegument protei 88.3 14 0.00029 53.2 18.1 7 957-963 804-810 (3151)
419 KOG2003 TPR repeat-containing 88.3 3.9 8.4E-05 48.7 11.5 111 902-1044 420-550 (840)
420 PF05096 Glu_cyclase_2: Glutam 88.3 14 0.00029 42.4 15.6 120 165-305 45-166 (264)
421 TIGR02521 type_IV_pilW type IV 88.3 7.8 0.00017 41.7 13.8 143 910-1085 40-198 (234)
422 PRK10049 pgaA outer membrane p 88.2 3.3 7.2E-05 55.0 12.6 181 909-1110 245-452 (765)
423 PF14870 PSII_BNR: Photosynthe 88.0 45 0.00097 39.2 20.2 195 120-337 103-298 (302)
424 PRK14950 DNA polymerase III su 88.0 32 0.0007 44.3 20.8 105 1030-1137 211-335 (585)
425 PRK15174 Vi polysaccharide exp 87.9 4.8 0.0001 52.5 13.6 194 910-1111 119-344 (656)
426 PF09976 TPR_21: Tetratricopep 87.8 1.5 3.2E-05 45.4 7.2 26 1019-1044 119-144 (145)
427 PRK12370 invasion protein regu 87.6 3.2 7E-05 53.0 11.6 43 910-952 347-395 (553)
428 PF02897 Peptidase_S9_N: Proly 87.4 79 0.0017 38.6 26.3 226 59-327 130-383 (414)
429 COG3204 Uncharacterized protei 86.9 62 0.0013 37.5 19.5 168 7-200 81-264 (316)
430 PRK10747 putative protoheme IX 86.7 4 8.7E-05 49.8 11.3 109 909-1048 92-217 (398)
431 PF05694 SBP56: 56kDa selenium 86.3 19 0.00042 43.8 16.0 212 180-402 86-343 (461)
432 TIGR00540 hemY_coli hemY prote 85.9 4.8 0.0001 49.3 11.5 169 909-1112 92-290 (409)
433 KOG2076 RNA polymerase III tra 85.5 12 0.00026 48.7 14.4 80 1019-1119 174-262 (895)
434 PF04733 Coatomer_E: Coatomer 85.3 4.7 0.0001 47.1 10.4 168 901-1111 35-227 (290)
435 PRK11447 cellulose synthase su 85.3 6.2 0.00013 55.1 13.3 89 1019-1111 638-737 (1157)
436 PF08728 CRT10: CRT10; InterP 85.2 13 0.00029 48.0 14.8 114 84-199 113-246 (717)
437 COG3823 Glutamine cyclotransfe 85.1 28 0.00061 38.2 14.9 175 22-233 55-247 (262)
438 PRK13616 lipoprotein LpqB; Pro 84.9 64 0.0014 41.6 21.0 72 164-245 447-525 (591)
439 PF07995 GSDH: Glucose / Sorbo 84.8 94 0.002 37.0 24.2 79 257-338 247-330 (331)
440 PF12894 Apc4_WD40: Anaphase-p 84.6 2.2 4.9E-05 35.6 5.2 34 164-203 11-44 (47)
441 PF12234 Rav1p_C: RAVE protein 84.6 13 0.00028 47.6 14.4 105 225-339 39-154 (631)
442 PRK12370 invasion protein regu 84.5 9 0.00019 49.0 13.3 88 1019-1110 339-431 (553)
443 PRK15174 Vi polysaccharide exp 84.4 14 0.00031 48.2 15.3 88 1019-1110 285-377 (656)
444 KOG2444 WD40 repeat protein [G 84.0 3.2 7E-05 45.9 7.5 103 135-246 72-178 (238)
445 PRK13616 lipoprotein LpqB; Pro 83.8 31 0.00067 44.4 17.5 151 164-341 349-525 (591)
446 PF08596 Lgl_C: Lethal giant l 83.4 14 0.0003 45.1 13.6 122 166-296 3-173 (395)
447 PF10168 Nup88: Nuclear pore c 83.1 1E+02 0.0022 40.7 21.9 28 165-198 85-112 (717)
448 PF05694 SBP56: 56kDa selenium 83.0 35 0.00076 41.7 16.1 106 190-298 221-344 (461)
449 PRK08691 DNA polymerase III su 82.9 1.3E+02 0.0029 39.3 22.3 34 1130-1163 322-357 (709)
450 PF15390 DUF4613: Domain of un 82.1 20 0.00044 44.8 13.9 102 93-200 80-187 (671)
451 KOG1155 Anaphase-promoting com 81.6 14 0.00031 44.8 12.1 32 1019-1050 433-464 (559)
452 PF13429 TPR_15: Tetratricopep 81.1 0.85 1.8E-05 52.6 2.0 141 933-1111 12-172 (280)
453 KOG1916 Nuclear protein, conta 81.0 0.79 1.7E-05 58.4 1.7 131 164-301 180-328 (1283)
454 PF15390 DUF4613: Domain of un 80.7 1.7E+02 0.0037 37.1 23.4 151 85-247 20-188 (671)
455 KOG0547 Translocase of outer m 80.6 14 0.0003 45.1 11.6 96 1019-1123 463-569 (606)
456 PRK14959 DNA polymerase III su 80.6 1.9E+02 0.0041 37.5 22.5 23 1119-1141 318-340 (624)
457 COG5010 TadD Flp pilus assembl 80.5 11 0.00024 42.6 10.3 87 1019-1109 135-226 (257)
458 PRK15359 type III secretion sy 79.9 20 0.00044 37.1 11.6 28 1019-1046 59-86 (144)
459 PF14781 BBS2_N: Ciliary BBSom 78.8 79 0.0017 32.6 14.7 114 178-301 7-130 (136)
460 TIGR03606 non_repeat_PQQ dehyd 78.2 1.3E+02 0.0029 37.4 19.5 114 213-332 30-164 (454)
461 PHA03098 kelch-like protein; P 78.1 82 0.0018 40.0 18.7 65 180-248 437-514 (534)
462 PHA03098 kelch-like protein; P 78.0 56 0.0012 41.5 17.1 145 135-299 297-467 (534)
463 KOG0550 Molecular chaperone (D 77.6 7.8 0.00017 46.3 8.3 89 1019-1115 250-351 (486)
464 TIGR03074 PQQ_membr_DH membran 77.5 2.5E+02 0.0054 37.5 22.9 30 23-52 194-223 (764)
465 PF02333 Phytase: Phytase; In 77.4 1.5E+02 0.0032 36.1 19.0 205 178-401 65-290 (381)
466 PRK15179 Vi polysaccharide bio 77.1 12 0.00026 48.9 10.8 42 910-951 95-142 (694)
467 PF07995 GSDH: Glucose / Sorbo 76.9 1.1E+02 0.0023 36.6 18.0 110 216-332 5-132 (331)
468 KOG3630 Nuclear pore complex, 76.7 34 0.00075 45.7 14.1 137 179-329 110-258 (1405)
469 KOG1916 Nuclear protein, conta 76.4 2.6 5.6E-05 54.1 4.2 121 160-296 128-265 (1283)
470 PRK10049 pgaA outer membrane p 76.3 93 0.002 41.6 19.0 45 909-953 23-73 (765)
471 TIGR03074 PQQ_membr_DH membran 76.0 2.8E+02 0.0061 37.1 22.7 124 181-306 194-354 (764)
472 PHA02790 Kelch-like protein; P 75.0 89 0.0019 39.2 17.5 141 134-299 273-426 (480)
473 KOG4499 Ca2+-binding protein R 74.8 1.5E+02 0.0033 33.4 16.7 102 123-232 160-271 (310)
474 KOG1128 Uncharacterized conser 74.7 8.6 0.00019 48.9 8.0 162 913-1111 436-613 (777)
475 PRK15359 type III secretion sy 74.0 10 0.00022 39.4 7.3 26 1019-1044 93-118 (144)
476 KOG3771 Amphiphysin [Intracell 73.0 1.5E+02 0.0033 36.4 17.5 15 1030-1044 162-176 (460)
477 PF07719 TPR_2: Tetratricopept 72.9 6.6 0.00014 29.3 4.3 26 1019-1044 2-27 (34)
478 COG2956 Predicted N-acetylgluc 72.8 21 0.00045 41.7 9.8 123 915-1088 155-281 (389)
479 PHA02790 Kelch-like protein; P 72.7 61 0.0013 40.7 15.2 144 131-298 318-472 (480)
480 smart00299 CLH Clathrin heavy 72.5 26 0.00057 35.7 10.0 69 1070-1145 67-137 (140)
481 TIGR00540 hemY_coli hemY prote 72.4 44 0.00096 40.9 13.7 220 908-1141 125-398 (409)
482 PF10313 DUF2415: Uncharacteri 72.1 12 0.00026 30.7 5.6 31 12-42 1-34 (43)
483 PF14727 PHTB1_N: PTHB1 N-term 72.1 2.5E+02 0.0055 34.7 27.4 61 131-199 143-204 (418)
484 TIGR02604 Piru_Ver_Nterm putat 71.9 1.4E+02 0.0029 36.2 17.5 146 165-331 14-200 (367)
485 COG4235 Cytochrome c biogenesi 71.2 18 0.00038 41.9 8.9 87 1019-1110 157-252 (287)
486 KOG1129 TPR repeat-containing 71.1 3.6 7.7E-05 47.5 3.3 63 1019-1085 396-458 (478)
487 KOG3630 Nuclear pore complex, 70.9 39 0.00084 45.2 12.6 146 124-284 104-261 (1405)
488 PRK07764 DNA polymerase III su 70.8 2.2E+02 0.0048 38.3 20.1 73 1068-1141 259-343 (824)
489 PF13424 TPR_12: Tetratricopep 70.3 11 0.00024 34.1 6.0 67 1018-1111 5-72 (78)
490 PF09976 TPR_21: Tetratricopep 70.2 35 0.00076 35.1 10.4 65 1016-1081 46-110 (145)
491 PF10647 Gmad1: Lipoprotein Lp 70.1 2E+02 0.0044 32.8 17.8 98 214-329 25-126 (253)
492 PF14649 Spatacsin_C: Spatacsi 69.9 15 0.00033 42.8 8.3 27 1100-1126 223-249 (296)
493 KOG1900 Nuclear pore complex, 69.7 99 0.0021 42.4 16.2 75 120-200 178-273 (1311)
494 PF00515 TPR_1: Tetratricopept 68.4 9.6 0.00021 28.7 4.3 26 1019-1044 2-27 (34)
495 PF14938 SNAP: Soluble NSF att 67.8 17 0.00037 42.1 8.3 117 917-1110 58-180 (282)
496 PLN03088 SGT1, suppressor of 67.1 28 0.0006 42.0 10.1 88 1019-1110 3-95 (356)
497 KOG4626 O-linked N-acetylgluco 67.0 35 0.00076 42.9 10.6 156 913-1120 230-410 (966)
498 TIGR02552 LcrH_SycD type III s 66.9 20 0.00042 36.0 7.6 26 1019-1044 52-77 (135)
499 PF07569 Hira: TUP1-like enhan 66.8 20 0.00042 40.2 8.1 70 224-297 19-96 (219)
500 PF14870 PSII_BNR: Photosynthe 66.6 2.7E+02 0.0059 32.9 32.5 289 36-396 9-300 (302)
No 1
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.5e-119 Score=1027.52 Aligned_cols=768 Identities=21% Similarity=0.290 Sum_probs=645.7
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCcccccc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~ 83 (1352)
-++|..|+++|+++.|||..+|++++-.+|.|+|||+++...+++|+..
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~------------------------------- 54 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVS------------------------------- 54 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeec-------------------------------
Confidence 3577889999999999999999999999999999999999999888733
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEE-EeeCCcccccccccc
Q 000685 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQEL 162 (1352)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~w-Dl~t~~~~~i~~~~~ 162 (1352)
.-+|++..|-...+ |+++|++|..|++ ++++++ .+..++.
T Consensus 55 ------------------------------------~~PvRa~kfiaRkn-Wiv~GsDD~~IrVfnynt~e--kV~~FeA 95 (794)
T KOG0276|consen 55 ------------------------------------EVPVRAAKFIARKN-WIVTGSDDMQIRVFNYNTGE--KVKTFEA 95 (794)
T ss_pred ------------------------------------ccchhhheeeeccc-eEEEecCCceEEEEecccce--eeEEeec
Confidence 23455566666554 9999999999976 999885 4778999
Q ss_pred CCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCC-CeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEE
Q 000685 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS-WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1352)
Q Consensus 163 h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t-~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrV 241 (1352)
|.++|+|++.| |..++++++|+|.+|++||++. +.+.+++. ||+++|++++ +++.|.+.|+|+|.|++|+|
T Consensus 96 H~DyIR~iavH-----Pt~P~vLtsSDDm~iKlW~we~~wa~~qtfe-GH~HyVMqv~--fnPkD~ntFaS~sLDrTVKV 167 (794)
T KOG0276|consen 96 HSDYIRSIAVH-----PTLPYVLTSSDDMTIKLWDWENEWACEQTFE-GHEHYVMQVA--FNPKDPNTFASASLDRTVKV 167 (794)
T ss_pred cccceeeeeec-----CCCCeEEecCCccEEEEeeccCceeeeeEEc-CcceEEEEEE--ecCCCccceeeeeccccEEE
Confidence 99999999995 5789999999999999999985 57878887 9999999998 37788999999999999999
Q ss_pred EeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEE
Q 000685 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHP 321 (1352)
Q Consensus 242 WDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~sva 321 (1352)
|.+.+.. +.+++++|..+|+|++|.+. +|.++|+||++|.+|+|||+++..|+++ +.||+.+|+++.
T Consensus 168 Wslgs~~------~nfTl~gHekGVN~Vdyy~~-gdkpylIsgaDD~tiKvWDyQtk~CV~T------LeGHt~Nvs~v~ 234 (794)
T KOG0276|consen 168 WSLGSPH------PNFTLEGHEKGVNCVDYYTG-GDKPYLISGADDLTIKVWDYQTKSCVQT------LEGHTNNVSFVF 234 (794)
T ss_pred EEcCCCC------CceeeeccccCcceEEeccC-CCcceEEecCCCceEEEeecchHHHHHH------hhcccccceEEE
Confidence 9998765 45678999999999999984 4678999999999999999999999988 799999999999
Q ss_pred eCCCCCEE-EEecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEe
Q 000685 322 RAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEF 398 (1352)
Q Consensus 322 fspdg~lL-S~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriW 398 (1352)
|+|.-.++ +||+||+ ||+..+-+ ...++..... ++||++.++ +...++.|.++|.|. +=
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~Ty~---------------lE~tLn~gle-RvW~I~~~k-~~~~i~vG~Deg~i~-v~ 296 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSKTYK---------------LEKTLNYGLE-RVWCIAAHK-GDGKIAVGFDEGSVT-VK 296 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCccee---------------hhhhhhcCCc-eEEEEeecC-CCCeEEEeccCCcEE-EE
Confidence 99998855 8999996 89877542 1223333334 999999999 566799999999984 22
Q ss_pred cCCCCCCccccCCCCCCCCceEEEEecCeEEEEEeeeccCCCCCCCCCcccccCCcccCCCchhhhhhhccccccccCCC
Q 000685 399 DPRSLPAVAPLPTPSGSRDHSAVYIVERELKLVNFQLSSAANPSLGNNGSLSETGRLKGDLPDALQIKQIKKHISTPVPH 478 (1352)
Q Consensus 399 d~~~~p~i~~l~~~s~s~~~~~~~~~~~~lkl~~fq~~~~~n~~~g~~~~~s~~G~~~~~~~~~l~v~~~~r~i~t~~~~ 478 (1352)
--++. |..+.+....++|...+++...+...-... . ....++.+. ...|++.+..-+
T Consensus 297 lgree------P~vsMd~~gKIiwa~~~ei~~~~~ks~~~~-------~--------ev~DgErL~--LsvKeLgs~eiy 353 (794)
T KOG0276|consen 297 LGREE------PAVSMDSNGKIIWAVHSEIQAVNLKSVGAQ-------K--------EVTDGERLP--LSVKELGSVEIY 353 (794)
T ss_pred ccCCC------CceeecCCccEEEEcCceeeeeeceeccCc-------c--------cccCCcccc--chhhhccccccc
Confidence 22333 333444566788988888754433211100 0 111222221 122334444433
Q ss_pred CCccEEEEcCCCCEEEEEECCCCcEEEEEeCCceEeeccceeEEEeccCCCeEEEEeccCCCCcccCCCCCCchhHHHHH
Q 000685 479 DSYSILSVSSSGKYLAVVWPDIPYFSVYKVSDWSIVDSGSARLLAWDTCRDRFAILESALTPRLPIIPKGGSSRKAKEAA 558 (1352)
Q Consensus 479 e~~s~l~~SpdGrylavv~~~~g~y~Iy~i~~~~~i~~G~~~~~aWs~~~~~fAvl~~~~~~~i~~~~k~~~~~k~ke~a 558 (1352)
+. .+.+||+|||++|+ ++|+|+||+...||++.+|++.+|+|..+++.||+++++.... .+|+||+.
T Consensus 354 Pq--~L~hsPNGrfV~Vc--gdGEyiIyTala~RnK~fG~~~eFvw~~dsne~avRes~~~vk--------i~knfke~- 420 (794)
T KOG0276|consen 354 PQ--TLAHSPNGRFVVVC--GDGEYIIYTALALRNKAFGSGLEFVWAADSNEFAVRESNGNVK--------IFKNFKEH- 420 (794)
T ss_pred hH--HhccCCCCcEEEEe--cCccEEEEEeeehhhcccccceeEEEcCCCCeEEEEecCCceE--------EEecceec-
Confidence 33 79999999999887 9999999999999999999999999999999999998653211 23455554
Q ss_pred HHHHHHHHHHHHhhcccceeEEEeccCCCcceeEeeeCCCCCCeeeccccceeeeeeeccccccccccccccccccCCCC
Q 000685 559 AAAAAAQAAAASAASSATVQARILLDDGTSNILMRSIGGSSEPVIGLHGGALLGVAYRTSRRISPIAATAISTIQSMPLS 638 (1352)
Q Consensus 559 ~aaa~~~aaa~aaa~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~llgv~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (1352)
+++.. ....++++||.||||+.+
T Consensus 421 ----------------------------------ksi~~-~~~~e~i~gg~Llg~~ss---------------------- 443 (794)
T KOG0276|consen 421 ----------------------------------KSIRP-DMSAEGIFGGPLLGVRSS---------------------- 443 (794)
T ss_pred ----------------------------------ccccc-ccceeeecCCceEEEEeC----------------------
Confidence 33332 233678999999999866
Q ss_pred CCCCCCCCccccccCCCCCCCCCCCCCCCcEEEeecccccccccCCCCCceEEECCCccEEEEEeeeEEEEEeccccccc
Q 000685 639 GFGSSGLSSFTTFDDGFSSQKSPAEAAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFAYQHYIVISSLCPQYRY 718 (1352)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydw~~~~~~~~~~~~~~~~~w~~~~~~~a~~~~~~i~i~~~~~~~~~ 718 (1352)
+++|||||+++++||||++.++.++|+.+|++||+++.+.+||++++...-.
T Consensus 444 ----------------------------~~~~fydW~~~~lVrrI~v~~k~v~w~d~g~lVai~~d~Sfyil~~n~d~v~ 495 (794)
T KOG0276|consen 444 ----------------------------DFLCFYDWESGELVRRIEVTSKHVYWSDNGELVAIAGDDSFYILKFNADAVA 495 (794)
T ss_pred ----------------------------CeEEEEEcccceEEEEEeeccceeEEecCCCEEEEEecCceeEEEecHHHHH
Confidence 4599999999999999999999999999999999999999999999643211
Q ss_pred cccccccccccceeeeeeeEEecCCcceEEeecCCccchhhhhhHHHHHHHHHhhhhhhhhcccchhhhhhhcchhhhhh
Q 000685 719 LGDVAIPYATGAVWHRRQLFVVTPTTIECVFVDAGVAAIDVETMKMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQD 798 (1352)
Q Consensus 719 ~~~~~~~~~~s~~w~~~~~f~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1352)
-. .++| -..++.||+.+|.. +-+..+.++++.|+||||+||+.
T Consensus 496 ~a------~e~g-------~~v~eeGiedAfev----------------LgE~sE~v~tg~WvgD~fiytts-------- 538 (794)
T KOG0276|consen 496 NA------VEQG-------IEVTEEGIEDAFEV----------------LGEVSESVKTGKWVGDCFIYTTS-------- 538 (794)
T ss_pred HH------HhcC-------CCCcchhHHHHHHH----------------HhhhhhheeeceeeeeEEEEeec--------
Confidence 00 1111 12467788887744 22356789999999999877775
Q ss_pred hcccCCCchhhhhhhcccccCCCCCcccCCCcccccCCCCCCcchhhccccceeeecCCceeeEEeccCCCCCCCCcceE
Q 000685 799 RIKLRPPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLV 878 (1352)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~ 878 (1352)
.||++|++||++.++.|++ ++||
T Consensus 539 --------------------------------------------------~nrlnY~vgGe~~~v~h~~-------~~my 561 (794)
T KOG0276|consen 539 --------------------------------------------------NNRLNYLVGGETYTVAHLD-------RIMY 561 (794)
T ss_pred --------------------------------------------------ccceeEEcCCceEEEEEec-------cchh
Confidence 3567799999999999999 9999
Q ss_pred EEEE--eCCEEEEEeCCCcEEEEEcChhhhhhhHHHhcCCHHHHHHHHhhcChhhHHHHHHHHHhCCcchhhcccccccC
Q 000685 879 VVGV--KDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGMGYATEALHLPGISK 956 (1352)
Q Consensus 879 ~~g~--~~~~~~~~d~~~~~~~~~l~~~~~~f~~~~~~~d~~~a~~~~~~i~~~~~~~~a~fl~~~G~~e~Al~~~~ds~ 956 (1352)
+||| +++++||.||+.|+++|.|++..||||+++++||++.|.+.|++|+.++|.++|+|||++||+|+||++++| +
T Consensus 562 lLgy~~~~~rvYL~Dke~nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~k~~rt~va~Fle~~g~~e~AL~~s~D-~ 640 (794)
T KOG0276|consen 562 LLGYVANDNRVYLHDKELNVISYKILLEVLEYQTLVLRRDLEVADGVLPTIPKEIRTKVAHFLESQGMKEQALELSTD-P 640 (794)
T ss_pred heeeeecCCEEEEeecccceEeEeeehHHHHHHHHhhhccccccccccccCchhhhhhHHhHhhhccchHhhhhcCCC-h
Confidence 9999 999999999999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred ccEEEeecccccHHHHHHHHhhcccccccCCCCCCCCccccccccccchhhhhhhhhhhhhHHHHHHHHHHHHHcCCHHH
Q 000685 957 RLEFDLAMQSNDLKRALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANI 1036 (1352)
Q Consensus 957 ~~kf~la~~~g~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~ 1036 (1352)
++|||||+|+|+|++|.++| .+.+.+ .||++||++|++.|++.+
T Consensus 641 d~rFelal~lgrl~iA~~la------~e~~s~------------------------------~Kw~~Lg~~al~~~~l~l 684 (794)
T KOG0276|consen 641 DQRFELALKLGRLDIAFDLA------VEANSE------------------------------VKWRQLGDAALSAGELPL 684 (794)
T ss_pred hhhhhhhhhcCcHHHHHHHH------Hhhcch------------------------------HHHHHHHHHHhhcccchh
Confidence 99999999999999999999 666666 899999999999999999
Q ss_pred HHHHHHHHHhcCCcccccccccchhhHHHHhccCChhHHHHHHHHHHHcCCcHHHHHHHH-HcCCHHHHHHHHHHcCCcH
Q 000685 1037 AREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFSAA-ILGDNALMEKAWQDTGMLA 1115 (1352)
Q Consensus 1037 A~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~~af~~~-~lgd~~~~~~~l~~~~~~~ 1115 (1352)
|+|||.++ . |+.+|+|||...|+.++|.+|++.|+++|++ |.||.|+ ++||+++|.++|++|+|+|
T Consensus 685 A~EC~~~a---~---------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N~AF~~~~l~g~~~~C~~lLi~t~r~p 751 (794)
T KOG0276|consen 685 ASECFLRA---R---------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKN-NLAFLAYFLSGDYEECLELLISTQRLP 751 (794)
T ss_pred HHHHHHhh---c---------chhhhhhhhhhcCChhHHHHHHHHHHhhccc-chHHHHHHHcCCHHHHHHHHHhcCcCc
Confidence 99999999 4 7889999999999999999999999999999 9999999 9999999999999999999
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHhhhcC
Q 000685 1116 EAVLHAHAHGRPSLKNLVEAWNKMLQKEVD 1145 (1352)
Q Consensus 1116 ~A~~~A~t~~~~~~~~~~~~w~~~l~~~~~ 1145 (1352)
||+||||||+|++++++|++||++|.+..+
T Consensus 752 eAal~ArtYlps~vs~iv~~wk~~l~k~~~ 781 (794)
T KOG0276|consen 752 EAALFARTYLPSQVSRIVELWKEDLSKVSE 781 (794)
T ss_pred HHHHHHhhhChHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999999996533
No 2
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-103 Score=926.76 Aligned_cols=767 Identities=20% Similarity=0.290 Sum_probs=647.6
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCcccccc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~ 83 (1352)
+..|+..+.+|+.++|||..+|++++-++|+|++||++.+.++.+|..|
T Consensus 2 ltkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeH------------------------------- 50 (1202)
T KOG0292|consen 2 LTKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEH------------------------------- 50 (1202)
T ss_pred cchhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhcc-------------------------------
Confidence 4678999999999999999999999999999999999999998888733
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCcccccccccc
Q 000685 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1352)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~ 162 (1352)
+++|+.++|+|+++ ++++|++|..| +|++.+.+ ++.++.+
T Consensus 51 ------------------------------------dGpVRgv~FH~~qp-lFVSGGDDykIkVWnYk~rr--clftL~G 91 (1202)
T KOG0292|consen 51 ------------------------------------DGPVRGVDFHPTQP-LFVSGGDDYKIKVWNYKTRR--CLFTLLG 91 (1202)
T ss_pred ------------------------------------CCccceeeecCCCC-eEEecCCccEEEEEecccce--ehhhhcc
Confidence 55677888899998 99999999999 77998875 4778899
Q ss_pred CCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEE
Q 000685 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1352)
Q Consensus 163 h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVW 242 (1352)
|.++|+.+.| ++.-++|+++|+|.+||||++.+++++..+. ||+++|+|.+ |+|...+++|+|.|.+||||
T Consensus 92 HlDYVRt~~F-----HheyPWIlSASDDQTIrIWNwqsr~~iavlt-GHnHYVMcAq---FhptEDlIVSaSLDQTVRVW 162 (1202)
T KOG0292|consen 92 HLDYVRTVFF-----HHEYPWILSASDDQTIRIWNWQSRKCIAVLT-GHNHYVMCAQ---FHPTEDLIVSASLDQTVRVW 162 (1202)
T ss_pred ccceeEEeec-----cCCCceEEEccCCCeEEEEeccCCceEEEEe-cCceEEEeec---cCCccceEEEecccceEEEE
Confidence 9999999999 5678999999999999999999999999998 9999999998 89999999999999999999
Q ss_pred eCCCCC---------------------ccc--eecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCe
Q 000685 243 SADHGQ---------------------DSR--ELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK 299 (1352)
Q Consensus 243 Dl~tg~---------------------~~~--~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~ 299 (1352)
|+..-+ ... ....++.+.||+.+|++++||| .-.+|+||++|+.|++|.+...+
T Consensus 163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp---TlpliVSG~DDRqVKlWrmnetK 239 (1202)
T KOG0292|consen 163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP---TLPLIVSGADDRQVKLWRMNETK 239 (1202)
T ss_pred eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC---CcceEEecCCcceeeEEEecccc
Confidence 985310 011 2334667899999999999999 68899999999999999999877
Q ss_pred EEEEecCCCcccccCCceeEEEeCCCCC-EEEEecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEE
Q 000685 300 ELRRIKPVPKLACHSVASWCHPRAPNLD-ILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMV 376 (1352)
Q Consensus 300 ~l~~~~~~~~l~~hs~~V~svafspdg~-lLS~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la 376 (1352)
.+.. ..+++|.++|+++.|+|... +|+.|+|+. |||+..+ ..+++++...+ +.|+++
T Consensus 240 aWEv----DtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR---------------t~v~tfrrend-RFW~la 299 (1202)
T KOG0292|consen 240 AWEV----DTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR---------------TSVQTFRREND-RFWILA 299 (1202)
T ss_pred ceee----hhhhcccCCcceEEecCccceeEecCCCccEEEEecccc---------------cceeeeeccCC-eEEEEE
Confidence 6654 56899999999999999877 558999995 8999876 34778887777 999999
Q ss_pred EecCCCcEEEEEECCCeEEEEecCCCCCCccccCCCCCCCCceEEEEecCeEEEEEeeeccCCCCCCCCCcccccCCccc
Q 000685 377 AHSLQPHLVATGTNVGVIISEFDPRSLPAVAPLPTPSGSRDHSAVYIVERELKLVNFQLSSAANPSLGNNGSLSETGRLK 456 (1352)
Q Consensus 377 ~sp~~~~lLatGs~DG~IlriWd~~~~p~i~~l~~~s~s~~~~~~~~~~~~lkl~~fq~~~~~n~~~g~~~~~s~~G~~~ 456 (1352)
.|| ..+++++|++.|+++...+ |++|..+.. ++.++|++++.++..+|+...+.. +.
T Consensus 300 ahP-~lNLfAAgHDsGm~VFkle-RErpa~~v~-------~n~LfYvkd~~i~~~d~~t~~d~~-------v~------- 356 (1202)
T KOG0292|consen 300 AHP-ELNLFAAGHDSGMIVFKLE-RERPAYAVN-------GNGLFYVKDRFIRSYDLRTQKDTA-------VA------- 356 (1202)
T ss_pred ecC-CcceeeeecCCceEEEEEc-ccCceEEEc-------CCEEEEEccceEEeeeccccccce-------eE-------
Confidence 999 7999999999999854443 456665543 577899998888877776422211 00
Q ss_pred CCCchhhhhhhccccccccCCCCCccEEEEcCCCCEEEEEEC-CCCcEEEEEeCCc-------eEeeccceeEEEeccCC
Q 000685 457 GDLPDALQIKQIKKHISTPVPHDSYSILSVSSSGKYLAVVWP-DIPYFSVYKVSDW-------SIVDSGSARLLAWDTCR 528 (1352)
Q Consensus 457 ~~~~~~l~v~~~~r~i~t~~~~e~~s~l~~SpdGrylavv~~-~~g~y~Iy~i~~~-------~~i~~G~~~~~aWs~~~ 528 (1352)
..|..++ .|.++-+++++|...-+.+++. +++.|.+|.+..- +...++.+....| ..+
T Consensus 357 -----------~lr~~g~--~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~f-var 422 (1202)
T KOG0292|consen 357 -----------SLRRPGT--LWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALF-VAR 422 (1202)
T ss_pred -----------eccCCCc--ccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEE-EEe
Confidence 1122222 2233237899999887767754 8999999998532 2234777888999 579
Q ss_pred CeEEEEeccCCCCcccCCCCCCchhHHHHHHHHHHHHHHHHHhhcccceeEEEeccCCCcceeEeeeCCCCCCeeecccc
Q 000685 529 DRFAILESALTPRLPIIPKGGSSRKAKEAAAAAAAAQAAAASAASSATVQARILLDDGTSNILMRSIGGSSEPVIGLHGG 608 (1352)
Q Consensus 529 ~~fAvl~~~~~~~i~~~~k~~~~~k~ke~a~aaa~~~aaa~aaa~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg 608 (1352)
++|||++++.. ++.+|.+.+ .+.+.+..+......+++|
T Consensus 423 Nrfavl~k~~~------------------------------------~v~ik~l~N-----~vtkkl~~~~~~~~IF~ag 461 (1202)
T KOG0292|consen 423 NRFAVLDKSNE------------------------------------QVVIKNLKN-----KVTKKLLLPESTDDIFYAG 461 (1202)
T ss_pred cceEEEEecCc------------------------------------ceEEecccc-----hhhhcccCcccccceeecc
Confidence 99999987533 233333331 2223332221112233444
Q ss_pred ceeeeeeeccccccccccccccccccCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCcEEEeecccccccccC-CCCC
Q 000685 609 ALLGVAYRTSRRISPIAATAISTIQSMPLSGFGSSGLSSFTTFDDGFSSQKSPAEAAPQNFQLYSWETFQPVGGL-LPQP 687 (1352)
Q Consensus 609 ~llgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydw~~~~~~~~~-~~~~ 687 (1352)
. |..... .++.+.+||.++.+.++.+ ..++
T Consensus 462 ~--g~lll~-----------------------------------------------~~~~v~lfdvQq~~~~~si~~s~v 492 (1202)
T KOG0292|consen 462 T--GNLLLR-----------------------------------------------SPDSVTLFDVQQKKKVGSIKVSKV 492 (1202)
T ss_pred C--ccEEEE-----------------------------------------------cCCeEEEEEeecceEEEEEecCce
Confidence 3 111110 2467999999999999995 4789
Q ss_pred ceEEECCCccEEEEEeeeEEEEEeccccccccccccccccccceeeeeeeEE-ecCCcceEEeecCCccchhhhhhHHHH
Q 000685 688 EWTAWDQTVEYCAFAYQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLFV-VTPTTIECVFVDAGVAAIDVETMKMKE 766 (1352)
Q Consensus 688 ~~~~w~~~~~~~a~~~~~~i~i~~~~~~~~~~~~~~~~~~~s~~w~~~~~f~-~t~~~i~~~~~~~~~~~~~~~~~~~~~ 766 (1352)
++|.||.+++++||.+||+|+|+++++++.+..+|.|+ ++||+|+++++|+ ||.+||||++.+
T Consensus 493 kyvvws~dm~~vAll~Kh~i~i~~kkL~l~~sihEtir-iksgawde~gVfiYtT~nHikYal~~--------------- 556 (1202)
T KOG0292|consen 493 KYVVWSNDMSRVALLSKHTITIADKKLELLCSIHETIR-IKSGAWDEDGVFIYTTLNHIKYALEN--------------- 556 (1202)
T ss_pred eEEEEcCccchhhhcccceEEEEecchhheecchheeE-eeeceeccCceEEEEehhhhhhhhcc---------------
Confidence 99999999999999999999999999999998899999 9999999998887 999999999866
Q ss_pred HHHHHhhhhhhhhcccchhhhhhhcchhhhhhhcccCCCchhhhhhhcccccCCCCCcccCCCcccccCCCCCCcchhhc
Q 000685 767 EMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEE 846 (1352)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (1352)
T Consensus 557 -------------------------------------------------------------------------------- 556 (1202)
T KOG0292|consen 557 -------------------------------------------------------------------------------- 556 (1202)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceeeecCCceeeEEeccCCCCCCCCcceEEEEEeCCEEEEEeCCCcEEEEEcChhhhhhhHHHhcCCHHHHHHHHhh
Q 000685 847 RKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASR 926 (1352)
Q Consensus 847 ~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~l~~~~~~f~~~~~~~d~~~a~~~~~~ 926 (1352)
|++++|++|| .|||++.+++|++||+||++.+.++.||.++++|+.|+++++|++++.++++
T Consensus 557 -----------GD~GIikTLd-------~~iyitkv~gn~V~cl~rd~~~~~~~IDptEy~FKlALi~k~ydeVl~lI~n 618 (1202)
T KOG0292|consen 557 -----------GDSGIIKTLD-------KPIYITKVKGNKVFCLNRDGEIECLTIDPTEYRFKLALLNKKYDEVLHLIKN 618 (1202)
T ss_pred -----------CCcceEEecc-------cceEEEEeeCCEEEEEecCCCeEEEeechHHHHHHHHHHhhhhHHHHHHHHh
Confidence 3447899999 9999999999999999999999999999999999999999999999999988
Q ss_pred ---cChhhHHHHHHHHHhCCcchhhcccccccCccEEEeecccccHHHHHHHHhhcccccccCCCCCCCCcccccccccc
Q 000685 927 ---LGREHHDDLAQFMLGMGYATEALHLPGISKRLEFDLAMQSNDLKRALQCLITMSNSRDIGQDHPGLDLNDILTLTTK 1003 (1352)
Q Consensus 927 ---i~~~~~~~~a~fl~~~G~~e~Al~~~~ds~~~kf~la~~~g~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1003 (1352)
+|+ .++.||+++||||.||||+.| +++||+|||+||||++|+|.| ++++.+
T Consensus 619 s~LvGq----aiIaYLqKkgypeiAL~FVkD-~~tRF~LaLe~gnle~ale~a------kkldd~--------------- 672 (1202)
T KOG0292|consen 619 SNLVGQ----AIIAYLQKKGYPEIALHFVKD-ERTRFELALECGNLEVALEAA------KKLDDK--------------- 672 (1202)
T ss_pred cCcccH----HHHHHHHhcCCcceeeeeecC-cchheeeehhcCCHHHHHHHH------HhcCcH---------------
Confidence 565 599999999999999999999 899999999999999999999 888887
Q ss_pred chhhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcccccccccchhhHHHHhccCChhHHHHHHHHHH
Q 000685 1004 KENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLI 1083 (1352)
Q Consensus 1004 ~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~a~ 1083 (1352)
.+|.+||+.||.|||++|||+|||++| .|++|+|||.++||.++|+||+++|+
T Consensus 673 ---------------d~w~rLge~Al~qgn~~IaEm~yQ~~k------------nfekLsfLYliTgn~eKL~Km~~iae 725 (1202)
T KOG0292|consen 673 ---------------DVWERLGEEALRQGNHQIAEMCYQRTK------------NFEKLSFLYLITGNLEKLSKMMKIAE 725 (1202)
T ss_pred ---------------HHHHHHHHHHHHhcchHHHHHHHHHhh------------hhhheeEEEEEeCCHHHHHHHHHHHH
Confidence 999999999999999999999999996 45699999999999999999999999
Q ss_pred HcCCcHHHHHHHH-HcCCHHHHHHHHHHcCCcHHHHHHHHHcCCCchHHHHHHHHHHHhhhcCCCCcchhhHHHHHHhcc
Q 000685 1084 SLGLGREAAFSAA-ILGDNALMEKAWQDTGMLAEAVLHAHAHGRPSLKNLVEAWNKMLQKEVDHTPTAKTDAAAAFLASL 1162 (1352)
Q Consensus 1084 ~~~~~~~~af~~~-~lgd~~~~~~~l~~~~~~~~A~~~A~t~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~ 1162 (1352)
.+++. ..-|+.+ ||||+++++++|.+.|++|+||+.|.+|| +++..++..+.+.++..+.|.
T Consensus 726 ~r~D~-~~~~qnalYl~dv~ervkIl~n~g~~~laylta~~~G---~~~~ae~l~ee~~~~~~~lP~------------- 788 (1202)
T KOG0292|consen 726 IRNDA-TGQFQNALYLGDVKERVKILENGGQLPLAYLTAAAHG---LEDQAEKLGEELEKQVPSLPE------------- 788 (1202)
T ss_pred hhhhh-HHHHHHHHHhccHHHHHHHHHhcCcccHHHHHHhhcC---cHHHHHHHHHhhccccCCCCC-------------
Confidence 99999 8888866 99999999999999999999999999999 788888999999998888888
Q ss_pred CCCCccccccCCCCCCccccC
Q 000685 1163 EEPKLTSLAEAGKKPPIEILP 1183 (1352)
Q Consensus 1163 ~~~~~~~~~~~~~~~~~~~~~ 1183 (1352)
.+|++..|++|.|++|.|=-|
T Consensus 789 ~~~~a~ll~pP~p~~~l~nwP 809 (1202)
T KOG0292|consen 789 VDPNASLLQPPVPIMPLENWP 809 (1202)
T ss_pred CCCcccccCCCCccccccCCc
Confidence 689999999999999999555
No 3
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=100.00 E-value=1.5e-69 Score=647.35 Aligned_cols=397 Identities=24% Similarity=0.328 Sum_probs=304.2
Q ss_pred EEEEcCCCCEEEEEECCCCcEEEEEeCCceEeeccceeEEEeccCCCeEEEEeccCCCCcccCCCCCCchhHHHHHHHHH
Q 000685 483 ILSVSSSGKYLAVVWPDIPYFSVYKVSDWSIVDSGSARLLAWDTCRDRFAILESALTPRLPIIPKGGSSRKAKEAAAAAA 562 (1352)
Q Consensus 483 ~l~~SpdGrylavv~~~~g~y~Iy~i~~~~~i~~G~~~~~aWs~~~~~fAvl~~~~~~~i~~~~k~~~~~k~ke~a~aaa 562 (1352)
.+++||+|++++|+ ++|+|.||+...|+.+.+|++.+++|.+ +++||+++++.
T Consensus 37 ~ls~npngr~v~V~--g~geY~iyt~~~~r~k~~G~g~~~vw~~-~n~yAv~~~~~------------------------ 89 (443)
T PF04053_consen 37 SLSHNPNGRFVLVC--GDGEYEIYTALAWRNKAFGSGLSFVWSS-RNRYAVLESSS------------------------ 89 (443)
T ss_dssp EEEE-TTSSEEEEE--ETTEEEEEETTTTEEEEEEE-SEEEE-T-SSEEEEE-TTS------------------------
T ss_pred eEEECCCCCEEEEE--cCCEEEEEEccCCcccccCceeEEEEec-CccEEEEECCC------------------------
Confidence 89999999999885 9999999999999999999999999987 99999998531
Q ss_pred HHHHHHHHhhcccceeEEEeccCCCcceeEeeeCCCCCCeeeccccceeeeeeeccccccccccccccccccCCCCCCCC
Q 000685 563 AAQAAAASAASSATVQARILLDDGTSNILMRSIGGSSEPVIGLHGGALLGVAYRTSRRISPIAATAISTIQSMPLSGFGS 642 (1352)
Q Consensus 563 ~~~aaa~aaa~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~llgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (1352)
+ |+++.+.+ +...+++.. ...++.+|||.||++...
T Consensus 90 -------------~--I~I~kn~~--~~~~k~i~~-~~~~~~If~G~LL~~~~~-------------------------- 125 (443)
T PF04053_consen 90 -------------T--IKIYKNFK--NEVVKSIKL-PFSVEKIFGGNLLGVKSS-------------------------- 125 (443)
T ss_dssp ----------------EEEEETTE--E-TT------SS-EEEEE-SSSEEEEET--------------------------
T ss_pred -------------e--EEEEEcCc--cccceEEcC-CcccceEEcCcEEEEECC--------------------------
Confidence 1 22222111 111123332 235788999999999755
Q ss_pred CCCCccccccCCCCCCCCCCCCCCCcEEEeecccccccccCCCCC-ceEEECCCccEEEEEeeeEEEEEecccccccccc
Q 000685 643 SGLSSFTTFDDGFSSQKSPAEAAPQNFQLYSWETFQPVGGLLPQP-EWTAWDQTVEYCAFAYQHYIVISSLCPQYRYLGD 721 (1352)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydw~~~~~~~~~~~~~-~~~~w~~~~~~~a~~~~~~i~i~~~~~~~~~~~~ 721 (1352)
++++||||++++.|+++...+ +.|+|++++++||++++++|||++++.+.- .+
T Consensus 126 ------------------------~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~--~~ 179 (443)
T PF04053_consen 126 ------------------------DFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKDSIYILKYNLEAV--AA 179 (443)
T ss_dssp ------------------------TEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHH--HH
T ss_pred ------------------------CCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCCeEEEEEecchhc--cc
Confidence 359999999999999999885 999999999999999999999999975410 00
Q ss_pred ccccccccceeeeeeeEEecCCcceEEeecCCccchhhhhhHHHHHHHHHhhhhhhhhcccchhhhhhhcchhhhhhhcc
Q 000685 722 VAIPYATGAVWHRRQLFVVTPTTIECVFVDAGVAAIDVETMKMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIK 801 (1352)
Q Consensus 722 ~~~~~~~s~~w~~~~~f~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1352)
..++|++.+|.. .+| ..+.+++++|+||||+||+.
T Consensus 180 ------------------~~~~g~e~~f~~-------------~~E---~~~~IkSg~W~~d~fiYtT~----------- 214 (443)
T PF04053_consen 180 ------------------IPEEGVEDAFEL-------------IHE---ISERIKSGCWVEDCFIYTTS----------- 214 (443)
T ss_dssp ------------------BTTTB-GGGEEE-------------EEE---E-S--SEEEEETTEEEEE-T-----------
T ss_pred ------------------ccccCchhceEE-------------EEE---ecceeEEEEEEcCEEEEEcC-----------
Confidence 123333433221 112 13457788888888777775
Q ss_pred cCCCchhhhhhhcccccCCCCCcccCCCcccccCCCCCCcchhhccccceeeecCCceeeEEeccCCCCCCCCcceEEEE
Q 000685 802 LRPPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVG 881 (1352)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~g 881 (1352)
++|.|++||++++|+||| +|+||+|
T Consensus 215 ------------------------------------------------~~lkYl~~Ge~~~i~~ld-------~~~yllg 239 (443)
T PF04053_consen 215 ------------------------------------------------NHLKYLVNGETGIIAHLD-------KPLYLLG 239 (443)
T ss_dssp ------------------------------------------------TEEEEEETTEEEEEEE-S-------S--EEEE
T ss_pred ------------------------------------------------CeEEEEEcCCcceEEEcC-------CceEEEE
Confidence 245578889999999999 9999999
Q ss_pred EeC--CEEEEEeCCCcEEEEEcChhhhhhhHHHhcCCHHH------HHHHHhhcChhhHHHHHHHHHhCCcchhhccccc
Q 000685 882 VKD--GVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVS------AVKWASRLGREHHDDLAQFMLGMGYATEALHLPG 953 (1352)
Q Consensus 882 ~~~--~~~~~~d~~~~~~~~~l~~~~~~f~~~~~~~d~~~------a~~~~~~i~~~~~~~~a~fl~~~G~~e~Al~~~~ 953 (1352)
|.. +++|++||++++++|.|++++++||+++++||+++ +.+++++||+++++++|+||+++||+|+||++++
T Consensus 240 y~~~~~~ly~~Dr~~~v~~~~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~ 319 (443)
T PF04053_consen 240 YLPKENRLYLIDRDGNVISYELDLSELEFKTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVT 319 (443)
T ss_dssp EETTTTEEEEE-TT--EEEEE--HHHHHHHHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS
T ss_pred EEccCCEEEEEECCCCEEEEEECHHHHHHHHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcC
Confidence 966 99999999999999999999999999999999999 4677888999999999999999999999999999
Q ss_pred ccCccEEEeecccccHHHHHHHHhhcccccccCCCCCCCCccccccccccchhhhhhhhhhhhhHHHHHHHHHHHHHcCC
Q 000685 954 ISKRLEFDLAMQSNDLKRALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQ 1033 (1352)
Q Consensus 954 ds~~~kf~la~~~g~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~ 1033 (1352)
| +++||||||+||+|+.|+++| ++++++ .+|++||++||++||
T Consensus 320 D-~~~rFeLAl~lg~L~~A~~~a------~~~~~~------------------------------~~W~~Lg~~AL~~g~ 362 (443)
T PF04053_consen 320 D-PDHRFELALQLGNLDIALEIA------KELDDP------------------------------EKWKQLGDEALRQGN 362 (443)
T ss_dssp --HHHHHHHHHHCT-HHHHHHHC------CCCSTH------------------------------HHHHHHHHHHHHTTB
T ss_pred C-hHHHhHHHHhcCCHHHHHHHH------HhcCcH------------------------------HHHHHHHHHHHHcCC
Confidence 9 899999999999999999999 777766 899999999999999
Q ss_pred HHHHHHHHHHHHhcCCcccccccccchhhHHHHhccCChhHHHHHHHHHHHcCCcHHHHHHHH-HcCCHHHHHHHHHHcC
Q 000685 1034 ANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFSAA-ILGDNALMEKAWQDTG 1112 (1352)
Q Consensus 1034 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~~af~~~-~lgd~~~~~~~l~~~~ 1112 (1352)
+++||+||+++ + |+++|+|||+++|+.++|++|+++|..+|++ |+||+|+ ++||+++|+++|+++|
T Consensus 363 ~~lAe~c~~k~---~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~-n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 363 IELAEECYQKA---K---------DFSGLLLLYSSTGDREKLSKLAKIAEERGDI-NIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HHHHHHHHHHC---T----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-H-HHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHhh---c---------CccccHHHHHHhCCHHHHHHHHHHHHHccCH-HHHHHHHHHcCCHHHHHHHHHHcC
Confidence 99999999999 6 8899999999999999999999999999999 9999998 9999999999999999
Q ss_pred CcHHHHHHHHHcCC
Q 000685 1113 MLAEAVLHAHAHGR 1126 (1352)
Q Consensus 1113 ~~~~A~~~A~t~~~ 1126 (1352)
|+|||++|||||||
T Consensus 430 ~~~~A~~~A~ty~~ 443 (443)
T PF04053_consen 430 RLPEAALFARTYGP 443 (443)
T ss_dssp -HHHHHHHHHHTT-
T ss_pred CchHHHHHHHhcCC
Confidence 99999999999996
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-39 Score=358.28 Aligned_cols=327 Identities=21% Similarity=0.308 Sum_probs=281.9
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec--cccceeEecccccCCCccccc
Q 000685 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAM 82 (1352)
Q Consensus 5 ~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~~l 82 (1352)
..+.||.+.|-|+.|+|+|.+|+||+.|.++|+||+.+..++.+.+ +|...+.+++ ||++.|++|+
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~K-gH~~WVlcvawsPDgk~iASG~----------- 176 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCK-GHKNWVLCVAWSPDGKKIASGS----------- 176 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeec-CCccEEEEEEECCCcchhhccc-----------
Confidence 3688999999999999999999999999999999999999999998 7789999988 9999999997
Q ss_pred cCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecC-----CCCeEEEEEecCcEE-EEEeeCCcccc
Q 000685 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPST-----KGRHFLVICCVNKAI-FLDLVTMRGRD 156 (1352)
Q Consensus 83 ~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafsp-----dg~~lLasgs~D~~I-~wDl~t~~~~~ 156 (1352)
.||+|++||..+++++. ..+.+| ...|.+++|.| ..+ .|++++.|+.+ +||...+.+
T Consensus 177 ----------~dg~I~lwdpktg~~~g---~~l~gH-~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~~-- 239 (480)
T KOG0271|consen 177 ----------KDGSIRLWDPKTGQQIG---RALRGH-KKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGTC-- 239 (480)
T ss_pred ----------cCCeEEEecCCCCCccc---ccccCc-ccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCceE--
Confidence 78999999999998873 455555 88999999976 344 89999999988 568887654
Q ss_pred ccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEe--------eeCCCC-
Q 000685 157 IPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTF--------MASSGE- 227 (1352)
Q Consensus 157 i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf--------~~s~dg- 227 (1352)
+....+|...|+|+.| ....+|++||.|++|++|+...|.+.+.+. ||.+.|+.++.- .|.+.+
T Consensus 240 ~~~lsgHT~~VTCvrw------GG~gliySgS~DrtIkvw~a~dG~~~r~lk-GHahwvN~lalsTdy~LRtgaf~~t~~ 312 (480)
T KOG0271|consen 240 VRTLSGHTASVTCVRW------GGEGLIYSGSQDRTIKVWRALDGKLCRELK-GHAHWVNHLALSTDYVLRTGAFDHTGR 312 (480)
T ss_pred EEEeccCccceEEEEE------cCCceEEecCCCceEEEEEccchhHHHhhc-ccchheeeeeccchhhhhccccccccc
Confidence 5568899999999999 224699999999999999999999999987 999999999721 122333
Q ss_pred ------------------------CEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEE
Q 000685 228 ------------------------ALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLIT 283 (1352)
Q Consensus 228 ------------------------~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaS 283 (1352)
..++|||.|.++.+|+....+. +...+.+|..-|+.+.|+| |+++|++
T Consensus 313 ~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk-----pi~rmtgHq~lVn~V~fSP---d~r~IAS 384 (480)
T KOG0271|consen 313 KPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK-----PITRMTGHQALVNHVSFSP---DGRYIAS 384 (480)
T ss_pred cCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc-----chhhhhchhhheeeEEECC---CccEEEE
Confidence 3599999999999999765431 3334789999999999999 8999999
Q ss_pred EECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEE-EEecCCe--EEeccCCcccccccCccccCCCCC
Q 000685 284 IGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVP 360 (1352)
Q Consensus 284 gs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lL-S~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~ 360 (1352)
+|-|+.|++||.++|+.+.+ ++||-..|+.++|+.|.++| +||.|.+ +|++++.+ .
T Consensus 385 aSFDkSVkLW~g~tGk~las------fRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK---------------l 443 (480)
T KOG0271|consen 385 ASFDKSVKLWDGRTGKFLAS------FRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK---------------L 443 (480)
T ss_pred eecccceeeeeCCCcchhhh------hhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee---------------e
Confidence 99999999999999998887 69999999999999999966 7899986 89999753 2
Q ss_pred CeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEec
Q 000685 361 PQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1352)
Q Consensus 361 ~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd 399 (1352)
..-+.+|.+ .|+++.|+| ++..+++|+.|.++ ++|.
T Consensus 444 ~~DLpGh~D-EVf~vDwsp-DG~rV~sggkdkv~-~lw~ 479 (480)
T KOG0271|consen 444 KQDLPGHAD-EVFAVDWSP-DGQRVASGGKDKVL-RLWR 479 (480)
T ss_pred cccCCCCCc-eEEEEEecC-CCceeecCCCceEE-Eeec
Confidence 455678888 899999999 67889999999996 8994
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-34 Score=317.22 Aligned_cols=286 Identities=17% Similarity=0.211 Sum_probs=245.8
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec-------cccceeEecccccCC
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG-------AKLEKLAEGELEHKG 76 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs-------~dg~~Lasgs~d~~g 76 (1352)
+.+.+||.+.|.|++|+|||++||+|+.||.|++||-.+|+++..--.+|...|..++ +..++|++++
T Consensus 150 ~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~s----- 224 (480)
T KOG0271|consen 150 LFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSS----- 224 (480)
T ss_pred ceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceeccc-----
Confidence 5788999999999999999999999999999999999999888776668888888776 5667788776
Q ss_pred CccccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccc
Q 000685 77 KPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGR 155 (1352)
Q Consensus 77 ~~l~~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~ 155 (1352)
.||.++|||+..++++ ....+| +..|+|+.|--+| ++.+|+.|++| +|+...+.+
T Consensus 225 ----------------kDg~vrIWd~~~~~~~----~~lsgH-T~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~- 280 (480)
T KOG0271|consen 225 ----------------KDGSVRIWDTKLGTCV----RTLSGH-TASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKL- 280 (480)
T ss_pred ----------------CCCCEEEEEccCceEE----EEeccC-ccceEEEEEcCCc--eEEecCCCceEEEEEccchhH-
Confidence 7999999999999886 455666 9999999998776 99999999999 567766654
Q ss_pred cccccccCCCCeEEEEEeec------cccCC-------------------------CCEEEEEECCCcEEEEECCC-CeE
Q 000685 156 DIPKQELDNKSLVCMEFLSR------SAVGD-------------------------VPLVAFGSSDGVIRVLSMIS-WKL 203 (1352)
Q Consensus 156 ~i~~~~~h~~~V~~vaf~P~------s~Spd-------------------------g~~LasGs~DGtIrIWDl~t-~~~ 203 (1352)
...+.+|..+|+.++.+.. .|.|. +..+++|++|.++.+|+... .++
T Consensus 281 -~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkp 359 (480)
T KOG0271|consen 281 -CRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKP 359 (480)
T ss_pred -HHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccc
Confidence 5568899999999987521 11222 34599999999999999864 457
Q ss_pred EEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEE
Q 000685 204 VRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLIT 283 (1352)
Q Consensus 204 i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaS 283 (1352)
+.++. +|..-|+.+. |+||+++++|+|.|..|++||.++|+.+.. |+||-..|+.++|+. |.++|++
T Consensus 360 i~rmt-gHq~lVn~V~---fSPd~r~IASaSFDkSVkLW~g~tGk~las------fRGHv~~VYqvawsa---DsRLlVS 426 (480)
T KOG0271|consen 360 ITRMT-GHQALVNHVS---FSPDGRYIASASFDKSVKLWDGRTGKFLAS------FRGHVAAVYQVAWSA---DSRLLVS 426 (480)
T ss_pred hhhhh-chhhheeeEE---ECCCccEEEEeecccceeeeeCCCcchhhh------hhhccceeEEEEecc---CccEEEE
Confidence 77776 9999999997 899999999999999999999999997765 799999999999998 8999999
Q ss_pred EECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEE-EEecCCe--EE
Q 000685 284 IGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IW 338 (1352)
Q Consensus 284 gs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lL-S~s~Dg~--IW 338 (1352)
||.|.++++||+++.+.... +.||...|+++.|+|||..+ +|+.|.- +|
T Consensus 427 ~SkDsTLKvw~V~tkKl~~D------LpGh~DEVf~vDwspDG~rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 427 GSKDSTLKVWDVRTKKLKQD------LPGHADEVFAVDWSPDGQRVASGGKDKVLRLW 478 (480)
T ss_pred cCCCceEEEEEeeeeeeccc------CCCCCceEEEEEecCCCceeecCCCceEEEee
Confidence 99999999999998877665 79999999999999999977 5667763 66
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.6e-33 Score=299.96 Aligned_cols=287 Identities=20% Similarity=0.247 Sum_probs=245.5
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCcccccc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~ 83 (1352)
-++|+||.+.|.++.|++|+++|++++.||.+.|||.-|...++-+...
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~------------------------------- 96 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP------------------------------- 96 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecC-------------------------------
Confidence 4789999999999999999999999999999999998775554444311
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCc----ccccc
Q 000685 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMR----GRDIP 158 (1352)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~----~~~i~ 158 (1352)
..+|..++|+|.|+ ++++|+-|+.. ++++.+.+ .+...
T Consensus 97 ------------------------------------s~WVMtCA~sPSg~-~VAcGGLdN~Csiy~ls~~d~~g~~~v~r 139 (343)
T KOG0286|consen 97 ------------------------------------SSWVMTCAYSPSGN-FVACGGLDNKCSIYPLSTRDAEGNVRVSR 139 (343)
T ss_pred ------------------------------------ceeEEEEEECCCCC-eEEecCcCceeEEEecccccccccceeee
Confidence 45688889999997 99999988888 44776442 12334
Q ss_pred ccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCC-CCCEEEEEeCCC
Q 000685 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASS-GEALLVSGGSDG 237 (1352)
Q Consensus 159 ~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~-dg~~LaSgS~DG 237 (1352)
.+.+|.+++.|+.|. +...|+++|.|.++.+||+++++.+..|. ||.+.|+++. ++| +++.|+||+-|+
T Consensus 140 ~l~gHtgylScC~f~------dD~~ilT~SGD~TCalWDie~g~~~~~f~-GH~gDV~sls---l~p~~~ntFvSg~cD~ 209 (343)
T KOG0286|consen 140 ELAGHTGYLSCCRFL------DDNHILTGSGDMTCALWDIETGQQTQVFH-GHTGDVMSLS---LSPSDGNTFVSGGCDK 209 (343)
T ss_pred eecCccceeEEEEEc------CCCceEecCCCceEEEEEcccceEEEEec-CCcccEEEEe---cCCCCCCeEEeccccc
Confidence 468899999999994 46789999999999999999999999997 9999999998 677 999999999999
Q ss_pred cEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCce
Q 000685 238 LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVAS 317 (1352)
Q Consensus 238 tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V 317 (1352)
+.++||++.+.+.++ +.+|+..|++|.|+| +|.-+++|++|++.|+||++..+.+..+.. ..-..+|
T Consensus 210 ~aklWD~R~~~c~qt------F~ghesDINsv~ffP---~G~afatGSDD~tcRlyDlRaD~~~a~ys~----~~~~~gi 276 (343)
T KOG0286|consen 210 SAKLWDVRSGQCVQT------FEGHESDINSVRFFP---SGDAFATGSDDATCRLYDLRADQELAVYSH----DSIICGI 276 (343)
T ss_pred ceeeeeccCcceeEe------ecccccccceEEEcc---CCCeeeecCCCceeEEEeecCCcEEeeecc----CcccCCc
Confidence 999999999988776 799999999999999 899999999999999999999998888642 2334578
Q ss_pred eEEEeCCCCCEE-EEecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeE
Q 000685 318 WCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVI 394 (1352)
Q Consensus 318 ~svafspdg~lL-S~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~I 394 (1352)
++++||-.|++| +|..|.+ +||.-.+. ....+.+|.+ +|+|+..+| ++.-+++|+.|..+
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~e---------------~vg~L~GHeN-RvScl~~s~-DG~av~TgSWDs~l 339 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKGE---------------RVGVLAGHEN-RVSCLGVSP-DGMAVATGSWDSTL 339 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeeccccc---------------eEEEeeccCC-eeEEEEECC-CCcEEEecchhHhe
Confidence 999999999987 5666664 89987652 3567889988 999999999 78889999999997
Q ss_pred EEEec
Q 000685 395 ISEFD 399 (1352)
Q Consensus 395 lriWd 399 (1352)
|+|.
T Consensus 340 -riW~ 343 (343)
T KOG0286|consen 340 -RIWA 343 (343)
T ss_pred -eecC
Confidence 8994
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.8e-33 Score=312.04 Aligned_cols=278 Identities=22% Similarity=0.280 Sum_probs=246.0
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec--cc--cceeEecccccCCCccccccC
Q 000685 9 PTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AK--LEKLAEGELEHKGKPTEAMRG 84 (1352)
Q Consensus 9 gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs--~d--g~~Lasgs~d~~g~~l~~l~~ 84 (1352)
|-+.+|..+.||.++..|+||+.+|.++||+..++..+.+|. +|...+-.+. |. +..+++++
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~-gH~~~v~~~~fhP~~~~~~lat~s------------- 238 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLR-GHTSRVGAAVFHPVDSDLNLATAS------------- 238 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEe-ccccceeeEEEccCCCccceeeec-------------
Confidence 556789999999999999999999999999999999999998 5566655554 33 56777776
Q ss_pred CceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccccccC
Q 000685 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELD 163 (1352)
Q Consensus 85 g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~h 163 (1352)
.||++++|++.+...+ ..+.+| ...|..++|+|+|+ +|+++|.|.+. .||+.++.. +...++|
T Consensus 239 --------~Dgtvklw~~~~e~~l----~~l~gH-~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk~E--lL~QEGH 302 (459)
T KOG0272|consen 239 --------ADGTVKLWKLSQETPL----QDLEGH-LARVSRVAFHPSGK-FLGTASFDSTWRLWDLETKSE--LLLQEGH 302 (459)
T ss_pred --------cCCceeeeccCCCcch----hhhhcc-hhhheeeeecCCCc-eeeecccccchhhcccccchh--hHhhccc
Confidence 7999999999987655 445555 78999999999998 99999999999 569998753 5567999
Q ss_pred CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEe
Q 000685 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243 (1352)
Q Consensus 164 ~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWD 243 (1352)
...|.+++| .+||.++++|+.|..-||||+++++++..+. ||...|.++. |+|+|..|+|||.|++++|||
T Consensus 303 s~~v~~iaf-----~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~-gH~k~I~~V~---fsPNGy~lATgs~Dnt~kVWD 373 (459)
T KOG0272|consen 303 SKGVFSIAF-----QPDGSLAATGGLDSLGRVWDLRTGRCIMFLA-GHIKEILSVA---FSPNGYHLATGSSDNTCKVWD 373 (459)
T ss_pred ccccceeEe-----cCCCceeeccCccchhheeecccCcEEEEec-ccccceeeEe---ECCCceEEeecCCCCcEEEee
Confidence 999999999 6799999999999999999999999999887 8999999998 799999999999999999999
Q ss_pred CCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeC
Q 000685 244 ADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRA 323 (1352)
Q Consensus 244 l~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafs 323 (1352)
++..+.+. ++.+|.+-|..|.|+| ..|.+|+|+|.|++++||...++.++++ +.||.+.|.++.++
T Consensus 374 LR~r~~ly------~ipAH~nlVS~Vk~~p--~~g~fL~TasyD~t~kiWs~~~~~~~ks------LaGHe~kV~s~Dis 439 (459)
T KOG0272|consen 374 LRMRSELY------TIPAHSNLVSQVKYSP--QEGYFLVTASYDNTVKIWSTRTWSPLKS------LAGHEGKVISLDIS 439 (459)
T ss_pred ecccccce------ecccccchhhheEecc--cCCeEEEEcccCcceeeecCCCcccchh------hcCCccceEEEEec
Confidence 99877644 4799999999999999 4789999999999999999999999887 79999999999999
Q ss_pred CCCCEE-EEecCCe--EEe
Q 000685 324 PNLDIL-TCVKDSH--IWA 339 (1352)
Q Consensus 324 pdg~lL-S~s~Dg~--IWD 339 (1352)
+++..+ ++|.|.+ +|.
T Consensus 440 ~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 440 PDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cCCceEEEeccCceeeecc
Confidence 999955 7889985 784
No 8
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.1e-29 Score=286.48 Aligned_cols=435 Identities=14% Similarity=0.143 Sum_probs=297.5
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE--EEeccCccceEEec--cccceeEecccccCCCcc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIY--ELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPT 79 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~--t~~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l 79 (1352)
...|..|...|+-..|||.|-|+|+|+..|+|||||....+.+. +|+.- .+.|.-++ .++++|+..++..
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~-aG~I~Di~Wd~ds~RI~avGEGr----- 125 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVL-AGPIKDISWDFDSKRIAAVGEGR----- 125 (603)
T ss_pred eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeec-ccccccceeCCCCcEEEEEecCc-----
Confidence 56788999999999999999999999999999999976533332 33311 11222222 4555554443221
Q ss_pred ccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEE-EeeCCcccccc
Q 000685 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIP 158 (1352)
Q Consensus 80 ~~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~w-Dl~t~~~~~i~ 158 (1352)
. .=|.+.+||..+. . ....+| ...|+++.|-|..+..+++|++|+.+-+ .-...+. ..
T Consensus 126 ------e------rfg~~F~~DSG~S--v----Gei~Gh-Sr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKF--k~ 184 (603)
T KOG0318|consen 126 ------E------RFGHVFLWDSGNS--V----GEITGH-SRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKF--KS 184 (603)
T ss_pred ------c------ceeEEEEecCCCc--c----ceeecc-ceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeee--ee
Confidence 0 1244556665543 2 344555 8899999999999999999999999955 4443333 33
Q ss_pred ccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEe--cCCCCCeeEEEEeeeCCCCCEEEEEeCC
Q 000685 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYT--GGHKGSISCLMTFMASSGEALLVSGGSD 236 (1352)
Q Consensus 159 ~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~--~gH~~~V~slawf~~s~dg~~LaSgS~D 236 (1352)
....|...|+|+.| +|||.++++.+.||+|.+||-.+++.+..+. .+|.+.|.++.| +||+..|+|+|.|
T Consensus 185 s~r~HskFV~~VRy-----sPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsW---sPDs~~~~T~SaD 256 (603)
T KOG0318|consen 185 SFREHSKFVNCVRY-----SPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSW---SPDSTQFLTVSAD 256 (603)
T ss_pred cccccccceeeEEE-----CCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEE---CCCCceEEEecCC
Confidence 46778999999999 8899999999999999999999999998884 479999999994 8999999999999
Q ss_pred CcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCc
Q 000685 237 GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVA 316 (1352)
Q Consensus 237 GtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~ 316 (1352)
.++||||+.+.++++++....+ -.+.-..+-|. +..|++.+.+|+|.+++...+..++. +.||..+
T Consensus 257 kt~KIWdVs~~slv~t~~~~~~---v~dqqvG~lWq-----kd~lItVSl~G~in~ln~~d~~~~~~------i~GHnK~ 322 (603)
T KOG0318|consen 257 KTIKIWDVSTNSLVSTWPMGST---VEDQQVGCLWQ-----KDHLITVSLSGTINYLNPSDPSVLKV------ISGHNKS 322 (603)
T ss_pred ceEEEEEeeccceEEEeecCCc---hhceEEEEEEe-----CCeEEEEEcCcEEEEecccCCChhhe------ecccccc
Confidence 9999999999998877633222 12333344553 46999999999999999998886666 6899999
Q ss_pred eeEEEeCCCCCE-EEEecCCeE--EeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCe
Q 000685 317 SWCHPRAPNLDI-LTCVKDSHI--WAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGV 393 (1352)
Q Consensus 317 V~svafspdg~l-LS~s~Dg~I--WDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~ 393 (1352)
|+++..+++++. ++|+.||+| |++.++... ...-..|.. .|.+++.+. .+. +++.+.|..
T Consensus 323 ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~--------------~~~g~~h~n-qI~~~~~~~-~~~-~~t~g~Dd~ 385 (603)
T KOG0318|consen 323 ITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD--------------RLAGKGHTN-QIKGMAASE-SGE-LFTIGWDDT 385 (603)
T ss_pred eeEEEEcCCCCEEEeeccCceEEEEecCCcccc--------------ccccccccc-eEEEEeecC-CCc-EEEEecCCe
Confidence 999999999995 599999985 998876310 011134655 899999886 355 666677777
Q ss_pred EEEEecCCCCCCccc--cCCCCCCCCceEEEEecCeEEEEEeeeccCCCCCCCCCcccccCCcccCCCchhhhhhh-ccc
Q 000685 394 IISEFDPRSLPAVAP--LPTPSGSRDHSAVYIVERELKLVNFQLSSAANPSLGNNGSLSETGRLKGDLPDALQIKQ-IKK 470 (1352)
Q Consensus 394 IlriWd~~~~p~i~~--l~~~s~s~~~~~~~~~~~~lkl~~fq~~~~~n~~~g~~~~~s~~G~~~~~~~~~l~v~~-~~r 470 (1352)
+ |+.+.....--.. +....+ + ..+....++.+-+..+. ..+.+++ ..+
T Consensus 386 l-~~~~~~~~~~t~~~~~~lg~Q-P-~~lav~~d~~~avv~~~--------------------------~~iv~l~~~~~ 436 (603)
T KOG0318|consen 386 L-RVISLKDNGYTKSEVVKLGSQ-P-KGLAVLSDGGTAVVACI--------------------------SDIVLLQDQTK 436 (603)
T ss_pred E-EEEecccCcccccceeecCCC-c-eeEEEcCCCCEEEEEec--------------------------CcEEEEecCCc
Confidence 5 6775532111100 000000 0 01111111111111110 1111111 111
Q ss_pred cccccCCCCCccEEEEcCCCCEEEEEECCCCcEEEEEeCCceEe-------eccceeEEEeccCCCeEEEEe
Q 000685 471 HISTPVPHDSYSILSVSSSGKYLAVVWPDIPYFSVYKVSDWSIV-------DSGSARLLAWDTCRDRFAILE 535 (1352)
Q Consensus 471 ~i~t~~~~e~~s~l~~SpdGrylavv~~~~g~y~Iy~i~~~~~i-------~~G~~~~~aWs~~~~~fAvl~ 535 (1352)
....+..... +.++++|+|.++ ++...++.+.||+++...+. .+|..+.++++|+...||+-+
T Consensus 437 ~~~~~~~y~~-s~vAv~~~~~~v-aVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~D 506 (603)
T KOG0318|consen 437 VSSIPIGYES-SAVAVSPDGSEV-AVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGD 506 (603)
T ss_pred ceeecccccc-ceEEEcCCCCEE-EEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEec
Confidence 1122233333 589999999999 55677788999999764322 277788888888877777765
No 9
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.1e-30 Score=301.58 Aligned_cols=434 Identities=17% Similarity=0.244 Sum_probs=309.3
Q ss_pred eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-ccCccceEEe--ccccceeEecccccCCCcc
Q 000685 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELK-AGGVDQRRLV--GAKLEKLAEGELEHKGKPT 79 (1352)
Q Consensus 3 ~l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~-~~~~~~i~~v--s~dg~~Lasgs~d~~g~~l 79 (1352)
+.+++.||.+.|+++.|+.|.++|++|+.|.+++||+++..+-+.... .+|.+.|... ..+...+.+.+
T Consensus 137 l~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvs-------- 208 (893)
T KOG0291|consen 137 LHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVS-------- 208 (893)
T ss_pred EeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEe--------
Confidence 468999999999999999999999999999999999988655533332 2555544322 24444444433
Q ss_pred ccccCCceEEEEEcCCeEEEEEcCCcccc------------------------cc-cc----ccccccCCCCeeeeeecC
Q 000685 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRAA------------------------AA-EA----PTAVSNVTSGFASPPPST 130 (1352)
Q Consensus 80 ~~l~~g~V~sVaF~Dg~IrlWDl~t~~~i------------------------~~-~~----~~~~~~~~~~V~slafsp 130 (1352)
.||.+.+|........ +. .+ ..........|++.+|++
T Consensus 209 -------------kdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~ 275 (893)
T KOG0291|consen 209 -------------KDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHK 275 (893)
T ss_pred -------------cCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccC
Confidence 5888888877621000 00 00 011111136799999999
Q ss_pred CCCeEEEEEecCcEEEE-EeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECC-CcEEEEECCCCeEEEEEe
Q 000685 131 KGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSD-GVIRVLSMISWKLVRRYT 208 (1352)
Q Consensus 131 dg~~lLasgs~D~~I~w-Dl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~D-GtIrIWDl~t~~~i~~l~ 208 (1352)
... +|++|-.+|...+ .+....+ +.........|..+.| +..|.+|+.|+.. |.+.||++++...+.+..
T Consensus 276 ~t~-~lvvgFssG~f~LyelP~f~l--ih~LSis~~~I~t~~~-----N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQ 347 (893)
T KOG0291|consen 276 GTN-LLVVGFSSGEFGLYELPDFNL--IHSLSISDQKILTVSF-----NSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQ 347 (893)
T ss_pred Cce-EEEEEecCCeeEEEecCCceE--EEEeecccceeeEEEe-----cccCCEEEEcCCccceEEEEEeeccceeeecc
Confidence 775 9999999999855 6665443 4444555678999999 6789999999865 899999999988888876
Q ss_pred cCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCC
Q 000685 209 GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADK 288 (1352)
Q Consensus 209 ~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~Dg 288 (1352)
+|...++|++ ++|||+++++|+.||.|+|||..++-|..+ +..|..+|+.+.|+. .++.+++.|.||
T Consensus 348 -gH~~~i~~l~---YSpDgq~iaTG~eDgKVKvWn~~SgfC~vT------FteHts~Vt~v~f~~---~g~~llssSLDG 414 (893)
T KOG0291|consen 348 -GHSDRITSLA---YSPDGQLIATGAEDGKVKVWNTQSGFCFVT------FTEHTSGVTAVQFTA---RGNVLLSSSLDG 414 (893)
T ss_pred -ccccceeeEE---ECCCCcEEEeccCCCcEEEEeccCceEEEE------eccCCCceEEEEEEe---cCCEEEEeecCC
Confidence 9999999998 899999999999999999999999987665 688999999999998 799999999999
Q ss_pred cEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEE-EEecCCe---EEeccCCcccccccCccccCCCCCCeEE
Q 000685 289 TLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH---IWAIEHPTYSALTRPLCELSSLVPPQVL 364 (1352)
Q Consensus 289 tV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lL-S~s~Dg~---IWDi~t~~~~~~~~~l~~~~~~~~~~~l 364 (1352)
+|+.||+..+++.++|...... ...|++..|.|.++ +|+.|.. ||++.++. .+..+
T Consensus 415 tVRAwDlkRYrNfRTft~P~p~-----QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq---------------llDiL 474 (893)
T KOG0291|consen 415 TVRAWDLKRYRNFRTFTSPEPI-----QFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ---------------LLDIL 474 (893)
T ss_pred eEEeeeecccceeeeecCCCce-----eeeEEEEcCCCCEEEeeccceEEEEEEEeecCe---------------eeehh
Confidence 9999999999999997544332 23489999999988 5667763 89999874 35678
Q ss_pred ecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCCCCC-cccc--------CCCCCCCCceEEEEecCeEEEEEeee
Q 000685 365 AHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPA-VAPL--------PTPSGSRDHSAVYIVERELKLVNFQL 435 (1352)
Q Consensus 365 ~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~-i~~l--------~~~s~s~~~~~~~~~~~~lkl~~fq~ 435 (1352)
.+|.. +|.++.|+| .+.+|++||.|.+| |+||+-+... +.++ .++..+.+..++-..++++.+++.+.
T Consensus 475 sGHEg-PVs~l~f~~-~~~~LaS~SWDkTV-RiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~ 551 (893)
T KOG0291|consen 475 SGHEG-PVSGLSFSP-DGSLLASGSWDKTV-RIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKE 551 (893)
T ss_pred cCCCC-cceeeEEcc-ccCeEEeccccceE-EEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhh
Confidence 89988 999999999 57789999999997 9999876421 1111 11112223334445566655444432
Q ss_pred ccCCCCCCCCCcccccCCcccCCCchhhhhhhccccccccCCCCCccEEEEcCCCCEEEEEECCCCcEEEEEeCCceEe
Q 000685 436 SSAANPSLGNNGSLSETGRLKGDLPDALQIKQIKKHISTPVPHDSYSILSVSSSGKYLAVVWPDIPYFSVYKVSDWSIV 514 (1352)
Q Consensus 436 ~~~~n~~~g~~~~~s~~G~~~~~~~~~l~v~~~~r~i~t~~~~e~~s~l~~SpdGrylavv~~~~g~y~Iy~i~~~~~i 514 (1352)
..... +-+|+.....++..+-.... .+......++.+.+|+||++| +....+..+.||++.+.-++
T Consensus 552 ~~q~~---------~IdgrkD~~~gR~~~D~~ta---~~sa~~K~Ftti~ySaDG~~I-lAgG~sn~iCiY~v~~~vll 617 (893)
T KOG0291|consen 552 AVQVG---------SIDGRKDLSGGRKETDRITA---ENSAKGKTFTTICYSADGKCI-LAGGESNSICIYDVPEGVLL 617 (893)
T ss_pred ceeec---------cccchhhccccccccceeeh---hhcccCCceEEEEEcCCCCEE-EecCCcccEEEEECchhhee
Confidence 11111 12333222222221100000 111122345689999999999 66667788899998764443
No 10
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=8.7e-29 Score=294.65 Aligned_cols=414 Identities=14% Similarity=0.237 Sum_probs=280.6
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCcccccc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~ 83 (1352)
+..|..|.++|..++|||+++++++|+.|..|+||++.+.+|+.++..|
T Consensus 44 i~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GH------------------------------- 92 (1202)
T KOG0292|consen 44 IDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGH------------------------------- 92 (1202)
T ss_pred HhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccc-------------------------------
Confidence 5678999999999999999999999999999999999998888777622
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCcccccccccc
Q 000685 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1352)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~ 162 (1352)
.+.|+.+.|++.-+ |++++|+|++| +||++++++ +....+
T Consensus 93 ------------------------------------lDYVRt~~FHheyP-WIlSASDDQTIrIWNwqsr~~--iavltG 133 (1202)
T KOG0292|consen 93 ------------------------------------LDYVRTVFFHHEYP-WILSASDDQTIRIWNWQSRKC--IAVLTG 133 (1202)
T ss_pred ------------------------------------cceeEEeeccCCCc-eEEEccCCCeEEEEeccCCce--EEEEec
Confidence 55688888999987 99999999999 669999866 666899
Q ss_pred CCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCC--------C--------------------eEEEEEecCCCCC
Q 000685 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS--------W--------------------KLVRRYTGGHKGS 214 (1352)
Q Consensus 163 h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t--------~--------------------~~i~~l~~gH~~~ 214 (1352)
|+.+|+|..|| |...+++++|.|.+||+||+.. + ..++.+.+||...
T Consensus 134 HnHYVMcAqFh-----ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRG 208 (1202)
T KOG0292|consen 134 HNHYVMCAQFH-----PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRG 208 (1202)
T ss_pred CceEEEeeccC-----CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccc
Confidence 99999999995 5788999999999999999842 1 1234445699999
Q ss_pred eeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEE
Q 000685 215 ISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWD 294 (1352)
Q Consensus 215 V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWD 294 (1352)
|+-++ |+|.-.+|+||+.|+.|++|.+...+.- ..-+..||.+.|.++-||| ..++|+|.|.|++|+|||
T Consensus 209 VNwaA---fhpTlpliVSG~DDRqVKlWrmnetKaW----EvDtcrgH~nnVssvlfhp---~q~lIlSnsEDksirVwD 278 (1202)
T KOG0292|consen 209 VNWAA---FHPTLPLIVSGADDRQVKLWRMNETKAW----EVDTCRGHYNNVSSVLFHP---HQDLILSNSEDKSIRVWD 278 (1202)
T ss_pred cceEE---ecCCcceEEecCCcceeeEEEeccccce----eehhhhcccCCcceEEecC---ccceeEecCCCccEEEEe
Confidence 99554 8999999999999999999999865432 1335799999999999999 688999999999999999
Q ss_pred CCCCeEEEEecCCCcccccCCceeEEEeCCCCCEEEEecCCe--EEeccCCc--ccccc--------cCc--cccCC--C
Q 000685 295 TVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSH--IWAIEHPT--YSALT--------RPL--CELSS--L 358 (1352)
Q Consensus 295 l~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lLS~s~Dg~--IWDi~t~~--~~~~~--------~~l--~~~~~--~ 358 (1352)
+...+.+++| +......|.++.+|...+++++.|+- ||.+.... +.-.. +.+ .++.. .
T Consensus 279 m~kRt~v~tf------rrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d 352 (1202)
T KOG0292|consen 279 MTKRTSVQTF------RRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKD 352 (1202)
T ss_pred cccccceeee------eccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEccceEEeeecccccc
Confidence 9999999885 44567789999999999998888863 66665211 10000 000 01111 1
Q ss_pred CCCeEEecCC--cccEEEEEEecCCCcEEEEEECCCeEEEEecCCCCCCccccC-CCCCCCCceEEEEecCeEEEEEeee
Q 000685 359 VPPQVLAHHK--KLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPLP-TPSGSRDHSAVYIVERELKLVNFQL 435 (1352)
Q Consensus 359 ~~~~~l~~h~--~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~i~~l~-~~s~s~~~~~~~~~~~~lkl~~fq~ 435 (1352)
..+..++..+ ..++.++.++|..+..++|...|+...-+..+.+.+....-. ..-.+.....+|+..++.-..+-
T Consensus 353 ~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNrfavl~k-- 430 (1202)
T KOG0292|consen 353 TAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVARNRFAVLDK-- 430 (1202)
T ss_pred ceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEEecceEEEEe--
Confidence 1222222222 237888999997666666666566544455444332222111 11112233455555444221111
Q ss_pred ccCCCCCCCCCcccccCCcccCCCchhhhhhhccccccccCCCCCccEEEEcCCCCEEEEEECCCCcEEEEEeCCceE--
Q 000685 436 SSAANPSLGNNGSLSETGRLKGDLPDALQIKQIKKHISTPVPHDSYSILSVSSSGKYLAVVWPDIPYFSVYKVSDWSI-- 513 (1352)
Q Consensus 436 ~~~~n~~~g~~~~~s~~G~~~~~~~~~l~v~~~~r~i~t~~~~e~~s~l~~SpdGrylavv~~~~g~y~Iy~i~~~~~-- 513 (1352)
+.. .+. ...++. . ..|.+..+... ..+-+--.|..+ +. ....+.+|++...+.
T Consensus 431 ~~~-------------~v~--ik~l~N---~-vtkkl~~~~~~---~~IF~ag~g~ll-l~--~~~~v~lfdvQq~~~~~ 485 (1202)
T KOG0292|consen 431 SNE-------------QVV--IKNLKN---K-VTKKLLLPEST---DDIFYAGTGNLL-LR--SPDSVTLFDVQQKKKVG 485 (1202)
T ss_pred cCc-------------ceE--Eecccc---h-hhhcccCcccc---cceeeccCccEE-EE--cCCeEEEEEeecceEEE
Confidence 000 000 000000 0 01112222111 134555566666 33 556788888876544
Q ss_pred -eeccceeEEEeccCCCeEEEEe
Q 000685 514 -VDSGSARLLAWDTCRDRFAILE 535 (1352)
Q Consensus 514 -i~~G~~~~~aWs~~~~~fAvl~ 535 (1352)
+....+.-++|+.+..+-|++.
T Consensus 486 si~~s~vkyvvws~dm~~vAll~ 508 (1202)
T KOG0292|consen 486 SIKVSKVKYVVWSNDMSRVALLS 508 (1202)
T ss_pred EEecCceeEEEEcCccchhhhcc
Confidence 3355678889987766666553
No 11
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2.6e-30 Score=305.33 Aligned_cols=353 Identities=18% Similarity=0.274 Sum_probs=268.4
Q ss_pred eEEecC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec--c--ccceeEecccccCCC-
Q 000685 4 LKAFRP-TNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--A--KLEKLAEGELEHKGK- 77 (1352)
Q Consensus 4 l~~L~g-Hs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs--~--dg~~Lasgs~d~~g~- 77 (1352)
++.++. |..+|..++|+|.+..|++|+.||.|+|||+..+.+.+.|+. |.+-+.++. + ....|++|..|...+
T Consensus 97 irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG-~gGvVssl~F~~~~~~~lL~sg~~D~~v~v 175 (775)
T KOG0319|consen 97 IRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKG-HGGVVSSLLFHPHWNRWLLASGATDGTVRV 175 (775)
T ss_pred hHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecC-CCceEEEEEeCCccchhheeecCCCceEEE
Confidence 345566 999999999999999999999999999999999999999984 334444333 2 234567776665311
Q ss_pred --------ccccc--cCCceEEEEE-------------------------------------------------------
Q 000685 78 --------PTEAM--RGGSVKQVNF------------------------------------------------------- 92 (1352)
Q Consensus 78 --------~l~~l--~~g~V~sVaF------------------------------------------------------- 92 (1352)
|+.++ |.+.|++++|
T Consensus 176 wnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~T 255 (775)
T KOG0319|consen 176 WNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIIT 255 (775)
T ss_pred EEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEE
Confidence 22222 2255555555
Q ss_pred --cCCeEEEEEcCCccccccc-----------------------------------------------------------
Q 000685 93 --YDDDVRFWQLWRNRAAAAE----------------------------------------------------------- 111 (1352)
Q Consensus 93 --~Dg~IrlWDl~t~~~i~~~----------------------------------------------------------- 111 (1352)
.+|.+++||..++++....
T Consensus 256 aG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e 335 (775)
T KOG0319|consen 256 AGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPE 335 (775)
T ss_pred ecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCc
Confidence 3455566665554433100
Q ss_pred ----------------------cccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCC--ccccccccccCCCC
Q 000685 112 ----------------------APTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTM--RGRDIPKQELDNKS 166 (1352)
Q Consensus 112 ----------------------~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~--~~~~i~~~~~h~~~ 166 (1352)
.....+ |+..|.++.-..+|. +|++|+.|+.+ +|-++.+ +..++....+|...
T Consensus 336 ~~~laVATNs~~lr~y~~~~~~c~ii~G-H~e~vlSL~~~~~g~-llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~s 413 (775)
T KOG0319|consen 336 ESHLAVATNSPELRLYTLPTSYCQIIPG-HTEAVLSLDVWSSGD-LLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNS 413 (775)
T ss_pred cceEEEEeCCCceEEEecCCCceEEEeC-chhheeeeeecccCc-EEEEecCCceEEEEEecCCcchhhhhhhhcccccc
Confidence 011122 255666776444564 99999999988 4545333 23345566889999
Q ss_pred eEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCe-----EEE---EEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCc
Q 000685 167 LVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK-----LVR---RYTGGHKGSISCLMTFMASSGEALLVSGGSDGL 238 (1352)
Q Consensus 167 V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~-----~i~---~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGt 238 (1352)
|.++++. .....+++++|.|++|++|++...+ .+. .....|...|+|++ .+|+..+|+|||.|++
T Consensus 414 vgava~~----~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Va---ia~ndkLiAT~SqDkt 486 (775)
T KOG0319|consen 414 VGAVAGS----KLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVA---IAPNDKLIATGSQDKT 486 (775)
T ss_pred cceeeec----ccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceE---ecCCCceEEecccccc
Confidence 9999993 2234789999999999999997521 111 11247999999998 8999999999999999
Q ss_pred EEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCcee
Q 000685 239 LILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASW 318 (1352)
Q Consensus 239 VrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~ 318 (1352)
.++|++........ |.||..+|+++.|+| ..+.++|+|.|++|+||.+.++.|+++ +.||+..|.
T Consensus 487 aKiW~le~~~l~~v------LsGH~RGvw~V~Fs~---~dq~laT~SgD~TvKIW~is~fSClkT------~eGH~~aVl 551 (775)
T KOG0319|consen 487 AKIWDLEQLRLLGV------LSGHTRGVWCVSFSK---NDQLLATCSGDKTVKIWSISTFSCLKT------FEGHTSAVL 551 (775)
T ss_pred eeeecccCceEEEE------eeCCccceEEEEecc---ccceeEeccCCceEEEEEeccceeeee------ecCccceeE
Confidence 99999997665544 899999999999999 678999999999999999999999999 589999999
Q ss_pred EEEeCCCCC-EEEEecCC--eEEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEE
Q 000685 319 CHPRAPNLD-ILTCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVII 395 (1352)
Q Consensus 319 svafspdg~-lLS~s~Dg--~IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~Il 395 (1352)
.+.|-.+|. +++++.|| +||++.+. .+..++..|.+ +||++..++ ....+++|+.||.|+
T Consensus 552 ra~F~~~~~qliS~~adGliKlWnikt~---------------eC~~tlD~H~D-rvWaL~~~~-~~~~~~tgg~Dg~i~ 614 (775)
T KOG0319|consen 552 RASFIRNGKQLISAGADGLIKLWNIKTN---------------ECEMTLDAHND-RVWALSVSP-LLDMFVTGGGDGRII 614 (775)
T ss_pred eeeeeeCCcEEEeccCCCcEEEEeccch---------------hhhhhhhhccc-eeEEEeecC-ccceeEecCCCeEEE
Confidence 999998877 67999999 49999976 45788999999 999999999 566899999999984
Q ss_pred EEec
Q 000685 396 SEFD 399 (1352)
Q Consensus 396 riWd 399 (1352)
+|.
T Consensus 615 -~wk 617 (775)
T KOG0319|consen 615 -FWK 617 (775)
T ss_pred -Eee
Confidence 774
No 12
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=5.5e-31 Score=294.79 Aligned_cols=243 Identities=21% Similarity=0.303 Sum_probs=219.4
Q ss_pred eEEecCCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec--cccceeEecccccCCCcc
Q 000685 4 LKAFRPTNDKIVKIQLHPT--HPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPT 79 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPd--g~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l 79 (1352)
+++|.||++.|.++.|||. +..||||+.||+|++|++.+.+.+..+. +|...+.-+. |+|++|.+++
T Consensus 210 ~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~-gH~~RVs~VafHPsG~~L~Tas-------- 280 (459)
T KOG0272|consen 210 LQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLE-GHLARVSRVAFHPSGKFLGTAS-------- 280 (459)
T ss_pred eEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhh-cchhhheeeeecCCCceeeecc--------
Confidence 7899999999999999997 5699999999999999999989999998 5556666665 9999999987
Q ss_pred ccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCcccccc
Q 000685 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIP 158 (1352)
Q Consensus 80 ~~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~ 158 (1352)
+|.+-|+||+.++..+ -...+| ...|.+++|++||. ++++|+.|..- +||+.++++ +.
T Consensus 281 -------------fD~tWRlWD~~tk~El----L~QEGH-s~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr~--im 339 (459)
T KOG0272|consen 281 -------------FDSTWRLWDLETKSEL----LLQEGH-SKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGRC--IM 339 (459)
T ss_pred -------------cccchhhcccccchhh----Hhhccc-ccccceeEecCCCc-eeeccCccchhheeecccCcE--EE
Confidence 7889999999998775 344455 88999999999998 99999999988 679999976 55
Q ss_pred ccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCC-CCCEEEEEeCCC
Q 000685 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASS-GEALLVSGGSDG 237 (1352)
Q Consensus 159 ~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~-dg~~LaSgS~DG 237 (1352)
.+.+|.+.|..|+| +|+|..|+|||.|++++|||++..+.+.++. +|.+-|+.++ ++| .|.+|+|+|.|+
T Consensus 340 ~L~gH~k~I~~V~f-----sPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip-AH~nlVS~Vk---~~p~~g~fL~TasyD~ 410 (459)
T KOG0272|consen 340 FLAGHIKEILSVAF-----SPNGYHLATGSSDNTCKVWDLRMRSELYTIP-AHSNLVSQVK---YSPQEGYFLVTASYDN 410 (459)
T ss_pred EecccccceeeEeE-----CCCceEEeecCCCCcEEEeeecccccceecc-cccchhhheE---ecccCCeEEEEcccCc
Confidence 68889999999999 7899999999999999999999988888887 9999999998 676 899999999999
Q ss_pred cEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEE
Q 000685 238 LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWD 294 (1352)
Q Consensus 238 tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWD 294 (1352)
++++|...++++++. +.||++.|.++++++ ++..|+|++.|+++++|.
T Consensus 411 t~kiWs~~~~~~~ks------LaGHe~kV~s~Dis~---d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 411 TVKIWSTRTWSPLKS------LAGHEGKVISLDISP---DSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ceeeecCCCcccchh------hcCCccceEEEEecc---CCceEEEeccCceeeecc
Confidence 999999999887665 899999999999999 899999999999999996
No 13
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.1e-29 Score=279.87 Aligned_cols=289 Identities=19% Similarity=0.268 Sum_probs=250.2
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCcccccc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~ 83 (1352)
.+.+.||...|+.+-|||+-..+++++.|++|++||+.+|++...++.|
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGH------------------------------- 149 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGH------------------------------- 149 (406)
T ss_pred hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhcc-------------------------------
Confidence 3467889999999999999999999999999999999998886666522
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCcccccccccc
Q 000685 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1352)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~ 162 (1352)
.+.+.++.|+..|+ ++++++.|-.+ .||..+. .+++....+
T Consensus 150 ------------------------------------t~sv~di~~~a~Gk-~l~tcSsDl~~~LWd~~~~-~~c~ks~~g 191 (406)
T KOG0295|consen 150 ------------------------------------TDSVFDISFDASGK-YLATCSSDLSAKLWDFDTF-FRCIKSLIG 191 (406)
T ss_pred ------------------------------------ccceeEEEEecCcc-EEEecCCccchhheeHHHH-HHHHHHhcC
Confidence 33477788888897 99999999866 7787764 456777889
Q ss_pred CCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEE
Q 000685 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1352)
Q Consensus 163 h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVW 242 (1352)
|...|.++.|.| .|.+|++++.|.+|+.|++.++-+++++. +|...|..++ .+.||.++++|+.|.+|++|
T Consensus 192 h~h~vS~V~f~P-----~gd~ilS~srD~tik~We~~tg~cv~t~~-~h~ewvr~v~---v~~DGti~As~s~dqtl~vW 262 (406)
T KOG0295|consen 192 HEHGVSSVFFLP-----LGDHILSCSRDNTIKAWECDTGYCVKTFP-GHSEWVRMVR---VNQDGTIIASCSNDQTLRVW 262 (406)
T ss_pred cccceeeEEEEe-----cCCeeeecccccceeEEecccceeEEecc-CchHhEEEEE---ecCCeeEEEecCCCceEEEE
Confidence 999999999965 68999999999999999999999999998 9999999997 89999999999999999999
Q ss_pred eCCCCCccceecccccccccccceEEEEeeccC------------CCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcc
Q 000685 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVM------------GGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKL 310 (1352)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~------------~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l 310 (1352)
-+.++++... +..|+.+|.+++|-|.. +.+.++.+++.|++|++||+.+|.|+.+ +
T Consensus 263 ~~~t~~~k~~------lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t------L 330 (406)
T KOG0295|consen 263 VVATKQCKAE------LREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT------L 330 (406)
T ss_pred Eeccchhhhh------hhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE------E
Confidence 9999876554 78999999999998731 1246999999999999999999999998 6
Q ss_pred cccCCceeEEEeCCCCCEE-EEecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEE
Q 000685 311 ACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVAT 387 (1352)
Q Consensus 311 ~~hs~~V~svafspdg~lL-S~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLat 387 (1352)
.+|.+.|..++|+|.|++| ++..|++ +||+++. .+..++..|.. -+.+++|+.+ .-++++
T Consensus 331 ~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~---------------~cmk~~~ah~h-fvt~lDfh~~-~p~VvT 393 (406)
T KOG0295|consen 331 VGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL---------------QCMKTLEAHEH-FVTSLDFHKT-APYVVT 393 (406)
T ss_pred ecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc---------------eeeeccCCCcc-eeEEEecCCC-CceEEe
Confidence 8999999999999999966 7888885 8999975 34566677776 8999999995 447999
Q ss_pred EECCCeEEEEecC
Q 000685 388 GTNVGVIISEFDP 400 (1352)
Q Consensus 388 Gs~DG~IlriWd~ 400 (1352)
|+-|..+ ++|..
T Consensus 394 GsVdqt~-KvwEc 405 (406)
T KOG0295|consen 394 GSVDQTV-KVWEC 405 (406)
T ss_pred cccccee-eeeec
Confidence 9999997 89964
No 14
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.6e-28 Score=260.52 Aligned_cols=298 Identities=15% Similarity=0.190 Sum_probs=233.6
Q ss_pred eeEEecCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCcccc
Q 000685 3 RLKAFRPTNDKIVKIQLHPT-HPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEA 81 (1352)
Q Consensus 3 ~l~~L~gHs~~V~~lafSPd-g~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~ 81 (1352)
.++.+++|.++|..++|||- |..||||+.|+.||||+...+.... .+
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~-ck------------------------------- 53 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWT-CK------------------------------- 53 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEE-EE-------------------------------
Confidence 47899999999999999998 8899999999999999977421110 00
Q ss_pred ccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCcccccccc
Q 000685 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQ 160 (1352)
Q Consensus 82 l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~ 160 (1352)
..+.+.|...|++++|+|.|+ +|++++.|.++ +|.-..++..++..+
T Consensus 54 -------------------------------~vld~~hkrsVRsvAwsp~g~-~La~aSFD~t~~Iw~k~~~efecv~~l 101 (312)
T KOG0645|consen 54 -------------------------------TVLDDGHKRSVRSVAWSPHGR-YLASASFDATVVIWKKEDGEFECVATL 101 (312)
T ss_pred -------------------------------EeccccchheeeeeeecCCCc-EEEEeeccceEEEeecCCCceeEEeee
Confidence 011112366799999999998 99999999999 554445667788889
Q ss_pred ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCC---eEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCC
Q 000685 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW---KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDG 237 (1352)
Q Consensus 161 ~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~---~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DG 237 (1352)
++|...|.|++| +.+|++|++|+.|.+|-||..... .++..+. +|...|..+. ++|...+|+|+|.|+
T Consensus 102 EGHEnEVK~Vaw-----s~sG~~LATCSRDKSVWiWe~deddEfec~aVL~-~HtqDVK~V~---WHPt~dlL~S~SYDn 172 (312)
T KOG0645|consen 102 EGHENEVKCVAW-----SASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ-EHTQDVKHVI---WHPTEDLLFSCSYDN 172 (312)
T ss_pred eccccceeEEEE-----cCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeec-cccccccEEE---EcCCcceeEEeccCC
Confidence 999999999999 889999999999999999998743 6667776 9999999997 588889999999999
Q ss_pred cEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCce
Q 000685 238 LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVAS 317 (1352)
Q Consensus 238 tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V 317 (1352)
+|++|+-..+. .+....++.+|...|.+++|++ .|..|+++++|++|+||...+.- -..|+..+
T Consensus 173 TIk~~~~~~dd---dW~c~~tl~g~~~TVW~~~F~~---~G~rl~s~sdD~tv~Iw~~~~~~----------~~~~sr~~ 236 (312)
T KOG0645|consen 173 TIKVYRDEDDD---DWECVQTLDGHENTVWSLAFDN---IGSRLVSCSDDGTVSIWRLYTDL----------SGMHSRAL 236 (312)
T ss_pred eEEEEeecCCC---CeeEEEEecCccceEEEEEecC---CCceEEEecCCcceEeeeeccCc----------chhcccce
Confidence 99999877322 1334556899999999999999 78999999999999999966221 24577889
Q ss_pred eEEEeCCCCCEEEEecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEE
Q 000685 318 WCHPRAPNLDILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVII 395 (1352)
Q Consensus 318 ~svafspdg~lLS~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~Il 395 (1352)
+.++|. ++.+.+++.|+. |+..... ...+.+.+- ...-..|.. .|+++.|.|..+++|++|++||.|
T Consensus 237 Y~v~W~-~~~IaS~ggD~~i~lf~~s~~----~d~p~~~l~----~~~~~aHe~-dVNsV~w~p~~~~~L~s~~DDG~v- 305 (312)
T KOG0645|consen 237 YDVPWD-NGVIASGGGDDAIRLFKESDS----PDEPSWNLL----AKKEGAHEV-DVNSVQWNPKVSNRLASGGDDGIV- 305 (312)
T ss_pred Eeeeec-ccceEeccCCCEEEEEEecCC----CCCchHHHH----Hhhhccccc-ccceEEEcCCCCCceeecCCCceE-
Confidence 999999 777778888885 5544321 111111110 111234555 899999999668899999999997
Q ss_pred EEecC
Q 000685 396 SEFDP 400 (1352)
Q Consensus 396 riWd~ 400 (1352)
++|.+
T Consensus 306 ~~W~l 310 (312)
T KOG0645|consen 306 NFWEL 310 (312)
T ss_pred EEEEe
Confidence 89964
No 15
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.3e-27 Score=282.19 Aligned_cols=372 Identities=16% Similarity=0.198 Sum_probs=260.2
Q ss_pred eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--cEEEEEe-ccCccceEEeccc-------------cce
Q 000685 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHR--QVIYELK-AGGVDQRRLVGAK-------------LEK 66 (1352)
Q Consensus 3 ~l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg--~~i~t~~-~~~~~~i~~vs~d-------------g~~ 66 (1352)
..+.|.||++.|.++-|..+..-|+|.+.||.+.+|.+... .....-+ ..+.+........ -.+
T Consensus 181 ~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ 260 (893)
T KOG0291|consen 181 FTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHY 260 (893)
T ss_pred ceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeee
Confidence 46788999999999999999999999999999999998722 1100000 0000000000000 000
Q ss_pred eEecccccCCCccccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecC--cE
Q 000685 67 LAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVN--KA 144 (1352)
Q Consensus 67 Lasgs~d~~g~~l~~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D--~~ 144 (1352)
+...+ ..-.+...-.+..+..++|..|...++.+..-.+++. ...+ ...|..+.|+..|+ |++.||.. ++
T Consensus 261 ln~~~--~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~---LSis--~~~I~t~~~N~tGD-WiA~g~~klgQL 332 (893)
T KOG0291|consen 261 LNQNS--SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHS---LSIS--DQKILTVSFNSTGD-WIAFGCSKLGQL 332 (893)
T ss_pred ecccc--cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEE---eecc--cceeeEEEecccCC-EEEEcCCccceE
Confidence 00000 0011111122345667777889999999988877641 1111 45789999999998 88888876 77
Q ss_pred EEEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeC
Q 000685 145 IFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMAS 224 (1352)
Q Consensus 145 I~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s 224 (1352)
++|++++... +...++|...++|+++ ||||+++++|++||.|+|||..++-|+.++. .|+..|+.++ |+
T Consensus 333 lVweWqsEsY--VlKQQgH~~~i~~l~Y-----SpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt-eHts~Vt~v~---f~ 401 (893)
T KOG0291|consen 333 LVWEWQSESY--VLKQQGHSDRITSLAY-----SPDGQLIATGAEDGKVKVWNTQSGFCFVTFT-EHTSGVTAVQ---FT 401 (893)
T ss_pred EEEEeeccce--eeeccccccceeeEEE-----CCCCcEEEeccCCCcEEEEeccCceEEEEec-cCCCceEEEE---EE
Confidence 7998887643 5567899999999999 8899999999999999999999999999998 9999999998 78
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCcccee--------------------------------------cccccccccccce
Q 000685 225 SGEALLVSGGSDGLLILWSADHGQDSREL--------------------------------------VPKLSLKAHDGGV 266 (1352)
Q Consensus 225 ~dg~~LaSgS~DGtVrVWDl~tg~~~~~~--------------------------------------~~~~~l~gH~~~V 266 (1352)
..++.+++.|.||+||.||+......+++ ...-.+.||+++|
T Consensus 402 ~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPV 481 (893)
T KOG0291|consen 402 ARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPV 481 (893)
T ss_pred ecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcc
Confidence 89999999999999999999643221110 0122367999999
Q ss_pred EEEEeeccCCCCCEEEEEECCCcEEEEECCCCe-EEEEecCCCcccccCCceeEEEeCCCCCEE-EEecCCe--EEeccC
Q 000685 267 VAVELSRVMGGSPQLITIGADKTLAIWDTVSFK-ELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEH 342 (1352)
Q Consensus 267 ~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~-~l~~~~~~~~l~~hs~~V~svafspdg~lL-S~s~Dg~--IWDi~t 342 (1352)
.+++|+| .+..|+|+|.|++||+||+-... .+.+ -.+...+..++|+|+|+-| ++.-||. +||+..
T Consensus 482 s~l~f~~---~~~~LaS~SWDkTVRiW~if~s~~~vEt-------l~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~ 551 (893)
T KOG0291|consen 482 SGLSFSP---DGSLLASGSWDKTVRIWDIFSSSGTVET-------LEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKE 551 (893)
T ss_pred eeeEEcc---ccCeEEeccccceEEEEEeeccCceeee-------EeeccceeEEEEcCCCCeEEEEEecceEEEEEhhh
Confidence 9999999 78999999999999999986542 2333 2355677899999999955 6778885 899985
Q ss_pred CcccccccCccccCC-CCCCeEEecC---CcccEEEEEEecCCCcEEEEEECCCeEEEEecCCCCCC
Q 000685 343 PTYSALTRPLCELSS-LVPPQVLAHH---KKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPA 405 (1352)
Q Consensus 343 ~~~~~~~~~l~~~~~-~~~~~~l~~h---~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~ 405 (1352)
........-..+..+ ......+... ....++.+++++ ++..|.+|+..+.| +++++++.-.
T Consensus 552 ~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa-DG~~IlAgG~sn~i-CiY~v~~~vl 616 (893)
T KOG0291|consen 552 AVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSA-DGKCILAGGESNSI-CIYDVPEGVL 616 (893)
T ss_pred ceeeccccchhhccccccccceeehhhcccCCceEEEEEcC-CCCEEEecCCcccE-EEEECchhhe
Confidence 422111111111111 1111111111 123799999999 67778888888887 7999876433
No 16
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=5.1e-28 Score=259.31 Aligned_cols=302 Identities=16% Similarity=0.174 Sum_probs=233.8
Q ss_pred eeeEEecCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccc
Q 000685 2 LRLKAFRPTNDKIVKIQLHPTHP-WLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTE 80 (1352)
Q Consensus 2 L~l~~L~gHs~~V~~lafSPdg~-~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~ 80 (1352)
+...+|++|++.|+.++..+.++ .|++++.|.++.+|++....
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd------------------------------------ 49 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDD------------------------------------ 49 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCc------------------------------------
Confidence 34568999999999999999855 88899999999999976420
Q ss_pred cccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccc
Q 000685 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPK 159 (1352)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~ 159 (1352)
...|.. .....+| ...|..+..++||+ +.++++.|+++ .||+.+++. ...
T Consensus 50 ---------------------~~~G~~----~r~~~GH-sH~v~dv~~s~dg~-~alS~swD~~lrlWDl~~g~~--t~~ 100 (315)
T KOG0279|consen 50 ---------------------IKYGVP----VRRLTGH-SHFVSDVVLSSDGN-FALSASWDGTLRLWDLATGES--TRR 100 (315)
T ss_pred ---------------------cccCce----eeeeecc-ceEecceEEccCCc-eEEeccccceEEEEEecCCcE--EEE
Confidence 000000 0223333 66788899999997 99999999999 569999854 445
Q ss_pred cccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCC--CCEEEEEeCCC
Q 000685 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSG--EALLVSGGSDG 237 (1352)
Q Consensus 160 ~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~d--g~~LaSgS~DG 237 (1352)
+.+|...|.+++| ++|.+.|++|+.|.+|++||............+|.+.|.|++ |+|+ ..+|+++|.|+
T Consensus 101 f~GH~~dVlsva~-----s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvr---fsP~~~~p~Ivs~s~Dk 172 (315)
T KOG0279|consen 101 FVGHTKDVLSVAF-----STDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVR---FSPNESNPIIVSASWDK 172 (315)
T ss_pred EEecCCceEEEEe-----cCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEE---EcCCCCCcEEEEccCCc
Confidence 8899999999999 789999999999999999998754443333334589999998 5665 78999999999
Q ss_pred cEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCce
Q 000685 238 LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVAS 317 (1352)
Q Consensus 238 tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V 317 (1352)
+|++||+++-+.... +.||.+.++.++++| ||.++++|+.||.+.+||++.++++.. ..|...|
T Consensus 173 tvKvWnl~~~~l~~~------~~gh~~~v~t~~vSp---DGslcasGgkdg~~~LwdL~~~k~lys-------l~a~~~v 236 (315)
T KOG0279|consen 173 TVKVWNLRNCQLRTT------FIGHSGYVNTVTVSP---DGSLCASGGKDGEAMLWDLNEGKNLYS-------LEAFDIV 236 (315)
T ss_pred eEEEEccCCcchhhc------cccccccEEEEEECC---CCCEEecCCCCceEEEEEccCCceeEe-------ccCCCeE
Confidence 999999998765444 689999999999999 899999999999999999999999887 4788899
Q ss_pred eEEEeCCCCCEEEEecCC--eEEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEE
Q 000685 318 WCHPRAPNLDILTCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVII 395 (1352)
Q Consensus 318 ~svafspdg~lLS~s~Dg--~IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~Il 395 (1352)
.+++|+|+...|+...+. +|||+.+.... .....+..+. ... .......+++|++ ++..|++|..||.|
T Consensus 237 ~sl~fspnrywL~~at~~sIkIwdl~~~~~v--~~l~~d~~g~----s~~-~~~~~clslaws~-dG~tLf~g~td~~i- 307 (315)
T KOG0279|consen 237 NSLCFSPNRYWLCAATATSIKIWDLESKAVV--EELKLDGIGP----SSK-AGDPICLSLAWSA-DGQTLFAGYTDNVI- 307 (315)
T ss_pred eeEEecCCceeEeeccCCceEEEeccchhhh--hhcccccccc----ccc-cCCcEEEEEEEcC-CCcEEEeeecCCcE-
Confidence 999999998877544333 59999865320 0000011110 011 1122567789999 67779999999997
Q ss_pred EEecCC
Q 000685 396 SEFDPR 401 (1352)
Q Consensus 396 riWd~~ 401 (1352)
++|.+.
T Consensus 308 rv~qv~ 313 (315)
T KOG0279|consen 308 RVWQVA 313 (315)
T ss_pred EEEEee
Confidence 899754
No 17
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.5e-27 Score=274.52 Aligned_cols=241 Identities=15% Similarity=0.254 Sum_probs=210.0
Q ss_pred CCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEE
Q 000685 119 VTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLS 197 (1352)
Q Consensus 119 ~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWD 197 (1352)
++..|.++.|+|..+ +++++-.+|.+ +||+++... +..+.....+|++..|. ..-+++++|++|+.||||+
T Consensus 12 rSdRVKsVd~HPteP-w~la~LynG~V~IWnyetqtm--VksfeV~~~PvRa~kfi-----aRknWiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEP-WILAALYNGDVQIWNYETQTM--VKSFEVSEVPVRAAKFI-----ARKNWIVTGSDDMQIRVFN 83 (794)
T ss_pred cCCceeeeecCCCCc-eEEEeeecCeeEEEeccccee--eeeeeecccchhhheee-----eccceEEEecCCceEEEEe
Confidence 377899999999998 66666666655 889988753 55667778899999995 4688999999999999999
Q ss_pred CCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCC
Q 000685 198 MISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGG 277 (1352)
Q Consensus 198 l~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~d 277 (1352)
.++++.++.|. +|.++|.|++ .+|...+++|+|.|-+|++||.... |.+..++.||..-|.+++|+| .|
T Consensus 84 ynt~ekV~~Fe-AH~DyIR~ia---vHPt~P~vLtsSDDm~iKlW~we~~-----wa~~qtfeGH~HyVMqv~fnP--kD 152 (794)
T KOG0276|consen 84 YNTGEKVKTFE-AHSDYIRSIA---VHPTLPYVLTSSDDMTIKLWDWENE-----WACEQTFEGHEHYVMQVAFNP--KD 152 (794)
T ss_pred cccceeeEEee-ccccceeeee---ecCCCCeEEecCCccEEEEeeccCc-----eeeeeEEcCcceEEEEEEecC--CC
Confidence 99999999998 9999999998 8999999999999999999999864 344556899999999999999 68
Q ss_pred CCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCC---EEEEecCCe--EEeccCCcccccccCc
Q 000685 278 SPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD---ILTCVKDSH--IWAIEHPTYSALTRPL 352 (1352)
Q Consensus 278 g~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~---lLS~s~Dg~--IWDi~t~~~~~~~~~l 352 (1352)
.+.++|+|.|++|+||.+.+..+..+ +.+|...|+|+.+-+.|+ +++|+.|.+ |||+.+.
T Consensus 153 ~ntFaS~sLDrTVKVWslgs~~~nfT------l~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk--------- 217 (794)
T KOG0276|consen 153 PNTFASASLDRTVKVWSLGSPHPNFT------LEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK--------- 217 (794)
T ss_pred ccceeeeeccccEEEEEcCCCCCcee------eeccccCcceEEeccCCCcceEEecCCCceEEEeecchH---------
Confidence 99999999999999999998887777 689999999999998873 678888885 8999975
Q ss_pred cccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCC
Q 000685 353 CELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1352)
Q Consensus 353 ~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~~ 402 (1352)
.+++++.+|.. .|+++.||| .--++++|+.||++ |+|+..+
T Consensus 218 ------~CV~TLeGHt~-Nvs~v~fhp-~lpiiisgsEDGTv-riWhs~T 258 (794)
T KOG0276|consen 218 ------SCVQTLEGHTN-NVSFVFFHP-ELPIIISGSEDGTV-RIWNSKT 258 (794)
T ss_pred ------HHHHHhhcccc-cceEEEecC-CCcEEEEecCCccE-EEecCcc
Confidence 45888999998 899999999 56679999999997 9998664
No 18
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=5.3e-28 Score=255.05 Aligned_cols=290 Identities=20% Similarity=0.270 Sum_probs=240.9
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec--cccceeEecccccCCCccccccCCceEEEEEcCCeEEEEEc
Q 000685 25 WLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQL 102 (1352)
Q Consensus 25 ~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~~l~~g~V~sVaF~Dg~IrlWDl 102 (1352)
+|+|+++|.+||+|...+|.|.++++ |....+..++ |+++.|+.++ ...||+||+
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rTiq-h~dsqVNrLeiTpdk~~LAaa~----------------------~qhvRlyD~ 68 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRTIQ-HPDSQVNRLEITPDKKDLAAAG----------------------NQHVRLYDL 68 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEEEe-cCccceeeEEEcCCcchhhhcc----------------------CCeeEEEEc
Confidence 89999999999999999999999998 5555565555 9999998874 678999999
Q ss_pred CCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccccccCCCCeEEEEEeeccccCCC
Q 000685 103 WRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDV 181 (1352)
Q Consensus 103 ~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg 181 (1352)
+++... ...+..+ |...|.++.|..+|+ ++++|++||++ +||++...+.. ...+..+|+++..| |+.
T Consensus 69 ~S~np~--Pv~t~e~-h~kNVtaVgF~~dgr-WMyTgseDgt~kIWdlR~~~~qR---~~~~~spVn~vvlh-----pnQ 136 (311)
T KOG0315|consen 69 NSNNPN--PVATFEG-HTKNVTAVGFQCDGR-WMYTGSEDGTVKIWDLRSLSCQR---NYQHNSPVNTVVLH-----PNQ 136 (311)
T ss_pred cCCCCC--ceeEEec-cCCceEEEEEeecCe-EEEecCCCceEEEEeccCcccch---hccCCCCcceEEec-----CCc
Confidence 998653 1223334 488999999999997 99999999999 66998855433 34567999999994 578
Q ss_pred CEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccc
Q 000685 182 PLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKA 261 (1352)
Q Consensus 182 ~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~g 261 (1352)
..|++|..+|.|++||+....+...+...-...|.++. ..++|.+++.+...|...+|++-+++....+.|...++.
T Consensus 137 teLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~---v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a 213 (311)
T KOG0315|consen 137 TELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLT---VMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA 213 (311)
T ss_pred ceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEE---EcCCCcEEEEecCCccEEEEEccCCCccccceEhhheec
Confidence 88999999999999999998887777655667888887 899999999999999999999998877777788888999
Q ss_pred cccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCC-eEEEEecCCCcccccCCceeEEEeCCCCCEE-EEecCCe--E
Q 000685 262 HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSF-KELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--I 337 (1352)
Q Consensus 262 H~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg-~~l~~~~~~~~l~~hs~~V~svafspdg~lL-S~s~Dg~--I 337 (1352)
|.+-+..+.++| |+++|+++|.|.+++||+.++. +.-. .+.+|...+|..+||.||.+| +++.|+. +
T Consensus 214 h~~~il~C~lSP---d~k~lat~ssdktv~iwn~~~~~kle~------~l~gh~rWvWdc~FS~dg~YlvTassd~~~rl 284 (311)
T KOG0315|consen 214 HNGHILRCLLSP---DVKYLATCSSDKTVKIWNTDDFFKLEL------VLTGHQRWVWDCAFSADGEYLVTASSDHTARL 284 (311)
T ss_pred ccceEEEEEECC---CCcEEEeecCCceEEEEecCCceeeEE------EeecCCceEEeeeeccCccEEEecCCCCceee
Confidence 999999999999 8999999999999999999876 2222 368999999999999999966 7888884 9
Q ss_pred EeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEE
Q 000685 338 WAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVA 377 (1352)
Q Consensus 338 WDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~ 377 (1352)
|++..++ .+..+.+|.+ ...|++.
T Consensus 285 W~~~~~k---------------~v~qy~gh~K-~~vc~~l 308 (311)
T KOG0315|consen 285 WDLSAGK---------------EVRQYQGHHK-AAVCVAL 308 (311)
T ss_pred cccccCc---------------eeeecCCccc-ccEEEEe
Confidence 9998763 2445666766 4555543
No 19
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=1.5e-28 Score=269.51 Aligned_cols=294 Identities=15% Similarity=0.264 Sum_probs=242.7
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCcccccc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~ 83 (1352)
.+.+.||.++|.|+++.|...|++||+.|++|+|||+.+|++..++..+
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGh------------------------------- 192 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGH------------------------------- 192 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecch-------------------------------
Confidence 4678999999999999999999999999999999999999988877622
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCcccccccccc
Q 000685 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1352)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~ 162 (1352)
...|+.+++|+..+ ++.++++|+.+ .||+...+. +....+
T Consensus 193 ------------------------------------i~~vr~vavS~rHp-YlFs~gedk~VKCwDLe~nkv--IR~YhG 233 (460)
T KOG0285|consen 193 ------------------------------------IETVRGVAVSKRHP-YLFSAGEDKQVKCWDLEYNKV--IRHYHG 233 (460)
T ss_pred ------------------------------------hheeeeeeecccCc-eEEEecCCCeeEEEechhhhh--HHHhcc
Confidence 23467788888776 88999999988 789987654 556788
Q ss_pred CCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEE
Q 000685 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1352)
Q Consensus 163 h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVW 242 (1352)
|-..|.|++.| |.-..|++|+.|.++|+||+++...+..+. ||...|.++. +.+-...+++||.|++|++|
T Consensus 234 HlS~V~~L~lh-----PTldvl~t~grDst~RvWDiRtr~~V~~l~-GH~~~V~~V~---~~~~dpqvit~S~D~tvrlW 304 (460)
T KOG0285|consen 234 HLSGVYCLDLH-----PTLDVLVTGGRDSTIRVWDIRTRASVHVLS-GHTNPVASVM---CQPTDPQVITGSHDSTVRLW 304 (460)
T ss_pred ccceeEEEecc-----ccceeEEecCCcceEEEeeecccceEEEec-CCCCcceeEE---eecCCCceEEecCCceEEEe
Confidence 89999999995 578899999999999999999999999987 9999999996 56667789999999999999
Q ss_pred eCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEe
Q 000685 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPR 322 (1352)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svaf 322 (1352)
|++.|+-... +..|...|.+++.+| ....++++|.| .|+-|++..|..++. +.+|...|.+++.
T Consensus 305 Dl~agkt~~t------lt~hkksvral~lhP---~e~~fASas~d-nik~w~~p~g~f~~n------lsgh~~iintl~~ 368 (460)
T KOG0285|consen 305 DLRAGKTMIT------LTHHKKSVRALCLHP---KENLFASASPD-NIKQWKLPEGEFLQN------LSGHNAIINTLSV 368 (460)
T ss_pred eeccCceeEe------eecccceeeEEecCC---chhhhhccCCc-cceeccCCccchhhc------cccccceeeeeee
Confidence 9999986544 788999999999999 67788888876 579999999987766 6899999999999
Q ss_pred CCCCCEEEEecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecC
Q 000685 323 APNLDILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDP 400 (1352)
Q Consensus 323 spdg~lLS~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~ 400 (1352)
+.|+.+++|+..|. .||..++-. ....+.......+... ..|++.+|.. .+..|++|..|..| ++|.-
T Consensus 369 nsD~v~~~G~dng~~~fwdwksg~n------yQ~~~t~vqpGSl~sE--agI~as~fDk-tg~rlit~eadKtI-k~~ke 438 (460)
T KOG0285|consen 369 NSDGVLVSGGDNGSIMFWDWKSGHN------YQRGQTIVQPGSLESE--AGIFASCFDK-TGSRLITGEADKTI-KMYKE 438 (460)
T ss_pred ccCceEEEcCCceEEEEEecCcCcc------cccccccccCCccccc--cceeEEeecc-cCceEEeccCCcce-EEEec
Confidence 99999999999997 688886521 1111111222233322 3699999998 56779999999997 89975
Q ss_pred CC
Q 000685 401 RS 402 (1352)
Q Consensus 401 ~~ 402 (1352)
.+
T Consensus 439 De 440 (460)
T KOG0285|consen 439 DE 440 (460)
T ss_pred cc
Confidence 54
No 20
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=1.8e-28 Score=293.37 Aligned_cols=320 Identities=18% Similarity=0.228 Sum_probs=243.3
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCcccccc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~ 83 (1352)
+.++..-...|+|..|++|+..||.|-.|..|++|.+...+ ++.++... +...+-..+
T Consensus 371 ~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k-l~~lk~~~---------~l~~~d~~s------------ 428 (707)
T KOG0263|consen 371 MYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK-LKKLKDAS---------DLSNIDTES------------ 428 (707)
T ss_pred EEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhh-hccccchh---------hhccccccc------------
Confidence 45666666789999999999999999999999999987542 22222110 000000000
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEE-EEeeCCcccccccccc
Q 000685 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPKQEL 162 (1352)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~-wDl~t~~~~~i~~~~~ 162 (1352)
.|-.+.+-|-...... ....+| .++|.++.|+|+.+ +|++|+.|+.+| |.+.+..+ +....+
T Consensus 429 ---------ad~~~~~~D~~~~~~~----~~L~GH-~GPVyg~sFsPd~r-fLlScSED~svRLWsl~t~s~--~V~y~G 491 (707)
T KOG0263|consen 429 ---------ADVDVDMLDDDSSGTS----RTLYGH-SGPVYGCSFSPDRR-FLLSCSEDSSVRLWSLDTWSC--LVIYKG 491 (707)
T ss_pred ---------cchhhhhccccCCcee----EEeecC-CCceeeeeeccccc-ceeeccCCcceeeeeccccee--EEEecC
Confidence 1111222232222111 335566 99999999999997 999999999995 57776644 445679
Q ss_pred CCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEE
Q 000685 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1352)
Q Consensus 163 h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVW 242 (1352)
|..+|+++.| +|.|-|++|+|.|++-++|........+.+. ||-+.|.|+. |+|+.+++++||.|.+||+|
T Consensus 492 H~~PVwdV~F-----~P~GyYFatas~D~tArLWs~d~~~PlRifa-ghlsDV~cv~---FHPNs~Y~aTGSsD~tVRlW 562 (707)
T KOG0263|consen 492 HLAPVWDVQF-----APRGYYFATASHDQTARLWSTDHNKPLRIFA-GHLSDVDCVS---FHPNSNYVATGSSDRTVRLW 562 (707)
T ss_pred CCcceeeEEe-----cCCceEEEecCCCceeeeeecccCCchhhhc-ccccccceEE---ECCcccccccCCCCceEEEE
Confidence 9999999999 7789999999999999999999999988887 9999999998 89999999999999999999
Q ss_pred eCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEe
Q 000685 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPR 322 (1352)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svaf 322 (1352)
|+.+|..++. +.||.++|.+++|+| +|++|++|+.||.|++||+.+++.+.. +.+|++.|.++.|
T Consensus 563 Dv~~G~~VRi------F~GH~~~V~al~~Sp---~Gr~LaSg~ed~~I~iWDl~~~~~v~~------l~~Ht~ti~SlsF 627 (707)
T KOG0263|consen 563 DVSTGNSVRI------FTGHKGPVTALAFSP---CGRYLASGDEDGLIKIWDLANGSLVKQ------LKGHTGTIYSLSF 627 (707)
T ss_pred EcCCCcEEEE------ecCCCCceEEEEEcC---CCceEeecccCCcEEEEEcCCCcchhh------hhcccCceeEEEE
Confidence 9999998765 699999999999999 899999999999999999999998877 6899999999999
Q ss_pred CCCCCEE-EEecCCe--EEeccCCccccccc----C-----ccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEE
Q 000685 323 APNLDIL-TCVKDSH--IWAIEHPTYSALTR----P-----LCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATG 388 (1352)
Q Consensus 323 spdg~lL-S~s~Dg~--IWDi~t~~~~~~~~----~-----l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatG 388 (1352)
+.+|.+| ++|.|.. +||+.......... . .........+.++..... .|.++.|.. ....+++|
T Consensus 628 S~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~t-pv~~l~Ftr-rNl~L~~g 703 (707)
T KOG0263|consen 628 SRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNT-PVVGLHFTR-RNLLLAVG 703 (707)
T ss_pred ecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCc-eEEEEEEec-cceeEEec
Confidence 9999966 6788885 89998643320000 0 001122233445554444 889999987 34445544
No 21
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.96 E-value=2.6e-27 Score=268.19 Aligned_cols=325 Identities=19% Similarity=0.265 Sum_probs=259.9
Q ss_pred EEecCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCC--CcEEE--EEe----c-----cCccceEEec--cccceeE
Q 000685 5 KAFRPTNDKIVKIQLHPTHP-WLVTADASDHVSVWNWEH--RQVIY--ELK----A-----GGVDQRRLVG--AKLEKLA 68 (1352)
Q Consensus 5 ~~L~gHs~~V~~lafSPdg~-~LaTgs~DG~VrVWDl~t--g~~i~--t~~----~-----~~~~~i~~vs--~dg~~La 68 (1352)
+.++ |...|.+.+|+|-.. .|++|+.|-+.++|++.. ..+.. .++ . .....+.+++ .+|..|+
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La 251 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA 251 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence 4455 999999999999877 999999999999999864 11111 111 0 0113344554 4566666
Q ss_pred ecccccCCCccccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EE
Q 000685 69 EGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FL 147 (1352)
Q Consensus 69 sgs~d~~g~~l~~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~w 147 (1352)
+|. .||.+|+|+...... ...+.|..+|.++.|+.+|. +|++++.|+++ +|
T Consensus 252 tG~---------------------~~G~~riw~~~G~l~------~tl~~HkgPI~slKWnk~G~-yilS~~vD~ttilw 303 (524)
T KOG0273|consen 252 TGS---------------------EDGEARIWNKDGNLI------STLGQHKGPIFSLKWNKKGT-YILSGGVDGTTILW 303 (524)
T ss_pred Eee---------------------cCcEEEEEecCchhh------hhhhccCCceEEEEEcCCCC-EEEeccCCccEEEE
Confidence 654 899999999887633 23445599999999999998 77888877766 77
Q ss_pred EeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCC
Q 000685 148 DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGE 227 (1352)
Q Consensus 148 Dl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg 227 (1352)
|..++.... .+..|..+-..|.|. +..-+++++.||.|+++.+...+++.++. ||.+.|.++. +.|.+
T Consensus 304 d~~~g~~~q--~f~~~s~~~lDVdW~------~~~~F~ts~td~~i~V~kv~~~~P~~t~~-GH~g~V~alk---~n~tg 371 (524)
T KOG0273|consen 304 DAHTGTVKQ--QFEFHSAPALDVDWQ------SNDEFATSSTDGCIHVCKVGEDRPVKTFI-GHHGEVNALK---WNPTG 371 (524)
T ss_pred eccCceEEE--eeeeccCCccceEEe------cCceEeecCCCceEEEEEecCCCcceeee-cccCceEEEE---ECCCC
Confidence 998886543 467787777889994 46679999999999999999999999998 8999999998 68899
Q ss_pred CEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccC------CCCCEEEEEECCCcEEEEECCCCeEE
Q 000685 228 ALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVM------GGSPQLITIGADKTLAIWDTVSFKEL 301 (1352)
Q Consensus 228 ~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~------~dg~~LaSgs~DgtV~IWDl~tg~~l 301 (1352)
.+|+|+|.|++++||....+.+... |.+|...|+.+.|+|.. ..+..|++++.|++|++||+..+.++
T Consensus 372 ~LLaS~SdD~TlkiWs~~~~~~~~~------l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i 445 (524)
T KOG0273|consen 372 SLLASCSDDGTLKIWSMGQSNSVHD------LQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI 445 (524)
T ss_pred ceEEEecCCCeeEeeecCCCcchhh------hhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee
Confidence 9999999999999999988877665 79999999999999952 23578999999999999999999999
Q ss_pred EEecCCCcccccCCceeEEEeCCCCCEE-EEecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEe
Q 000685 302 RRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAH 378 (1352)
Q Consensus 302 ~~~~~~~~l~~hs~~V~svafspdg~lL-S~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~s 378 (1352)
+. +..|+.+|++++|+|+|+++ +|+.||. ||++.++.. ...+.+. ..|..+.|+
T Consensus 446 ~~------f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l---------------~~s~~~~--~~Ifel~Wn 502 (524)
T KOG0273|consen 446 HT------LMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKL---------------VKSYQGT--GGIFELCWN 502 (524)
T ss_pred Ee------eccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhe---------------eEeecCC--CeEEEEEEc
Confidence 98 58999999999999999977 6889985 899987632 3333333 269999999
Q ss_pred cCCCcEEEEEECCCeEEEEecCC
Q 000685 379 SLQPHLVATGTNVGVIISEFDPR 401 (1352)
Q Consensus 379 p~~~~lLatGs~DG~IlriWd~~ 401 (1352)
- .+.+|..+-.||.+ ++.|+|
T Consensus 503 ~-~G~kl~~~~sd~~v-cvldlr 523 (524)
T KOG0273|consen 503 A-AGDKLGACASDGSV-CVLDLR 523 (524)
T ss_pred C-CCCEEEEEecCCCc-eEEEec
Confidence 9 56888888888887 677765
No 22
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=1.1e-27 Score=252.77 Aligned_cols=273 Identities=18% Similarity=0.317 Sum_probs=236.1
Q ss_pred cCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEEEeeCCccccccccccCCCCeEEEEE
Q 000685 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEF 172 (1352)
Q Consensus 93 ~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl~t~~~~~i~~~~~h~~~V~~vaf 172 (1352)
+|.+||+|...+|.|. ..+.|.++.|+.+...|+++ .|++++.-++-.+|+++.+...+.++..|...|+.+.|
T Consensus 18 YDhTIRfWqa~tG~C~-----rTiqh~dsqVNrLeiTpdk~-~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF 91 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICS-----RTIQHPDSQVNRLEITPDKK-DLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGF 91 (311)
T ss_pred CcceeeeeehhcCeEE-----EEEecCccceeeEEEcCCcc-hhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEE
Confidence 7999999999999996 45566688999999999997 88988888877789999887778889999999999999
Q ss_pred eeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccce
Q 000685 173 LSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRE 252 (1352)
Q Consensus 173 ~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~ 252 (1352)
..+|+++++|++||+++|||++...+.+.+ .|..+|+++. .+|+...|++|..+|.|++||+....+...
T Consensus 92 -----~~dgrWMyTgseDgt~kIWdlR~~~~qR~~--~~~spVn~vv---lhpnQteLis~dqsg~irvWDl~~~~c~~~ 161 (311)
T KOG0315|consen 92 -----QCDGRWMYTGSEDGTVKIWDLRSLSCQRNY--QHNSPVNTVV---LHPNQTELISGDQSGNIRVWDLGENSCTHE 161 (311)
T ss_pred -----eecCeEEEecCCCceEEEEeccCcccchhc--cCCCCcceEE---ecCCcceEEeecCCCcEEEEEccCCccccc
Confidence 569999999999999999999997776665 5889999997 899999999999999999999998877766
Q ss_pred ecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEE-EE
Q 000685 253 LVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TC 331 (1352)
Q Consensus 253 ~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lL-S~ 331 (1352)
+. ..-...|.++...| |+.+++.+...|+..+|++-+......+.++.+++.|+.-+..+.+|||+++| ++
T Consensus 162 li-----Pe~~~~i~sl~v~~---dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ 233 (311)
T KOG0315|consen 162 LI-----PEDDTSIQSLTVMP---DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATC 233 (311)
T ss_pred cC-----CCCCcceeeEEEcC---CCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEee
Confidence 43 33346799999999 89999999999999999999888778888889999999999999999999977 68
Q ss_pred ecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCCCCCc
Q 000685 332 VKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAV 406 (1352)
Q Consensus 332 s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~i 406 (1352)
|.|.+ ||+.++. .+....+.+|.. .+|..+|+. ++.+|++|+.|+.+ |+|++.....+
T Consensus 234 ssdktv~iwn~~~~--------------~kle~~l~gh~r-WvWdc~FS~-dg~YlvTassd~~~-rlW~~~~~k~v 293 (311)
T KOG0315|consen 234 SSDKTVKIWNTDDF--------------FKLELVLTGHQR-WVWDCAFSA-DGEYLVTASSDHTA-RLWDLSAGKEV 293 (311)
T ss_pred cCCceEEEEecCCc--------------eeeEEEeecCCc-eEEeeeecc-CccEEEecCCCCce-eecccccCcee
Confidence 88886 8998753 122345667776 999999999 78889999999987 99998865433
No 23
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=9.9e-29 Score=275.45 Aligned_cols=277 Identities=18% Similarity=0.253 Sum_probs=229.5
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCCceEEE
Q 000685 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQV 90 (1352)
Q Consensus 11 s~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~sV 90 (1352)
...|..|.|.|+|++|+||+..|.+.+|+..+ |.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~------fn---------------------------------------- 129 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS------FN---------------------------------------- 129 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCce------ee----------------------------------------
Confidence 35788999999999999999999999999632 11
Q ss_pred EEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccccccC-CCCeE
Q 000685 91 NFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELD-NKSLV 168 (1352)
Q Consensus 91 aF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~h-~~~V~ 168 (1352)
.......|++.|+++.|++++. ++++|..++.| .|+..-.. +.....| ...|+
T Consensus 130 ---------------------FEtilQaHDs~Vr~m~ws~~g~-wmiSgD~gG~iKyWqpnmnn---Vk~~~ahh~eaIR 184 (464)
T KOG0284|consen 130 ---------------------FETILQAHDSPVRTMKWSHNGT-WMISGDKGGMIKYWQPNMNN---VKIIQAHHAEAIR 184 (464)
T ss_pred ---------------------HHHHhhhhcccceeEEEccCCC-EEEEcCCCceEEecccchhh---hHHhhHhhhhhhh
Confidence 0223334588999999999997 99999999999 45544332 3334444 58999
Q ss_pred EEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCC
Q 000685 169 CMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQ 248 (1352)
Q Consensus 169 ~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~ 248 (1352)
|++| ||+...+++||+||+|+|||....+.-..+. ||.-.|.|++| +|...+|+|||.|+.|++||.+++.
T Consensus 185 dlaf-----SpnDskF~t~SdDg~ikiWdf~~~kee~vL~-GHgwdVksvdW---HP~kgLiasgskDnlVKlWDprSg~ 255 (464)
T KOG0284|consen 185 DLAF-----SPNDSKFLTCSDDGTIKIWDFRMPKEERVLR-GHGWDVKSVDW---HPTKGLIASGSKDNLVKLWDPRSGS 255 (464)
T ss_pred eecc-----CCCCceeEEecCCCeEEEEeccCCchhheec-cCCCCcceecc---CCccceeEEccCCceeEeecCCCcc
Confidence 9999 7788899999999999999999887777776 99999999995 7888899999999999999999999
Q ss_pred ccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCC-
Q 000685 249 DSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD- 327 (1352)
Q Consensus 249 ~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~- 327 (1352)
|+.+ +.+|+..|..+.|++ ++++|+|+|.|..++++|+++.+.+++ +++|...|+++.|+|-..
T Consensus 256 cl~t------lh~HKntVl~~~f~~---n~N~Llt~skD~~~kv~DiR~mkEl~~------~r~Hkkdv~~~~WhP~~~~ 320 (464)
T KOG0284|consen 256 CLAT------LHGHKNTVLAVKFNP---NGNWLLTGSKDQSCKVFDIRTMKELFT------YRGHKKDVTSLTWHPLNES 320 (464)
T ss_pred hhhh------hhhccceEEEEEEcC---CCCeeEEccCCceEEEEehhHhHHHHH------hhcchhhheeecccccccc
Confidence 8765 799999999999999 789999999999999999998887777 689999999999999755
Q ss_pred EE-EEecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEec
Q 000685 328 IL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1352)
Q Consensus 328 lL-S~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd 399 (1352)
++ ++|.||. .|.+... .++..+...+...||+++||| -+++|++|++|..+ |.|.
T Consensus 321 lftsgg~Dgsvvh~~v~~~---------------~p~~~i~~AHd~~iwsl~~hP-lGhil~tgsnd~t~-rfw~ 378 (464)
T KOG0284|consen 321 LFTSGGSDGSVVHWVVGLE---------------EPLGEIPPAHDGEIWSLAYHP-LGHILATGSNDRTV-RFWT 378 (464)
T ss_pred ceeeccCCCceEEEecccc---------------ccccCCCcccccceeeeeccc-cceeEeecCCCcce-eeec
Confidence 44 7899996 4766521 223334333444899999999 58999999999997 7895
No 24
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=5.1e-27 Score=259.29 Aligned_cols=335 Identities=16% Similarity=0.147 Sum_probs=275.5
Q ss_pred eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec--cccceeEecccccCCCccc
Q 000685 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTE 80 (1352)
Q Consensus 3 ~l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~ 80 (1352)
.+.+|..|++.|.+++.||+.++++||+.|..-.||+..+|..+.++. +|.+.|.++. .++.+|++|+
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~elt-gHKDSVt~~~FshdgtlLATGd--------- 125 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELT-GHKDSVTCCSFSHDGTLLATGD--------- 125 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEec-CCCCceEEEEEccCceEEEecC---------
Confidence 378999999999999999999999999999999999999999888776 7778888877 9999999987
Q ss_pred cccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccc
Q 000685 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPK 159 (1352)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~ 159 (1352)
.+|.|+||+..++.... ...+. -..+.=+.|+|.+. +|+.|+.||.+ .|.+.+.. ..+.
T Consensus 126 ------------msG~v~v~~~stg~~~~----~~~~e-~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~--~~kv 185 (399)
T KOG0296|consen 126 ------------MSGKVLVFKVSTGGEQW----KLDQE-VEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQA--LCKV 185 (399)
T ss_pred ------------CCccEEEEEcccCceEE----Eeecc-cCceEEEEeccccc-EEEeecCCCcEEEEECCCcc--eeeE
Confidence 68999999999986542 11122 34566789999886 99999999988 66666642 3445
Q ss_pred cccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcE
Q 000685 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1352)
Q Consensus 160 ~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtV 239 (1352)
+.+|+.+++|-.| .|+|+.+++|..||+|++||+.+++++.++.........|+. ++..+..+++|+.++.+
T Consensus 186 ~~Gh~~~ct~G~f-----~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~---~~~~~~~~~~g~~e~~~ 257 (399)
T KOG0296|consen 186 MSGHNSPCTCGEF-----IPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCIS---LNLAGSTLTKGNSEGVA 257 (399)
T ss_pred ecCCCCCcccccc-----cCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccc---cccccceeEeccCCccE
Confidence 7889999999999 678999999999999999999999999888644455677776 78889999999999999
Q ss_pred EEEeCCCCCccceecc--cccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCce
Q 000685 240 ILWSADHGQDSRELVP--KLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVAS 317 (1352)
Q Consensus 240 rVWDl~tg~~~~~~~~--~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V 317 (1352)
++-+..+|+.+....+ ......|...+.|+.+.|....-++.++|+-||+|.|||+...+.-+. ..|...|
T Consensus 258 ~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~-------c~he~~V 330 (399)
T KOG0296|consen 258 CGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHI-------CEHEDGV 330 (399)
T ss_pred EEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhee-------ccCCCce
Confidence 9999988886544321 112345677777777777544667899999999999999987665443 5688899
Q ss_pred eEEEeCCCCCEEEEecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEE
Q 000685 318 WCHPRAPNLDILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVII 395 (1352)
Q Consensus 318 ~svafspdg~lLS~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~Il 395 (1352)
..+.|-++..+++++.||. +||.+++. ...++.+|.. .|.+++.+| +.++++|+|+|+..
T Consensus 331 ~~l~w~~t~~l~t~c~~g~v~~wDaRtG~---------------l~~~y~GH~~-~Il~f~ls~-~~~~vvT~s~D~~a- 392 (399)
T KOG0296|consen 331 TKLKWLNTDYLLTACANGKVRQWDARTGQ---------------LKFTYTGHQM-GILDFALSP-QKRLVVTVSDDNTA- 392 (399)
T ss_pred EEEEEcCcchheeeccCceEEeeeccccc---------------eEEEEecCch-heeEEEEcC-CCcEEEEecCCCeE-
Confidence 9999999666889999996 79999873 4678889988 999999999 78899999999996
Q ss_pred EEecC
Q 000685 396 SEFDP 400 (1352)
Q Consensus 396 riWd~ 400 (1352)
++|+.
T Consensus 393 ~VF~v 397 (399)
T KOG0296|consen 393 LVFEV 397 (399)
T ss_pred EEEec
Confidence 68864
No 25
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=4.2e-25 Score=252.89 Aligned_cols=433 Identities=15% Similarity=0.160 Sum_probs=285.1
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCcEEEEEeccCccceEEec--c-ccceeEecccccCCC
Q 000685 5 KAFRPTNDKIVKIQLHPTHPWLVTADAS----DHVSVWNWEHRQVIYELKAGGVDQRRLVG--A-KLEKLAEGELEHKGK 77 (1352)
Q Consensus 5 ~~L~gHs~~V~~lafSPdg~~LaTgs~D----G~VrVWDl~tg~~i~t~~~~~~~~i~~vs--~-dg~~Lasgs~d~~g~ 77 (1352)
.+|+.-.++|..++|+.++++|+..+.. |.+.+|| +|..+.++. +|...+..+. | .--++++++
T Consensus 97 nef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D--SG~SvGei~-GhSr~ins~~~KpsRPfRi~T~s------ 167 (603)
T KOG0318|consen 97 NEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD--SGNSVGEIT-GHSRRINSVDFKPSRPFRIATGS------ 167 (603)
T ss_pred eeeeecccccccceeCCCCcEEEEEecCccceeEEEEec--CCCccceee-ccceeEeeeeccCCCceEEEecc------
Confidence 3566667899999999999988877543 4455555 777888887 5555666555 2 222455555
Q ss_pred ccccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCcccc
Q 000685 78 PTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRD 156 (1352)
Q Consensus 78 ~l~~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~ 156 (1352)
.|+++.+|+=..-+. .....+|...|+|+.|+|||. ++++.+.|+.+ ++|-.+++...
T Consensus 168 ---------------dDn~v~ffeGPPFKF-----k~s~r~HskFV~~VRysPDG~-~Fat~gsDgki~iyDGktge~vg 226 (603)
T KOG0318|consen 168 ---------------DDNTVAFFEGPPFKF-----KSSFREHSKFVNCVRYSPDGS-RFATAGSDGKIYIYDGKTGEKVG 226 (603)
T ss_pred ---------------CCCeEEEeeCCCeee-----eecccccccceeeEEECCCCC-eEEEecCCccEEEEcCCCccEEE
Confidence 455666554332222 233445588999999999998 77777777666 55988886533
Q ss_pred cc-ccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCC---CCeeEEEEeeeCCCCCEEEE
Q 000685 157 IP-KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHK---GSISCLMTFMASSGEALLVS 232 (1352)
Q Consensus 157 i~-~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~---~~V~slawf~~s~dg~~LaS 232 (1352)
.. ....|.+.|..+.| +||+..+++++.|.+++|||+.+.++++++.-+.+ ..|-|+ | ....|++
T Consensus 227 ~l~~~~aHkGsIfalsW-----sPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~l-W-----qkd~lIt 295 (603)
T KOG0318|consen 227 ELEDSDAHKGSIFALSW-----SPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCL-W-----QKDHLIT 295 (603)
T ss_pred EecCCCCccccEEEEEE-----CCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEE-E-----eCCeEEE
Confidence 21 13589999999999 88999999999999999999999999998863433 456666 5 3678999
Q ss_pred EeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccc
Q 000685 233 GGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLAC 312 (1352)
Q Consensus 233 gS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~ 312 (1352)
-+.+|+|.+++.......+ ++.||...|+++..++ ++.+|.+|+.||.|.-||..+|..-+.. -.+
T Consensus 296 VSl~G~in~ln~~d~~~~~------~i~GHnK~ITaLtv~~---d~~~i~SgsyDG~I~~W~~~~g~~~~~~-----g~~ 361 (603)
T KOG0318|consen 296 VSLSGTINYLNPSDPSVLK------VISGHNKSITALTVSP---DGKTIYSGSYDGHINSWDSGSGTSDRLA-----GKG 361 (603)
T ss_pred EEcCcEEEEecccCCChhh------eecccccceeEEEEcC---CCCEEEeeccCceEEEEecCCccccccc-----ccc
Confidence 9999999999998877433 4799999999999999 7899999999999999999998764431 268
Q ss_pred cCCceeEEEeCCCCCEEEEecCCeEEeccC--CcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEEC
Q 000685 313 HSVASWCHPRAPNLDILTCVKDSHIWAIEH--PTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTN 390 (1352)
Q Consensus 313 hs~~V~svafspdg~lLS~s~Dg~IWDi~t--~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~ 390 (1352)
|++.|.+++.+..+.++++|.|.+||-+.- ..+.. ...+.... .-.+++..+ ++.+++..+.
T Consensus 362 h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~-------------~~~~~lg~--QP~~lav~~-d~~~avv~~~ 425 (603)
T KOG0318|consen 362 HTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTK-------------SEVVKLGS--QPKGLAVLS-DGGTAVVACI 425 (603)
T ss_pred ccceEEEEeecCCCcEEEEecCCeEEEEecccCcccc-------------cceeecCC--CceeEEEcC-CCCEEEEEec
Confidence 999999999999899999999998776532 11100 00011111 122566666 3444555555
Q ss_pred CCeEEEEecCCCCCCccccCC---CCCCCCceEEEEecCeEEEEEeeeccCCCCCCCCCcccccCCcccCCCchhhhhhh
Q 000685 391 VGVIISEFDPRSLPAVAPLPT---PSGSRDHSAVYIVERELKLVNFQLSSAANPSLGNNGSLSETGRLKGDLPDALQIKQ 467 (1352)
Q Consensus 391 DG~IlriWd~~~~p~i~~l~~---~s~s~~~~~~~~~~~~lkl~~fq~~~~~n~~~g~~~~~s~~G~~~~~~~~~l~v~~ 467 (1352)
++.++ +=|.+....+..... ..-+.+...+.+-..+-++.-|.++.... . ++.
T Consensus 426 ~~iv~-l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l---------~----------ee~---- 481 (603)
T KOG0318|consen 426 SDIVL-LQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL---------K----------EEA---- 481 (603)
T ss_pred CcEEE-EecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcc---------c----------cee----
Confidence 55543 222221111100000 00111222223322222333333322100 0 000
Q ss_pred ccccccccCCCCCccEEEEcCCCCEEEEEECCCCcEEEEEeCCceE------eeccceeEEEeccCCCeEEEEeccCCC
Q 000685 468 IKKHISTPVPHDSYSILSVSSSGKYLAVVWPDIPYFSVYKVSDWSI------VDSGSARLLAWDTCRDRFAILESALTP 540 (1352)
Q Consensus 468 ~~r~i~t~~~~e~~s~l~~SpdGrylavv~~~~g~y~Iy~i~~~~~------i~~G~~~~~aWs~~~~~fAvl~~~~~~ 540 (1352)
.........+.+++||||.|| ++.+-+++..+|++.+... ..+++.+.++|+|++.++|- .+++.
T Consensus 482 -----~~~~h~a~iT~vaySpd~~yl-a~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vAT--GSlDt 552 (603)
T KOG0318|consen 482 -----KLLEHRAAITDVAYSPDGAYL-AAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVAT--GSLDT 552 (603)
T ss_pred -----eeecccCCceEEEECCCCcEE-EEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEe--ccccc
Confidence 000011223589999999999 5568899999999865433 33788999999998876553 34443
No 26
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=1.6e-28 Score=267.82 Aligned_cols=277 Identities=20% Similarity=0.346 Sum_probs=233.8
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCCceEE
Q 000685 10 TNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQ 89 (1352)
Q Consensus 10 Hs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~s 89 (1352)
.+.+|.|+.+. ...+++|..|++|+|||..+..+++.+. +|.+.+.++.-+.+.|++|+
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~-GHtGSVLCLqyd~rviisGS------------------ 254 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILT-GHTGSVLCLQYDERVIVSGS------------------ 254 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhh-cCCCcEEeeeccceEEEecC------------------
Confidence 45789999986 5579999999999999999988888887 78899999998888999987
Q ss_pred EEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCcc-ccccccccCCCCe
Q 000685 90 VNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRG-RDIPKQELDNKSL 167 (1352)
Q Consensus 90 VaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~-~~i~~~~~h~~~V 167 (1352)
.|.+|++||+++++++ .+..+| ...|..+.|+. | ++++++.|..+ +||+.+..- .......+|...|
T Consensus 255 ---SDsTvrvWDv~tge~l----~tlihH-ceaVLhlrf~n-g--~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaV 323 (499)
T KOG0281|consen 255 ---SDSTVRVWDVNTGEPL----NTLIHH-CEAVLHLRFSN-G--YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 323 (499)
T ss_pred ---CCceEEEEeccCCchh----hHHhhh-cceeEEEEEeC-C--EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhe
Confidence 6889999999999987 455555 78899999985 3 89999999999 778876542 1223467899999
Q ss_pred EEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCC
Q 000685 168 VCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHG 247 (1352)
Q Consensus 168 ~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg 247 (1352)
+.+.| +.++|+++|.|.+|++|++.++++++++. ||...|.|+. + .+++++|||.|.+||+||+..|
T Consensus 324 NvVdf-------d~kyIVsASgDRTikvW~~st~efvRtl~-gHkRGIAClQ-Y----r~rlvVSGSSDntIRlwdi~~G 390 (499)
T KOG0281|consen 324 NVVDF-------DDKYIVSASGDRTIKVWSTSTCEFVRTLN-GHKRGIACLQ-Y----RDRLVVSGSSDNTIRLWDIECG 390 (499)
T ss_pred eeecc-------ccceEEEecCCceEEEEeccceeeehhhh-cccccceehh-c----cCeEEEecCCCceEEEEecccc
Confidence 99999 67899999999999999999999999997 9999999997 2 7899999999999999999999
Q ss_pred CccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEe---cCCCcccccCCceeEEEeCC
Q 000685 248 QDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRI---KPVPKLACHSVASWCHPRAP 324 (1352)
Q Consensus 248 ~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~---~~~~~l~~hs~~V~svafsp 324 (1352)
.+++. ++||+.-|.++.|. .+.|++|+.||+|+|||+..+...+.. -+...+..|++.|..+.|..
T Consensus 391 ~cLRv------LeGHEeLvRciRFd-----~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~ 459 (499)
T KOG0281|consen 391 ACLRV------LEGHEELVRCIRFD-----NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE 459 (499)
T ss_pred HHHHH------HhchHHhhhheeec-----CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc
Confidence 98875 79999999999995 579999999999999999876532211 12234678999999999964
Q ss_pred CCCEEEEecCCe--EEeccCC
Q 000685 325 NLDILTCVKDSH--IWAIEHP 343 (1352)
Q Consensus 325 dg~lLS~s~Dg~--IWDi~t~ 343 (1352)
-++++++.|.+ |||+..+
T Consensus 460 -fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 460 -FQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred -eEEEeccCCCeEEEEEcCCC
Confidence 34788888886 7999865
No 27
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=3.3e-26 Score=254.88 Aligned_cols=284 Identities=21% Similarity=0.336 Sum_probs=230.8
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCcccccc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~ 83 (1352)
+++|++|.+.|++++|+|++++|++++.||.|++||+.+++....+..+
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~------------------------------- 50 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGH------------------------------- 50 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecC-------------------------------
Confidence 4678899999999999999999999999999999999876644444311
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCcccccccccc
Q 000685 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1352)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~ 162 (1352)
...+..+.|+++++ ++++++.++.+ +||..+++. +.....
T Consensus 51 ------------------------------------~~~i~~~~~~~~~~-~l~~~~~~~~i~i~~~~~~~~--~~~~~~ 91 (289)
T cd00200 51 ------------------------------------TGPVRDVAASADGT-YLASGSSDKTIRLWDLETGEC--VRTLTG 91 (289)
T ss_pred ------------------------------------CcceeEEEECCCCC-EEEEEcCCCeEEEEEcCcccc--eEEEec
Confidence 33456778889886 77888877777 668876532 334567
Q ss_pred CCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEE
Q 000685 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1352)
Q Consensus 163 h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVW 242 (1352)
|...|.++.| ++++.++++++.||.|++||+.+++....+. .|...+.++. +++++.++++++.||.|++|
T Consensus 92 ~~~~i~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~~---~~~~~~~l~~~~~~~~i~i~ 162 (289)
T cd00200 92 HTSYVSSVAF-----SPDGRILSSSSRDKTIKVWDVETGKCLTTLR-GHTDWVNSVA---FSPDGTFVASSSQDGTIKLW 162 (289)
T ss_pred cCCcEEEEEE-----cCCCCEEEEecCCCeEEEEECCCcEEEEEec-cCCCcEEEEE---EcCcCCEEEEEcCCCcEEEE
Confidence 7789999999 5678888888889999999999888888886 8999999997 67888899988889999999
Q ss_pred eCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEe
Q 000685 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPR 322 (1352)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svaf 322 (1352)
|+++++.... +..|...|.++.|+| ++..+++++.|+.|++||+.+++.+.. +..|...+.++.|
T Consensus 163 d~~~~~~~~~------~~~~~~~i~~~~~~~---~~~~l~~~~~~~~i~i~d~~~~~~~~~------~~~~~~~i~~~~~ 227 (289)
T cd00200 163 DLRTGKCVAT------LTGHTGEVNSVAFSP---DGEKLLSSSSDGTIKLWDLSTGKCLGT------LRGHENGVNSVAF 227 (289)
T ss_pred Ecccccccee------EecCccccceEEECC---CcCEEEEecCCCcEEEEECCCCceecc------hhhcCCceEEEEE
Confidence 9997765544 567888999999999 778999999999999999998877766 4578889999999
Q ss_pred CCCCCEEEEe-cCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEec
Q 000685 323 APNLDILTCV-KDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1352)
Q Consensus 323 spdg~lLS~s-~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd 399 (1352)
+|++.+++++ .|+. +|++.+.. ....+..|.. .|.++.|++ ++.++++++.||.+ ++|+
T Consensus 228 ~~~~~~~~~~~~~~~i~i~~~~~~~---------------~~~~~~~~~~-~i~~~~~~~-~~~~l~~~~~d~~i-~iw~ 289 (289)
T cd00200 228 SPDGYLLASGSEDGTIRVWDLRTGE---------------CVQTLSGHTN-SVTSLAWSP-DGKRLASGSADGTI-RIWD 289 (289)
T ss_pred cCCCcEEEEEcCCCcEEEEEcCCce---------------eEEEccccCC-cEEEEEECC-CCCEEEEecCCCeE-EecC
Confidence 9998877554 4885 79987532 2334445555 899999999 57789999999997 7985
No 28
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.96 E-value=3.3e-27 Score=253.19 Aligned_cols=251 Identities=16% Similarity=0.269 Sum_probs=205.8
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCcccccc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~ 83 (1352)
++.|.||+..|..++.++||++.++++.|+++|+||+.+|+..+.|..|
T Consensus 56 ~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH------------------------------- 104 (315)
T KOG0279|consen 56 VRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGH------------------------------- 104 (315)
T ss_pred eeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEec-------------------------------
Confidence 6889999999999999999999999999999999999998887777633
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCcccccccccc
Q 000685 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1352)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~ 162 (1352)
...|.+++|++|.+ .+++|+.|+++ .||.... ++.......
T Consensus 105 ------------------------------------~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g~-ck~t~~~~~ 146 (315)
T KOG0279|consen 105 ------------------------------------TKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLGV-CKYTIHEDS 146 (315)
T ss_pred ------------------------------------CCceEEEEecCCCc-eeecCCCcceeeeeeeccc-EEEEEecCC
Confidence 45588899999997 89999999999 5576654 322222233
Q ss_pred CCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEE
Q 000685 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1352)
Q Consensus 163 h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVW 242 (1352)
+.++|.|+.|+| +++..+|++++.|++|++||+++.+....+. ||+++++.+. ++|||.++++|+.||.+.+|
T Consensus 147 ~~~WVscvrfsP---~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~-gh~~~v~t~~---vSpDGslcasGgkdg~~~Lw 219 (315)
T KOG0279|consen 147 HREWVSCVRFSP---NESNPIIVSASWDKTVKVWNLRNCQLRTTFI-GHSGYVNTVT---VSPDGSLCASGGKDGEAMLW 219 (315)
T ss_pred CcCcEEEEEEcC---CCCCcEEEEccCCceEEEEccCCcchhhccc-cccccEEEEE---ECCCCCEEecCCCCceEEEE
Confidence 388999999977 4458899999999999999999999888887 9999999997 89999999999999999999
Q ss_pred eCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCccc---ccCCceeE
Q 000685 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLA---CHSVASWC 319 (1352)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~---~hs~~V~s 319 (1352)
|++.++.+.. .+|...|++++|+| .++.++...+..|+|||+.++.++..+++...-. .......+
T Consensus 220 dL~~~k~lys-------l~a~~~v~sl~fsp----nrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~cls 288 (315)
T KOG0279|consen 220 DLNEGKNLYS-------LEAFDIVNSLCFSP----NRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLS 288 (315)
T ss_pred EccCCceeEe-------ccCCCeEeeEEecC----CceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEE
Confidence 9999987654 56889999999999 4677777778889999999999887765432111 11223448
Q ss_pred EEeCCCCCEE-EEecCC--eEEecc
Q 000685 320 HPRAPNLDIL-TCVKDS--HIWAIE 341 (1352)
Q Consensus 320 vafspdg~lL-S~s~Dg--~IWDi~ 341 (1352)
++|++||..| ++-.|+ ++|.+.
T Consensus 289 laws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 289 LAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEcCCCcEEEeeecCCcEEEEEee
Confidence 8999999955 666777 478765
No 29
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1.1e-26 Score=274.92 Aligned_cols=289 Identities=21% Similarity=0.348 Sum_probs=248.7
Q ss_pred eEEecCCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec--cccceeEecccccCCCccc
Q 000685 4 LKAFRPTNDKIVKIQLH-PTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTE 80 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafS-Pdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~ 80 (1352)
.+.+-|.++.|..|.|- |+.++||.++..+.+|+++..+..+. +-.+|.+.+.++. .+|..|++++
T Consensus 316 ~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~--ii~GH~e~vlSL~~~~~g~llat~s--------- 384 (775)
T KOG0319|consen 316 VKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ--IIPGHTEAVLSLDVWSSGDLLATGS--------- 384 (775)
T ss_pred ehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE--EEeCchhheeeeeecccCcEEEEec---------
Confidence 45678899999999975 56789999999999999998887766 5558889988888 7777899887
Q ss_pred cccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCcc-----
Q 000685 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRG----- 154 (1352)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~----- 154 (1352)
.|.++++|.++.+.+.........+| .+.|.+++++..+..+|++++.|+++ +|++...+.
T Consensus 385 ------------KD~svilWr~~~~~~~~~~~a~~~gH-~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~ 451 (775)
T KOG0319|consen 385 ------------KDKSVILWRLNNNCSKSLCVAQANGH-TNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPI 451 (775)
T ss_pred ------------CCceEEEEEecCCcchhhhhhhhccc-ccccceeeecccCccEEEEecCCceEEEecCCCcccccccc
Confidence 78999999996665543334445555 88999999999888899999999999 676654111
Q ss_pred --ccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEE
Q 000685 155 --RDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVS 232 (1352)
Q Consensus 155 --~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaS 232 (1352)
....+...|...|+|+++ +|+..+|+|||.|.+.+||++...+...++. ||+..|.|+. |++..+.++|
T Consensus 452 ~~~~~~t~~aHdKdIN~Vai-----a~ndkLiAT~SqDktaKiW~le~~~l~~vLs-GH~RGvw~V~---Fs~~dq~laT 522 (775)
T KOG0319|consen 452 VLTCRYTERAHDKDINCVAI-----APNDKLIATGSQDKTAKIWDLEQLRLLGVLS-GHTRGVWCVS---FSKNDQLLAT 522 (775)
T ss_pred eehhhHHHHhhcccccceEe-----cCCCceEEecccccceeeecccCceEEEEee-CCccceEEEE---eccccceeEe
Confidence 111234678999999999 7899999999999999999999999999987 9999999998 8999999999
Q ss_pred EeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccc
Q 000685 233 GGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLAC 312 (1352)
Q Consensus 233 gS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~ 312 (1352)
+|.|++|+||.+.+..|+++ +.||...|..+.|-. ++..|+|++.||.|++|++.++.|+++ +..
T Consensus 523 ~SgD~TvKIW~is~fSClkT------~eGH~~aVlra~F~~---~~~qliS~~adGliKlWnikt~eC~~t------lD~ 587 (775)
T KOG0319|consen 523 CSGDKTVKIWSISTFSCLKT------FEGHTSAVLRASFIR---NGKQLISAGADGLIKLWNIKTNECEMT------LDA 587 (775)
T ss_pred ccCCceEEEEEeccceeeee------ecCccceeEeeeeee---CCcEEEeccCCCcEEEEeccchhhhhh------hhh
Confidence 99999999999999988876 799999999999998 799999999999999999999999988 789
Q ss_pred cCCceeEEEeCCCCCE-EEEecCCe--EEec
Q 000685 313 HSVASWCHPRAPNLDI-LTCVKDSH--IWAI 340 (1352)
Q Consensus 313 hs~~V~svafspdg~l-LS~s~Dg~--IWDi 340 (1352)
|.+.||++..++.+.. ++|+.||+ +|.=
T Consensus 588 H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 588 HNDRVWALSVSPLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred ccceeEEEeecCccceeEecCCCeEEEEeec
Confidence 9999999999999884 48999998 5753
No 30
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=8.4e-26 Score=276.47 Aligned_cols=288 Identities=23% Similarity=0.361 Sum_probs=234.5
Q ss_pred eEEecCC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE--EEEEeccCccceEEeccccceeEecccccCCCccc
Q 000685 4 LKAFRPT-NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQV--IYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTE 80 (1352)
Q Consensus 4 l~~L~gH-s~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~--i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~ 80 (1352)
...+.+| ...|+++.|+++|.+|++++.|+.+++|+..+++. +.++
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l------------------------------- 199 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL------------------------------- 199 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc-------------------------------
Confidence 3455555 78999999999999999999999999999865442 1111
Q ss_pred cccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccc
Q 000685 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPK 159 (1352)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~ 159 (1352)
.+ |...|++++|+|+++ ++++++.|+.+ +||... ....+.+
T Consensus 200 -----------------------------------~~-h~~~v~~~~fs~d~~-~l~s~s~D~tiriwd~~~-~~~~~~~ 241 (456)
T KOG0266|consen 200 -----------------------------------SG-HTRGVSDVAFSPDGS-YLLSGSDDKTLRIWDLKD-DGRNLKT 241 (456)
T ss_pred -----------------------------------cc-cccceeeeEECCCCc-EEEEecCCceEEEeeccC-CCeEEEE
Confidence 22 266799999999998 99999999999 558833 2345667
Q ss_pred cccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcE
Q 000685 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1352)
Q Consensus 160 ~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtV 239 (1352)
+.+|...|+|++| +|+++++++|+.|++|+|||+++++++..+. +|.+.|.+++ |+++++.|++++.||.|
T Consensus 242 l~gH~~~v~~~~f-----~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~-~hs~~is~~~---f~~d~~~l~s~s~d~~i 312 (456)
T KOG0266|consen 242 LKGHSTYVTSVAF-----SPDGNLLVSGSDDGTVRIWDVRTGECVRKLK-GHSDGISGLA---FSPDGNLLVSASYDGTI 312 (456)
T ss_pred ecCCCCceEEEEe-----cCCCCEEEEecCCCcEEEEeccCCeEEEeee-ccCCceEEEE---ECCCCCEEEEcCCCccE
Confidence 8899999999999 6789999999999999999999999999997 9999999997 89999999999999999
Q ss_pred EEEeCCCCC--ccceecccccccccccc--eEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCC
Q 000685 240 ILWSADHGQ--DSRELVPKLSLKAHDGG--VVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSV 315 (1352)
Q Consensus 240 rVWDl~tg~--~~~~~~~~~~l~gH~~~--V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~ 315 (1352)
++||+.++. ++.. +.++... ++++.|+| ++.+|++++.|+.+++||+..+.++..+ .+|..
T Consensus 313 ~vwd~~~~~~~~~~~------~~~~~~~~~~~~~~fsp---~~~~ll~~~~d~~~~~w~l~~~~~~~~~------~~~~~ 377 (456)
T KOG0266|consen 313 RVWDLETGSKLCLKL------LSGAENSAPVTSVQFSP---NGKYLLSASLDRTLKLWDLRSGKSVGTY------TGHSN 377 (456)
T ss_pred EEEECCCCceeeeec------ccCCCCCCceeEEEECC---CCcEEEEecCCCeEEEEEccCCcceeee------cccCC
Confidence 999999988 3333 4555554 99999999 8999999999999999999999988874 56665
Q ss_pred ce---eEEEeCCCCCEE-EEecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEE
Q 000685 316 AS---WCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGT 389 (1352)
Q Consensus 316 ~V---~svafspdg~lL-S~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs 389 (1352)
.+ .+...++.+.++ +++.|+. +||+.+.. .+..+.+|....+..+.+++ ..+++++++
T Consensus 378 ~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~---------------~~~~l~~h~~~~~~~~~~~~-~~~~~~s~s 441 (456)
T KOG0266|consen 378 LVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG---------------ILQRLEGHSKAAVSDLSSHP-TENLIASSS 441 (456)
T ss_pred cceeEecccccCCCCeEEEEeCCceEEEEeCCccc---------------hhhhhcCCCCCceeccccCC-CcCeeeecC
Confidence 43 344456777755 7889985 89998642 24456667333889999999 688888888
Q ss_pred --CCCeEEEEecCC
Q 000685 390 --NVGVIISEFDPR 401 (1352)
Q Consensus 390 --~DG~IlriWd~~ 401 (1352)
.|+.+ ++|...
T Consensus 442 ~~~d~~~-~~w~~~ 454 (456)
T KOG0266|consen 442 FEGDGLI-RLWKYD 454 (456)
T ss_pred cCCCceE-EEecCC
Confidence 78887 799643
No 31
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.94 E-value=1.4e-25 Score=242.72 Aligned_cols=285 Identities=19% Similarity=0.246 Sum_probs=233.0
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCcEEEEEeccCccceEEec--cccceeEecccccCCCccc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNW-EHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTE 80 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl-~tg~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~ 80 (1352)
+..+.||.+.|..+.|+|+|.+||||+.|+.|.+|++ ...+-...++ +|.+.|.-+. .++..|++++
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lk-gHsgAVM~l~~~~d~s~i~S~g--------- 109 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLK-GHSGAVMELHGMRDGSHILSCG--------- 109 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeec-cccceeEeeeeccCCCEEEEec---------
Confidence 3457899999999999999999999999999999994 3444455565 6777777666 7888888876
Q ss_pred cccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccc
Q 000685 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPK 159 (1352)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~ 159 (1352)
.|.+++.||..+++++ ....+| ...|+++.-+.-|..++.++++|+++ +||.++..... +
T Consensus 110 ------------tDk~v~~wD~~tG~~~----rk~k~h-~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~--t 170 (338)
T KOG0265|consen 110 ------------TDKTVRGWDAETGKRI----RKHKGH-TSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK--T 170 (338)
T ss_pred ------------CCceEEEEecccceee----ehhccc-cceeeecCccccCCeEEEecCCCceEEEEeecccchhh--c
Confidence 6899999999999987 344555 88899998777788899999999999 55988754322 2
Q ss_pred cccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcE
Q 000685 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1352)
Q Consensus 160 ~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtV 239 (1352)
....-.++++.| ..++..+.+|+-|+.|++||++.+.....+. ||.+.|+.+. .+++|.++.+-+.|.+|
T Consensus 171 -~~~kyqltAv~f-----~d~s~qv~sggIdn~ikvWd~r~~d~~~~ls-Gh~DtIt~ls---ls~~gs~llsnsMd~tv 240 (338)
T KOG0265|consen 171 -FENKYQLTAVGF-----KDTSDQVISGGIDNDIKVWDLRKNDGLYTLS-GHADTITGLS---LSRYGSFLLSNSMDNTV 240 (338)
T ss_pred -cccceeEEEEEe-----cccccceeeccccCceeeeccccCcceEEee-cccCceeeEE---eccCCCccccccccceE
Confidence 223557899999 6788899999999999999999999988887 9999999996 89999999999999999
Q ss_pred EEEeCCCCCccceeccccccccccc----ceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCC
Q 000685 240 ILWSADHGQDSRELVPKLSLKAHDG----GVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSV 315 (1352)
Q Consensus 240 rVWDl~tg~~~~~~~~~~~l~gH~~----~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~ 315 (1352)
++||++--...... ...+.+|.. ....++|+| ++..+-.|+.|+.+++||......+.. +.||..
T Consensus 241 rvwd~rp~~p~~R~--v~if~g~~hnfeknlL~cswsp---~~~~i~ags~dr~vyvwd~~~r~~lyk------lpGh~g 309 (338)
T KOG0265|consen 241 RVWDVRPFAPSQRC--VKIFQGHIHNFEKNLLKCSWSP---NGTKITAGSADRFVYVWDTTSRRILYK------LPGHYG 309 (338)
T ss_pred EEEEecccCCCCce--EEEeecchhhhhhhcceeeccC---CCCccccccccceEEEeecccccEEEE------cCCcce
Confidence 99999854322211 122344432 245678999 899999999999999999887777666 799999
Q ss_pred ceeEEEeCCCCCEE-EEecCCeEE
Q 000685 316 ASWCHPRAPNLDIL-TCVKDSHIW 338 (1352)
Q Consensus 316 ~V~svafspdg~lL-S~s~Dg~IW 338 (1352)
.|.++.|+|...+| +++.|.+||
T Consensus 310 svn~~~Fhp~e~iils~~sdk~i~ 333 (338)
T KOG0265|consen 310 SVNEVDFHPTEPIILSCSSDKTIY 333 (338)
T ss_pred eEEEeeecCCCcEEEEeccCceeE
Confidence 99999999998865 899999876
No 32
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.94 E-value=9.2e-26 Score=255.67 Aligned_cols=276 Identities=16% Similarity=0.183 Sum_probs=224.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec--cccceeEecccccCCCccccccCCceEE
Q 000685 12 DKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAMRGGSVKQ 89 (1352)
Q Consensus 12 ~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~~l~~g~V~s 89 (1352)
..|++++|+.+|..||+|+.||.++||+ .+|.++.++. .|...|+.+. .+|.+|++++
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~-~~G~l~~tl~-~HkgPI~slKWnk~G~yilS~~------------------ 295 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWN-KDGNLISTLG-QHKGPIFSLKWNKKGTYILSGG------------------ 295 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEe-cCchhhhhhh-ccCCceEEEEEcCCCCEEEecc------------------
Confidence 5799999999999999999999999999 5678888887 4567788887 7788888876
Q ss_pred EEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEE-EeeCCccccccccccCCCCeE
Q 000685 90 VNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDNKSLV 168 (1352)
Q Consensus 90 VaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~w-Dl~t~~~~~i~~~~~h~~~V~ 168 (1352)
.|+++.+||..++.... ....| ...-..+.|-.+. -+++++.|+.+++ -+.. ...+.++.+|.+.|.
T Consensus 296 ---vD~ttilwd~~~g~~~q----~f~~~-s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~--~~P~~t~~GH~g~V~ 363 (524)
T KOG0273|consen 296 ---VDGTTILWDAHTGTVKQ----QFEFH-SAPALDVDWQSND--EFATSSTDGCIHVCKVGE--DRPVKTFIGHHGEVN 363 (524)
T ss_pred ---CCccEEEEeccCceEEE----eeeec-cCCccceEEecCc--eEeecCCCceEEEEEecC--CCcceeeecccCceE
Confidence 68999999998887652 12222 3333567777665 5788888888855 2222 234667788999999
Q ss_pred EEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEee------eCCCCCEEEEEeCCCcEEEE
Q 000685 169 CMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFM------ASSGEALLVSGGSDGLLILW 242 (1352)
Q Consensus 169 ~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~------~s~dg~~LaSgS~DGtVrVW 242 (1352)
++.| +|.+.+|+++|+|++++||+.....+...+. +|+..|+.+.|.. .+..+..+++++.|++|++|
T Consensus 364 alk~-----n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~-~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lw 437 (524)
T KOG0273|consen 364 ALKW-----NPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ-AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLW 437 (524)
T ss_pred EEEE-----CCCCceEEEecCCCeeEeeecCCCcchhhhh-hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEE
Confidence 9999 6789999999999999999999888888887 9999999998741 22345789999999999999
Q ss_pred eCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEe
Q 000685 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPR 322 (1352)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svaf 322 (1352)
|+..+.++.. |..|..+|++++|+| +++|+++|+.||.|++|+..+++.++.. ...+.|..++|
T Consensus 438 dv~~gv~i~~------f~kH~~pVysvafS~---~g~ylAsGs~dg~V~iws~~~~~l~~s~-------~~~~~Ifel~W 501 (524)
T KOG0273|consen 438 DVESGVPIHT------LMKHQEPVYSVAFSP---NGRYLASGSLDGCVHIWSTKTGKLVKSY-------QGTGGIFELCW 501 (524)
T ss_pred EccCCceeEe------eccCCCceEEEEecC---CCcEEEecCCCCeeEeccccchheeEee-------cCCCeEEEEEE
Confidence 9999987665 788999999999999 8999999999999999999999998873 34566899999
Q ss_pred CCCCCEE-EEecCCe--EEecc
Q 000685 323 APNLDIL-TCVKDSH--IWAIE 341 (1352)
Q Consensus 323 spdg~lL-S~s~Dg~--IWDi~ 341 (1352)
+-+|..| ++-.|+. +-|++
T Consensus 502 n~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 502 NAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cCCCCEEEEEecCCCceEEEec
Confidence 9999977 4556664 45543
No 33
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.94 E-value=3.3e-26 Score=274.08 Aligned_cols=240 Identities=18% Similarity=0.248 Sum_probs=208.1
Q ss_pred CCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccc-----------------------------cccccccCCCCeEE
Q 000685 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGR-----------------------------DIPKQELDNKSLVC 169 (1352)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~-----------------------------~i~~~~~h~~~V~~ 169 (1352)
...++|..|++++. ++|.|..|..| +|.+...+.+ ......+|.++|..
T Consensus 378 ~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred CCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 45689999999998 99999988888 5544321100 11234678999999
Q ss_pred EEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCc
Q 000685 170 MEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQD 249 (1352)
Q Consensus 170 vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~ 249 (1352)
..| +|+.++|++||.|++||+|.+.++.++..+. ||..+|.++. |+|.|.+|+|+|.|++-++|.....+.
T Consensus 457 ~sF-----sPd~rfLlScSED~svRLWsl~t~s~~V~y~-GH~~PVwdV~---F~P~GyYFatas~D~tArLWs~d~~~P 527 (707)
T KOG0263|consen 457 CSF-----SPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK-GHLAPVWDVQ---FAPRGYYFATASHDQTARLWSTDHNKP 527 (707)
T ss_pred eee-----cccccceeeccCCcceeeeecccceeEEEec-CCCcceeeEE---ecCCceEEEecCCCceeeeeecccCCc
Confidence 999 7899999999999999999999999998887 9999999998 789999999999999999999987654
Q ss_pred cceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEE
Q 000685 250 SRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL 329 (1352)
Q Consensus 250 ~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lL 329 (1352)
+ ..+.+|-..|.|+.||| +..|+++||.|++||+||+.+|..++. +.||..+|.+++|||+|++|
T Consensus 528 l------RifaghlsDV~cv~FHP---Ns~Y~aTGSsD~tVRlWDv~~G~~VRi------F~GH~~~V~al~~Sp~Gr~L 592 (707)
T KOG0263|consen 528 L------RIFAGHLSDVDCVSFHP---NSNYVATGSSDRTVRLWDVSTGNSVRI------FTGHKGPVTALAFSPCGRYL 592 (707)
T ss_pred h------hhhcccccccceEEECC---cccccccCCCCceEEEEEcCCCcEEEE------ecCCCCceEEEEEcCCCceE
Confidence 4 44799999999999999 899999999999999999999999998 48999999999999999977
Q ss_pred -EEecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCC
Q 000685 330 -TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1352)
Q Consensus 330 -S~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~~ 402 (1352)
+|++|+. |||+.++. .+..+.+|.+ .|+++.|+. ++..|++|+.|+.| ++||...
T Consensus 593 aSg~ed~~I~iWDl~~~~---------------~v~~l~~Ht~-ti~SlsFS~-dg~vLasgg~DnsV-~lWD~~~ 650 (707)
T KOG0263|consen 593 ASGDEDGLIKIWDLANGS---------------LVKQLKGHTG-TIYSLSFSR-DGNVLASGGADNSV-RLWDLTK 650 (707)
T ss_pred eecccCCcEEEEEcCCCc---------------chhhhhcccC-ceeEEEEec-CCCEEEecCCCCeE-EEEEchh
Confidence 6889996 89999763 3567778866 999999999 78889999999997 8999764
No 34
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.94 E-value=7.6e-25 Score=286.22 Aligned_cols=305 Identities=14% Similarity=0.172 Sum_probs=224.0
Q ss_pred EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCC
Q 000685 6 AFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGG 85 (1352)
Q Consensus 6 ~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g 85 (1352)
.+.+|.+.|++++|+|+|.+|+||+.|+.|+|||..+...- -...+ .
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~--~~~~~-------------------------------~ 524 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKD--GRDIH-------------------------------Y 524 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccc--ccccc-------------------------------c
Confidence 35569999999999999999999999999999997641100 00000 0
Q ss_pred ceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccccccCC
Q 000685 86 SVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDN 164 (1352)
Q Consensus 86 ~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~h~ 164 (1352)
++ ....+ ...+.+++|++....+|++++.|+.+ +||+.+++. +.....|.
T Consensus 525 ~~--------------------------~~~~~-~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~--~~~~~~H~ 575 (793)
T PLN00181 525 PV--------------------------VELAS-RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL--VTEMKEHE 575 (793)
T ss_pred ce--------------------------EEecc-cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeE--EEEecCCC
Confidence 00 00001 33577888987644589999999999 668887643 44567899
Q ss_pred CCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeC
Q 000685 165 KSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSA 244 (1352)
Q Consensus 165 ~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl 244 (1352)
..|++++|+| +++.+|++|+.||+|++||++++..+..+. . ...|.++.| .++++.+|++|+.||+|++||+
T Consensus 576 ~~V~~l~~~p----~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-~-~~~v~~v~~--~~~~g~~latgs~dg~I~iwD~ 647 (793)
T PLN00181 576 KRVWSIDYSS----ADPTLLASGSDDGSVKLWSINQGVSIGTIK-T-KANICCVQF--PSESGRSLAFGSADHKVYYYDL 647 (793)
T ss_pred CCEEEEEEcC----CCCCEEEEEcCCCEEEEEECCCCcEEEEEe-c-CCCeEEEEE--eCCCCCEEEEEeCCCeEEEEEC
Confidence 9999999942 368899999999999999999998888875 3 467888873 4678999999999999999999
Q ss_pred CCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCC------eEEEEecCCCcccccCCcee
Q 000685 245 DHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSF------KELRRIKPVPKLACHSVASW 318 (1352)
Q Consensus 245 ~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg------~~l~~~~~~~~l~~hs~~V~ 318 (1352)
++... +...+.+|...|.++.|.+ +.+|++++.|++|++||+..+ .+++. +.+|...+.
T Consensus 648 ~~~~~-----~~~~~~~h~~~V~~v~f~~----~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~------~~gh~~~i~ 712 (793)
T PLN00181 648 RNPKL-----PLCTMIGHSKTVSYVRFVD----SSTLVSSSTDNTLKLWDLSMSISGINETPLHS------FMGHTNVKN 712 (793)
T ss_pred CCCCc-----cceEecCCCCCEEEEEEeC----CCEEEEEECCCEEEEEeCCCCccccCCcceEE------EcCCCCCee
Confidence 87642 1234678999999999974 679999999999999999753 34444 678999999
Q ss_pred EEEeCCCCCEE-EEecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEE
Q 000685 319 CHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVII 395 (1352)
Q Consensus 319 svafspdg~lL-S~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~Il 395 (1352)
++.|++++.+| +|+.|++ ||+....... ...... ............+.. .|.+++|++ ++..|++|+.||.|
T Consensus 713 ~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~-~s~~~~-~~~~~~~~~~~~~~~-~V~~v~ws~-~~~~lva~~~dG~I- 787 (793)
T PLN00181 713 FVGLSVSDGYIATGSETNEVFVYHKAFPMPV-LSYKFK-TIDPVSGLEVDDASQ-FISSVCWRG-QSSTLVAANSTGNI- 787 (793)
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEECCCCCce-EEEecc-cCCcccccccCCCCc-EEEEEEEcC-CCCeEEEecCCCcE-
Confidence 99999998866 6788986 7987643110 000000 000000011222333 799999999 67789999999997
Q ss_pred EEecC
Q 000685 396 SEFDP 400 (1352)
Q Consensus 396 riWd~ 400 (1352)
++|++
T Consensus 788 ~i~~~ 792 (793)
T PLN00181 788 KILEM 792 (793)
T ss_pred EEEec
Confidence 89974
No 35
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.94 E-value=1.7e-26 Score=251.89 Aligned_cols=264 Identities=19% Similarity=0.279 Sum_probs=216.7
Q ss_pred cCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccccccCCCCeEEEE
Q 000685 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCME 171 (1352)
Q Consensus 93 ~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~h~~~V~~va 171 (1352)
.|.+|++||.++..|. ..+.+| ++.|.|+.|.. + ++++|+.|.++ +||+++++. +.+...|.+.|..+.
T Consensus 215 rDnTikiWD~n~~~c~----~~L~GH-tGSVLCLqyd~--r-viisGSSDsTvrvWDv~tge~--l~tlihHceaVLhlr 284 (499)
T KOG0281|consen 215 RDNTIKIWDKNSLECL----KILTGH-TGSVLCLQYDE--R-VIVSGSSDSTVRVWDVNTGEP--LNTLIHHCEAVLHLR 284 (499)
T ss_pred ccCceEEeccccHHHH----HhhhcC-CCcEEeeeccc--e-EEEecCCCceEEEEeccCCch--hhHHhhhcceeEEEE
Confidence 6899999999999886 466676 88999999865 3 99999999988 679999865 667889999999999
Q ss_pred EeeccccCCCCEEEEEECCCcEEEEECCCCe---EEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCC
Q 000685 172 FLSRSAVGDVPLVAFGSSDGVIRVLSMISWK---LVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQ 248 (1352)
Q Consensus 172 f~P~s~Spdg~~LasGs~DGtIrIWDl~t~~---~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~ 248 (1352)
| ...+++++|.|.+|.+||+.... +.+.+. ||...|+.+. | +.++++|+|.|++|++|++.+++
T Consensus 285 f-------~ng~mvtcSkDrsiaVWdm~sps~it~rrVLv-GHrAaVNvVd-f----d~kyIVsASgDRTikvW~~st~e 351 (499)
T KOG0281|consen 285 F-------SNGYMVTCSKDRSIAVWDMASPTDITLRRVLV-GHRAAVNVVD-F----DDKYIVSASGDRTIKVWSTSTCE 351 (499)
T ss_pred E-------eCCEEEEecCCceeEEEeccCchHHHHHHHHh-hhhhheeeec-c----ccceEEEecCCceEEEEecccee
Confidence 9 57799999999999999998643 223344 9999999997 2 56699999999999999999999
Q ss_pred ccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCE
Q 000685 249 DSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDI 328 (1352)
Q Consensus 249 ~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~l 328 (1352)
+++. +.+|..+|-|+.|. ++++++||.|.+|++||+..|.|++. +.||..-|.|+.|.. .++
T Consensus 352 fvRt------l~gHkRGIAClQYr-----~rlvVSGSSDntIRlwdi~~G~cLRv------LeGHEeLvRciRFd~-krI 413 (499)
T KOG0281|consen 352 FVRT------LNGHKRGIACLQYR-----DRLVVSGSSDNTIRLWDIECGACLRV------LEGHEELVRCIRFDN-KRI 413 (499)
T ss_pred eehh------hhcccccceehhcc-----CeEEEecCCCceEEEEeccccHHHHH------HhchHHhhhheeecC-cee
Confidence 8776 79999999999984 68999999999999999999999988 799999999999963 458
Q ss_pred EEEecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCCCCCc
Q 000685 329 LTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAV 406 (1352)
Q Consensus 329 LS~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~i 406 (1352)
++|+.||+ |||+....- .....+..++.++..|.. +|..+.|.. ..+++++.|..|+ +||....++.
T Consensus 414 VSGaYDGkikvWdl~aald------pra~~~~~Cl~~lv~hsg-RVFrLQFD~---fqIvsssHddtIL-iWdFl~~~~~ 482 (499)
T KOG0281|consen 414 VSGAYDGKIKVWDLQAALD------PRAPASTLCLRTLVEHSG-RVFRLQFDE---FQIISSSHDDTIL-IWDFLNGPPS 482 (499)
T ss_pred eeccccceEEEEecccccC------CcccccchHHHhhhhccc-eeEEEeecc---eEEEeccCCCeEE-EEEcCCCCcc
Confidence 89999996 899986521 111122223445566766 899999865 5688888888875 9998877665
Q ss_pred cc
Q 000685 407 AP 408 (1352)
Q Consensus 407 ~~ 408 (1352)
..
T Consensus 483 ~~ 484 (499)
T KOG0281|consen 483 AA 484 (499)
T ss_pred cc
Confidence 43
No 36
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=2.3e-24 Score=254.67 Aligned_cols=356 Identities=16% Similarity=0.249 Sum_probs=263.0
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccC--------
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHK-------- 75 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~-------- 75 (1352)
+..|+||++.|+.+-|..+.++|++.+.|+.|++||+++..|..+.- .|...++.+.-+...++++..+..
T Consensus 142 l~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thv-d~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~ 220 (888)
T KOG0306|consen 142 LFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHV-DHRGEIWALVLDEKLLVTAGTDSELKVWELAF 220 (888)
T ss_pred eEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEe-cccceEEEEEEecceEEEEecCCceEEEEeec
Confidence 45789999999999999988999999999999999999999987765 445555555533333333322211
Q ss_pred ------------------------CCccccccC-----------------------------------------------
Q 000685 76 ------------------------GKPTEAMRG----------------------------------------------- 84 (1352)
Q Consensus 76 ------------------------g~~l~~l~~----------------------------------------------- 84 (1352)
++.+.+...
T Consensus 221 ~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~ 300 (888)
T KOG0306|consen 221 EDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENE 300 (888)
T ss_pred ccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccc
Confidence 000000000
Q ss_pred --------------------CceEEEEE-------------cCCeEEEEEcCCccccc----cccccccccCCCCeeeee
Q 000685 85 --------------------GSVKQVNF-------------YDDDVRFWQLWRNRAAA----AEAPTAVSNVTSGFASPP 127 (1352)
Q Consensus 85 --------------------g~V~sVaF-------------~Dg~IrlWDl~t~~~i~----~~~~~~~~~~~~~V~sla 127 (1352)
..+.++.+ .+.++.++.+....... .......+.|...|++++
T Consensus 301 ~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~ 380 (888)
T KOG0306|consen 301 DDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLC 380 (888)
T ss_pred cchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEE
Confidence 11112222 33444444443311100 001123344588999999
Q ss_pred ecCCCCeEEEEEecCcEEEEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 000685 128 PSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRY 207 (1352)
Q Consensus 128 fspdg~~lLasgs~D~~I~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l 207 (1352)
||.+.. ++++|+.+.+++|+..+.++.. ....+++.|..| -|.++++++|...|.+.+||+.+...+.++
T Consensus 381 vS~d~~-~~~Sga~~SikiWn~~t~kciR----Ti~~~y~l~~~F-----vpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti 450 (888)
T KOG0306|consen 381 VSSDSI-LLASGAGESIKIWNRDTLKCIR----TITCGYILASKF-----VPGDRYIVLGTKNGELQVFDLASASLVETI 450 (888)
T ss_pred eecCce-eeeecCCCcEEEEEccCcceeE----EeccccEEEEEe-----cCCCceEEEeccCCceEEEEeehhhhhhhh
Confidence 999886 8899999999999999886532 333459999999 457899999999999999999999888888
Q ss_pred ecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCC-----CCccc--eecccccccccccceEEEEeeccCCCCCE
Q 000685 208 TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH-----GQDSR--ELVPKLSLKAHDGGVVAVELSRVMGGSPQ 280 (1352)
Q Consensus 208 ~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~t-----g~~~~--~~~~~~~l~gH~~~V~slafsp~~~dg~~ 280 (1352)
. +|.+.|.+++ .+|++..+++||.|.+|++||..- +...+ .+....++. -.+.|.|+.++| |+.+
T Consensus 451 ~-AHdgaIWsi~---~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Sp---dgk~ 522 (888)
T KOG0306|consen 451 R-AHDGAIWSIS---LSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSP---DGKL 522 (888)
T ss_pred h-ccccceeeee---ecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcC---CCcE
Confidence 7 9999999998 899999999999999999999752 11111 111112222 346699999999 8999
Q ss_pred EEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEE-EEecCCe--EEeccCCcccccccCccccCC
Q 000685 281 LITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSS 357 (1352)
Q Consensus 281 LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lL-S~s~Dg~--IWDi~t~~~~~~~~~l~~~~~ 357 (1352)
|+.+=.|.+|+||-+++.+..-. +.||.-+|.|+..+||+.++ +||.|.. ||-++-+.
T Consensus 523 LaVsLLdnTVkVyflDtlKFfls------LYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD------------- 583 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDTLKFFLS------LYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD------------- 583 (888)
T ss_pred EEEEeccCeEEEEEecceeeeee------ecccccceeEEeccCCcCeEEeccCCCceEEeccccch-------------
Confidence 99999999999999998776555 78999999999999999965 8898885 89888652
Q ss_pred CCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCC
Q 000685 358 LVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1352)
Q Consensus 358 ~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~~ 402 (1352)
+-..+..|.+ .|.++.|.| ..+++++++.||.| +-||...
T Consensus 584 --CHKS~fAHdD-Svm~V~F~P-~~~~FFt~gKD~kv-KqWDg~k 623 (888)
T KOG0306|consen 584 --CHKSFFAHDD-SVMSVQFLP-KTHLFFTCGKDGKV-KQWDGEK 623 (888)
T ss_pred --hhhhhhcccC-ceeEEEEcc-cceeEEEecCcceE-Eeechhh
Confidence 3456677877 899999999 78889999999997 8998654
No 37
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.2e-24 Score=227.95 Aligned_cols=281 Identities=14% Similarity=0.206 Sum_probs=233.4
Q ss_pred eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec--cccceeEecccccCCCccc
Q 000685 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTE 80 (1352)
Q Consensus 3 ~l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~ 80 (1352)
+++.+.+|.+.|.++.|+-||+|.+|++.|++|++||...|.+++++..| -..+.-+. .|...+++++
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsgh-G~EVlD~~~s~Dnskf~s~G--------- 78 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGH-GHEVLDAALSSDNSKFASCG--------- 78 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCC-CceeeeccccccccccccCC---------
Confidence 57889999999999999999999999999999999999999999999854 34444333 5666777765
Q ss_pred cccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccc
Q 000685 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPK 159 (1352)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~ 159 (1352)
.|..+.+||+.+++.. ....+| ...|+.+.|+.+.. .+++|+.|..+ .||-.+...+.+..
T Consensus 79 ------------gDk~v~vwDV~TGkv~----Rr~rgH-~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 79 ------------GDKAVQVWDVNTGKVD----RRFRGH-LAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred ------------CCceEEEEEcccCeee----eecccc-cceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccch
Confidence 6889999999999876 455565 88999999999886 99999999999 66998888777777
Q ss_pred cccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcE
Q 000685 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1352)
Q Consensus 160 ~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtV 239 (1352)
+....+.|.++.. .+..|+.||.||++|.||++.|+....+. .++|+|++ ++++++..+.++.|+++
T Consensus 141 ldea~D~V~Si~v-------~~heIvaGS~DGtvRtydiR~G~l~sDy~---g~pit~vs---~s~d~nc~La~~l~stl 207 (307)
T KOG0316|consen 141 LDEAKDGVSSIDV-------AEHEIVAGSVDGTVRTYDIRKGTLSSDYF---GHPITSVS---FSKDGNCSLASSLDSTL 207 (307)
T ss_pred hhhhcCceeEEEe-------cccEEEeeccCCcEEEEEeecceeehhhc---CCcceeEE---ecCCCCEEEEeecccee
Confidence 7778899999999 57889999999999999999998876554 45899998 89999999999999999
Q ss_pred EEEeCCCCCccceecccccccccccceEEEE--eeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCc-
Q 000685 240 ILWSADHGQDSRELVPKLSLKAHDGGVVAVE--LSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVA- 316 (1352)
Q Consensus 240 rVWDl~tg~~~~~~~~~~~l~gH~~~V~sla--fsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~- 316 (1352)
|+.|-.+|+.+.. ++||...=+.+. ++. ....+++||.||.|.+||+.+...+.. +..|...
T Consensus 208 rLlDk~tGklL~s------YkGhkn~eykldc~l~q---sdthV~sgSEDG~Vy~wdLvd~~~~sk------~~~~~~v~ 272 (307)
T KOG0316|consen 208 RLLDKETGKLLKS------YKGHKNMEYKLDCCLNQ---SDTHVFSGSEDGKVYFWDLVDETQISK------LSVVSTVI 272 (307)
T ss_pred eecccchhHHHHH------hcccccceeeeeeeecc---cceeEEeccCCceEEEEEeccceeeee------eccCCcee
Confidence 9999999998776 588877654443 443 567899999999999999999888776 4555554
Q ss_pred eeEEEeCCCCC-EEEEecCCe-EEe
Q 000685 317 SWCHPRAPNLD-ILTCVKDSH-IWA 339 (1352)
Q Consensus 317 V~svafspdg~-lLS~s~Dg~-IWD 339 (1352)
|.++.++|.-. ++++...+. .|-
T Consensus 273 v~dl~~hp~~~~f~~A~~~~~~~~~ 297 (307)
T KOG0316|consen 273 VTDLSCHPTMDDFITATGHGDLFWY 297 (307)
T ss_pred EEeeecccCccceeEecCCceecee
Confidence 77999999855 555544433 554
No 38
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=7.3e-26 Score=257.75 Aligned_cols=286 Identities=15% Similarity=0.198 Sum_probs=234.9
Q ss_pred eEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CcEEEEEeccCccceEEec--cccceeEecccccCCCcc
Q 000685 4 LKAFRPTNDKIVKIQLHP-THPWLVTADASDHVSVWNWEH-RQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPT 79 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSP-dg~~LaTgs~DG~VrVWDl~t-g~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l 79 (1352)
+++|.||+..|+++.|.| .+.+|++++.|+.|+|||+.. ++++++|. +|...|..+. .+|..+.+++
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~-gH~k~Vrd~~~s~~g~~fLS~s-------- 277 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK-GHRKPVRDASFNNCGTSFLSAS-------- 277 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhh-cchhhhhhhhccccCCeeeeee--------
Confidence 688999999999999999 888999999999999999866 89999998 6666666665 6777777665
Q ss_pred ccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCcccccc
Q 000685 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIP 158 (1352)
Q Consensus 80 ~~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~ 158 (1352)
.|+.+++||+.+|+++ ...+....+.|+.|+|++++.+++|+.|+.| .||+++++. +.
T Consensus 278 -------------fD~~lKlwDtETG~~~------~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv--vq 336 (503)
T KOG0282|consen 278 -------------FDRFLKLWDTETGQVL------SRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV--VQ 336 (503)
T ss_pred -------------cceeeeeeccccceEE------EEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH--HH
Confidence 6999999999999886 2334466789999999996677776666655 789999864 45
Q ss_pred ccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCc
Q 000685 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL 238 (1352)
Q Consensus 159 ~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGt 238 (1352)
....|-+.|..+.| -++|.++++.++|++++||+.+..-.++.+...+.....|+. .+|++.+++.-+.|+.
T Consensus 337 eYd~hLg~i~~i~F-----~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~---~~P~~~~~~aQs~dN~ 408 (503)
T KOG0282|consen 337 EYDRHLGAILDITF-----VDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLT---LHPNGKWFAAQSMDNY 408 (503)
T ss_pred HHHhhhhheeeeEE-----ccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCccee---cCCCCCeehhhccCce
Confidence 56778899999999 458999999999999999999988776655434556667776 7999999999999999
Q ss_pred EEEEeCCCCCccceeccccccccccc--ceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCc
Q 000685 239 LILWSADHGQDSRELVPKLSLKAHDG--GVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVA 316 (1352)
Q Consensus 239 VrVWDl~tg~~~~~~~~~~~l~gH~~--~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~ 316 (1352)
|.++.+...-.+ .....+.||.. .-..+.|+| |+.+|++|+.||.+.+||.++.+.+.. +..|...
T Consensus 409 i~ifs~~~~~r~---nkkK~feGh~vaGys~~v~fSp---DG~~l~SGdsdG~v~~wdwkt~kl~~~------lkah~~~ 476 (503)
T KOG0282|consen 409 IAIFSTVPPFRL---NKKKRFEGHSVAGYSCQVDFSP---DGRTLCSGDSDGKVNFWDWKTTKLVSK------LKAHDQP 476 (503)
T ss_pred EEEEeccccccc---CHhhhhcceeccCceeeEEEcC---CCCeEEeecCCccEEEeechhhhhhhc------cccCCcc
Confidence 999987643222 22345788864 356788999 899999999999999999998887766 6899999
Q ss_pred eeEEEeCCCC--CEEEEecCCe--EEe
Q 000685 317 SWCHPRAPNL--DILTCVKDSH--IWA 339 (1352)
Q Consensus 317 V~svafspdg--~lLS~s~Dg~--IWD 339 (1352)
+..+.|+|.. .+++||.||. +||
T Consensus 477 ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 477 CIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eEEEEecCCCcceeEecccCceeEecC
Confidence 9999999974 4779999996 685
No 39
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.93 E-value=2.5e-24 Score=232.17 Aligned_cols=243 Identities=19% Similarity=0.264 Sum_probs=201.3
Q ss_pred cccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCc
Q 000685 114 TAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGV 192 (1352)
Q Consensus 114 ~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGt 192 (1352)
.+.+| ...|.++.|++|++ .+++++.||.+ +||..+... +........+|...+| +|.|+++++|+.|+.
T Consensus 50 ~LkGH-~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK--~haipl~s~WVMtCA~-----sPSg~~VAcGGLdN~ 120 (343)
T KOG0286|consen 50 TLKGH-LNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNK--VHAIPLPSSWVMTCAY-----SPSGNFVACGGLDNK 120 (343)
T ss_pred Eeccc-ccceeeeEecCCcC-eEEeeccCCeEEEEEcccccc--eeEEecCceeEEEEEE-----CCCCCeEEecCcCce
Confidence 34455 88999999999998 78888877766 788777543 3335667889999999 789999999999999
Q ss_pred EEEEECCCC------eEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccce
Q 000685 193 IRVLSMISW------KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGV 266 (1352)
Q Consensus 193 IrIWDl~t~------~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V 266 (1352)
..||++.+. +..+.+. +|.+++.|+. |-. ...|+|+|.|.++-+||+++++.+.. +.||.+.|
T Consensus 121 Csiy~ls~~d~~g~~~v~r~l~-gHtgylScC~---f~d-D~~ilT~SGD~TCalWDie~g~~~~~------f~GH~gDV 189 (343)
T KOG0286|consen 121 CSIYPLSTRDAEGNVRVSRELA-GHTGYLSCCR---FLD-DNHILTGSGDMTCALWDIETGQQTQV------FHGHTGDV 189 (343)
T ss_pred eEEEecccccccccceeeeeec-CccceeEEEE---EcC-CCceEecCCCceEEEEEcccceEEEE------ecCCcccE
Confidence 999999854 3344455 9999999997 343 66889999999999999999987665 68999999
Q ss_pred EEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCC-EEEEecCCe--EEeccCC
Q 000685 267 VAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-ILTCVKDSH--IWAIEHP 343 (1352)
Q Consensus 267 ~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~-lLS~s~Dg~--IWDi~t~ 343 (1352)
.+++++| .+++.+++|+-|+..++||++.+.++++ +.+|...|+++.|.|+|. +.+|+.|++ +||++..
T Consensus 190 ~slsl~p--~~~ntFvSg~cD~~aklWD~R~~~c~qt------F~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD 261 (343)
T KOG0286|consen 190 MSLSLSP--SDGNTFVSGGCDKSAKLWDVRSGQCVQT------FEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRAD 261 (343)
T ss_pred EEEecCC--CCCCeEEecccccceeeeeccCcceeEe------ecccccccceEEEccCCCeeeecCCCceeEEEeecCC
Confidence 9999999 4789999999999999999999999999 589999999999999998 557888885 9999864
Q ss_pred cccccccCccccCCCCCCeEEecC-CcccEEEEEEecCCCcEEEEEECCCeEEEEecCC
Q 000685 344 TYSALTRPLCELSSLVPPQVLAHH-KKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1352)
Q Consensus 344 ~~~~~~~~l~~~~~~~~~~~l~~h-~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~ 401 (1352)
.. +..+... ....|++++|+. .+.+|++|.+|..+ .+||.-
T Consensus 262 ~~---------------~a~ys~~~~~~gitSv~FS~-SGRlLfagy~d~~c-~vWDtl 303 (343)
T KOG0286|consen 262 QE---------------LAVYSHDSIICGITSVAFSK-SGRLLFAGYDDFTC-NVWDTL 303 (343)
T ss_pred cE---------------EeeeccCcccCCceeEEEcc-cccEEEeeecCCce-eEeecc
Confidence 21 2233222 234799999999 78999999999997 699854
No 40
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.6e-25 Score=246.76 Aligned_cols=291 Identities=17% Similarity=0.188 Sum_probs=227.4
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCcccccc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~ 83 (1352)
.+.|..|++.|+-+.||++|++|||++.|.+..+|++..
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~----------------------------------------- 255 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVY----------------------------------------- 255 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEec-----------------------------------------
Confidence 457889999999999999999999999999999999763
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEEEeeCCccccccccccC
Q 000685 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELD 163 (1352)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl~t~~~~~i~~~~~h 163 (1352)
|+.+++. .+..+| ...|.-+.||||.+.++++|.++.+.+||..++.+... ....+
T Consensus 256 ----------d~~~kl~------------~tlvgh-~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~-y~~~~ 311 (519)
T KOG0293|consen 256 ----------DVHFKLK------------KTLVGH-SQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHL-YPSGL 311 (519)
T ss_pred ----------Ccceeee------------eeeecc-cCceEEEEECCCCCeEEecCchHheeeccCCcchhhhh-cccCc
Confidence 2222221 233344 66788999999998555555555666889999986543 22335
Q ss_pred CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEe
Q 000685 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243 (1352)
Q Consensus 164 ~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWD 243 (1352)
...+.|.+| .|||..+++|+.|++|..||+.. ........-....|.+++ ..+||..+++.+.|..|++++
T Consensus 312 ~~S~~sc~W-----~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dla---it~Dgk~vl~v~~d~~i~l~~ 382 (519)
T KOG0293|consen 312 GFSVSSCAW-----CPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLA---ITYDGKYVLLVTVDKKIRLYN 382 (519)
T ss_pred CCCcceeEE-----ccCCceeEecCCCCcEEEecCCc-chhhcccccccceeEEEE---EcCCCcEEEEEecccceeeec
Confidence 688999999 67999999999999999999874 344444422345688887 799999999999999999999
Q ss_pred CCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCce--eEEE
Q 000685 244 ADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVAS--WCHP 321 (1352)
Q Consensus 244 l~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V--~sva 321 (1352)
..+..+.. +.....+|++++.+. +++++++.=.+..+++||+...+.++. +.||...- -.-+
T Consensus 383 ~e~~~dr~-------lise~~~its~~iS~---d~k~~LvnL~~qei~LWDl~e~~lv~k------Y~Ghkq~~fiIrSC 446 (519)
T KOG0293|consen 383 REARVDRG-------LISEEQPITSFSISK---DGKLALVNLQDQEIHLWDLEENKLVRK------YFGHKQGHFIIRSC 446 (519)
T ss_pred hhhhhhhc-------cccccCceeEEEEcC---CCcEEEEEcccCeeEEeecchhhHHHH------hhcccccceEEEec
Confidence 98765432 233456799999997 899999999999999999998777666 56776542 2334
Q ss_pred eCCCC-C-EEEEecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEE
Q 000685 322 RAPNL-D-ILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISE 397 (1352)
Q Consensus 322 fspdg-~-lLS~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~Ilri 397 (1352)
|.... . +++||+|++ ||+..++ .++.++.+|.+ .|+|++|+|.++.++|++++||+| |+
T Consensus 447 Fgg~~~~fiaSGSED~kvyIWhr~sg---------------kll~~LsGHs~-~vNcVswNP~~p~m~ASasDDgtI-RI 509 (519)
T KOG0293|consen 447 FGGGNDKFIASGSEDSKVYIWHRISG---------------KLLAVLSGHSK-TVNCVSWNPADPEMFASASDDGTI-RI 509 (519)
T ss_pred cCCCCcceEEecCCCceEEEEEccCC---------------ceeEeecCCcc-eeeEEecCCCCHHHhhccCCCCeE-EE
Confidence 44332 3 448899996 7988765 56888999998 999999999999999999999998 99
Q ss_pred ecCC
Q 000685 398 FDPR 401 (1352)
Q Consensus 398 Wd~~ 401 (1352)
|.+.
T Consensus 510 Wg~~ 513 (519)
T KOG0293|consen 510 WGPS 513 (519)
T ss_pred ecCC
Confidence 9765
No 41
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=1.1e-25 Score=243.30 Aligned_cols=293 Identities=16% Similarity=0.225 Sum_probs=240.4
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCCceE
Q 000685 9 PTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVK 88 (1352)
Q Consensus 9 gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~ 88 (1352)
|..+-+-|..|||||+||++|+.||.|.|||+.+|+..+.++....
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq---------------------------------- 256 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ---------------------------------- 256 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh----------------------------------
Confidence 4556789999999999999999999999999999988776652210
Q ss_pred EEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccccccCCCCe
Q 000685 89 QVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSL 167 (1352)
Q Consensus 89 sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~h~~~V 167 (1352)
|. .. -++..|.|+.|+.|.. ++++|+.||.| +|.+.++.|... ....|...|
T Consensus 257 -----d~-------------------fM-Mmd~aVlci~FSRDsE-MlAsGsqDGkIKvWri~tG~ClRr-FdrAHtkGv 309 (508)
T KOG0275|consen 257 -----DN-------------------FM-MMDDAVLCISFSRDSE-MLASGSQDGKIKVWRIETGQCLRR-FDRAHTKGV 309 (508)
T ss_pred -----cc-------------------ee-ecccceEEEeecccHH-HhhccCcCCcEEEEEEecchHHHH-hhhhhccCe
Confidence 10 11 1267799999999997 99999999988 789999976331 235899999
Q ss_pred EEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCC
Q 000685 168 VCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHG 247 (1352)
Q Consensus 168 ~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg 247 (1352)
+|+.| |.|+..+++++.|.++||.-+++|++++.+. ||.++|+... |.++|..++++|.||+|++|+..+.
T Consensus 310 t~l~F-----SrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr-GHsSyvn~a~---ft~dG~~iisaSsDgtvkvW~~Ktt 380 (508)
T KOG0275|consen 310 TCLSF-----SRDNSQILSASFDQTVRIHGLKSGKCLKEFR-GHSSYVNEAT---FTDDGHHIISASSDGTVKVWHGKTT 380 (508)
T ss_pred eEEEE-----ccCcchhhcccccceEEEeccccchhHHHhc-CccccccceE---EcCCCCeEEEecCCccEEEecCcch
Confidence 99999 8899999999999999999999999999998 9999999996 8999999999999999999999999
Q ss_pred CccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCC
Q 000685 248 QDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD 327 (1352)
Q Consensus 248 ~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~ 327 (1352)
+|+.++.+ .+.+..|+++-.-| .+...++.|...++|.|.++. |+.+++|.... ...+...+...+|.|.
T Consensus 381 eC~~Tfk~----~~~d~~vnsv~~~P--Knpeh~iVCNrsntv~imn~q-GQvVrsfsSGk---REgGdFi~~~lSpkGe 450 (508)
T KOG0275|consen 381 ECLSTFKP----LGTDYPVNSVILLP--KNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGK---REGGDFINAILSPKGE 450 (508)
T ss_pred hhhhhccC----CCCcccceeEEEcC--CCCceEEEEcCCCeEEEEecc-ceEEeeeccCC---ccCCceEEEEecCCCc
Confidence 99887644 34677899999988 577899999999999999976 78888875432 2223444778999999
Q ss_pred EE-EEecCCeEE--eccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEec
Q 000685 328 IL-TCVKDSHIW--AIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1352)
Q Consensus 328 lL-S~s~Dg~IW--Di~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd 399 (1352)
++ +.++|+.+| .+.++ ....++.-|.+ .+.+++-|| ..+++|+-+.||.+ ++|.
T Consensus 451 wiYcigED~vlYCF~~~sG---------------~LE~tl~VhEk-dvIGl~HHP-HqNllAsYsEDgll-KLWk 507 (508)
T KOG0275|consen 451 WIYCIGEDGVLYCFSVLSG---------------KLERTLPVHEK-DVIGLTHHP-HQNLLASYSEDGLL-KLWK 507 (508)
T ss_pred EEEEEccCcEEEEEEeecC---------------ceeeeeecccc-cccccccCc-ccchhhhhcccchh-hhcC
Confidence 77 678999764 44433 22445666766 788999999 58899999999996 8995
No 42
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.1e-25 Score=246.35 Aligned_cols=249 Identities=16% Similarity=0.294 Sum_probs=215.6
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEEeccCccceEEec--cccceeEecccccCCCccc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEH-RQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTE 80 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~t-g~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~ 80 (1352)
.+.|+||.+.|..++|+..|++|++++.|-.+++||..+ .++++.+. +|...+.++. |.|.++++++
T Consensus 143 e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~-gh~h~vS~V~f~P~gd~ilS~s--------- 212 (406)
T KOG0295|consen 143 ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLI-GHEHGVSSVFFLPLGDHILSCS--------- 212 (406)
T ss_pred hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhc-CcccceeeEEEEecCCeeeecc---------
Confidence 467899999999999999999999999999999999886 45555555 4555555555 7888888876
Q ss_pred cccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccc
Q 000685 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPK 159 (1352)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~ 159 (1352)
.|.+|+.|++.++-|+ ....+| ...|+.+..+.||. ++++|+.|..+ +|-..+++++. .
T Consensus 213 ------------rD~tik~We~~tg~cv----~t~~~h-~ewvr~v~v~~DGt-i~As~s~dqtl~vW~~~t~~~k~--~ 272 (406)
T KOG0295|consen 213 ------------RDNTIKAWECDTGYCV----KTFPGH-SEWVRMVRVNQDGT-IIASCSNDQTLRVWVVATKQCKA--E 272 (406)
T ss_pred ------------cccceeEEecccceeE----EeccCc-hHhEEEEEecCCee-EEEecCCCceEEEEEeccchhhh--h
Confidence 7899999999999997 455565 67999999999997 99999999999 55666765543 4
Q ss_pred cccCCCCeEEEEEeeccccC----------CCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCE
Q 000685 160 QELDNKSLVCMEFLSRSAVG----------DVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEAL 229 (1352)
Q Consensus 160 ~~~h~~~V~~vaf~P~s~Sp----------dg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~ 229 (1352)
+..|...|.|++|-|....| .++++.+++.|++|++||+.++.++.++. ||.+.|..++ |+|.|++
T Consensus 273 lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~-ghdnwVr~~a---f~p~Gky 348 (406)
T KOG0295|consen 273 LREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV-GHDNWVRGVA---FSPGGKY 348 (406)
T ss_pred hhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe-cccceeeeeE---EcCCCeE
Confidence 78899999999998864432 23699999999999999999999999998 9999999998 8999999
Q ss_pred EEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEEC
Q 000685 230 LVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDT 295 (1352)
Q Consensus 230 LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl 295 (1352)
|+|+..|+++++||+++++|+.. +..|..-|++++|+. +..+++||+-|.++++|..
T Consensus 349 i~ScaDDktlrvwdl~~~~cmk~------~~ah~hfvt~lDfh~---~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 349 ILSCADDKTLRVWDLKNLQCMKT------LEAHEHFVTSLDFHK---TAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEEEecCCcEEEEEeccceeeec------cCCCcceeEEEecCC---CCceEEeccccceeeeeec
Confidence 99999999999999999998876 678999999999998 7889999999999999974
No 43
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.93 E-value=8.1e-26 Score=252.34 Aligned_cols=243 Identities=14% Similarity=0.255 Sum_probs=205.3
Q ss_pred ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCCc
Q 000685 7 FRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGS 86 (1352)
Q Consensus 7 L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~ 86 (1352)
++.|.+.|+++.|+++|.|++||+.+|.|++|+... ..+
T Consensus 134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnV---------------------------------------- 172 (464)
T KOG0284|consen 134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNV---------------------------------------- 172 (464)
T ss_pred hhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhh----------------------------------------
Confidence 578999999999999999999999999999999653 111
Q ss_pred eEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccccccCCC
Q 000685 87 VKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNK 165 (1352)
Q Consensus 87 V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~h~~ 165 (1352)
.....||...|++++|+|+.. .+++|++|+++ +||....+... .+.+|.-
T Consensus 173 --------------------------k~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee~--vL~GHgw 223 (464)
T KOG0284|consen 173 --------------------------KIIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEER--VLRGHGW 223 (464)
T ss_pred --------------------------HHhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchhh--eeccCCC
Confidence 122334466799999999775 89999999999 66876654433 3589999
Q ss_pred CeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCC
Q 000685 166 SLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSAD 245 (1352)
Q Consensus 166 ~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~ 245 (1352)
.|+|++|| |...+|++|+.|..|++||.++++|+.++. +|...|+.+. |++++++|+|+|.|..++++|++
T Consensus 224 dVksvdWH-----P~kgLiasgskDnlVKlWDprSg~cl~tlh-~HKntVl~~~---f~~n~N~Llt~skD~~~kv~DiR 294 (464)
T KOG0284|consen 224 DVKSVDWH-----PTKGLIASGSKDNLVKLWDPRSGSCLATLH-GHKNTVLAVK---FNPNGNWLLTGSKDQSCKVFDIR 294 (464)
T ss_pred CcceeccC-----CccceeEEccCCceeEeecCCCcchhhhhh-hccceEEEEE---EcCCCCeeEEccCCceEEEEehh
Confidence 99999995 577899999999999999999999999997 9999999998 79999999999999999999999
Q ss_pred CCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCC
Q 000685 246 HGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPN 325 (1352)
Q Consensus 246 tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspd 325 (1352)
+-+.+ +++++|+..|+++.|||. ...+|.+|+.||.|..|.+...+++..+ -..|...||+++|+|=
T Consensus 295 ~mkEl------~~~r~Hkkdv~~~~WhP~--~~~lftsgg~Dgsvvh~~v~~~~p~~~i-----~~AHd~~iwsl~~hPl 361 (464)
T KOG0284|consen 295 TMKEL------FTYRGHKKDVTSLTWHPL--NESLFTSGGSDGSVVHWVVGLEEPLGEI-----PPAHDGEIWSLAYHPL 361 (464)
T ss_pred HhHHH------HHhhcchhhheeeccccc--cccceeeccCCCceEEEeccccccccCC-----Ccccccceeeeecccc
Confidence 65544 447999999999999995 6789999999999999999855554443 3689999999999999
Q ss_pred CCEE-EEecCCe--EEecc
Q 000685 326 LDIL-TCVKDSH--IWAIE 341 (1352)
Q Consensus 326 g~lL-S~s~Dg~--IWDi~ 341 (1352)
|.+| +|+.|.+ +|.-.
T Consensus 362 Ghil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 362 GHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ceeEeecCCCcceeeeccC
Confidence 9988 5677774 78654
No 44
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.93 E-value=1.6e-24 Score=240.41 Aligned_cols=284 Identities=19% Similarity=0.244 Sum_probs=228.7
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec-----cccceeEecccccCCCcccccc
Q 000685 9 PTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG-----AKLEKLAEGELEHKGKPTEAMR 83 (1352)
Q Consensus 9 gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs-----~dg~~Lasgs~d~~g~~l~~l~ 83 (1352)
-|.+.|.++... +.+|+||++||.++|||. .|+++..+. +|.+.+..+. +....+++++
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~-Ght~~ik~v~~v~~n~~~~~fvsas------------ 166 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIV-GHTGPIKSVAWVIKNSSSCLFVSAS------------ 166 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEe-cCCcceeeeEEEecCCccceEEEec------------
Confidence 478889998887 789999999999999994 588888887 5556555443 2222455554
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeC-----------
Q 000685 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVT----------- 151 (1352)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t----------- 151 (1352)
.|.++++|.++.+...........+| ...|-++...++|. .+++|+.|..+ +|+..+
T Consensus 167 ---------~Dqtl~Lw~~~~~~~~~~~~~~~~GH-k~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~ 235 (423)
T KOG0313|consen 167 ---------MDQTLRLWKWNVGENKVKALKVCRGH-KRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSN 235 (423)
T ss_pred ---------CCceEEEEEecCchhhhhHHhHhccc-ccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccch
Confidence 68999999998887654333334455 88999999999997 89999999999 666110
Q ss_pred ------------CccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEE
Q 000685 152 ------------MRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLM 219 (1352)
Q Consensus 152 ------------~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~sla 219 (1352)
+....+.+..+|..+|.++.| + +...+++++.|.+|+.||+.++.++..+. ....++|+.
T Consensus 236 ~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w-----~-d~~v~yS~SwDHTIk~WDletg~~~~~~~--~~ksl~~i~ 307 (423)
T KOG0313|consen 236 RRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW-----S-DATVIYSVSWDHTIKVWDLETGGLKSTLT--TNKSLNCIS 307 (423)
T ss_pred hhhhhhhhhhcccccCceEEecccccceeeEEE-----c-CCCceEeecccceEEEEEeecccceeeee--cCcceeEee
Confidence 011123456789999999999 3 37789999999999999999999988775 567889997
Q ss_pred EeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCe
Q 000685 220 TFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK 299 (1352)
Q Consensus 220 wf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~ 299 (1352)
.++..++|++||.|..||+||.+++.-. ...+++.+|...|.++.|+| .+..+|++|+.|+++++||+++.+
T Consensus 308 ---~~~~~~Ll~~gssdr~irl~DPR~~~gs---~v~~s~~gH~nwVssvkwsp--~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 308 ---YSPLSKLLASGSSDRHIRLWDPRTGDGS---VVSQSLIGHKNWVSSVKWSP--TNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred ---cccccceeeecCCCCceeecCCCCCCCc---eeEEeeecchhhhhheecCC--CCceEEEEEecCCeEEEEEeccCC
Confidence 7889999999999999999999987432 24567899999999999999 477899999999999999999876
Q ss_pred -EEEEecCCCcccccCCceeEEEeCCCCCEEEEecCCeEEecc
Q 000685 300 -ELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAIE 341 (1352)
Q Consensus 300 -~l~~~~~~~~l~~hs~~V~svafspdg~lLS~s~Dg~IWDi~ 341 (1352)
.+.. +.+|...|.++.|+..+.+++||.|.+|.-..
T Consensus 380 ~plyd------I~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 380 APLYD------IAGHNDKVLSVDWNEGGLIVSGGADNKLRIFK 416 (423)
T ss_pred Cccee------eccCCceEEEEeccCCceEEeccCcceEEEec
Confidence 6655 68999999999999888889999999865433
No 45
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.93 E-value=2.1e-24 Score=237.10 Aligned_cols=249 Identities=19% Similarity=0.259 Sum_probs=216.0
Q ss_pred ccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcE
Q 000685 115 AVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVI 193 (1352)
Q Consensus 115 ~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtI 193 (1352)
..+| .++|+|+++.|.++ |+++|+.|+++ +||+.+++.+ .+..+|-..|+.+++ |+...|+.+++.|+.|
T Consensus 147 i~gH-lgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lk--ltltGhi~~vr~vav-----S~rHpYlFs~gedk~V 217 (460)
T KOG0285|consen 147 ISGH-LGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLK--LTLTGHIETVRGVAV-----SKRHPYLFSAGEDKQV 217 (460)
T ss_pred hhhc-cceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEE--Eeecchhheeeeeee-----cccCceEEEecCCCee
Confidence 4444 89999999999875 99999999999 7799999764 356789999999999 7788999999999999
Q ss_pred EEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeec
Q 000685 194 RVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSR 273 (1352)
Q Consensus 194 rIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp 273 (1352)
+.||++.++.++.+. ||-+.|.|++ .+|.-+.|++|+.|.++||||+++...+. ++.||...|.++.+.|
T Consensus 218 KCwDLe~nkvIR~Yh-GHlS~V~~L~---lhPTldvl~t~grDst~RvWDiRtr~~V~------~l~GH~~~V~~V~~~~ 287 (460)
T KOG0285|consen 218 KCWDLEYNKVIRHYH-GHLSGVYCLD---LHPTLDVLVTGGRDSTIRVWDIRTRASVH------VLSGHTNPVASVMCQP 287 (460)
T ss_pred EEEechhhhhHHHhc-cccceeEEEe---ccccceeEEecCCcceEEEeeecccceEE------EecCCCCcceeEEeec
Confidence 999999999999987 9999999998 78999999999999999999999987554 4899999999999998
Q ss_pred cCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEE-EEecCC-eEEeccCCcccccccC
Q 000685 274 VMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDS-HIWAIEHPTYSALTRP 351 (1352)
Q Consensus 274 ~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lL-S~s~Dg-~IWDi~t~~~~~~~~~ 351 (1352)
-...+++||.|++|++||+..|+...+ +..|...|.+++.+|....+ ++|.|. +-|++..+.
T Consensus 288 ---~dpqvit~S~D~tvrlWDl~agkt~~t------lt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~------- 351 (460)
T KOG0285|consen 288 ---TDPQVITGSHDSTVRLWDLRAGKTMIT------LTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGE------- 351 (460)
T ss_pred ---CCCceEEecCCceEEEeeeccCceeEe------eecccceeeEEecCCchhhhhccCCccceeccCCccc-------
Confidence 467999999999999999999998777 67899999999999997755 677776 489988663
Q ss_pred ccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCCCCCccccC
Q 000685 352 LCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPLP 410 (1352)
Q Consensus 352 l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~i~~l~ 410 (1352)
.+..+++|.. .|.++.... ++ ++++|++.|.+ ..||.++.+......
T Consensus 352 --------f~~nlsgh~~-iintl~~ns-D~-v~~~G~dng~~-~fwdwksg~nyQ~~~ 398 (460)
T KOG0285|consen 352 --------FLQNLSGHNA-IINTLSVNS-DG-VLVSGGDNGSI-MFWDWKSGHNYQRGQ 398 (460)
T ss_pred --------hhhccccccc-eeeeeeecc-Cc-eEEEcCCceEE-EEEecCcCccccccc
Confidence 2556778877 899999887 44 48899999997 799999988776653
No 46
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=1.3e-23 Score=248.36 Aligned_cols=283 Identities=19% Similarity=0.324 Sum_probs=236.4
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec--cccceeEecccccCCCccccc
Q 000685 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAM 82 (1352)
Q Consensus 5 ~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~~l 82 (1352)
.++.||...|.+++||.+...++|| ..+.|+|||..+.+|++++..+ .+.+.. |..++++.|.
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~---y~l~~~Fvpgd~~Iv~G~----------- 431 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTITCG---YILASKFVPGDRYIVLGT----------- 431 (888)
T ss_pred eeeccchhheeEEEeecCceeeeec-CCCcEEEEEccCcceeEEeccc---cEEEEEecCCCceEEEec-----------
Confidence 4678999999999999998777777 6778999999999999999855 232222 7777777775
Q ss_pred cCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeC-----Ccccc
Q 000685 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVT-----MRGRD 156 (1352)
Q Consensus 83 ~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t-----~~~~~ 156 (1352)
..|.+.++|+.....+ .... .|++.|++++.+||++ -+++|+.|.++ +||..- +..+.
T Consensus 432 ----------k~Gel~vfdlaS~~l~----Eti~-AHdgaIWsi~~~pD~~-g~vT~saDktVkfWdf~l~~~~~gt~~k 495 (888)
T KOG0306|consen 432 ----------KNGELQVFDLASASLV----ETIR-AHDGAIWSISLSPDNK-GFVTGSADKTVKFWDFKLVVSVPGTQKK 495 (888)
T ss_pred ----------cCCceEEEEeehhhhh----hhhh-ccccceeeeeecCCCC-ceEEecCCcEEEEEeEEEEeccCcccce
Confidence 6789999999887664 3334 4599999999999998 88999999999 565432 11111
Q ss_pred cccc-----ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEE
Q 000685 157 IPKQ-----ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLV 231 (1352)
Q Consensus 157 i~~~-----~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~La 231 (1352)
+... -.-.+.|.|+.+ ||||.+|+++-.|.+|+||-+.+.+..-.+. ||.-+|.|+. .++|+.+++
T Consensus 496 ~lsl~~~rtLel~ddvL~v~~-----Spdgk~LaVsLLdnTVkVyflDtlKFflsLY-GHkLPV~smD---IS~DSkliv 566 (888)
T KOG0306|consen 496 VLSLKHTRTLELEDDVLCVSV-----SPDGKLLAVSLLDNTVKVYFLDTLKFFLSLY-GHKLPVLSMD---ISPDSKLIV 566 (888)
T ss_pred eeeeccceEEeccccEEEEEE-----cCCCcEEEEEeccCeEEEEEecceeeeeeec-ccccceeEEe---ccCCcCeEE
Confidence 1010 112578999999 8899999999999999999999999988888 9999999998 899999999
Q ss_pred EEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCccc
Q 000685 232 SGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLA 311 (1352)
Q Consensus 232 SgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~ 311 (1352)
|||.|..|++|-+.=|.|.+. +.+|++.|.++.|.| ...++.++|.|+.|+-||-...++++. +.
T Consensus 567 TgSADKnVKiWGLdFGDCHKS------~fAHdDSvm~V~F~P---~~~~FFt~gKD~kvKqWDg~kFe~iq~------L~ 631 (888)
T KOG0306|consen 567 TGSADKNVKIWGLDFGDCHKS------FFAHDDSVMSVQFLP---KTHLFFTCGKDGKVKQWDGEKFEEIQK------LD 631 (888)
T ss_pred eccCCCceEEeccccchhhhh------hhcccCceeEEEEcc---cceeEEEecCcceEEeechhhhhhhee------ec
Confidence 999999999999999988665 789999999999999 788999999999999999888777777 79
Q ss_pred ccCCceeEEEeCCCCCEE-EEecCCe--EEeccC
Q 000685 312 CHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEH 342 (1352)
Q Consensus 312 ~hs~~V~svafspdg~lL-S~s~Dg~--IWDi~t 342 (1352)
+|...|||++.+|+|.++ ++|.|.. +|....
T Consensus 632 ~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 632 GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred cchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 999999999999999866 7888874 787653
No 47
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.92 E-value=3.3e-23 Score=229.28 Aligned_cols=287 Identities=16% Similarity=0.195 Sum_probs=235.9
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec--cccceeEecccccCCCcccc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEA 81 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~~ 81 (1352)
+-.+.||.+.|+|+.||.+|.+||||+-+|.|+||+..+|.....+. ...+.+..+. |.+.+|+.|+
T Consensus 99 ~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~-~e~~dieWl~WHp~a~illAG~---------- 167 (399)
T KOG0296|consen 99 AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD-QEVEDIEWLKWHPRAHILLAGS---------- 167 (399)
T ss_pred eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee-cccCceEEEEecccccEEEeec----------
Confidence 45789999999999999999999999999999999999999988886 3445666665 7888888886
Q ss_pred ccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCcccccccc
Q 000685 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQ 160 (1352)
Q Consensus 82 l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~ 160 (1352)
.||.+-+|.+...... +...+| ...+++=.|.|+|+ .++++.+|+++ +||+.++...... .
T Consensus 168 -----------~DGsvWmw~ip~~~~~----kv~~Gh-~~~ct~G~f~pdGK-r~~tgy~dgti~~Wn~ktg~p~~~~-~ 229 (399)
T KOG0296|consen 168 -----------TDGSVWMWQIPSQALC----KVMSGH-NSPCTCGEFIPDGK-RILTGYDDGTIIVWNPKTGQPLHKI-T 229 (399)
T ss_pred -----------CCCcEEEEECCCccee----eEecCC-CCCcccccccCCCc-eEEEEecCceEEEEecCCCceeEEe-c
Confidence 6899999999885332 455665 88999999999998 88899999988 6799998643321 1
Q ss_pred ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEec-------CCCCCeeEEEEeeeCCCCCEEEEE
Q 000685 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTG-------GHKGSISCLMTFMASSGEALLVSG 233 (1352)
Q Consensus 161 ~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~-------gH~~~V~slawf~~s~dg~~LaSg 233 (1352)
........|+.+ +..+..++.|+.++.+.+-+..+++.+..... .|...+.|+....++..-.+.++|
T Consensus 230 ~~e~~~~~~~~~-----~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G 304 (399)
T KOG0296|consen 230 QAEGLELPCISL-----NLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACG 304 (399)
T ss_pred ccccCcCCcccc-----ccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcc
Confidence 223556778888 67889999999999999999989988776642 567777777644455666789999
Q ss_pred eCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCccccc
Q 000685 234 GSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACH 313 (1352)
Q Consensus 234 S~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~h 313 (1352)
+.||+|.|||+...+..+ ...|..+|..+.|-+ ..+|++++.||.|+.||.++|+++.+ +.||
T Consensus 305 ~vdG~i~iyD~a~~~~R~-------~c~he~~V~~l~w~~----t~~l~t~c~~g~v~~wDaRtG~l~~~------y~GH 367 (399)
T KOG0296|consen 305 SVDGTIAIYDLAASTLRH-------ICEHEDGVTKLKWLN----TDYLLTACANGKVRQWDARTGQLKFT------YTGH 367 (399)
T ss_pred cccceEEEEecccchhhe-------eccCCCceEEEEEcC----cchheeeccCceEEeeeccccceEEE------EecC
Confidence 999999999998765322 356899999999986 57999999999999999999999988 6999
Q ss_pred CCceeEEEeCCCCCEE-EEecCCe--EEecc
Q 000685 314 SVASWCHPRAPNLDIL-TCVKDSH--IWAIE 341 (1352)
Q Consensus 314 s~~V~svafspdg~lL-S~s~Dg~--IWDi~ 341 (1352)
...|.+++++|+.+++ ++|.|++ ||++.
T Consensus 368 ~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 368 QMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred chheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999998855 8888885 77653
No 48
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=4e-23 Score=252.94 Aligned_cols=251 Identities=20% Similarity=0.306 Sum_probs=203.1
Q ss_pred ccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcE
Q 000685 115 AVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVI 193 (1352)
Q Consensus 115 ~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtI 193 (1352)
...++...|.++.|+++|+ .+++++.++.+ .|+....+.........|...|++++| ++++.++++|+.|++|
T Consensus 154 ~~~~~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~f-----s~d~~~l~s~s~D~ti 227 (456)
T KOG0266|consen 154 LAGHECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAF-----SPDGSYLLSGSDDKTL 227 (456)
T ss_pred ecccccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccchhhccccccccceeeeEE-----CCCCcEEEEecCCceE
Confidence 3455577899999999998 68888888888 456655442223344789999999999 7899999999999999
Q ss_pred EEEEC-CCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEee
Q 000685 194 RVLSM-ISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELS 272 (1352)
Q Consensus 194 rIWDl-~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafs 272 (1352)
+|||+ ..+.+++++. +|...|++++ |+++++++++|+.|++|++||++++++... +.+|.++|++++|+
T Consensus 228 riwd~~~~~~~~~~l~-gH~~~v~~~~---f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~------l~~hs~~is~~~f~ 297 (456)
T KOG0266|consen 228 RIWDLKDDGRNLKTLK-GHSTYVTSVA---FSPDGNLLVSGSDDGTVRIWDVRTGECVRK------LKGHSDGISGLAFS 297 (456)
T ss_pred EEeeccCCCeEEEEec-CCCCceEEEE---ecCCCCEEEEecCCCcEEEEeccCCeEEEe------eeccCCceEEEEEC
Confidence 99999 5568888887 9999999998 899999999999999999999999887665 79999999999999
Q ss_pred ccCCCCCEEEEEECCCcEEEEECCCCe--EEEEecCCCcccccCC--ceeEEEeCCCCCEE-EEecCCe--EEeccCCcc
Q 000685 273 RVMGGSPQLITIGADKTLAIWDTVSFK--ELRRIKPVPKLACHSV--ASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTY 345 (1352)
Q Consensus 273 p~~~dg~~LaSgs~DgtV~IWDl~tg~--~l~~~~~~~~l~~hs~--~V~svafspdg~lL-S~s~Dg~--IWDi~t~~~ 345 (1352)
+ ++.+|++++.|+.|+|||+.++. ++.. +.++.. .++++.|+|++.++ +++.|+. +||+....
T Consensus 298 ~---d~~~l~s~s~d~~i~vwd~~~~~~~~~~~------~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~- 367 (456)
T KOG0266|consen 298 P---DGNLLVSASYDGTIRVWDLETGSKLCLKL------LSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK- 367 (456)
T ss_pred C---CCCEEEEcCCCccEEEEECCCCceeeeec------ccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCc-
Confidence 9 89999999999999999999998 4444 344544 48999999999966 6777764 89998653
Q ss_pred cccccCccccCCCCCCeEEecCCcc--cEEEEEEecCCCcEEEEEECCCeEEEEecCCCCCCcc
Q 000685 346 SALTRPLCELSSLVPPQVLAHHKKL--RVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVA 407 (1352)
Q Consensus 346 ~~~~~~l~~~~~~~~~~~l~~h~~~--~V~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~i~ 407 (1352)
....+.+|... .+.+...++ ++.++.+|+.|+.| .+||..+...+.
T Consensus 368 --------------~~~~~~~~~~~~~~~~~~~~~~-~~~~i~sg~~d~~v-~~~~~~s~~~~~ 415 (456)
T KOG0266|consen 368 --------------SVGTYTGHSNLVRCIFSPTLST-GGKLIYSGSEDGSV-YVWDSSSGGILQ 415 (456)
T ss_pred --------------ceeeecccCCcceeEecccccC-CCCeEEEEeCCceE-EEEeCCccchhh
Confidence 23445555542 334444455 68889999999998 799988654443
No 49
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.91 E-value=5.7e-22 Score=259.25 Aligned_cols=275 Identities=18% Similarity=0.225 Sum_probs=206.9
Q ss_pred EcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCcc--cc--c-cccccCCC
Q 000685 92 FYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRG--RD--I-PKQELDNK 165 (1352)
Q Consensus 92 F~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~--~~--i-~~~~~h~~ 165 (1352)
|.+|.+++|+....+............|...|.+++|+++++ ++++|+.|+.+ +||...... .. . .....+..
T Consensus 455 ~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 533 (793)
T PLN00181 455 FLEGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRS 533 (793)
T ss_pred hhhhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCcccccccccccceEEecccC
Confidence 346778888877654322111122233588899999999997 89999999988 667643210 00 0 01122356
Q ss_pred CeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCC
Q 000685 166 SLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSAD 245 (1352)
Q Consensus 166 ~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~ 245 (1352)
.|.+++|+| .++.+|++++.||+|++||+.+++.+..+. +|.+.|++++| .+.++.+|+||+.||+|++||++
T Consensus 534 ~v~~l~~~~----~~~~~las~~~Dg~v~lWd~~~~~~~~~~~-~H~~~V~~l~~--~p~~~~~L~Sgs~Dg~v~iWd~~ 606 (793)
T PLN00181 534 KLSGICWNS----YIKSQVASSNFEGVVQVWDVARSQLVTEMK-EHEKRVWSIDY--SSADPTLLASGSDDGSVKLWSIN 606 (793)
T ss_pred ceeeEEecc----CCCCEEEEEeCCCeEEEEECCCCeEEEEec-CCCCCEEEEEE--cCCCCCEEEEEcCCCEEEEEECC
Confidence 789999953 357899999999999999999999888886 99999999983 23578999999999999999999
Q ss_pred CCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCe-EEEEecCCCcccccCCceeEEEeCC
Q 000685 246 HGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK-ELRRIKPVPKLACHSVASWCHPRAP 324 (1352)
Q Consensus 246 tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~-~l~~~~~~~~l~~hs~~V~svafsp 324 (1352)
++..+.. +..| ..|.++.|++ .++.+|++|+.|+.|++||+++++ .+.. +.+|...|+++.|.+
T Consensus 607 ~~~~~~~------~~~~-~~v~~v~~~~--~~g~~latgs~dg~I~iwD~~~~~~~~~~------~~~h~~~V~~v~f~~ 671 (793)
T PLN00181 607 QGVSIGT------IKTK-ANICCVQFPS--ESGRSLAFGSADHKVYYYDLRNPKLPLCT------MIGHSKTVSYVRFVD 671 (793)
T ss_pred CCcEEEE------EecC-CCeEEEEEeC--CCCCEEEEEeCCCeEEEEECCCCCccceE------ecCCCCCEEEEEEeC
Confidence 8876554 3433 5799999976 378999999999999999998765 3333 578999999999985
Q ss_pred CCCEEEEecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCC
Q 000685 325 NLDILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1352)
Q Consensus 325 dg~lLS~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~ 401 (1352)
...+++++.|++ |||+..... .....++..+.+|.. .+.++.|++ ++.+|++|+.||.| ++|+..
T Consensus 672 ~~~lvs~s~D~~ikiWd~~~~~~---------~~~~~~l~~~~gh~~-~i~~v~~s~-~~~~lasgs~D~~v-~iw~~~ 738 (793)
T PLN00181 672 SSTLVSSSTDNTLKLWDLSMSIS---------GINETPLHSFMGHTN-VKNFVGLSV-SDGYIATGSETNEV-FVYHKA 738 (793)
T ss_pred CCEEEEEECCCEEEEEeCCCCcc---------ccCCcceEEEcCCCC-CeeEEEEcC-CCCEEEEEeCCCEE-EEEECC
Confidence 555778999996 899874310 001134556777876 899999999 56789999999997 799865
No 50
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.6e-20 Score=221.49 Aligned_cols=459 Identities=16% Similarity=0.201 Sum_probs=291.0
Q ss_pred eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE-EeccCccceEEec-cccceeEecccccCCCccc
Q 000685 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYE-LKAGGVDQRRLVG-AKLEKLAEGELEHKGKPTE 80 (1352)
Q Consensus 3 ~l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t-~~~~~~~~i~~vs-~dg~~Lasgs~d~~g~~l~ 80 (1352)
|+|.+.-....|++|||+.+.+.||.+-.||.|-||++..+-.... +..+....+..++ .++.+|.+.+
T Consensus 17 rcrf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g--------- 87 (691)
T KOG2048|consen 17 RCRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSG--------- 87 (691)
T ss_pred EEEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeec---------
Confidence 3556666678999999999999999999999999999998755444 4433333344444 2333333332
Q ss_pred cccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEE-EeeCCccccccc
Q 000685 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPK 159 (1352)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~w-Dl~t~~~~~i~~ 159 (1352)
.+|.|.-||+.+.+..+ ......+.|++++.+|.+. .+++||+||.+.. +...++...-..
T Consensus 88 ------------~sg~i~EwDl~~lk~~~-----~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~ 149 (691)
T KOG2048|consen 88 ------------LSGSITEWDLHTLKQKY-----NIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRS 149 (691)
T ss_pred ------------CCceEEEEecccCceeE-----EecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEee
Confidence 48999999999987652 3333467899999999997 8999999995533 555544333333
Q ss_pred cccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEe---cCCCCCeeEEEEeeeCCCCCEEEEEeCC
Q 000685 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYT---GGHKGSISCLMTFMASSGEALLVSGGSD 236 (1352)
Q Consensus 160 ~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~---~gH~~~V~slawf~~s~dg~~LaSgS~D 236 (1352)
+....+.|.|+.| ++++..|+.|+.||.|++||..++..+.... .+-...-.++.|-...-....|++|..-
T Consensus 150 l~rq~sRvLslsw-----~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~ 224 (691)
T KOG2048|consen 150 LMRQKSRVLSLSW-----NPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSA 224 (691)
T ss_pred cccccceEEEEEe-----cCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCC
Confidence 4455789999999 6789999999999999999999887665221 0112211222243222245689999999
Q ss_pred CcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeE-EEEecCCCcccccCC
Q 000685 237 GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKE-LRRIKPVPKLACHSV 315 (1352)
Q Consensus 237 GtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~-l~~~~~~~~l~~hs~ 315 (1352)
|+|.+||...+..+.. ...|...|.+++..+ ++++++++|.|+.|..|...+... +-. ......|..
T Consensus 225 G~V~FWd~~~gTLiqS------~~~h~adVl~Lav~~---~~d~vfsaGvd~~ii~~~~~~~~~~wv~---~~~r~~h~h 292 (691)
T KOG2048|consen 225 GTVTFWDSIFGTLIQS------HSCHDADVLALAVAD---NEDRVFSAGVDPKIIQYSLTTNKSEWVI---NSRRDLHAH 292 (691)
T ss_pred ceEEEEcccCcchhhh------hhhhhcceeEEEEcC---CCCeEEEccCCCceEEEEecCCccceee---eccccCCcc
Confidence 9999999999987765 578999999999998 789999999999999998776543 222 123467888
Q ss_pred ceeEEEeCCCCCEEEEecCCeEEeccCCccc-----------------------------ccccCccccCCC--------
Q 000685 316 ASWCHPRAPNLDILTCVKDSHIWAIEHPTYS-----------------------------ALTRPLCELSSL-------- 358 (1352)
Q Consensus 316 ~V~svafspdg~lLS~s~Dg~IWDi~t~~~~-----------------------------~~~~~l~~~~~~-------- 358 (1352)
.|.+++..++ .+++||.|..|.-...+... .....+|.+...
T Consensus 293 dvrs~av~~~-~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~ 371 (691)
T KOG2048|consen 293 DVRSMAVIEN-ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNY 371 (691)
T ss_pred cceeeeeecc-eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccCh
Confidence 8889998877 56688888764222111100 001111111111
Q ss_pred CCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCCCCCcc-----ccCCCCCCCCceEEEEecCeEEE---
Q 000685 359 VPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVA-----PLPTPSGSRDHSAVYIVERELKL--- 430 (1352)
Q Consensus 359 ~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~i~-----~l~~~s~s~~~~~~~~~~~~lkl--- 430 (1352)
..+..+.......|.|-+.+| ++++|+.++-..+ +++.+...+.+. ..+... .....+.|..++.+.+
T Consensus 372 ~~Llkl~~k~~~nIs~~aiSP-dg~~Ia~st~~~~--~iy~L~~~~~vk~~~v~~~~~~~-~~a~~i~ftid~~k~~~~s 447 (691)
T KOG2048|consen 372 IHLLKLFTKEKENISCAAISP-DGNLIAISTVSRT--KIYRLQPDPNVKVINVDDVPLAL-LDASAISFTIDKNKLFLVS 447 (691)
T ss_pred hhheeeecCCccceeeeccCC-CCCEEEEeeccce--EEEEeccCcceeEEEeccchhhh-ccceeeEEEecCceEEEEe
Confidence 111122222334799999999 7888999886555 455444322111 011111 0112233444444221
Q ss_pred ------EEeeeccCCCCCCCCCcccccCCcccCCCchhhhhhhccccccccCCCCCccEEEEcCCCCEEEEEECCCCcEE
Q 000685 431 ------VNFQLSSAANPSLGNNGSLSETGRLKGDLPDALQIKQIKKHISTPVPHDSYSILSVSSSGKYLAVVWPDIPYFS 504 (1352)
Q Consensus 431 ------~~fq~~~~~n~~~g~~~~~s~~G~~~~~~~~~l~v~~~~r~i~t~~~~e~~s~l~~SpdGrylavv~~~~g~y~ 504 (1352)
..|++.. ..++++. .++.....+..+.+.+|++|.||++.. ..+.+.
T Consensus 448 ~~~~~le~~el~~--------------------ps~kel~------~~~~~~~~~~I~~l~~SsdG~yiaa~~-t~g~I~ 500 (691)
T KOG2048|consen 448 KNIFSLEEFELET--------------------PSFKELK------SIQSQAKCPSISRLVVSSDGNYIAAIS-TRGQIF 500 (691)
T ss_pred cccceeEEEEecC--------------------cchhhhh------ccccccCCCcceeEEEcCCCCEEEEEe-ccceEE
Confidence 1111110 1112211 011112334556899999999997776 677888
Q ss_pred EEEeCCceEee-----ccceeEEEecc-CCCeEEEEecc
Q 000685 505 VYKVSDWSIVD-----SGSARLLAWDT-CRDRFAILESA 537 (1352)
Q Consensus 505 Iy~i~~~~~i~-----~G~~~~~aWs~-~~~~fAvl~~~ 537 (1352)
+|++...+... .-.++..++++ ..++.++..++
T Consensus 501 v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~ 539 (691)
T KOG2048|consen 501 VYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSN 539 (691)
T ss_pred EEEcccceeecchhccCcceeeeeccccccCcEEEEecC
Confidence 99987643311 33466666663 57777777654
No 51
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.91 E-value=8e-23 Score=221.48 Aligned_cols=262 Identities=18% Similarity=0.191 Sum_probs=209.1
Q ss_pred cccCCCCeeeeeecCCCCeEEEEEecCcEEEEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEE
Q 000685 116 VSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRV 195 (1352)
Q Consensus 116 ~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrI 195 (1352)
..+|.+.|+.+.|+|+|. +|++|+.|+.|+++-..+.++..-..++|.+.|+.+.| ..|++.|++++.|.+|+.
T Consensus 43 l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~-----~~d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHG-----MRDGSHILSCGTDKTVRG 116 (338)
T ss_pred cCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccceeeeccccceeEeeee-----ccCCCEEEEecCCceEEE
Confidence 344589999999999997 99999999988553334455556667899999999999 779999999999999999
Q ss_pred EECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccC
Q 000685 196 LSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVM 275 (1352)
Q Consensus 196 WDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~ 275 (1352)
||.+++++++++. +|.+.|+++. ....+..++.||+.||++++||+++..+++.+ .....++++.|..
T Consensus 117 wD~~tG~~~rk~k-~h~~~vNs~~--p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~-------~~kyqltAv~f~d-- 184 (338)
T KOG0265|consen 117 WDAETGKRIRKHK-GHTSFVNSLD--PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF-------ENKYQLTAVGFKD-- 184 (338)
T ss_pred Eecccceeeehhc-cccceeeecC--ccccCCeEEEecCCCceEEEEeecccchhhcc-------ccceeEEEEEecc--
Confidence 9999999999998 9999999986 23445678889999999999999988776652 2345689999987
Q ss_pred CCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCE-EEEecCCe--EEeccCCcccccccCc
Q 000685 276 GGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDI-LTCVKDSH--IWAIEHPTYSALTRPL 352 (1352)
Q Consensus 276 ~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~l-LS~s~Dg~--IWDi~t~~~~~~~~~l 352 (1352)
.+..+.+|+-|+.|++||++....+.. +.||...|+.+..+++|.. ++-+.|.+ +||++...
T Consensus 185 -~s~qv~sggIdn~ikvWd~r~~d~~~~------lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~-------- 249 (338)
T KOG0265|consen 185 -TSDQVISGGIDNDIKVWDLRKNDGLYT------LSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFA-------- 249 (338)
T ss_pred -cccceeeccccCceeeeccccCcceEE------eecccCceeeEEeccCCCccccccccceEEEEEecccC--------
Confidence 788999999999999999999888887 7999999999999999984 58899986 89998421
Q ss_pred cccCCCCCCeEEecCCc---ccEEEEEEecCCCcEEEEEECCCeEEEEecCCCCCCccccCCCCCC
Q 000685 353 CELSSLVPPQVLAHHKK---LRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPLPTPSGS 415 (1352)
Q Consensus 353 ~~~~~~~~~~~l~~h~~---~~V~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~i~~l~~~s~s 415 (1352)
...+++..+.++.. ......+|+| ++..+..|+.|..+ .+||...+..+-.+|-..++
T Consensus 250 ---p~~R~v~if~g~~hnfeknlL~cswsp-~~~~i~ags~dr~v-yvwd~~~r~~lyklpGh~gs 310 (338)
T KOG0265|consen 250 ---PSQRCVKIFQGHIHNFEKNLLKCSWSP-NGTKITAGSADRFV-YVWDTTSRRILYKLPGHYGS 310 (338)
T ss_pred ---CCCceEEEeecchhhhhhhcceeeccC-CCCccccccccceE-EEeecccccEEEEcCCccee
Confidence 11222334443321 1345678999 67889999999998 69998876555444443333
No 52
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=3.1e-23 Score=231.48 Aligned_cols=249 Identities=17% Similarity=0.254 Sum_probs=203.1
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec--cccceeEecccccCCCcccc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEA 81 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~~ 81 (1352)
.+++.||...|..+.||||.++|++|+.|..+.+||..+|.+...+..++...+.+++ ||+..+++|+
T Consensus 262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs---------- 331 (519)
T KOG0293|consen 262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGS---------- 331 (519)
T ss_pred eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecC----------
Confidence 6899999999999999999999999999999999999999999988866445555555 9999999986
Q ss_pred ccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEE-EeeCCcccccccc
Q 000685 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQ 160 (1352)
Q Consensus 82 l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~w-Dl~t~~~~~i~~~ 160 (1352)
-|+++..||+..+..- .-.+-....|.+++.++||+ ++++.+.|..+++ +..+...+. .
T Consensus 332 -----------~dr~i~~wdlDgn~~~-----~W~gvr~~~v~dlait~Dgk-~vl~v~~d~~i~l~~~e~~~dr~---l 391 (519)
T KOG0293|consen 332 -----------PDRTIIMWDLDGNILG-----NWEGVRDPKVHDLAITYDGK-YVLLVTVDKKIRLYNREARVDRG---L 391 (519)
T ss_pred -----------CCCcEEEecCCcchhh-----cccccccceeEEEEEcCCCc-EEEEEecccceeeechhhhhhhc---c
Confidence 5788999998775321 11222235699999999999 5555556666644 776653332 2
Q ss_pred ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEE
Q 000685 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240 (1352)
Q Consensus 161 ~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVr 240 (1352)
.....+|+++.. |.+++++++--.+..|++||++.++.++++. ||...-.-+..++--.+..+++|||.|+.|+
T Consensus 392 ise~~~its~~i-----S~d~k~~LvnL~~qei~LWDl~e~~lv~kY~-Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvy 465 (519)
T KOG0293|consen 392 ISEEQPITSFSI-----SKDGKLALVNLQDQEIHLWDLEENKLVRKYF-GHKQGHFIIRSCFGGGNDKFIASGSEDSKVY 465 (519)
T ss_pred ccccCceeEEEE-----cCCCcEEEEEcccCeeEEeecchhhHHHHhh-cccccceEEEeccCCCCcceEEecCCCceEE
Confidence 334568999999 8899999999999999999999999999987 8977655554443455668999999999999
Q ss_pred EEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECC
Q 000685 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV 296 (1352)
Q Consensus 241 VWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~ 296 (1352)
||+..+++.+.. +.||...|++++|+|. +..+++++|+||+||||...
T Consensus 466 IWhr~sgkll~~------LsGHs~~vNcVswNP~--~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 466 IWHRISGKLLAV------LSGHSKTVNCVSWNPA--DPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred EEEccCCceeEe------ecCCcceeeEEecCCC--CHHHhhccCCCCeEEEecCC
Confidence 999999987665 8999999999999994 88999999999999999865
No 53
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.90 E-value=2.1e-22 Score=247.08 Aligned_cols=276 Identities=20% Similarity=0.321 Sum_probs=231.3
Q ss_pred EecC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEecc--ccceeEecccccCCCccccc
Q 000685 6 AFRP-TNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGA--KLEKLAEGELEHKGKPTEAM 82 (1352)
Q Consensus 6 ~L~g-Hs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~--dg~~Lasgs~d~~g~~l~~l 82 (1352)
.+.+ |...|.+..|+ +.++++++.|++|++||..++..+..--.+|.+.+..+.- .+.+|++|+
T Consensus 202 ~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS----------- 268 (537)
T KOG0274|consen 202 VLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGS----------- 268 (537)
T ss_pred eecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEe-----------
Confidence 3443 66789999999 5689999999999999999999998833488888888873 377888886
Q ss_pred cCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccccc
Q 000685 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQE 161 (1352)
Q Consensus 83 ~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~ 161 (1352)
.|.++|+||..++.|.+ ...+| .+.+.++...+ ..+++|+.|.++ +|++.++.+ +....
T Consensus 269 ----------~D~t~rvWd~~sg~C~~----~l~gh-~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~--l~l~~ 328 (537)
T KOG0274|consen 269 ----------TDKTERVWDCSTGECTH----SLQGH-TSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGAC--LNLLR 328 (537)
T ss_pred ----------cCCcEEeEecCCCcEEE----EecCC-CceEEEEEccC---ceEeeccCCceEEEEeccCcce--EEEec
Confidence 68999999999999973 44555 88888887665 367888999988 679988765 44566
Q ss_pred cCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEE
Q 000685 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1352)
Q Consensus 162 ~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrV 241 (1352)
+|...|+|+.. ++.++++|+.|++|++||..++++++.+. ||.+.|.++. +... ..+++|+.|++|++
T Consensus 329 ~h~~~V~~v~~-------~~~~lvsgs~d~~v~VW~~~~~~cl~sl~-gH~~~V~sl~---~~~~-~~~~Sgs~D~~Ikv 396 (537)
T KOG0274|consen 329 GHTGPVNCVQL-------DEPLLVSGSYDGTVKVWDPRTGKCLKSLS-GHTGRVYSLI---VDSE-NRLLSGSLDTTIKV 396 (537)
T ss_pred cccccEEEEEe-------cCCEEEEEecCceEEEEEhhhceeeeeec-CCcceEEEEE---ecCc-ceEEeeeeccceEe
Confidence 69999999999 58999999999999999999999999998 8999999995 3443 89999999999999
Q ss_pred EeCCCC-CccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccc-cCCceeE
Q 000685 242 WSADHG-QDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLAC-HSVASWC 319 (1352)
Q Consensus 242 WDl~tg-~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~-hs~~V~s 319 (1352)
||+++. +++.. +.+|..-|..+.+. +++|++++.|++|++||..++++++.+ .+ |...|++
T Consensus 397 Wdl~~~~~c~~t------l~~h~~~v~~l~~~-----~~~Lvs~~aD~~Ik~WD~~~~~~~~~~------~~~~~~~v~~ 459 (537)
T KOG0274|consen 397 WDLRTKRKCIHT------LQGHTSLVSSLLLR-----DNFLVSSSADGTIKLWDAEEGECLRTL------EGRHVGGVSA 459 (537)
T ss_pred ecCCchhhhhhh------hcCCcccccccccc-----cceeEeccccccEEEeecccCceeeee------ccCCcccEEE
Confidence 999998 66554 79999999887774 579999999999999999999999984 44 6788888
Q ss_pred EEeCCCCCEEEEecCCe--EEeccCCc
Q 000685 320 HPRAPNLDILTCVKDSH--IWAIEHPT 344 (1352)
Q Consensus 320 vafspdg~lLS~s~Dg~--IWDi~t~~ 344 (1352)
+.+. +..+++++.|++ +||++++.
T Consensus 460 l~~~-~~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 460 LALG-KEEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred eecC-cceEEEEecCCeeEEEecccCc
Confidence 8877 445778889996 89998763
No 54
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=5.5e-21 Score=217.97 Aligned_cols=328 Identities=16% Similarity=0.216 Sum_probs=232.7
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCC--------cEEEEECCCCcEEEEEeccCccceEEec----cccceeEecc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASD--------HVSVWNWEHRQVIYELKAGGVDQRRLVG----AKLEKLAEGE 71 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG--------~VrVWDl~tg~~i~t~~~~~~~~i~~vs----~dg~~Lasgs 71 (1352)
.|.+.||++.|.|++.||+.-.+++|-..| .|||||..+-..++.+-.. ..++.+++ ..|..|..-+
T Consensus 97 Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f-~~GV~~vaFsk~~~G~~l~~vD 175 (626)
T KOG2106|consen 97 QRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFF-DRGVTCVAFSKINGGSLLCAVD 175 (626)
T ss_pred cccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccc-cccceeeeecccCCCceEEEec
Confidence 567899999999999999988898875544 5999997766655555422 22333332 2233333222
Q ss_pred cccCCCccccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEEEeeC
Q 000685 72 LEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVT 151 (1352)
Q Consensus 72 ~d~~g~~l~~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl~t 151 (1352)
.. .+..+.+||+..+.... ........|....|+|.++.++++++...+.+|++..
T Consensus 176 ~s-------------------~~h~lSVWdWqk~~~~~-----~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~ 231 (626)
T KOG2106|consen 176 DS-------------------NPHMLSVWDWQKKAKLG-----PVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRG 231 (626)
T ss_pred CC-------------------CccccchhhchhhhccC-----cceeccceEEEEEeccCCCcEEEEeCCceEEEEEccC
Confidence 11 35678899998775531 1222245688899999999899999999999998876
Q ss_pred Ccccc-cccc-ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCE
Q 000685 152 MRGRD-IPKQ-ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEAL 229 (1352)
Q Consensus 152 ~~~~~-i~~~-~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~ 229 (1352)
+.... ...+ +.....|.|++| .++|+ +++|.++|.|.||+..+.+..+... .|.+.|.+++ .-.+|.
T Consensus 232 ~~l~k~~~~fek~ekk~Vl~v~F-----~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~---~lr~Gt- 300 (626)
T KOG2106|consen 232 GSLVKRQGIFEKREKKFVLCVTF-----LENGD-VITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLC---MLRDGT- 300 (626)
T ss_pred CceEEEeeccccccceEEEEEEE-----cCCCC-EEeecCCceEEEEeCCCceEEeEee-ecCCceEEEE---EecCcc-
Confidence 64321 1112 223478999999 45665 8899999999999999888888877 9999999998 456665
Q ss_pred EEEEeCCCcEEEEeCCCCCc-----------------------c---------ceecc--cccccccccceEEEEeeccC
Q 000685 230 LVSGGSDGLLILWSADHGQD-----------------------S---------RELVP--KLSLKAHDGGVVAVELSRVM 275 (1352)
Q Consensus 230 LaSgS~DGtVrVWDl~tg~~-----------------------~---------~~~~~--~~~l~gH~~~V~slafsp~~ 275 (1352)
|+||+.|+.|..||-.-.+. + .++.. .....+|.+..+.++.+|
T Consensus 301 llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-- 378 (626)
T KOG2106|consen 301 LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-- 378 (626)
T ss_pred EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC--
Confidence 55599999999998421100 0 00111 112367889999999999
Q ss_pred CCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEEEEecCCe--EEeccCCcccccccCcc
Q 000685 276 GGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSH--IWAIEHPTYSALTRPLC 353 (1352)
Q Consensus 276 ~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lLS~s~Dg~--IWDi~t~~~~~~~~~l~ 353 (1352)
+.++++|++.|+.+++|+ ..+...+. --..++.|+.|+|.|.++.|...|+ +.|..+..
T Consensus 379 -s~~q~~T~gqdk~v~lW~--~~k~~wt~-------~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~--------- 439 (626)
T KOG2106|consen 379 -SKNQLLTCGQDKHVRLWN--DHKLEWTK-------IIEDPAECADFHPSGVVAVGTATGRWFVLDTETQD--------- 439 (626)
T ss_pred -ChhheeeccCcceEEEcc--CCceeEEE-------EecCceeEeeccCcceEEEeeccceEEEEecccce---------
Confidence 789999999999999999 33443331 1234556999999995557778887 56666431
Q ss_pred ccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEe
Q 000685 354 ELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEF 398 (1352)
Q Consensus 354 ~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriW 398 (1352)
..++...+ ..++++.|+| ++.++|.|+.|+.| .+|
T Consensus 440 -------lv~~~~d~-~~ls~v~ysp-~G~~lAvgs~d~~i-yiy 474 (626)
T KOG2106|consen 440 -------LVTIHTDN-EQLSVVRYSP-DGAFLAVGSHDNHI-YIY 474 (626)
T ss_pred -------eEEEEecC-CceEEEEEcC-CCCEEEEecCCCeE-EEE
Confidence 33444453 4899999999 68889999999997 355
No 55
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.89 E-value=3.5e-22 Score=245.01 Aligned_cols=245 Identities=20% Similarity=0.301 Sum_probs=212.5
Q ss_pred eEE-ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccc
Q 000685 4 LKA-FRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAM 82 (1352)
Q Consensus 4 l~~-L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l 82 (1352)
+.. |.||.+.|++++|..-+..|++|+.|.+++|||+.+|+|.+.+. +|.+.+.++.-....+++|+
T Consensus 241 i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~-gh~stv~~~~~~~~~~~sgs----------- 308 (537)
T KOG0274|consen 241 ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQ-GHTSSVRCLTIDPFLLVSGS----------- 308 (537)
T ss_pred EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEec-CCCceEEEEEccCceEeecc-----------
Confidence 344 99999999999999878899999999999999999999999998 77788888887777777765
Q ss_pred cCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccccc
Q 000685 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQE 161 (1352)
Q Consensus 83 ~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~ 161 (1352)
.|.+|++|++.++.++ ....+ |...|+++..+ +. ++++|+.|+.| +||+.++++ +....
T Consensus 309 ----------~D~tVkVW~v~n~~~l----~l~~~-h~~~V~~v~~~--~~-~lvsgs~d~~v~VW~~~~~~c--l~sl~ 368 (537)
T KOG0274|consen 309 ----------RDNTVKVWDVTNGACL----NLLRG-HTGPVNCVQLD--EP-LLVSGSYDGTVKVWDPRTGKC--LKSLS 368 (537)
T ss_pred ----------CCceEEEEeccCcceE----EEecc-ccccEEEEEec--CC-EEEEEecCceEEEEEhhhcee--eeeec
Confidence 6899999999999887 34444 59999999998 44 89999999977 789997765 66788
Q ss_pred cCCCCeEEEEEeeccccCCC-CEEEEEECCCcEEEEECCCC-eEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcE
Q 000685 162 LDNKSLVCMEFLSRSAVGDV-PLVAFGSSDGVIRVLSMISW-KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1352)
Q Consensus 162 ~h~~~V~~vaf~P~s~Spdg-~~LasGs~DGtIrIWDl~t~-~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtV 239 (1352)
+|..+|.++.+ ++ .++++|+.|++|++||+++. +++..+. +|...|+++. ..+++|++++.|++|
T Consensus 369 gH~~~V~sl~~-------~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~-~h~~~v~~l~-----~~~~~Lvs~~aD~~I 435 (537)
T KOG0274|consen 369 GHTGRVYSLIV-------DSENRLLSGSLDTTIKVWDLRTKRKCIHTLQ-GHTSLVSSLL-----LRDNFLVSSSADGTI 435 (537)
T ss_pred CCcceEEEEEe-------cCcceEEeeeeccceEeecCCchhhhhhhhc-CCcccccccc-----cccceeEeccccccE
Confidence 99999999988 44 89999999999999999999 8999887 9999997774 367899999999999
Q ss_pred EEEeCCCCCccceecccccccc-cccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEe
Q 000685 240 ILWSADHGQDSRELVPKLSLKA-HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRI 304 (1352)
Q Consensus 240 rVWDl~tg~~~~~~~~~~~l~g-H~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~ 304 (1352)
++||..++++++. +.+ |...|..+++. ...+++++.||++++||++++++.+.+
T Consensus 436 k~WD~~~~~~~~~------~~~~~~~~v~~l~~~-----~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 436 KLWDAEEGECLRT------LEGRHVGGVSALALG-----KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred EEeecccCceeee------eccCCcccEEEeecC-----cceEEEEecCCeeEEEecccCchhhhh
Confidence 9999999998776 455 67888888874 368999999999999999999988764
No 56
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.89 E-value=3.7e-21 Score=214.23 Aligned_cols=242 Identities=24% Similarity=0.363 Sum_probs=199.1
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCcccccc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~ 83 (1352)
+..+.+|...+.++.|+|++++|++++.||.|++||+.+++.+..+..+
T Consensus 44 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~------------------------------- 92 (289)
T cd00200 44 LRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGH------------------------------- 92 (289)
T ss_pred EEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEecc-------------------------------
Confidence 4567889999999999999999999999999999999876554444311
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCcccccccccc
Q 000685 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1352)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~ 162 (1352)
...+.++.|+++++ ++++++.++.+ +||..+++. ......
T Consensus 93 ------------------------------------~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~--~~~~~~ 133 (289)
T cd00200 93 ------------------------------------TSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKC--LTTLRG 133 (289)
T ss_pred ------------------------------------CCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcEE--EEEecc
Confidence 33577888999876 88888856665 678876543 333456
Q ss_pred CCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEE
Q 000685 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1352)
Q Consensus 163 h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVW 242 (1352)
|...|.++.| ++++.++++++.|+.|++||+++++.+..+. .|...+.++. ++++++.+++++.|+.|++|
T Consensus 134 ~~~~i~~~~~-----~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~---~~~~~~~l~~~~~~~~i~i~ 204 (289)
T cd00200 134 HTDWVNSVAF-----SPDGTFVASSSQDGTIKLWDLRTGKCVATLT-GHTGEVNSVA---FSPDGEKLLSSSSDGTIKLW 204 (289)
T ss_pred CCCcEEEEEE-----cCcCCEEEEEcCCCcEEEEEccccccceeEe-cCccccceEE---ECCCcCEEEEecCCCcEEEE
Confidence 8889999999 5678888888889999999999888888887 8989999998 68889899999999999999
Q ss_pred eCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEe
Q 000685 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPR 322 (1352)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svaf 322 (1352)
|++.++.... +..|...+.++.|+| ++.++++++.|+.|++||+.+++.... +..|...+.++.|
T Consensus 205 d~~~~~~~~~------~~~~~~~i~~~~~~~---~~~~~~~~~~~~~i~i~~~~~~~~~~~------~~~~~~~i~~~~~ 269 (289)
T cd00200 205 DLSTGKCLGT------LRGHENGVNSVAFSP---DGYLLASGSEDGTIRVWDLRTGECVQT------LSGHTNSVTSLAW 269 (289)
T ss_pred ECCCCceecc------hhhcCCceEEEEEcC---CCcEEEEEcCCCcEEEEEcCCceeEEE------ccccCCcEEEEEE
Confidence 9998765543 557888999999999 678888888899999999998888777 4578889999999
Q ss_pred CCCCCEE-EEecCCe--EEe
Q 000685 323 APNLDIL-TCVKDSH--IWA 339 (1352)
Q Consensus 323 spdg~lL-S~s~Dg~--IWD 339 (1352)
++++.++ +++.|+. +|+
T Consensus 270 ~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 270 SPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCCCCEEEEecCCCeEEecC
Confidence 9997755 7888885 675
No 57
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.89 E-value=1.1e-22 Score=232.04 Aligned_cols=247 Identities=19% Similarity=0.265 Sum_probs=202.8
Q ss_pred ccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcE
Q 000685 115 AVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVI 193 (1352)
Q Consensus 115 ~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtI 193 (1352)
..+| ...|+++.|.|..-++|++++.|+.| +|++.. ..+++.++.+|..+|..+.| +.+|..+++++.|+.|
T Consensus 210 ~~gH-~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~-~~~~lrtf~gH~k~Vrd~~~-----s~~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 210 LSGH-TKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD-DRRCLRTFKGHRKPVRDASF-----NNCGTSFLSASFDRFL 282 (503)
T ss_pred ccCC-ccccchhhhccceeeEEEecCCCceEEEEEEec-Ccceehhhhcchhhhhhhhc-----cccCCeeeeeecceee
Confidence 3444 88899999999444599999999998 677765 34568889999999999999 7899999999999999
Q ss_pred EEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCC-CEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEee
Q 000685 194 RVLSMISWKLVRRYTGGHKGSISCLMTFMASSGE-ALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELS 272 (1352)
Q Consensus 194 rIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg-~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafs 272 (1352)
++||.++|+++.++. ....++|+. ++|++ +.|++|+.|+.|+.||+++++.+++ +..|-+.|+.+.|-
T Consensus 283 KlwDtETG~~~~~f~--~~~~~~cvk---f~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe------Yd~hLg~i~~i~F~ 351 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFH--LDKVPTCVK---FHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE------YDRHLGAILDITFV 351 (503)
T ss_pred eeeccccceEEEEEe--cCCCceeee---cCCCCCcEEEEecCCCcEEEEeccchHHHHH------HHhhhhheeeeEEc
Confidence 999999999999885 445778887 67777 8999999999999999999997776 57788999999999
Q ss_pred ccCCCCCEEEEEECCCcEEEEECCCCeEEEEe--------------------------------cC--------CCcccc
Q 000685 273 RVMGGSPQLITIGADKTLAIWDTVSFKELRRI--------------------------------KP--------VPKLAC 312 (1352)
Q Consensus 273 p~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~--------------------------------~~--------~~~l~~ 312 (1352)
+ ++.++++.++|++++||+.+....++.+ .. ...+.|
T Consensus 352 ~---~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feG 428 (503)
T KOG0282|consen 352 D---EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEG 428 (503)
T ss_pred c---CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcc
Confidence 9 8999999999999999998744322111 10 123467
Q ss_pred cCCc--eeEEEeCCCCCEE-EEecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEE
Q 000685 313 HSVA--SWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVAT 387 (1352)
Q Consensus 313 hs~~--V~svafspdg~lL-S~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLat 387 (1352)
|... -..+.|||||.+| +|..||+ +||.++.+ .+..+..|.. .+..+.|||.....+||
T Consensus 429 h~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k---------------l~~~lkah~~-~ci~v~wHP~e~Skvat 492 (503)
T KOG0282|consen 429 HSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK---------------LVSKLKAHDQ-PCIGVDWHPVEPSKVAT 492 (503)
T ss_pred eeccCceeeEEEcCCCCeEEeecCCccEEEeechhhh---------------hhhccccCCc-ceEEEEecCCCcceeEe
Confidence 7653 3478899999976 7889997 79988642 2456667755 89999999999999999
Q ss_pred EECCCeEEEEec
Q 000685 388 GTNVGVIISEFD 399 (1352)
Q Consensus 388 Gs~DG~IlriWd 399 (1352)
++.||.| ++|+
T Consensus 493 ~~w~G~I-kiwd 503 (503)
T KOG0282|consen 493 CGWDGLI-KIWD 503 (503)
T ss_pred cccCcee-EecC
Confidence 9999998 8996
No 58
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.89 E-value=8.3e-22 Score=219.03 Aligned_cols=260 Identities=16% Similarity=0.225 Sum_probs=204.9
Q ss_pred cCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCC--eEEEEEecCcEEE-EEeeCCc--cccccccccCCCCe
Q 000685 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGR--HFLVICCVNKAIF-LDLVTMR--GRDIPKQELDNKSL 167 (1352)
Q Consensus 93 ~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~--~lLasgs~D~~I~-wDl~t~~--~~~i~~~~~h~~~V 167 (1352)
+||.+|+||...... ....+| .+.|.+++|.-..+ ..+++++.|++++ |-++.++ ...+....+|...|
T Consensus 123 YDg~~riWd~~Gk~~-----~~~~Gh-t~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V 196 (423)
T KOG0313|consen 123 YDGTSRIWDLKGKSI-----KTIVGH-TGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSV 196 (423)
T ss_pred cCCeeEEEecCCceE-----EEEecC-CcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccce
Confidence 799999999876533 345555 88899888754333 2699999999994 4444333 33344456999999
Q ss_pred EEEEEeeccccCCCCEEEEEECCCcEEEEECCC-------------------------CeEEEEEecCCCCCeeEEEEee
Q 000685 168 VCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS-------------------------WKLVRRYTGGHKGSISCLMTFM 222 (1352)
Q Consensus 168 ~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t-------------------------~~~i~~l~~gH~~~V~slawf~ 222 (1352)
-|+.. .++|..+++||.|.+|+||+..+ +.++..+. ||...|.++.|.
T Consensus 197 ~sVsv-----~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~-GHt~~Vs~V~w~- 269 (423)
T KOG0313|consen 197 DSVSV-----DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE-GHTEPVSSVVWS- 269 (423)
T ss_pred eEEEe-----cCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec-ccccceeeEEEc-
Confidence 99999 67999999999999999999321 12344454 999999999863
Q ss_pred eCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCe--E
Q 000685 223 ASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK--E 300 (1352)
Q Consensus 223 ~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~--~ 300 (1352)
+...+.|+|.|.+|+.||+.++.+..+ +. .....+++.++| ...+|++||.|+.+++||-+++. .
T Consensus 270 ---d~~v~yS~SwDHTIk~WDletg~~~~~------~~-~~ksl~~i~~~~---~~~Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 270 ---DATVIYSVSWDHTIKVWDLETGGLKST------LT-TNKSLNCISYSP---LSKLLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred ---CCCceEeecccceEEEEEeecccceee------ee-cCcceeEeeccc---ccceeeecCCCCceeecCCCCCCCce
Confidence 377899999999999999999987654 22 345689999999 78999999999999999998764 2
Q ss_pred EEEecCCCcccccCCceeEEEeCCCCC--EEEEecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEE
Q 000685 301 LRRIKPVPKLACHSVASWCHPRAPNLD--ILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMV 376 (1352)
Q Consensus 301 l~~~~~~~~l~~hs~~V~svafspdg~--lLS~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la 376 (1352)
+. ..+.+|.+.|.++.|+|... +++++.|++ +||+++.. .++..+.+|.+ +|.++.
T Consensus 337 v~-----~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k--------------~plydI~~h~D-Kvl~vd 396 (423)
T KOG0313|consen 337 VS-----QSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK--------------APLYDIAGHND-KVLSVD 396 (423)
T ss_pred eE-----EeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC--------------CcceeeccCCc-eEEEEe
Confidence 22 23789999999999999876 558999996 89999642 35677888988 999999
Q ss_pred EecCCCcEEEEEECCCeEEEEecCC
Q 000685 377 AHSLQPHLVATGTNVGVIISEFDPR 401 (1352)
Q Consensus 377 ~sp~~~~lLatGs~DG~IlriWd~~ 401 (1352)
|.. +.+|++|+.|..+ +++...
T Consensus 397 W~~--~~~IvSGGaD~~l-~i~~~~ 418 (423)
T KOG0313|consen 397 WNE--GGLIVSGGADNKL-RIFKGS 418 (423)
T ss_pred ccC--CceEEeccCcceE-EEeccc
Confidence 997 6679999999997 787543
No 59
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.89 E-value=2.7e-22 Score=211.87 Aligned_cols=283 Identities=12% Similarity=0.126 Sum_probs=229.4
Q ss_pred EEecCCCCCEEEEEEcC---CCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEecc--ccceeEecccccCCCcc
Q 000685 5 KAFRPTNDKIVKIQLHP---THPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGA--KLEKLAEGELEHKGKPT 79 (1352)
Q Consensus 5 ~~L~gHs~~V~~lafSP---dg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~--dg~~Lasgs~d~~g~~l 79 (1352)
.+-.||+.+|..++||| +|-+|++++.||.-.+-+-+||.-+.+|. +|.+.++...- +...-+++.
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfe-ghkgavw~~~l~~na~~aasaa-------- 78 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFE-GHKGAVWSATLNKNATRAASAA-------- 78 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeee-ccCcceeeeecCchhhhhhhhc--------
Confidence 45689999999999996 67799999999999999999999999998 66666666552 222233332
Q ss_pred ccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEE-EeeCCcccccc
Q 000685 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIP 158 (1352)
Q Consensus 80 ~~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~w-Dl~t~~~~~i~ 158 (1352)
.|-+-++||.-++..++ .. .|...|.+++|+.|.+ .|++|+.+.++++ |++..+. ...
T Consensus 79 -------------adftakvw~a~tgdelh-----sf-~hkhivk~~af~~ds~-~lltgg~ekllrvfdln~p~A-pp~ 137 (334)
T KOG0278|consen 79 -------------ADFTAKVWDAVTGDELH-----SF-EHKHIVKAVAFSQDSN-YLLTGGQEKLLRVFDLNRPKA-PPK 137 (334)
T ss_pred -------------ccchhhhhhhhhhhhhh-----hh-hhhheeeeEEecccch-hhhccchHHHhhhhhccCCCC-Cch
Confidence 46688999998886653 22 2377899999999997 8999999999976 8876553 334
Q ss_pred ccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCc
Q 000685 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL 238 (1352)
Q Consensus 159 ~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGt 238 (1352)
....|.+.|+.+.|. ...+.|++.++|++||+||.++++.++++. ....|+++. .+++|++|.+ ...+.
T Consensus 138 E~~ghtg~Ir~v~wc-----~eD~~iLSSadd~tVRLWD~rTgt~v~sL~--~~s~VtSlE---vs~dG~ilTi-a~gss 206 (334)
T KOG0278|consen 138 EISGHTGGIRTVLWC-----HEDKCILSSADDKTVRLWDHRTGTEVQSLE--FNSPVTSLE---VSQDGRILTI-AYGSS 206 (334)
T ss_pred hhcCCCCcceeEEEe-----ccCceEEeeccCCceEEEEeccCcEEEEEe--cCCCCccee---eccCCCEEEE-ecCce
Confidence 467899999999994 456678888999999999999999999985 778899997 7899887765 56789
Q ss_pred EEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCcee
Q 000685 239 LILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASW 318 (1352)
Q Consensus 239 VrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~ 318 (1352)
|++||..+-..++.+ .....|.+...+| +...+++|+.|..++.||+.+|..+..+ ..+|.++|.
T Consensus 207 V~Fwdaksf~~lKs~-------k~P~nV~SASL~P---~k~~fVaGged~~~~kfDy~TgeEi~~~-----nkgh~gpVh 271 (334)
T KOG0278|consen 207 VKFWDAKSFGLLKSY-------KMPCNVESASLHP---KKEFFVAGGEDFKVYKFDYNTGEEIGSY-----NKGHFGPVH 271 (334)
T ss_pred eEEeccccccceeec-------cCccccccccccC---CCceEEecCcceEEEEEeccCCceeeec-----ccCCCCceE
Confidence 999999987765542 1334588999999 6789999999999999999999987763 479999999
Q ss_pred EEEeCCCCCEE-EEecCCe--EEeccCC
Q 000685 319 CHPRAPNLDIL-TCVKDSH--IWAIEHP 343 (1352)
Q Consensus 319 svafspdg~lL-S~s~Dg~--IWDi~t~ 343 (1352)
|+.|+|+|.+. +||+||+ ||.+..+
T Consensus 272 cVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 272 CVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred EEEECCCCceeeccCCCceEEEEEecCC
Confidence 99999999955 7899996 7987643
No 60
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.89 E-value=5.3e-22 Score=226.66 Aligned_cols=302 Identities=17% Similarity=0.236 Sum_probs=209.6
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccC
Q 000685 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1352)
Q Consensus 5 ~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~ 84 (1352)
..|.+|+..|.++++.|.|-+|+||+.|.+|++||+....
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMd---------------------------------------- 200 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMD---------------------------------------- 200 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEeccccc----------------------------------------
Confidence 4679999999999999999999999999999999986311
Q ss_pred CceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEEEeeCCc----------c
Q 000685 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMR----------G 154 (1352)
Q Consensus 85 g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl~t~~----------~ 154 (1352)
-..+-+ ..+.-.....|+++.|++.+..+|++.+.....++|-.... .
T Consensus 201 ----------as~~~f------------r~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI 258 (641)
T KOG0772|consen 201 ----------ASMRSF------------RQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYI 258 (641)
T ss_pred ----------ccchhh------------hccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhh
Confidence 000000 00001114468889999999877777777666666533221 1
Q ss_pred ccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCe-EEEEE----ecCCCCCeeEEEEeeeCCCCCE
Q 000685 155 RDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK-LVRRY----TGGHKGSISCLMTFMASSGEAL 229 (1352)
Q Consensus 155 ~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~-~i~~l----~~gH~~~V~slawf~~s~dg~~ 229 (1352)
+.....++|...++|.+|||. +...+++++.||++||||+...+ ....+ ..+..-.++.+. +++++.+
T Consensus 259 ~Dm~nTKGHia~lt~g~whP~----~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~---~nrdg~~ 331 (641)
T KOG0772|consen 259 RDMYNTKGHIAELTCGCWHPD----NKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCA---WNRDGKL 331 (641)
T ss_pred hhhhccCCceeeeeccccccC----cccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeee---cCCCcch
Confidence 133445789999999999873 35679999999999999997542 22222 123344666665 7999999
Q ss_pred EEEEeCCCcEEEEeCCCCCccceeccccccccccc--ceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCe-EEEEecC
Q 000685 230 LVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDG--GVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK-ELRRIKP 306 (1352)
Q Consensus 230 LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~--~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~-~l~~~~~ 306 (1352)
|++|+.||.|.+|+..+....-. ...-.+|.. .|+||.|++ +|++|++-|.|+++++||++..+ ++..+..
T Consensus 332 iAagc~DGSIQ~W~~~~~~v~p~---~~vk~AH~~g~~Itsi~FS~---dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tg 405 (641)
T KOG0772|consen 332 IAAGCLDGSIQIWDKGSRTVRPV---MKVKDAHLPGQDITSISFSY---DGNYLLSRGFDDTLKVWDLRQFKKPLNVRTG 405 (641)
T ss_pred hhhcccCCceeeeecCCcccccc---eEeeeccCCCCceeEEEecc---ccchhhhccCCCceeeeeccccccchhhhcC
Confidence 99999999999999864332111 122367877 899999999 89999999999999999998754 4444322
Q ss_pred CCcccccCCceeEEEeCCCCCEE-EEe------cCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEE
Q 000685 307 VPKLACHSVASWCHPRAPNLDIL-TCV------KDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVA 377 (1352)
Q Consensus 307 ~~~l~~hs~~V~svafspdg~lL-S~s------~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~ 377 (1352)
... ...-+.++|||+.++| +|. ..|. +||..+.. .+..+..... .|..+.|
T Consensus 406 L~t----~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d---------------~v~ki~i~~a-Svv~~~W 465 (641)
T KOG0772|consen 406 LPT----PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD---------------TVYKIDISTA-SVVRCLW 465 (641)
T ss_pred CCc----cCCCCccccCCCceEEEecccccCCCCCceEEEEecccee---------------eEEEecCCCc-eEEEEee
Confidence 111 1233478999999976 443 1123 45544321 1223333333 6888999
Q ss_pred ecCCCcEEEEEECCCeEEEEecCCC
Q 000685 378 HSLQPHLVATGTNVGVIISEFDPRS 402 (1352)
Q Consensus 378 sp~~~~lLatGs~DG~IlriWd~~~ 402 (1352)
|| .-+.|..|+.||.+...||...
T Consensus 466 hp-kLNQi~~gsgdG~~~vyYdp~~ 489 (641)
T KOG0772|consen 466 HP-KLNQIFAGSGDGTAHVYYDPNE 489 (641)
T ss_pred cc-hhhheeeecCCCceEEEECccc
Confidence 99 6888999999999866777553
No 61
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.4e-21 Score=207.54 Aligned_cols=238 Identities=16% Similarity=0.257 Sum_probs=192.7
Q ss_pred ccccCCCCeeeeeecCC-CCeEEEEEecCcEEEE-EeeCC---ccccccccccCCCCeEEEEEeeccccCCCCEEEEEEC
Q 000685 115 AVSNVTSGFASPPPSTK-GRHFLVICCVNKAIFL-DLVTM---RGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS 189 (1352)
Q Consensus 115 ~~~~~~~~V~slafspd-g~~lLasgs~D~~I~w-Dl~t~---~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~ 189 (1352)
..+| ...++.++|+|- |. +|++|+.|+.+++ +...+ .++.+ ...+|...|++++| +|.|++|+++|.
T Consensus 10 ~~gh-~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~ck~v-ld~~hkrsVRsvAw-----sp~g~~La~aSF 81 (312)
T KOG0645|consen 10 LSGH-KDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTCKTV-LDDGHKRSVRSVAW-----SPHGRYLASASF 81 (312)
T ss_pred ecCC-CCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEEEEe-ccccchheeeeeee-----cCCCcEEEEeec
Confidence 3444 678999999998 65 9999999999965 65532 22222 23578999999999 789999999999
Q ss_pred CCcEEEEECCC--CeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceE
Q 000685 190 DGVIRVLSMIS--WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVV 267 (1352)
Q Consensus 190 DGtIrIWDl~t--~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~ 267 (1352)
|.++.||.-.. .+++..++ ||.+.|.|++ ++++|++|++||.|+.|-||.+..+.. |.....|..|..-|.
T Consensus 82 D~t~~Iw~k~~~efecv~~lE-GHEnEVK~Va---ws~sG~~LATCSRDKSVWiWe~deddE---fec~aVL~~HtqDVK 154 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECVATLE-GHENEVKCVA---WSASGNYLATCSRDKSVWIWEIDEDDE---FECIAVLQEHTQDVK 154 (312)
T ss_pred cceEEEeecCCCceeEEeeee-ccccceeEEE---EcCCCCEEEEeeCCCeEEEEEecCCCc---EEEEeeecccccccc
Confidence 99999998764 47888887 9999999998 699999999999999999999985543 344566899999999
Q ss_pred EEEeeccCCCCCEEEEEECCCcEEEEECC---CCeEEEEecCCCcccccCCceeEEEeCCCCC-EEEEecCCe--EEecc
Q 000685 268 AVELSRVMGGSPQLITIGADKTLAIWDTV---SFKELRRIKPVPKLACHSVASWCHPRAPNLD-ILTCVKDSH--IWAIE 341 (1352)
Q Consensus 268 slafsp~~~dg~~LaSgs~DgtV~IWDl~---tg~~l~~~~~~~~l~~hs~~V~svafspdg~-lLS~s~Dg~--IWDi~ 341 (1352)
.+.||| ...+|+|+|.|.+|++|+-. ...++++ +.+|++.|++++|++.|. +++++.|++ ||...
T Consensus 155 ~V~WHP---t~dlL~S~SYDnTIk~~~~~~dddW~c~~t------l~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 155 HVIWHP---TEDLLFSCSYDNTIKVYRDEDDDDWECVQT------LDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred EEEEcC---CcceeEEeccCCeEEEEeecCCCCeeEEEE------ecCccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence 999999 67899999999999999866 3456666 689999999999999985 668999996 78754
Q ss_pred CCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecC
Q 000685 342 HPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDP 400 (1352)
Q Consensus 342 t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~ 400 (1352)
+. +....+..++.+.|. ...|++++.|+.| ++|..
T Consensus 226 ~~--------------------~~~~~sr~~Y~v~W~---~~~IaS~ggD~~i-~lf~~ 260 (312)
T KOG0645|consen 226 TD--------------------LSGMHSRALYDVPWD---NGVIASGGGDDAI-RLFKE 260 (312)
T ss_pred cC--------------------cchhcccceEeeeec---ccceEeccCCCEE-EEEEe
Confidence 32 112222379999998 2359999999997 67753
No 62
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.89 E-value=1.2e-21 Score=209.21 Aligned_cols=285 Identities=13% Similarity=0.103 Sum_probs=219.0
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec--cccceeEecccccCCCccccc
Q 000685 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAM 82 (1352)
Q Consensus 5 ~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~~l 82 (1352)
..++||..+++.+.|+.+|.+|++++.|.++.||=..+|+.+.++. +|.+.|+++. .+.+.+++|+
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~-GHtGavW~~Did~~s~~liTGS----------- 71 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYD-GHTGAVWCCDIDWDSKHLITGS----------- 71 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeec-CCCceEEEEEecCCcceeeecc-----------
Confidence 4579999999999999999999999999999999999999999998 7889999988 6778888887
Q ss_pred cCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecC-----cEE-EEEeeCCc---
Q 000685 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVN-----KAI-FLDLVTMR--- 153 (1352)
Q Consensus 83 ~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D-----~~I-~wDl~t~~--- 153 (1352)
.|.++++||+.+++++. .-.....|+.+.|+.+|. +++.+.++ +.+ ++|+....
T Consensus 72 ----------AD~t~kLWDv~tGk~la------~~k~~~~Vk~~~F~~~gn-~~l~~tD~~mg~~~~v~~fdi~~~~~~~ 134 (327)
T KOG0643|consen 72 ----------ADQTAKLWDVETGKQLA------TWKTNSPVKRVDFSFGGN-LILASTDKQMGYTCFVSVFDIRDDSSDI 134 (327)
T ss_pred ----------ccceeEEEEcCCCcEEE------EeecCCeeEEEeeccCCc-EEEEEehhhcCcceEEEEEEccCChhhh
Confidence 68999999999998863 222266899999999997 55554433 334 34665221
Q ss_pred -c-ccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEE
Q 000685 154 -G-RDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLV 231 (1352)
Q Consensus 154 -~-~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~La 231 (1352)
. ..+.....+.+.++.+-| +|-++.|++|..||.|.+||.++++.+..-...|+..|+.++ ++++..+|+
T Consensus 135 ~s~ep~~kI~t~~skit~a~W-----g~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q---~s~d~T~Fi 206 (327)
T KOG0643|consen 135 DSEEPYLKIPTPDSKITSALW-----GPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQ---FSRDRTYFI 206 (327)
T ss_pred cccCceEEecCCccceeeeee-----cccCCEEEEecCCCcEEEEEcccCceeeechhhhcccccccc---ccCCcceEE
Confidence 1 112233455688999999 778999999999999999999998655544448999999998 899999999
Q ss_pred EEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEE-CCCc-EEEEECCCCeEEEEe-----
Q 000685 232 SGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIG-ADKT-LAIWDTVSFKELRRI----- 304 (1352)
Q Consensus 232 SgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs-~Dgt-V~IWDl~tg~~l~~~----- 304 (1352)
++|.|.+-++||+.+-++++++ ....+|++.+++|. .+.++.|| .+-. |.-=+.+.|+--.+|
T Consensus 207 T~s~Dttakl~D~~tl~v~Kty-------~te~PvN~aaisP~---~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~ 276 (327)
T KOG0643|consen 207 TGSKDTTAKLVDVRTLEVLKTY-------TTERPVNTAAISPL---LDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIF 276 (327)
T ss_pred ecccCccceeeeccceeeEEEe-------eecccccceecccc---cceEEecCCceeeeeeeecccccchhhhHHHHHH
Confidence 9999999999999998877763 24678999999993 44555544 3321 211122222211111
Q ss_pred -cCCCcccccCCceeEEEeCCCCCE-EEEecCCe
Q 000685 305 -KPVPKLACHSVASWCHPRAPNLDI-LTCVKDSH 336 (1352)
Q Consensus 305 -~~~~~l~~hs~~V~svafspdg~l-LS~s~Dg~ 336 (1352)
+....+.+|-++|++++|||+|+. .+||+||.
T Consensus 277 eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~ 310 (327)
T KOG0643|consen 277 EEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGY 310 (327)
T ss_pred HHHhccccccccCcceeEECCCCcccccCCCCce
Confidence 123357899999999999999994 58999996
No 63
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.89 E-value=9e-22 Score=212.92 Aligned_cols=311 Identities=15% Similarity=0.202 Sum_probs=223.3
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccC
Q 000685 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1352)
Q Consensus 5 ~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~ 84 (1352)
..+..|...+.+.+|||||.+++||+.|-.|+|.|++..-... .. +.+..+..+
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks--~~-------------~em~~~~~q----------- 159 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKS--KP-------------KEMISGDTQ----------- 159 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhc--ch-------------hhhccCCcc-----------
Confidence 4567899999999999999999999999999999987311000 00 001111100
Q ss_pred CceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEE-EeeCCccccccccccC
Q 000685 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELD 163 (1352)
Q Consensus 85 g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~w-Dl~t~~~~~i~~~~~h 163 (1352)
..+..+.++..| ...|+++.|+|... +|++|+.|+.+.+ |+.....+.-......
T Consensus 160 ----------------------a~hPvIRTlYDH-~devn~l~FHPre~-ILiS~srD~tvKlFDfsK~saKrA~K~~qd 215 (430)
T KOG0640|consen 160 ----------------------ARHPVIRTLYDH-VDEVNDLDFHPRET-ILISGSRDNTVKLFDFSKTSAKRAFKVFQD 215 (430)
T ss_pred ----------------------cCCceEeehhhc-cCcccceeecchhh-eEEeccCCCeEEEEecccHHHHHHHHHhhc
Confidence 001112344444 77899999999886 9999999999965 8865443332222334
Q ss_pred CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEE--ecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEE
Q 000685 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRY--TGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1352)
Q Consensus 164 ~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l--~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrV 241 (1352)
...|+|+.|| |.|.+|+.|.+-.++++||+++.++...- ..+|.+.|+++. +++.+++.++||.||.|++
T Consensus 216 ~~~vrsiSfH-----PsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~---Ys~t~~lYvTaSkDG~Ikl 287 (430)
T KOG0640|consen 216 TEPVRSISFH-----PSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVR---YSSTGSLYVTASKDGAIKL 287 (430)
T ss_pred cceeeeEeec-----CCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEE---ecCCccEEEEeccCCcEEe
Confidence 6789999994 58999999999999999999998886544 247999999997 8999999999999999999
Q ss_pred EeCCCCCccceeccccccccccc-ceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEE
Q 000685 242 WSADHGQDSRELVPKLSLKAHDG-GVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCH 320 (1352)
Q Consensus 242 WDl~tg~~~~~~~~~~~l~gH~~-~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~sv 320 (1352)
||--+++|+.++ -..|.+ .|.+..|.. +++||++.|.|..|++|.+.+++++..+.... ..+...--+..
T Consensus 288 wDGVS~rCv~t~-----~~AH~gsevcSa~Ftk---n~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg-~tgrq~~rtqA 358 (430)
T KOG0640|consen 288 WDGVSNRCVRTI-----GNAHGGSEVCSAVFTK---NGKYILSSGKDSTVKLWEISTGRMLKEYTGAG-TTGRQKHRTQA 358 (430)
T ss_pred eccccHHHHHHH-----HhhcCCceeeeEEEcc---CCeEEeecCCcceeeeeeecCCceEEEEecCC-cccchhhhhhh
Confidence 999999988764 356765 588899988 89999999999999999999999998863321 11111112234
Q ss_pred EeCCCCCEEEE-ecC-Ce--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEE
Q 000685 321 PRAPNLDILTC-VKD-SH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIIS 396 (1352)
Q Consensus 321 afspdg~lLS~-s~D-g~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~Ilr 396 (1352)
.|+...+++-- .+- +. -||.++... +. ..-.+|.. .+.++.-+|..+. +.+|++|-.+ |
T Consensus 359 vFNhtEdyVl~pDEas~slcsWdaRtadr-------------~~-l~slgHn~-a~R~i~HSP~~p~-FmTcsdD~ra-R 421 (430)
T KOG0640|consen 359 VFNHTEDYVLFPDEASNSLCSWDARTADR-------------VA-LLSLGHNG-AVRWIVHSPVEPA-FMTCSDDFRA-R 421 (430)
T ss_pred hhcCccceEEccccccCceeeccccchhh-------------hh-hcccCCCC-CceEEEeCCCCCc-eeeeccccee-e
Confidence 45555554422 111 12 488876521 01 11124555 8999999996554 8899999987 8
Q ss_pred Eec
Q 000685 397 EFD 399 (1352)
Q Consensus 397 iWd 399 (1352)
.|-
T Consensus 422 FWy 424 (430)
T KOG0640|consen 422 FWY 424 (430)
T ss_pred eee
Confidence 995
No 64
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.7e-20 Score=195.23 Aligned_cols=310 Identities=17% Similarity=0.190 Sum_probs=229.3
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCCceE
Q 000685 9 PTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVK 88 (1352)
Q Consensus 9 gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~ 88 (1352)
..+..|.+++|||.|.+.+.|+...+.||.-+..-.. +...|.. .+
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~---~r~~hea------------------------------~~- 75 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALID---LRHAHEA------------------------------AK- 75 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccC---ccccccc------------------------------cc-
Confidence 3467899999999999999999999999987653111 1111100 00
Q ss_pred EEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEE---EeeCCccc-cccccccCC
Q 000685 89 QVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL---DLVTMRGR-DIPKQELDN 164 (1352)
Q Consensus 89 sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~w---Dl~t~~~~-~i~~~~~h~ 164 (1352)
..-.++ .....||.+.|+|.+|+|+|+ ++++|+.|+.|.+ +..+.+.. .-..+..|.
T Consensus 76 ----~pp~v~--------------~kr~khhkgsiyc~~ws~~ge-liatgsndk~ik~l~fn~dt~~~~g~dle~nmhd 136 (350)
T KOG0641|consen 76 ----QPPSVL--------------CKRNKHHKGSIYCTAWSPCGE-LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHD 136 (350)
T ss_pred ----CCCeEE--------------eeeccccCccEEEEEecCccC-eEEecCCCceEEEEecccccccccCcceeeeecC
Confidence 000111 123456788999999999998 9999999999954 33332211 112346789
Q ss_pred CCeEEEEEeeccccCCCCEEEEEE-CCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEe
Q 000685 165 KSLVCMEFLSRSAVGDVPLVAFGS-SDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243 (1352)
Q Consensus 165 ~~V~~vaf~P~s~Spdg~~LasGs-~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWD 243 (1352)
+.|+.++|+-.. +..+.+|++++ .|..|.+-|..+++....+. ||++.|.++ ++-++-+|++||.|.+||+||
T Consensus 137 gtirdl~fld~~-~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s-ghtghilal----yswn~~m~~sgsqdktirfwd 210 (350)
T KOG0641|consen 137 GTIRDLAFLDDP-ESGGAILASAGAGDCKIYITDCGRGQGFHALS-GHTGHILAL----YSWNGAMFASGSQDKTIRFWD 210 (350)
T ss_pred CceeeeEEecCC-CcCceEEEecCCCcceEEEeecCCCCcceeec-CCcccEEEE----EEecCcEEEccCCCceEEEEe
Confidence 999999997532 23456777765 67788888999999988887 999999988 455889999999999999999
Q ss_pred CCCCCccceecccccccc-cccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEe
Q 000685 244 ADHGQDSRELVPKLSLKA-HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPR 322 (1352)
Q Consensus 244 l~tg~~~~~~~~~~~l~g-H~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svaf 322 (1352)
++-..++..+...+.-.| ....|.+++..| .+++|++|-.|....+||++.++.+++ +..|+..|.|+.|
T Consensus 211 lrv~~~v~~l~~~~~~~glessavaav~vdp---sgrll~sg~~dssc~lydirg~r~iq~------f~phsadir~vrf 281 (350)
T KOG0641|consen 211 LRVNSCVNTLDNDFHDGGLESSAVAAVAVDP---SGRLLASGHADSSCMLYDIRGGRMIQR------FHPHSADIRCVRF 281 (350)
T ss_pred eeccceeeeccCcccCCCcccceeEEEEECC---CcceeeeccCCCceEEEEeeCCceeee------eCCCccceeEEEe
Confidence 998877765322111111 124589999999 799999999999999999999999998 4779999999999
Q ss_pred CCCCC-EEEEecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEec
Q 000685 323 APNLD-ILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1352)
Q Consensus 323 spdg~-lLS~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd 399 (1352)
+|... +|+|+.|.+ +-|+.. ++....++.+...|++ .+..+.||| ...-+.+.+.|.++ .+|.
T Consensus 282 sp~a~yllt~syd~~ikltdlqg-----------dla~el~~~vv~ehkd-k~i~~rwh~-~d~sfisssadkt~-tlwa 347 (350)
T KOG0641|consen 282 SPGAHYLLTCSYDMKIKLTDLQG-----------DLAHELPIMVVAEHKD-KAIQCRWHP-QDFSFISSSADKTA-TLWA 347 (350)
T ss_pred CCCceEEEEecccceEEEeeccc-----------chhhcCceEEEEeccC-ceEEEEecC-ccceeeeccCcceE-EEec
Confidence 99977 559999986 556553 2223345666777777 788899999 46668888999987 6896
Q ss_pred C
Q 000685 400 P 400 (1352)
Q Consensus 400 ~ 400 (1352)
+
T Consensus 348 ~ 348 (350)
T KOG0641|consen 348 L 348 (350)
T ss_pred c
Confidence 4
No 65
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.3e-21 Score=223.69 Aligned_cols=273 Identities=17% Similarity=0.231 Sum_probs=216.6
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec--cccceeEecccccCCCccccccCCceE
Q 000685 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAMRGGSVK 88 (1352)
Q Consensus 11 s~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~~l~~g~V~ 88 (1352)
.+.|.+++|+|..++=+.....-.+.||+..+...++++... .+.++.++ .||+.|+.|+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srF-k~~v~s~~fR~DG~LlaaGD----------------- 87 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRF-KDVVYSVDFRSDGRLLAAGD----------------- 87 (487)
T ss_pred cCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhh-ccceeEEEeecCCeEEEccC-----------------
Confidence 368999999998885444445678999999887777655422 24455554 8999999986
Q ss_pred EEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEE-EeeCCccccccccccCCCCe
Q 000685 89 QVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDNKSL 167 (1352)
Q Consensus 89 sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~w-Dl~t~~~~~i~~~~~h~~~V 167 (1352)
..|.|+++|+.+...+ .....| ..++..+.|+|++...+++|++|+++.| |+.+... .....+|.++|
T Consensus 88 ----~sG~V~vfD~k~r~iL----R~~~ah-~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v--~~~l~~htDYV 156 (487)
T KOG0310|consen 88 ----ESGHVKVFDMKSRVIL----RQLYAH-QAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV--QAELSGHTDYV 156 (487)
T ss_pred ----CcCcEEEeccccHHHH----HHHhhc-cCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE--EEEecCCccee
Confidence 5799999996653222 334444 8899999999999889999999999965 7776642 44578999999
Q ss_pred EEEEEeeccccCCCCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCC
Q 000685 168 VCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH 246 (1352)
Q Consensus 168 ~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~-~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~t 246 (1352)
+|.+|+| .++..+++|+.||+||+||.++. ..+..+ .|..+|..+. +-|.|.+|++++ ...|+|||+.+
T Consensus 157 R~g~~~~----~~~hivvtGsYDg~vrl~DtR~~~~~v~el--nhg~pVe~vl---~lpsgs~iasAg-Gn~vkVWDl~~ 226 (487)
T KOG0310|consen 157 RCGDISP----ANDHIVVTGSYDGKVRLWDTRSLTSRVVEL--NHGCPVESVL---ALPSGSLIASAG-GNSVKVWDLTT 226 (487)
T ss_pred Eeecccc----CCCeEEEecCCCceEEEEEeccCCceeEEe--cCCCceeeEE---EcCCCCEEEEcC-CCeEEEEEecC
Confidence 9999965 35678999999999999999976 566666 5999999997 678888999977 45899999996
Q ss_pred CCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCC
Q 000685 247 GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNL 326 (1352)
Q Consensus 247 g~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg 326 (1352)
|..+-. .+..|...|+|+.+.. ++..|++||-|+.|++||+.+.+.+..+ .-.++|.+++.+|++
T Consensus 227 G~qll~-----~~~~H~KtVTcL~l~s---~~~rLlS~sLD~~VKVfd~t~~Kvv~s~-------~~~~pvLsiavs~dd 291 (487)
T KOG0310|consen 227 GGQLLT-----SMFNHNKTVTCLRLAS---DSTRLLSGSLDRHVKVFDTTNYKVVHSW-------KYPGPVLSIAVSPDD 291 (487)
T ss_pred Cceehh-----hhhcccceEEEEEeec---CCceEeecccccceEEEEccceEEEEee-------ecccceeeEEecCCC
Confidence 653321 2445999999999998 7899999999999999999999988874 346788899999998
Q ss_pred CEE-EEecCCeE
Q 000685 327 DIL-TCVKDSHI 337 (1352)
Q Consensus 327 ~lL-S~s~Dg~I 337 (1352)
+.+ .|..||.+
T Consensus 292 ~t~viGmsnGlv 303 (487)
T KOG0310|consen 292 QTVVIGMSNGLV 303 (487)
T ss_pred ceEEEeccccee
Confidence 855 67777764
No 66
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=9.8e-22 Score=237.93 Aligned_cols=308 Identities=14% Similarity=0.157 Sum_probs=203.0
Q ss_pred eEEec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEe-ccccceeEecccc-c-CCCcc
Q 000685 4 LKAFR-PTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV-GAKLEKLAEGELE-H-KGKPT 79 (1352)
Q Consensus 4 l~~L~-gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~v-s~dg~~Lasgs~d-~-~g~~l 79 (1352)
.+.+. .|.+.|+++.||+||+|||+||.||.|+||.+...+. ..........++.- ...++........ . .++..
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~-~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESER-MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccch-hcccccccchhhhhhhhccccCcccccccccccccc
Confidence 45667 9999999999999999999999999999999875433 22221111111111 1111110000000 0 00000
Q ss_pred ccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEE-EEeeCCcccccc
Q 000685 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIP 158 (1352)
Q Consensus 80 ~~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~-wDl~t~~~~~i~ 158 (1352)
..-.+.. ... .+.+...............+| ...|..+.|+.++ +|++.+.|.+++ |++...+|.+
T Consensus 338 ~~~~~~~-------s~~-~~~p~~~f~f~ekP~~ef~GH-t~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~CL~-- 404 (712)
T KOG0283|consen 338 SSRKGSQ-------SPC-VLLPLKAFVFSEKPFCEFKGH-TADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKECLK-- 404 (712)
T ss_pred ccccccC-------Ccc-ccCCCccccccccchhhhhcc-chhheecccccCC--eeEeccccccEEeecCCCcceee--
Confidence 0000000 111 111111111111122344555 8899999999876 899999999995 5777665544
Q ss_pred ccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCc
Q 000685 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL 238 (1352)
Q Consensus 159 ~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGt 238 (1352)
...|.+.|+||+|+|. |.+|+++||-||.||||++...+.+.-.. -...|++++ +.|+|+..+.|+.+|.
T Consensus 405 -~F~HndfVTcVaFnPv----DDryFiSGSLD~KvRiWsI~d~~Vv~W~D--l~~lITAvc---y~PdGk~avIGt~~G~ 474 (712)
T KOG0283|consen 405 -VFSHNDFVTCVAFNPV----DDRYFISGSLDGKVRLWSISDKKVVDWND--LRDLITAVC---YSPDGKGAVIGTFNGY 474 (712)
T ss_pred -EEecCCeeEEEEeccc----CCCcEeecccccceEEeecCcCeeEeehh--hhhhheeEE---eccCCceEEEEEeccE
Confidence 3679999999999874 78999999999999999999877765543 448999998 8999999999999999
Q ss_pred EEEEeCCCCCccceecccc---cccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCC
Q 000685 239 LILWSADHGQDSRELVPKL---SLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSV 315 (1352)
Q Consensus 239 VrVWDl~tg~~~~~~~~~~---~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~ 315 (1352)
+++|+....+....+.... .-..|. .|+.+.|.|. +...+++.+.|.+|||||.++...+..|+......
T Consensus 475 C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~--~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~---- 547 (712)
T KOG0283|consen 475 CRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPG--DPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTS---- 547 (712)
T ss_pred EEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCC--CCCeEEEecCCCceEEEeccchhhhhhhcccccCC----
Confidence 9999998766443221000 001233 7999999993 55578888999999999998877777754322111
Q ss_pred ceeEEEeCCCCCEE-EEecCCe--EEeccC
Q 000685 316 ASWCHPRAPNLDIL-TCVKDSH--IWAIEH 342 (1352)
Q Consensus 316 ~V~svafspdg~lL-S~s~Dg~--IWDi~t 342 (1352)
.-....|+.||++| ++++|.. ||++..
T Consensus 548 SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 548 SQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred cceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 12367888999955 6777774 898864
No 67
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.88 E-value=2.2e-21 Score=228.85 Aligned_cols=278 Identities=15% Similarity=0.231 Sum_probs=211.0
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCcccccc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~ 83 (1352)
-+.+.||+..|+.+++.+. .+++++|.||++++|+-..++.+.+...
T Consensus 7 s~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~-------------------------------- 53 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAF-------------------------------- 53 (745)
T ss_pred EEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceec--------------------------------
Confidence 3688999999999998765 4899999999999999654443321110
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeee-eeecCCCCeEEEEEecCcEE-EEEeeCCccccccccc
Q 000685 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFAS-PPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQE 161 (1352)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~s-lafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~ 161 (1352)
.++ .+.|.+ ++|-+..+..+++|+.|..+ +|..... ..+.++.
T Consensus 54 --------------------------------~~~-~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~--~P~~~Lk 98 (745)
T KOG0301|consen 54 --------------------------------EGP-KGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA--EPLYTLK 98 (745)
T ss_pred --------------------------------ccC-cceeeccceeccccCcceEeecccceEEEEecCCC--Cchhhhh
Confidence 001 122222 55554333368889988888 4455544 3466789
Q ss_pred cCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEE
Q 000685 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1352)
Q Consensus 162 ~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrV 241 (1352)
+|...|+|+.. ..++. +++||.|.++++|-. +++...+. +|+..|+++. .-+++ .++|||.|.+|++
T Consensus 99 gH~snVC~ls~-----~~~~~-~iSgSWD~TakvW~~--~~l~~~l~-gH~asVWAv~---~l~e~-~~vTgsaDKtIkl 165 (745)
T KOG0301|consen 99 GHKSNVCSLSI-----GEDGT-LISGSWDSTAKVWRI--GELVYSLQ-GHTASVWAVA---SLPEN-TYVTGSADKTIKL 165 (745)
T ss_pred ccccceeeeec-----CCcCc-eEecccccceEEecc--hhhhcccC-Ccchheeeee---ecCCC-cEEeccCcceeee
Confidence 99999999987 34455 999999999999976 45555665 9999999997 23333 9999999999999
Q ss_pred EeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEE
Q 000685 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHP 321 (1352)
Q Consensus 242 WDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~sva 321 (1352)
|.- ++.+++ +.+|.+.|..+++-+ ...++|++.||.|++|++ +|.++.+ +.+|++-|+++.
T Consensus 166 Wk~--~~~l~t------f~gHtD~VRgL~vl~----~~~flScsNDg~Ir~w~~-~ge~l~~------~~ghtn~vYsis 226 (745)
T KOG0301|consen 166 WKG--GTLLKT------FSGHTDCVRGLAVLD----DSHFLSCSNDGSIRLWDL-DGEVLLE------MHGHTNFVYSIS 226 (745)
T ss_pred ccC--Cchhhh------hccchhheeeeEEec----CCCeEeecCCceEEEEec-cCceeee------eeccceEEEEEE
Confidence 986 444443 799999999999987 568999999999999998 6787777 689999999999
Q ss_pred -eCCCCCEEEEecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEe
Q 000685 322 -RAPNLDILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEF 398 (1352)
Q Consensus 322 -fspdg~lLS~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriW 398 (1352)
..+++.++++|+|++ ||+... +.+.+....- .||++.+-+ ++. |++|+.||.| |+|
T Consensus 227 ~~~~~~~Ivs~gEDrtlriW~~~e-----------------~~q~I~lPtt-siWsa~~L~-NgD-Ivvg~SDG~V-rVf 285 (745)
T KOG0301|consen 227 MALSDGLIVSTGEDRTLRIWKKDE-----------------CVQVITLPTT-SIWSAKVLL-NGD-IVVGGSDGRV-RVF 285 (745)
T ss_pred ecCCCCeEEEecCCceEEEeecCc-----------------eEEEEecCcc-ceEEEEEee-CCC-EEEeccCceE-EEE
Confidence 555666789999996 898762 2445544443 799999998 466 8999999997 899
Q ss_pred cCCC
Q 000685 399 DPRS 402 (1352)
Q Consensus 399 d~~~ 402 (1352)
..+.
T Consensus 286 T~~k 289 (745)
T KOG0301|consen 286 TVDK 289 (745)
T ss_pred Eecc
Confidence 7664
No 68
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.4e-21 Score=207.40 Aligned_cols=268 Identities=19% Similarity=0.265 Sum_probs=212.9
Q ss_pred cCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEE-EeeCCccccccccccCCCCeEEEE
Q 000685 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDNKSLVCME 171 (1352)
Q Consensus 93 ~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~w-Dl~t~~~~~i~~~~~h~~~V~~va 171 (1352)
..|.+.|-++...+.+. ..........+..++|+++....+++++.||.+++ |. +.....+..++.|...|.++.
T Consensus 36 G~G~L~ile~~~~~gi~---e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~-~~~s~Pi~~~kEH~~EV~Svd 111 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQ---ECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL-TMPSKPIHKFKEHKREVYSVD 111 (311)
T ss_pred cCceEEEEecCCCCCeE---EEEeeecccceeEeeecCCCcceEEEEecCceEEEecc-CCCCcchhHHHhhhhheEEec
Confidence 46777887776443332 11222235678999999998889999999999965 73 444456777889999999999
Q ss_pred EeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccc
Q 000685 172 FLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSR 251 (1352)
Q Consensus 172 f~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~ 251 (1352)
|.+ .++..++++|.|++|++|+....+.+.++. ||..-|....| .+..+++|+++|.|+++++||++.....
T Consensus 112 wn~----~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~-gh~~~Iy~a~~--sp~~~nlfas~Sgd~~l~lwdvr~~gk~- 183 (311)
T KOG0277|consen 112 WNT----VRRRIFLTSSWDGTIKLWDPNRPNSVQTFN-GHNSCIYQAAF--SPHIPNLFASASGDGTLRLWDVRSPGKF- 183 (311)
T ss_pred ccc----ccceeEEeeccCCceEeecCCCCcceEeec-CCccEEEEEec--CCCCCCeEEEccCCceEEEEEecCCCce-
Confidence 953 356778889999999999999999999997 99999999984 4567889999999999999999865321
Q ss_pred eecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCC-EE-
Q 000685 252 ELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-IL- 329 (1352)
Q Consensus 252 ~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~-lL- 329 (1352)
..+..|...+.++.|+.. +..+++||+.|+.|++||+++.+. ++..+.+|.-.|+.+.|||... +|
T Consensus 184 -----~~i~ah~~Eil~cdw~ky--~~~vl~Tg~vd~~vr~wDir~~r~-----pl~eL~gh~~AVRkvk~Sph~~~lLa 251 (311)
T KOG0277|consen 184 -----MSIEAHNSEILCCDWSKY--NHNVLATGGVDNLVRGWDIRNLRT-----PLFELNGHGLAVRKVKFSPHHASLLA 251 (311)
T ss_pred -----eEEEeccceeEeeccccc--CCcEEEecCCCceEEEEehhhccc-----cceeecCCceEEEEEecCcchhhHhh
Confidence 226889999999999985 788999999999999999987551 2344799999999999999865 44
Q ss_pred EEecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecC
Q 000685 330 TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDP 400 (1352)
Q Consensus 330 S~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~ 400 (1352)
+++.|-+ |||..... ..+.+...|.. -+..+.|++.++.++|+.+.|+.+ .+|++
T Consensus 252 SasYDmT~riw~~~~~d--------------s~~e~~~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l-~Vw~p 308 (311)
T KOG0277|consen 252 SASYDMTVRIWDPERQD--------------SAIETVDHHTE-FVCGLDWSLFDPGQVASTGWDELL-YVWNP 308 (311)
T ss_pred hccccceEEecccccch--------------hhhhhhhccce-EEeccccccccCceeeecccccce-eeecc
Confidence 7888874 99987542 12334445555 899999999999999999999997 79984
No 69
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.88 E-value=1.7e-21 Score=240.77 Aligned_cols=306 Identities=13% Similarity=0.147 Sum_probs=227.3
Q ss_pred EecCC-CCCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccc
Q 000685 6 AFRPT-NDKIVKIQLHPTHPWLVTAD--ASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAM 82 (1352)
Q Consensus 6 ~L~gH-s~~V~~lafSPdg~~LaTgs--~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l 82 (1352)
.+-+| ...|.+++.||+|..++||+ .||.++||+.+. .+.+..
T Consensus 7 ~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~--vl~~~~-------------------------------- 52 (942)
T KOG0973|consen 7 TWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDP--VLDEKE-------------------------------- 52 (942)
T ss_pred cccccCCeeEEEEEecCCceeEecCCccccccceeecccc--ccchhh--------------------------------
Confidence 34444 46799999999999999999 899999999663 111111
Q ss_pred cCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeC----Cc----
Q 000685 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVT----MR---- 153 (1352)
Q Consensus 83 ~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t----~~---- 153 (1352)
.||.. +.. .......|...|.|+.|++||+ +|++|++|+.+ +|.... ..
T Consensus 53 ----------------~~~~~----l~k-~l~~m~~h~~sv~CVR~S~dG~-~lAsGSDD~~v~iW~~~~~~~~~~fgs~ 110 (942)
T KOG0973|consen 53 ----------------EKNEN----LPK-HLCTMDDHDGSVNCVRFSPDGS-YLASGSDDRLVMIWERAEIGSGTVFGST 110 (942)
T ss_pred ----------------hhhcc----cch-hheeeccccCceeEEEECCCCC-eEeeccCcceEEEeeecccCCccccccc
Confidence 11111 000 1122333488899999999998 99999999998 665541 00
Q ss_pred --------cccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCC
Q 000685 154 --------GRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASS 225 (1352)
Q Consensus 154 --------~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~ 225 (1352)
.+.+..+..|...|..+.| +|++.++++++.|++|.|||.++.++++.+. +|.+.|..+. +.|
T Consensus 111 g~~~~vE~wk~~~~l~~H~~DV~Dv~W-----sp~~~~lvS~s~DnsViiwn~~tF~~~~vl~-~H~s~VKGvs---~DP 181 (942)
T KOG0973|consen 111 GGAKNVESWKVVSILRGHDSDVLDVNW-----SPDDSLLVSVSLDNSVIIWNAKTFELLKVLR-GHQSLVKGVS---WDP 181 (942)
T ss_pred ccccccceeeEEEEEecCCCccceecc-----CCCccEEEEecccceEEEEccccceeeeeee-cccccccceE---ECC
Confidence 1234566889999999999 7899999999999999999999999998887 9999999998 699
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEEC----CCcEEEEECCCCeEE
Q 000685 226 GEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA----DKTLAIWDTVSFKEL 301 (1352)
Q Consensus 226 dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~----DgtV~IWDl~tg~~l 301 (1352)
-|++|+|-+.|++|+||++.+....+.+...+.-..-..-...+.|+| ||.+|++.-. -.++.|.+-.+++.-
T Consensus 182 ~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP---DG~~las~nA~n~~~~~~~IieR~tWk~~ 258 (942)
T KOG0973|consen 182 IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP---DGHHLASPNAVNGGKSTIAIIERGTWKVD 258 (942)
T ss_pred ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCC---CcCeecchhhccCCcceeEEEecCCceee
Confidence 999999999999999999877655544332222222334478899999 8999998753 356788887776654
Q ss_pred EEecCCCcccccCCceeEEEeCCC------C---------C--EE-EEecCCe--EEeccCCcccccccCccccCCCCCC
Q 000685 302 RRIKPVPKLACHSVASWCHPRAPN------L---------D--IL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPP 361 (1352)
Q Consensus 302 ~~~~~~~~l~~hs~~V~svafspd------g---------~--lL-S~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~ 361 (1352)
.. +-||..++.++.|+|. . . ++ +||.|+. ||..... +|+
T Consensus 259 ~~------LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~---------------RPl 317 (942)
T KOG0973|consen 259 KD------LVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP---------------RPL 317 (942)
T ss_pred ee------eecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC---------------Cch
Confidence 44 6899999999999973 2 1 34 5789986 8987543 233
Q ss_pred eEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCC
Q 000685 362 QVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1352)
Q Consensus 362 ~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~~ 402 (1352)
.+...-....|..+.|+| +|..|+.+|.||.| .++...+
T Consensus 318 ~vi~~lf~~SI~DmsWsp-dG~~LfacS~DGtV-~~i~Fee 356 (942)
T KOG0973|consen 318 FVIHNLFNKSIVDMSWSP-DGFSLFACSLDGTV-ALIHFEE 356 (942)
T ss_pred hhhhhhhcCceeeeeEcC-CCCeEEEEecCCeE-EEEEcch
Confidence 333222234799999999 78889999999998 4666554
No 70
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.7e-21 Score=210.75 Aligned_cols=326 Identities=15% Similarity=0.207 Sum_probs=234.1
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec--cccceeEecccccCCCcccc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEA 81 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~~ 81 (1352)
++.|.||.++|+.++.....+.+.+++.|.+.+||.+++|.|+.++. +|.+.+.++. +.+..+++++
T Consensus 141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~-GH~GSVNsikfh~s~~L~lTaS---------- 209 (481)
T KOG0300|consen 141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYT-GHTGSVNSIKFHNSGLLLLTAS---------- 209 (481)
T ss_pred hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeec-ccccceeeEEeccccceEEEcc----------
Confidence 67899999999999999999999999999999999999999999998 6677777666 5566666665
Q ss_pred ccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeec-CCCCeEEE--EEecCcEEEEEeeCCcccccc
Q 000685 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPS-TKGRHFLV--ICCVNKAIFLDLVTMRGRDIP 158 (1352)
Q Consensus 82 l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafs-pdg~~lLa--sgs~D~~I~wDl~t~~~~~i~ 158 (1352)
.|++..||...-+-... .......|.+. --+.-+ .+.+ ..- .-+++..|+. .+.
T Consensus 210 -----------GD~taHIW~~av~~~vP--~~~a~~~hSsE-eE~e~sDe~~~-d~d~~~~sD~~tiRv--------Pl~ 266 (481)
T KOG0300|consen 210 -----------GDETAHIWKAAVNWEVP--SNNAPSDHSSE-EEEEHSDEHNR-DTDSSEKSDGHTIRV--------PLM 266 (481)
T ss_pred -----------CCcchHHHHHhhcCcCC--CCCCCCCCCch-hhhhccccccc-ccccccccCCceeee--------eee
Confidence 57778888644321110 00111111110 000000 0010 000 0112223322 233
Q ss_pred ccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCc
Q 000685 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL 238 (1352)
Q Consensus 159 ~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGt 238 (1352)
.+.+|...|.|..|+ ..|+.+++++.|.+-.+||++++..+..+. ||....+.++ .+|..+++++.|.|.+
T Consensus 267 ~ltgH~~vV~a~dWL-----~gg~Q~vTaSWDRTAnlwDVEtge~v~~Lt-GHd~ELtHcs---tHptQrLVvTsSrDtT 337 (481)
T KOG0300|consen 267 RLTGHRAVVSACDWL-----AGGQQMVTASWDRTANLWDVETGEVVNILT-GHDSELTHCS---THPTQRLVVTSSRDTT 337 (481)
T ss_pred eeeccccceEehhhh-----cCcceeeeeeccccceeeeeccCceecccc-Ccchhccccc---cCCcceEEEEeccCce
Confidence 457799999999995 468999999999999999999999999987 9999999887 7899999999999999
Q ss_pred EEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCe-EEEEecCCCcccccCCce
Q 000685 239 LILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK-ELRRIKPVPKLACHSVAS 317 (1352)
Q Consensus 239 VrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~-~l~~~~~~~~l~~hs~~V 317 (1352)
.|+||++.. +. ....|+||.+.|+++.|.. +..+++|++|++|+|||+++.+ .+.++ .-...+
T Consensus 338 FRLWDFRea--I~---sV~VFQGHtdtVTS~vF~~----dd~vVSgSDDrTvKvWdLrNMRsplATI-------RtdS~~ 401 (481)
T KOG0300|consen 338 FRLWDFREA--IQ---SVAVFQGHTDTVTSVVFNT----DDRVVSGSDDRTVKVWDLRNMRSPLATI-------RTDSPA 401 (481)
T ss_pred eEeccchhh--cc---eeeeecccccceeEEEEec----CCceeecCCCceEEEeeeccccCcceee-------ecCCcc
Confidence 999999843 22 2345899999999999987 5789999999999999998754 34442 224566
Q ss_pred eEEEeCCCCCEEEEecCCe---EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCC-cEEEEEECCCe
Q 000685 318 WCHPRAPNLDILTCVKDSH---IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQP-HLVATGTNVGV 393 (1352)
Q Consensus 318 ~svafspdg~lLS~s~Dg~---IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~-~lLatGs~DG~ 393 (1352)
+.++.+..+.+|+--.|++ |||++...... .|...-.+|.. .|.|.+|...-+ .-|++++.|..
T Consensus 402 NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaR-----------lPrtsRqgHrR-MV~c~AW~eehp~cnLftcGFDR~ 469 (481)
T KOG0300|consen 402 NRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR-----------LPRTSRQGHRR-MVTCCAWLEEHPACNLFTCGFDRM 469 (481)
T ss_pred ceeEeecCCceEEeccCCceEEEEecCCCcccc-----------CCcccccccce-eeeeeeccccCcccccccccccce
Confidence 7888888888998888874 89998543211 11223345666 899999986322 33778888888
Q ss_pred EEEEecCC
Q 000685 394 IISEFDPR 401 (1352)
Q Consensus 394 IlriWd~~ 401 (1352)
+ .-|++.
T Consensus 470 v-~gW~in 476 (481)
T KOG0300|consen 470 V-AGWKIN 476 (481)
T ss_pred e-eeeEec
Confidence 7 588765
No 71
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.87 E-value=8e-20 Score=219.14 Aligned_cols=333 Identities=14% Similarity=0.172 Sum_probs=248.5
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec--cccceeE-ecccccCCCccc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLA-EGELEHKGKPTE 80 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs--~dg~~La-sgs~d~~g~~l~ 80 (1352)
+.+|+++.++|+++.=+|--..++.|..+|+|.|+|+..++.+.+|+. .-+.|..++ .||..+. ++.
T Consensus 195 v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~-d~g~VtslSFrtDG~p~las~~--------- 264 (910)
T KOG1539|consen 195 VYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQ-DWGRVTSLSFRTDGNPLLASGR--------- 264 (910)
T ss_pred EEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEc-cccceeEEEeccCCCeeEEecc---------
Confidence 789999999999999999999999999999999999999999999983 234555555 5666443 332
Q ss_pred cccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EE--EeeCCccccc
Q 000685 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FL--DLVTMRGRDI 157 (1352)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~w--Dl~t~~~~~i 157 (1352)
..|.+.+||+...+.+ ......|.+.+....|.+..+ ++++.+.|+.+ .| |...+..+.+
T Consensus 265 ------------~~G~m~~wDLe~kkl~----~v~~nah~~sv~~~~fl~~ep-Vl~ta~~DnSlk~~vfD~~dg~pR~L 327 (910)
T KOG1539|consen 265 ------------SNGDMAFWDLEKKKLI----NVTRNAHYGSVTGATFLPGEP-VLVTAGADNSLKVWVFDSGDGVPRLL 327 (910)
T ss_pred ------------CCceEEEEEcCCCeee----eeeeccccCCcccceecCCCc-eEeeccCCCceeEEEeeCCCCcchhe
Confidence 4688999999998776 333434477788889999776 88888877766 44 6555555666
Q ss_pred cccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEEC---------------------------------------
Q 000685 158 PKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSM--------------------------------------- 198 (1352)
Q Consensus 158 ~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl--------------------------------------- 198 (1352)
....+|..+..|+.|+ ...|..+.+++.|++.+.+++
T Consensus 328 R~R~GHs~Pp~~irfy----~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~ 403 (910)
T KOG1539|consen 328 RSRGGHSAPPSCIRFY----GSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAF 403 (910)
T ss_pred eeccCCCCCchheeee----ccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeec
Confidence 6778999999999996 345677777777776655544
Q ss_pred --------------------------CCCeEEEEEecCCC------CCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCC
Q 000685 199 --------------------------ISWKLVRRYTGGHK------GSISCLMTFMASSGEALLVSGGSDGLLILWSADH 246 (1352)
Q Consensus 199 --------------------------~t~~~i~~l~~gH~------~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~t 246 (1352)
++...=+... .+. ..+.+++ .++.|++.+.|+..|+|-+|++.+
T Consensus 404 ~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L-~~~~~~~~~~~~~av~---vs~CGNF~~IG~S~G~Id~fNmQS 479 (910)
T KOG1539|consen 404 ENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVL-DPKRFKKDDINATAVC---VSFCGNFVFIGYSKGTIDRFNMQS 479 (910)
T ss_pred ccchhhhhcceeEEecCcceEEEEeccCcccccEEe-cCccccccCcceEEEE---EeccCceEEEeccCCeEEEEEccc
Confidence 2211100001 122 4455555 788999999999999999999999
Q ss_pred CCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCC
Q 000685 247 GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNL 326 (1352)
Q Consensus 247 g~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg 326 (1352)
|-....+. .-..|++.|+.++... -++.+++++.||.+++||......+..++ -...+.++..+...
T Consensus 480 Gi~r~sf~---~~~ah~~~V~gla~D~---~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-------l~~~~~~iv~hr~s 546 (910)
T KOG1539|consen 480 GIHRKSFG---DSPAHKGEVTGLAVDG---TNRLLVSAGADGILKFWDFKKKVLKKSLR-------LGSSITGIVYHRVS 546 (910)
T ss_pred Ceeecccc---cCccccCceeEEEecC---CCceEEEccCcceEEEEecCCcceeeeec-------cCCCcceeeeeehh
Confidence 86544421 1268999999999976 57889999999999999999887666542 22344567777776
Q ss_pred CEEEEecCC---eEEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCC
Q 000685 327 DILTCVKDS---HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1352)
Q Consensus 327 ~lLS~s~Dg---~IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~~ 402 (1352)
.+++...|. .++|+.+.+ -+..|.+|++ +|+.++||| ++..|++++.|+.| |+||+-+
T Consensus 547 ~l~a~~~ddf~I~vvD~~t~k---------------vvR~f~gh~n-ritd~~FS~-DgrWlisasmD~tI-r~wDlpt 607 (910)
T KOG1539|consen 547 DLLAIALDDFSIRVVDVVTRK---------------VVREFWGHGN-RITDMTFSP-DGRWLISASMDSTI-RTWDLPT 607 (910)
T ss_pred hhhhhhcCceeEEEEEchhhh---------------hhHHhhcccc-ceeeeEeCC-CCcEEEEeecCCcE-EEEeccC
Confidence 666443333 378887653 2456778888 999999999 68889999999997 9999654
No 72
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.87 E-value=5.4e-22 Score=214.93 Aligned_cols=243 Identities=18% Similarity=0.284 Sum_probs=199.1
Q ss_pred CCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCcccccc------ccccCCCCeEEEEEeeccccCCCCEEEEEECCCc
Q 000685 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIP------KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGV 192 (1352)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~------~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGt 192 (1352)
.+.+-|..|+|||+ +|++|+.||.+ +||+.+++.+.-. .+..+.+.|.|+.| |.|...+++|+.||.
T Consensus 213 KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~F-----SRDsEMlAsGsqDGk 286 (508)
T KOG0275|consen 213 KSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISF-----SRDSEMLASGSQDGK 286 (508)
T ss_pred ccchhheeeCCCCc-eEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEee-----cccHHHhhccCcCCc
Confidence 55678889999998 99999999999 8899998765322 23446789999999 889999999999999
Q ss_pred EEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEee
Q 000685 193 IRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELS 272 (1352)
Q Consensus 193 IrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafs 272 (1352)
|++|.+++|.|++.|..+|+..|+|+. |+.|+..+++++.|.+||+.-+.+|+++++ ++||..-|+...|.
T Consensus 287 IKvWri~tG~ClRrFdrAHtkGvt~l~---FSrD~SqiLS~sfD~tvRiHGlKSGK~LKE------frGHsSyvn~a~ft 357 (508)
T KOG0275|consen 287 IKVWRIETGQCLRRFDRAHTKGVTCLS---FSRDNSQILSASFDQTVRIHGLKSGKCLKE------FRGHSSYVNEATFT 357 (508)
T ss_pred EEEEEEecchHHHHhhhhhccCeeEEE---EccCcchhhcccccceEEEeccccchhHHH------hcCccccccceEEc
Confidence 999999999999999889999999998 899999999999999999999999999887 79999999999999
Q ss_pred ccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCC--EEEEecCCeEEeccCCccccccc
Q 000685 273 RVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD--ILTCVKDSHIWAIEHPTYSALTR 350 (1352)
Q Consensus 273 p~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~--lLS~s~Dg~IWDi~t~~~~~~~~ 350 (1352)
+ +|.+++++|.||+|++|+..+++|+.+|++. +....|.++..-|.+. ++.|...++++-++-..
T Consensus 358 ~---dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~----~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG------ 424 (508)
T KOG0275|consen 358 D---DGHHIISASSDGTVKVWHGKTTECLSTFKPL----GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG------ 424 (508)
T ss_pred C---CCCeEEEecCCccEEEecCcchhhhhhccCC----CCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc------
Confidence 8 8999999999999999999999999998764 3455677777777654 77887777765544210
Q ss_pred CccccCCCCCCeEEe---cCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCC
Q 000685 351 PLCELSSLVPPQVLA---HHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1352)
Q Consensus 351 ~l~~~~~~~~~~~l~---~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~ 401 (1352)
.-+.++. ..+. .+.+...+| .+..+.+-+.|+++ ..|...
T Consensus 425 --------QvVrsfsSGkREgG-dFi~~~lSp-kGewiYcigED~vl-YCF~~~ 467 (508)
T KOG0275|consen 425 --------QVVRSFSSGKREGG-DFINAILSP-KGEWIYCIGEDGVL-YCFSVL 467 (508)
T ss_pred --------eEEeeeccCCccCC-ceEEEEecC-CCcEEEEEccCcEE-EEEEee
Confidence 0011221 1222 566777899 67789999999986 355433
No 73
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=1.1e-20 Score=201.45 Aligned_cols=270 Identities=18% Similarity=0.240 Sum_probs=209.3
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEec-cCccceEEec---cccceeEecccccCCCccc
Q 000685 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKA-GGVDQRRLVG---AKLEKLAEGELEHKGKPTE 80 (1352)
Q Consensus 5 ~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~-~~~~~i~~vs---~dg~~Lasgs~d~~g~~l~ 80 (1352)
+.+++|...|.+++|+-+|..|++|+.|+++.||+++-++....... +|.+.+-.++ +....+++.+
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas--------- 84 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATAS--------- 84 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEec---------
Confidence 67889999999999999999999999999999999987755544432 3443433333 3334444443
Q ss_pred cccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEec-CcEEEEEeeCCccccccc
Q 000685 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCV-NKAIFLDLVTMRGRDIPK 159 (1352)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~-D~~I~wDl~t~~~~~i~~ 159 (1352)
.|..||+||++.+++.... .. ...-.-+.|+|+|. .++.+.. |.+..+|..+.+.. .
T Consensus 85 ------------~dk~ir~wd~r~~k~~~~i-----~~-~~eni~i~wsp~g~-~~~~~~kdD~it~id~r~~~~~---~ 142 (313)
T KOG1407|consen 85 ------------GDKTIRIWDIRSGKCTARI-----ET-KGENINITWSPDGE-YIAVGNKDDRITFIDARTYKIV---N 142 (313)
T ss_pred ------------CCceEEEEEeccCcEEEEe-----ec-cCcceEEEEcCCCC-EEEEecCcccEEEEEeccccee---e
Confidence 6899999999999987411 11 11223477999998 5555554 44556688775432 2
Q ss_pred cccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcE
Q 000685 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1352)
Q Consensus 160 ~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtV 239 (1352)
.......+..+.| +-++.+++.-+..|+|.|.....-+.+..+. +|.....||. |+|+|++|++|+.|-.+
T Consensus 143 ~~~~~~e~ne~~w-----~~~nd~Fflt~GlG~v~ILsypsLkpv~si~-AH~snCicI~---f~p~GryfA~GsADAlv 213 (313)
T KOG1407|consen 143 EEQFKFEVNEISW-----NNSNDLFFLTNGLGCVEILSYPSLKPVQSIK-AHPSNCICIE---FDPDGRYFATGSADALV 213 (313)
T ss_pred hhcccceeeeeee-----cCCCCEEEEecCCceEEEEeccccccccccc-cCCcceEEEE---ECCCCceEeecccccee
Confidence 2334557778888 4456677777778999999999999999997 9998888886 89999999999999999
Q ss_pred EEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeE
Q 000685 240 ILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWC 319 (1352)
Q Consensus 240 rVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~s 319 (1352)
.+||+..--|++. +..|+-+|..+.|+. ++++|++||.|..|-|=++.+|..+..+ .+.++...
T Consensus 214 SLWD~~ELiC~R~------isRldwpVRTlSFS~---dg~~lASaSEDh~IDIA~vetGd~~~eI-------~~~~~t~t 277 (313)
T KOG1407|consen 214 SLWDVDELICERC------ISRLDWPVRTLSFSH---DGRMLASASEDHFIDIAEVETGDRVWEI-------PCEGPTFT 277 (313)
T ss_pred eccChhHhhhhee------eccccCceEEEEecc---CcceeeccCccceEEeEecccCCeEEEe-------eccCCcee
Confidence 9999987666554 677899999999999 8999999999999999999999988874 35666779
Q ss_pred EEeCCCCCEEE
Q 000685 320 HPRAPNLDILT 330 (1352)
Q Consensus 320 vafspdg~lLS 330 (1352)
++|+|...+|+
T Consensus 278 VAWHPk~~LLA 288 (313)
T KOG1407|consen 278 VAWHPKRPLLA 288 (313)
T ss_pred EEecCCCceee
Confidence 99999998885
No 74
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.4e-20 Score=197.75 Aligned_cols=244 Identities=15% Similarity=0.196 Sum_probs=198.5
Q ss_pred CCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEE
Q 000685 119 VTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLS 197 (1352)
Q Consensus 119 ~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWD 197 (1352)
+...|+.+.|+-+|+ +.++|+.|.++ .||...+.+ +.+..+|...|..++. +.|...+++|+.|..|.+||
T Consensus 16 ~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~l--iktYsghG~EVlD~~~-----s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGAL--IKTYSGHGHEVLDAAL-----SSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred cccceEEEEEccCCC-EEEEcCCCceEEeecccccce--eeeecCCCceeeeccc-----cccccccccCCCCceEEEEE
Confidence 377899999999998 88888889988 568877654 6778999999999988 67889999999999999999
Q ss_pred CCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCC
Q 000685 198 MISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGG 277 (1352)
Q Consensus 198 l~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~d 277 (1352)
+.+|+.++++. +|.+.|+.++ |+.+...++|||.|.+|++||-++.. +.|...+....++|.++...
T Consensus 88 V~TGkv~Rr~r-gH~aqVNtV~---fNeesSVv~SgsfD~s~r~wDCRS~s----~ePiQildea~D~V~Si~v~----- 154 (307)
T KOG0316|consen 88 VNTGKVDRRFR-GHLAQVNTVR---FNEESSVVASGSFDSSVRLWDCRSRS----FEPIQILDEAKDGVSSIDVA----- 154 (307)
T ss_pred cccCeeeeecc-cccceeeEEE---ecCcceEEEeccccceeEEEEcccCC----CCccchhhhhcCceeEEEec-----
Confidence 99999999998 9999999998 78899999999999999999998765 35666778888999999986
Q ss_pred CCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCC-EEEEecCCe--EEeccCCcccccccCccc
Q 000685 278 SPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-ILTCVKDSH--IWAIEHPTYSALTRPLCE 354 (1352)
Q Consensus 278 g~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~-lLS~s~Dg~--IWDi~t~~~~~~~~~l~~ 354 (1352)
+..|++||.||++|.||++.|+.... ....+|+|+.|++++. .|+++.|++ +-|-.+++
T Consensus 155 ~heIvaGS~DGtvRtydiR~G~l~sD--------y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGk---------- 216 (307)
T KOG0316|consen 155 EHEIVAGSVDGTVRTYDIRKGTLSSD--------YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGK---------- 216 (307)
T ss_pred ccEEEeeccCCcEEEEEeecceeehh--------hcCCcceeEEecCCCCEEEEeeccceeeecccchhH----------
Confidence 47999999999999999999986443 3345788999999988 568889986 45555542
Q ss_pred cCCCCCCeEEecCCcccEEEE--EEecCCCcEEEEEECCCeEEEEecCCCCCCcccc
Q 000685 355 LSSLVPPQVLAHHKKLRVYCM--VAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPL 409 (1352)
Q Consensus 355 ~~~~~~~~~l~~h~~~~V~~l--a~sp~~~~lLatGs~DG~IlriWd~~~~p~i~~l 409 (1352)
.+..+.+|.+ .=+-+ ++.. ....+++|+.||.| .+||+.....+..+
T Consensus 217 -----lL~sYkGhkn-~eykldc~l~q-sdthV~sgSEDG~V-y~wdLvd~~~~sk~ 265 (307)
T KOG0316|consen 217 -----LLKSYKGHKN-MEYKLDCCLNQ-SDTHVFSGSEDGKV-YFWDLVDETQISKL 265 (307)
T ss_pred -----HHHHhccccc-ceeeeeeeecc-cceeEEeccCCceE-EEEEeccceeeeee
Confidence 2455666665 22222 3333 45679999999998 69998865554443
No 75
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=1.2e-21 Score=216.39 Aligned_cols=282 Identities=13% Similarity=0.205 Sum_probs=210.4
Q ss_pred eEEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccc
Q 000685 4 LKAFRPTNDKIVKIQLHPTH-PWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAM 82 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg-~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l 82 (1352)
+-.|.||.++|.|++=||.. ..++||+.||.|+|||+.+..++.+|+.|.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~----------------------------- 109 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHE----------------------------- 109 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeeccc-----------------------------
Confidence 34679999999999999987 689999999999999999999988888542
Q ss_pred cCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccccc
Q 000685 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQE 161 (1352)
Q Consensus 83 ~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~ 161 (1352)
|. |.+++++. . .++++++|..+ +|-+.-. .+. ..
T Consensus 110 --G~------------------------------------V~Gi~v~~--~-~~~tvgdDKtvK~wk~~~~---p~~-ti 144 (433)
T KOG0268|consen 110 --GL------------------------------------VRGICVTQ--T-SFFTVGDDKTVKQWKIDGP---PLH-TI 144 (433)
T ss_pred --Cc------------------------------------eeeEEecc--c-ceEEecCCcceeeeeccCC---cce-ee
Confidence 33 34444443 2 56777778777 5633321 111 11
Q ss_pred cCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCC-CCCEEEEEeCCCcEE
Q 000685 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASS-GEALLVSGGSDGLLI 240 (1352)
Q Consensus 162 ~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~-dg~~LaSgS~DGtVr 240 (1352)
.....+..+.- +..+..++||+.+ |.|||.+...++..+. -....|.++. ++| ...+|++|+.|+.|.
T Consensus 145 lg~s~~~gIdh-----~~~~~~FaTcGe~--i~IWD~~R~~Pv~sms-wG~Dti~svk---fNpvETsILas~~sDrsIv 213 (433)
T KOG0268|consen 145 LGKSVYLGIDH-----HRKNSVFATCGEQ--IDIWDEQRDNPVSSMS-WGADSISSVK---FNPVETSILASCASDRSIV 213 (433)
T ss_pred ecccccccccc-----ccccccccccCce--eeecccccCCccceee-cCCCceeEEe---cCCCcchheeeeccCCceE
Confidence 22344555555 3456778888765 9999999888888886 5567788887 454 556788888999999
Q ss_pred EEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEE
Q 000685 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCH 320 (1352)
Q Consensus 241 VWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~sv 320 (1352)
+||++++..++... -.-.-+.|+|+| +...+++|+.|..++.||++.... +.....+|.+.|.++
T Consensus 214 LyD~R~~~Pl~KVi-------~~mRTN~IswnP---eafnF~~a~ED~nlY~~DmR~l~~-----p~~v~~dhvsAV~dV 278 (433)
T KOG0268|consen 214 LYDLRQASPLKKVI-------LTMRTNTICWNP---EAFNFVAANEDHNLYTYDMRNLSR-----PLNVHKDHVSAVMDV 278 (433)
T ss_pred EEecccCCccceee-------eeccccceecCc---cccceeeccccccceehhhhhhcc-----cchhhcccceeEEEe
Confidence 99999998776521 122357899999 788999999999999999986431 223368999999999
Q ss_pred EeCCCCC-EEEEecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEE
Q 000685 321 PRAPNLD-ILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISE 397 (1352)
Q Consensus 321 afspdg~-lLS~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~Ilri 397 (1352)
.|||.|+ +++||.|.+ ||.++.+.. -..+.......|.|+.|+. +..++++||+|+.| |+
T Consensus 279 dfsptG~EfvsgsyDksIRIf~~~~~~S---------------RdiYhtkRMq~V~~Vk~S~-Dskyi~SGSdd~nv-Rl 341 (433)
T KOG0268|consen 279 DFSPTGQEFVSGSYDKSIRIFPVNHGHS---------------RDIYHTKRMQHVFCVKYSM-DSKYIISGSDDGNV-RL 341 (433)
T ss_pred ccCCCcchhccccccceEEEeecCCCcc---------------hhhhhHhhhheeeEEEEec-cccEEEecCCCcce-ee
Confidence 9999998 779999986 788876522 1122222234799999999 68889999999997 99
Q ss_pred ecCCC
Q 000685 398 FDPRS 402 (1352)
Q Consensus 398 Wd~~~ 402 (1352)
|..+.
T Consensus 342 Wka~A 346 (433)
T KOG0268|consen 342 WKAKA 346 (433)
T ss_pred eecch
Confidence 97553
No 76
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3.2e-20 Score=220.44 Aligned_cols=238 Identities=18% Similarity=0.236 Sum_probs=197.3
Q ss_pred CCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCcccccccccc-CCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEE
Q 000685 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL-DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLS 197 (1352)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~-h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWD 197 (1352)
...|+++.|+++|. .|++|..++.+ +||..+.+. +..... |...|.|++| ++..+.+|+.|+.|..+|
T Consensus 217 ~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~--~~~~~~~h~~rvg~laW-------~~~~lssGsr~~~I~~~d 286 (484)
T KOG0305|consen 217 EELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKK--TRTLRGSHASRVGSLAW-------NSSVLSSGSRDGKILNHD 286 (484)
T ss_pred CCceEEEEECCCCC-EEEEeecCCeEEEEehhhccc--cccccCCcCceeEEEec-------cCceEEEecCCCcEEEEE
Confidence 45689999999998 99999999999 778877543 455666 8999999999 578899999999999999
Q ss_pred CCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCC
Q 000685 198 MISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGG 277 (1352)
Q Consensus 198 l~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~d 277 (1352)
++..+.......+|...|..+. +++++.+|++|+.|+.+.|||..... +.+.+..|...|..++|+|. .
T Consensus 287 vR~~~~~~~~~~~H~qeVCgLk---ws~d~~~lASGgnDN~~~Iwd~~~~~------p~~~~~~H~aAVKA~awcP~--q 355 (484)
T KOG0305|consen 287 VRISQHVVSTLQGHRQEVCGLK---WSPDGNQLASGGNDNVVFIWDGLSPE------PKFTFTEHTAAVKALAWCPW--Q 355 (484)
T ss_pred EecchhhhhhhhcccceeeeeE---ECCCCCeeccCCCccceEeccCCCcc------ccEEEeccceeeeEeeeCCC--c
Confidence 9987655443348999999998 58999999999999999999995544 44557899999999999995 6
Q ss_pred CCEEEEEE--CCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCC-EEEE-e-cCC--eEEeccCCccccccc
Q 000685 278 SPQLITIG--ADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-ILTC-V-KDS--HIWAIEHPTYSALTR 350 (1352)
Q Consensus 278 g~~LaSgs--~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~-lLS~-s-~Dg--~IWDi~t~~~~~~~~ 350 (1352)
..+|++|+ .|++|++||..+|+.++.+ .-...|.++.|++..+ ++++ | .+. +||++.+.
T Consensus 356 ~~lLAsGGGs~D~~i~fwn~~~g~~i~~v-------dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~------- 421 (484)
T KOG0305|consen 356 SGLLATGGGSADRCIKFWNTNTGARIDSV-------DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM------- 421 (484)
T ss_pred cCceEEcCCCcccEEEEEEcCCCcEeccc-------ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-------
Confidence 77999887 5999999999999988873 3456788999999975 6643 2 333 48998753
Q ss_pred CccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCCC
Q 000685 351 PLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSL 403 (1352)
Q Consensus 351 ~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~~~ 403 (1352)
..+..+.+|.. +|..++++| ++..|++|+.|.++ ++|++-..
T Consensus 422 --------~~~~~l~gH~~-RVl~la~SP-dg~~i~t~a~DETl-rfw~~f~~ 463 (484)
T KOG0305|consen 422 --------KLVAELLGHTS-RVLYLALSP-DGETIVTGAADETL-RFWNLFDE 463 (484)
T ss_pred --------ceeeeecCCcc-eeEEEEECC-CCCEEEEecccCcE-EeccccCC
Confidence 34667888988 899999999 68889999999996 99987653
No 77
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=4.1e-20 Score=201.04 Aligned_cols=296 Identities=16% Similarity=0.179 Sum_probs=197.8
Q ss_pred eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccc
Q 000685 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAM 82 (1352)
Q Consensus 3 ~l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l 82 (1352)
.+..|+||.+.|++++|+.||++|+|++.|++|+||++..-. .+.|
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~----~~eH------------------------------ 123 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFE----NKEH------------------------------ 123 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhh----hhhh------------------------------
Confidence 356789999999999999999999999999999999987511 1101
Q ss_pred cCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEE-EEee---CCccc--c
Q 000685 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLV---TMRGR--D 156 (1352)
Q Consensus 83 ~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~-wDl~---t~~~~--~ 156 (1352)
+++.. ....+| -+.+.|.||-+.+++.+-.+..++ +-+. .|... .
T Consensus 124 -----------------------r~~R~--nve~dh----pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~ 174 (420)
T KOG2096|consen 124 -----------------------RCIRQ--NVEYDH----PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHF 174 (420)
T ss_pred -----------------------hHhhc--cccCCC----ceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCccc
Confidence 01100 011112 456788999887777766555553 3221 11111 0
Q ss_pred cc-----ccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEE
Q 000685 157 IP-----KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLV 231 (1352)
Q Consensus 157 i~-----~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~La 231 (1352)
+. ..+.|.-.|-.+-. ..++.+|++++.|..|.+|+++ |+.+..+. .....-+..+ .+|+|++++
T Consensus 175 v~~D~~~f~~kh~v~~i~iGi-----A~~~k~imsas~dt~i~lw~lk-Gq~L~~id-tnq~~n~~aa---vSP~GRFia 244 (420)
T KOG2096|consen 175 VHIDNLEFERKHQVDIINIGI-----AGNAKYIMSASLDTKICLWDLK-GQLLQSID-TNQSSNYDAA---VSPDGRFIA 244 (420)
T ss_pred ccccccccchhcccceEEEee-----cCCceEEEEecCCCcEEEEecC-Cceeeeec-ccccccccee---eCCCCcEEE
Confidence 10 11223444555554 4578899999999999999999 88888775 3333444443 799999999
Q ss_pred EEeCCCcEEEEeCCCCC--ccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCC----C---eEEE
Q 000685 232 SGGSDGLLILWSADHGQ--DSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVS----F---KELR 302 (1352)
Q Consensus 232 SgS~DGtVrVWDl~tg~--~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~t----g---~~l~ 302 (1352)
+++.---|++|.+--++ ..++....+.|+||...|.+++|++ +...++|.|.||+++|||.+- + +.++
T Consensus 245 ~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn---~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk 321 (420)
T KOG2096|consen 245 VSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN---SSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILK 321 (420)
T ss_pred EecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC---CcceeEEEecCCcEEEeeccceEecCCCchHhh
Confidence 99999999999974221 1233345678999999999999999 789999999999999999862 1 1222
Q ss_pred EecCCCcccccCCceeEEEeCCCCCEEEEecCC--eEEeccCCcccccccCccccCCCCCCeEE-ecCCcccEEEEEEec
Q 000685 303 RIKPVPKLACHSVASWCHPRAPNLDILTCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVL-AHHKKLRVYCMVAHS 379 (1352)
Q Consensus 303 ~~~~~~~l~~hs~~V~svafspdg~lLS~s~Dg--~IWDi~t~~~~~~~~~l~~~~~~~~~~~l-~~h~~~~V~~la~sp 379 (1352)
.+. ..+..-...-..+..+|+|++|+.+... +++..+++.. ...+ ..|+. .|.|+.|++
T Consensus 322 ~g~--~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~---------------~~~~e~~h~~-~Is~is~~~ 383 (420)
T KOG2096|consen 322 EGS--APLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKD---------------YPELEDIHST-TISSISYSS 383 (420)
T ss_pred cCC--cchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCcc---------------chhHHHhhcC-ceeeEEecC
Confidence 211 1122222333389999999988665444 4666665421 1122 23444 899999999
Q ss_pred CCCcEEEEEECCCe
Q 000685 380 LQPHLVATGTNVGV 393 (1352)
Q Consensus 380 ~~~~lLatGs~DG~ 393 (1352)
++.+++++++--.
T Consensus 384 -~g~~~atcGdr~v 396 (420)
T KOG2096|consen 384 -DGKYIATCGDRYV 396 (420)
T ss_pred -CCcEEeeecceee
Confidence 5777877776443
No 78
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.86 E-value=5.1e-18 Score=194.63 Aligned_cols=205 Identities=20% Similarity=0.225 Sum_probs=145.2
Q ss_pred EEEEEecCcEEEEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCC
Q 000685 135 FLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGS 214 (1352)
Q Consensus 135 lLasgs~D~~I~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~ 214 (1352)
.++.++.||.+.+=-+.++. -.....|.+.+.|-.| ++||.-|++.+.||.|++|. ++|-+..++. ....+
T Consensus 77 ~~~i~s~DGkf~il~k~~rV--E~sv~AH~~A~~~gRW-----~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~-Q~~~~ 147 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKSARV--ERSISAHAAAISSGRW-----SPDGAGLLTAGEDGVIKIWS-RSGMLRSTVV-QNEES 147 (737)
T ss_pred eEEEEcCCceEEEecccchh--hhhhhhhhhhhhhccc-----CCCCceeeeecCCceEEEEe-ccchHHHHHh-hcCce
Confidence 56666666666442233332 2345789999999999 78999999999999999998 4454433333 56779
Q ss_pred eeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEE
Q 000685 215 ISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWD 294 (1352)
Q Consensus 215 V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWD 294 (1352)
|.|++| .|+.+.++-|- .+.+.+=.+..... ...+++|++-|.++.|++ ..++|++||.|...+|||
T Consensus 148 v~c~~W---~p~S~~vl~c~-g~h~~IKpL~~n~k------~i~WkAHDGiiL~~~W~~---~s~lI~sgGED~kfKvWD 214 (737)
T KOG1524|consen 148 IRCARW---APNSNSIVFCQ-GGHISIKPLAANSK------IIRWRAHDGLVLSLSWST---QSNIIASGGEDFRFKIWD 214 (737)
T ss_pred eEEEEE---CCCCCceEEec-CCeEEEeecccccc------eeEEeccCcEEEEeecCc---cccceeecCCceeEEeec
Confidence 999996 45544444432 33444444433222 233689999999999999 688999999999999999
Q ss_pred CCCCeEEEEecCCCcccccCCceeEEEeCCCCCEEEEecCCeEEeccCCcccccccCccccCCCCCCeEEecCCcccEEE
Q 000685 295 TVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYC 374 (1352)
Q Consensus 295 l~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lLS~s~Dg~IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~ 374 (1352)
-. |..+.. -..|.-+|++++|+|+..++. |..++. .+.......|..
T Consensus 215 ~~-G~~Lf~------S~~~ey~ITSva~npd~~~~v-------~S~nt~-------------------R~~~p~~GSifn 261 (737)
T KOG1524|consen 215 AQ-GANLFT------SAAEEYAITSVAFNPEKDYLL-------WSYNTA-------------------RFSSPRVGSIFN 261 (737)
T ss_pred cc-Cccccc------CChhccceeeeeeccccceee-------eeeeee-------------------eecCCCccceEE
Confidence 65 555544 367889999999999954554 444422 122222237999
Q ss_pred EEEecCCCcEEEEEECCCeEE
Q 000685 375 MVAHSLQPHLVATGTNVGVII 395 (1352)
Q Consensus 375 la~sp~~~~lLatGs~DG~Il 395 (1352)
++|++ ++..+++|+..|.++
T Consensus 262 lsWS~-DGTQ~a~gt~~G~v~ 281 (737)
T KOG1524|consen 262 LSWSA-DGTQATCGTSTGQLI 281 (737)
T ss_pred EEEcC-CCceeeccccCceEE
Confidence 99999 788899999999975
No 79
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1e-20 Score=221.52 Aligned_cols=243 Identities=15% Similarity=0.246 Sum_probs=196.2
Q ss_pred CCCCEE---EEEEc-CCCCEEEEEeCCCcEEEEECCCCc------EEEEEeccCccceEEe--ccccceeEecccccCCC
Q 000685 10 TNDKIV---KIQLH-PTHPWLVTADASDHVSVWNWEHRQ------VIYELKAGGVDQRRLV--GAKLEKLAEGELEHKGK 77 (1352)
Q Consensus 10 Hs~~V~---~lafS-Pdg~~LaTgs~DG~VrVWDl~tg~------~i~t~~~~~~~~i~~v--s~dg~~Lasgs~d~~g~ 77 (1352)
|...|. .+..+ |.+++|+|||.||.|++|+..... ++.+++ +|.+.+.-+ +.+++.|++++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme-~HsDWVNDiiL~~~~~tlIS~S------ 92 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASME-HHSDWVNDIILCGNGKTLISAS------ 92 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhh-hhHhHHhhHHhhcCCCceEEec------
Confidence 444555 45555 456689999999999999975322 355555 667776543 37778888887
Q ss_pred ccccccCCceEEEEEcCCeEEEEEcCCcc--ccccccccccccCCCCeeeeee-cCCCCeEEEEEecCcEE-EEEeeCCc
Q 000685 78 PTEAMRGGSVKQVNFYDDDVRFWQLWRNR--AAAAEAPTAVSNVTSGFASPPP-STKGRHFLVICCVNKAI-FLDLVTMR 153 (1352)
Q Consensus 78 ~l~~l~~g~V~sVaF~Dg~IrlWDl~t~~--~i~~~~~~~~~~~~~~V~slaf-spdg~~lLasgs~D~~I-~wDl~t~~ 153 (1352)
.|-+|++|+..... |+ ...+.|..+|.|+++ .++.. ++++|+-|+.| +||++++.
T Consensus 93 ---------------sDtTVK~W~~~~~~~~c~-----stir~H~DYVkcla~~ak~~~-lvaSgGLD~~IflWDin~~~ 151 (735)
T KOG0308|consen 93 ---------------SDTTVKVWNAHKDNTFCM-----STIRTHKDYVKCLAYIAKNNE-LVASGGLDRKIFLWDINTGT 151 (735)
T ss_pred ---------------CCceEEEeecccCcchhH-----hhhhcccchheeeeecccCce-eEEecCCCccEEEEEccCcc
Confidence 68899999998773 43 344555999999999 55554 99999988887 77998763
Q ss_pred cc--------ccccc-ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeC
Q 000685 154 GR--------DIPKQ-ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMAS 224 (1352)
Q Consensus 154 ~~--------~i~~~-~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s 224 (1352)
.. ..... .++...|++++. ++.|..|++|+..+.+++||.++++.+..+. ||+..|.++. .+
T Consensus 152 ~~l~~s~n~~t~~sl~sG~k~siYSLA~-----N~t~t~ivsGgtek~lr~wDprt~~kimkLr-GHTdNVr~ll---~~ 222 (735)
T KOG0308|consen 152 ATLVASFNNVTVNSLGSGPKDSIYSLAM-----NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR-GHTDNVRVLL---VN 222 (735)
T ss_pred hhhhhhccccccccCCCCCccceeeeec-----CCcceEEEecCcccceEEeccccccceeeee-ccccceEEEE---Ec
Confidence 21 11112 267789999999 6788899999999999999999999999998 9999999996 89
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCC
Q 000685 225 SGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSF 298 (1352)
Q Consensus 225 ~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg 298 (1352)
.+|+.++|+|.||+|++||+...+|+.+ +..|+.+|+++..+| +-..+.+|+.||.|..=|+++.
T Consensus 223 dDGt~~ls~sSDgtIrlWdLgqQrCl~T------~~vH~e~VWaL~~~~---sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 223 DDGTRLLSASSDGTIRLWDLGQQRCLAT------YIVHKEGVWALQSSP---SFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred CCCCeEeecCCCceEEeeeccccceeee------EEeccCceEEEeeCC---CcceEEecCCCCcEEecccCCc
Confidence 9999999999999999999998888765 688999999999998 7889999999999999999884
No 80
>PTZ00421 coronin; Provisional
Probab=99.86 E-value=2.2e-19 Score=220.02 Aligned_cols=256 Identities=13% Similarity=0.115 Sum_probs=186.5
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCCceEE
Q 000685 10 TNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQ 89 (1352)
Q Consensus 10 Hs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~s 89 (1352)
|...|+...+++++..+++++.+.....|+...|..+..+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~--------------------------------------- 59 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHT--------------------------------------- 59 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeecc---------------------------------------
Confidence 45567777888888888888899999999865433221111
Q ss_pred EEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecC-CCCeEEEEEecCcEE-EEEeeCCcc-----cccccccc
Q 000685 90 VNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPST-KGRHFLVICCVNKAI-FLDLVTMRG-----RDIPKQEL 162 (1352)
Q Consensus 90 VaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafsp-dg~~lLasgs~D~~I-~wDl~t~~~-----~~i~~~~~ 162 (1352)
..++.. ...+...+| ...|.+++|+| +++ +|++|+.|+.| +||+.++.. ..+..+..
T Consensus 60 -------------~~G~~~-~~~~~l~GH-~~~V~~v~fsP~d~~-~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~g 123 (493)
T PTZ00421 60 -------------DYGKLA-SNPPILLGQ-EGPIIDVAFNPFDPQ-KLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQG 123 (493)
T ss_pred -------------ccccCC-CCCceEeCC-CCCEEEEEEcCCCCC-EEEEEeCCCEEEEEecCCCccccccCcceEEecC
Confidence 111110 001223344 88899999999 665 89999999999 678765421 12345678
Q ss_pred CCCCeEEEEEeeccccCCC-CEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEE
Q 000685 163 DNKSLVCMEFLSRSAVGDV-PLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1352)
Q Consensus 163 h~~~V~~vaf~P~s~Spdg-~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrV 241 (1352)
|...|.+++|+ |++ ++|++|+.|++|+|||+++++.+..+. +|...|.+++ +++++.+|++|+.|++|++
T Consensus 124 H~~~V~~l~f~-----P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~-~h~~~V~sla---~spdG~lLatgs~Dg~IrI 194 (493)
T PTZ00421 124 HTKKVGIVSFH-----PSAMNVLASAGADMVVNVWDVERGKAVEVIK-CHSDQITSLE---WNLDGSLLCTTSKDKKLNI 194 (493)
T ss_pred CCCcEEEEEeC-----cCCCCEEEEEeCCCEEEEEECCCCeEEEEEc-CCCCceEEEE---EECCCCEEEEecCCCEEEE
Confidence 99999999994 454 699999999999999999999888886 8999999998 5889999999999999999
Q ss_pred EeCCCCCccceecccccccccccc-eEEEEeeccCCCCCEEEEEE----CCCcEEEEECCCCe-EEEEecCCCcccccCC
Q 000685 242 WSADHGQDSRELVPKLSLKAHDGG-VVAVELSRVMGGSPQLITIG----ADKTLAIWDTVSFK-ELRRIKPVPKLACHSV 315 (1352)
Q Consensus 242 WDl~tg~~~~~~~~~~~l~gH~~~-V~slafsp~~~dg~~LaSgs----~DgtV~IWDl~tg~-~l~~~~~~~~l~~hs~ 315 (1352)
||+++++.+.. +.+|.+. +..+.|++ ++..|++++ .|+.|++||+++.. .+.... ..+..
T Consensus 195 wD~rsg~~v~t------l~~H~~~~~~~~~w~~---~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~-----~d~~~ 260 (493)
T PTZ00421 195 IDPRDGTIVSS------VEAHASAKSQRCLWAK---RKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD-----LDQSS 260 (493)
T ss_pred EECCCCcEEEE------EecCCCCcceEEEEcC---CCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec-----cCCCC
Confidence 99999876544 5778764 45677888 556666654 48999999998754 332210 12233
Q ss_pred ceeEEEeCCCCCEE-EEe-cCCe--EEeccCC
Q 000685 316 ASWCHPRAPNLDIL-TCV-KDSH--IWAIEHP 343 (1352)
Q Consensus 316 ~V~svafspdg~lL-S~s-~Dg~--IWDi~t~ 343 (1352)
.+....|++++.++ ++| .|+. +||+.++
T Consensus 261 ~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 261 ALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred ceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 45567789998865 555 4885 7999865
No 81
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.86 E-value=8e-19 Score=205.98 Aligned_cols=454 Identities=14% Similarity=0.158 Sum_probs=281.2
Q ss_pred EecCCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCcEEEEEeccCccceEEec--cccceeEecccccCCCcccc
Q 000685 6 AFRPTNDKIVKIQLHPTHPWLVTAD--ASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEA 81 (1352)
Q Consensus 6 ~L~gHs~~V~~lafSPdg~~LaTgs--~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~~ 81 (1352)
.+..|...++|++||++|+|++||- ....++||++..-..+.+|..| .-.+.++. |.++++++.+..
T Consensus 73 lvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdH-KY~vtcvaFsp~~kyvvSVGsQ-------- 143 (1080)
T KOG1408|consen 73 LVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDH-KYNVTCVAFSPGNKYVVSVGSQ-------- 143 (1080)
T ss_pred eecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhc-cccceeeeecCCCcEEEeeccc--------
Confidence 3566778999999999999999985 6788999999988788888744 44555555 778888776433
Q ss_pred ccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEEEeeCCccc--cccc
Q 000685 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGR--DIPK 159 (1352)
Q Consensus 82 l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl~t~~~~--~i~~ 159 (1352)
+|-.|.+||++.+... ........|..++|+.+|. ++++.+.-++-.|.++.++.- .++.
T Consensus 144 -----------HDMIVnv~dWr~N~~~------asnkiss~Vsav~fsEdgS-YfvT~gnrHvk~wyl~~~~KykdpiPl 205 (1080)
T KOG1408|consen 144 -----------HDMIVNVNDWRVNSSG------ASNKISSVVSAVAFSEDGS-YFVTSGNRHVKLWYLQIQSKYKDPIPL 205 (1080)
T ss_pred -----------cceEEEhhhhhhcccc------cccccceeEEEEEEccCCc-eeeeeeeeeEEEEEeeccccccCCccc
Confidence 5778899988765332 2233367899999999997 888888888888865543310 0000
Q ss_pred ---------------------------------cccC-----------------CCCeEEEEEeeccccCCCCEEEEEEC
Q 000685 160 ---------------------------------QELD-----------------NKSLVCMEFLSRSAVGDVPLVAFGSS 189 (1352)
Q Consensus 160 ---------------------------------~~~h-----------------~~~V~~vaf~P~s~Spdg~~LasGs~ 189 (1352)
..+| ....+||+. ..++|++|+.
T Consensus 206 ~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV-------s~r~I~cgCa 278 (1080)
T KOG1408|consen 206 PGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV-------SSRLIACGCA 278 (1080)
T ss_pred cchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee-------ecceEEEeec
Confidence 0000 011233444 5789999999
Q ss_pred CCcEEEEECCCCeEEEEEecCC---------------------CCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCC
Q 000685 190 DGVIRVLSMISWKLVRRYTGGH---------------------KGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQ 248 (1352)
Q Consensus 190 DGtIrIWDl~t~~~i~~l~~gH---------------------~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~ 248 (1352)
+|.|++|+..+-..+.++...| ...--+|+ +.|++...+|...-.|..++|||++.-+
T Consensus 279 ~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA-~~Fdet~~klscVYndhSlYvWDvrD~~ 357 (1080)
T KOG1408|consen 279 KGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIA-CQFDETTDKLSCVYNDHSLYVWDVRDVN 357 (1080)
T ss_pred cceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeE-EEecCCCceEEEEEcCceEEEEeccccc
Confidence 9999999987654444332111 11122343 3488888999999999999999999765
Q ss_pred ccceecccccccccccceEEEEeecc-CC-------CCCEEEEEECCCcEEEEECCCCeEEEEecC--------------
Q 000685 249 DSRELVPKLSLKAHDGGVVAVELSRV-MG-------GSPQLITIGADKTLAIWDTVSFKELRRIKP-------------- 306 (1352)
Q Consensus 249 ~~~~~~~~~~l~gH~~~V~slafsp~-~~-------dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~-------------- 306 (1352)
.+.+ ...+--|...|+.+.--|. .. -...++|++.|++||+||+..+..-..+..
T Consensus 358 kvgk---~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d 434 (1080)
T KOG1408|consen 358 KVGK---CSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYED 434 (1080)
T ss_pred cccc---eeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCcccc
Confidence 5443 2335668888988886661 00 024589999999999999986321111100
Q ss_pred -----------------CCcccccCCceeEEEeCCCCCEEEEecC-C--eEEeccCCcccccccCccccCCCCCCeEEec
Q 000685 307 -----------------VPKLACHSVASWCHPRAPNLDILTCVKD-S--HIWAIEHPTYSALTRPLCELSSLVPPQVLAH 366 (1352)
Q Consensus 307 -----------------~~~l~~hs~~V~svafspdg~lLS~s~D-g--~IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~ 366 (1352)
.....+....+.+++.+|+|+.|+.|.- | +|+++....+ ...+..
T Consensus 435 ~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~---------------~~~~eA 499 (1080)
T KOG1408|consen 435 STQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY---------------TCFMEA 499 (1080)
T ss_pred CchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh---------------hhheec
Confidence 0011233457899999999998866544 3 4899875432 345667
Q ss_pred CCcccEEEEEEecC--CCcEEEEEECCCeEEEEecCCCCC-CccccCCCCCCCCceEEEEecC-eEEEEEeeeccCCCCC
Q 000685 367 HKKLRVYCMVAHSL--QPHLVATGTNVGVIISEFDPRSLP-AVAPLPTPSGSRDHSAVYIVER-ELKLVNFQLSSAANPS 442 (1352)
Q Consensus 367 h~~~~V~~la~sp~--~~~lLatGs~DG~IlriWd~~~~p-~i~~l~~~s~s~~~~~~~~~~~-~lkl~~fq~~~~~n~~ 442 (1352)
|.. .|.|+.++.. ...+||+++.|..| +++|....- .+.++...+.+ -.++-|.-.+ ..++............
T Consensus 500 Hes-EilcLeyS~p~~~~kLLASasrdRlI-HV~Dv~rny~l~qtld~HSss-ITsvKFa~~gln~~MiscGADksimFr 576 (1080)
T KOG1408|consen 500 HES-EILCLEYSFPVLTNKLLASASRDRLI-HVYDVKRNYDLVQTLDGHSSS-ITSVKFACNGLNRKMISCGADKSIMFR 576 (1080)
T ss_pred ccc-eeEEEeecCchhhhHhhhhccCCceE-EEEecccccchhhhhcccccc-eeEEEEeecCCceEEEeccCchhhhee
Confidence 777 8999999953 34689999999997 899976432 23333221211 1233343333 2332221100000000
Q ss_pred CCCCcccccCCcccCCCchhhhhhhccccccccCCCCCccEEEEcCCCCEEEEEECCCCcEEEEEeCCceEee-------
Q 000685 443 LGNNGSLSETGRLKGDLPDALQIKQIKKHISTPVPHDSYSILSVSSSGKYLAVVWPDIPYFSVYKVSDWSIVD------- 515 (1352)
Q Consensus 443 ~g~~~~~s~~G~~~~~~~~~l~v~~~~r~i~t~~~~e~~s~l~~SpdGrylavv~~~~g~y~Iy~i~~~~~i~------- 515 (1352)
.+- -+.+|+ +..|.-. .+.+...--+.+-|+-+|+ +....+..+.||.+.+.+++.
T Consensus 577 --~~q-k~~~g~------------~f~r~t~-t~~ktTlYDm~Vdp~~k~v-~t~cQDrnirif~i~sgKq~k~FKgs~~ 639 (1080)
T KOG1408|consen 577 --VNQ-KASSGR------------LFPRHTQ-TLSKTTLYDMAVDPTSKLV-VTVCQDRNIRIFDIESGKQVKSFKGSRD 639 (1080)
T ss_pred --hhc-cccCce------------ecccccc-ccccceEEEeeeCCCcceE-EEEecccceEEEeccccceeeeeccccc
Confidence 000 000111 0011000 1111111157889999999 555678899999998876644
Q ss_pred -ccceeEEEeccCCCeEE
Q 000685 516 -SGSARLLAWDTCRDRFA 532 (1352)
Q Consensus 516 -~G~~~~~aWs~~~~~fA 532 (1352)
.|...-+.-+|.+...|
T Consensus 640 ~eG~lIKv~lDPSgiY~a 657 (1080)
T KOG1408|consen 640 HEGDLIKVILDPSGIYLA 657 (1080)
T ss_pred CCCceEEEEECCCccEEE
Confidence 34455566666554333
No 82
>PTZ00420 coronin; Provisional
Probab=99.86 E-value=2.2e-19 Score=221.24 Aligned_cols=242 Identities=10% Similarity=0.110 Sum_probs=174.7
Q ss_pred eEEecCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCcE-EEEEeccCccceEEeccccceeEecccccCCCcccc
Q 000685 4 LKAFRPTNDKIVKIQLHPT-HPWLVTADASDHVSVWNWEHRQV-IYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEA 81 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPd-g~~LaTgs~DG~VrVWDl~tg~~-i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~ 81 (1352)
+..|.+|.+.|.+++|+|+ +.+|+||+.||+|+|||+.++.. +..+. .
T Consensus 67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~-~----------------------------- 116 (568)
T PTZ00420 67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK-D----------------------------- 116 (568)
T ss_pred EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc-c-----------------------------
Confidence 5679999999999999997 78999999999999999875321 11000 0
Q ss_pred ccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCcccccccc
Q 000685 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQ 160 (1352)
Q Consensus 82 l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~ 160 (1352)
+ + ....+ |...|.+++|+|++..++++++.|+.+ +||+.+++.. ...
T Consensus 117 ----p----------~---------------~~L~g-H~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~--~~i 164 (568)
T PTZ00420 117 ----P----------Q---------------CILKG-HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRA--FQI 164 (568)
T ss_pred ----c----------e---------------EEeec-CCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEE--EEE
Confidence 0 0 01112 367799999999998677899988888 6799887532 222
Q ss_pred ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEE-Ee-eeCCCCCEEEEEeCCC-
Q 000685 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLM-TF-MASSGEALLVSGGSDG- 237 (1352)
Q Consensus 161 ~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~sla-wf-~~s~dg~~LaSgS~DG- 237 (1352)
.+...|.+++| +++|.+|++++.|+.|+|||+++++.+..+. +|.+.+.+.. |+ .+++++.+|++++.|+
T Consensus 165 -~~~~~V~Slsw-----spdG~lLat~s~D~~IrIwD~Rsg~~i~tl~-gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~ 237 (568)
T PTZ00420 165 -NMPKKLSSLKW-----NIKGNLLSGTCVGKHMHIIDPRKQEIASSFH-IHDGGKNTKNIWIDGLGGDDNYILSTGFSKN 237 (568)
T ss_pred -ecCCcEEEEEE-----CCCCCEEEEEecCCEEEEEECCCCcEEEEEe-cccCCceeEEEEeeeEcCCCCEEEEEEcCCC
Confidence 25678999999 7799999999999999999999999988887 8988765543 22 2457888999988774
Q ss_pred ---cEEEEeCCC-CCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCccccc
Q 000685 238 ---LLILWSADH-GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACH 313 (1352)
Q Consensus 238 ---tVrVWDl~t-g~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~h 313 (1352)
+|++||+++ ++.+.. ..+..+.+.+.. .|.+ +++.++++|+.|++|++|++..+. +..+. .. .+
T Consensus 238 ~~R~VkLWDlr~~~~pl~~----~~ld~~~~~L~p-~~D~--~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~---~~-~s 305 (568)
T PTZ00420 238 NMREMKLWDLKNTTSALVT----MSIDNASAPLIP-HYDE--STGLIYLIGKGDGNCRYYQHSLGS-IRKVN---EY-KS 305 (568)
T ss_pred CccEEEEEECCCCCCceEE----EEecCCccceEE-eeeC--CCCCEEEEEECCCeEEEEEccCCc-EEeec---cc-cc
Confidence 799999986 333322 122333333322 3333 368899999999999999998764 33322 12 25
Q ss_pred CCceeEEEeCCCC
Q 000685 314 SVASWCHPRAPNL 326 (1352)
Q Consensus 314 s~~V~svafspdg 326 (1352)
..++.+++|.|..
T Consensus 306 ~~p~~g~~f~Pkr 318 (568)
T PTZ00420 306 CSPFRSFGFLPKQ 318 (568)
T ss_pred CCCccceEEcccc
Confidence 5667788998864
No 83
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.85 E-value=6.1e-21 Score=214.00 Aligned_cols=281 Identities=16% Similarity=0.171 Sum_probs=219.0
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--EEEEEeccCccceEEec--cccceeEecccccCCCccc
Q 000685 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQ--VIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTE 80 (1352)
Q Consensus 5 ~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~--~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~ 80 (1352)
..+..|.+.|..+.|-++...|+||+.|..|++|+...++ .+.++. +....+..+. ++++++++.+
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLa-Gs~g~it~~d~d~~~~~~iAas--------- 238 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLA-GSLGNITSIDFDSDNKHVIAAS--------- 238 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhh-ccCCCcceeeecCCCceEEeec---------
Confidence 4577899999999999998999999999999999987655 344444 3333444444 4455444433
Q ss_pred cccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccc
Q 000685 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPK 159 (1352)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~ 159 (1352)
.|+.+++|++...+.. .++.+| ...|+++.|..... .+++|+.|.++ .||+....|...
T Consensus 239 ------------~d~~~r~Wnvd~~r~~----~TLsGH-tdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~C~kt-- 298 (459)
T KOG0288|consen 239 ------------NDKNLRLWNVDSLRLR----HTLSGH-TDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAYCSKT-- 298 (459)
T ss_pred ------------CCCceeeeeccchhhh----hhhccc-ccceeeehhhcccc-ceeeccccchhhhhhhhhhheecc--
Confidence 6899999999998776 466665 99999999988665 59999999999 679987654332
Q ss_pred cccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcE
Q 000685 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1352)
Q Consensus 160 ~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtV 239 (1352)
......+..|.. ....+++|..|++||+||.++..+..... .| +.|+++. .+.++..|.+++.|.++
T Consensus 299 -~l~~S~cnDI~~-------~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~-~g-g~vtSl~---ls~~g~~lLsssRDdtl 365 (459)
T KOG0288|consen 299 -VLPGSQCNDIVC-------SISDVISGHFDKKVRFWDIRSADKTRSVP-LG-GRVTSLD---LSMDGLELLSSSRDDTL 365 (459)
T ss_pred -ccccccccceEe-------cceeeeecccccceEEEeccCCceeeEee-cC-cceeeEe---eccCCeEEeeecCCCce
Confidence 233445556665 25568899999999999999999988886 45 4999997 89999999999999999
Q ss_pred EEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCC-cee
Q 000685 240 ILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSV-ASW 318 (1352)
Q Consensus 240 rVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~-~V~ 318 (1352)
.+.|+++......+.......+|+ ++.+.|+| ++.|+++||.||.|+||++.++++...+. ..++. .|+
T Consensus 366 ~viDlRt~eI~~~~sA~g~k~asD--wtrvvfSp---d~~YvaAGS~dgsv~iW~v~tgKlE~~l~-----~s~s~~aI~ 435 (459)
T KOG0288|consen 366 KVIDLRTKEIRQTFSAEGFKCASD--WTRVVFSP---DGSYVAAGSADGSVYIWSVFTGKLEKVLS-----LSTSNAAIT 435 (459)
T ss_pred eeeecccccEEEEeeccccccccc--cceeEECC---CCceeeeccCCCcEEEEEccCceEEEEec-----cCCCCcceE
Confidence 999999877655544333344454 88999999 89999999999999999999999887742 12223 699
Q ss_pred EEEeCCCCC-EEEEecCCe--EE
Q 000685 319 CHPRAPNLD-ILTCVKDSH--IW 338 (1352)
Q Consensus 319 svafspdg~-lLS~s~Dg~--IW 338 (1352)
++.|+|.|. +++++.++. +|
T Consensus 436 s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 436 SLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred EEEEcCCCchhhcccCCcceEec
Confidence 999999998 557877764 67
No 84
>PTZ00421 coronin; Provisional
Probab=99.85 E-value=3.2e-19 Score=218.65 Aligned_cols=207 Identities=18% Similarity=0.235 Sum_probs=159.8
Q ss_pred ccccCCCCeEEEEEeeccccC-CCCEEEEEECCCcEEEEECCCC-------eEEEEEecCCCCCeeEEEEeeeCCC-CCE
Q 000685 159 KQELDNKSLVCMEFLSRSAVG-DVPLVAFGSSDGVIRVLSMISW-------KLVRRYTGGHKGSISCLMTFMASSG-EAL 229 (1352)
Q Consensus 159 ~~~~h~~~V~~vaf~P~s~Sp-dg~~LasGs~DGtIrIWDl~t~-------~~i~~l~~gH~~~V~slawf~~s~d-g~~ 229 (1352)
...+|.+.|++++| +| ++++|++|+.|++|++||+.++ ..+..+. +|...|.+++ ++|+ +++
T Consensus 70 ~l~GH~~~V~~v~f-----sP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~-gH~~~V~~l~---f~P~~~~i 140 (493)
T PTZ00421 70 ILLGQEGPIIDVAF-----NPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ-GHTKKVGIVS---FHPSAMNV 140 (493)
T ss_pred eEeCCCCCEEEEEE-----cCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEec-CCCCcEEEEE---eCcCCCCE
Confidence 46789999999999 56 7889999999999999999764 3455665 9999999998 5676 479
Q ss_pred EEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCc
Q 000685 230 LVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPK 309 (1352)
Q Consensus 230 LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~ 309 (1352)
|++|+.|++|++||+.+++.... +.+|...|++++|+| ++.+|++++.|++|+|||+++++.+..
T Consensus 141 LaSgs~DgtVrIWDl~tg~~~~~------l~~h~~~V~sla~sp---dG~lLatgs~Dg~IrIwD~rsg~~v~t------ 205 (493)
T PTZ00421 141 LASAGADMVVNVWDVERGKAVEV------IKCHSDQITSLEWNL---DGSLLCTTSKDKKLNIIDPRDGTIVSS------ 205 (493)
T ss_pred EEEEeCCCEEEEEECCCCeEEEE------EcCCCCceEEEEEEC---CCCEEEEecCCCEEEEEECCCCcEEEE------
Confidence 99999999999999998875443 678999999999999 799999999999999999999988777
Q ss_pred ccccCCce-eEEEeCCCCC-EEEEe----cCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCC
Q 000685 310 LACHSVAS-WCHPRAPNLD-ILTCV----KDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQ 381 (1352)
Q Consensus 310 l~~hs~~V-~svafspdg~-lLS~s----~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~ 381 (1352)
+.+|...+ ..+.|++++. ++++| .|+. |||+++.. .+......+....+....|++ +
T Consensus 206 l~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~--------------~p~~~~~~d~~~~~~~~~~d~-d 270 (493)
T PTZ00421 206 VEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA--------------SPYSTVDLDQSSALFIPFFDE-D 270 (493)
T ss_pred EecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC--------------CceeEeccCCCCceEEEEEcC-C
Confidence 46676543 4677888765 55554 3554 89998532 122222233333566677888 5
Q ss_pred CcEEEEEE-CCCeEEEEecCCCCCC
Q 000685 382 PHLVATGT-NVGVIISEFDPRSLPA 405 (1352)
Q Consensus 382 ~~lLatGs-~DG~IlriWd~~~~p~ 405 (1352)
+.++++|+ .||.| ++||++....
T Consensus 271 ~~~L~lggkgDg~I-riwdl~~~~~ 294 (493)
T PTZ00421 271 TNLLYIGSKGEGNI-RCFELMNERL 294 (493)
T ss_pred CCEEEEEEeCCCeE-EEEEeeCCce
Confidence 66666665 69997 8999886543
No 85
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.85 E-value=6.3e-20 Score=206.71 Aligned_cols=274 Identities=18% Similarity=0.285 Sum_probs=220.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec--cccceeEecccccCCCccccccCCceEE
Q 000685 12 DKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAMRGGSVKQ 89 (1352)
Q Consensus 12 ~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~~l~~g~V~s 89 (1352)
..|+++...|..+.++||+.|.++.++|..+++.+..++ +|.-.+..+. ++...+++++
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~-Gh~kki~~v~~~~~~~~v~~aS------------------ 280 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLK-GHTKKITSVKFHKDLDTVITAS------------------ 280 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhcc-CcceEEEEEEeccchhheeecC------------------
Confidence 578999999988899999999999999999999999998 5555554443 5666666654
Q ss_pred EEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEE-EeeCCccccccccccCCCCeE
Q 000685 90 VNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDNKSLV 168 (1352)
Q Consensus 90 VaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~w-Dl~t~~~~~i~~~~~h~~~V~ 168 (1352)
.|..|++|......+ +.....|...|+.+..+|.|+ +|+++++|+.+.+ |+.++....+..-+...-.++
T Consensus 281 ---ad~~i~vws~~~~s~-----~~~~~~h~~~V~~ls~h~tge-YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~t 351 (506)
T KOG0289|consen 281 ---ADEIIRVWSVPLSSE-----PTSSRPHEEPVTGLSLHPTGE-YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYT 351 (506)
T ss_pred ---CcceEEeeccccccC-----ccccccccccceeeeeccCCc-EEEEecCCceEEEEEccCCcEEEEEeeccccceeE
Confidence 588999999887765 345555689999999999998 9999999999977 999887644333233345689
Q ss_pred EEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCC
Q 000685 169 CMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQ 248 (1352)
Q Consensus 169 ~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~ 248 (1352)
+.+| +|||.++.+|+.||.|+|||+.+...+..|. +|+++|..++ |+.+|.+|++++.|+.|++||++..+
T Consensus 352 s~~f-----HpDgLifgtgt~d~~vkiwdlks~~~~a~Fp-ght~~vk~i~---FsENGY~Lat~add~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 352 SAAF-----HPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP-GHTGPVKAIS---FSENGYWLATAADDGSVKLWDLRKLK 422 (506)
T ss_pred EeeE-----cCCceEEeccCCCceEEEEEcCCccccccCC-CCCCceeEEE---eccCceEEEEEecCCeEEEEEehhhc
Confidence 9999 5699999999999999999999999888887 8999999998 89999999999999999999999877
Q ss_pred ccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECC--CCeEEEEecCCCcccccCCceeEEEeCCCC
Q 000685 249 DSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV--SFKELRRIKPVPKLACHSVASWCHPRAPNL 326 (1352)
Q Consensus 249 ~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~--tg~~l~~~~~~~~l~~hs~~V~svafspdg 326 (1352)
...++ .+. ...+|.++.|.+ .|.+|+.+|.|=+|++++-. +++++.. +..|++..+++.|....
T Consensus 423 n~kt~----~l~-~~~~v~s~~fD~---SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~------~~~~sg~st~v~Fg~~a 488 (506)
T KOG0289|consen 423 NFKTI----QLD-EKKEVNSLSFDQ---SGTYLGIAGSDLQVYICKKKTKSWTEIKE------LADHSGLSTGVRFGEHA 488 (506)
T ss_pred cccee----ecc-ccccceeEEEcC---CCCeEEeecceeEEEEEecccccceeeeh------hhhcccccceeeecccc
Confidence 55442 233 233799999998 79999999888888887743 3444443 57788788899998888
Q ss_pred CEE-EEecCCe
Q 000685 327 DIL-TCVKDSH 336 (1352)
Q Consensus 327 ~lL-S~s~Dg~ 336 (1352)
+++ ++|.|..
T Consensus 489 q~l~s~smd~~ 499 (506)
T KOG0289|consen 489 QYLASTSMDAI 499 (506)
T ss_pred eEEeeccchhh
Confidence 877 5666653
No 86
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=1e-19 Score=206.83 Aligned_cols=310 Identities=14% Similarity=0.177 Sum_probs=228.8
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCcccccc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~ 83 (1352)
++.+..|.-.|.||+++|++.++++++.||+|.=|++.+|+....+-... .+ +-+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~--ev---------~k~-------------- 189 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD--EV---------LKS-------------- 189 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc--hh---------hhh--------------
Confidence 56788999999999999999999999999999999999987653221110 00 000
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCcccccccccc
Q 000685 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1352)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~ 162 (1352)
.+... ......|...+.+++.++|++ +|++|+.|..+ +|+..+++- +..+..
T Consensus 190 --------------------~~~~~----k~~r~~h~keil~~avS~Dgk-ylatgg~d~~v~Iw~~~t~eh--v~~~~g 242 (479)
T KOG0299|consen 190 --------------------HGNPL----KESRKGHVKEILTLAVSSDGK-YLATGGRDRHVQIWDCDTLEH--VKVFKG 242 (479)
T ss_pred --------------------ccCCC----CcccccccceeEEEEEcCCCc-EEEecCCCceEEEecCcccch--hhcccc
Confidence 00000 011113367799999999998 99999999988 889888754 556899
Q ss_pred CCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEE
Q 000685 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1352)
Q Consensus 163 h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVW 242 (1352)
|.+.|.+++| -.....+++++.|++|++|++.....+.++. ||.+.|..|. ...-++.+..|+.|+++++|
T Consensus 243 hr~~V~~L~f-----r~gt~~lys~s~Drsvkvw~~~~~s~vetly-GHqd~v~~Id---aL~reR~vtVGgrDrT~rlw 313 (479)
T KOG0299|consen 243 HRGAVSSLAF-----RKGTSELYSASADRSVKVWSIDQLSYVETLY-GHQDGVLGID---ALSRERCVTVGGRDRTVRLW 313 (479)
T ss_pred cccceeeeee-----ecCccceeeeecCCceEEEehhHhHHHHHHh-CCccceeeec---hhcccceEEeccccceeEEE
Confidence 9999999999 3345679999999999999999988888888 9999999997 45566777778899999999
Q ss_pred eCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcc------cccCCc
Q 000685 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKL------ACHSVA 316 (1352)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l------~~hs~~ 316 (1352)
++..... ..+.+|.+.+-|++|-. ...+++||+||.|.+|++...+++.+....+.+ ..+...
T Consensus 314 Ki~eesq-------lifrg~~~sidcv~~In----~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~W 382 (479)
T KOG0299|consen 314 KIPEESQ-------LIFRGGEGSIDCVAFIN----DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFW 382 (479)
T ss_pred eccccce-------eeeeCCCCCeeeEEEec----ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccc
Confidence 9954432 23688999999999985 689999999999999999999888776443222 122347
Q ss_pred eeEEEeCCCCCEE-EEecCC--eEEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCe
Q 000685 317 SWCHPRAPNLDIL-TCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGV 393 (1352)
Q Consensus 317 V~svafspdg~lL-S~s~Dg--~IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~ 393 (1352)
|++++..|...++ +|+.+| +||-+..+.. ...++..+... ..|++++|++++..+++..+....
T Consensus 383 itsla~i~~sdL~asGS~~G~vrLW~i~~g~r-----------~i~~l~~ls~~--GfVNsl~f~~sgk~ivagiGkEhR 449 (479)
T KOG0299|consen 383 ITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR-----------AINLLYSLSLV--GFVNSLAFSNSGKRIVAGIGKEHR 449 (479)
T ss_pred eeeeEecccCceEEecCCCCceEEEEecCCcc-----------ccceeeecccc--cEEEEEEEccCCCEEEEecccccc
Confidence 8899999998877 678888 4899986511 11222333322 369999999954444444344433
Q ss_pred EEEEe
Q 000685 394 IISEF 398 (1352)
Q Consensus 394 IlriW 398 (1352)
+=|.|
T Consensus 450 lGRW~ 454 (479)
T KOG0299|consen 450 LGRWW 454 (479)
T ss_pred cceee
Confidence 32333
No 87
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.85 E-value=1.1e-19 Score=214.54 Aligned_cols=365 Identities=13% Similarity=0.122 Sum_probs=246.1
Q ss_pred eeEEecCCCCCEEEEEEcCCCC---EEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecc-ccc--CC
Q 000685 3 RLKAFRPTNDKIVKIQLHPTHP---WLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGE-LEH--KG 76 (1352)
Q Consensus 3 ~l~~L~gHs~~V~~lafSPdg~---~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs-~d~--~g 76 (1352)
++..++||.+.|.+++|...+. +|+|+|.|..||||.+.-+....+........ . -+++....... ... ..
T Consensus 183 ~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t--~-~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 183 RVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLT--T-LSNLPVFMILEEIQYRISF 259 (764)
T ss_pred EEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccc--c-ccCCceeeeeeeEEEEEeh
Confidence 4788999999999999997655 89999999999999975433211111000000 0 01111111000 000 00
Q ss_pred CccccccCCceEEEEE-----------cCCeEEEEEcCCccccc--cccccccccCCCCeeeeeecCCCCeEEEEEecCc
Q 000685 77 KPTEAMRGGSVKQVNF-----------YDDDVRFWQLWRNRAAA--AEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNK 143 (1352)
Q Consensus 77 ~~l~~l~~g~V~sVaF-----------~Dg~IrlWDl~t~~~i~--~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~ 143 (1352)
..+..-|..+|+++.| .|.++-+|...+..-+- ...-...++....+++.-|+|++..+++-|..++
T Consensus 260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg 339 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG 339 (764)
T ss_pred hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc
Confidence 0122223467777777 68899999876653221 1111122233456889999999984555555556
Q ss_pred EEEEE-eeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECC----CCeEEEEEecCCCCCeeEE
Q 000685 144 AIFLD-LVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI----SWKLVRRYTGGHKGSISCL 218 (1352)
Q Consensus 144 ~I~wD-l~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~----t~~~i~~l~~gH~~~V~sl 218 (1352)
...|- -+.......+...+|.+.|+.++| +|.|.+|++.+.|.+-|+|--- ++..+.+-. -|...++|+
T Consensus 340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W-----~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQ-iHGyDl~c~ 413 (764)
T KOG1063|consen 340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDW-----DPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQ-IHGYDLTCL 413 (764)
T ss_pred EEEEeccCccceeeccccccccccceeeee-----cCCCCEEEEeccccceeeecccccccceeeecccc-cccccceee
Confidence 66773 333333445567899999999999 6789999999999999998643 223333333 689999999
Q ss_pred EEeeeCCCCCEEEEEeCCCcEEEEeCCC-------------------------------------------CCc----c-
Q 000685 219 MTFMASSGEALLVSGGSDGLLILWSADH-------------------------------------------GQD----S- 250 (1352)
Q Consensus 219 awf~~s~dg~~LaSgS~DGtVrVWDl~t-------------------------------------------g~~----~- 250 (1352)
+ +-+....|++|.....+|+|+... |.. .
T Consensus 414 ~---~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~e 490 (764)
T KOG1063|consen 414 S---FVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAE 490 (764)
T ss_pred e---hccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeee
Confidence 7 344467899999999999998631 000 0
Q ss_pred ----------------------ceecccccccccccceEEEEeeccCCCCCEEEEEECC-----CcEEEEECCCCeEEEE
Q 000685 251 ----------------------RELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGAD-----KTLAIWDTVSFKELRR 303 (1352)
Q Consensus 251 ----------------------~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~D-----gtV~IWDl~tg~~l~~ 303 (1352)
.-|.....+.||...|++++.+| ++++++|++.. ..|++|+..+...++.
T Consensus 491 t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~---~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~ 567 (764)
T KOG1063|consen 491 TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP---TGNLIASACKSSLKEHAVIRLWNTANWLQVQE 567 (764)
T ss_pred cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC---CCCEEeehhhhCCccceEEEEEeccchhhhhe
Confidence 00111223568999999999999 89999999864 4589999998887765
Q ss_pred ecCCCcccccCCceeEEEeCCCCCEE-EEecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecC
Q 000685 304 IKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSL 380 (1352)
Q Consensus 304 ~~~~~~l~~hs~~V~svafspdg~lL-S~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~ 380 (1352)
+.+|+-.|+.++|||||++| +.|.|.+ ||....... ..........|.. .||...|+|
T Consensus 568 ------L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~-----------~e~~fa~~k~HtR-IIWdcsW~p- 628 (764)
T KOG1063|consen 568 ------LEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIK-----------DEFRFACLKAHTR-IIWDCSWSP- 628 (764)
T ss_pred ------ecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccc-----------hhhhhccccccce-EEEEcccCc-
Confidence 68999999999999999955 8999996 888754311 0111223556777 899999999
Q ss_pred CCcEEEEEECCCeEEEEecCCC
Q 000685 381 QPHLVATGTNVGVIISEFDPRS 402 (1352)
Q Consensus 381 ~~~lLatGs~DG~IlriWd~~~ 402 (1352)
+..+++|+|.|..| ++|....
T Consensus 629 de~~FaTaSRDK~V-kVW~~~~ 649 (764)
T KOG1063|consen 629 DEKYFATASRDKKV-KVWEEPD 649 (764)
T ss_pred ccceeEEecCCceE-EEEeccC
Confidence 67779999999998 7997654
No 88
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=3e-19 Score=212.01 Aligned_cols=263 Identities=12% Similarity=0.063 Sum_probs=208.5
Q ss_pred CCCcccccCCCCCCcchhhccccceeeecCCceeeEEeccCCCCCCCCcceEEEEEeCCEEEEEeCCCcEEEEEcChhhh
Q 000685 827 MPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHALSLSHPGI 906 (1352)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~l~~~~~ 906 (1352)
++||++++.=|..++|++.+|+++ ++|+.+| +++|+++-|.-=.||+|+.-||-+.-++.+..+++..+
T Consensus 715 LrdFvgle~Cd~~TRkaml~FSfy----------vtiG~MD-~AfksI~~IkS~~vW~nmA~McVkT~RLDVAkVClGhm 783 (1416)
T KOG3617|consen 715 LRDFVGLENCDESTRKAMLDFSFY----------VTIGSMD-AAFKSIQFIKSDSVWDNMASMCVKTRRLDVAKVCLGHM 783 (1416)
T ss_pred HHHhcCccccCHHHHHhhhceeEE----------EEeccHH-HHHHHHHHHhhhHHHHHHHHHhhhhccccHHHHhhhhh
Confidence 778999999999999999999999 9999999 89999888877777999999999998888888887766
Q ss_pred hhh-------------------HHHhc-----------------------------CCHHHHHHHHhhcChhh----HHH
Q 000685 907 RCR-------------------CLAAY-----------------------------GDSVSAVKWASRLGREH----HDD 934 (1352)
Q Consensus 907 ~f~-------------------~~~~~-----------------------------~d~~~a~~~~~~i~~~~----~~~ 934 (1352)
+-. +|++. |.|++|.++++..++.| |++
T Consensus 784 ~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~ 863 (1416)
T KOG3617|consen 784 KNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYN 863 (1416)
T ss_pred hhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHH
Confidence 532 22211 77777777777766655 677
Q ss_pred HHHHHHhCCcchhhcccccccCccEEEeecccccHHHHHHHHhhcccccccCCCCCCCCccccccccccchhhhhhhhhh
Q 000685 935 LAQFMLGMGYATEALHLPGISKRLEFDLAMQSNDLKRALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGI 1014 (1352)
Q Consensus 935 ~a~fl~~~G~~e~Al~~~~ds~~~kf~la~~~g~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1014 (1352)
.|+|||..|-.+-||+..+.+..|+||+-..+-+.--+++ +|+...++.
T Consensus 864 yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e--~Yv~~~~d~----------------------------- 912 (1416)
T KOG3617|consen 864 YAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIE--QYVRRKRDE----------------------------- 912 (1416)
T ss_pred HHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHH--HHHHhccch-----------------------------
Confidence 7777777777777777777777777777766643333332 233222221
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcccccccccchhhHHHHhccCChhHHHHHHHHHHHcCCcHHHHHH
Q 000685 1015 VKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFS 1094 (1352)
Q Consensus 1015 ~~~~~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~~af~ 1094 (1352)
++-+|| |++-.++|+.+-|...|..++ |+-+++.+.|..|+.++...+ |.+.|+. .+.|+
T Consensus 913 -~L~~WW---gqYlES~GemdaAl~~Y~~A~------------D~fs~VrI~C~qGk~~kAa~i---A~esgd~-AAcYh 972 (1416)
T KOG3617|consen 913 -SLYSWW---GQYLESVGEMDAALSFYSSAK------------DYFSMVRIKCIQGKTDKAARI---AEESGDK-AACYH 972 (1416)
T ss_pred -HHHHHH---HHHHhcccchHHHHHHHHHhh------------hhhhheeeEeeccCchHHHHH---HHhcccH-HHHHH
Confidence 233788 999999999999999999994 677889999999999988877 9999998 89999
Q ss_pred HH----HcCCHHHHHHHHHHcCCcHHHHHHHHHcCCCchHHHHHHHHHHHhhhcCCCCcchhhHHHHHHh
Q 000685 1095 AA----ILGDNALMEKAWQDTGMLAEAVLHAHAHGRPSLKNLVEAWNKMLQKEVDHTPTAKTDAAAAFLA 1160 (1352)
Q Consensus 1095 ~~----~lgd~~~~~~~l~~~~~~~~A~~~A~t~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~ 1160 (1352)
.+ -.||+.++|+.+-+..-|.-|++++|.++ +++- +|+ ..+.+.|+.++.+|.||-+
T Consensus 973 laR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd---~~d~--L~n----lal~s~~~d~v~aArYyEe 1033 (1416)
T KOG3617|consen 973 LARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEND---MKDR--LAN----LALMSGGSDLVSAARYYEE 1033 (1416)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC---HHHH--HHH----HHhhcCchhHHHHHHHHHH
Confidence 66 57899999999999999999999999999 3332 454 3456889999999999954
No 89
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.84 E-value=8.9e-18 Score=195.78 Aligned_cols=271 Identities=16% Similarity=0.208 Sum_probs=204.8
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec--cccceeEecccccCCCccccccCCceEEE
Q 000685 13 KIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAMRGGSVKQV 90 (1352)
Q Consensus 13 ~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~~l~~g~V~sV 90 (1352)
.|..++|-|||..|+.+ .+..+.|||...|..+.+++ +|.+.++++. .+|+.+++|+
T Consensus 14 ci~d~afkPDGsqL~lA-Ag~rlliyD~ndG~llqtLK-gHKDtVycVAys~dGkrFASG~------------------- 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILA-AGSRLLVYDTSDGTLLQPLK-GHKDTVYCVAYAKDGKRFASGS------------------- 72 (1081)
T ss_pred chheeEECCCCceEEEe-cCCEEEEEeCCCcccccccc-cccceEEEEEEccCCceeccCC-------------------
Confidence 89999999999988877 45678899999999999999 7789999998 8999999987
Q ss_pred EEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEEEeeCCccccccccccCCCCeEEE
Q 000685 91 NFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCM 170 (1352)
Q Consensus 91 aF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl~t~~~~~i~~~~~h~~~V~~v 170 (1352)
.|..|-+|.-.-. ......|.+.|.|+.|+|-.. .|++|+-+..-.|...... + ........+.|.
T Consensus 73 --aDK~VI~W~~klE-------G~LkYSH~D~IQCMsFNP~~h-~LasCsLsdFglWS~~qK~---V-~K~kss~R~~~C 138 (1081)
T KOG1538|consen 73 --ADKSVIIWTSKLE-------GILKYSHNDAIQCMSFNPITH-QLASCSLSDFGLWSPEQKS---V-SKHKSSSRIICC 138 (1081)
T ss_pred --CceeEEEeccccc-------ceeeeccCCeeeEeecCchHH-HhhhcchhhccccChhhhh---H-HhhhhheeEEEe
Confidence 6888999976543 234455688999999999886 8899988877788443321 1 112235678888
Q ss_pred EEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEE--ecCCCCCeeEEEEeeeCCC--CCEEEEEeCCCcEEEEeCCC
Q 000685 171 EFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRY--TGGHKGSISCLMTFMASSG--EALLVSGGSDGLLILWSADH 246 (1352)
Q Consensus 171 af~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l--~~gH~~~V~slawf~~s~d--g~~LaSgS~DGtVrVWDl~t 246 (1352)
+| ..||++++.|-.||+|.|-+-. ++....+ .+|.+.+|.+++|...+.. ...++......++.++.+.
T Consensus 139 sW-----tnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls- 211 (1081)
T KOG1538|consen 139 SW-----TNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS- 211 (1081)
T ss_pred ee-----cCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-
Confidence 99 7899999999999999998744 3332222 3467889999996422221 2578888888899988886
Q ss_pred CCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCC
Q 000685 247 GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNL 326 (1352)
Q Consensus 247 g~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg 326 (1352)
|+.+.. -+.-.-...|+.+.+ +|.+++.||.|+.+++|- +.|-.+.+ +......||.+...|++
T Consensus 212 G~~Igk------~r~L~FdP~CisYf~---NGEy~LiGGsdk~L~~fT-R~GvrLGT------vg~~D~WIWtV~~~PNs 275 (1081)
T KOG1538|consen 212 GKQIGK------DRALNFDPCCISYFT---NGEYILLGGSDKQLSLFT-RDGVRLGT------VGEQDSWIWTVQAKPNS 275 (1081)
T ss_pred ceeecc------cccCCCCchhheecc---CCcEEEEccCCCceEEEe-ecCeEEee------ccccceeEEEEEEccCC
Confidence 443331 012223356899999 899999999999999998 55666665 34456789999999999
Q ss_pred CEE-EEecCCeE--Eecc
Q 000685 327 DIL-TCVKDSHI--WAIE 341 (1352)
Q Consensus 327 ~lL-S~s~Dg~I--WDi~ 341 (1352)
+.+ .|+.||+| |++-
T Consensus 276 Q~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 276 QYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ceEEEEEccCeeehhhhH
Confidence 966 58899984 6554
No 90
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=4.1e-20 Score=216.58 Aligned_cols=280 Identities=17% Similarity=0.267 Sum_probs=215.7
Q ss_pred cccceeEecccccCCCccccccCCceEEEEEcCCeEEEEEcCCccccc-cccccccccCCCCeeeeeecCCCCeEEEEEe
Q 000685 62 AKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAA-AEAPTAVSNVTSGFASPPPSTKGRHFLVICC 140 (1352)
Q Consensus 62 ~dg~~Lasgs~d~~g~~l~~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~-~~~~~~~~~~~~~V~slafspdg~~lLasgs 140 (1352)
+.+++|.+|+ .||.|++|++....... ........+|..+|+.+....+++ .|++++
T Consensus 35 ~~~ryLfTgG---------------------RDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~-tlIS~S 92 (735)
T KOG0308|consen 35 PNGRYLFTGG---------------------RDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK-TLISAS 92 (735)
T ss_pred CCCceEEecC---------------------CCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC-ceEEec
Confidence 6677788776 69999999987654321 112345567799999999999997 788888
Q ss_pred cCcEE-EEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCC--eEEEE--------Eec
Q 000685 141 VNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW--KLVRR--------YTG 209 (1352)
Q Consensus 141 ~D~~I-~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~--~~i~~--------l~~ 209 (1352)
.|.+| +|+...+...+..+...|.++|.|+++. .++..++++|+.|+.|.+||++++ +.+.+ +..
T Consensus 93 sDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~----ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~s 168 (735)
T KOG0308|consen 93 SDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYI----AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGS 168 (735)
T ss_pred CCceEEEeecccCcchhHhhhhcccchheeeeec----ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCC
Confidence 88888 7787766545677789999999999993 457889999999999999999976 22222 223
Q ss_pred CCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCc
Q 000685 210 GHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKT 289 (1352)
Q Consensus 210 gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~Dgt 289 (1352)
|+...|++++ ..+.|..|++|+..+.+++||.++++.+.. +.||...|..+..++ ||..++++|.||+
T Consensus 169 G~k~siYSLA---~N~t~t~ivsGgtek~lr~wDprt~~kimk------LrGHTdNVr~ll~~d---DGt~~ls~sSDgt 236 (735)
T KOG0308|consen 169 GPKDSIYSLA---MNQTGTIIVSGGTEKDLRLWDPRTCKKIMK------LRGHTDNVRVLLVND---DGTRLLSASSDGT 236 (735)
T ss_pred CCccceeeee---cCCcceEEEecCcccceEEeccccccceee------eeccccceEEEEEcC---CCCeEeecCCCce
Confidence 7889999997 688889999999999999999999876554 789999999999998 8999999999999
Q ss_pred EEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEE-EEecCCeEEeccCCcccccccCccccCCCCCCeEEecCC
Q 000685 290 LAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHK 368 (1352)
Q Consensus 290 V~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lL-S~s~Dg~IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~ 368 (1352)
|++||+.-.+|+.+ +..|...||++..+|+-..+ +|+.|+.|+-..-..+. ... .+...
T Consensus 237 IrlWdLgqQrCl~T------~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~------------~~t-lick~- 296 (735)
T KOG0308|consen 237 IRLWDLGQQRCLAT------YIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPA------------KST-LICKE- 296 (735)
T ss_pred EEeeeccccceeee------EEeccCceEEEeeCCCcceEEecCCCCcEEecccCCch------------hhe-EeecC-
Confidence 99999999999988 58899999999999997755 89999986543321110 001 11111
Q ss_pred cccEEEEEEecCCCcEEEEEECCCeEEEEecCC
Q 000685 369 KLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1352)
Q Consensus 369 ~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~ 401 (1352)
+.+|..+..+..+ +-+.+++.|+.| +.|...
T Consensus 297 daPv~~l~~~~~~-~~~WvtTtds~I-~rW~~~ 327 (735)
T KOG0308|consen 297 DAPVLKLHLHEHD-NSVWVTTTDSSI-KRWKLE 327 (735)
T ss_pred CCchhhhhhcccc-CCceeeeccccc-eecCCc
Confidence 1245556655432 335888889997 688644
No 91
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.4e-19 Score=207.30 Aligned_cols=253 Identities=16% Similarity=0.221 Sum_probs=195.8
Q ss_pred CCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEE-EeeCCccccccccccCCCCeEEEEE
Q 000685 94 DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDNKSLVCMEF 172 (1352)
Q Consensus 94 Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~w-Dl~t~~~~~i~~~~~h~~~V~~vaf 172 (1352)
.-.+.+|+..+.... .....+...++++.|..||+ ++++|...|.+.+ |+.+. ..+.....|..+|..+.|
T Consensus 47 S~rvqly~~~~~~~~-----k~~srFk~~v~s~~fR~DG~-LlaaGD~sG~V~vfD~k~r--~iLR~~~ah~apv~~~~f 118 (487)
T KOG0310|consen 47 SVRVQLYSSVTRSVR-----KTFSRFKDVVYSVDFRSDGR-LLAAGDESGHVKVFDMKSR--VILRQLYAHQAPVHVTKF 118 (487)
T ss_pred ccEEEEEecchhhhh-----hhHHhhccceeEEEeecCCe-EEEccCCcCcEEEeccccH--HHHHHHhhccCceeEEEe
Confidence 446777877665443 22333466799999999998 9999999999955 96553 234557899999999999
Q ss_pred eeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCC-ccc
Q 000685 173 LSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQ-DSR 251 (1352)
Q Consensus 173 ~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~-~~~ 251 (1352)
+| .++..+++|++|+.+++||+.+......+. +|+++|.|.+| .+.++.+++|||.||+||+||++... .+.
T Consensus 119 ~~----~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~-~htDYVR~g~~--~~~~~hivvtGsYDg~vrl~DtR~~~~~v~ 191 (487)
T KOG0310|consen 119 SP----QDNTMLVSGSDDKVVKYWDLSTAYVQAELS-GHTDYVRCGDI--SPANDHIVVTGSYDGKVRLWDTRSLTSRVV 191 (487)
T ss_pred cc----cCCeEEEecCCCceEEEEEcCCcEEEEEec-CCcceeEeecc--ccCCCeEEEecCCCceEEEEEeccCCceeE
Confidence 65 367789999999999999999988755665 99999999984 46677899999999999999999763 222
Q ss_pred eecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCC-EEE
Q 000685 252 ELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-ILT 330 (1352)
Q Consensus 252 ~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~-lLS 330 (1352)
+ -.|..+|.++.+-| .+.+|+++|. ..|+|||+.+|..+-. .+..|...|+|+.+..++. +++
T Consensus 192 e-------lnhg~pVe~vl~lp---sgs~iasAgG-n~vkVWDl~~G~qll~-----~~~~H~KtVTcL~l~s~~~rLlS 255 (487)
T KOG0310|consen 192 E-------LNHGCPVESVLALP---SGSLIASAGG-NSVKVWDLTTGGQLLT-----SMFNHNKTVTCLRLASDSTRLLS 255 (487)
T ss_pred E-------ecCCCceeeEEEcC---CCCEEEEcCC-CeEEEEEecCCceehh-----hhhcccceEEEEEeecCCceEee
Confidence 2 45999999999999 6789988874 6899999996654333 1445999999999998876 779
Q ss_pred EecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEE
Q 000685 331 CVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVII 395 (1352)
Q Consensus 331 ~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~Il 395 (1352)
+|-|++ +||+.+-+ -+..+.. ..+|.+++.+| ++..++.|-.+|.+.
T Consensus 256 ~sLD~~VKVfd~t~~K---------------vv~s~~~--~~pvLsiavs~-dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 256 GSLDRHVKVFDTTNYK---------------VVHSWKY--PGPVLSIAVSP-DDQTVVIGMSNGLVS 304 (487)
T ss_pred cccccceEEEEccceE---------------EEEeeec--ccceeeEEecC-CCceEEEecccceee
Confidence 999996 79866431 1222222 23799999999 566699999999874
No 92
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2e-18 Score=189.60 Aligned_cols=285 Identities=15% Similarity=0.227 Sum_probs=219.8
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecc--CccceEEeccccceeEecccccCCCcccc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAG--GVDQRRLVGAKLEKLAEGELEHKGKPTEA 81 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~--~~~~i~~vs~dg~~Lasgs~d~~g~~l~~ 81 (1352)
-+.|+.-.+.|.++.|+++|.+|++++.|.+++|||..+|+.++++... +.+.+.+..++...+.+.. .
T Consensus 7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt-k-------- 77 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST-K-------- 77 (311)
T ss_pred ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC-C--------
Confidence 4567777899999999999999999999999999999999999998755 3344444445555544432 1
Q ss_pred ccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCcccccccc
Q 000685 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQ 160 (1352)
Q Consensus 82 l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~ 160 (1352)
.|.+||..++.+++.+ ....|| ...|.+++.+|-++ .+++++.|+.+ .||++..++.-+
T Consensus 78 -----------~d~tIryLsl~dNkyl----RYF~GH-~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~--- 137 (311)
T KOG1446|consen 78 -----------EDDTIRYLSLHDNKYL----RYFPGH-KKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGL--- 137 (311)
T ss_pred -----------CCCceEEEEeecCceE----EEcCCC-CceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceE---
Confidence 4889999999999887 456666 88999999999887 78888888777 679987665332
Q ss_pred ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCC--eEEEEEe--cCCCCCeeEEEEeeeCCCCCEEEEEeCC
Q 000685 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW--KLVRRYT--GGHKGSISCLMTFMASSGEALLVSGGSD 236 (1352)
Q Consensus 161 ~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~--~~i~~l~--~gH~~~V~slawf~~s~dg~~LaSgS~D 236 (1352)
.+...-..++| +|+|-++|++.....|++||++.. .+..++. .+.....+.+. |+++|+.++.+...
T Consensus 138 -l~~~~~pi~Af-----Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~---FS~dGK~iLlsT~~ 208 (311)
T KOG1446|consen 138 -LNLSGRPIAAF-----DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLE---FSPDGKSILLSTNA 208 (311)
T ss_pred -EecCCCcceeE-----CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeE---EcCCCCEEEEEeCC
Confidence 23333445788 789999999998889999999863 3333332 23455677776 89999999999999
Q ss_pred CcEEEEeCCCCCccceecccccccccccc---eEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccc-
Q 000685 237 GLLILWSADHGQDSRELVPKLSLKAHDGG---VVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLAC- 312 (1352)
Q Consensus 237 GtVrVWDl~tg~~~~~~~~~~~l~gH~~~---V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~- 312 (1352)
+.+++.|.-+|....+ +.+|... -.+.+|.| |++++++|+.||+|++|++.+|..+..+ .+
T Consensus 209 s~~~~lDAf~G~~~~t------fs~~~~~~~~~~~a~ftP---ds~Fvl~gs~dg~i~vw~~~tg~~v~~~------~~~ 273 (311)
T KOG1446|consen 209 SFIYLLDAFDGTVKST------FSGYPNAGNLPLSATFTP---DSKFVLSGSDDGTIHVWNLETGKKVAVL------RGP 273 (311)
T ss_pred CcEEEEEccCCcEeee------EeeccCCCCcceeEEECC---CCcEEEEecCCCcEEEEEcCCCcEeeEe------cCC
Confidence 9999999999986554 2333222 25778999 8999999999999999999999998885 34
Q ss_pred cCCceeEEEeCCCCCEEE-EecCCeEEecc
Q 000685 313 HSVASWCHPRAPNLDILT-CVKDSHIWAIE 341 (1352)
Q Consensus 313 hs~~V~svafspdg~lLS-~s~Dg~IWDi~ 341 (1352)
+...+.++.|+|...+++ ++..-.+|-..
T Consensus 274 ~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 274 NGGPVSCVRFNPRYAMFVSASSNLVFWLPD 303 (311)
T ss_pred CCCCccccccCCceeeeeecCceEEEEecc
Confidence 677888999999876554 44444578665
No 93
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1e-19 Score=193.33 Aligned_cols=276 Identities=18% Similarity=0.195 Sum_probs=205.7
Q ss_pred EEEEEcCCC-CEEEEE-------eCCCcEEEEECCCCcEEEEEec-cCccceEEec----cccceeEecccccCCCcccc
Q 000685 15 VKIQLHPTH-PWLVTA-------DASDHVSVWNWEHRQVIYELKA-GGVDQRRLVG----AKLEKLAEGELEHKGKPTEA 81 (1352)
Q Consensus 15 ~~lafSPdg-~~LaTg-------s~DG~VrVWDl~tg~~i~t~~~-~~~~~i~~vs----~dg~~Lasgs~d~~g~~l~~ 81 (1352)
.++.|||-- .+|+.+ ...|++.|-+....+-+.++.. .-.+..+-+. .+.+.++..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~----------- 80 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAAS----------- 80 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEe-----------
Confidence 578899842 244433 2368899999865554444432 2234444443 222222222
Q ss_pred ccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCcccccccc
Q 000685 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQ 160 (1352)
Q Consensus 82 l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~ 160 (1352)
.||++++||+..... .+.....| ...|.++.|++..+..+++++.|++| .|+....+ .+.++
T Consensus 81 -----------GDGSLrl~d~~~~s~---Pi~~~kEH-~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~--Sv~Tf 143 (311)
T KOG0277|consen 81 -----------GDGSLRLFDLTMPSK---PIHKFKEH-KREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN--SVQTF 143 (311)
T ss_pred -----------cCceEEEeccCCCCc---chhHHHhh-hhheEEeccccccceeEEeeccCCceEeecCCCCc--ceEee
Confidence 699999999654432 12333444 88999999999887788888999999 55665543 46678
Q ss_pred ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCC-CeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcE
Q 000685 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS-WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1352)
Q Consensus 161 ~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t-~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtV 239 (1352)
.+|...|....|+|. .+++++++|.||++++||++. ++.+ .+. .|...+.|+.|. .-+.+.++||+.|+.|
T Consensus 144 ~gh~~~Iy~a~~sp~----~~nlfas~Sgd~~l~lwdvr~~gk~~-~i~-ah~~Eil~cdw~--ky~~~vl~Tg~vd~~v 215 (311)
T KOG0277|consen 144 NGHNSCIYQAAFSPH----IPNLFASASGDGTLRLWDVRSPGKFM-SIE-AHNSEILCCDWS--KYNHNVLATGGVDNLV 215 (311)
T ss_pred cCCccEEEEEecCCC----CCCeEEEccCCceEEEEEecCCCcee-EEE-eccceeEeeccc--ccCCcEEEecCCCceE
Confidence 999999999999763 578999999999999999986 4443 365 899999999973 5567899999999999
Q ss_pred EEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCe-EEEEecCCCcccccCCcee
Q 000685 240 ILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK-ELRRIKPVPKLACHSVASW 318 (1352)
Q Consensus 240 rVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~-~l~~~~~~~~l~~hs~~V~ 318 (1352)
|+||+++-+ .|.+.+.+|.-.|..+.|+|. ...+|++++.|-++||||...+. ++.+ ...|+.-|.
T Consensus 216 r~wDir~~r-----~pl~eL~gh~~AVRkvk~Sph--~~~lLaSasYDmT~riw~~~~~ds~~e~------~~~HtEFv~ 282 (311)
T KOG0277|consen 216 RGWDIRNLR-----TPLFELNGHGLAVRKVKFSPH--HASLLASASYDMTVRIWDPERQDSAIET------VDHHTEFVC 282 (311)
T ss_pred EEEehhhcc-----ccceeecCCceEEEEEecCcc--hhhHhhhccccceEEecccccchhhhhh------hhccceEEe
Confidence 999999754 367789999999999999994 56799999999999999988554 3333 567899999
Q ss_pred EEEeCCC--CCEEEEecCCe--EEe
Q 000685 319 CHPRAPN--LDILTCVKDSH--IWA 339 (1352)
Q Consensus 319 svafspd--g~lLS~s~Dg~--IWD 339 (1352)
.+.|++. +.+.++|.|+. ||+
T Consensus 283 g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 283 GLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred ccccccccCceeeecccccceeeec
Confidence 9999986 33557899986 676
No 94
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=4.5e-19 Score=215.02 Aligned_cols=246 Identities=12% Similarity=0.131 Sum_probs=186.0
Q ss_pred cCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeC----------------------------C---c------------
Q 000685 118 NVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVT----------------------------M---R------------ 153 (1352)
Q Consensus 118 ~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t----------------------------~---~------------ 153 (1352)
.|.+.|+++.|++||+ +||+|+.|++| +|.+.. . +
T Consensus 265 ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 5589999999999998 99999999999 553322 0 0
Q ss_pred ---c------------ccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEE
Q 000685 154 ---G------------RDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCL 218 (1352)
Q Consensus 154 ---~------------~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~sl 218 (1352)
+ +.+..+.+|.+.|..+.| | ..++|+++|.|.+||+|++...+|++.| .|.++|+|+
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSW-----S-Kn~fLLSSSMDKTVRLWh~~~~~CL~~F--~HndfVTcV 415 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSW-----S-KNNFLLSSSMDKTVRLWHPGRKECLKVF--SHNDFVTCV 415 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheeccc-----c-cCCeeEeccccccEEeecCCCcceeeEE--ecCCeeEEE
Confidence 0 012234678889999999 3 5679999999999999999999999999 599999999
Q ss_pred EEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCC
Q 000685 219 MTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSF 298 (1352)
Q Consensus 219 awf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg 298 (1352)
+ +++.|.++|+|||.||.||||++...+.+. +..-..-|++++|.| +|++.+.|+.+|.+++|+....
T Consensus 416 a--FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~-------W~Dl~~lITAvcy~P---dGk~avIGt~~G~C~fY~t~~l 483 (712)
T KOG0283|consen 416 A--FNPVDDRYFISGSLDGKVRLWSISDKKVVD-------WNDLRDLITAVCYSP---DGKGAVIGTFNGYCRFYDTEGL 483 (712)
T ss_pred E--ecccCCCcEeecccccceEEeecCcCeeEe-------ehhhhhhheeEEecc---CCceEEEEEeccEEEEEEccCC
Confidence 8 367789999999999999999998766432 233347799999999 8999999999999999999877
Q ss_pred eEEEEecC----CCcccccCCceeEEEeCCCCC--EEEEecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCc-
Q 000685 299 KELRRIKP----VPKLACHSVASWCHPRAPNLD--ILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKK- 369 (1352)
Q Consensus 299 ~~l~~~~~----~~~l~~hs~~V~svafspdg~--lLS~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~- 369 (1352)
+....+.- ..+.. |. .|+.+.|.|... +|+.+.|.+ |+|.+.... +..|.+..+
T Consensus 484 k~~~~~~I~~~~~Kk~~-~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~l---------------v~KfKG~~n~ 546 (712)
T KOG0283|consen 484 KLVSDFHIRLHNKKKKQ-GK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDL---------------VHKFKGFRNT 546 (712)
T ss_pred eEEEeeeEeeccCcccc-Cc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhh---------------hhhhcccccC
Confidence 76554321 11112 22 799999998644 889999986 788854321 222322211
Q ss_pred ccEEEEEEecCCCcEEEEEECCCeEEEEecCCCC
Q 000685 370 LRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSL 403 (1352)
Q Consensus 370 ~~V~~la~sp~~~~lLatGs~DG~IlriWd~~~~ 403 (1352)
..=..-.|+. ++..|++|++|..| .+|+....
T Consensus 547 ~SQ~~Asfs~-Dgk~IVs~seDs~V-YiW~~~~~ 578 (712)
T KOG0283|consen 547 SSQISASFSS-DGKHIVSASEDSWV-YIWKNDSF 578 (712)
T ss_pred CcceeeeEcc-CCCEEEEeecCceE-EEEeCCCC
Confidence 1123356777 67889999999997 69997643
No 95
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.83 E-value=2.3e-19 Score=204.60 Aligned_cols=262 Identities=17% Similarity=0.218 Sum_probs=195.7
Q ss_pred CCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCcc--------ccccccccCCCCeEEEEEeeccccCCCCEEEEEEC
Q 000685 119 VTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRG--------RDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS 189 (1352)
Q Consensus 119 ~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~--------~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~ 189 (1352)
|.+.|+.+.+-|+.+.++++.+.++-+ +||+..... +.-..+.+|.+.-..+.|.+. ..-.+++|+.
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~----~~g~Lls~~~ 198 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQ----QEGTLLSGSD 198 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccc----cceeEeeccC
Confidence 477888899999998788888877776 668754322 112245778777778999542 3457999999
Q ss_pred CCcEEEEECCCCeE------EEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccc
Q 000685 190 DGVIRVLSMISWKL------VRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHD 263 (1352)
Q Consensus 190 DGtIrIWDl~t~~~------i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~ 263 (1352)
|++|++||+..... .+....+|+..|..++| ...+..+|++++.|+.+.|||++++. -.+.....+|.
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~--h~~h~~lF~sv~dd~~L~iwD~R~~~----~~~~~~~~ah~ 272 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAW--HPLHEDLFGSVGDDGKLMIWDTRSNT----SKPSHSVKAHS 272 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhc--cccchhhheeecCCCeEEEEEcCCCC----CCCcccccccC
Confidence 99999999975321 23334599999999996 34566799999999999999999741 12344578999
Q ss_pred cceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCC-EE-EEecCCe--EEe
Q 000685 264 GGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-IL-TCVKDSH--IWA 339 (1352)
Q Consensus 264 ~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~-lL-S~s~Dg~--IWD 339 (1352)
..|+|++|+|. ++.+|+|||.|++|++||+++.+. +...+.+|...|.+|.|+|+.. +| ++|.|++ |||
T Consensus 273 ~~vn~~~fnp~--~~~ilAT~S~D~tV~LwDlRnL~~-----~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWD 345 (422)
T KOG0264|consen 273 AEVNCVAFNPF--NEFILATGSADKTVALWDLRNLNK-----PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWD 345 (422)
T ss_pred CceeEEEeCCC--CCceEEeccCCCcEEEeechhccc-----CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEe
Confidence 99999999995 788999999999999999997553 2334799999999999999976 44 6789997 899
Q ss_pred ccCCcccccccCccccCCCCCC--eEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCC
Q 000685 340 IEHPTYSALTRPLCELSSLVPP--QVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1352)
Q Consensus 340 i~t~~~~~~~~~l~~~~~~~~~--~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~~ 402 (1352)
+..-.. ... -.+.....+. ..-.+|.. .|..+.|+|..+..|++.++|+.+ .||.+..
T Consensus 346 ls~ig~-eq~--~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~L-qIW~~s~ 405 (422)
T KOG0264|consen 346 LSRIGE-EQS--PEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIASVAEDNIL-QIWQMAE 405 (422)
T ss_pred cccccc-ccC--hhhhccCCcceeEEecCccc-ccccccCCCCCCeEEEEecCCceE-EEeeccc
Confidence 984211 000 1111122222 23345666 899999999999999999999885 9998653
No 96
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.82 E-value=2.2e-18 Score=206.99 Aligned_cols=356 Identities=15% Similarity=0.181 Sum_probs=230.6
Q ss_pred eEEecCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec--cccceeEecccccC-----
Q 000685 4 LKAFRPTNDKIVKIQLHPTHP-WLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHK----- 75 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~-~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~----- 75 (1352)
+.+|+.-.++|++++|.-||+ .|++|+..|.+.+||++..+.+..+...|.+.+.... +....+++.+.|..
T Consensus 237 l~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~v 316 (910)
T KOG1539|consen 237 LMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWV 316 (910)
T ss_pred EEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEE
Confidence 667777679999999999998 7788888899999999999888888766644443332 33334444432221
Q ss_pred -----C--Ccccc--ccCCceEEEEEcCCeEEEE-EcCCccccccc------ccccccc------------------CCC
Q 000685 76 -----G--KPTEA--MRGGSVKQVNFYDDDVRFW-QLWRNRAAAAE------APTAVSN------------------VTS 121 (1352)
Q Consensus 76 -----g--~~l~~--l~~g~V~sVaF~Dg~IrlW-Dl~t~~~i~~~------~~~~~~~------------------~~~ 121 (1352)
| +.++. -|..+..++.|++...+.. .....+..... .....++ ...
T Consensus 317 fD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p 396 (910)
T KOG1539|consen 317 FDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLP 396 (910)
T ss_pred eeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCC
Confidence 1 01111 1113333444432222111 11111111100 0000000 001
Q ss_pred CeeeeeecCCC----CeEEEEEecCcEE-EEEeeCCcc-ccc---cccccCCCCeEEEEEeeccccCCCCEEEEEECCCc
Q 000685 122 GFASPPPSTKG----RHFLVICCVNKAI-FLDLVTMRG-RDI---PKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGV 192 (1352)
Q Consensus 122 ~V~slafspdg----~~lLasgs~D~~I-~wDl~t~~~-~~i---~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGt 192 (1352)
.|..++|.... .+.+++.-++... .|++..... +.+ ..++.....+++++. ++.|++.+.|+..|.
T Consensus 397 ~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~v-----s~CGNF~~IG~S~G~ 471 (910)
T KOG1539|consen 397 PIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCV-----SFCGNFVFIGYSKGT 471 (910)
T ss_pred cceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEE-----eccCceEEEeccCCe
Confidence 23333332211 1122222222222 455443221 000 011112356777777 778999999999999
Q ss_pred EEEEECCCCeEEEEE--ecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEE
Q 000685 193 IRVLSMISWKLVRRY--TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVE 270 (1352)
Q Consensus 193 IrIWDl~t~~~i~~l--~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~sla 270 (1352)
|-+|++++|-...++ ...|.+.|+.++ ...-++.++|++.+|-+++||.........+ . -..++.++.
T Consensus 472 Id~fNmQSGi~r~sf~~~~ah~~~V~gla---~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l------~-l~~~~~~iv 541 (910)
T KOG1539|consen 472 IDRFNMQSGIHRKSFGDSPAHKGEVTGLA---VDGTNRLLVSAGADGILKFWDFKKKVLKKSL------R-LGSSITGIV 541 (910)
T ss_pred EEEEEcccCeeecccccCccccCceeEEE---ecCCCceEEEccCcceEEEEecCCcceeeee------c-cCCCcceee
Confidence 999999999888887 247999999997 6777889999999999999999987644432 1 234578888
Q ss_pred eeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEE-EEecCCe--EEeccCCcccc
Q 000685 271 LSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSA 347 (1352)
Q Consensus 271 fsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lL-S~s~Dg~--IWDi~t~~~~~ 347 (1352)
++. ...+++.+.+|-.|+++|+.+.+.++. +.||++.|+.++|||||+.| +++.|++ +||+-++..
T Consensus 542 ~hr---~s~l~a~~~ddf~I~vvD~~t~kvvR~------f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~l-- 610 (910)
T KOG1539|consen 542 YHR---VSDLLAIALDDFSIRVVDVVTRKVVRE------FWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTL-- 610 (910)
T ss_pred eee---hhhhhhhhcCceeEEEEEchhhhhhHH------hhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcce--
Confidence 887 678999999999999999998887777 68999999999999999955 8899996 799987631
Q ss_pred cccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCC
Q 000685 348 LTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1352)
Q Consensus 348 ~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~ 401 (1352)
+..+.- +.....+.|+| ++.+|||.+.|+.=+.+|.-+
T Consensus 611 -------------ID~~~v--d~~~~sls~SP-ngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 611 -------------IDGLLV--DSPCTSLSFSP-NGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred -------------eeeEec--CCcceeeEECC-CCCEEEEEEecCceEEEEEch
Confidence 222222 23688999999 678899999996555788533
No 97
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.82 E-value=5.2e-19 Score=192.11 Aligned_cols=273 Identities=16% Similarity=0.234 Sum_probs=202.1
Q ss_pred CCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CcEEEEEeccCccceEEec--cccceeEecccccCCCccccccC
Q 000685 9 PTNDKIVKIQLHP-THPWLVTADASDHVSVWNWEH-RQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAMRG 84 (1352)
Q Consensus 9 gHs~~V~~lafSP-dg~~LaTgs~DG~VrVWDl~t-g~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~~l~~ 84 (1352)
.-.+.|.+|+||| ...+++.+|.||+||+|+++. |..+.+....+...+..++ .+|..+.+|+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~------------- 91 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGG------------- 91 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeec-------------
Confidence 3467899999999 455777999999999999986 5555544444445555554 4555555544
Q ss_pred CceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCC-eEEEEEecCcEE-EEEeeCCcccccccccc
Q 000685 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGR-HFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1352)
Q Consensus 85 g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~-~lLasgs~D~~I-~wDl~t~~~~~i~~~~~ 162 (1352)
.|+.+++||+.+++.. ..+.|...|.++.|-+... .+|++|+.|+++ .||.+.... +.+. .
T Consensus 92 --------~Dk~~k~wDL~S~Q~~------~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p--v~t~-~ 154 (347)
T KOG0647|consen 92 --------CDKQAKLWDLASGQVS------QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP--VATL-Q 154 (347)
T ss_pred --------cCCceEEEEccCCCee------eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe--eeee-e
Confidence 6899999999999653 4566699999999976442 389999999999 558875432 2222 2
Q ss_pred CCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEE-EEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEE
Q 000685 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLV-RRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1352)
Q Consensus 163 h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i-~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrV 241 (1352)
-.+.+.++.. ....++++..+..|.+|+++++... +.....-.-.+.|++ ...+.+..+.|+-.|.+-+
T Consensus 155 LPeRvYa~Dv-------~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va---~f~d~~~~alGsiEGrv~i 224 (347)
T KOG0647|consen 155 LPERVYAADV-------LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVA---CFQDKDGFALGSIEGRVAI 224 (347)
T ss_pred ccceeeehhc-------cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEE---EEecCCceEeeeecceEEE
Confidence 3567777776 4678999999999999999765332 333333455678887 3445566699999999999
Q ss_pred EeCCCCCccceeccccccccccc---------ceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccc
Q 000685 242 WSADHGQDSRELVPKLSLKAHDG---------GVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLAC 312 (1352)
Q Consensus 242 WDl~tg~~~~~~~~~~~l~gH~~---------~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~ 312 (1352)
..+..+... ..++++.|.. .|++|+||| ....|+|+|.||++.+||-+....+.+ ...
T Consensus 225 q~id~~~~~----~nFtFkCHR~~~~~~~~VYaVNsi~FhP---~hgtlvTaGsDGtf~FWDkdar~kLk~------s~~ 291 (347)
T KOG0647|consen 225 QYIDDPNPK----DNFTFKCHRSTNSVNDDVYAVNSIAFHP---VHGTLVTAGSDGTFSFWDKDARTKLKT------SET 291 (347)
T ss_pred EecCCCCcc----CceeEEEeccCCCCCCceEEecceEeec---ccceEEEecCCceEEEecchhhhhhhc------cCc
Confidence 999886432 2455666762 488999999 467999999999999999877666655 477
Q ss_pred cCCceeEEEeCCCCCEE--EEecC
Q 000685 313 HSVASWCHPRAPNLDIL--TCVKD 334 (1352)
Q Consensus 313 hs~~V~svafspdg~lL--S~s~D 334 (1352)
|..+|+|..|+.+|.++ +.|.|
T Consensus 292 ~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 292 HPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred CCCccceeEecCCCCEEEEEeecc
Confidence 89999999999999977 45655
No 98
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=2.1e-19 Score=190.07 Aligned_cols=263 Identities=19% Similarity=0.198 Sum_probs=193.6
Q ss_pred CeeeEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---EEEEEeccCccceEEeccccceeEecccccCCC
Q 000685 1 MLRLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQ---VIYELKAGGVDQRRLVGAKLEKLAEGELEHKGK 77 (1352)
Q Consensus 1 mL~l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~---~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~ 77 (1352)
|+..+.-.+|.+-|..+...-.|++|||++.|++|+|+..+.+. ++.++.
T Consensus 1 ~~~q~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~--------------------------- 53 (299)
T KOG1332|consen 1 TVMQTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELT--------------------------- 53 (299)
T ss_pred CcceehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEec---------------------------
Confidence 34445557899999999999999999999999999999987532 233333
Q ss_pred ccccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeec-C-CCCeEEEEEecCcEE-EEEeeCCcc
Q 000685 78 PTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPS-T-KGRHFLVICCVNKAI-FLDLVTMRG 154 (1352)
Q Consensus 78 ~l~~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafs-p-dg~~lLasgs~D~~I-~wDl~t~~~ 154 (1352)
+| .++|+.++|. | -|. +|++|+.|+.+ +|....++-
T Consensus 54 ---------------------------------------Gh-~GPVwqv~wahPk~G~-iLAScsYDgkVIiWke~~g~w 92 (299)
T KOG1332|consen 54 ---------------------------------------GH-SGPVWKVAWAHPKFGT-ILASCSYDGKVIIWKEENGRW 92 (299)
T ss_pred ---------------------------------------CC-CCCeeEEeecccccCc-EeeEeecCceEEEEecCCCch
Confidence 11 3344444443 3 454 99999988877 667777765
Q ss_pred ccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCC--eEEEEEecCCCCCeeEEEEeeeCCCC-----
Q 000685 155 RDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW--KLVRRYTGGHKGSISCLMTFMASSGE----- 227 (1352)
Q Consensus 155 ~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~--~~i~~l~~gH~~~V~slawf~~s~dg----- 227 (1352)
........|...|++++|-| +..|-.|++++.||.|.|.+.++. -...++...|.-.|++++|..-+..|
T Consensus 93 ~k~~e~~~h~~SVNsV~wap---heygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~ 169 (299)
T KOG1332|consen 93 TKAYEHAAHSASVNSVAWAP---HEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQ 169 (299)
T ss_pred hhhhhhhhhcccceeecccc---cccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccccc
Confidence 56656678999999999977 567889999999999999988753 33334445899999999986332233
Q ss_pred ------CEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCC-CCCEEEEEECCCcEEEEECCCCeE
Q 000685 228 ------ALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMG-GSPQLITIGADKTLAIWDTVSFKE 300 (1352)
Q Consensus 228 ------~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~-dg~~LaSgs~DgtV~IWDl~tg~~ 300 (1352)
..|+||+.|+.|+||+..+++. ....+|.+|.+.|..++|.|..+ ...+|+++|.||+|.||..+.-..
T Consensus 170 ~~~~~~krlvSgGcDn~VkiW~~~~~~w----~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e 245 (299)
T KOG1332|consen 170 GPAAKVKRLVSGGCDNLVKIWKFDSDSW----KLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE 245 (299)
T ss_pred CcccccceeeccCCccceeeeecCCcch----hhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC
Confidence 6799999999999999998743 33445899999999999999421 246899999999999998763211
Q ss_pred EEEecCCCcccccCCceeEEEeCCCCCEEEE-ecCCe--EEecc
Q 000685 301 LRRIKPVPKLACHSVASWCHPRAPNLDILTC-VKDSH--IWAIE 341 (1352)
Q Consensus 301 l~~~~~~~~l~~hs~~V~svafspdg~lLS~-s~Dg~--IWDi~ 341 (1352)
..... -+......++.+.||..|.+|+. +.|+. +|.-+
T Consensus 246 ~wk~t---ll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 246 PWKKT---LLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ccccc---ccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 11111 13334567899999999998854 45553 78644
No 99
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.82 E-value=1.1e-17 Score=197.53 Aligned_cols=350 Identities=15% Similarity=0.168 Sum_probs=227.9
Q ss_pred eeEEecCCCCCEEEEEEcCCCC---EEEEEeCCCcEEEEECCCCcE--EEEEeccCccceEEeccccceeEecccccCCC
Q 000685 3 RLKAFRPTNDKIVKIQLHPTHP---WLVTADASDHVSVWNWEHRQV--IYELKAGGVDQRRLVGAKLEKLAEGELEHKGK 77 (1352)
Q Consensus 3 ~l~~L~gHs~~V~~lafSPdg~---~LaTgs~DG~VrVWDl~tg~~--i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~ 77 (1352)
.+.++.||..+|+|+.|-|+.. ++++|+.|+.|++|.++.... +.+++. |...+.++.........
T Consensus 46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g-~~~~~~cv~a~~~~~~~-------- 116 (764)
T KOG1063|consen 46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQG-HCKECVCVVARSSVMTC-------- 116 (764)
T ss_pred eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecC-cceeEEEEEeeeeEEEe--------
Confidence 3678899999999999999887 899999999999999984433 444443 33333333211111111
Q ss_pred ccccccCCceEEEEEcCCeEEEEEcCCccccccccccc-cccCCCCeeeeeecC-CCCeEEEEEecCcEEEE-EeeCCcc
Q 000685 78 PTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTA-VSNVTSGFASPPPST-KGRHFLVICCVNKAIFL-DLVTMRG 154 (1352)
Q Consensus 78 ~l~~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~-~~~~~~~V~slafsp-dg~~lLasgs~D~~I~w-Dl~t~~~ 154 (1352)
.-.|+.+.+||.+..+... .... .......-.|+++.+ .+..+++.|+.+..+.+ .-.+.++
T Consensus 117 -------------~~ad~~v~vw~~~~~e~~~--~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f 181 (764)
T KOG1063|consen 117 -------------KAADGTVSVWDKQQDEVFL--LAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSF 181 (764)
T ss_pred -------------eccCceEEEeecCCCceee--ehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcce
Confidence 1158999999995554110 0011 111011234556666 44556667777777755 3335566
Q ss_pred ccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCe---------------------E---EE-----
Q 000685 155 RDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK---------------------L---VR----- 205 (1352)
Q Consensus 155 ~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~---------------------~---i~----- 205 (1352)
..+....+|.++|++++|.-. ..+.-+|+++|.|..||||.+.-+. . +.
T Consensus 182 ~~v~el~GH~DWIrsl~f~~~--~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 182 ARVAELEGHTDWIRSLAFARL--GGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred eEEEEeeccchhhhhhhhhcc--CCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 677778999999999999421 2234578999999999999874211 1 11
Q ss_pred -EEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCcccee-cccccccccccceEEEEeeccCCCCCEEEE
Q 000685 206 -RYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSREL-VPKLSLKAHDGGVVAVELSRVMGGSPQLIT 283 (1352)
Q Consensus 206 -~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~-~~~~~l~gH~~~V~slafsp~~~dg~~LaS 283 (1352)
.+..||++.|+++. .+|.+..|+|+|.|.++.+|......-+..- ...-.+.|...+-+...|+| +++.+++
T Consensus 260 eall~GHeDWV~sv~---W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~---n~~~ii~ 333 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVW---WHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP---NSNVIIA 333 (764)
T ss_pred hhhhcCcccceEEEE---EccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC---CCCEEEE
Confidence 11249999999996 4888889999999999999987654322110 11112344556789999999 7899999
Q ss_pred EECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEE-EEecCCe--EEeccCCcccccccCccccCCCCC
Q 000685 284 IGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVP 360 (1352)
Q Consensus 284 gs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lL-S~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~ 360 (1352)
-|..|-.++|.......... .....||...|..++|+|.|.+| +.|.|.+ |+---... .. |. +-.+|
T Consensus 334 ~g~~Gg~hlWkt~d~~~w~~---~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q-----~~-wH-EiaRP 403 (764)
T KOG1063|consen 334 HGRTGGFHLWKTKDKTFWTQ---EPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQ-----QE-WH-EIARP 403 (764)
T ss_pred ecccCcEEEEeccCccceee---ccccccccccceeeeecCCCCEEEEeccccceeeecccccc-----cc-ee-eeccc
Confidence 99999999999433222221 13368999999999999999954 8999984 54322110 00 11 11111
Q ss_pred CeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCC
Q 000685 361 PQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1352)
Q Consensus 361 ~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~ 401 (1352)
.-|+- .+.|+++-+ +...+++|.++.+ +|+|+..
T Consensus 404 ----QiHGy-Dl~c~~~vn-~~~~FVSgAdEKV-lRvF~aP 437 (764)
T KOG1063|consen 404 ----QIHGY-DLTCLSFVN-EDLQFVSGADEKV-LRVFEAP 437 (764)
T ss_pred ----ccccc-cceeeehcc-CCceeeeccccee-eeeecCc
Confidence 12443 688999988 4555666655555 6999854
No 100
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.82 E-value=3.9e-19 Score=202.24 Aligned_cols=255 Identities=16% Similarity=0.239 Sum_probs=197.1
Q ss_pred cccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccc--cc-------------ccc-ccCCCCeEEEEEeecccc
Q 000685 116 VSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGR--DI-------------PKQ-ELDNKSLVCMEFLSRSAV 178 (1352)
Q Consensus 116 ~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~--~i-------------~~~-~~h~~~V~~vaf~P~s~S 178 (1352)
.+.|...+.+|+++|+++ +..+++.++.| .|+..+++.. .+ ... +.|...+.|++. |
T Consensus 138 ~~~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av-----S 211 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV-----S 211 (479)
T ss_pred eccccCcceEEEeecccc-ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE-----c
Confidence 344577899999999998 88888888877 7887776532 01 111 367888999999 8
Q ss_pred CCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceeccccc
Q 000685 179 GDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLS 258 (1352)
Q Consensus 179 pdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~ 258 (1352)
+||+||++|+.|..|.|||.++.+.++.+. +|.+.|.+++ |-...+.+.++|.|++|++|++.....+.+
T Consensus 212 ~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~-ghr~~V~~L~---fr~gt~~lys~s~Drsvkvw~~~~~s~vet------ 281 (479)
T KOG0299|consen 212 SDGKYLATGGRDRHVQIWDCDTLEHVKVFK-GHRGAVSSLA---FRKGTSELYSASADRSVKVWSIDQLSYVET------ 281 (479)
T ss_pred CCCcEEEecCCCceEEEecCcccchhhccc-ccccceeeee---eecCccceeeeecCCceEEEehhHhHHHHH------
Confidence 899999999999999999999999999987 9999999998 677778899999999999999987665443
Q ss_pred ccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEEEEecCCe--
Q 000685 259 LKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSH-- 336 (1352)
Q Consensus 259 l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lLS~s~Dg~-- 336 (1352)
+.||.+.|.+|.... -++.+..|+.|+++++|++..-..+- +.+|...+-|++|-.+..+++||.||.
T Consensus 282 lyGHqd~v~~IdaL~---reR~vtVGgrDrT~rlwKi~eesqli-------frg~~~sidcv~~In~~HfvsGSdnG~Ia 351 (479)
T KOG0299|consen 282 LYGHQDGVLGIDALS---RERCVTVGGRDRTVRLWKIPEESQLI-------FRGGEGSIDCVAFINDEHFVSGSDNGSIA 351 (479)
T ss_pred HhCCccceeeechhc---ccceEEeccccceeEEEeccccceee-------eeCCCCCeeeEEEecccceeeccCCceEE
Confidence 799999999998875 45566666699999999996433222 478888999999999999999999997
Q ss_pred EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCC
Q 000685 337 IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1352)
Q Consensus 337 IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~~ 402 (1352)
||++.+.+..-.....+...... ... +....|++++..| +..++|+|+.+|.| |+|-+.+
T Consensus 352 LWs~~KKkplf~~~~AHgv~~~~--~~~--~~~~Witsla~i~-~sdL~asGS~~G~v-rLW~i~~ 411 (479)
T KOG0299|consen 352 LWSLLKKKPLFTSRLAHGVIPEL--DPV--NGNFWITSLAVIP-GSDLLASGSWSGCV-RLWKIED 411 (479)
T ss_pred EeeecccCceeEeeccccccCCc--ccc--ccccceeeeEecc-cCceEEecCCCCce-EEEEecC
Confidence 79987542211111111111100 001 1113899999999 89999999999997 9997653
No 101
>PTZ00420 coronin; Provisional
Probab=99.82 E-value=7e-18 Score=207.98 Aligned_cols=222 Identities=12% Similarity=0.069 Sum_probs=163.3
Q ss_pred CCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCcc------ccccccccCCCC
Q 000685 94 DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRG------RDIPKQELDNKS 166 (1352)
Q Consensus 94 Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~------~~i~~~~~h~~~ 166 (1352)
++.+++|+..+...+ ....+| ...|.+++|+|+...+|++|+.|+.+ +||+.++.. ..+.....|...
T Consensus 53 ~gvI~L~~~~r~~~v----~~L~gH-~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~ 127 (568)
T PTZ00420 53 IGAIRLENQMRKPPV----IKLKGH-TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK 127 (568)
T ss_pred eeEEEeeecCCCceE----EEEcCC-CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCc
Confidence 678888987665432 233444 88999999999744499999999999 678865421 112245678999
Q ss_pred eEEEEEeeccccCCCCE-EEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCC
Q 000685 167 LVCMEFLSRSAVGDVPL-VAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSAD 245 (1352)
Q Consensus 167 V~~vaf~P~s~Spdg~~-LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~ 245 (1352)
|.+++| +|++.. +++|+.|++|+|||+++++.+..+. |...|.+++ ++++|.+|++++.|++|++||++
T Consensus 128 V~sVaf-----~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~~~V~Sls---wspdG~lLat~s~D~~IrIwD~R 197 (568)
T PTZ00420 128 ISIIDW-----NPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MPKKLSSLK---WNIKGNLLSGTCVGKHMHIIDPR 197 (568)
T ss_pred EEEEEE-----CCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--cCCcEEEEE---ECCCCCEEEEEecCCEEEEEECC
Confidence 999999 556765 5789999999999999998777664 667899998 68999999999999999999999
Q ss_pred CCCccceecccccccccccceEEEE-----eeccCCCCCEEEEEECCC----cEEEEECCC-CeEEEEecCCCcccccCC
Q 000685 246 HGQDSRELVPKLSLKAHDGGVVAVE-----LSRVMGGSPQLITIGADK----TLAIWDTVS-FKELRRIKPVPKLACHSV 315 (1352)
Q Consensus 246 tg~~~~~~~~~~~l~gH~~~V~sla-----fsp~~~dg~~LaSgs~Dg----tV~IWDl~t-g~~l~~~~~~~~l~~hs~ 315 (1352)
+++.+.+ +.+|.+.+.+.. |++ ++.+|+++|.|+ +|+|||+++ ++++..+ .+..+..
T Consensus 198 sg~~i~t------l~gH~g~~~s~~v~~~~fs~---d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~----~ld~~~~ 264 (568)
T PTZ00420 198 KQEIASS------FHIHDGGKNTKNIWIDGLGG---DDNYILSTGFSKNNMREMKLWDLKNTTSALVTM----SIDNASA 264 (568)
T ss_pred CCcEEEE------EecccCCceeEEEEeeeEcC---CCCEEEEEEcCCCCccEEEEEECCCCCCceEEE----EecCCcc
Confidence 9876544 678887654433 345 678899888764 799999995 5555542 1233444
Q ss_pred ceeEEEeCCCCCEE-EEecCCe--EEeccCC
Q 000685 316 ASWCHPRAPNLDIL-TCVKDSH--IWAIEHP 343 (1352)
Q Consensus 316 ~V~svafspdg~lL-S~s~Dg~--IWDi~t~ 343 (1352)
.+......+++.++ +|+.|+. +|++..+
T Consensus 265 ~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 265 PLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred ceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 44334445557755 7778885 8998754
No 102
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=8.7e-16 Score=181.90 Aligned_cols=266 Identities=17% Similarity=0.202 Sum_probs=198.6
Q ss_pred cCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEEEeeCCccccccccccCCCCeEEEEE
Q 000685 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEF 172 (1352)
Q Consensus 93 ~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl~t~~~~~i~~~~~h~~~V~~vaf 172 (1352)
.+|.|-+|++..+-+.. ....++.+..|.+++|++.++ ++.++.++.+..||+.+++. ........+.|.+++.
T Consensus 45 t~g~IEiwN~~~~w~~~---~vi~g~~drsIE~L~W~e~~R-LFS~g~sg~i~EwDl~~lk~--~~~~d~~gg~IWsiai 118 (691)
T KOG2048|consen 45 TDGNIEIWNLSNNWFLE---PVIHGPEDRSIESLAWAEGGR-LFSSGLSGSITEWDLHTLKQ--KYNIDSNGGAIWSIAI 118 (691)
T ss_pred cCCcEEEEccCCCceee---EEEecCCCCceeeEEEccCCe-EEeecCCceEEEEecccCce--eEEecCCCcceeEEEe
Confidence 68999999999876653 455567688999999998775 76666666666999998864 3345667889999999
Q ss_pred eeccccCCCCEEEEEECCCcEEEEECCCCeEEEEE-ecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccc
Q 000685 173 LSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRY-TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSR 251 (1352)
Q Consensus 173 ~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l-~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~ 251 (1352)
+|.+..++.|++||.+..++...++..... ....++.|.++. +++++..+++|+.||.|++||..++..+.
T Consensus 119 -----~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLsls---w~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~ 190 (691)
T KOG2048|consen 119 -----NPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLS---WNPTGTKIAGGSIDGVIRIWDVKSGQTLH 190 (691)
T ss_pred -----CCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEE---ecCCccEEEecccCceEEEEEcCCCceEE
Confidence 567899999999998888888877665433 224568999998 68999999999999999999999887654
Q ss_pred eec-cccccc-ccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCC-E
Q 000685 252 ELV-PKLSLK-AHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-I 328 (1352)
Q Consensus 252 ~~~-~~~~l~-gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~-l 328 (1352)
... ....+. +...-|+++.|-. ...|++|..-|+|.+||...|..++. ...|...|.+++..+++. +
T Consensus 191 ~~~~~~d~l~k~~~~iVWSv~~Lr----d~tI~sgDS~G~V~FWd~~~gTLiqS------~~~h~adVl~Lav~~~~d~v 260 (691)
T KOG2048|consen 191 IITMQLDRLSKREPTIVWSVLFLR----DSTIASGDSAGTVTFWDSIFGTLIQS------HSCHDADVLALAVADNEDRV 260 (691)
T ss_pred EeeecccccccCCceEEEEEEEee----cCcEEEecCCceEEEEcccCcchhhh------hhhhhcceeEEEEcCCCCeE
Confidence 110 011111 1334588888875 46899999999999999999998887 578999999999999966 5
Q ss_pred EEEecCCeEEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEE
Q 000685 329 LTCVKDSHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVII 395 (1352)
Q Consensus 329 LS~s~Dg~IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~Il 395 (1352)
+++|.|+++..+....... -|.. ......|.. .|.+++..+. .+.+|+.|+.+.
T Consensus 261 fsaGvd~~ii~~~~~~~~~----~wv~-----~~~r~~h~h-dvrs~av~~~---~l~sgG~d~~l~ 314 (691)
T KOG2048|consen 261 FSAGVDPKIIQYSLTTNKS----EWVI-----NSRRDLHAH-DVRSMAVIEN---ALISGGRDFTLA 314 (691)
T ss_pred EEccCCCceEEEEecCCcc----ceee-----eccccCCcc-cceeeeeecc---eEEecceeeEEE
Confidence 5899999876554221100 0211 111223444 7889998873 799999999874
No 103
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.82 E-value=1.2e-19 Score=196.61 Aligned_cols=255 Identities=17% Similarity=0.283 Sum_probs=195.9
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCcccccc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~ 83 (1352)
+|+|-.|.+.|+++.|||....|++|+.|++|+++|+..-...+-++.
T Consensus 165 IRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~-------------------------------- 212 (430)
T KOG0640|consen 165 IRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKV-------------------------------- 212 (430)
T ss_pred EeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHH--------------------------------
Confidence 789999999999999999999999999999999999874222111110
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEE-EeeCCccccccc-cc
Q 000685 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPK-QE 161 (1352)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~w-Dl~t~~~~~i~~-~~ 161 (1352)
. . ....|+++.|+|.|. +|++|.+..++++ |+++.++-.-.. ..
T Consensus 213 -------------------------------~-q-d~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~QcfvsanPd~ 258 (430)
T KOG0640|consen 213 -------------------------------F-Q-DTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTYQCFVSANPDD 258 (430)
T ss_pred -------------------------------h-h-ccceeeeEeecCCCc-eEEEecCCCceeEEeccceeEeeecCccc
Confidence 0 0 034689999999998 9999999999977 999877632222 35
Q ss_pred cCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEE
Q 000685 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1352)
Q Consensus 162 ~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrV 241 (1352)
.|.+.|+++.| ++.+++.++||.||.|+|||--+++|+.++...|.+.-.|-+ .|..+++++++.+.|..|++
T Consensus 259 qht~ai~~V~Y-----s~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa--~Ftkn~kyiLsSG~DS~vkL 331 (430)
T KOG0640|consen 259 QHTGAITQVRY-----SSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSA--VFTKNGKYILSSGKDSTVKL 331 (430)
T ss_pred ccccceeEEEe-----cCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeE--EEccCCeEEeecCCcceeee
Confidence 67899999999 789999999999999999999999999999888987544443 38999999999999999999
Q ss_pred EeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEE-CCCcEEEEECCCCeEEEEecCCCcccccCCceeEE
Q 000685 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIG-ADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCH 320 (1352)
Q Consensus 242 WDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs-~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~sv 320 (1352)
|.+.++.++.++..--. .+...--+...|+. ...|++.-. ..+.+.-||.+++..+..+ -.+|.+.+.++
T Consensus 332 WEi~t~R~l~~YtGAg~-tgrq~~rtqAvFNh---tEdyVl~pDEas~slcsWdaRtadr~~l~-----slgHn~a~R~i 402 (430)
T KOG0640|consen 332 WEISTGRMLKEYTGAGT-TGRQKHRTQAVFNH---TEDYVLFPDEASNSLCSWDARTADRVALL-----SLGHNGAVRWI 402 (430)
T ss_pred eeecCCceEEEEecCCc-ccchhhhhhhhhcC---ccceEEccccccCceeeccccchhhhhhc-----ccCCCCCceEE
Confidence 99999988766421100 11111123345665 455655443 4578899999988755543 36899999999
Q ss_pred EeCCCCC-EEEEecCCe--EEec
Q 000685 321 PRAPNLD-ILTCVKDSH--IWAI 340 (1352)
Q Consensus 321 afspdg~-lLS~s~Dg~--IWDi 340 (1352)
.-||.+. +++||.|-+ +|--
T Consensus 403 ~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 403 VHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred EeCCCCCceeeecccceeeeeee
Confidence 9999988 668998875 7853
No 104
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.82 E-value=1.6e-18 Score=203.09 Aligned_cols=253 Identities=15% Similarity=0.100 Sum_probs=186.2
Q ss_pred cccccccCC--CCCceEEECCCccEEEEE-eeeEEEEEecccc-------ccccccccccccccceeeeeeeEEecCCcc
Q 000685 676 TFQPVGGLL--PQPEWTAWDQTVEYCAFA-YQHYIVISSLCPQ-------YRYLGDVAIPYATGAVWHRRQLFVVTPTTI 745 (1352)
Q Consensus 676 ~~~~~~~~~--~~~~~~~w~~~~~~~a~~-~~~~i~i~~~~~~-------~~~~~~~~~~~~~s~~w~~~~~f~~t~~~i 745 (1352)
.++-++.+. ..++|+..+.++.++.++ .+-.++++++..- |-.+.+| +|+++..|.+++..
T Consensus 327 ~g~~~~~inh~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmilnfcsymqw-vp~sdvivaqn~dn-------- 397 (1636)
T KOG3616|consen 327 GGQNEGFINHEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMILNFCSYMQW-VPGSDVIVAQNGDN-------- 397 (1636)
T ss_pred cCcccccccccccccceeccchhhhhhcccccceeEEEEcccchHHHHHHHhhhhee-ccCcceEEecCCCc--------
Confidence 333444443 468999999999999999 5667888877432 2226667 77677777766554
Q ss_pred eEEeecCCccchhhhhhHHHHHHHHHhhhhhhhhcccchhhhhhhcchhhhhhhcccCCCchhhhhhhcccccCCCCCcc
Q 000685 746 ECVFVDAGVAAIDVETMKMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAASVPPFL 825 (1352)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (1352)
.|+|+|. +-|+ |++.|.
T Consensus 398 l~iwyn~-------d~pe-----------------------------------------------qvt~~k--------- 414 (1636)
T KOG3616|consen 398 LCIWYNI-------DAPE-----------------------------------------------QVTMFK--------- 414 (1636)
T ss_pred eEEEecC-------Ccch-----------------------------------------------hheeeE---------
Confidence 7999993 2222 233333
Q ss_pred cCCCcccccCCCCCCcchhhccccceeeecCCceeeEEeccCCCCCCCCcceEEEEEeCCEEEEEeCCCcEEEEEcChhh
Q 000685 826 TMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHALSLSHPG 905 (1352)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~l~~~~ 905 (1352)
+++|++.-.+ .||.+++ ++-..-.-++|.||...
T Consensus 415 -----ikgdv~~l~r---------------~~~ktev--------------------------iv~e~takvayeld~~~ 448 (1636)
T KOG3616|consen 415 -----IKGDVEALER---------------DADKTEV--------------------------IVMEGTAKVAYELDEGL 448 (1636)
T ss_pred -----ecccchhhhc---------------CCCceeE--------------------------EEeecceeEEEEecCcc
Confidence 5666554333 4555555 22333446899999999
Q ss_pred hhhhHHHhcCCHHHHHHHHhhcChhhHHHHHHHHHhCCcchhhcccccccCccEEEeecccccHHHHHHHHhhccccccc
Q 000685 906 IRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGMGYATEALHLPGISKRLEFDLAMQSNDLKRALQCLITMSNSRDI 985 (1352)
Q Consensus 906 ~~f~~~~~~~d~~~a~~~~~~i~~~~~~~~a~fl~~~G~~e~Al~~~~ds~~~kf~la~~~g~l~~a~~~~~~~~~~~~~ 985 (1352)
|+|..++..|||+.|...++++. ..+|+
T Consensus 449 iefgaaid~~df~ra~afles~~----------------------~~~da------------------------------ 476 (1636)
T KOG3616|consen 449 IEFGAAIDDGDFDRATAFLESLE----------------------MGPDA------------------------------ 476 (1636)
T ss_pred eecccccccCchHHHHHHHHhhc----------------------cCccH------------------------------
Confidence 99999999999999988887743 33442
Q ss_pred CCCCCCCCccccccccccchhhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcccccccccchhhHHH
Q 000685 986 GQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALR 1065 (1352)
Q Consensus 986 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ll 1065 (1352)
+ .||++|++.||..||+-+|++||..+ |+|++|+.|||...++--
T Consensus 477 --~------------------------------amw~~laelale~~nl~iaercfaai---~dvak~r~lhd~~eiade 521 (1636)
T KOG3616|consen 477 --E------------------------------AMWIRLAELALEAGNLFIAERCFAAI---GDVAKARFLHDILEIADE 521 (1636)
T ss_pred --H------------------------------HHHHHHHHHHHHhccchHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3 89999999999999999999999999 999999999998887642
Q ss_pred Hh--ccCCh-hHHHHHHHHHHHcCCcHHHHHHHH-HcCCHHHHHHHHHHcCCcHHHHHHHHHcCCCchHHHHH
Q 000685 1066 LA--NHGEL-TRLSGLVTNLISLGLGREAAFSAA-ILGDNALMEKAWQDTGMLAEAVLHAHAHGRPSLKNLVE 1134 (1352)
Q Consensus 1066 ~~--~~g~~-~~l~~l~~~a~~~~~~~~~af~~~-~lgd~~~~~~~l~~~~~~~~A~~~A~t~~~~~~~~~~~ 1134 (1352)
.+ ..|+- .-.+..+..|+..+++ ..|...+ ..++.++++-|+++.++|.||+.+|+..|+|.++.+-.
T Consensus 522 as~~~ggdgt~fykvra~lail~kkf-k~ae~ifleqn~te~aigmy~~lhkwde~i~lae~~~~p~~eklk~ 593 (1636)
T KOG3616|consen 522 ASIEIGGDGTDFYKVRAMLAILEKKF-KEAEMIFLEQNATEEAIGMYQELHKWDEAIALAEAKGHPALEKLKR 593 (1636)
T ss_pred HhHhhCCCCchHHHHHHHHHHHHhhh-hHHHHHHHhcccHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHH
Confidence 22 34443 3344445556666667 6677766 89999999999999999999999999999998766543
No 105
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.82 E-value=1.6e-18 Score=185.44 Aligned_cols=263 Identities=14% Similarity=0.163 Sum_probs=194.2
Q ss_pred eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccc
Q 000685 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAM 82 (1352)
Q Consensus 3 ~l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l 82 (1352)
||-+|.||++.|+|++.+-+.++|+||+.|.+++|||+++|+++.+++.+-.-...-...++.+++...++..+
T Consensus 44 rlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg------ 117 (327)
T KOG0643|consen 44 RLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMG------ 117 (327)
T ss_pred eeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcC------
Confidence 68899999999999999999999999999999999999999999999865322222223555555444333222
Q ss_pred cCCceEEEEEcCCeEEEEEcCCccccc-ccc-ccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccc
Q 000685 83 RGGSVKQVNFYDDDVRFWQLWRNRAAA-AEA-PTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPK 159 (1352)
Q Consensus 83 ~~g~V~sVaF~Dg~IrlWDl~t~~~i~-~~~-~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~ 159 (1352)
..+.|.++|++....-. ... -.....+.+.++.+-|.|-++ +|++|.+|+.| +||..++.. .+..
T Consensus 118 ----------~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~-~ii~Ghe~G~is~~da~~g~~-~v~s 185 (327)
T KOG0643|consen 118 ----------YTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE-TIIAGHEDGSISIYDARTGKE-LVDS 185 (327)
T ss_pred ----------cceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC-EEEEecCCCcEEEEEcccCce-eeec
Confidence 35678888887543211 111 111222357889999999998 99999999988 779998743 3455
Q ss_pred cccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCc-
Q 000685 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL- 238 (1352)
Q Consensus 160 ~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGt- 238 (1352)
...|...|+.|.+ +++..++++||.|.+-++||..+.++++++. ...+|++.+ ++|..+.++.|+.-.-
T Consensus 186 ~~~h~~~Ind~q~-----s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~--te~PvN~aa---isP~~d~VilgGGqeA~ 255 (327)
T KOG0643|consen 186 DEEHSSKINDLQF-----SRDRTYFITGSKDTTAKLVDVRTLEVLKTYT--TERPVNTAA---ISPLLDHVILGGGQEAM 255 (327)
T ss_pred hhhhccccccccc-----cCCcceEEecccCccceeeeccceeeEEEee--eccccccee---cccccceEEecCCceee
Confidence 6788999999999 8899999999999999999999999999985 678999997 6776666666553322
Q ss_pred -EEEEeCCCCCcccee------cccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECC
Q 000685 239 -LILWSADHGQDSREL------VPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV 296 (1352)
Q Consensus 239 -VrVWDl~tg~~~~~~------~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~ 296 (1352)
|.-=+.+.|+....| ...-.+++|-++|++++||| +|...+||+.||.||+.-..
T Consensus 256 dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP---dGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 256 DVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP---DGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred eeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC---CCcccccCCCCceEEEEEec
Confidence 222222233221111 01223689999999999999 89999999999999997544
No 106
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.81 E-value=1.1e-19 Score=192.34 Aligned_cols=248 Identities=17% Similarity=0.226 Sum_probs=203.4
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCcccccc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~ 83 (1352)
+-+|+||.+.|++..++.+-.+-++++.|=+-+|||..+|..+++|...|.-.....+.|.++|++|+
T Consensus 52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg------------ 119 (334)
T KOG0278|consen 52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGG------------ 119 (334)
T ss_pred EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccc------------
Confidence 57899999999999999999999999999999999999999999998666444344447777777775
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCcccccccccc
Q 000685 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1352)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~ 162 (1352)
.+..+|++|++..+-- +.....|...|+.+-|....+ .+++..+|+.| .||..++.... . -.
T Consensus 120 ---------~ekllrvfdln~p~Ap----p~E~~ghtg~Ir~v~wc~eD~-~iLSSadd~tVRLWD~rTgt~v~--s-L~ 182 (334)
T KOG0278|consen 120 ---------QEKLLRVFDLNRPKAP----PKEISGHTGGIRTVLWCHEDK-CILSSADDKTVRLWDHRTGTEVQ--S-LE 182 (334)
T ss_pred ---------hHHHhhhhhccCCCCC----chhhcCCCCcceeEEEeccCc-eEEeeccCCceEEEEeccCcEEE--E-Ee
Confidence 5778999999887553 444455588999999998776 66777899988 56999886422 2 23
Q ss_pred CCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEE
Q 000685 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1352)
Q Consensus 163 h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVW 242 (1352)
-...|+++.+ +++|++|.++ ..+.|.+||..+...++.+. -.-.|.+.. .+|+...++.|+.|..++.|
T Consensus 183 ~~s~VtSlEv-----s~dG~ilTia-~gssV~Fwdaksf~~lKs~k--~P~nV~SAS---L~P~k~~fVaGged~~~~kf 251 (334)
T KOG0278|consen 183 FNSPVTSLEV-----SQDGRILTIA-YGSSVKFWDAKSFGLLKSYK--MPCNVESAS---LHPKKEFFVAGGEDFKVYKF 251 (334)
T ss_pred cCCCCcceee-----ccCCCEEEEe-cCceeEEeccccccceeecc--Ccccccccc---ccCCCceEEecCcceEEEEE
Confidence 3578999999 6788866555 67789999999998888774 455677775 78889999999999999999
Q ss_pred eCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCe
Q 000685 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK 299 (1352)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~ 299 (1352)
|..++..+..+ .++|.++|.|+.|+| +|...++||.||+|++|.+..++
T Consensus 252 Dy~TgeEi~~~-----nkgh~gpVhcVrFSP---dGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 252 DYNTGEEIGSY-----NKGHFGPVHCVRFSP---DGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred eccCCceeeec-----ccCCCCceEEEEECC---CCceeeccCCCceEEEEEecCCC
Confidence 99999876542 389999999999999 89999999999999999987655
No 107
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=1.9e-18 Score=188.79 Aligned_cols=269 Identities=17% Similarity=0.198 Sum_probs=200.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec-cccceeEecccccCCCccccccCCceE
Q 000685 10 TNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG-AKLEKLAEGELEHKGKPTEAMRGGSVK 88 (1352)
Q Consensus 10 Hs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs-~dg~~Lasgs~d~~g~~l~~l~~g~V~ 88 (1352)
-.+.|.+|.|+|.+..|+.++.||.+++||.........++.. ..+...+ .+...+++|+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~--~plL~c~F~d~~~~~~G~----------------- 72 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHG--APLLDCAFADESTIVTGG----------------- 72 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecC--CceeeeeccCCceEEEec-----------------
Confidence 3688999999999999999999999999999887666666522 1222222 2223333332
Q ss_pred EEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccccccCCCCe
Q 000685 89 QVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSL 167 (1352)
Q Consensus 89 sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~h~~~V 167 (1352)
.||.|+.+|+.++.. ...+.|...|+|+.+++... .+++|+.|+.| +||...... +. .......|
T Consensus 73 ----~dg~vr~~Dln~~~~------~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~--~~-~~d~~kkV 138 (323)
T KOG1036|consen 73 ----LDGQVRRYDLNTGNE------DQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVV--VG-TFDQGKKV 138 (323)
T ss_pred ----cCceEEEEEecCCcc------eeeccCCCceEEEEeeccCC-eEEEcccCccEEEEecccccc--cc-ccccCceE
Confidence 689999999999855 35666689999999998665 89999999999 678875221 11 12334589
Q ss_pred EEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEE-ecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCC
Q 000685 168 VCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRY-TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH 246 (1352)
Q Consensus 168 ~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l-~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~t 246 (1352)
.|+.. .++.|++|+.|..|.+||+++....... ...-+-.+.|++ .-|++.-++.+|-||.|.+=.++.
T Consensus 139 y~~~v-------~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~---~~pn~eGy~~sSieGRVavE~~d~ 208 (323)
T KOG1036|consen 139 YCMDV-------SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVA---LVPNGEGYVVSSIEGRVAVEYFDD 208 (323)
T ss_pred EEEec-------cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEE---EecCCCceEEEeecceEEEEccCC
Confidence 99988 6889999999999999999986543322 234556788887 344788889999999999877766
Q ss_pred CCccceecccccccccc---------cceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCce
Q 000685 247 GQDSRELVPKLSLKAHD---------GGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVAS 317 (1352)
Q Consensus 247 g~~~~~~~~~~~l~gH~---------~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V 317 (1352)
...... .++.++.|. .+|++++||| -...|+|||.||.|.+||+.+.+.+.. +......|
T Consensus 209 s~~~~s--kkyaFkCHr~~~~~~~~~yPVNai~Fhp---~~~tfaTgGsDG~V~~Wd~~~rKrl~q------~~~~~~SI 277 (323)
T KOG1036|consen 209 SEEAQS--KKYAFKCHRLSEKDTEIIYPVNAIAFHP---IHGTFATGGSDGIVNIWDLFNRKRLKQ------LAKYETSI 277 (323)
T ss_pred chHHhh--hceeEEeeecccCCceEEEEeceeEecc---ccceEEecCCCceEEEccCcchhhhhh------ccCCCCce
Confidence 533322 345566665 3699999999 467899999999999999998887666 34445678
Q ss_pred eEEEeCCCCCEEEEe
Q 000685 318 WCHPRAPNLDILTCV 332 (1352)
Q Consensus 318 ~svafspdg~lLS~s 332 (1352)
.+++|+.+|..|+.+
T Consensus 278 ~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 278 SSLSFSMDGSLLAIA 292 (323)
T ss_pred EEEEeccCCCeEEEE
Confidence 899999999988654
No 108
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1e-18 Score=207.74 Aligned_cols=242 Identities=14% Similarity=0.188 Sum_probs=203.7
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCCceEEE
Q 000685 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQV 90 (1352)
Q Consensus 11 s~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~sV 90 (1352)
.+.|+++.|+++|.+|++|..+|.|.|||..+.+.+.++..+|...+-+++.....+.+|+
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGs------------------- 277 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGS------------------- 277 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEec-------------------
Confidence 7899999999999999999999999999999999999998778888888887777777775
Q ss_pred EEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccccccCCCCeEE
Q 000685 91 NFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVC 169 (1352)
Q Consensus 91 aF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~h~~~V~~ 169 (1352)
.|+.|..+|++..+... . ...+|...|..++|++|+. .+++|+.|+.+ +||.... ........|...|..
T Consensus 278 --r~~~I~~~dvR~~~~~~---~-~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~--~p~~~~~~H~aAVKA 348 (484)
T KOG0305|consen 278 --RDGKILNHDVRISQHVV---S-TLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSP--EPKFTFTEHTAAVKA 348 (484)
T ss_pred --CCCcEEEEEEecchhhh---h-hhhcccceeeeeEECCCCC-eeccCCCccceEeccCCCc--cccEEEeccceeeeE
Confidence 68999999999887653 2 2455589999999999997 99999999888 6687443 335567889999999
Q ss_pred EEEeeccccCCCCEEEEEE--CCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEE--eCCCcEEEEeCC
Q 000685 170 MEFLSRSAVGDVPLVAFGS--SDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSG--GSDGLLILWSAD 245 (1352)
Q Consensus 170 vaf~P~s~Spdg~~LasGs--~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSg--S~DGtVrVWDl~ 245 (1352)
++|+|. ...+||+|+ .|+.|++||..++..+..+. ....|.++.| ++..+.|+++ -.++.|.||+..
T Consensus 349 ~awcP~----q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd--tgsQVcsL~W---sk~~kEi~sthG~s~n~i~lw~~p 419 (484)
T KOG0305|consen 349 LAWCPW----QSGLLATGGGSADRCIKFWNTNTGARIDSVD--TGSQVCSLIW---SKKYKELLSTHGYSENQITLWKYP 419 (484)
T ss_pred eeeCCC----ccCceEEcCCCcccEEEEEEcCCCcEecccc--cCCceeeEEE---cCCCCEEEEecCCCCCcEEEEecc
Confidence 999773 356888875 79999999999999998874 6789999985 6666666654 457889999998
Q ss_pred CCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCC
Q 000685 246 HGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSF 298 (1352)
Q Consensus 246 tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg 298 (1352)
+-+.+. .+.+|...|..++++| |+..+++|+.|.++++|++-..
T Consensus 420 s~~~~~------~l~gH~~RVl~la~SP---dg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 420 SMKLVA------ELLGHTSRVLYLALSP---DGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ccceee------eecCCcceeEEEEECC---CCCEEEEecccCcEEeccccCC
Confidence 855444 4799999999999999 8999999999999999998764
No 109
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.81 E-value=2e-18 Score=213.86 Aligned_cols=254 Identities=19% Similarity=0.221 Sum_probs=194.5
Q ss_pred ccccccCCCCeeeeeecCCCCeEEEEEe--cCc-EEEEEeeCC----------ccccccccccCCCCeEEEEEeeccccC
Q 000685 113 PTAVSNVTSGFASPPPSTKGRHFLVICC--VNK-AIFLDLVTM----------RGRDIPKQELDNKSLVCMEFLSRSAVG 179 (1352)
Q Consensus 113 ~~~~~~~~~~V~slafspdg~~lLasgs--~D~-~I~wDl~t~----------~~~~i~~~~~h~~~V~~vaf~P~s~Sp 179 (1352)
+....|+...|.++..+|++. .+++|+ .|+ .++|+...- -.+.+.....|.+.|+|+.| ++
T Consensus 6 p~wv~H~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~-----S~ 79 (942)
T KOG0973|consen 6 PTWVNHNEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRF-----SP 79 (942)
T ss_pred ccccccCCeeEEEEEecCCce-eEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEE-----CC
Confidence 455667777899999999998 788887 444 446643211 01234455778999999999 88
Q ss_pred CCCEEEEEECCCcEEEEECCC------------------CeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEE
Q 000685 180 DVPLVAFGSSDGVIRVLSMIS------------------WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1352)
Q Consensus 180 dg~~LasGs~DGtIrIWDl~t------------------~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrV 241 (1352)
||.+|++||+|+.|.||+... ++++..+. +|.+.|..++ ++|++.+|+|+|.|++|.+
T Consensus 80 dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~-~H~~DV~Dv~---Wsp~~~~lvS~s~DnsVii 155 (942)
T KOG0973|consen 80 DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR-GHDSDVLDVN---WSPDDSLLVSVSLDNSVII 155 (942)
T ss_pred CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEe-cCCCccceec---cCCCccEEEEecccceEEE
Confidence 999999999999999998761 35677777 9999999998 4889999999999999999
Q ss_pred EeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEE
Q 000685 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHP 321 (1352)
Q Consensus 242 WDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~sva 321 (1352)
||..+.+.+.. +.+|.+.|..+.|.| -|+||++-++|++|+||++.++...+++.....-..-+.-...+.
T Consensus 156 wn~~tF~~~~v------l~~H~s~VKGvs~DP---~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlS 226 (942)
T KOG0973|consen 156 WNAKTFELLKV------LRGHQSLVKGVSWDP---IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLS 226 (942)
T ss_pred Eccccceeeee------eecccccccceEECC---ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecc
Confidence 99998866554 799999999999999 699999999999999999988887777643322223334567899
Q ss_pred eCCCCCEEEE--ecCC-e----EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecC------C------C
Q 000685 322 RAPNLDILTC--VKDS-H----IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSL------Q------P 382 (1352)
Q Consensus 322 fspdg~lLS~--s~Dg-~----IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~------~------~ 382 (1352)
|||||++|+. +..+ . |.+-. .......|-+|.. ++.|+.|+|. + +
T Consensus 227 WSPDG~~las~nA~n~~~~~~~IieR~---------------tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~ 290 (942)
T KOG0973|consen 227 WSPDGHHLASPNAVNGGKSTIAIIERG---------------TWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQP 290 (942)
T ss_pred cCCCcCeecchhhccCCcceeEEEecC---------------CceeeeeeecCCC-ceEEEEeChHHhccccccCCccCC
Confidence 9999998853 3333 1 22211 1122346778888 9999999983 1 1
Q ss_pred ----cEEEEEECCCeEEEEecCCC
Q 000685 383 ----HLVATGTNVGVIISEFDPRS 402 (1352)
Q Consensus 383 ----~lLatGs~DG~IlriWd~~~ 402 (1352)
..+|+|+.|+.+ .+|....
T Consensus 291 ~~~y~i~AvgSqDrSl-SVW~T~~ 313 (942)
T KOG0973|consen 291 NCYYCIAAVGSQDRSL-SVWNTAL 313 (942)
T ss_pred CcceEEEEEecCCccE-EEEecCC
Confidence 168999999997 7997643
No 110
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.81 E-value=2.7e-19 Score=200.90 Aligned_cols=260 Identities=12% Similarity=0.143 Sum_probs=198.2
Q ss_pred cCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEEEeeCCccccccccccCCCCeEEEEE
Q 000685 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEF 172 (1352)
Q Consensus 93 ~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl~t~~~~~i~~~~~h~~~V~~vaf 172 (1352)
.|..|++|++...++- ...++.+. .+.|.++.|.++++++|+.+.+...-.|+....+. ..++.+|.+.|+++.|
T Consensus 195 ~Dr~Ik~W~v~~~k~~--~~~tLaGs-~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~--~~TLsGHtdkVt~ak~ 269 (459)
T KOG0288|consen 195 SDRIIKLWNVLGEKSE--LISTLAGS-LGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRL--RHTLSGHTDKVTAAKF 269 (459)
T ss_pred hhhhhhhhhcccchhh--hhhhhhcc-CCCcceeeecCCCceEEeecCCCceeeeeccchhh--hhhhcccccceeeehh
Confidence 5778999999887632 23444454 67799999999998565555555555888887654 4467889999999999
Q ss_pred eeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccce
Q 000685 173 LSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRE 252 (1352)
Q Consensus 173 ~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~ 252 (1352)
......+++|+.|.+|++||+....|.+++. -...+..|. . .+..++||..|++||+||+++..+...
T Consensus 270 -----~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l--~~S~cnDI~---~--~~~~~~SgH~DkkvRfwD~Rs~~~~~s 337 (459)
T KOG0288|consen 270 -----KLSHSRVVSGSADRTIKLWDLQKAYCSKTVL--PGSQCNDIV---C--SISDVISGHFDKKVRFWDIRSADKTRS 337 (459)
T ss_pred -----hccccceeeccccchhhhhhhhhhheecccc--ccccccceE---e--cceeeeecccccceEEEeccCCceeeE
Confidence 3344449999999999999999999988875 334555554 1 266889999999999999999886654
Q ss_pred ecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEE-EE
Q 000685 253 LVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TC 331 (1352)
Q Consensus 253 ~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lL-S~ 331 (1352)
...|. .|+++..++ ++..|.+++.|.++.+.|+++.+..+.+....-..+|. .+.+.|||++.++ +|
T Consensus 338 ------v~~gg-~vtSl~ls~---~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asD--wtrvvfSpd~~YvaAG 405 (459)
T KOG0288|consen 338 ------VPLGG-RVTSLDLSM---DGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASD--WTRVVFSPDGSYVAAG 405 (459)
T ss_pred ------eecCc-ceeeEeecc---CCeEEeeecCCCceeeeecccccEEEEeeccccccccc--cceeEECCCCceeeec
Confidence 34443 799999999 88999999999999999999988877775544334443 6689999999987 68
Q ss_pred ecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCc-ccEEEEEEecCCCcEEEEEECCCeEEEEe
Q 000685 332 VKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKK-LRVYCMVAHSLQPHLVATGTNVGVIISEF 398 (1352)
Q Consensus 332 s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~-~~V~~la~sp~~~~lLatGs~DG~IlriW 398 (1352)
|.||. ||++.+++. ...+...+. ..|.++.|+|. +..+++++.++.+ .+|
T Consensus 406 S~dgsv~iW~v~tgKl---------------E~~l~~s~s~~aI~s~~W~~s-G~~Llsadk~~~v-~lW 458 (459)
T KOG0288|consen 406 SADGSVYIWSVFTGKL---------------EKVLSLSTSNAAITSLSWNPS-GSGLLSADKQKAV-TLW 458 (459)
T ss_pred cCCCcEEEEEccCceE---------------EEEeccCCCCcceEEEEEcCC-CchhhcccCCcce-Eec
Confidence 89996 899987642 222333332 16999999994 6667888888886 688
No 111
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.81 E-value=1.3e-18 Score=198.12 Aligned_cols=277 Identities=17% Similarity=0.223 Sum_probs=208.4
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCCce
Q 000685 8 RPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSV 87 (1352)
Q Consensus 8 ~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V 87 (1352)
-.|..-|.++.+|...+++.|| ..|.|+|||+... +.. .+|
T Consensus 416 L~HGEvVcAvtIS~~trhVyTg-GkgcVKVWdis~p--------g~k------------------------------~Pv 456 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTG-GKGCVKVWDISQP--------GNK------------------------------SPV 456 (705)
T ss_pred hccCcEEEEEEecCCcceeEec-CCCeEEEeeccCC--------CCC------------------------------Ccc
Confidence 4688889999999988999998 4688999997631 000 000
Q ss_pred EEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccccccCCC-
Q 000685 88 KQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNK- 165 (1352)
Q Consensus 88 ~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~h~~- 165 (1352)
.. .| | -...+.|+++...|||+ .|++|+.-..+ +||+.....+.. .+....
T Consensus 457 sq----------Ld-----c---------l~rdnyiRSckL~pdgr-tLivGGeastlsiWDLAapTprik--aeltssa 509 (705)
T KOG0639|consen 457 SQ----------LD-----C---------LNRDNYIRSCKLLPDGR-TLIVGGEASTLSIWDLAAPTPRIK--AELTSSA 509 (705)
T ss_pred cc----------cc-----c---------cCcccceeeeEecCCCc-eEEeccccceeeeeeccCCCcchh--hhcCCcc
Confidence 00 00 0 01156788999999998 55566655555 899877643221 122222
Q ss_pred -CeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeC
Q 000685 166 -SLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSA 244 (1352)
Q Consensus 166 -~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl 244 (1352)
....++. +||.++.++|+.||.|.|||+.+...++.|. ||.+.+.||. .+++|..|-||+.|++||.||+
T Consensus 510 paCyALa~-----spDakvcFsccsdGnI~vwDLhnq~~Vrqfq-GhtDGascId---is~dGtklWTGGlDntvRcWDl 580 (705)
T KOG0639|consen 510 PACYALAI-----SPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCID---ISKDGTKLWTGGLDNTVRCWDL 580 (705)
T ss_pred hhhhhhhc-----CCccceeeeeccCCcEEEEEcccceeeeccc-CCCCCceeEE---ecCCCceeecCCCccceeehhh
Confidence 3344666 7899999999999999999999999999998 9999999997 8999999999999999999999
Q ss_pred CCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCC
Q 000685 245 DHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAP 324 (1352)
Q Consensus 245 ~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafsp 324 (1352)
+.+..+.. ......|.++.++| .+.+++.|-.++.+.|-.....+..+ +.-|...|.++.|.+
T Consensus 581 regrqlqq-------hdF~SQIfSLg~cP---~~dWlavGMens~vevlh~skp~kyq-------lhlheScVLSlKFa~ 643 (705)
T KOG0639|consen 581 REGRQLQQ-------HDFSSQIFSLGYCP---TGDWLAVGMENSNVEVLHTSKPEKYQ-------LHLHESCVLSLKFAY 643 (705)
T ss_pred hhhhhhhh-------hhhhhhheecccCC---CccceeeecccCcEEEEecCCcccee-------ecccccEEEEEEecc
Confidence 99876543 22345699999999 78999999999999988866444322 567889999999999
Q ss_pred CCCEE-EEecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeE
Q 000685 325 NLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVI 394 (1352)
Q Consensus 325 dg~lL-S~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~I 394 (1352)
.|+++ +.|.|.. .|..--+. ..|.......|.|..++. +..+|+||+.|..-
T Consensus 644 cGkwfvStGkDnlLnawrtPyGa-----------------siFqskE~SsVlsCDIS~-ddkyIVTGSGdkkA 698 (705)
T KOG0639|consen 644 CGKWFVSTGKDNLLNAWRTPYGA-----------------SIFQSKESSSVLSCDISF-DDKYIVTGSGDKKA 698 (705)
T ss_pred cCceeeecCchhhhhhccCcccc-----------------ceeeccccCcceeeeecc-CceEEEecCCCcce
Confidence 99955 7888885 68766442 233333344799999998 67789999999653
No 112
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.81 E-value=1.1e-18 Score=199.14 Aligned_cols=263 Identities=14% Similarity=0.221 Sum_probs=192.4
Q ss_pred eeEEecCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEE----------EEeccCccceEEec---cccceeE
Q 000685 3 RLKAFRPTNDKIVKIQLHPTHP-WLVTADASDHVSVWNWEHRQVIY----------ELKAGGVDQRRLVG---AKLEKLA 68 (1352)
Q Consensus 3 ~l~~L~gHs~~V~~lafSPdg~-~LaTgs~DG~VrVWDl~tg~~i~----------t~~~~~~~~i~~vs---~dg~~La 68 (1352)
++..---|.+.|+.+.+-|..+ .++|.+..+.|.|||+.+-.-.. ++. +|...-+.++ ...-+|+
T Consensus 116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~-gH~~eg~glsWn~~~~g~Ll 194 (422)
T KOG0264|consen 116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLK-GHEKEGYGLSWNRQQEGTLL 194 (422)
T ss_pred EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEE-eecccccccccccccceeEe
Confidence 3445567899999999999877 67778889999999987532221 222 2222222222 1111222
Q ss_pred ecccccCCCccccccCCceEEEEEcCCeEEEEEcCCcccc--ccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-
Q 000685 69 EGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAA--AAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI- 145 (1352)
Q Consensus 69 sgs~d~~g~~l~~l~~g~V~sVaF~Dg~IrlWDl~t~~~i--~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I- 145 (1352)
+++ .|++|++||+...... ..........|...|..++|++....+++++++|+.+
T Consensus 195 s~~---------------------~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~ 253 (422)
T KOG0264|consen 195 SGS---------------------DDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLM 253 (422)
T ss_pred ecc---------------------CCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEE
Confidence 222 5899999999876442 1122333444589999999999888899999999988
Q ss_pred EEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCCeeEEEEeeeC
Q 000685 146 FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-KLVRRYTGGHKGSISCLMTFMAS 224 (1352)
Q Consensus 146 ~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~-~~i~~l~~gH~~~V~slawf~~s 224 (1352)
+||.++...+.......|...|+|++|.|. ++..||+||.|++|.+||+++. +++.++. +|...|.++.| .+
T Consensus 254 iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~----~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e-~H~dev~~V~W--SP 326 (422)
T KOG0264|consen 254 IWDTRSNTSKPSHSVKAHSAEVNCVAFNPF----NEFILATGSADKTVALWDLRNLNKPLHTFE-GHEDEVFQVEW--SP 326 (422)
T ss_pred EEEcCCCCCCCcccccccCCceeEEEeCCC----CCceEEeccCCCcEEEeechhcccCceecc-CCCcceEEEEe--CC
Confidence 669986433444556889999999999653 5788999999999999999975 4566766 99999999996 34
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCccc--------eecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECC
Q 000685 225 SGEALLVSGGSDGLLILWSADHGQDSR--------ELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV 296 (1352)
Q Consensus 225 ~dg~~LaSgS~DGtVrVWDl~tg~~~~--------~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~ 296 (1352)
.....|+|++.|+.+.|||+..-...+ -....|.-.||...|..+.|+|. ..-.|+|.+.|+.+.||.+.
T Consensus 327 h~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~--ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 327 HNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPN--EPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCC--CCeEEEEecCCceEEEeecc
Confidence 567899999999999999997532211 01123556899999999999993 56678899999999999986
No 113
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=6.7e-19 Score=204.52 Aligned_cols=308 Identities=16% Similarity=0.255 Sum_probs=215.8
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec----cccceeEecccccC-----
Q 000685 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG----AKLEKLAEGELEHK----- 75 (1352)
Q Consensus 5 ~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs----~dg~~Lasgs~d~~----- 75 (1352)
..|+||++.|.|+..+|.|.||++|+.||+||||.+.||.|++++.... .|.++. ++.-.|+.+-....
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~--~I~~vaw~P~~~~~vLAvA~~~~~~ivnp 471 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS--EIRSVAWNPLSDLCVLAVAVGECVLIVNP 471 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc--eeEEEEecCCCCceeEEEEecCceEEeCc
Confidence 4689999999999999999999999999999999999999999988543 455554 33334444321110
Q ss_pred --C------CccccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecC---cE
Q 000685 76 --G------KPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVN---KA 144 (1352)
Q Consensus 76 --g------~~l~~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D---~~ 144 (1352)
| ..-..+...+ .-.+-+..+..|.-.............+.| ...|+.+.|+.+|+ +|++.+-+ ..
T Consensus 472 ~~G~~~e~~~t~ell~~~~--~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~-~k~i~~vtWHrkGD-YlatV~~~~~~~~ 547 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAP--NESEPDAAVVTWSRASLDELEKGVCIVIKH-PKSIRQVTWHRKGD-YLATVMPDSGNKS 547 (733)
T ss_pred cccchhhhcchhhhhhcCC--CccCCcccceeechhhhhhhccceEEEEec-CCccceeeeecCCc-eEEEeccCCCcce
Confidence 0 0001111110 112246677788765433332222334444 78899999999998 66665432 23
Q ss_pred EEE-EeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeee
Q 000685 145 IFL-DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMA 223 (1352)
Q Consensus 145 I~w-Dl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~ 223 (1352)
+++ ++...+.. .-+....+.|.++.||| ...++++++. ..|+|||+.....++++. .....|.+++ .
T Consensus 548 VliHQLSK~~sQ--~PF~kskG~vq~v~FHP-----s~p~lfVaTq-~~vRiYdL~kqelvKkL~-tg~kwiS~ms---i 615 (733)
T KOG0650|consen 548 VLIHQLSKRKSQ--SPFRKSKGLVQRVKFHP-----SKPYLFVATQ-RSVRIYDLSKQELVKKLL-TGSKWISSMS---I 615 (733)
T ss_pred EEEEeccccccc--CchhhcCCceeEEEecC-----CCceEEEEec-cceEEEehhHHHHHHHHh-cCCeeeeeee---e
Confidence 333 66544322 22445577899999965 6677877765 569999999887777776 5556777776 8
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEE--
Q 000685 224 SSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKEL-- 301 (1352)
Q Consensus 224 s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l-- 301 (1352)
++.|..|+.|+.|+.+..+|+.-+. .+..++.-|...|.+|+||+ .-.++++|++||++.||.-.-..-+
T Consensus 616 hp~GDnli~gs~d~k~~WfDldlss-----kPyk~lr~H~~avr~Va~H~---ryPLfas~sdDgtv~Vfhg~VY~Dl~q 687 (733)
T KOG0650|consen 616 HPNGDNLILGSYDKKMCWFDLDLSS-----KPYKTLRLHEKAVRSVAFHK---RYPLFASGSDDGTVIVFHGMVYNDLLQ 687 (733)
T ss_pred cCCCCeEEEecCCCeeEEEEcccCc-----chhHHhhhhhhhhhhhhhcc---ccceeeeecCCCcEEEEeeeeehhhhc
Confidence 9999999999999999999998654 24456888999999999999 7889999999999999853321110
Q ss_pred -EEecCCCcccccCCc----eeEEEeCCCCCEE-EEecCCe--EE
Q 000685 302 -RRIKPVPKLACHSVA----SWCHPRAPNLDIL-TCVKDSH--IW 338 (1352)
Q Consensus 302 -~~~~~~~~l~~hs~~----V~svafspdg~lL-S~s~Dg~--IW 338 (1352)
-.+-++..+.+|... |..+.|||....| ++|.||+ +|
T Consensus 688 npliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 688 NPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 011234457888765 8888999998855 8888986 55
No 114
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=2.2e-18 Score=188.16 Aligned_cols=243 Identities=14% Similarity=0.209 Sum_probs=189.6
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec--ccc--ceeEecccccCCCcc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKL--EKLAEGELEHKGKPT 79 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs--~dg--~~Lasgs~d~~g~~l 79 (1352)
+-.|..|.+.|++++.+ ++|+|+|+.|-+|+|||+.+...+..+. +|.+.+.++. ++. ..|.+|+
T Consensus 36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll-~HagsitaL~F~~~~S~shLlS~s-------- 104 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL-SHAGSITALKFYPPLSKSHLLSGS-------- 104 (362)
T ss_pred cccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee-ccccceEEEEecCCcchhheeeec--------
Confidence 56789999999999997 8999999999999999999988888776 4566666554 222 2566654
Q ss_pred ccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCcccccc
Q 000685 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIP 158 (1352)
Q Consensus 80 ~~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~ 158 (1352)
.||.|.+|+.....++ .....| ...|+.++.+|.++ +..+.+.|+.+ .||+..++.-.+.
T Consensus 105 -------------dDG~i~iw~~~~W~~~----~slK~H-~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~ 165 (362)
T KOG0294|consen 105 -------------DDGHIIIWRVGSWELL----KSLKAH-KGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVL 165 (362)
T ss_pred -------------CCCcEEEEEcCCeEEe----eeeccc-ccccceeEecCCCc-eEEEEcCCceeeeehhhcCccceee
Confidence 6899999999998776 455555 66799999999998 77777778877 6799888754432
Q ss_pred ccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCc
Q 000685 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL 238 (1352)
Q Consensus 159 ~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGt 238 (1352)
.+ ....+.+.| +|.|.+++.+..++ |-||.+.+-.....+. ....+.|+.|. ++..|++|..|+.
T Consensus 166 ~L---~~~at~v~w-----~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~--~~~r~l~~~~l----~~~~L~vG~d~~~ 230 (362)
T KOG0294|consen 166 NL---KNKATLVSW-----SPQGDHFVVSGRNK-IDIYQLDNASVFREIE--NPKRILCATFL----DGSELLVGGDNEW 230 (362)
T ss_pred cc---CCcceeeEE-----cCCCCEEEEEeccE-EEEEecccHhHhhhhh--ccccceeeeec----CCceEEEecCCce
Confidence 22 223344899 67899888887765 8899998876665553 33556777543 6789999999999
Q ss_pred EEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCC
Q 000685 239 LILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSF 298 (1352)
Q Consensus 239 VrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg 298 (1352)
|++||.++..+ .+.+.+|...|.++.+... +++.+|+|+|.||.|+|||++..
T Consensus 231 i~~~D~ds~~~------~~~~~AH~~RVK~i~~~~~-~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 231 ISLKDTDSDTP------LTEFLAHENRVKDIASYTN-PEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEEeccCCCcc------ceeeecchhheeeeEEEec-CCceEEEEeccCceEEEEEcccc
Confidence 99999988654 4447999999999995542 36789999999999999999865
No 115
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.81 E-value=3.2e-18 Score=182.75 Aligned_cols=234 Identities=16% Similarity=0.239 Sum_probs=191.1
Q ss_pred EecCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccC
Q 000685 6 AFRPTNDKIVKIQLHPTHP-WLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1352)
Q Consensus 6 ~L~gHs~~V~~lafSPdg~-~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~ 84 (1352)
.++||++.|-.++|+|..+ .+++++.|.+|++||...++++..+.....+....-.|++.+++.+.
T Consensus 59 ~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~------------- 125 (313)
T KOG1407|consen 59 VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGN------------- 125 (313)
T ss_pred cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEec-------------
Confidence 4689999999999999765 99999999999999999999999988655444445569999998876
Q ss_pred CceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEEEeeCCccccccccccCC
Q 000685 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDN 164 (1352)
Q Consensus 85 g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl~t~~~~~i~~~~~h~ 164 (1352)
.|..|.+.|.++.+... .......+.-++|+.++..++++.+.+.+-++.+... +.+.....|.
T Consensus 126 --------kdD~it~id~r~~~~~~------~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL--kpv~si~AH~ 189 (313)
T KOG1407|consen 126 --------KDDRITFIDARTYKIVN------EEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSL--KPVQSIKAHP 189 (313)
T ss_pred --------CcccEEEEEecccceee------hhcccceeeeeeecCCCCEEEEecCCceEEEEecccc--ccccccccCC
Confidence 56778888887765542 1122445677889877774555555444446666643 4577789999
Q ss_pred CCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeC
Q 000685 165 KSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSA 244 (1352)
Q Consensus 165 ~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl 244 (1352)
....||.| +|+|+++++|+.|..+.+||+...-|++.+. .|.-+|..+. |+.+|++|++||.|..|-|=++
T Consensus 190 snCicI~f-----~p~GryfA~GsADAlvSLWD~~ELiC~R~is-RldwpVRTlS---FS~dg~~lASaSEDh~IDIA~v 260 (313)
T KOG1407|consen 190 SNCICIEF-----DPDGRYFATGSADALVSLWDVDELICERCIS-RLDWPVRTLS---FSHDGRMLASASEDHFIDIAEV 260 (313)
T ss_pred cceEEEEE-----CCCCceEeeccccceeeccChhHhhhheeec-cccCceEEEE---eccCcceeeccCccceEEeEec
Confidence 99999999 8899999999999999999999988888887 8999999997 8999999999999999999999
Q ss_pred CCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECC
Q 000685 245 DHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGAD 287 (1352)
Q Consensus 245 ~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~D 287 (1352)
.+|..+.+ ..|.++-+.|+||| ...+|+-+++|
T Consensus 261 etGd~~~e-------I~~~~~t~tVAWHP---k~~LLAyA~dd 293 (313)
T KOG1407|consen 261 ETGDRVWE-------IPCEGPTFTVAWHP---KRPLLAYACDD 293 (313)
T ss_pred ccCCeEEE-------eeccCCceeEEecC---CCceeeEEecC
Confidence 99987776 34778899999999 67888877765
No 116
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=9.2e-19 Score=185.27 Aligned_cols=253 Identities=16% Similarity=0.183 Sum_probs=189.9
Q ss_pred CCCeeeeeecCCCCeEEEEEecCcEEEE-EeeCCc-cccccccccCCCCeEEEEEeeccccC-CCCEEEEEECCCcEEEE
Q 000685 120 TSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMR-GRDIPKQELDNKSLVCMEFLSRSAVG-DVPLVAFGSSDGVIRVL 196 (1352)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~D~~I~w-Dl~t~~-~~~i~~~~~h~~~V~~vaf~P~s~Sp-dg~~LasGs~DGtIrIW 196 (1352)
...|..+...--|+ .|++|+.|++|++ ...... ...+..+.+|.++|..++|. +| -|.+|++++.||.|.||
T Consensus 11 ~D~IHda~lDyygk-rlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wa----hPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 11 EDMIHDAQLDYYGK-RLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWA----HPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhHhhhhhhcc-eeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeec----ccccCcEeeEeecCceEEEE
Confidence 55666666666677 8999999999966 655433 35667789999999999994 33 58999999999999999
Q ss_pred ECCCCeEEE--EEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeecc
Q 000685 197 SMISWKLVR--RYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRV 274 (1352)
Q Consensus 197 Dl~t~~~i~--~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~ 274 (1352)
.-.+++..+ ... .|...|++++|- .+.-|-.|++++.||.|.|.++++... +........|.-+|++++|.|.
T Consensus 86 ke~~g~w~k~~e~~-~h~~SVNsV~wa-pheygl~LacasSDG~vsvl~~~~~g~---w~t~ki~~aH~~GvnsVswapa 160 (299)
T KOG1332|consen 86 KEENGRWTKAYEHA-AHSASVNSVAWA-PHEYGLLLACASSDGKVSVLTYDSSGG---WTTSKIVFAHEIGVNSVSWAPA 160 (299)
T ss_pred ecCCCchhhhhhhh-hhcccceeeccc-ccccceEEEEeeCCCcEEEEEEcCCCC---ccchhhhhccccccceeeecCc
Confidence 988774432 333 799999999964 667788999999999999999886521 1122336789999999999994
Q ss_pred CCCC-----------CEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCC-----CEEEEecCCe--
Q 000685 275 MGGS-----------PQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNL-----DILTCVKDSH-- 336 (1352)
Q Consensus 275 ~~dg-----------~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg-----~lLS~s~Dg~-- 336 (1352)
...+ ..|++||.|+.|+||+..+++ ......+.+|++.|+.++|.|.- .+.+||.||+
T Consensus 161 ~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~----w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~vi 236 (299)
T KOG1332|consen 161 SAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS----WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVI 236 (299)
T ss_pred CCCccccccCcccccceeeccCCccceeeeecCCcc----hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEE
Confidence 2222 579999999999999998873 22223489999999999999973 2568999998
Q ss_pred EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCC
Q 000685 337 IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1352)
Q Consensus 337 IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~ 401 (1352)
||-.+. .+. .|. ...+..- ...+|.+.|+. .+++|+.++.|+.| .+|...
T Consensus 237 Iwt~~~-e~e-----~wk------~tll~~f-~~~~w~vSWS~-sGn~LaVs~GdNkv-tlwke~ 286 (299)
T KOG1332|consen 237 IWTKDE-EYE-----PWK------KTLLEEF-PDVVWRVSWSL-SGNILAVSGGDNKV-TLWKEN 286 (299)
T ss_pred EEEecC-ccC-----ccc------ccccccC-CcceEEEEEec-cccEEEEecCCcEE-EEEEeC
Confidence 686652 111 110 1111222 23799999999 68889999999997 688643
No 117
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=3.5e-18 Score=194.21 Aligned_cols=289 Identities=19% Similarity=0.264 Sum_probs=211.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--cEEEEEeccCccceEEeccccceeEecccccCCCccccccCCceE
Q 000685 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHR--QVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVK 88 (1352)
Q Consensus 11 s~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg--~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~ 88 (1352)
.++|++|.|||..+.|++++.||+++||-++.. ..+..+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~-------------------------------------- 254 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH-------------------------------------- 254 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeee--------------------------------------
Confidence 368999999999999999999999999987621 1111111
Q ss_pred EEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccccccCC-CC
Q 000685 89 QVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDN-KS 166 (1352)
Q Consensus 89 sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~h~-~~ 166 (1352)
| ...+|.+.+|.|+|...+++++....+ .||+.+.+...+....++. ..
T Consensus 255 ---l--------------------------~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~ 305 (514)
T KOG2055|consen 255 ---L--------------------------EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKS 305 (514)
T ss_pred ---e--------------------------ccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccch
Confidence 1 045678889999998566666655555 8899988776655544443 35
Q ss_pred eEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCC
Q 000685 167 LVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH 246 (1352)
Q Consensus 167 V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~t 246 (1352)
+..... |+++++|+..+..|.|.+....+++.+..+. -.+.|..++ |+.++..|++++.+|.|.+||++.
T Consensus 306 ~e~FeV-----Shd~~fia~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~---fsSdsk~l~~~~~~GeV~v~nl~~ 375 (514)
T KOG2055|consen 306 MERFEV-----SHDSNFIAIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFT---FSSDSKELLASGGTGEVYVWNLRQ 375 (514)
T ss_pred hheeEe-----cCCCCeEEEcccCceEEeehhhhhhhhheee--eccEEeeEE---EecCCcEEEEEcCCceEEEEecCC
Confidence 556667 7899999999999999999999999988874 668888887 568889999999999999999999
Q ss_pred CCccceecccccccccccce--EEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCC
Q 000685 247 GQDSRELVPKLSLKAHDGGV--VAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAP 324 (1352)
Q Consensus 247 g~~~~~~~~~~~l~gH~~~V--~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafsp 324 (1352)
..+++.|.. +++| ++++.++ ++.||++||+.|.|.|||..+...-..-+++..+..-...|+++.|++
T Consensus 376 ~~~~~rf~D-------~G~v~gts~~~S~---ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~ 445 (514)
T KOG2055|consen 376 NSCLHRFVD-------DGSVHGTSLCISL---NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH 445 (514)
T ss_pred cceEEEEee-------cCccceeeeeecC---CCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc
Confidence 988776522 2223 4566666 788999999999999999876544444445555677778899999999
Q ss_pred CCCEEE-EecCC----eEEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEec
Q 000685 325 NLDILT-CVKDS----HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1352)
Q Consensus 325 dg~lLS-~s~Dg----~IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd 399 (1352)
++++|+ ||.-. ++-.+.+-+. + ..-|.. ...-..|.||+|+| ++.++|.|..+|.+ ++|.
T Consensus 446 d~qiLAiaS~~~knalrLVHvPS~TV------F----sNfP~~---n~~vg~vtc~aFSP-~sG~lAvGNe~grv-~l~k 510 (514)
T KOG2055|consen 446 DAQILAIASRVKKNALRLVHVPSCTV------F----SNFPTS---NTKVGHVTCMAFSP-NSGYLAVGNEAGRV-HLFK 510 (514)
T ss_pred chhhhhhhhhccccceEEEeccceee------e----ccCCCC---CCcccceEEEEecC-CCceEEeecCCCce-eeEe
Confidence 999885 44322 2333322110 0 000100 11123799999999 56679999999997 7996
Q ss_pred CC
Q 000685 400 PR 401 (1352)
Q Consensus 400 ~~ 401 (1352)
+.
T Consensus 511 L~ 512 (514)
T KOG2055|consen 511 LH 512 (514)
T ss_pred ec
Confidence 53
No 118
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.80 E-value=5.8e-18 Score=198.82 Aligned_cols=346 Identities=16% Similarity=0.153 Sum_probs=236.5
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe--ccCccceEEec--cccceeEecccccCCCccccccCCceEE
Q 000685 14 IVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELK--AGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAMRGGSVKQ 89 (1352)
Q Consensus 14 V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~--~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~~l~~g~V~s 89 (1352)
.-++.|++...+|...-.|+.+.|||++.-..+.... ..|...|+.+. |.. -.+.+..| +..+....
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~n------v~~~~~ac---lp~~cF~T 397 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCN------VHSPTAAC---LPRGCFTT 397 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeecccccc------ccCccccc---CCccceeE
Confidence 4578899999999999999999999997643322211 13445555443 100 00001111 11111111
Q ss_pred EEEcCCeEEEEEcCCcccccc--------c------------------------cccccccCCCCeeeeeecCCCCeEEE
Q 000685 90 VNFYDDDVRFWQLWRNRAAAA--------E------------------------APTAVSNVTSGFASPPPSTKGRHFLV 137 (1352)
Q Consensus 90 VaF~Dg~IrlWDl~t~~~i~~--------~------------------------~~~~~~~~~~~V~slafspdg~~lLa 137 (1352)
+. .|++||+|++..+..-.. . ...........+++++.+|+|+ .|+
T Consensus 398 CS-sD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq-hLA 475 (1080)
T KOG1408|consen 398 CS-SDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ-HLA 475 (1080)
T ss_pred ec-CCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc-eec
Confidence 11 799999999876221000 0 0000011134689999999998 899
Q ss_pred EEecCcEEEE-EeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCCe
Q 000685 138 ICCVNKAIFL-DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-KLVRRYTGGHKGSI 215 (1352)
Q Consensus 138 sgs~D~~I~w-Dl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~-~~i~~l~~gH~~~V 215 (1352)
+|...|.+++ ++...+. ....+.|...|.|+.|+-. .-..++|++++.|..|.|||.... .++.++. +|...|
T Consensus 476 sGDr~GnlrVy~Lq~l~~--~~~~eAHesEilcLeyS~p--~~~~kLLASasrdRlIHV~Dv~rny~l~qtld-~HSssI 550 (1080)
T KOG1408|consen 476 SGDRGGNLRVYDLQELEY--TCFMEAHESEILCLEYSFP--VLTNKLLASASRDRLIHVYDVKRNYDLVQTLD-GHSSSI 550 (1080)
T ss_pred ccCccCceEEEEehhhhh--hhheecccceeEEEeecCc--hhhhHhhhhccCCceEEEEecccccchhhhhc-ccccce
Confidence 9999999976 8887643 5567899999999999421 113478999999999999999754 5556665 999999
Q ss_pred eEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEEC
Q 000685 216 SCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDT 295 (1352)
Q Consensus 216 ~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl 295 (1352)
+++. |..+.-...+++++.|..|.+--.........+ +..+-.-....++.++..| ...++++++.|+.|+|||+
T Consensus 551 TsvK-Fa~~gln~~MiscGADksimFr~~qk~~~g~~f-~r~t~t~~ktTlYDm~Vdp---~~k~v~t~cQDrnirif~i 625 (1080)
T KOG1408|consen 551 TSVK-FACNGLNRKMISCGADKSIMFRVNQKASSGRLF-PRHTQTLSKTTLYDMAVDP---TSKLVVTVCQDRNIRIFDI 625 (1080)
T ss_pred eEEE-EeecCCceEEEeccCchhhheehhccccCceec-cccccccccceEEEeeeCC---CcceEEEEecccceEEEec
Confidence 9998 323333477899999988754322211111111 1111111134588999999 7889999999999999999
Q ss_pred CCCeEEEEecCCCcccccCCceeEEEeCCCCCEEEEe-cCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccE
Q 000685 296 VSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCV-KDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRV 372 (1352)
Q Consensus 296 ~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lLS~s-~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V 372 (1352)
.+|+..+.|+. -++|.+....+...|.|-+|+++ .|.+ ++|+.++ .++....+|+. .|
T Consensus 626 ~sgKq~k~FKg---s~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg---------------EcvA~m~GHsE-~V 686 (1080)
T KOG1408|consen 626 ESGKQVKSFKG---SRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG---------------ECVAQMTGHSE-AV 686 (1080)
T ss_pred cccceeeeecc---cccCCCceEEEEECCCccEEEEeecCCceEEEEeccc---------------hhhhhhcCcch-he
Confidence 99999999865 36777777789999999988654 5665 7998876 34666778887 99
Q ss_pred EEEEEecCCCcEEEEEECCCeEEEEecCC
Q 000685 373 YCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1352)
Q Consensus 373 ~~la~sp~~~~lLatGs~DG~IlriWd~~ 401 (1352)
+++.|.++ -..|++.+.||.| .+|.+.
T Consensus 687 TG~kF~nD-CkHlISvsgDgCI-FvW~lp 713 (1080)
T KOG1408|consen 687 TGVKFLND-CKHLISVSGDGCI-FVWKLP 713 (1080)
T ss_pred eeeeeccc-chhheeecCCceE-EEEECc
Confidence 99999994 5558889999998 699754
No 119
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=1.8e-18 Score=206.49 Aligned_cols=237 Identities=21% Similarity=0.287 Sum_probs=189.4
Q ss_pred eeeeeecCCCCeEEEEEecCcEE-EEEeeC-CccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCC
Q 000685 123 FASPPPSTKGRHFLVICCVNKAI-FLDLVT-MRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS 200 (1352)
Q Consensus 123 V~slafspdg~~lLasgs~D~~I-~wDl~t-~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t 200 (1352)
+..|+|+.-..++|++++.+|.| +||+.. .+.+.+..+..|...++++.||+ ....+|++||.||+|++||++.
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~----tep~iliSGSQDg~vK~~DlR~ 165 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHS----TEPNILISGSQDGTVKCWDLRS 165 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeecc----CCccEEEecCCCceEEEEeeec
Confidence 45677776556699999999988 788865 22334456788999999999974 4678999999999999999999
Q ss_pred CeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCE
Q 000685 201 WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQ 280 (1352)
Q Consensus 201 ~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~ 280 (1352)
.+...++. +....|..+.| ....++.|+++...|.+++||++.... +.+.+.+|.++|.++.||| ++.+
T Consensus 166 ~~S~~t~~-~nSESiRDV~f--sp~~~~~F~s~~dsG~lqlWDlRqp~r-----~~~k~~AH~GpV~c~nwhP---nr~~ 234 (839)
T KOG0269|consen 166 KKSKSTFR-SNSESIRDVKF--SPGYGNKFASIHDSGYLQLWDLRQPDR-----CEKKLTAHNGPVLCLNWHP---NREW 234 (839)
T ss_pred cccccccc-ccchhhhceee--ccCCCceEEEecCCceEEEeeccCchh-----HHHHhhcccCceEEEeecC---CCce
Confidence 88888887 78889999984 345688999999999999999997652 2344789999999999999 8999
Q ss_pred EEEEECCCcEEEEECCCCeEEEEecCCCccccc-CCceeEEEeCCCCC-EE-EEec--CC--eEEeccCCcccccccCcc
Q 000685 281 LITIGADKTLAIWDTVSFKELRRIKPVPKLACH-SVASWCHPRAPNLD-IL-TCVK--DS--HIWAIEHPTYSALTRPLC 353 (1352)
Q Consensus 281 LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~h-s~~V~svafspdg~-lL-S~s~--Dg--~IWDi~t~~~~~~~~~l~ 353 (1352)
|+|||.|+.|+|||+.+.+.-.. ..-+ ..+|.++.|-|+.. .| +|+. |- +|||++..
T Consensus 235 lATGGRDK~vkiWd~t~~~~~~~------~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP---------- 298 (839)
T KOG0269|consen 235 LATGGRDKMVKIWDMTDSRAKPK------HTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP---------- 298 (839)
T ss_pred eeecCCCccEEEEeccCCCccce------eEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc----------
Confidence 99999999999999987553221 1122 34677999999866 33 4542 22 49999853
Q ss_pred ccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEE
Q 000685 354 ELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVII 395 (1352)
Q Consensus 354 ~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~Il 395 (1352)
..|..++..|.+ .+..++|...+...+.+++.||+|+
T Consensus 299 ----YIP~~t~~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 299 ----YIPYATFLEHTD-SVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred ----cccceeeeccCc-cccceeccCCCceeeEeecCccHHH
Confidence 467788888988 8999999987888999999999974
No 120
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.79 E-value=5.3e-18 Score=191.34 Aligned_cols=249 Identities=14% Similarity=0.166 Sum_probs=202.1
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec--cccceeEecccccCCCcccc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEA 81 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~~ 81 (1352)
+.+|.||+..|+.+.|||+...+++++.|-.|+||............ .|...+..+. +.|.||.+++
T Consensus 254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~-~h~~~V~~ls~h~tgeYllsAs---------- 322 (506)
T KOG0289|consen 254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSR-PHEEPVTGLSLHPTGEYLLSAS---------- 322 (506)
T ss_pred hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccc-cccccceeeeeccCCcEEEEec----------
Confidence 56899999999999999999999999999999999987766554444 3445555554 8999999987
Q ss_pred ccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCcccccccc
Q 000685 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQ 160 (1352)
Q Consensus 82 l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~ 160 (1352)
.|++..+.|++++.++... ......-.+++.+|+|||- +|.+|..|+.+ +||+.++. .+..+
T Consensus 323 -----------~d~~w~Fsd~~~g~~lt~v---s~~~s~v~~ts~~fHpDgL-ifgtgt~d~~vkiwdlks~~--~~a~F 385 (506)
T KOG0289|consen 323 -----------NDGTWAFSDISSGSQLTVV---SDETSDVEYTSAAFHPDGL-IFGTGTPDGVVKIWDLKSQT--NVAKF 385 (506)
T ss_pred -----------CCceEEEEEccCCcEEEEE---eeccccceeEEeeEcCCce-EEeccCCCceEEEEEcCCcc--ccccC
Confidence 6788888999988776311 1111134689999999996 99999999999 67998875 46677
Q ss_pred ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEE
Q 000685 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240 (1352)
Q Consensus 161 ~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVr 240 (1352)
.+|.++|..|.| +.+|-|++++++|+.|++||++..+..+++.......|.+++ |...|.+|+.++.|=+|+
T Consensus 386 pght~~vk~i~F-----sENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~---fD~SGt~L~~~g~~l~Vy 457 (506)
T KOG0289|consen 386 PGHTGPVKAISF-----SENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLS---FDQSGTYLGIAGSDLQVY 457 (506)
T ss_pred CCCCCceeEEEe-----ccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEE---EcCCCCeEEeecceeEEE
Confidence 889999999999 889999999999999999999988888877644555788887 899999999998887777
Q ss_pred EEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEEC
Q 000685 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDT 295 (1352)
Q Consensus 241 VWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl 295 (1352)
+++-.+.+ |.....+..|.+..+++.|.. ...+++++|.|..++++.+
T Consensus 458 ~~~k~~k~----W~~~~~~~~~sg~st~v~Fg~---~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 458 ICKKKTKS----WTEIKELADHSGLSTGVRFGE---HAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEeccccc----ceeeehhhhcccccceeeecc---cceEEeeccchhheEEeec
Confidence 77754433 233344677888899999987 6789999999999998864
No 121
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=6.7e-18 Score=183.21 Aligned_cols=226 Identities=21% Similarity=0.348 Sum_probs=185.4
Q ss_pred EEEEEecCcEEEEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCC
Q 000685 135 FLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGS 214 (1352)
Q Consensus 135 lLasgs~D~~I~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~ 214 (1352)
.+++...++.+.+ ..+..+.+|.+.|..++. ....+.+.+++.|.+-+||.+++++|+.++. ||.+.
T Consensus 126 rivssFk~~t~~~-------~lvre~~GHkDGiW~Vaa-----~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~-GH~GS 192 (481)
T KOG0300|consen 126 RIVSSFKDGTVKF-------RLVRELEGHKDGIWHVAA-----DSTQPICGTASADHTARIWSLESGACLATYT-GHTGS 192 (481)
T ss_pred hheeeecCCceeE-------eehhhhcccccceeeehh-----hcCCcceeecccccceeEEeeccccceeeec-ccccc
Confidence 3555556665433 234456899999999988 4566789999999999999999999999998 99999
Q ss_pred eeEEEEeeeCCCCCEEEEEeCCCcEEEEeC------CC--------C--------C-----------ccce-eccccccc
Q 000685 215 ISCLMTFMASSGEALLVSGGSDGLLILWSA------DH--------G--------Q-----------DSRE-LVPKLSLK 260 (1352)
Q Consensus 215 V~slawf~~s~dg~~LaSgS~DGtVrVWDl------~t--------g--------~-----------~~~~-~~~~~~l~ 260 (1352)
|+|+. |++.+.+++++|.|++-+||.. .. + + .-.+ -.|...|.
T Consensus 193 VNsik---fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt 269 (481)
T KOG0300|consen 193 VNSIK---FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLT 269 (481)
T ss_pred eeeEE---eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeee
Confidence 99998 8999999999999999999972 11 0 0 0001 13566789
Q ss_pred ccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEE-EEecCCe--E
Q 000685 261 AHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--I 337 (1352)
Q Consensus 261 gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lL-S~s~Dg~--I 337 (1352)
+|...|.+..|-. ++..+++++.|++..+||+.+|..++. +.||....+.++-+|..+++ +.+.|.+ +
T Consensus 270 gH~~vV~a~dWL~---gg~Q~vTaSWDRTAnlwDVEtge~v~~------LtGHd~ELtHcstHptQrLVvTsSrDtTFRL 340 (481)
T KOG0300|consen 270 GHRAVVSACDWLA---GGQQMVTASWDRTANLWDVETGEVVNI------LTGHDSELTHCSTHPTQRLVVTSSRDTTFRL 340 (481)
T ss_pred ccccceEehhhhc---CcceeeeeeccccceeeeeccCceecc------ccCcchhccccccCCcceEEEEeccCceeEe
Confidence 9999999999988 799999999999999999999999887 78999999999999999876 6788875 8
Q ss_pred EeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCCC
Q 000685 338 WAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSL 403 (1352)
Q Consensus 338 WDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~~~ 403 (1352)
||++.. ...+..|.+|.+ .|+++.|.. + ..+++|++|.+| ++||++.+
T Consensus 341 WDFRea--------------I~sV~VFQGHtd-tVTS~vF~~-d-d~vVSgSDDrTv-KvWdLrNM 388 (481)
T KOG0300|consen 341 WDFREA--------------IQSVAVFQGHTD-TVTSVVFNT-D-DRVVSGSDDRTV-KVWDLRNM 388 (481)
T ss_pred ccchhh--------------cceeeeeccccc-ceeEEEEec-C-CceeecCCCceE-EEeeeccc
Confidence 999843 133567889998 999999998 3 449999999997 89998853
No 122
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.78 E-value=6.6e-18 Score=199.71 Aligned_cols=236 Identities=19% Similarity=0.305 Sum_probs=185.9
Q ss_pred eEEecCCCCCEEE-EEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCcccc
Q 000685 4 LKAFRPTNDKIVK-IQLHPTHP-WLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEA 81 (1352)
Q Consensus 4 l~~L~gHs~~V~~-lafSPdg~-~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~ 81 (1352)
.+.|++|.+.|.+ ++|-+..+ +|++|+.|++|.+|......++.++..|
T Consensus 50 ~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH----------------------------- 100 (745)
T KOG0301|consen 50 THAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGH----------------------------- 100 (745)
T ss_pred ceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhcc-----------------------------
Confidence 4567888888888 88876433 5889999999999998887777766632
Q ss_pred ccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEEEeeCCccccccccc
Q 000685 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQE 161 (1352)
Q Consensus 82 l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl~t~~~~~i~~~~ 161 (1352)
.+.|.|+....++ .+++|+.|.+.+++... + ......
T Consensus 101 --------------------------------------~snVC~ls~~~~~--~~iSgSWD~TakvW~~~-~--l~~~l~ 137 (745)
T KOG0301|consen 101 --------------------------------------KSNVCSLSIGEDG--TLISGSWDSTAKVWRIG-E--LVYSLQ 137 (745)
T ss_pred --------------------------------------ccceeeeecCCcC--ceEecccccceEEecch-h--hhcccC
Confidence 4445566555555 38889988888443322 2 233478
Q ss_pred cCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEE
Q 000685 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1352)
Q Consensus 162 ~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrV 241 (1352)
+|...|..+.+.| ++ .++|||.|.+|++|.- +++++++. ||++.|..++.. ++..|+||+.||.|++
T Consensus 138 gH~asVWAv~~l~-----e~-~~vTgsaDKtIklWk~--~~~l~tf~-gHtD~VRgL~vl----~~~~flScsNDg~Ir~ 204 (745)
T KOG0301|consen 138 GHTASVWAVASLP-----EN-TYVTGSADKTIKLWKG--GTLLKTFS-GHTDCVRGLAVL----DDSHFLSCSNDGSIRL 204 (745)
T ss_pred CcchheeeeeecC-----CC-cEEeccCcceeeeccC--Cchhhhhc-cchhheeeeEEe----cCCCeEeecCCceEEE
Confidence 9999999999964 44 8999999999999975 78888887 999999999832 4557999999999999
Q ss_pred EeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEE
Q 000685 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHP 321 (1352)
Q Consensus 242 WDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~sva 321 (1352)
|++ +|.++.+ +.||..-|+++...+ ++..++|+|.|++++||+.. .|.+.+ .-.+..||++.
T Consensus 205 w~~-~ge~l~~------~~ghtn~vYsis~~~---~~~~Ivs~gEDrtlriW~~~--e~~q~I------~lPttsiWsa~ 266 (745)
T KOG0301|consen 205 WDL-DGEVLLE------MHGHTNFVYSISMAL---SDGLIVSTGEDRTLRIWKKD--ECVQVI------TLPTTSIWSAK 266 (745)
T ss_pred Eec-cCceeee------eeccceEEEEEEecC---CCCeEEEecCCceEEEeecC--ceEEEE------ecCccceEEEE
Confidence 999 5666554 689999999999666 67899999999999999977 666663 33455899999
Q ss_pred eCCCCCEEEEecCCe--EEeccC
Q 000685 322 RAPNLDILTCVKDSH--IWAIEH 342 (1352)
Q Consensus 322 fspdg~lLS~s~Dg~--IWDi~t 342 (1352)
+-++|++++|+.||+ ||....
T Consensus 267 ~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 267 VLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred EeeCCCEEEeccCceEEEEEecc
Confidence 999999999999996 666553
No 123
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=5.8e-17 Score=177.29 Aligned_cols=244 Identities=16% Similarity=0.222 Sum_probs=176.6
Q ss_pred CCCeeeeeecCCCCeEEEEEecCcEEEE-EeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEEC
Q 000685 120 TSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSM 198 (1352)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~D~~I~w-Dl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl 198 (1352)
...|.++.|+|.+. .|++++.|+.+++ |...... .....|..++.+.+|. +...+++|+.||.|+.+|+
T Consensus 13 ~d~IS~v~f~~~~~-~LLvssWDgslrlYdv~~~~l---~~~~~~~~plL~c~F~------d~~~~~~G~~dg~vr~~Dl 82 (323)
T KOG1036|consen 13 EDGISSVKFSPSSS-DLLVSSWDGSLRLYDVPANSL---KLKFKHGAPLLDCAFA------DESTIVTGGLDGQVRRYDL 82 (323)
T ss_pred hhceeeEEEcCcCC-cEEEEeccCcEEEEeccchhh---hhheecCCceeeeecc------CCceEEEeccCceEEEEEe
Confidence 56799999998877 6666778998866 7766532 2345688999999994 4668999999999999999
Q ss_pred CCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCC
Q 000685 199 ISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGS 278 (1352)
Q Consensus 199 ~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg 278 (1352)
.++..... ..|...|.|+. ..+....+++||.|++|++||.+....... +. ....|.++... +
T Consensus 83 n~~~~~~i--gth~~~i~ci~---~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~------~d-~~kkVy~~~v~-----g 145 (323)
T KOG1036|consen 83 NTGNEDQI--GTHDEGIRCIE---YSYEVGCVISGSWDKTIKFWDPRNKVVVGT------FD-QGKKVYCMDVS-----G 145 (323)
T ss_pred cCCcceee--ccCCCceEEEE---eeccCCeEEEcccCccEEEEeccccccccc------cc-cCceEEEEecc-----C
Confidence 98876443 37999999997 677888999999999999999997443332 22 23478888874 6
Q ss_pred CEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCC-EEEEecCCeE-Ee-ccCCcccccccCcccc
Q 000685 279 PQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-ILTCVKDSHI-WA-IEHPTYSALTRPLCEL 355 (1352)
Q Consensus 279 ~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~-lLS~s~Dg~I-WD-i~t~~~~~~~~~l~~~ 355 (1352)
+.|+.|+.|+.|.+||+++.....+.. -..-.-.++|+++.|++. ++++|-||++ .+ ++.... ..
T Consensus 146 ~~LvVg~~~r~v~iyDLRn~~~~~q~r----eS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~--~~------ 213 (323)
T KOG1036|consen 146 NRLVVGTSDRKVLIYDLRNLDEPFQRR----ESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEE--AQ------ 213 (323)
T ss_pred CEEEEeecCceEEEEEcccccchhhhc----cccceeEEEEEEEecCCCceEEEeecceEEEEccCCchH--Hh------
Confidence 799999999999999999866433210 122334577999999765 8889999984 22 221100 00
Q ss_pred CCCCCCeEEecCCc--------ccEEEEEEecCCCcEEEEEECCCeEEEEecCCCCCCcc
Q 000685 356 SSLVPPQVLAHHKK--------LRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVA 407 (1352)
Q Consensus 356 ~~~~~~~~l~~h~~--------~~V~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~i~ 407 (1352)
.....|..|.. -+|++|+|||- ...++||+.||.| .+||+..+..+.
T Consensus 214 ---skkyaFkCHr~~~~~~~~~yPVNai~Fhp~-~~tfaTgGsDG~V-~~Wd~~~rKrl~ 268 (323)
T KOG1036|consen 214 ---SKKYAFKCHRLSEKDTEIIYPVNAIAFHPI-HGTFATGGSDGIV-NIWDLFNRKRLK 268 (323)
T ss_pred ---hhceeEEeeecccCCceEEEEeceeEeccc-cceEEecCCCceE-EEccCcchhhhh
Confidence 01112333321 26899999995 6669999999998 599977544433
No 124
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.3e-17 Score=190.46 Aligned_cols=230 Identities=17% Similarity=0.243 Sum_probs=179.1
Q ss_pred cCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEE
Q 000685 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1352)
Q Consensus 162 ~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrV 241 (1352)
.-.+.|.|++- +|+|.+++.|+-.|.|++|.+.+|.++..+. +|-..|+|+. |+.||.+|+|||.||.|.+
T Consensus 79 v~Pg~v~al~s-----~n~G~~l~ag~i~g~lYlWelssG~LL~v~~-aHYQ~ITcL~---fs~dgs~iiTgskDg~V~v 149 (476)
T KOG0646|consen 79 VLPGPVHALAS-----SNLGYFLLAGTISGNLYLWELSSGILLNVLS-AHYQSITCLK---FSDDGSHIITGSKDGAVLV 149 (476)
T ss_pred ccccceeeeec-----CCCceEEEeecccCcEEEEEeccccHHHHHH-hhccceeEEE---EeCCCcEEEecCCCccEEE
Confidence 34678999988 7899999999999999999999999998886 9999999998 8999999999999999999
Q ss_pred EeCCCC---CccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCcee
Q 000685 242 WSADHG---QDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASW 318 (1352)
Q Consensus 242 WDl~tg---~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~ 318 (1352)
|++..- ...+...|.+.+..|.-.|+.+...+. +-..+|+|+|.|+++++||+..|..+.++. ....+.
T Consensus 150 W~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~G-g~~~rl~TaS~D~t~k~wdlS~g~LLlti~-------fp~si~ 221 (476)
T KOG0646|consen 150 WLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSG-GTNARLYTASEDRTIKLWDLSLGVLLLTIT-------FPSSIK 221 (476)
T ss_pred EEEEeecccccCCCccceeeeccCcceeEEEEecCC-CccceEEEecCCceEEEEEeccceeeEEEe-------cCCcce
Confidence 987531 111234566778999999999998872 135799999999999999999999888753 334567
Q ss_pred EEEeCCCCCEE-EEecCCeEEeccCCcccccccCc---cccCCCCCCeEEecCCc-ccEEEEEEecCCCcEEEEEECCCe
Q 000685 319 CHPRAPNLDIL-TCVKDSHIWAIEHPTYSALTRPL---CELSSLVPPQVLAHHKK-LRVYCMVAHSLQPHLVATGTNVGV 393 (1352)
Q Consensus 319 svafspdg~lL-S~s~Dg~IWDi~t~~~~~~~~~l---~~~~~~~~~~~l~~h~~-~~V~~la~sp~~~~lLatGs~DG~ 393 (1352)
+++.+|-.+.+ .|+++|.||-..-......+..+ ...........+.+|.. ..|+|++.+- ++.+|++|+.||.
T Consensus 222 av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-DgtlLlSGd~dg~ 300 (476)
T KOG0646|consen 222 AVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGTLLLSGDEDGK 300 (476)
T ss_pred eEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec-CccEEEeeCCCCC
Confidence 99999998855 88999997755422221111110 11112233445666654 5899999999 7999999999999
Q ss_pred EEEEecCCCCCCccccC
Q 000685 394 IISEFDPRSLPAVAPLP 410 (1352)
Q Consensus 394 IlriWd~~~~p~i~~l~ 410 (1352)
| ++||+.++..+.++.
T Consensus 301 V-cvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 301 V-CVWDIYSKQCIRTLQ 316 (476)
T ss_pred E-EEEecchHHHHHHHh
Confidence 8 799999887776654
No 125
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=9.5e-17 Score=174.98 Aligned_cols=230 Identities=13% Similarity=0.157 Sum_probs=159.6
Q ss_pred ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECC---------CCeEEEEEecCCCCCeeEEEEeeeCCCCCEEE
Q 000685 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI---------SWKLVRRYTGGHKGSISCLMTFMASSGEALLV 231 (1352)
Q Consensus 161 ~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~---------t~~~i~~l~~gH~~~V~slawf~~s~dg~~La 231 (1352)
+.|.+.|..|.|.+ ..-|+.++++|.|++++||.-. .+....++. .....|+.++ |....-|-.++
T Consensus 56 rah~~Si~rV~WAh---PEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~-DsrssV~DV~-FaP~hlGLklA 130 (361)
T KOG2445|consen 56 RAHDGSIWRVVWAH---PEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLV-DSRSSVTDVK-FAPKHLGLKLA 130 (361)
T ss_pred EecCCcEEEEEecC---ccccceEEEEecCCceeeeeecccccccccceeEEEEEee-cCCcceeEEE-ecchhcceEEE
Confidence 56778888888864 3358999999999999999752 233344554 6778999998 33445688999
Q ss_pred EEeCCCcEEEEeCCCCCccceecccccc-------cccccceEEEEeeccCCCCCEEEEEECC-----CcEEEEECCCCe
Q 000685 232 SGGSDGLLILWSADHGQDSRELVPKLSL-------KAHDGGVVAVELSRVMGGSPQLITIGAD-----KTLAIWDTVSFK 299 (1352)
Q Consensus 232 SgS~DGtVrVWDl~tg~~~~~~~~~~~l-------~gH~~~V~slafsp~~~dg~~LaSgs~D-----gtV~IWDl~tg~ 299 (1352)
+++.||.+|||+......+..+.....+ ..|.....|+.|+|..-..++|+.|+++ +.++||......
T Consensus 131 ~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~ 210 (361)
T KOG2445|consen 131 AASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG 210 (361)
T ss_pred EeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc
Confidence 9999999999987654443333222222 2566778999999854456788888876 589999876543
Q ss_pred -EEEEecCCCcccccCCceeEEEeCCC-CC---EE-EEecCC-eEEeccCCcccccccCc--cccC---CCCCCeEEecC
Q 000685 300 -ELRRIKPVPKLACHSVASWCHPRAPN-LD---IL-TCVKDS-HIWAIEHPTYSALTRPL--CELS---SLVPPQVLAHH 367 (1352)
Q Consensus 300 -~l~~~~~~~~l~~hs~~V~svafspd-g~---lL-S~s~Dg-~IWDi~t~~~~~~~~~l--~~~~---~~~~~~~l~~h 367 (1352)
.... +..+.+|+..|+.++|.|+ |+ +| +++.|| +||.+......-..... .... ....+..+..|
T Consensus 211 rKw~k---va~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H 287 (361)
T KOG2445|consen 211 RKWLK---VAELPDHTDPIRDISWAPNIGRSYHLLAVATKDGVRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDH 287 (361)
T ss_pred ceeee---ehhcCCCCCcceeeeeccccCCceeeEEEeecCcEEEEEEeeccchhhhhcccCCCCccccceEEeeeccCC
Confidence 3333 3557899999999999998 43 44 678997 69998742110000000 0000 11123345666
Q ss_pred CcccEEEEEEecCCCcEEEEEECCCeEEEEecCC
Q 000685 368 KKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1352)
Q Consensus 368 ~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~ 401 (1352)
.. .||.+.|+- .+..|++.++||.| |+|...
T Consensus 288 ~~-~VWrv~wNm-tGtiLsStGdDG~V-RLWkan 318 (361)
T KOG2445|consen 288 NG-EVWRVRWNM-TGTILSSTGDDGCV-RLWKAN 318 (361)
T ss_pred CC-ceEEEEEee-eeeEEeecCCCcee-eehhhh
Confidence 65 899999998 68889999999997 999643
No 126
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.8e-16 Score=197.28 Aligned_cols=208 Identities=18% Similarity=0.274 Sum_probs=154.9
Q ss_pred CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCC---C---eEEEEEecCCCCCeeEEEEeeeCC-CCCEEEEEeCC
Q 000685 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS---W---KLVRRYTGGHKGSISCLMTFMASS-GEALLVSGGSD 236 (1352)
Q Consensus 164 ~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t---~---~~i~~l~~gH~~~V~slawf~~s~-dg~~LaSgS~D 236 (1352)
...-++++|.+....+. .+|+.|..||.|.+||... + ..+.+.. .|++.|..+. |++ .+++|++|+.|
T Consensus 64 ~~rF~kL~W~~~g~~~~-GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~-~h~G~V~gLD---fN~~q~nlLASGa~~ 138 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSH-GLIAGGLEDGNIVLYDPASIIANASEEVLATKS-KHTGPVLGLD---FNPFQGNLLASGADD 138 (1049)
T ss_pred cccceeeeecccCCCcc-ceeeccccCCceEEecchhhccCcchHHHhhhc-ccCCceeeee---ccccCCceeeccCCC
Confidence 45678899954321111 2589999999999999865 2 2334444 7999999998 555 45699999999
Q ss_pred CcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCC-
Q 000685 237 GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSV- 315 (1352)
Q Consensus 237 GtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~- 315 (1352)
|.|.|||+.+-+.-..+ . -....+.|.+++|+. .....|++++.+|++.|||++..+.+-.+ ..|..
T Consensus 139 geI~iWDlnn~~tP~~~--~--~~~~~~eI~~lsWNr--kvqhILAS~s~sg~~~iWDlr~~~pii~l------s~~~~~ 206 (1049)
T KOG0307|consen 139 GEILIWDLNKPETPFTP--G--SQAPPSEIKCLSWNR--KVSHILASGSPSGRAVIWDLRKKKPIIKL------SDTPGR 206 (1049)
T ss_pred CcEEEeccCCcCCCCCC--C--CCCCcccceEeccch--hhhHHhhccCCCCCceeccccCCCccccc------ccCCCc
Confidence 99999999874422211 0 122456799999998 46788999999999999999987665553 33333
Q ss_pred -ceeEEEeCCCCC--EEEEecCCe-----EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEE
Q 000685 316 -ASWCHPRAPNLD--ILTCVKDSH-----IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVAT 387 (1352)
Q Consensus 316 -~V~svafspdg~--lLS~s~Dg~-----IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLat 387 (1352)
.+..+.|||++. +++++.|.+ +||++.. ..+...+.+|.. .|.+|.|++.|..++++
T Consensus 207 ~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a--------------ssP~k~~~~H~~-GilslsWc~~D~~lllS 271 (1049)
T KOG0307|consen 207 MHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA--------------SSPLKILEGHQR-GILSLSWCPQDPRLLLS 271 (1049)
T ss_pred cceeeeeeCCCCceeeeeecCCCCCceeEeeccccc--------------CCchhhhccccc-ceeeeccCCCCchhhhc
Confidence 466899999965 666766653 7999854 245667778887 89999999998899999
Q ss_pred EECCCeEEEEecCCCCC
Q 000685 388 GTNVGVIISEFDPRSLP 404 (1352)
Q Consensus 388 Gs~DG~IlriWd~~~~p 404 (1352)
++.|+.|+ .|+..+..
T Consensus 272 sgkD~~ii-~wN~~tgE 287 (1049)
T KOG0307|consen 272 SGKDNRII-CWNPNTGE 287 (1049)
T ss_pred ccCCCCee-EecCCCce
Confidence 99999984 99977543
No 127
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.77 E-value=1.1e-15 Score=178.70 Aligned_cols=245 Identities=16% Similarity=0.212 Sum_probs=181.1
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec--cccceeEecccccCCCcccc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEA 81 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~~ 81 (1352)
+++|+||.+.|+|++|+.||+++++|+.|..|.||+-. .-..++..|.+.|.+++ |-.+.|++++.+
T Consensus 46 lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k---lEG~LkYSH~D~IQCMsFNP~~h~LasCsLs-------- 114 (1081)
T KOG1538|consen 46 LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK---LEGILKYSHNDAIQCMSFNPITHQLASCSLS-------- 114 (1081)
T ss_pred ccccccccceEEEEEEccCCceeccCCCceeEEEeccc---ccceeeeccCCeeeEeecCchHHHhhhcchh--------
Confidence 68999999999999999999999999999999999954 33445557788888877 777888887522
Q ss_pred ccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEEEeeCCccc-ccccc
Q 000685 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGR-DIPKQ 160 (1352)
Q Consensus 82 l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl~t~~~~-~i~~~ 160 (1352)
..-+|........ .......+.+++|..||+ +++.|-.+|+|.+--.+++.+ .+...
T Consensus 115 --------------dFglWS~~qK~V~-------K~kss~R~~~CsWtnDGq-ylalG~~nGTIsiRNk~gEek~~I~Rp 172 (1081)
T KOG1538|consen 115 --------------DFGLWSPEQKSVS-------KHKSSSRIICCSWTNDGQ-YLALGMFNGTISIRNKNGEEKVKIERP 172 (1081)
T ss_pred --------------hccccChhhhhHH-------hhhhheeEEEeeecCCCc-EEEEeccCceEEeecCCCCcceEEeCC
Confidence 2335655443221 112245688999999997 999999999997743344322 33334
Q ss_pred ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEE
Q 000685 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240 (1352)
Q Consensus 161 ~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVr 240 (1352)
.+.+.+|.+++|.|.+.-.....+++.....++.++.+. |+.+.+-. .-.-.-.|+. +-++|.+++.|+.|+.++
T Consensus 173 gg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r-~L~FdP~Cis---Yf~NGEy~LiGGsdk~L~ 247 (1081)
T KOG1538|consen 173 GGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDR-ALNFDPCCIS---YFTNGEYILLGGSDKQLS 247 (1081)
T ss_pred CCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccc-cCCCCchhhe---eccCCcEEEEccCCCceE
Confidence 556889999999875432234578888888888888875 44443222 2334456776 568999999999999999
Q ss_pred EEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECC
Q 000685 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV 296 (1352)
Q Consensus 241 VWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~ 296 (1352)
+|.-+ |-.+.+ +...+.+|+.++.+| ++.+.+.|+.||+|--|++-
T Consensus 248 ~fTR~-GvrLGT------vg~~D~WIWtV~~~P---NsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 248 LFTRD-GVRLGT------VGEQDSWIWTVQAKP---NSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EEeec-CeEEee------ccccceeEEEEEEcc---CCceEEEEEccCeeehhhhH
Confidence 99754 433333 444678899999999 89999999999999999875
No 128
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.77 E-value=7e-17 Score=175.71 Aligned_cols=267 Identities=13% Similarity=0.152 Sum_probs=190.2
Q ss_pred CCCeeeeeecCCCCeEEEEEecCcEEE-EEeeCC-ccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEE
Q 000685 120 TSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTM-RGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLS 197 (1352)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~D~~I~-wDl~t~-~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWD 197 (1352)
.+.|.+++|||....+++.++.|+.|| |+++.. ... -+....|.++|.|++| +.+|..+++|+.|+.+++||
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~-~ka~~~~~~PvL~v~W-----sddgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV-PKAQQSHDGPVLDVCW-----SDDGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCccc-chhhhccCCCeEEEEE-----ccCCceEEeeccCCceEEEE
Confidence 677999999997766888999999995 577652 322 2345678999999999 88999999999999999999
Q ss_pred CCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCC
Q 000685 198 MISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGG 277 (1352)
Q Consensus 198 l~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~d 277 (1352)
+.+++... +- .|.++|.++.|+ .......|+|||.|.+|+.||.+....+.+ +. -.+.|+++..-
T Consensus 101 L~S~Q~~~-v~-~Hd~pvkt~~wv-~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t------~~-LPeRvYa~Dv~----- 165 (347)
T KOG0647|consen 101 LASGQVSQ-VA-AHDAPVKTCHWV-PGMNYQCLVTGSWDKTLKFWDTRSSNPVAT------LQ-LPERVYAADVL----- 165 (347)
T ss_pred ccCCCeee-ee-ecccceeEEEEe-cCCCcceeEecccccceeecccCCCCeeee------ee-ccceeeehhcc-----
Confidence 99996644 43 799999999986 444567999999999999999998775544 22 34557777764
Q ss_pred CCEEEEEECCCcEEEEECCCCeEE-EEecCCCcccccCCceeEEEeCCCCC-EEEEecCCe--EEeccCCcccccccCcc
Q 000685 278 SPQLITIGADKTLAIWDTVSFKEL-RRIKPVPKLACHSVASWCHPRAPNLD-ILTCVKDSH--IWAIEHPTYSALTRPLC 353 (1352)
Q Consensus 278 g~~LaSgs~DgtV~IWDl~tg~~l-~~~~~~~~l~~hs~~V~svafspdg~-lLS~s~Dg~--IWDi~t~~~~~~~~~l~ 353 (1352)
..+++.+..++.|.+|+++++... ++.. .--.-.++|++..+|.+ .+.|+-+|+ |..++.+..
T Consensus 166 ~pm~vVata~r~i~vynL~n~~te~k~~~-----SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-------- 232 (347)
T KOG0647|consen 166 YPMAVVATAERHIAVYNLENPPTEFKRIE-----SPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-------- 232 (347)
T ss_pred CceeEEEecCCcEEEEEcCCCcchhhhhc-----CcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc--------
Confidence 369999999999999999876432 2211 11122456888888766 567888897 555554311
Q ss_pred ccCCCCCCeEEecCC--------cccEEEEEEecCCCcEEEEEECCCeEEEEecCCCCCCccccCCCCCCCCceEEEEec
Q 000685 354 ELSSLVPPQVLAHHK--------KLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPLPTPSGSRDHSAVYIVE 425 (1352)
Q Consensus 354 ~~~~~~~~~~l~~h~--------~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~i~~l~~~s~s~~~~~~~~~~ 425 (1352)
+.-.+|+.|. --.|++|+|||. ...|+|.+.||++ ..||-..+..+...++..+. -..+.|-.+
T Consensus 233 -----~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~-hgtlvTaGsDGtf-~FWDkdar~kLk~s~~~~qp-Itcc~fn~~ 304 (347)
T KOG0647|consen 233 -----KDNFTFKCHRSTNSVNDDVYAVNSIAFHPV-HGTLVTAGSDGTF-SFWDKDARTKLKTSETHPQP-ITCCSFNRN 304 (347)
T ss_pred -----cCceeEEEeccCCCCCCceEEecceEeecc-cceEEEecCCceE-EEecchhhhhhhccCcCCCc-cceeEecCC
Confidence 1112333332 125888999995 5569999999997 79998877666554443332 122334444
Q ss_pred CeE
Q 000685 426 REL 428 (1352)
Q Consensus 426 ~~l 428 (1352)
+.+
T Consensus 305 G~i 307 (347)
T KOG0647|consen 305 GSI 307 (347)
T ss_pred CCE
Confidence 443
No 129
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.77 E-value=3.1e-17 Score=186.53 Aligned_cols=303 Identities=17% Similarity=0.242 Sum_probs=203.7
Q ss_pred eEEecCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCcccc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHP--WLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEA 81 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~--~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~ 81 (1352)
...++-|..+|++++|||..+ ++++|+..|.|-+||+.+.+..
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d----------------------------------- 223 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD----------------------------------- 223 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc-----------------------------------
Confidence 456678999999999999765 8899999999999998632110
Q ss_pred ccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEE-EeeCCcccccccc
Q 000685 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQ 160 (1352)
Q Consensus 82 l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~w-Dl~t~~~~~i~~~ 160 (1352)
.|+ +.+ ...|...|.++.|+|.+...+.+.+.||++++ |++......+...
T Consensus 224 -----------~d~-v~~----------------f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~ 275 (498)
T KOG4328|consen 224 -----------KDG-VYL----------------FTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSL 275 (498)
T ss_pred -----------cCc-eEE----------------eccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhc
Confidence 011 111 11236678999999988889999999999988 9988766665444
Q ss_pred ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeE-EEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcE
Q 000685 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKL-VRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1352)
Q Consensus 161 ~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~-i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtV 239 (1352)
......+..+.| +.+...++.|..=|...+||.+++.. ...+. -|...|.+++ ..+-...+|+|||.|++.
T Consensus 276 ~~d~~~fs~~d~-----~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~-lh~kKI~sv~--~NP~~p~~laT~s~D~T~ 347 (498)
T KOG4328|consen 276 DTDNIWFSSLDF-----SAESRSVLFGDNVGNFNVIDLRTDGSEYENLR-LHKKKITSVA--LNPVCPWFLATASLDQTA 347 (498)
T ss_pred Cccceeeeeccc-----cCCCccEEEeecccceEEEEeecCCccchhhh-hhhcccceee--cCCCCchheeecccCcce
Confidence 445566777888 56777788888878999999998654 44444 7888999997 255567889999999999
Q ss_pred EEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECC----CCeEEEEecCCCcccccCC
Q 000685 240 ILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV----SFKELRRIKPVPKLACHSV 315 (1352)
Q Consensus 240 rVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~----tg~~l~~~~~~~~l~~hs~ 315 (1352)
+|||++.-..... |......|...|+++.|+|. ++. |+|.+.|..|+|||.. ....+.++.- ....+.--
T Consensus 348 kIWD~R~l~~K~s--p~lst~~HrrsV~sAyFSPs--~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~H-n~~t~Rwl 421 (498)
T KOG4328|consen 348 KIWDLRQLRGKAS--PFLSTLPHRRSVNSAYFSPS--GGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPH-NNRTGRWL 421 (498)
T ss_pred eeeehhhhcCCCC--cceecccccceeeeeEEcCC--CCc-eEeeccCCceEEeecccccccCCccceeec-cCcccccc
Confidence 9999986443222 33445679999999999993 455 9999999999999974 2222222210 00111111
Q ss_pred ceeEEEeCCCCCEEEEecCCe---EEeccCCcccccccCccccCCCCCCeEEecCCcccE-EEEEEecCCCcEEEEEECC
Q 000685 316 ASWCHPRAPNLDILTCVKDSH---IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRV-YCMVAHSLQPHLVATGTNV 391 (1352)
Q Consensus 316 ~V~svafspdg~lLS~s~Dg~---IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V-~~la~sp~~~~lLatGs~D 391 (1352)
......|.|+..++..+.-.+ |+|-..+.. +..+.......| .-..|||.+..+++.|+..
T Consensus 422 T~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~---------------v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~ 486 (498)
T KOG4328|consen 422 TPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQM---------------VCELHDPESSTIPSVNEFHPMRDTLAAGGNSS 486 (498)
T ss_pred cchhheeCCCccEEEEeccCcceeEEcCCCCEE---------------eeeccCccccccccceeecccccceeccCCcc
Confidence 233678999888776554433 566554311 111111111123 2357999644455555555
Q ss_pred CeEEEEec
Q 000685 392 GVIISEFD 399 (1352)
Q Consensus 392 G~IlriWd 399 (1352)
|.| .+|.
T Consensus 487 Gki-~vft 493 (498)
T KOG4328|consen 487 GKI-YVFT 493 (498)
T ss_pred ceE-EEEe
Confidence 665 6774
No 130
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=2.1e-16 Score=164.88 Aligned_cols=251 Identities=17% Similarity=0.209 Sum_probs=185.7
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE-----EEeccCccceE---Eec---cccceeEeccc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIY-----ELKAGGVDQRR---LVG---AKLEKLAEGEL 72 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~-----t~~~~~~~~i~---~vs---~dg~~Lasgs~ 72 (1352)
.+.-+.|.+.|.|.+|||+|.+|+||+.|.+|++.-.....+-. +|. .|.+.++ ++. ..+..|++++
T Consensus 82 ~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~n-mhdgtirdl~fld~~~s~~~il~s~g- 159 (350)
T KOG0641|consen 82 CKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFN-MHDGTIRDLAFLDDPESGGAILASAG- 159 (350)
T ss_pred eeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeee-ecCCceeeeEEecCCCcCceEEEecC-
Confidence 45667899999999999999999999999999997654332211 121 1222222 222 2344555543
Q ss_pred ccCCCccccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeC
Q 000685 73 EHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVT 151 (1352)
Q Consensus 73 d~~g~~l~~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t 151 (1352)
. .|..|.+-|..+++.. ....+| ++-|.++ ++-++ .++++|+.|++| +||+.-
T Consensus 160 -------------a------gdc~iy~tdc~~g~~~----~a~sgh-tghilal-yswn~-~m~~sgsqdktirfwdlrv 213 (350)
T KOG0641|consen 160 -------------A------GDCKIYITDCGRGQGF----HALSGH-TGHILAL-YSWNG-AMFASGSQDKTIRFWDLRV 213 (350)
T ss_pred -------------C------CcceEEEeecCCCCcc----eeecCC-cccEEEE-EEecC-cEEEccCCCceEEEEeeec
Confidence 1 4667777777777665 334454 5555554 23345 399999999999 558876
Q ss_pred CccccccccccC-----CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCC
Q 000685 152 MRGRDIPKQELD-----NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSG 226 (1352)
Q Consensus 152 ~~~~~i~~~~~h-----~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~d 226 (1352)
..+....-...| ...|.+++. .|.|++|++|-.|.+..+||++.++.++.+. .|...|.|+. |+|.
T Consensus 214 ~~~v~~l~~~~~~~glessavaav~v-----dpsgrll~sg~~dssc~lydirg~r~iq~f~-phsadir~vr---fsp~ 284 (350)
T KOG0641|consen 214 NSCVNTLDNDFHDGGLESSAVAAVAV-----DPSGRLLASGHADSSCMLYDIRGGRMIQRFH-PHSADIRCVR---FSPG 284 (350)
T ss_pred cceeeeccCcccCCCcccceeEEEEE-----CCCcceeeeccCCCceEEEEeeCCceeeeeC-CCccceeEEE---eCCC
Confidence 544332222333 357888998 7899999999999999999999999999997 9999999998 8999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECC
Q 000685 227 EALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV 296 (1352)
Q Consensus 227 g~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~ 296 (1352)
..++++||.|..|++-|+. |...+++ +......|.+.+..+.|+| ..--+++.+.|+++.+|-+.
T Consensus 285 a~yllt~syd~~ikltdlq-gdla~el-~~~vv~ehkdk~i~~rwh~---~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 285 AHYLLTCSYDMKIKLTDLQ-GDLAHEL-PIMVVAEHKDKAIQCRWHP---QDFSFISSSADKTATLWALN 349 (350)
T ss_pred ceEEEEecccceEEEeecc-cchhhcC-ceEEEEeccCceEEEEecC---ccceeeeccCcceEEEeccC
Confidence 9999999999999999997 4333332 4455678999999999999 56778999999999999764
No 131
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.76 E-value=6.7e-16 Score=176.82 Aligned_cols=270 Identities=12% Similarity=0.113 Sum_probs=183.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeE-ecccccCCCccccccCCceEEEEEcCCeEEEEE
Q 000685 23 HPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLA-EGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQ 101 (1352)
Q Consensus 23 g~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~La-sgs~d~~g~~l~~l~~g~V~sVaF~Dg~IrlWD 101 (1352)
+..++|++.|+.|++||..+++.+..+..+.......+.++++.++ ++. .++.+++||
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~---------------------~~~~v~~~d 59 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCAS---------------------DSDTIQVID 59 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEEC---------------------CCCeEEEEE
Confidence 3578899999999999999999988887543322234457777653 332 478999999
Q ss_pred cCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccccccCCCCeEEEEEeeccccCC
Q 000685 102 LWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGD 180 (1352)
Q Consensus 102 l~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spd 180 (1352)
..+++... ....+ ..+..++|+|+++.++++++.++.+ +||+.+.+. +.... +...+.++.| +|+
T Consensus 60 ~~~~~~~~----~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~--~~~~~-~~~~~~~~~~-----~~d 125 (300)
T TIGR03866 60 LATGEVIG----TLPSG--PDPELFALHPNGKILYIANEDDNLVTVIDIETRKV--LAEIP-VGVEPEGMAV-----SPD 125 (300)
T ss_pred CCCCcEEE----eccCC--CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE--EeEee-CCCCcceEEE-----CCC
Confidence 99876542 11111 2246788999998555666666766 669877543 22222 2345678999 789
Q ss_pred CCEEEEEECCC-cEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEE-EEeCCCcEEEEeCCCCCccceeccccc
Q 000685 181 VPLVAFGSSDG-VIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLV-SGGSDGLLILWSADHGQDSRELVPKLS 258 (1352)
Q Consensus 181 g~~LasGs~DG-tIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~La-SgS~DGtVrVWDl~tg~~~~~~~~~~~ 258 (1352)
+.++++++.++ .+.+||..+++....+. ......++. +++++++|+ ++..++.|++||+.+++....+....
T Consensus 126 g~~l~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~---~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~- 199 (300)
T TIGR03866 126 GKIVVNTSETTNMAHFIDTKTYEIVDNVL--VDQRPRFAE---FTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEI- 199 (300)
T ss_pred CCEEEEEecCCCeEEEEeCCCCeEEEEEE--cCCCccEEE---ECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecc-
Confidence 99999988775 46778999887766554 223445665 688998875 55569999999999887655421100
Q ss_pred cccccc--ceEEEEeeccCCCCCEE-EEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEE-EE-ec
Q 000685 259 LKAHDG--GVVAVELSRVMGGSPQL-ITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TC-VK 333 (1352)
Q Consensus 259 l~gH~~--~V~slafsp~~~dg~~L-aSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lL-S~-s~ 333 (1352)
...+.. ....++|+| +++++ ++.+.++.|.+||+.+++.+..+ .+...++++.|+|+|..| ++ +.
T Consensus 200 ~~~~~~~~~~~~i~~s~---dg~~~~~~~~~~~~i~v~d~~~~~~~~~~-------~~~~~~~~~~~~~~g~~l~~~~~~ 269 (300)
T TIGR03866 200 PGVHPEAVQPVGIKLTK---DGKTAFVALGPANRVAVVDAKTYEVLDYL-------LVGQRVWQLAFTPDEKYLLTTNGV 269 (300)
T ss_pred cccccccCCccceEECC---CCCEEEEEcCCCCeEEEEECCCCcEEEEE-------EeCCCcceEEECCCCCEEEEEcCC
Confidence 001111 235688998 67764 44556778999999988876553 233467899999999966 43 34
Q ss_pred CCe--EEeccCC
Q 000685 334 DSH--IWAIEHP 343 (1352)
Q Consensus 334 Dg~--IWDi~t~ 343 (1352)
++. +||+.++
T Consensus 270 ~~~i~v~d~~~~ 281 (300)
T TIGR03866 270 SNDVSVIDVAAL 281 (300)
T ss_pred CCeEEEEECCCC
Confidence 665 8999865
No 132
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=7.6e-17 Score=196.03 Aligned_cols=269 Identities=13% Similarity=0.147 Sum_probs=206.0
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-cEEEEEeccCccceEEeccccceeEecccccCCCccccccCCc
Q 000685 8 RPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHR-QVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGS 86 (1352)
Q Consensus 8 ~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg-~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~ 86 (1352)
.+|+.+-+.|+|.|+|.+|.|++.||.|++|+..+- +.-.++.. +...+.+++....++++++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~-~g~~v~~ia~~s~~f~~~s--------------- 73 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI-SGELVSSIACYSNHFLTGS--------------- 73 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc-cCceeEEEeecccceEEee---------------
Confidence 479999999999999999999999999999997654 22222221 2344555555555666665
Q ss_pred eEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEE-EeeCCccccccccccCCC
Q 000685 87 VKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDNK 165 (1352)
Q Consensus 87 V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~w-Dl~t~~~~~i~~~~~h~~ 165 (1352)
.+++|.+|.+..++. ........-++++++|+.+|+ +++.|++|-.|.+ +..+.. ......+|..
T Consensus 74 ------~~~tv~~y~fps~~~-----~~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s--~~~~lrgh~a 139 (933)
T KOG1274|consen 74 ------EQNTVLRYKFPSGEE-----DTILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSS--QEKVLRGHDA 139 (933)
T ss_pred ------ccceEEEeeCCCCCc-----cceeeeeeccceEEEEecCCc-EEEeecCceeEEEEeccccc--hheeecccCC
Confidence 678899988887754 334445577899999999998 9999999998855 766653 3456789999
Q ss_pred CeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEec-----C-C-CCCeeEEEEeeeCCCCCEEEEEeCCCc
Q 000685 166 SLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTG-----G-H-KGSISCLMTFMASSGEALLVSGGSDGL 238 (1352)
Q Consensus 166 ~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~-----g-H-~~~V~slawf~~s~dg~~LaSgS~DGt 238 (1352)
+|.++.| +|++++|++.+.||+|+|||+.++.+..++.. . - ...+..++ ++|++..|+..+.|+.
T Consensus 140 pVl~l~~-----~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~a---W~Pk~g~la~~~~d~~ 211 (933)
T KOG1274|consen 140 PVLQLSY-----DPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLA---WHPKGGTLAVPPVDNT 211 (933)
T ss_pred ceeeeeE-----cCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeee---ecCCCCeEEeeccCCe
Confidence 9999999 67899999999999999999999877666531 1 1 22334444 6899888888899999
Q ss_pred EEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCcee
Q 000685 239 LILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASW 318 (1352)
Q Consensus 239 VrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~ 318 (1352)
|++|+..++.....+. ...|...+..+.|+| +|.||++++.||.|.|||.++... ......|+
T Consensus 212 Vkvy~r~~we~~f~Lr----~~~~ss~~~~~~wsP---nG~YiAAs~~~g~I~vWnv~t~~~----------~~~~~~Vc 274 (933)
T KOG1274|consen 212 VKVYSRKGWELQFKLR----DKLSSSKFSDLQWSP---NGKYIAASTLDGQILVWNVDTHER----------HEFKRAVC 274 (933)
T ss_pred EEEEccCCceeheeec----ccccccceEEEEEcC---CCcEEeeeccCCcEEEEecccchh----------ccccceeE
Confidence 9999999887655432 234555699999999 799999999999999999987211 22235788
Q ss_pred EEEeCCCCCEEEE
Q 000685 319 CHPRAPNLDILTC 331 (1352)
Q Consensus 319 svafspdg~lLS~ 331 (1352)
+++|.|+..-++.
T Consensus 275 ~~aw~p~~n~it~ 287 (933)
T KOG1274|consen 275 CEAWKPNANAITL 287 (933)
T ss_pred EEecCCCCCeeEE
Confidence 9999999876654
No 133
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.76 E-value=5.3e-16 Score=177.62 Aligned_cols=264 Identities=17% Similarity=0.150 Sum_probs=181.8
Q ss_pred eEEecCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWL-VTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAM 82 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~L-aTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l 82 (1352)
++.+.+|. .+.+++|+|++..+ ++++.++.|++||..+++.+..+..++......+.++++.++....
T Consensus 24 ~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~---------- 92 (300)
T TIGR03866 24 TRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANE---------- 92 (300)
T ss_pred EEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcC----------
Confidence 45566554 47889999999976 5677889999999999998887765443333445577776654321
Q ss_pred cCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCc-EE-EEEeeCCcccccccc
Q 000685 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNK-AI-FLDLVTMRGRDIPKQ 160 (1352)
Q Consensus 83 ~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~-~I-~wDl~t~~~~~i~~~ 160 (1352)
.++.+++||+.+.+.+. .. .. ...+.+++|+|+++ +++++..++ .+ .||..+++... .
T Consensus 93 ----------~~~~l~~~d~~~~~~~~----~~-~~-~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~d~~~~~~~~--~- 152 (300)
T TIGR03866 93 ----------DDNLVTVIDIETRKVLA----EI-PV-GVEPEGMAVSPDGK-IVVNTSETTNMAHFIDTKTYEIVD--N- 152 (300)
T ss_pred ----------CCCeEEEEECCCCeEEe----Ee-eC-CCCcceEEECCCCC-EEEEEecCCCeEEEEeCCCCeEEE--E-
Confidence 47899999998875542 11 11 23467899999998 666666554 44 44776654321 1
Q ss_pred ccCCCCeEEEEEeeccccCCCCEEEEE-ECCCcEEEEECCCCeEEEEEecCC-----CCCe--eEEEEeeeCCCCCEEEE
Q 000685 161 ELDNKSLVCMEFLSRSAVGDVPLVAFG-SSDGVIRVLSMISWKLVRRYTGGH-----KGSI--SCLMTFMASSGEALLVS 232 (1352)
Q Consensus 161 ~~h~~~V~~vaf~P~s~Spdg~~LasG-s~DGtIrIWDl~t~~~i~~l~~gH-----~~~V--~slawf~~s~dg~~LaS 232 (1352)
......+.++.| ++++++++++ ..++.|++||+++++.+..+. .+ ...+ ..+. ++++++.++.
T Consensus 153 ~~~~~~~~~~~~-----s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~i~---~s~dg~~~~~ 223 (300)
T TIGR03866 153 VLVDQRPRFAEF-----TADGKELWVSSEIGGTVSVIDVATRKVIKKIT-FEIPGVHPEAVQPVGIK---LTKDGKTAFV 223 (300)
T ss_pred EEcCCCccEEEE-----CCCCCEEEEEcCCCCEEEEEEcCcceeeeeee-ecccccccccCCccceE---ECCCCCEEEE
Confidence 122345678889 7789888554 469999999999988877664 22 1222 2343 7899987544
Q ss_pred -EeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEE-ECCCcEEEEECCCCeEEEEecCCCcc
Q 000685 233 -GGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITI-GADKTLAIWDTVSFKELRRIKPVPKL 310 (1352)
Q Consensus 233 -gS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSg-s~DgtV~IWDl~tg~~l~~~~~~~~l 310 (1352)
.+.++.|.+||+.+++.... ..+...+.+++|+| ++.+|+++ +.++.|++||+.+++++.++.
T Consensus 224 ~~~~~~~i~v~d~~~~~~~~~-------~~~~~~~~~~~~~~---~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~----- 288 (300)
T TIGR03866 224 ALGPANRVAVVDAKTYEVLDY-------LLVGQRVWQLAFTP---DEKYLLTTNGVSNDVSVIDVAALKVIKSIK----- 288 (300)
T ss_pred EcCCCCeEEEEECCCCcEEEE-------EEeCCCcceEEECC---CCCEEEEEcCCCCeEEEEECCCCcEEEEEE-----
Confidence 45677899999988765432 12445789999999 78888776 569999999999999988852
Q ss_pred cccCCceeEEEeCC
Q 000685 311 ACHSVASWCHPRAP 324 (1352)
Q Consensus 311 ~~hs~~V~svafsp 324 (1352)
. ....+.++++|
T Consensus 289 -~-~~~~~~~~~~~ 300 (300)
T TIGR03866 289 -V-GRLPWGVVVRP 300 (300)
T ss_pred -c-ccccceeEeCC
Confidence 2 24446777664
No 134
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=4.9e-17 Score=177.79 Aligned_cols=218 Identities=22% Similarity=0.305 Sum_probs=164.7
Q ss_pred ccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCC--CCEEEEEe
Q 000685 157 IPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSG--EALLVSGG 234 (1352)
Q Consensus 157 i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~d--g~~LaSgS 234 (1352)
+..+..|...|+|++. +++++++|+.|-+|+|||++....+..+. .|.+.|+++. |.+. ...|++|+
T Consensus 36 lF~~~aH~~sitavAV-------s~~~~aSGssDetI~IYDm~k~~qlg~ll-~HagsitaL~---F~~~~S~shLlS~s 104 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAV-------SGPYVASGSSDETIHIYDMRKRKQLGILL-SHAGSITALK---FYPPLSKSHLLSGS 104 (362)
T ss_pred cccccccccceeEEEe-------cceeEeccCCCCcEEEEeccchhhhccee-ccccceEEEE---ecCCcchhheeeec
Confidence 4455778999999999 79999999999999999999988888887 8999999998 3333 34899999
Q ss_pred CCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccC
Q 000685 235 SDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHS 314 (1352)
Q Consensus 235 ~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs 314 (1352)
.||.|.+|+.....++.. +++|.+.|+.++.|| .+++-++.+.|+.+++||+-+|+.-.... + .|.
T Consensus 105 dDG~i~iw~~~~W~~~~s------lK~H~~~Vt~lsiHP---S~KLALsVg~D~~lr~WNLV~Gr~a~v~~----L-~~~ 170 (362)
T KOG0294|consen 105 DDGHIIIWRVGSWELLKS------LKAHKGQVTDLSIHP---SGKLALSVGGDQVLRTWNLVRGRVAFVLN----L-KNK 170 (362)
T ss_pred CCCcEEEEEcCCeEEeee------ecccccccceeEecC---CCceEEEEcCCceeeeehhhcCccceeec----c-CCc
Confidence 999999999998876665 799999999999999 78999999999999999999887443321 1 111
Q ss_pred CceeEEEeCCCCCEE-EEecCCe-EEeccCCccc-cc------------------------ccCccccCCCCCCeEEecC
Q 000685 315 VASWCHPRAPNLDIL-TCVKDSH-IWAIEHPTYS-AL------------------------TRPLCELSSLVPPQVLAHH 367 (1352)
Q Consensus 315 ~~V~svafspdg~lL-S~s~Dg~-IWDi~t~~~~-~~------------------------~~~l~~~~~~~~~~~l~~h 367 (1352)
. ..+.|+|.|..+ .++.++- ||.+.+.... .. ....++.....+...+..|
T Consensus 171 a--t~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH 248 (362)
T KOG0294|consen 171 A--TLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAH 248 (362)
T ss_pred c--eeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecc
Confidence 1 237777777733 4455543 5655432110 00 0112223335667778888
Q ss_pred CcccEEEEEEe-cCCCcEEEEEECCCeEEEEecCCCC
Q 000685 368 KKLRVYCMVAH-SLQPHLVATGTNVGVIISEFDPRSL 403 (1352)
Q Consensus 368 ~~~~V~~la~s-p~~~~lLatGs~DG~IlriWd~~~~ 403 (1352)
.. +|.++.+- ...+.+|++.+.||.| ++||.+..
T Consensus 249 ~~-RVK~i~~~~~~~~~~lvTaSSDG~I-~vWd~~~~ 283 (362)
T KOG0294|consen 249 EN-RVKDIASYTNPEHEYLVTASSDGFI-KVWDIDME 283 (362)
T ss_pred hh-heeeeEEEecCCceEEEEeccCceE-EEEEcccc
Confidence 88 99999843 3367899999999998 89998754
No 135
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.6e-18 Score=205.19 Aligned_cols=210 Identities=20% Similarity=0.280 Sum_probs=175.2
Q ss_pred CCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccccccCCCCeEEEEE
Q 000685 94 DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEF 172 (1352)
Q Consensus 94 Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~h~~~V~~vaf 172 (1352)
|..+-+|.+....++ ..+.+ |...|.++.|+++.. +|+.|+.+|+| +||+...+ .+.++.+|...+..+.|
T Consensus 49 ~~k~~L~~i~kp~~i----~S~~~-hespIeSl~f~~~E~-LlaagsasgtiK~wDleeAk--~vrtLtgh~~~~~sv~f 120 (825)
T KOG0267|consen 49 DEKVNLWAIGKPNAI----TSLTG-HESPIESLTFDTSER-LLAAGSASGTIKVWDLEEAK--IVRTLTGHLLNITSVDF 120 (825)
T ss_pred ceeeccccccCCchh----heeec-cCCcceeeecCcchh-hhcccccCCceeeeehhhhh--hhhhhhccccCcceeee
Confidence 444555655554443 12233 388899999999886 99999999999 77998765 35678899999999999
Q ss_pred eeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccce
Q 000685 173 LSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRE 252 (1352)
Q Consensus 173 ~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~ 252 (1352)
+|-+.+.+.|+.|+.+++||.+...|...+. +|...|.++. ++|+|.++++|+.|.+|+|||+..|+.+.+
T Consensus 121 -----~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~-s~~~vv~~l~---lsP~Gr~v~~g~ed~tvki~d~~agk~~~e 191 (825)
T KOG0267|consen 121 -----HPYGEFFASGSTDTDLKIWDIRKKGCSHTYK-SHTRVVDVLR---LSPDGRWVASGGEDNTVKIWDLTAGKLSKE 191 (825)
T ss_pred -----ccceEEeccccccccceehhhhccCceeeec-CCcceeEEEe---ecCCCceeeccCCcceeeeecccccccccc
Confidence 5679999999999999999999888988887 7999999997 899999999999999999999999987766
Q ss_pred ecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEEEEe
Q 000685 253 LVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCV 332 (1352)
Q Consensus 253 ~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lLS~s 332 (1352)
+.+|++.|.++.||| ..-++.+||.|++|++||+++.+.+-. .......|.+..|+|++..+.+|
T Consensus 192 ------f~~~e~~v~sle~hp---~e~Lla~Gs~d~tv~f~dletfe~I~s------~~~~~~~v~~~~fn~~~~~~~~G 256 (825)
T KOG0267|consen 192 ------FKSHEGKVQSLEFHP---LEVLLAPGSSDRTVRFWDLETFEVISS------GKPETDGVRSLAFNPDGKIVLSG 256 (825)
T ss_pred ------cccccccccccccCc---hhhhhccCCCCceeeeeccceeEEeec------cCCccCCceeeeecCCceeeecC
Confidence 689999999999999 678899999999999999998776665 33446789999999999987665
Q ss_pred cCC
Q 000685 333 KDS 335 (1352)
Q Consensus 333 ~Dg 335 (1352)
...
T Consensus 257 ~q~ 259 (825)
T KOG0267|consen 257 EQI 259 (825)
T ss_pred chh
Confidence 443
No 136
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.74 E-value=8.1e-17 Score=184.71 Aligned_cols=256 Identities=15% Similarity=0.172 Sum_probs=187.3
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCCceEE
Q 000685 10 TNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQ 89 (1352)
Q Consensus 10 Hs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~s 89 (1352)
.+..|+++.|+++|..|++.+.....+|+|- .|..+.++..+
T Consensus 213 E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DR-dG~~~~e~~KG------------------------------------- 254 (641)
T KOG0772|consen 213 ETHQINSLQYSVTGDQILVVSGSAQAKLLDR-DGFEIVEFSKG------------------------------------- 254 (641)
T ss_pred cccccceeeecCCCCeEEEEecCcceeEEcc-CCceeeeeecc-------------------------------------
Confidence 3468999999999999999989999999994 45444444312
Q ss_pred EEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccc-ccccc---ccCC
Q 000685 90 VNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGR-DIPKQ---ELDN 164 (1352)
Q Consensus 90 VaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~-~i~~~---~~h~ 164 (1352)
|..|+ |+ ....+| ...++|.+|+|+.+..+++|+.|+.+ +||+...+.. .+... .+..
T Consensus 255 ----DQYI~--Dm----------~nTKGH-ia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 255 ----DQYIR--DM----------YNTKGH-IAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred ----chhhh--hh----------hccCCc-eeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 22222 11 122333 67799999999998899999999999 5677654321 11111 2234
Q ss_pred CCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCC--eEEEEEecCCCC--CeeEEEEeeeCCCCCEEEEEeCCCcEE
Q 000685 165 KSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW--KLVRRYTGGHKG--SISCLMTFMASSGEALLVSGGSDGLLI 240 (1352)
Q Consensus 165 ~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~--~~i~~l~~gH~~--~V~slawf~~s~dg~~LaSgS~DGtVr 240 (1352)
-.++.++| ++++++|++|+.||+|.+|+..+. +....+..+|.. .|+||. |+.+|++|+|-+.|++++
T Consensus 318 v~~tsC~~-----nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~---FS~dg~~LlSRg~D~tLK 389 (641)
T KOG0772|consen 318 VPVTSCAW-----NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSIS---FSYDGNYLLSRGFDDTLK 389 (641)
T ss_pred cCceeeec-----CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEE---eccccchhhhccCCCcee
Confidence 57888999 789999999999999999998654 333444558987 999997 899999999999999999
Q ss_pred EEeCCCCC-ccceecccccccccccceEEEEeeccCCCCCEEEEEEC------CCcEEEEECCCCeEEEEecCCCccccc
Q 000685 241 LWSADHGQ-DSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA------DKTLAIWDTVSFKELRRIKPVPKLACH 313 (1352)
Q Consensus 241 VWDl~tg~-~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~------DgtV~IWDl~tg~~l~~~~~~~~l~~h 313 (1352)
+||+++-+ ++..+.... ....-+.++|+| +.++|++|.. -|++.+||..+...++++ ...
T Consensus 390 vWDLrq~kkpL~~~tgL~----t~~~~tdc~FSP---d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki------~i~ 456 (641)
T KOG0772|consen 390 VWDLRQFKKPLNVRTGLP----TPFPGTDCCFSP---DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI------DIS 456 (641)
T ss_pred eeeccccccchhhhcCCC----ccCCCCccccCC---CceEEEecccccCCCCCceEEEEeccceeeEEEe------cCC
Confidence 99999754 232211111 122356789999 7889998874 578999999988888874 333
Q ss_pred CCceeEEEeCCC-CCEEEEecCCe---EEecc
Q 000685 314 SVASWCHPRAPN-LDILTCVKDSH---IWAIE 341 (1352)
Q Consensus 314 s~~V~svafspd-g~lLS~s~Dg~---IWDi~ 341 (1352)
+..|..+.|||. +++++++.||. +||-+
T Consensus 457 ~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 457 TASVVRCLWHPKLNQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred CceEEEEeecchhhheeeecCCCceEEEECcc
Confidence 667789999998 45778889996 45554
No 137
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.74 E-value=1.9e-16 Score=171.22 Aligned_cols=309 Identities=18% Similarity=0.246 Sum_probs=208.6
Q ss_pred EecCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccC
Q 000685 6 AFRPTNDKIVKIQLHPT-HPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1352)
Q Consensus 6 ~L~gHs~~V~~lafSPd-g~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~ 84 (1352)
.-+.|.+.|+++...+. |+++++|+.||.|.|||++.-..... . .+..
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~---s-------------~li~--------------- 86 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEA---S-------------GLIA--------------- 86 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhh---c-------------ccee---------------
Confidence 34679999999999985 78999999999999999875321100 0 0000
Q ss_pred CceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccccccC
Q 000685 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELD 163 (1352)
Q Consensus 85 g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~h 163 (1352)
..+ |+. .......|...|.++.|-|-...++.+++.|+.+ +||.++.+.... ..-
T Consensus 87 ----------k~~---------c~v--~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~---F~m 142 (397)
T KOG4283|consen 87 ----------KHK---------CIV--AKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVD---FKM 142 (397)
T ss_pred ----------hee---------eec--cccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEE---eec
Confidence 000 100 0111222366788888888666699999999999 789888654322 223
Q ss_pred CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEe
Q 000685 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243 (1352)
Q Consensus 164 ~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWD 243 (1352)
.+.|.+-+++|- +....+|++|..|-.|++.|+.+|.+...+. ||.+.|.++.|. +...-.|++|+.||.||+||
T Consensus 143 e~~VYshamSp~--a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls-GHr~~vlaV~Ws--p~~e~vLatgsaDg~irlWD 217 (397)
T KOG4283|consen 143 EGKVYSHAMSPM--AMSHCLIAAGTRDVQVRLCDIASGSFSHTLS-GHRDGVLAVEWS--PSSEWVLATGSADGAIRLWD 217 (397)
T ss_pred CceeehhhcChh--hhcceEEEEecCCCcEEEEeccCCcceeeec-cccCceEEEEec--cCceeEEEecCCCceEEEEE
Confidence 467777778653 2245789999999999999999999999987 999999999973 55566789999999999999
Q ss_pred CCCC-Ccccee-------cccc-cccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEE-EEecCCCccccc
Q 000685 244 ADHG-QDSREL-------VPKL-SLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKEL-RRIKPVPKLACH 313 (1352)
Q Consensus 244 l~tg-~~~~~~-------~~~~-~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l-~~~~~~~~l~~h 313 (1352)
++.. .+...+ .|.. +-..|.+.|+.++|.. ++.++++++.|.++++|+..+|+.. +.+.++ .|
T Consensus 218 iRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS---d~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~----~~ 290 (397)
T KOG4283|consen 218 IRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS---DARYLASCGTDDRIRVWNMESGRNTLREFGPI----IH 290 (397)
T ss_pred eecccceeEEeecccCccCccccccccccceeeeeeecc---cchhhhhccCccceEEeecccCcccccccccc----cc
Confidence 9864 222111 1111 2357889999999998 8999999999999999999988742 222111 12
Q ss_pred CCceeEEEe---CCCCCEEE-EecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEE
Q 000685 314 SVASWCHPR---APNLDILT-CVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVAT 387 (1352)
Q Consensus 314 s~~V~svaf---spdg~lLS-~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLat 387 (1352)
...+ ...+ +-+...++ --.|+. +..+-.+ ..+..+..|.+ +|.|..+.| +=....+
T Consensus 291 n~~~-~~~~~~~~~~s~vfv~~p~~~~lall~~~sg---------------s~ir~l~~h~k-~i~c~~~~~-~fq~~~t 352 (397)
T KOG4283|consen 291 NQTT-SFAVHIQSMDSDVFVLFPNDGSLALLNLLEG---------------SFVRRLSTHLK-RINCAAYRP-DFEQCFT 352 (397)
T ss_pred cccc-cceEEEeecccceEEEEecCCeEEEEEccCc---------------eEEEeeecccc-eeeEEeecC-chhhhhc
Confidence 2111 1111 12222221 112233 3333322 22455667755 899999998 5666899
Q ss_pred EECCCeEEEEecC
Q 000685 388 GTNVGVIISEFDP 400 (1352)
Q Consensus 388 Gs~DG~IlriWd~ 400 (1352)
|..|+.| ..|-+
T Consensus 353 g~~d~ni-~~w~p 364 (397)
T KOG4283|consen 353 GDMNGNI-YMWSP 364 (397)
T ss_pred cccCCcc-ccccc
Confidence 9999998 47754
No 138
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.73 E-value=6.1e-17 Score=180.27 Aligned_cols=222 Identities=22% Similarity=0.291 Sum_probs=160.8
Q ss_pred cccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEE---EEEecCCCCCeeEEEEeeeCCCCCEEEE
Q 000685 156 DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLV---RRYTGGHKGSISCLMTFMASSGEALLVS 232 (1352)
Q Consensus 156 ~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i---~~l~~gH~~~V~slawf~~s~dg~~LaS 232 (1352)
.+.++..|...=..++|+| ...| .+++|..-+.|++|...++... .-+. +|+..|-.++| .+.....|+|
T Consensus 203 Pl~t~~ghk~EGy~LdWSp---~~~g-~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~-gH~~SVEDLqW--SptE~~vfaS 275 (440)
T KOG0302|consen 203 PLFTFNGHKGEGYGLDWSP---IKTG-RLLSGDCVKGIHLWEPSTGSWKVDQRPFT-GHTKSVEDLQW--SPTEDGVFAS 275 (440)
T ss_pred ceEEecccCccceeeeccc---cccc-ccccCccccceEeeeeccCceeecCcccc-ccccchhhhcc--CCccCceEEe
Confidence 4555677888888999955 2233 4788888889999999876443 2334 89999999996 3456779999
Q ss_pred EeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccc
Q 000685 233 GGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLAC 312 (1352)
Q Consensus 233 gS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~ 312 (1352)
||.||+|+|||++.+..... ...+.|.+-|+-|.|+. ...+|++|++||+++|||++..+.- .++..+..
T Consensus 276 cS~DgsIrIWDiRs~~~~~~----~~~kAh~sDVNVISWnr---~~~lLasG~DdGt~~iwDLR~~~~~---~pVA~fk~ 345 (440)
T KOG0302|consen 276 CSCDGSIRIWDIRSGPKKAA----VSTKAHNSDVNVISWNR---REPLLASGGDDGTLSIWDLRQFKSG---QPVATFKY 345 (440)
T ss_pred eecCceEEEEEecCCCccce----eEeeccCCceeeEEccC---CcceeeecCCCceEEEEEhhhccCC---CcceeEEe
Confidence 99999999999998843221 22488999999999998 5669999999999999999864422 23444788
Q ss_pred cCCceeEEEeCCCCC--EEEEecCCe--EEeccCCccc--ccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEE
Q 000685 313 HSVASWCHPRAPNLD--ILTCVKDSH--IWAIEHPTYS--ALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVA 386 (1352)
Q Consensus 313 hs~~V~svafspdg~--lLS~s~Dg~--IWDi~t~~~~--~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLa 386 (1352)
|..+|+++.|+|... ++++|.|.. |||+....-. ........+....+...|-..+...+..+.||+.-+.+++
T Consensus 346 Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lv 425 (440)
T KOG0302|consen 346 HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLV 425 (440)
T ss_pred ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEE
Confidence 999999999999744 557788874 8999743210 0011112222223333333335457899999998888999
Q ss_pred EEECCCeE
Q 000685 387 TGTNVGVI 394 (1352)
Q Consensus 387 tGs~DG~I 394 (1352)
+.+.||.-
T Consensus 426 sTa~dGfn 433 (440)
T KOG0302|consen 426 STAIDGFN 433 (440)
T ss_pred Eeccccee
Confidence 99999984
No 139
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.73 E-value=2.6e-15 Score=172.10 Aligned_cols=352 Identities=16% Similarity=0.197 Sum_probs=237.6
Q ss_pred EEecCCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec--cccceeEecccccC------
Q 000685 5 KAFRPTN-DKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHK------ 75 (1352)
Q Consensus 5 ~~L~gHs-~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~------ 75 (1352)
-.|+++. .-|.|++|.++|. ++||+.+|+|.||+..+.+..+... -|..++++++ .+|..|. |+.|..
T Consensus 239 ~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~ 315 (626)
T KOG2106|consen 239 GIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDD 315 (626)
T ss_pred eccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCccEee-cCccceEEeccc
Confidence 3455544 4699999999986 7799999999999998888887777 6778888877 5666555 665542
Q ss_pred ----CCcccccc-CCceEEEEEcCCeEEEEEcCCccccc-----cccccccccCCCCeeeeeecCCCCeEEEEEecCcEE
Q 000685 76 ----GKPTEAMR-GGSVKQVNFYDDDVRFWQLWRNRAAA-----AEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI 145 (1352)
Q Consensus 76 ----g~~l~~l~-~g~V~sVaF~Dg~IrlWDl~t~~~i~-----~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I 145 (1352)
.+.+.+-. -|.|+.|+-..+.+.+=.. .+..+. .......+| ....+.++.+|+.+ .+++++.|+.+
T Consensus 316 ~y~k~r~~elPe~~G~iRtv~e~~~di~vGTt-rN~iL~Gt~~~~f~~~v~gh-~delwgla~hps~~-q~~T~gqdk~v 392 (626)
T KOG2106|consen 316 NYRKLRETELPEQFGPIRTVAEGKGDILVGTT-RNFILQGTLENGFTLTVQGH-GDELWGLATHPSKN-QLLTCGQDKHV 392 (626)
T ss_pred cccccccccCchhcCCeeEEecCCCcEEEeec-cceEEEeeecCCceEEEEec-ccceeeEEcCCChh-heeeccCcceE
Confidence 01111111 1566665553333222111 111110 111223344 66889999999887 88899999988
Q ss_pred -EEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeC
Q 000685 146 -FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMAS 224 (1352)
Q Consensus 146 -~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s 224 (1352)
.|+ ..+ +...+.-.++..|+.|| |.| .++.|+..|...+.|.++...+..-. . +.++++++ ++
T Consensus 393 ~lW~--~~k---~~wt~~~~d~~~~~~fh-----psg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d-~~~ls~v~---ys 456 (626)
T KOG2106|consen 393 RLWN--DHK---LEWTKIIEDPAECADFH-----PSG-VVAVGTATGRWFVLDTETQDLVTIHT-D-NEQLSVVR---YS 456 (626)
T ss_pred EEcc--CCc---eeEEEEecCceeEeecc-----Ccc-eEEEeeccceEEEEecccceeEEEEe-c-CCceEEEE---Ec
Confidence 555 211 22234456789999995 467 99999999999999999866655443 3 78999997 89
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEe
Q 000685 225 SGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRI 304 (1352)
Q Consensus 225 ~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~ 304 (1352)
|+|.+|+.||.|+.|.+|.+..+...... .-+.|..+|+.+.|++ |+++|.+-+.|-.|..|.-...+.....
T Consensus 457 p~G~~lAvgs~d~~iyiy~Vs~~g~~y~r----~~k~~gs~ithLDwS~---Ds~~~~~~S~d~eiLyW~~~~~~~~ts~ 529 (626)
T KOG2106|consen 457 PDGAFLAVGSHDNHIYIYRVSANGRKYSR----VGKCSGSPITHLDWSS---DSQFLVSNSGDYEILYWKPSECKQITSV 529 (626)
T ss_pred CCCCEEEEecCCCeEEEEEECCCCcEEEE----eeeecCceeEEeeecC---CCceEEeccCceEEEEEccccCccccee
Confidence 99999999999999999999876533221 1133448899999999 8999999999999999954433322221
Q ss_pred cCCCc------------ccccCCceeEEEeCCCCCEEEEecC-Ce--EEeccCCcccccccCccccCCCCCCeEEecCCc
Q 000685 305 KPVPK------------LACHSVASWCHPRAPNLDILTCVKD-SH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKK 369 (1352)
Q Consensus 305 ~~~~~------------l~~hs~~V~svafspdg~lLS~s~D-g~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~ 369 (1352)
+.+.. ...|...+..++.+.+.++++++.| |+ ||...-. +...+...+.+|+.
T Consensus 530 kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~------------s~rA~~he~~ghs~ 597 (626)
T KOG2106|consen 530 KDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCS------------SPRAPSHEYGGHSS 597 (626)
T ss_pred cceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccC------------CCcccceeeccccc
Confidence 11111 1334556667777777888877655 44 4543311 11233456777877
Q ss_pred ccEEEEEEecCCCcEEEEEECCCeEEEEecC
Q 000685 370 LRVYCMVAHSLQPHLVATGTNVGVIISEFDP 400 (1352)
Q Consensus 370 ~~V~~la~sp~~~~lLatGs~DG~IlriWd~ 400 (1352)
.|.+++|.-.+..++.+| .|..| ..|++
T Consensus 598 -~vt~V~Fl~~d~~li~tg-~D~Si-~qW~l 625 (626)
T KOG2106|consen 598 -HVTNVAFLCKDSHLISTG-KDTSI-MQWRL 625 (626)
T ss_pred -eeEEEEEeeCCceEEecC-CCceE-EEEEe
Confidence 999999999777766667 88887 48864
No 140
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=4.5e-18 Score=201.52 Aligned_cols=245 Identities=20% Similarity=0.247 Sum_probs=198.6
Q ss_pred CCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccccccCCCCeEEEEE
Q 000685 94 DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEF 172 (1352)
Q Consensus 94 Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~h~~~V~~vaf 172 (1352)
+..+++||.+...+ |...+.++..-..++ ++++|+.|..+ .|..... ..+..+.+|..+|.|+.|
T Consensus 13 ~t~Lr~~~~~~~~~-----------hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp--~~i~S~~~hespIeSl~f 78 (825)
T KOG0267|consen 13 ATKLRVWDTREFVA-----------HSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKP--NAITSLTGHESPIESLTF 78 (825)
T ss_pred eeccccccchhhhh-----------hhhhhceeeeeccce-eeccCCCceeeccccccCC--chhheeeccCCcceeeec
Confidence 44567787765433 256677777655555 89999999888 6644332 334457899999999999
Q ss_pred eeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccce
Q 000685 173 LSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRE 252 (1352)
Q Consensus 173 ~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~ 252 (1352)
+.+..+|+.|+.+|+|++||++..+.++++. ||...+.++. |+|-+.++++|+.|+.+++||++...|.+.
T Consensus 79 -----~~~E~LlaagsasgtiK~wDleeAk~vrtLt-gh~~~~~sv~---f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~ 149 (825)
T KOG0267|consen 79 -----DTSERLLAAGSASGTIKVWDLEEAKIVRTLT-GHLLNITSVD---FHPYGEFFASGSTDTDLKIWDIRKKGCSHT 149 (825)
T ss_pred -----CcchhhhcccccCCceeeeehhhhhhhhhhh-ccccCcceee---eccceEEeccccccccceehhhhccCceee
Confidence 6688899999999999999999999999998 9999999997 799999999999999999999997666554
Q ss_pred ecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEE-EE
Q 000685 253 LVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TC 331 (1352)
Q Consensus 253 ~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lL-S~ 331 (1352)
+.+|...|..+.|+| +|+++++|++|.+++|||...|+.+.. +.+|...+.++.|+|...++ +|
T Consensus 150 ------~~s~~~vv~~l~lsP---~Gr~v~~g~ed~tvki~d~~agk~~~e------f~~~e~~v~sle~hp~e~Lla~G 214 (825)
T KOG0267|consen 150 ------YKSHTRVVDVLRLSP---DGRWVASGGEDNTVKIWDLTAGKLSKE------FKSHEGKVQSLEFHPLEVLLAPG 214 (825)
T ss_pred ------ecCCcceeEEEeecC---CCceeeccCCcceeeeecccccccccc------cccccccccccccCchhhhhccC
Confidence 688999999999999 899999999999999999999998877 57899999999999998877 58
Q ss_pred ecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCe
Q 000685 332 VKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGV 393 (1352)
Q Consensus 332 s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~ 393 (1352)
|.|.+ +||+.+... +....+... .|.|+.|+| ++..+.+|..+..
T Consensus 215 s~d~tv~f~dletfe~---------------I~s~~~~~~-~v~~~~fn~-~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 215 SSDRTVRFWDLETFEV---------------ISSGKPETD-GVRSLAFNP-DGKIVLSGEQISL 261 (825)
T ss_pred CCCceeeeeccceeEE---------------eeccCCccC-CceeeeecC-CceeeecCchhhh
Confidence 88885 899985421 111222223 799999999 5777888877665
No 141
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.2e-16 Score=182.68 Aligned_cols=231 Identities=14% Similarity=0.142 Sum_probs=182.9
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCCceEEE
Q 000685 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQV 90 (1352)
Q Consensus 11 s~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~sV 90 (1352)
.+.|.|++-+|+|.||+.|+..|.|.+|.+.+|..+..+..|
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aH-------------------------------------- 122 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAH-------------------------------------- 122 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhh--------------------------------------
Confidence 357999999999999999999999999999998887766422
Q ss_pred EEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEee-------CCcccccccccc
Q 000685 91 NFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLV-------TMRGRDIPKQEL 162 (1352)
Q Consensus 91 aF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~-------t~~~~~i~~~~~ 162 (1352)
-..|+|+.|+.|+. .|++|+.|+.| +|.+. +.....+..+..
T Consensus 123 -----------------------------YQ~ITcL~fs~dgs-~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~ 172 (476)
T KOG0646|consen 123 -----------------------------YQSITCLKFSDDGS-HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSD 172 (476)
T ss_pred -----------------------------ccceeEEEEeCCCc-EEEecCCCccEEEEEEEeecccccCCCccceeeecc
Confidence 44578888888887 88888888877 55321 222334455677
Q ss_pred CCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEE
Q 000685 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1352)
Q Consensus 163 h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVW 242 (1352)
|.-+|+++...+ .+...+|++.|.|.++++||+..+..+.++. ....++++. .+|.++.+..|+.+|.|.+.
T Consensus 173 HtlsITDl~ig~---Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~--fp~si~av~---lDpae~~~yiGt~~G~I~~~ 244 (476)
T KOG0646|consen 173 HTLSITDLQIGS---GGTNARLYTASEDRTIKLWDLSLGVLLLTIT--FPSSIKAVA---LDPAERVVYIGTEEGKIFQN 244 (476)
T ss_pred CcceeEEEEecC---CCccceEEEecCCceEEEEEeccceeeEEEe--cCCcceeEE---EcccccEEEecCCcceEEee
Confidence 888999998843 3345789999999999999999999988874 778899997 89999999999999999998
Q ss_pred eCCCCC--cc----c----eeccccccccccc--ceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcc
Q 000685 243 SADHGQ--DS----R----ELVPKLSLKAHDG--GVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKL 310 (1352)
Q Consensus 243 Dl~tg~--~~----~----~~~~~~~l~gH~~--~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l 310 (1352)
++.... .. + .-.....+.||.+ .|+|++++- |+.+|++|+.||.|+|||+.+.++++++
T Consensus 245 ~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~---DgtlLlSGd~dg~VcvWdi~S~Q~iRtl------ 315 (476)
T KOG0646|consen 245 LLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST---DGTLLLSGDEDGKVCVWDIYSKQCIRTL------ 315 (476)
T ss_pred ehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec---CccEEEeeCCCCCEEEEecchHHHHHHH------
Confidence 876432 10 0 0112345788988 899999998 8999999999999999999999998884
Q ss_pred cccCCceeEEEeCCCC
Q 000685 311 ACHSVASWCHPRAPNL 326 (1352)
Q Consensus 311 ~~hs~~V~svafspdg 326 (1352)
....+.|+.+.+.|-.
T Consensus 316 ~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 316 QTSKGPVTNLQINPLE 331 (476)
T ss_pred hhhccccceeEeeccc
Confidence 3345677778776643
No 142
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.72 E-value=3.1e-17 Score=196.03 Aligned_cols=243 Identities=14% Similarity=0.197 Sum_probs=185.7
Q ss_pred EEEEEEcC-CCCEEEEEeCCCcEEEEECCC---CcEEEEEeccCccceEEec---cccceeEecccccCCCccccccCCc
Q 000685 14 IVKIQLHP-THPWLVTADASDHVSVWNWEH---RQVIYELKAGGVDQRRLVG---AKLEKLAEGELEHKGKPTEAMRGGS 86 (1352)
Q Consensus 14 V~~lafSP-dg~~LaTgs~DG~VrVWDl~t---g~~i~t~~~~~~~~i~~vs---~dg~~Lasgs~d~~g~~l~~l~~g~ 86 (1352)
+..|.|+. +.++|||++.+|.|.+||+.. .+.+..|. .|...+..++ ..-.+|++|+
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~-EH~Rs~~~ldfh~tep~iliSGS--------------- 153 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFN-EHERSANKLDFHSTEPNILISGS--------------- 153 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhh-hhccceeeeeeccCCccEEEecC---------------
Confidence 34566764 356999999999999999976 34444454 4445555554 3455777776
Q ss_pred eEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccccccCCC
Q 000685 87 VKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNK 165 (1352)
Q Consensus 87 V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~h~~ 165 (1352)
.||+|++||++..+.. .+..+. ...|+.|.|+|.....++++.++|.+ .||++..+ ++...+..|.+
T Consensus 154 ------QDg~vK~~DlR~~~S~----~t~~~n-SESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~-r~~~k~~AH~G 221 (839)
T KOG0269|consen 154 ------QDGTVKCWDLRSKKSK----STFRSN-SESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD-RCEKKLTAHNG 221 (839)
T ss_pred ------CCceEEEEeeeccccc----cccccc-chhhhceeeccCCCceEEEecCCceEEEeeccCch-hHHHHhhcccC
Confidence 6999999999988765 233333 66799999999877799999999999 77998764 35566789999
Q ss_pred CeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeC--CCcEEEEe
Q 000685 166 SLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS--DGLLILWS 243 (1352)
Q Consensus 166 ~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~--DGtVrVWD 243 (1352)
+|.|+.| +|++.+|+||+.|++|+|||+.+.+.-....-....+|.+++| -+.....|++++. |-.|+|||
T Consensus 222 pV~c~nw-----hPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkW--RP~~~~hLAtcsmv~dtsV~VWD 294 (839)
T KOG0269|consen 222 PVLCLNW-----HPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKW--RPARSYHLATCSMVVDTSVHVWD 294 (839)
T ss_pred ceEEEee-----cCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeee--ccCccchhhhhhccccceEEEEe
Confidence 9999999 5689999999999999999998654432222135578999997 3445578888875 88899999
Q ss_pred CCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCC
Q 000685 244 ADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSF 298 (1352)
Q Consensus 244 l~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg 298 (1352)
++.. +.|..++..|...++.++|.. .|...+.+++.|++|..-.++++
T Consensus 295 vrRP-----YIP~~t~~eH~~~vt~i~W~~--~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 295 VRRP-----YIPYATFLEHTDSVTGIAWDS--GDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eccc-----cccceeeeccCccccceeccC--CCceeeEeecCccHHHHhhhhcc
Confidence 9865 457778899999999999987 46778899999999876555443
No 143
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=3.4e-15 Score=164.41 Aligned_cols=245 Identities=15% Similarity=0.267 Sum_probs=188.7
Q ss_pred eeEEecCCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCcEEEEEeccCccceEEec--cccceeEecccccCCCc
Q 000685 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADA--SDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKP 78 (1352)
Q Consensus 3 ~l~~L~gHs~~V~~lafSPdg~~LaTgs~--DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~ 78 (1352)
+++++..+.-.|..+.|-.....++.++. |.+||.-++.+.+.++.|. +|...|..++ |.+..+++++
T Consensus 48 ~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~-GH~~~V~sL~~sP~~d~FlS~S------- 119 (311)
T KOG1446|consen 48 QVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFP-GHKKRVNSLSVSPKDDTFLSSS------- 119 (311)
T ss_pred eeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcC-CCCceEEEEEecCCCCeEEecc-------
Confidence 46777888889999999877777777766 8999999999999999998 6667777665 7778888876
Q ss_pred cccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEE-EeeCCccccc
Q 000685 79 TEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDI 157 (1352)
Q Consensus 79 l~~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~w-Dl~t~~~~~i 157 (1352)
.|++||+||++..+|.. ... ...-..++|.|+|- ++|++.....|.+ |++.......
T Consensus 120 --------------~D~tvrLWDlR~~~cqg-----~l~--~~~~pi~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF 177 (311)
T KOG1446|consen 120 --------------LDKTVRLWDLRVKKCQG-----LLN--LSGRPIAAFDPEGL-IFALANGSELIKLYDLRSFDKGPF 177 (311)
T ss_pred --------------cCCeEEeeEecCCCCce-----EEe--cCCCcceeECCCCc-EEEEecCCCeEEEEEecccCCCCc
Confidence 68999999999887752 111 12234578999996 8888887767755 8876543322
Q ss_pred cccc---cCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCC--eeEEEEeeeCCCCCEEEE
Q 000685 158 PKQE---LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGS--ISCLMTFMASSGEALLVS 232 (1352)
Q Consensus 158 ~~~~---~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~--V~slawf~~s~dg~~LaS 232 (1352)
.++. ......+.|.| |++|++|+.++..+.+.+.|.-+|....++. ++... +. +. ..+.|+++++++
T Consensus 178 ~tf~i~~~~~~ew~~l~F-----S~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs-~~~~~~~~~-~~-a~ftPds~Fvl~ 249 (311)
T KOG1446|consen 178 TTFSITDNDEAEWTDLEF-----SPDGKSILLSTNASFIYLLDAFDGTVKSTFS-GYPNAGNLP-LS-ATFTPDSKFVLS 249 (311)
T ss_pred eeEccCCCCccceeeeEE-----cCCCCEEEEEeCCCcEEEEEccCCcEeeeEe-eccCCCCcc-ee-EEECCCCcEEEE
Confidence 2222 33678889999 8899999999999999999999999888886 55432 22 22 138999999999
Q ss_pred EeCCCcEEEEeCCCCCccceecccccccc-cccceEEEEeeccCCCCCEEEEEECCCcEEEEECC
Q 000685 233 GGSDGLLILWSADHGQDSRELVPKLSLKA-HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV 296 (1352)
Q Consensus 233 gS~DGtVrVWDl~tg~~~~~~~~~~~l~g-H~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~ 296 (1352)
|+.||+|.+|+++++..+.. +.+ |...+.++.|+| ++..-.+.+..+.+|=..
T Consensus 250 gs~dg~i~vw~~~tg~~v~~------~~~~~~~~~~~~~fnP-----~~~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 250 GSDDGTIHVWNLETGKKVAV------LRGPNGGPVSCVRFNP-----RYAMFVSASSNLVFWLPD 303 (311)
T ss_pred ecCCCcEEEEEcCCCcEeeE------ecCCCCCCccccccCC-----ceeeeeecCceEEEEecc
Confidence 99999999999999987665 455 788899999999 344444556788888655
No 144
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.70 E-value=1.5e-15 Score=166.29 Aligned_cols=290 Identities=16% Similarity=0.195 Sum_probs=198.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCCceEEEE
Q 000685 12 DKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVN 91 (1352)
Q Consensus 12 ~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~sVa 91 (1352)
+-.+.+.|||||..|++-+.|..+++|++-..-.-. ..+....+. ....++...++.|+..+
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~-----~~~~~~~~~-------------~~~~~r~~eg~tvydy~ 111 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSK-----KADGPLNFS-------------KHLSYRYQEGETVYDYC 111 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhccc-----CCCCccccc-------------cceeEEeccCCEEEEEE
Confidence 345678999999999999999999999975210000 000000000 00001111112222222
Q ss_pred E------------------cCCeEEEEEcCCccccccccccccccC--CCCeeeeeecCCCCeEEEEEecCcEEEEEe-e
Q 000685 92 F------------------YDDDVRFWQLWRNRAAAAEAPTAVSNV--TSGFASPPPSTKGRHFLVICCVNKAIFLDL-V 150 (1352)
Q Consensus 92 F------------------~Dg~IrlWDl~t~~~i~~~~~~~~~~~--~~~V~slafspdg~~lLasgs~D~~I~wDl-~ 150 (1352)
| .+.-|++||..+++..... ....|. -....+++|+|||. .|.+|....+-++|. +
T Consensus 112 wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy--~~ydh~de~taAhsL~Fs~DGe-qlfaGykrcirvFdt~R 188 (406)
T KOG2919|consen 112 WYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASY--RAYDHQDEYTAAHSLQFSPDGE-QLFAGYKRCIRVFDTSR 188 (406)
T ss_pred eeeccccCCCccceeeeccccCceeeeeccccccccch--hhhhhHHhhhhheeEEecCCCC-eEeecccceEEEeeccC
Confidence 2 5788999999998764211 111111 12356899999998 667666666667787 5
Q ss_pred CCccccccccc-----cCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCC
Q 000685 151 TMRGRDIPKQE-----LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASS 225 (1352)
Q Consensus 151 t~~~~~i~~~~-----~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~ 225 (1352)
.++...+.... ...+-|.|++|+|. +...++.|+....+-||....+.++..+- +|.+.|+.++ +.+
T Consensus 189 pGr~c~vy~t~~~~k~gq~giisc~a~sP~----~~~~~a~gsY~q~~giy~~~~~~pl~llg-gh~gGvThL~---~~e 260 (406)
T KOG2919|consen 189 PGRDCPVYTTVTKGKFGQKGIISCFAFSPM----DSKTLAVGSYGQRVGIYNDDGRRPLQLLG-GHGGGVTHLQ---WCE 260 (406)
T ss_pred CCCCCcchhhhhcccccccceeeeeeccCC----CCcceeeecccceeeeEecCCCCceeeec-ccCCCeeeEE---ecc
Confidence 55433222222 23667899999652 45689999999999999988888888876 9999999998 578
Q ss_pred CCCEEEEEeC-CCcEEEEeCCCCCccceeccccccccccc-ceEEEEeeccCCCCCEEEEEECCCcEEEEECCC-CeEEE
Q 000685 226 GEALLVSGGS-DGLLILWSADHGQDSRELVPKLSLKAHDG-GVVAVELSRVMGGSPQLITIGADKTLAIWDTVS-FKELR 302 (1352)
Q Consensus 226 dg~~LaSgS~-DGtVrVWDl~tg~~~~~~~~~~~l~gH~~-~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~t-g~~l~ 302 (1352)
+|+.|.+|+. |-.|..||++.... +.+.|..|.+ .-..|-|.-. .++++|++|+.||.|++||+.+ |..+.
T Consensus 261 dGn~lfsGaRk~dkIl~WDiR~~~~-----pv~~L~rhv~~TNQRI~FDld-~~~~~LasG~tdG~V~vwdlk~~gn~~s 334 (406)
T KOG2919|consen 261 DGNKLFSGARKDDKILCWDIRYSRD-----PVYALERHVGDTNQRILFDLD-PKGEILASGDTDGSVRVWDLKDLGNEVS 334 (406)
T ss_pred CcCeecccccCCCeEEEEeehhccc-----hhhhhhhhccCccceEEEecC-CCCceeeccCCCccEEEEecCCCCCccc
Confidence 9999999886 78899999997542 3445677765 3334555432 3789999999999999999987 55444
Q ss_pred EecCCCcccccCCceeEEEeCCCCCEEEEecCCeEEeccC
Q 000685 303 RIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAIEH 342 (1352)
Q Consensus 303 ~~~~~~~l~~hs~~V~svafspdg~lLS~s~Dg~IWDi~t 342 (1352)
. +..|+..++.++++|--.+++.+...+++-..+
T Consensus 335 v------~~~~sd~vNgvslnP~mpilatssGqr~f~~~~ 368 (406)
T KOG2919|consen 335 V------TGNYSDTVNGVSLNPIMPILATSSGQRIFKYPK 368 (406)
T ss_pred c------cccccccccceecCcccceeeeccCceeecCCC
Confidence 4 567888999999999988888777777776553
No 145
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.69 E-value=1.5e-15 Score=167.05 Aligned_cols=241 Identities=16% Similarity=0.201 Sum_probs=172.8
Q ss_pred CCeEEEEEecCcEEEE-EeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEe--
Q 000685 132 GRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYT-- 208 (1352)
Q Consensus 132 g~~lLasgs~D~~I~w-Dl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~-- 208 (1352)
+..+++.++.-|+|++ |+.++++ .....+|+..|+.+.|+|. +.++++++|.|.+||+||+++..++..+-
T Consensus 104 ~~p~la~~G~~GvIrVid~~~~~~--~~~~~ghG~sINeik~~p~----~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~ 177 (385)
T KOG1034|consen 104 GNPFLAAGGYLGVIRVIDVVSGQC--SKNYRGHGGSINEIKFHPD----RPQLVLSASKDHSVRLWNIQTDVCVAVFGGV 177 (385)
T ss_pred CCeeEEeecceeEEEEEecchhhh--ccceeccCccchhhhcCCC----CCcEEEEecCCceEEEEeccCCeEEEEeccc
Confidence 4458999999999966 9998765 5567899999999999763 46799999999999999999999998873
Q ss_pred cCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccc---------------------eecccc-cccccccce
Q 000685 209 GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSR---------------------ELVPKL-SLKAHDGGV 266 (1352)
Q Consensus 209 ~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~---------------------~~~~~~-~l~gH~~~V 266 (1352)
+||.+.|.++. ++.+|.+|+||+.|.++++|++...+... ...|.+ +-.-|...|
T Consensus 178 egHrdeVLSvD---~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV 254 (385)
T KOG1034|consen 178 EGHRDEVLSVD---FSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV 254 (385)
T ss_pred ccccCcEEEEE---EcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence 48999999998 79999999999999999999998432110 001121 234578888
Q ss_pred EEEEeeccCCCCCEEEEEECCCcEEEEECC-CCeEEEEecCC-------CcccccCCceeEEEeC--CCCCEEE-EecCC
Q 000685 267 VAVELSRVMGGSPQLITIGADKTLAIWDTV-SFKELRRIKPV-------PKLACHSVASWCHPRA--PNLDILT-CVKDS 335 (1352)
Q Consensus 267 ~slafsp~~~dg~~LaSgs~DgtV~IWDl~-tg~~l~~~~~~-------~~l~~hs~~V~svafs--pdg~lLS-~s~Dg 335 (1352)
-|+.|. ++++++-|-++.|..|... -++.++..++. ..+......+|-+.|. |-+++|+ |...|
T Consensus 255 DCvrw~-----gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g 329 (385)
T KOG1034|consen 255 DCVRWF-----GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSG 329 (385)
T ss_pred HHHHHH-----hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCC
Confidence 888886 5799999999999999872 22222222111 1233445567766655 5577775 44556
Q ss_pred e--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecC
Q 000685 336 H--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDP 400 (1352)
Q Consensus 336 ~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~ 400 (1352)
+ +||++..... .............|...+|+. ++.+|+..++||+| .-||-
T Consensus 330 ~v~vwdL~~~ep~------------~~ttl~~s~~~~tVRQ~sfS~-dgs~lv~vcdd~~V-wrwdr 382 (385)
T KOG1034|consen 330 KVYVWDLDNNEPP------------KCTTLTHSKSGSTVRQTSFSR-DGSILVLVCDDGTV-WRWDR 382 (385)
T ss_pred cEEEEECCCCCCc------------cCceEEeccccceeeeeeecc-cCcEEEEEeCCCcE-EEEEe
Confidence 5 7999854210 111112222334788999998 67788888999997 57763
No 146
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.69 E-value=1.8e-15 Score=172.71 Aligned_cols=290 Identities=13% Similarity=0.083 Sum_probs=201.6
Q ss_pred EEeCCCcEEEEECCCCcEEEEEeccC-ccceEEeccccc-eeEecccccCCCccccccCCceEEEEEcCCeEEEEEcCCc
Q 000685 28 TADASDHVSVWNWEHRQVIYELKAGG-VDQRRLVGAKLE-KLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRN 105 (1352)
Q Consensus 28 Tgs~DG~VrVWDl~tg~~i~t~~~~~-~~~i~~vs~dg~-~Lasgs~d~~g~~l~~l~~g~V~sVaF~Dg~IrlWDl~t~ 105 (1352)
.++....++|||....+...++..+. ..++..+....+ .|+..+.. .|..+++|.-...
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~-------------------gdk~~~~~~K~g~ 67 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMA-------------------GDKVMRIKEKDGK 67 (673)
T ss_pred eeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecC-------------------CceeEEEecccCC
Confidence 33445568999988766555554221 233555553222 24444322 4778888865443
Q ss_pred cccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEE
Q 000685 106 RAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLV 184 (1352)
Q Consensus 106 ~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~L 184 (1352)
...........+. .-.|++..... .++++|+.++++ +||++.. ......+.|.+.|+|+.| +-...||
T Consensus 68 ~~~Vp~~~k~~gd---~~~Cv~~~s~S-~y~~sgG~~~~Vkiwdl~~k--l~hr~lkdh~stvt~v~Y-----N~~Deyi 136 (673)
T KOG4378|consen 68 TPEVPRVRKLTGD---NAFCVACASQS-LYEISGGQSGCVKIWDLRAK--LIHRFLKDHQSTVTYVDY-----NNTDEYI 136 (673)
T ss_pred CCccceeeccccc---hHHHHhhhhcc-eeeeccCcCceeeehhhHHH--HHhhhccCCcceeEEEEe-----cCCccee
Confidence 1111111111221 22333333333 488999999999 7798843 345567899999999999 5678899
Q ss_pred EEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCC-CEEEEEeCCCcEEEEeCCCCCccceecccccccccc
Q 000685 185 AFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGE-ALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHD 263 (1352)
Q Consensus 185 asGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg-~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~ 263 (1352)
++++..|.|.|..+.++.....|..+....|.-+. +++.. .+|.+++.+|.|.+||+........+ ...|.
T Consensus 137 Asvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~---ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~-----~~~Hs 208 (673)
T KOG4378|consen 137 ASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLR---YSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA-----SEAHS 208 (673)
T ss_pred EEeccCCcEEEEecccCccccceecCCCCeEEEee---cccccceeeEeeccCCeEEEEeccCCCcccch-----hhhcc
Confidence 99999999999999998877777533344555565 56654 46778999999999999876544433 57899
Q ss_pred cceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEE-EEecCCe--EEec
Q 000685 264 GGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAI 340 (1352)
Q Consensus 264 ~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lL-S~s~Dg~--IWDi 340 (1352)
.+...|+|+|. +..+|++.|.|+.|.+||....+...++ ....+.+.++|+++|.+| +|+..|+ .||+
T Consensus 209 AP~~gicfsps--ne~l~vsVG~Dkki~~yD~~s~~s~~~l-------~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~ 279 (673)
T KOG4378|consen 209 APCRGICFSPS--NEALLVSVGYDKKINIYDIRSQASTDRL-------TYSHPLSTVAFSECGTYLCAGNSKGELIAYDM 279 (673)
T ss_pred CCcCcceecCC--ccceEEEecccceEEEeeccccccccee-------eecCCcceeeecCCceEEEeecCCceEEEEec
Confidence 99999999994 7789999999999999999977665553 223456689999999988 5667787 4888
Q ss_pred cCCcccccccCccccCCCCCCeEEecCCcccEEEEEEec
Q 000685 341 EHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHS 379 (1352)
Q Consensus 341 ~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp 379 (1352)
+.. ..|+.++..|.. .|.|++|-+
T Consensus 280 R~~--------------k~Pv~v~sah~~-sVt~vafq~ 303 (673)
T KOG4378|consen 280 RST--------------KAPVAVRSAHDA-SVTRVAFQP 303 (673)
T ss_pred ccC--------------CCCceEeeeccc-ceeEEEeee
Confidence 743 246778888887 799999999
No 147
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.69 E-value=7.9e-16 Score=175.61 Aligned_cols=239 Identities=13% Similarity=0.149 Sum_probs=181.0
Q ss_pred CCCCeeeeeecCCCCeEEEEEecCcEEEEEeeCCccc-ccccc--ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEE
Q 000685 119 VTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGR-DIPKQ--ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRV 195 (1352)
Q Consensus 119 ~~~~V~slafspdg~~lLasgs~D~~I~wDl~t~~~~-~i~~~--~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrI 195 (1352)
|...|.++..+...+ .+.+|+..++.+||+.....+ .+..+ .....+|+++.. .+||+.|++|+.-.++.|
T Consensus 418 HGEvVcAvtIS~~tr-hVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL-----~pdgrtLivGGeastlsi 491 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTR-HVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKL-----LPDGRTLIVGGEASTLSI 491 (705)
T ss_pred cCcEEEEEEecCCcc-eeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEe-----cCCCceEEeccccceeee
Confidence 366788888888776 889999999999988643221 11111 123568998888 679999999999999999
Q ss_pred EECCCCeEEEEEe-cCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeecc
Q 000685 196 LSMISWKLVRRYT-GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRV 274 (1352)
Q Consensus 196 WDl~t~~~i~~l~-~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~ 274 (1352)
||+..-....+.. ....-..+.++ .++|.+..++|+.||.|.|||+.+...++. |+||.+++.||.+++
T Consensus 492 WDLAapTprikaeltssapaCyALa---~spDakvcFsccsdGnI~vwDLhnq~~Vrq------fqGhtDGascIdis~- 561 (705)
T KOG0639|consen 492 WDLAAPTPRIKAELTSSAPACYALA---ISPDAKVCFSCCSDGNIAVWDLHNQTLVRQ------FQGHTDGASCIDISK- 561 (705)
T ss_pred eeccCCCcchhhhcCCcchhhhhhh---cCCccceeeeeccCCcEEEEEcccceeeec------ccCCCCCceeEEecC-
Confidence 9998654322221 02222344454 899999999999999999999998876665 799999999999998
Q ss_pred CCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEEEEecC-CeEEeccCCcccccccCcc
Q 000685 275 MGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKD-SHIWAIEHPTYSALTRPLC 353 (1352)
Q Consensus 275 ~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lLS~s~D-g~IWDi~t~~~~~~~~~l~ 353 (1352)
+|..|-|||-|.+||-||+++++.++. ...+..|.++-++|++++|+.|+. +.+|-+.+...
T Consensus 562 --dGtklWTGGlDntvRcWDlregrqlqq-------hdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp-------- 624 (705)
T KOG0639|consen 562 --DGTKLWTGGLDNTVRCWDLREGRQLQQ-------HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-------- 624 (705)
T ss_pred --CCceeecCCCccceeehhhhhhhhhhh-------hhhhhhheecccCCCccceeeecccCcEEEEecCCc--------
Confidence 899999999999999999999987665 233457889999999998876655 56888775421
Q ss_pred ccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEec
Q 000685 354 ELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1352)
Q Consensus 354 ~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd 399 (1352)
....+..|.+ -|.++.|.+ -+..+++.+.|+.+ -.|.
T Consensus 625 ------~kyqlhlheS-cVLSlKFa~-cGkwfvStGkDnlL-nawr 661 (705)
T KOG0639|consen 625 ------EKYQLHLHES-CVLSLKFAY-CGKWFVSTGKDNLL-NAWR 661 (705)
T ss_pred ------cceeeccccc-EEEEEEecc-cCceeeecCchhhh-hhcc
Confidence 1223445656 799999999 56667887888875 5663
No 148
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.69 E-value=1.5e-15 Score=178.33 Aligned_cols=286 Identities=17% Similarity=0.201 Sum_probs=196.4
Q ss_pred ceEEEEEcCCeEEEEEcCCccccccc--cccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCcccccccccc
Q 000685 86 SVKQVNFYDDDVRFWQLWRNRAAAAE--APTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1352)
Q Consensus 86 ~V~sVaF~Dg~IrlWDl~t~~~i~~~--~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~ 162 (1352)
.|..++-.||.|.++|.......... ...... |.+.|..+.|.| ++..|++.+.|.++ .||+++.++.......+
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~a-H~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G 142 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFRLEERQLKKPLA-HKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLG 142 (720)
T ss_pred ceEEEecCCCceeeecchhhhcchhhhhhccccc-ccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecc
Confidence 34444447899999998765433111 122233 488999999999 77799999999999 67999887766556789
Q ss_pred CCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCe---------------------------EEEEEecCCCCCe
Q 000685 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK---------------------------LVRRYTGGHKGSI 215 (1352)
Q Consensus 163 h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~---------------------------~i~~l~~gH~~~V 215 (1352)
|...|.+++|+|. +...+++|+.||.|.|||++-.. .+.... .|...|
T Consensus 143 H~~SvkS~cf~~~----n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k-A~s~ti 217 (720)
T KOG0321|consen 143 HTGSVKSECFMPT----NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK-AASNTI 217 (720)
T ss_pred cccccchhhhccC----CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc-cccCce
Confidence 9999999999753 56789999999999999986321 001111 344444
Q ss_pred eEEEEeeeCCCCCEEEEEeC-CCcEEEEeCCCCCccceecccc--ccccc---ccceEEEEeeccCCCCCEEEEEECCCc
Q 000685 216 SCLMTFMASSGEALLVSGGS-DGLLILWSADHGQDSRELVPKL--SLKAH---DGGVVAVELSRVMGGSPQLITIGADKT 289 (1352)
Q Consensus 216 ~slawf~~s~dg~~LaSgS~-DGtVrVWDl~tg~~~~~~~~~~--~l~gH---~~~V~slafsp~~~dg~~LaSgs~Dgt 289 (1352)
.+-.-..+..|...|++++. |+.|+|||++.........+.. .+..| ..++.++.... .|.+|...+.|++
T Consensus 218 ~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs---sGt~L~AsCtD~s 294 (720)
T KOG0321|consen 218 FSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS---SGTYLFASCTDNS 294 (720)
T ss_pred eeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC---CCCeEEEEecCCc
Confidence 44001124568889999888 9999999999866543322221 12333 34577777765 5778877777999
Q ss_pred EEEEECCCCeEEEEecCCCcccccCCcee--EEEeCCCCCEE-EEecCCe--EEeccCCcccccccCccccCCCCCCeEE
Q 000685 290 LAIWDTVSFKELRRIKPVPKLACHSVASW--CHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVL 364 (1352)
Q Consensus 290 V~IWDl~tg~~l~~~~~~~~l~~hs~~V~--svafspdg~lL-S~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l 364 (1352)
|.+||+.+... .+...+.+|...-. .-..+||+..+ +++.|.. +|.+.+.. .+...+
T Consensus 295 Iy~ynm~s~s~----sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e--------------~~~~~l 356 (720)
T KOG0321|consen 295 IYFYNMRSLSI----SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE--------------APPALL 356 (720)
T ss_pred EEEEeccccCc----CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc--------------CChhhh
Confidence 99999986432 11222334333211 34567888855 7888885 89888642 344556
Q ss_pred ecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCC
Q 000685 365 AHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1352)
Q Consensus 365 ~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~ 401 (1352)
.+|.. .|.+++|.|..-.-++++++|-.+ ++|++.
T Consensus 357 ~Ght~-eVt~V~w~pS~~t~v~TcSdD~~~-kiW~l~ 391 (720)
T KOG0321|consen 357 LGHTR-EVTTVRWLPSATTPVATCSDDFRV-KIWRLS 391 (720)
T ss_pred hCcce-EEEEEeeccccCCCceeeccCcce-EEEecc
Confidence 67777 899999999766668888999997 899974
No 149
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=5.3e-15 Score=180.21 Aligned_cols=244 Identities=14% Similarity=0.113 Sum_probs=186.7
Q ss_pred CCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEEC
Q 000685 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSM 198 (1352)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl 198 (1352)
....+.++|.++|. +|++|+.|+.| +|+..... ....+...++..|.+++. ++.+|++|+.+++|.+|.+
T Consensus 13 t~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~-e~P~ti~~~g~~v~~ia~-------~s~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 13 TGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDE-EEPETIDISGELVSSIAC-------YSNHFLTGSEQNTVLRYKF 83 (933)
T ss_pred cCceEEEEEcCCCC-EEEEecCCCceEEeecCCcc-cCCchhhccCceeEEEee-------cccceEEeeccceEEEeeC
Confidence 55688999999998 89999999988 55433321 112222337888999887 6779999999999999999
Q ss_pred CCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCC
Q 000685 199 ISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGS 278 (1352)
Q Consensus 199 ~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg 278 (1352)
.+++.-..+. ..+-++.+++ ++.+|++++.||.|-.|++-++.+..... .+++|+.+|.+|.|+| .+
T Consensus 84 ps~~~~~iL~-Rftlp~r~~~---v~g~g~~iaagsdD~~vK~~~~~D~s~~~------~lrgh~apVl~l~~~p---~~ 150 (933)
T KOG1274|consen 84 PSGEEDTILA-RFTLPIRDLA---VSGSGKMIAAGSDDTAVKLLNLDDSSQEK------VLRGHDAPVLQLSYDP---KG 150 (933)
T ss_pred CCCCccceee-eeeccceEEE---EecCCcEEEeecCceeEEEEeccccchhe------eecccCCceeeeeEcC---CC
Confidence 8775533332 4557888887 78999999999999999999998876544 4799999999999999 89
Q ss_pred CEEEEEECCCcEEEEECCCCeEEEEecCCCccccc--CCceeEEEeCCC-CCEEEEecCCe--EEeccCCcccccccCcc
Q 000685 279 PQLITIGADKTLAIWDTVSFKELRRIKPVPKLACH--SVASWCHPRAPN-LDILTCVKDSH--IWAIEHPTYSALTRPLC 353 (1352)
Q Consensus 279 ~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~h--s~~V~svafspd-g~lLS~s~Dg~--IWDi~t~~~~~~~~~l~ 353 (1352)
.+|++.+.||.|++||+.++.+..++..+...... +..+..++|+|+ |.+++.+.|+. +++....
T Consensus 151 ~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w---------- 220 (933)
T KOG1274|consen 151 NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW---------- 220 (933)
T ss_pred CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc----------
Confidence 99999999999999999999988877655443322 334568999999 55777777775 5655432
Q ss_pred ccCCCCCCeEEecCC-cccEEEEEEecCCCcEEEEEECCCeEEEEecCCC
Q 000685 354 ELSSLVPPQVLAHHK-KLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1352)
Q Consensus 354 ~~~~~~~~~~l~~h~-~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~~ 402 (1352)
.....++... ...+.++.|+| .|.+||+++.+|.| .+||..+
T Consensus 221 -----e~~f~Lr~~~~ss~~~~~~wsP-nG~YiAAs~~~g~I-~vWnv~t 263 (933)
T KOG1274|consen 221 -----ELQFKLRDKLSSSKFSDLQWSP-NGKYIAASTLDGQI-LVWNVDT 263 (933)
T ss_pred -----eeheeecccccccceEEEEEcC-CCcEEeeeccCCcE-EEEeccc
Confidence 1122232222 22499999999 58889999999998 5999884
No 150
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.68 E-value=4.1e-16 Score=172.99 Aligned_cols=244 Identities=13% Similarity=0.177 Sum_probs=177.7
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec--cccceeEecccccCCCcccc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEA 81 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~~ 81 (1352)
+++|+.|.+-|+.++++. ..++|++.|.+|+.|.++- ..++++... ..+.-++ ..+..+++
T Consensus 102 ~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg~--s~~~gIdh~~~~~~FaT------------ 164 (433)
T KOG0268|consen 102 IRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILGK--SVYLGIDHHRKNSVFAT------------ 164 (433)
T ss_pred hheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeecc--ccccccccccccccccc------------
Confidence 678999999999999987 6788999999999999764 455555421 1111111 11222222
Q ss_pred ccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEE-EEeeCCcccccccc
Q 000685 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPKQ 160 (1352)
Q Consensus 82 l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~-wDl~t~~~~~i~~~ 160 (1352)
....|.|||......+. ...-. ...|.++.|+|....+|++|+.|+.|+ +|..+......
T Consensus 165 -----------cGe~i~IWD~~R~~Pv~----smswG-~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~K--- 225 (433)
T KOG0268|consen 165 -----------CGEQIDIWDEQRDNPVS----SMSWG-ADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKK--- 225 (433)
T ss_pred -----------cCceeeecccccCCccc----eeecC-CCceeEEecCCCcchheeeeccCCceEEEecccCCccce---
Confidence 24578999987765542 22222 456899999998888899987777774 49987653221
Q ss_pred ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcE
Q 000685 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1352)
Q Consensus 161 ~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~-~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtV 239 (1352)
......-+.|+| +|++-.+++|+.|..+..||++.. +.+.... +|.+.|+++. |+|.|+-|+|||.|.+|
T Consensus 226 Vi~~mRTN~Isw-----nPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~-dhvsAV~dVd---fsptG~EfvsgsyDksI 296 (433)
T KOG0268|consen 226 VILTMRTNTICW-----NPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK-DHVSAVMDVD---FSPTGQEFVSGSYDKSI 296 (433)
T ss_pred eeeeccccceec-----Cccccceeeccccccceehhhhhhcccchhhc-ccceeEEEec---cCCCcchhccccccceE
Confidence 122345567899 677888999999999999999875 4445555 8999999998 89999999999999999
Q ss_pred EEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeE
Q 000685 240 ILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKE 300 (1352)
Q Consensus 240 rVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~ 300 (1352)
|||..+.+..-..+ . ...-..|.|+.|+. |..+++|||+|+.|++|.....+.
T Consensus 297 RIf~~~~~~SRdiY-h----tkRMq~V~~Vk~S~---Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 297 RIFPVNHGHSRDIY-H----TKRMQHVFCVKYSM---DSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred EEeecCCCcchhhh-h----HhhhheeeEEEEec---cccEEEecCCCcceeeeecchhhh
Confidence 99999876532211 0 00112499999998 899999999999999999765443
No 151
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.68 E-value=5.7e-15 Score=159.73 Aligned_cols=279 Identities=18% Similarity=0.182 Sum_probs=192.9
Q ss_pred cCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecC--------cEEEEEeeCCc-------cccc
Q 000685 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVN--------KAIFLDLVTMR-------GRDI 157 (1352)
Q Consensus 93 ~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D--------~~I~wDl~t~~-------~~~i 157 (1352)
.|+.|.+.++...... .......|+.+.|+.++-+|-.+.+|+++..+ +.-+|.+.... ..++
T Consensus 38 ~dNqVhll~~d~e~s~--l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v 115 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSE--LLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECV 115 (370)
T ss_pred CcceeEEEEecCccch--hhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHh
Confidence 4677777766554332 12344556688999999999888788887642 22266443211 1122
Q ss_pred cccc-cCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeE-EEEEe----cCCCCCeeEEEEeeeCCCCCEEE
Q 000685 158 PKQE-LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKL-VRRYT----GGHKGSISCLMTFMASSGEALLV 231 (1352)
Q Consensus 158 ~~~~-~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~-i~~l~----~gH~~~V~slawf~~s~dg~~La 231 (1352)
..+. .+-+.|.|+.| .|++..+++-. |..|.+|++..+.. +..+. .+|....++-+|- .+.+++.++
T Consensus 116 ~~Ldteavg~i~cvew-----~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~Ws-pHHdgnqv~ 188 (370)
T KOG1007|consen 116 ASLDTEAVGKINCVEW-----EPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWS-PHHDGNQVA 188 (370)
T ss_pred hcCCHHHhCceeeEEE-----cCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccC-CCCccceEE
Confidence 2222 34558999999 45777777664 88899999987644 33332 2456677777774 556888888
Q ss_pred EEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCccc
Q 000685 232 SGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLA 311 (1352)
Q Consensus 232 SgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~ 311 (1352)
+. .|+++..||+++.++...+ -.+|...|..+.|+| ....+|+||++||.|+|||.+.-+. ++..+.
T Consensus 189 tt-~d~tl~~~D~RT~~~~~sI-----~dAHgq~vrdlDfNp--nkq~~lvt~gDdgyvriWD~R~tk~-----pv~el~ 255 (370)
T KOG1007|consen 189 TT-SDSTLQFWDLRTMKKNNSI-----EDAHGQRVRDLDFNP--NKQHILVTCGDDGYVRIWDTRKTKF-----PVQELP 255 (370)
T ss_pred Ee-CCCcEEEEEccchhhhcch-----hhhhcceeeeccCCC--CceEEEEEcCCCccEEEEeccCCCc-----cccccC
Confidence 74 5899999999987654432 367888999999999 3567899999999999999986441 334489
Q ss_pred ccCCceeEEEeCCCCC--EEEEecCCe--EEeccCCccccc---------------ccCccccCCCCCCeEEecCCcccE
Q 000685 312 CHSVASWCHPRAPNLD--ILTCVKDSH--IWAIEHPTYSAL---------------TRPLCELSSLVPPQVLAHHKKLRV 372 (1352)
Q Consensus 312 ~hs~~V~svafspdg~--lLS~s~Dg~--IWDi~t~~~~~~---------------~~~l~~~~~~~~~~~l~~h~~~~V 372 (1352)
+|+-.||++.|+|..+ +|++|.|.+ +|....-..... ..+...+ ..-.+.++..|.+ .|
T Consensus 256 ~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL-~dg~l~tydehED-SV 333 (370)
T KOG1007|consen 256 GHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPL-QDGQLETYDEHED-SV 333 (370)
T ss_pred CCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccc-ccccccccccccc-ce
Confidence 9999999999999755 568999987 565543211000 0000001 1112346777877 89
Q ss_pred EEEEEecCCCcEEEEEECCCeEE
Q 000685 373 YCMVAHSLQPHLVATGTNVGVII 395 (1352)
Q Consensus 373 ~~la~sp~~~~lLatGs~DG~Il 395 (1352)
++++|+..++.++|+-+.||.++
T Consensus 334 Y~~aWSsadPWiFASLSYDGRvi 356 (370)
T KOG1007|consen 334 YALAWSSADPWIFASLSYDGRVI 356 (370)
T ss_pred EEEeeccCCCeeEEEeccCceEE
Confidence 99999999999999999999985
No 152
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=7.6e-15 Score=160.44 Aligned_cols=227 Identities=15% Similarity=0.212 Sum_probs=157.7
Q ss_pred EEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccc--cccccCCCCeEEEEEe
Q 000685 97 VRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDI--PKQELDNKSLVCMEFL 173 (1352)
Q Consensus 97 IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i--~~~~~h~~~V~~vaf~ 173 (1352)
.+-|+-...+..+.........|...|++++|+.||+ .|++++.|+.| +|++.....+.- ......-+..+.+.|
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK-~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~F- 140 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGK-KLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVF- 140 (420)
T ss_pred hhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCc-eeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEE-
Confidence 5556666665555443333444589999999999998 99999999999 557665432211 111223446788999
Q ss_pred eccccCCCCEE-EEEECCCcEEEEECCC---CeEE--------EEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEE
Q 000685 174 SRSAVGDVPLV-AFGSSDGVIRVLSMIS---WKLV--------RRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1352)
Q Consensus 174 P~s~Spdg~~L-asGs~DGtIrIWDl~t---~~~i--------~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrV 241 (1352)
+||.+-+ +++-...++++|.+.. |... ..+...|.-.+..+- ...++.+|+|++.|.+|.+
T Consensus 141 ----apDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iG---iA~~~k~imsas~dt~i~l 213 (420)
T KOG2096|consen 141 ----APDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIG---IAGNAKYIMSASLDTKICL 213 (420)
T ss_pred ----CCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEe---ecCCceEEEEecCCCcEEE
Confidence 6676654 4455666899998742 2111 112234555565554 5678899999999999999
Q ss_pred EeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCe--EEEEecCCCcccccCCceeE
Q 000685 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK--ELRRIKPVPKLACHSVASWC 319 (1352)
Q Consensus 242 WDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~--~l~~~~~~~~l~~hs~~V~s 319 (1352)
|+++ |+.+.. +......-+..+.+| +|++|++++----|++|..--++ ..+....+..+.||...|..
T Consensus 214 w~lk-Gq~L~~------idtnq~~n~~aavSP---~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~ 283 (420)
T KOG2096|consen 214 WDLK-GQLLQS------IDTNQSSNYDAAVSP---DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLA 283 (420)
T ss_pred EecC-Cceeee------eccccccccceeeCC---CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheee
Confidence 9999 776655 233333445678899 89999999999999999864221 12333334568999999999
Q ss_pred EEeCCCCC-EEEEecCCe--EEeccC
Q 000685 320 HPRAPNLD-ILTCVKDSH--IWAIEH 342 (1352)
Q Consensus 320 vafspdg~-lLS~s~Dg~--IWDi~t 342 (1352)
++|+++.. +++.|.||+ |||++-
T Consensus 284 ~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 284 AAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred eeeCCCcceeEEEecCCcEEEeeccc
Confidence 99999977 668999995 999873
No 153
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.67 E-value=6.9e-15 Score=159.29 Aligned_cols=213 Identities=17% Similarity=0.200 Sum_probs=161.8
Q ss_pred cCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCcc----------cc---ccccccCCCCeEEEEEeeccccCCCCE
Q 000685 118 NVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRG----------RD---IPKQELDNKSLVCMEFLSRSAVGDVPL 183 (1352)
Q Consensus 118 ~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~----------~~---i~~~~~h~~~V~~vaf~P~s~Spdg~~ 183 (1352)
.|.+.|+++...+...+++++|+.|+.+ +||++...- ++ ......|.-.|..+.|.|. |...
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~----DtGm 116 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI----DTGM 116 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee----cCce
Confidence 3467788888877655699999999988 668865431 01 1122456778999999873 5668
Q ss_pred EEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccc
Q 000685 184 VAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHD 263 (1352)
Q Consensus 184 LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~ 263 (1352)
+.+++-|.++++||.++.+....|. ..+.|++-+|......-.++++|..|-.|++.|+.+|.+.+. |.||.
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~------LsGHr 188 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHT------LSGHR 188 (397)
T ss_pred eecccccceEEEeecccceeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceee------ecccc
Confidence 9999999999999999988877764 556666655432233355888999999999999999987665 89999
Q ss_pred cceEEEEeeccCCCCCEEEEEECCCcEEEEECCCC-eEEEEecCCC--------cccccCCceeEEEeCCCCCEE-EEec
Q 000685 264 GGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSF-KELRRIKPVP--------KLACHSVASWCHPRAPNLDIL-TCVK 333 (1352)
Q Consensus 264 ~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg-~~l~~~~~~~--------~l~~hs~~V~svafspdg~lL-S~s~ 333 (1352)
++|.++.|+| ...-.|++||.||.|++||++.- .|+..+.... .-..|.+.|..++|+.++..+ +++.
T Consensus 189 ~~vlaV~Wsp--~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt 266 (397)
T KOG4283|consen 189 DGVLAVEWSP--SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT 266 (397)
T ss_pred CceEEEEecc--CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC
Confidence 9999999999 35567889999999999999864 4555443221 235788899999999999865 7887
Q ss_pred CCe--EEeccCCc
Q 000685 334 DSH--IWAIEHPT 344 (1352)
Q Consensus 334 Dg~--IWDi~t~~ 344 (1352)
|.+ +|+..++.
T Consensus 267 d~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 267 DDRIRVWNMESGR 279 (397)
T ss_pred ccceEEeecccCc
Confidence 774 89998763
No 154
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=2.5e-15 Score=175.24 Aligned_cols=291 Identities=17% Similarity=0.176 Sum_probs=204.1
Q ss_pred ccCccceEEec--cccceeEecccccCCCccccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeee
Q 000685 51 AGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPP 128 (1352)
Q Consensus 51 ~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slaf 128 (1352)
.+|.+.+++++ +.|..|++|+ .||++|+|.+.+++|+. . ....+.|.|++|
T Consensus 397 rGHtg~Vr~iSvdp~G~wlasGs---------------------dDGtvriWEi~TgRcvr----~--~~~d~~I~~vaw 449 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSGEWLASGS---------------------DDGTVRIWEIATGRCVR----T--VQFDSEIRSVAW 449 (733)
T ss_pred eccCCeEEEEEecCCcceeeecC---------------------CCCcEEEEEeecceEEE----E--EeecceeEEEEe
Confidence 37778888776 8899999987 78999999999999984 1 112557999999
Q ss_pred cCCCCeE-EEEEecCcEEEEEeeCCcc-----------------------------------ccccccccCCCCeEEEEE
Q 000685 129 STKGRHF-LVICCVNKAIFLDLVTMRG-----------------------------------RDIPKQELDNKSLVCMEF 172 (1352)
Q Consensus 129 spdg~~l-Lasgs~D~~I~wDl~t~~~-----------------------------------~~i~~~~~h~~~V~~vaf 172 (1352)
+|.+... |+++-.+...++|..-|.. ..++....|...|+.|.|
T Consensus 450 ~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtW 529 (733)
T KOG0650|consen 450 NPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTW 529 (733)
T ss_pred cCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeee
Confidence 9987653 4444444433333221100 011223446778999999
Q ss_pred eeccccCCCCEEEEEECC---CcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCc
Q 000685 173 LSRSAVGDVPLVAFGSSD---GVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQD 249 (1352)
Q Consensus 173 ~P~s~Spdg~~LasGs~D---GtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~ 249 (1352)
+..|.||++..-+ ..|.|+++...+...-|. -..+.|.++. |+|...+|+.++ -..|++||+.....
T Consensus 530 -----HrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~-kskG~vq~v~---FHPs~p~lfVaT-q~~vRiYdL~kqel 599 (733)
T KOG0650|consen 530 -----HRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFR-KSKGLVQRVK---FHPSKPYLFVAT-QRSVRIYDLSKQEL 599 (733)
T ss_pred -----ecCCceEEEeccCCCcceEEEEecccccccCchh-hcCCceeEEE---ecCCCceEEEEe-ccceEEEehhHHHH
Confidence 5689999988654 468899987665544443 4557788886 788888887765 56899999988665
Q ss_pred cceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEE
Q 000685 250 SRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL 329 (1352)
Q Consensus 250 ~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lL 329 (1352)
+++ +......|.+++.|| .|..|+.|+.|+.+..||+.-.. ++...+..|...+++++||+.-.++
T Consensus 600 vKk------L~tg~kwiS~msihp---~GDnli~gs~d~k~~WfDldlss-----kPyk~lr~H~~avr~Va~H~ryPLf 665 (733)
T KOG0650|consen 600 VKK------LLTGSKWISSMSIHP---NGDNLILGSYDKKMCWFDLDLSS-----KPYKTLRLHEKAVRSVAFHKRYPLF 665 (733)
T ss_pred HHH------HhcCCeeeeeeeecC---CCCeEEEecCCCeeEEEEcccCc-----chhHHhhhhhhhhhhhhhcccccee
Confidence 554 444566799999999 79999999999999999998543 2334478999999999999998877
Q ss_pred -EEecCCeEEeccCCcccccccCccccCCCCCCeEEecCCc---ccEEEEEEecCCCcEEEEEECCCeEEEEe
Q 000685 330 -TCVKDSHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKK---LRVYCMVAHSLQPHLVATGTNVGVIISEF 398 (1352)
Q Consensus 330 -S~s~Dg~IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~---~~V~~la~sp~~~~lLatGs~DG~IlriW 398 (1352)
+|+.||++.-.....+ ..+....-.+++..+.+|.. ..|....|||..+. |++++.||.| |+|
T Consensus 666 as~sdDgtv~Vfhg~VY----~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpW-LfsAGAd~ti-rlf 732 (733)
T KOG0650|consen 666 ASGSDDGTVIVFHGMVY----NDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPW-LFSAGADGTI-RLF 732 (733)
T ss_pred eeecCCCcEEEEeeeee----hhhhcCCceEeeeeccCceeecccceEeecccCCCce-EEecCCCceE-Eee
Confidence 5677787322222111 11212222355666667654 24888889996555 7888889997 888
No 155
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.67 E-value=2.1e-15 Score=177.30 Aligned_cols=276 Identities=17% Similarity=0.208 Sum_probs=168.0
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE-EeccCccceEEec--c-ccceeEecccccCCCcc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYE-LKAGGVDQRRLVG--A-KLEKLAEGELEHKGKPT 79 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t-~~~~~~~~i~~vs--~-dg~~Lasgs~d~~g~~l 79 (1352)
++.+..|.+.|..+.|-|....|++++.|.++++||+.+++++.. +..+|...+.+++ + +-..+++|+
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGg-------- 164 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGG-------- 164 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeecc--------
Confidence 677889999999999999666999999999999999998777654 2224433333332 1 112222222
Q ss_pred ccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEEEeeCCccccccc
Q 000685 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPK 159 (1352)
Q Consensus 80 ~~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl~t~~~~~i~~ 159 (1352)
.||.|.|||++-...- .. .. ... .+ ++...+.- -......+.+..
T Consensus 165 -------------RDg~illWD~R~n~~d-----~~-e~------------~~~-~~-~~~~n~~p--tpskp~~kr~~k 209 (720)
T KOG0321|consen 165 -------------RDGEILLWDCRCNGVD-----AL-EE------------FDN-RI-YGRHNTAP--TPSKPLKKRIRK 209 (720)
T ss_pred -------------CCCcEEEEEEeccchh-----hH-HH------------Hhh-hh-hccccCCC--CCCchhhccccc
Confidence 4555555555433210 00 00 000 00 00000000 000000011222
Q ss_pred cccCCC----CeEEEEEeeccccCCCCEEEEEEC-CCcEEEEECCCCeEEEEEe-------cCC---CCCeeEEEEeeeC
Q 000685 160 QELDNK----SLVCMEFLSRSAVGDVPLVAFGSS-DGVIRVLSMISWKLVRRYT-------GGH---KGSISCLMTFMAS 224 (1352)
Q Consensus 160 ~~~h~~----~V~~vaf~P~s~Spdg~~LasGs~-DGtIrIWDl~t~~~i~~l~-------~gH---~~~V~slawf~~s 224 (1352)
...+.. .|+.+.| .|...|++++. |+.|++||++......... .-| ...+.++. ..
T Consensus 210 ~kA~s~ti~ssvTvv~f------kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~---lD 280 (720)
T KOG0321|consen 210 WKAASNTIFSSVTVVLF------KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLI---LD 280 (720)
T ss_pred cccccCceeeeeEEEEE------eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEE---ec
Confidence 233333 4555666 47888999887 9999999998754432221 123 33455554 66
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceE--EEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEE
Q 000685 225 SGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVV--AVELSRVMGGSPQLITIGADKTLAIWDTVSFKELR 302 (1352)
Q Consensus 225 ~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~--slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~ 302 (1352)
..|.+|...+.|+.|.+|++.+-.. .+...+.+|...-. .-..+| ++.+|++|+.|....+|.+.+.+.--
T Consensus 281 ssGt~L~AsCtD~sIy~ynm~s~s~----sP~~~~sg~~~~sf~vks~lSp---d~~~l~SgSsd~~ayiw~vs~~e~~~ 353 (720)
T KOG0321|consen 281 SSGTYLFASCTDNSIYFYNMRSLSI----SPVAEFSGKLNSSFYVKSELSP---DDCSLLSGSSDEQAYIWVVSSPEAPP 353 (720)
T ss_pred CCCCeEEEEecCCcEEEEeccccCc----CchhhccCcccceeeeeeecCC---CCceEeccCCCcceeeeeecCccCCh
Confidence 6677777667799999999987542 23333444432211 123455 78999999999999999998765322
Q ss_pred EecCCCcccccCCceeEEEeCCC--CCEEEEecCCe--EEeccCC
Q 000685 303 RIKPVPKLACHSVASWCHPRAPN--LDILTCVKDSH--IWAIEHP 343 (1352)
Q Consensus 303 ~~~~~~~l~~hs~~V~svafspd--g~lLS~s~Dg~--IWDi~t~ 343 (1352)
..+.||+..|++++|.|. ..+++|+.|-+ ||++..+
T Consensus 354 -----~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 354 -----ALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred -----hhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 237899999999999875 66999998875 8999654
No 156
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.66 E-value=2.3e-15 Score=171.81 Aligned_cols=269 Identities=12% Similarity=0.163 Sum_probs=188.7
Q ss_pred CCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEEEeeCCcccccccc-ccCCCCeEEEEE
Q 000685 94 DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQ-ELDNKSLVCMEF 172 (1352)
Q Consensus 94 Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl~t~~~~~i~~~-~~h~~~V~~vaf 172 (1352)
...+++||+.............. ...+.+++|+......+++.+.|.++++.-+.++.-.++.. ....+.-.|+..
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~---~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~ 87 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTA---EPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVAC 87 (673)
T ss_pred CCceEEeecccccCccccccCCC---CCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhh
Confidence 56899999887644321111111 22488899988663233334566667554444432223222 222334444444
Q ss_pred eeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccce
Q 000685 173 LSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRE 252 (1352)
Q Consensus 173 ~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~ 252 (1352)
.....|+++|+..++|+|||++...+.+.+. +|...|+++. +.....+|++++..|.|.|..+.++.....
T Consensus 88 -----~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lk-dh~stvt~v~---YN~~DeyiAsvs~gGdiiih~~~t~~~tt~ 158 (673)
T KOG4378|consen 88 -----ASQSLYEISGGQSGCVKIWDLRAKLIHRFLK-DHQSTVTYVD---YNNTDEYIASVSDGGDIIIHGTKTKQKTTT 158 (673)
T ss_pred -----hhcceeeeccCcCceeeehhhHHHHHhhhcc-CCcceeEEEE---ecCCcceeEEeccCCcEEEEecccCccccc
Confidence 2235899999999999999999655555555 9999999997 677888999999999999999998865443
Q ss_pred ecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCC--EEE
Q 000685 253 LVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD--ILT 330 (1352)
Q Consensus 253 ~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~--lLS 330 (1352)
+ -.+....|.-+.|+|. ...+|.+++++|.|.+||+....+...+ ...|+.+...++|+|... +++
T Consensus 159 f-----~~~sgqsvRll~ys~s--kr~lL~~asd~G~VtlwDv~g~sp~~~~-----~~~HsAP~~gicfspsne~l~vs 226 (673)
T KOG4378|consen 159 F-----TIDSGQSVRLLRYSPS--KRFLLSIASDKGAVTLWDVQGMSPIFHA-----SEAHSAPCRGICFSPSNEALLVS 226 (673)
T ss_pred e-----ecCCCCeEEEeecccc--cceeeEeeccCCeEEEEeccCCCcccch-----hhhccCCcCcceecCCccceEEE
Confidence 2 1122344678999993 5678889999999999999877766554 578999999999999877 337
Q ss_pred EecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCCCCC
Q 000685 331 CVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPA 405 (1352)
Q Consensus 331 ~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~ 405 (1352)
.|.|.+ +||+..... ...+... .+...++|.+ ++.+|++|+..|.| ..||+|..+.
T Consensus 227 VG~Dkki~~yD~~s~~s---------------~~~l~y~--~Plstvaf~~-~G~~L~aG~s~G~~-i~YD~R~~k~ 284 (673)
T KOG4378|consen 227 VGYDKKINIYDIRSQAS---------------TDRLTYS--HPLSTVAFSE-CGTYLCAGNSKGEL-IAYDMRSTKA 284 (673)
T ss_pred ecccceEEEeecccccc---------------cceeeec--CCcceeeecC-CceEEEeecCCceE-EEEecccCCC
Confidence 899997 677764321 1122221 2688999999 78999999999998 5999998654
No 157
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.66 E-value=4.9e-13 Score=156.16 Aligned_cols=326 Identities=23% Similarity=0.366 Sum_probs=229.4
Q ss_pred EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-EEEEEeccCccceEE--e-ccccc-eeEecccccCCCccc
Q 000685 6 AFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQ-VIYELKAGGVDQRRL--V-GAKLE-KLAEGELEHKGKPTE 80 (1352)
Q Consensus 6 ~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~-~i~t~~~~~~~~i~~--v-s~dg~-~Lasgs~d~~g~~l~ 80 (1352)
.+.+|...|.++.|++.+..++.++.|+.+.+|+...+. .+..+...+...+.. . .+++. .+...+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 130 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASS--------- 130 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccC---------
Confidence 467899999999999999999999999999999998876 666665432211111 1 22332 111111
Q ss_pred cccCCceEEEEEcCCeEEEEEcCC-ccccccccccccccCCCCeeeeeecCCCCeEEEEEec-CcEE-EEEeeCCccccc
Q 000685 81 AMRGGSVKQVNFYDDDVRFWQLWR-NRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCV-NKAI-FLDLVTMRGRDI 157 (1352)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrlWDl~t-~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~-D~~I-~wDl~t~~~~~i 157 (1352)
..|+.+++|+... .... ..... |...|..++|+|+++ +++.++. ++.+ .|+..... .+
T Consensus 131 -----------~~d~~~~~~~~~~~~~~~----~~~~~-~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~ 191 (466)
T COG2319 131 -----------SLDGTVKLWDLSTPGKLI----RTLEG-HSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGK--PL 191 (466)
T ss_pred -----------CCCccEEEEEecCCCeEE----EEEec-CcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCc--eE
Confidence 1488999999987 3222 22333 377889999999998 6777764 6666 66777643 24
Q ss_pred cccccCCCCeEEEEEeeccccCCCC-EEEEEECCCcEEEEECCCCeEEE-EEecCCCCCeeEEEEeeeCCCCCEEEEEeC
Q 000685 158 PKQELDNKSLVCMEFLSRSAVGDVP-LVAFGSSDGVIRVLSMISWKLVR-RYTGGHKGSISCLMTFMASSGEALLVSGGS 235 (1352)
Q Consensus 158 ~~~~~h~~~V~~vaf~P~s~Spdg~-~LasGs~DGtIrIWDl~t~~~i~-~l~~gH~~~V~slawf~~s~dg~~LaSgS~ 235 (1352)
.....|...|.+++| ++++. .+++++.|+.|++||...+..+. .+. +|...+ ... +++++..+++++.
T Consensus 192 ~~~~~~~~~v~~~~~-----~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~-~~~---~~~~~~~~~~~~~ 261 (466)
T COG2319 192 STLAGHTDPVSSLAF-----SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS-GHSDSV-VSS---FSPDGSLLASGSS 261 (466)
T ss_pred EeeccCCCceEEEEE-----cCCcceEEEEecCCCcEEEEECCCCcEEeeecC-CCCcce-eEe---ECCCCCEEEEecC
Confidence 445668999999999 56777 55555999999999998887777 454 887775 333 6888889999999
Q ss_pred CCcEEEEeCCCCCc-cceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccC
Q 000685 236 DGLLILWSADHGQD-SRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHS 314 (1352)
Q Consensus 236 DGtVrVWDl~tg~~-~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs 314 (1352)
|+.+++|++..... ... +.+|...|.++.|+| ++..+++++.|+.+++||..+........ ...|.
T Consensus 262 d~~~~~~~~~~~~~~~~~------~~~~~~~v~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~~~~~ 328 (466)
T COG2319 262 DGTIRLWDLRSSSSLLRT------LSGHSSSVLSVAFSP---DGKLLASGSSDGTVRLWDLETGKLLSSLT----LKGHE 328 (466)
T ss_pred CCcEEEeeecCCCcEEEE------EecCCccEEEEEECC---CCCEEEEeeCCCcEEEEEcCCCceEEEee----ecccC
Confidence 99999999987664 221 267889999999999 67788889999999999998877666532 24677
Q ss_pred CceeEEEeCCCCC-EEEE-ecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEE-EE
Q 000685 315 VASWCHPRAPNLD-ILTC-VKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVAT-GT 389 (1352)
Q Consensus 315 ~~V~svafspdg~-lLS~-s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLat-Gs 389 (1352)
..+..+.|.+++. ++.+ ..|+. +|++.... ........ . .+..+.+.+ + ..+.. +.
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---------------~~~~~~~~-~-~~~~~~~~~-~-~~~~~~~~ 389 (466)
T COG2319 329 GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK---------------PLKTLEGH-S-NVLSVSFSP-D-GRVVSSGS 389 (466)
T ss_pred CceEEEEECCCCCEEEEeecCCCcEEeeecCCCc---------------eeEEecCC-c-eEEEEEECC-C-CCEEEEec
Confidence 7788888843323 4444 46654 67776431 01111111 1 278899988 6 54555 78
Q ss_pred CCCeEEEEecCCC
Q 000685 390 NVGVIISEFDPRS 402 (1352)
Q Consensus 390 ~DG~IlriWd~~~ 402 (1352)
.++.+ .+|+...
T Consensus 390 ~~~~~-~~~~~~~ 401 (466)
T COG2319 390 TDGTV-RLWDLST 401 (466)
T ss_pred CCCce-EEEeccc
Confidence 88886 7998664
No 158
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.65 E-value=3.9e-15 Score=169.40 Aligned_cols=239 Identities=15% Similarity=0.203 Sum_probs=172.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCcE-EEEEe-------------------ccCccceEEec---cccceeEecccccCCCcc
Q 000685 23 HPWLVTADASDHVSVWNWEHRQV-IYELK-------------------AGGVDQRRLVG---AKLEKLAEGELEHKGKPT 79 (1352)
Q Consensus 23 g~~LaTgs~DG~VrVWDl~tg~~-i~t~~-------------------~~~~~~i~~vs---~dg~~Lasgs~d~~g~~l 79 (1352)
|+++|.|..|..|.|||+.-... ...+. .+|++.+..+. .....|++|+
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgs-------- 263 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGS-------- 263 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecC--------
Confidence 56999999999999999863211 11111 13444444444 2234556654
Q ss_pred ccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEE-EeeCCcccccc
Q 000685 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIP 158 (1352)
Q Consensus 80 ~~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~w-Dl~t~~~~~i~ 158 (1352)
.|.+|++||+.++++. ....||...|.++.|+|....+|++|+.|+.+.+ |.+.... ..
T Consensus 264 -------------aD~TV~lWD~~~g~p~-----~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~--s~ 323 (463)
T KOG0270|consen 264 -------------ADKTVKLWDVDTGKPK-----SSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN--SG 323 (463)
T ss_pred -------------CCceEEEEEcCCCCcc-----eehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc--cC
Confidence 6899999999999985 4455779999999999999889999999999977 8764221 11
Q ss_pred ccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCC
Q 000685 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDG 237 (1352)
Q Consensus 159 ~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~-~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DG 237 (1352)
..-.-.+.|-.++|.|. ....++++++||+|+-+|++.. +++.++. .|.+.|.+++. +.....++++++.|+
T Consensus 324 ~~wk~~g~VEkv~w~~~----se~~f~~~tddG~v~~~D~R~~~~~vwt~~-AHd~~ISgl~~--n~~~p~~l~t~s~d~ 396 (463)
T KOG0270|consen 324 KEWKFDGEVEKVAWDPH----SENSFFVSTDDGTVYYFDIRNPGKPVWTLK-AHDDEISGLSV--NIQTPGLLSTASTDK 396 (463)
T ss_pred ceEEeccceEEEEecCC----CceeEEEecCCceEEeeecCCCCCceeEEE-eccCCcceEEe--cCCCCcceeeccccc
Confidence 11223568889999653 3456888899999999999975 8888887 99999999982 556677999999999
Q ss_pred cEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEE
Q 000685 238 LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELR 302 (1352)
Q Consensus 238 tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~ 302 (1352)
.|++|++..........+.+.+ +...|.++.| +....++.||..+.++|||+.+...++
T Consensus 397 ~Vklw~~~~~~~~~v~~~~~~~----~rl~c~~~~~--~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 397 VVKLWKFDVDSPKSVKEHSFKL----GRLHCFALDP--DVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred eEEEEeecCCCCcccccccccc----cceeecccCC--CcceEEEecCccceEEEeecccChhHH
Confidence 9999999764432111111111 1255667777 356688889998999999998776544
No 159
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.65 E-value=3.7e-15 Score=166.30 Aligned_cols=210 Identities=18% Similarity=0.225 Sum_probs=163.8
Q ss_pred ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCC----------------CeEEEEEecCCCCCeeEEEEeeeC
Q 000685 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS----------------WKLVRRYTGGHKGSISCLMTFMAS 224 (1352)
Q Consensus 161 ~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t----------------~~~i~~l~~gH~~~V~slawf~~s 224 (1352)
..|.+.++.+.-.+ -++..+.++=+..|.|.|||+.. .+.+.++. +|...-+.++|. +
T Consensus 148 i~h~g~~NRvr~~~---~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~-ghk~EGy~LdWS--p 221 (440)
T KOG0302|consen 148 IPHYGGINRVRVSR---LGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFN-GHKGEGYGLDWS--P 221 (440)
T ss_pred cccccccceeeecc---cCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEec-ccCccceeeecc--c
Confidence 34555666665532 12445666667899999999852 25566776 899999999863 2
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCC---eEE
Q 000685 225 SGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSF---KEL 301 (1352)
Q Consensus 225 ~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg---~~l 301 (1352)
.....|+||..-+.|++|...++..... ...+.+|...|-.++|+|. ....|+|||.||+|+|||++.+ .++
T Consensus 222 ~~~g~LlsGDc~~~I~lw~~~~g~W~vd---~~Pf~gH~~SVEDLqWSpt--E~~vfaScS~DgsIrIWDiRs~~~~~~~ 296 (440)
T KOG0302|consen 222 IKTGRLLSGDCVKGIHLWEPSTGSWKVD---QRPFTGHTKSVEDLQWSPT--EDGVFASCSCDGSIRIWDIRSGPKKAAV 296 (440)
T ss_pred ccccccccCccccceEeeeeccCceeec---CccccccccchhhhccCCc--cCceEEeeecCceEEEEEecCCCcccee
Confidence 2334578888889999999998765332 3346789999999999994 6789999999999999999988 344
Q ss_pred EEecCCCcccccCCceeEEEeCCCCCEE-EEecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEe
Q 000685 302 RRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAH 378 (1352)
Q Consensus 302 ~~~~~~~~l~~hs~~V~svafspdg~lL-S~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~s 378 (1352)
.+ ..|...|+.+.|+.+-.+| +|+.||+ |||++.- +...++..|..|.. +|+||.|+
T Consensus 297 ~~-------kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~------------~~~~pVA~fk~Hk~-pItsieW~ 356 (440)
T KOG0302|consen 297 ST-------KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQF------------KSGQPVATFKYHKA-PITSIEWH 356 (440)
T ss_pred Ee-------eccCCceeeEEccCCcceeeecCCCceEEEEEhhhc------------cCCCcceeEEeccC-CeeEEEec
Confidence 43 6899999999999887755 6778886 8999854 23467889999998 99999999
Q ss_pred cCCCcEEEEEECCCeEEEEecCCC
Q 000685 379 SLQPHLVATGTNVGVIISEFDPRS 402 (1352)
Q Consensus 379 p~~~~lLatGs~DG~IlriWd~~~ 402 (1352)
|.+...|++++.|..| .+||+.-
T Consensus 357 p~e~s~iaasg~D~Qi-tiWDlsv 379 (440)
T KOG0302|consen 357 PHEDSVIAASGEDNQI-TIWDLSV 379 (440)
T ss_pred cccCceEEeccCCCcE-EEEEeec
Confidence 9988889999999997 7999764
No 160
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=9e-16 Score=191.17 Aligned_cols=245 Identities=16% Similarity=0.221 Sum_probs=185.2
Q ss_pred CCCeeeeeecCCCCe---EEEEEecCcEE-EEEeeC----CccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCC
Q 000685 120 TSGFASPPPSTKGRH---FLVICCVNKAI-FLDLVT----MRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDG 191 (1352)
Q Consensus 120 ~~~V~slafspdg~~---lLasgs~D~~I-~wDl~t----~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DG 191 (1352)
...++.++|.+.+.. +|+.|.+||.| .||... .+...+.....|.+.|..+.|.+. .++++++|++||
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~----q~nlLASGa~~g 139 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPF----QGNLLASGADDG 139 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeecccc----CCceeeccCCCC
Confidence 556889999887765 69999999988 556543 333455667889999999999431 345999999999
Q ss_pred cEEEEECCCCeEEEEE-ecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccc--cceEE
Q 000685 192 VIRVLSMISWKLVRRY-TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHD--GGVVA 268 (1352)
Q Consensus 192 tIrIWDl~t~~~i~~l-~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~--~~V~s 268 (1352)
.|.|||+.+-+.-... .......|.|++| +....+.|++++.+|++.|||++..+.+-. +..|. ..+..
T Consensus 140 eI~iWDlnn~~tP~~~~~~~~~~eI~~lsW--NrkvqhILAS~s~sg~~~iWDlr~~~pii~------ls~~~~~~~~S~ 211 (1049)
T KOG0307|consen 140 EILIWDLNKPETPFTPGSQAPPSEIKCLSW--NRKVSHILASGSPSGRAVIWDLRKKKPIIK------LSDTPGRMHCSV 211 (1049)
T ss_pred cEEEeccCCcCCCCCCCCCCCcccceEecc--chhhhHHhhccCCCCCceeccccCCCcccc------cccCCCccceee
Confidence 9999999864433333 1124578999998 566778999999999999999998765433 23332 34788
Q ss_pred EEeeccCCCCCEEEEEECCC---cEEEEECCCCe-EEEEecCCCcccccCCceeEEEeCCCC-C-EEEEecCCe--EEec
Q 000685 269 VELSRVMGGSPQLITIGADK---TLAIWDTVSFK-ELRRIKPVPKLACHSVASWCHPRAPNL-D-ILTCVKDSH--IWAI 340 (1352)
Q Consensus 269 lafsp~~~dg~~LaSgs~Dg---tV~IWDl~tg~-~l~~~~~~~~l~~hs~~V~svafspdg-~-lLS~s~Dg~--IWDi 340 (1352)
++||| ++...|+++++|. .|.+||++.-. .++ .+.+|...|.++.|++.+ + +|+++.|++ +|+.
T Consensus 212 l~WhP--~~aTql~~As~dd~~PviqlWDlR~assP~k------~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~ 283 (1049)
T KOG0307|consen 212 LAWHP--DHATQLLVASGDDSAPVIQLWDLRFASSPLK------ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNP 283 (1049)
T ss_pred eeeCC--CCceeeeeecCCCCCceeEeecccccCCchh------hhcccccceeeeccCCCCchhhhcccCCCCeeEecC
Confidence 99999 4667777777654 58999988533 333 368999999999999976 4 558999997 6999
Q ss_pred cCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCC
Q 000685 341 EHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1352)
Q Consensus 341 ~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~ 401 (1352)
+++.. +..+...++ .+..+.|+|.++.++++.+.||.| .|+.+.
T Consensus 284 ~tgEv---------------l~~~p~~~n-W~fdv~w~pr~P~~~A~asfdgkI-~I~sl~ 327 (1049)
T KOG0307|consen 284 NTGEV---------------LGELPAQGN-WCFDVQWCPRNPSVMAAASFDGKI-SIYSLQ 327 (1049)
T ss_pred CCceE---------------eeecCCCCc-ceeeeeecCCCcchhhhheeccce-eeeeee
Confidence 87632 334444444 899999999999999999999997 566544
No 161
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.64 E-value=4.5e-15 Score=168.91 Aligned_cols=237 Identities=17% Similarity=0.189 Sum_probs=177.1
Q ss_pred eEEEEEecCcEE-EEEeeCCcc--cc-----------------ccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcE
Q 000685 134 HFLVICCVNKAI-FLDLVTMRG--RD-----------------IPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVI 193 (1352)
Q Consensus 134 ~lLasgs~D~~I-~wDl~t~~~--~~-----------------i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtI 193 (1352)
+++++|+.+..| +||+.-... .+ -....+|.+.|..+.|.- -..+.|++||.|.+|
T Consensus 193 NyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~----~~~nVLaSgsaD~TV 268 (463)
T KOG0270|consen 193 NYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNR----NFRNVLASGSADKTV 268 (463)
T ss_pred ceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcc----ccceeEEecCCCceE
Confidence 399999999988 886532110 00 001235777888888832 235689999999999
Q ss_pred EEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeec
Q 000685 194 RVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSR 273 (1352)
Q Consensus 194 rIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp 273 (1352)
++||+.++++...+. .|.+.|.++.| ++.....|++||.|++|++.|.+....... .+ .-.+.|-.++|+|
T Consensus 269 ~lWD~~~g~p~~s~~-~~~k~Vq~l~w--h~~~p~~LLsGs~D~~V~l~D~R~~~~s~~-----~w-k~~g~VEkv~w~~ 339 (463)
T KOG0270|consen 269 KLWDVDTGKPKSSIT-HHGKKVQTLEW--HPYEPSVLLSGSYDGTVALKDCRDPSNSGK-----EW-KFDGEVEKVAWDP 339 (463)
T ss_pred EEEEcCCCCcceehh-hcCCceeEEEe--cCCCceEEEeccccceEEeeeccCccccCc-----eE-EeccceEEEEecC
Confidence 999999999998887 89999999997 577788999999999999999995332221 01 2346699999999
Q ss_pred cCCCCCEEEEEECCCcEEEEECCCC-eEEEEecCCCcccccCCceeEEEeCCCCC--EEEEecCCe--EEeccCCccccc
Q 000685 274 VMGGSPQLITIGADKTLAIWDTVSF-KELRRIKPVPKLACHSVASWCHPRAPNLD--ILTCVKDSH--IWAIEHPTYSAL 348 (1352)
Q Consensus 274 ~~~dg~~LaSgs~DgtV~IWDl~tg-~~l~~~~~~~~l~~hs~~V~svafspdg~--lLS~s~Dg~--IWDi~t~~~~~~ 348 (1352)
. ....++++.+||+|+-+|++.. +++.+ +..|...|.+++++..-. +.++|.|+. +|++.......
T Consensus 340 ~--se~~f~~~tddG~v~~~D~R~~~~~vwt------~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~- 410 (463)
T KOG0270|consen 340 H--SENSFFVSTDDGTVYYFDIRNPGKPVWT------LKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS- 410 (463)
T ss_pred C--CceeEEEecCCceEEeeecCCCCCceeE------EEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcc-
Confidence 4 6678899999999999999874 67776 689999999999998744 447888885 89987432100
Q ss_pred ccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCCCCCc
Q 000685 349 TRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAV 406 (1352)
Q Consensus 349 ~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~i 406 (1352)
+....+ .-.+..|.++.|+....++.|+..+. +++||+....++
T Consensus 411 ----------v~~~~~---~~~rl~c~~~~~~~a~~la~GG~k~~-~~vwd~~~~~~V 454 (463)
T KOG0270|consen 411 ----------VKEHSF---KLGRLHCFALDPDVAFTLAFGGEKAV-LRVWDIFTNSPV 454 (463)
T ss_pred ----------cccccc---cccceeecccCCCcceEEEecCccce-EEEeecccChhH
Confidence 000011 11257889999988899999999995 599998765443
No 162
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=1.8e-14 Score=157.37 Aligned_cols=284 Identities=16% Similarity=0.165 Sum_probs=198.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec--cccceeEecccccCCCccccccCCceEEEE
Q 000685 14 IVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAMRGGSVKQVN 91 (1352)
Q Consensus 14 V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~~l~~g~V~sVa 91 (1352)
-.|+.|++.|.+||+|+.||.|.|||+.|...-+.+. .|...+.+++ ++|+.|.+.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~ls-aH~~pi~sl~WS~dgr~LltsS-------------------- 84 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLS-AHVRPITSLCWSRDGRKLLTSS-------------------- 84 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhh-ccccceeEEEecCCCCEeeeec--------------------
Confidence 7899999999999999999999999999877555554 6677777777 8999999887
Q ss_pred EcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEe-cCcEEEEEeeCCccccccccccC--CCCeE
Q 000685 92 FYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICC-VNKAIFLDLVTMRGRDIPKQELD--NKSLV 168 (1352)
Q Consensus 92 F~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs-~D~~I~wDl~t~~~~~i~~~~~h--~~~V~ 168 (1352)
.|..|.+||+..+.+++ .-...++|+.+.|+|..++.++++- ...-++++...+.-..++..... +....
T Consensus 85 -~D~si~lwDl~~gs~l~------rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas 157 (405)
T KOG1273|consen 85 -RDWSIKLWDLLKGSPLK------RIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSAS 157 (405)
T ss_pred -CCceeEEEeccCCCcee------EEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccc
Confidence 68899999999998753 2223678999999997655544443 33344445554333333222111 22233
Q ss_pred EEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCC
Q 000685 169 CMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQ 248 (1352)
Q Consensus 169 ~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~ 248 (1352)
|..| .+.|++|++|...|.+.++|..+.+++..+.......|..+. ++..|+.|+.-+.|+.||.|+++.-.
T Consensus 158 ~~~f-----dr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~---~s~~g~~liiNtsDRvIR~ye~~di~ 229 (405)
T KOG1273|consen 158 HGVF-----DRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQII---VSRKGRFLIINTSDRVIRTYEISDID 229 (405)
T ss_pred cccc-----cCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEE---EeccCcEEEEecCCceEEEEehhhhc
Confidence 4456 678999999999999999999999999887622225566664 89999999999999999999986311
Q ss_pred cc---ceecccccccc--cccceEEEEeeccCCCCCEEEEEEC-CCcEEEEECCCCeEEEEecCCCcccccC-CceeEEE
Q 000685 249 DS---RELVPKLSLKA--HDGGVVAVELSRVMGGSPQLITIGA-DKTLAIWDTVSFKELRRIKPVPKLACHS-VASWCHP 321 (1352)
Q Consensus 249 ~~---~~~~~~~~l~g--H~~~V~slafsp~~~dg~~LaSgs~-DgtV~IWDl~tg~~l~~~~~~~~l~~hs-~~V~sva 321 (1352)
.. .+..+...+.. ..-.-++++|+. +|.|++.++. -..++||.-..|..++. +.|.. .....+.
T Consensus 230 ~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~---dgeYv~a~s~~aHaLYIWE~~~GsLVKI------LhG~kgE~l~DV~ 300 (405)
T KOG1273|consen 230 DEGRDGEVEPEHKLQDVVNKLQWKKCCFSG---DGEYVCAGSARAHALYIWEKSIGSLVKI------LHGTKGEELLDVN 300 (405)
T ss_pred ccCccCCcChhHHHHHHHhhhhhhheeecC---CccEEEeccccceeEEEEecCCcceeee------ecCCchhheeecc
Confidence 10 01111111111 122235678886 7889887774 45699999999999888 44544 3445788
Q ss_pred eCCCCCEEEEecCC--eEEeccC
Q 000685 322 RAPNLDILTCVKDS--HIWAIEH 342 (1352)
Q Consensus 322 fspdg~lLS~s~Dg--~IWDi~t 342 (1352)
|+|-..+++.-..| .||....
T Consensus 301 whp~rp~i~si~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 301 WHPVRPIIASIASGVVYIWAVVQ 323 (405)
T ss_pred cccceeeeeeccCCceEEEEeec
Confidence 99887766443444 4787653
No 163
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=2.2e-14 Score=175.68 Aligned_cols=299 Identities=14% Similarity=0.205 Sum_probs=194.4
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCCceEEE
Q 000685 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQV 90 (1352)
Q Consensus 11 s~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~sV 90 (1352)
...-..+.|||-.+.+++++..-.|+|||++.++++..|..+...
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~----------------------------------- 1108 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFP----------------------------------- 1108 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCC-----------------------------------
Confidence 344667889999999999988889999999999988888754311
Q ss_pred EEcCCeEEEEEcCCccccccccccccccCCCCeeeeeec-CCCCeEEEEEecCcEE-EE-EeeCC--cccccccc-----
Q 000685 91 NFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPS-TKGRHFLVICCVNKAI-FL-DLVTM--RGRDIPKQ----- 160 (1352)
Q Consensus 91 aF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafs-pdg~~lLasgs~D~~I-~w-Dl~t~--~~~~i~~~----- 160 (1352)
...|+.+.+- .+...++.+|+.||.| +| |+.+. +.+.+.-.
T Consensus 1109 -----------------------------~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~ 1159 (1387)
T KOG1517|consen 1109 -----------------------------DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSD 1159 (1387)
T ss_pred -----------------------------CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccc
Confidence 1122222221 1222255555555555 33 44332 11111000
Q ss_pred --ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCc
Q 000685 161 --ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL 238 (1352)
Q Consensus 161 --~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGt 238 (1352)
....+.-.-++|. ....+|+++++-..|+|||.....++..+..+.+..|+++. .....|+.|+.|..||.
T Consensus 1160 ~~~~~r~~~~v~dWq-----Q~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS--~~~~~gn~i~AGfaDGs 1232 (1387)
T KOG1517|consen 1160 QLPGARGTGLVVDWQ-----QQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALS--ADLVHGNIIAAGFADGS 1232 (1387)
T ss_pred cCccCCCCCeeeehh-----hhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeec--ccccCCceEEEeecCCc
Confidence 0011111335673 34445666656889999999998888888767778888886 24566899999999999
Q ss_pred EEEEeCCCCCccceecccccccccccc--eEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccC--
Q 000685 239 LILWSADHGQDSRELVPKLSLKAHDGG--VVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHS-- 314 (1352)
Q Consensus 239 VrVWDl~tg~~~~~~~~~~~l~gH~~~--V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs-- 314 (1352)
||+||.+....- ......+.|... |..+.+.+. +-..|++|+.||.|++||++... ...+- ....|.
T Consensus 1233 vRvyD~R~a~~d---s~v~~~R~h~~~~~Iv~~slq~~--G~~elvSgs~~G~I~~~DlR~~~-~e~~~---~iv~~~~y 1303 (1387)
T KOG1517|consen 1233 VRVYDRRMAPPD---SLVCVYREHNDVEPIVHLSLQRQ--GLGELVSGSQDGDIQLLDLRMSS-KETFL---TIVAHWEY 1303 (1387)
T ss_pred eEEeecccCCcc---ccceeecccCCcccceeEEeecC--CCcceeeeccCCeEEEEecccCc-ccccc---eeeecccc
Confidence 999999865321 123346778877 999999882 23369999999999999999742 22211 122222
Q ss_pred C-ceeEEEeCCCCCEEEEecCC--eEEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECC
Q 000685 315 V-ASWCHPRAPNLDILTCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNV 391 (1352)
Q Consensus 315 ~-~V~svafspdg~lLS~s~Dg--~IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~D 391 (1352)
+ .++++..|++..++++|.-+ .||++........ +.-..|-+.....+.|++|||. ..++|+|+.|
T Consensus 1304 Gs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~----------k~n~~F~~q~~gs~scL~FHP~-~~llAaG~~D 1372 (1387)
T KOG1517|consen 1304 GSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNII----------KYNPGFMGQRIGSVSCLAFHPH-RLLLAAGSAD 1372 (1387)
T ss_pred CccceeeeeccCCCeeeecCcceEEEEecChhhhccc----------ccCcccccCcCCCcceeeecch-hHhhhhccCC
Confidence 2 58899999999999766545 3899874321111 1112233444457899999994 6779999999
Q ss_pred CeEEEEecCC
Q 000685 392 GVIISEFDPR 401 (1352)
Q Consensus 392 G~IlriWd~~ 401 (1352)
..| .+|...
T Consensus 1373 s~V-~iYs~~ 1381 (1387)
T KOG1517|consen 1373 STV-SIYSCE 1381 (1387)
T ss_pred ceE-EEeecC
Confidence 997 677543
No 164
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.63 E-value=6.2e-15 Score=159.46 Aligned_cols=202 Identities=15% Similarity=0.163 Sum_probs=155.0
Q ss_pred CCeeeeeecCCCCeEEEEEecCcEEEEEeeCCccc--ccc--ccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEE
Q 000685 121 SGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGR--DIP--KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVL 196 (1352)
Q Consensus 121 ~~V~slafspdg~~lLasgs~D~~I~wDl~t~~~~--~i~--~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIW 196 (1352)
+.|.|+.|.|++. .+++-.+..+++|++..+... .+. ....+....++-+|+| +.+++.+++. .|++++.|
T Consensus 124 g~i~cvew~Pns~-klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~Wsp---HHdgnqv~tt-~d~tl~~~ 198 (370)
T KOG1007|consen 124 GKINCVEWEPNSD-KLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSP---HHDGNQVATT-SDSTLQFW 198 (370)
T ss_pred CceeeEEEcCCCC-eeEEeccCceEEEEcccCcchheeecccccccccceecccccCC---CCccceEEEe-CCCcEEEE
Confidence 4789999999987 777777888889988766432 111 1122456677888976 5688888776 68899999
Q ss_pred ECCCCeEEEEEecCCCCCeeEEEEeeeCCC-CCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccC
Q 000685 197 SMISWKLVRRYTGGHKGSISCLMTFMASSG-EALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVM 275 (1352)
Q Consensus 197 Dl~t~~~i~~l~~gH~~~V~slawf~~s~d-g~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~ 275 (1352)
|+++.++...+..+|...|..+. |+|+ ..+|+||+.||.||+||.+..+ .|.+++.+|..+|+++.|+|.
T Consensus 199 D~RT~~~~~sI~dAHgq~vrdlD---fNpnkq~~lvt~gDdgyvriWD~R~tk-----~pv~el~~HsHWvW~VRfn~~- 269 (370)
T KOG1007|consen 199 DLRTMKKNNSIEDAHGQRVRDLD---FNPNKQHILVTCGDDGYVRIWDTRKTK-----FPVQELPGHSHWVWAVRFNPE- 269 (370)
T ss_pred Eccchhhhcchhhhhcceeeecc---CCCCceEEEEEcCCCccEEEEeccCCC-----ccccccCCCceEEEEEEecCc-
Confidence 99999988888889999999998 4554 5678999999999999998765 256678999999999999995
Q ss_pred CCCCEEEEEECCCcEEEEECCCCeEE------------------EEec-----CCCcccccCCceeEEEeCCCCCEE--E
Q 000685 276 GGSPQLITIGADKTLAIWDTVSFKEL------------------RRIK-----PVPKLACHSVASWCHPRAPNLDIL--T 330 (1352)
Q Consensus 276 ~dg~~LaSgs~DgtV~IWDl~tg~~l------------------~~~~-----~~~~l~~hs~~V~svafspdg~lL--S 330 (1352)
...+|++||.|..|.+|-..+-..- .+.+ ....+..|...|++++||.-...+ +
T Consensus 270 -hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFAS 348 (370)
T KOG1007|consen 270 -HDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFAS 348 (370)
T ss_pred -cceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEE
Confidence 5679999999999999976431100 0001 122467899999999999877744 5
Q ss_pred EecCCeE
Q 000685 331 CVKDSHI 337 (1352)
Q Consensus 331 ~s~Dg~I 337 (1352)
-|.||++
T Consensus 349 LSYDGRv 355 (370)
T KOG1007|consen 349 LSYDGRV 355 (370)
T ss_pred eccCceE
Confidence 6899984
No 165
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.62 E-value=1.7e-13 Score=159.97 Aligned_cols=151 Identities=17% Similarity=0.268 Sum_probs=114.4
Q ss_pred cceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEE-EecCCCcccccCCceeEEEeCCCC-C-EEEEecCCe--EE
Q 000685 264 GGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELR-RIKPVPKLACHSVASWCHPRAPNL-D-ILTCVKDSH--IW 338 (1352)
Q Consensus 264 ~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~-~~~~~~~l~~hs~~V~svafspdg-~-lLS~s~Dg~--IW 338 (1352)
..|+.+.|.|. |...|+.+++||.|++|.+..+..-. ...+...+..|...|+++.|||-. + +++++.|.+ ||
T Consensus 628 t~vtDl~WdPF--D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lW 705 (1012)
T KOG1445|consen 628 TLVTDLHWDPF--DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELW 705 (1012)
T ss_pred ceeeecccCCC--ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeee
Confidence 45788999996 77899999999999999997654222 223344578999999999999963 3 447888886 89
Q ss_pred eccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCCCCC-ccccCCCCCCCC
Q 000685 339 AIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPA-VAPLPTPSGSRD 417 (1352)
Q Consensus 339 Di~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~-i~~l~~~s~s~~ 417 (1352)
|+.+.+ ....+.+|.+ .|.+++|+| ++.++|+-+.||.+ |++++++++. +..-..+-+.+.
T Consensus 706 Dl~~~~---------------~~~~l~gHtd-qIf~~AWSp-dGr~~AtVcKDg~~-rVy~Prs~e~pv~Eg~gpvgtRg 767 (1012)
T KOG1445|consen 706 DLANAK---------------LYSRLVGHTD-QIFGIAWSP-DGRRIATVCKDGTL-RVYEPRSREQPVYEGKGPVGTRG 767 (1012)
T ss_pred ehhhhh---------------hhheeccCcC-ceeEEEECC-CCcceeeeecCceE-EEeCCCCCCCccccCCCCccCcc
Confidence 999753 2346778888 899999999 78889999999997 8999998654 444445555556
Q ss_pred ceEEEEecCeE-EEEEee
Q 000685 418 HSAVYIVEREL-KLVNFQ 434 (1352)
Q Consensus 418 ~~~~~~~~~~l-kl~~fq 434 (1352)
..+.|..++.+ ....|.
T Consensus 768 ARi~wacdgr~viv~Gfd 785 (1012)
T KOG1445|consen 768 ARILWACDGRIVIVVGFD 785 (1012)
T ss_pred eeEEEEecCcEEEEeccc
Confidence 66788888774 334443
No 166
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=7.1e-14 Score=159.56 Aligned_cols=237 Identities=13% Similarity=0.145 Sum_probs=172.8
Q ss_pred CCCeeeeeecCCCCeEEEEEecCcEEEE-EeeCCccccccccccCCCCeEEEEEeeccccCCCC-EEEEEECCCcEEEEE
Q 000685 120 TSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVP-LVAFGSSDGVIRVLS 197 (1352)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~D~~I~w-Dl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~-~LasGs~DGtIrIWD 197 (1352)
.+.|+++.|+|..+ ++.+++.|+.+++ -+.......+........+|.+..| .|+|. .+++++.......||
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f-----~p~G~~~i~~s~rrky~ysyD 286 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEF-----APNGHSVIFTSGRRKYLYSYD 286 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhheeeeeccCccceeee-----cCCCceEEEecccceEEEEee
Confidence 46799999999887 9999999999966 3332222345555666889999999 56887 899999999999999
Q ss_pred CCCCeEEEEE-ecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCC
Q 000685 198 MISWKLVRRY-TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMG 276 (1352)
Q Consensus 198 l~t~~~i~~l-~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~ 276 (1352)
+.+.+..+.- ..++... ++..|..++++++|+..+..|.|.+....+++.+..+ + -.+.|..++|+.
T Consensus 287 le~ak~~k~~~~~g~e~~--~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~------K-ieG~v~~~~fsS--- 354 (514)
T KOG2055|consen 287 LETAKVTKLKPPYGVEEK--SMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF------K-IEGVVSDFTFSS--- 354 (514)
T ss_pred ccccccccccCCCCcccc--hhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee------e-eccEEeeEEEec---
Confidence 9987654322 1244422 3334568999999999999999999999998876652 2 346699999997
Q ss_pred CCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEEEEecC-Ce--EEeccCCcccccccCcc
Q 000685 277 GSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKD-SH--IWAIEHPTYSALTRPLC 353 (1352)
Q Consensus 277 dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lLS~s~D-g~--IWDi~t~~~~~~~~~l~ 353 (1352)
+++.|+.++.+|.|.+||++...++++|.....+ .-++++.++++.++++|.| |- |||.++-..
T Consensus 355 dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v-----~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~-------- 421 (514)
T KOG2055|consen 355 DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV-----HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFA-------- 421 (514)
T ss_pred CCcEEEEEcCCceEEEEecCCcceEEEEeecCcc-----ceeeeeecCCCceEEeccCcceEEEeccchhhc--------
Confidence 7899999999999999999999999987432222 2247888899999976655 43 787653211
Q ss_pred ccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEEC
Q 000685 354 ELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTN 390 (1352)
Q Consensus 354 ~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~ 390 (1352)
....+|+..+..-.. .|+.|.|++ +..++|.+|.
T Consensus 422 -s~~PkPik~~dNLtt-~Itsl~Fn~-d~qiLAiaS~ 455 (514)
T KOG2055|consen 422 -STNPKPIKTVDNLTT-AITSLQFNH-DAQILAIASR 455 (514)
T ss_pred -cCCCCchhhhhhhhe-eeeeeeeCc-chhhhhhhhh
Confidence 112233333333333 799999999 6777776664
No 167
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=4.4e-14 Score=154.48 Aligned_cols=278 Identities=13% Similarity=0.177 Sum_probs=188.2
Q ss_pred eEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCC
Q 000685 167 LVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH 246 (1352)
Q Consensus 167 V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~t 246 (1352)
..|+.| ++.|.+|++|+.||.|.|||+.|...-+.+. +|..+|+|++| +++|+.|+|+|.|..|.+||+..
T Consensus 26 a~~~~F-----s~~G~~lAvGc~nG~vvI~D~~T~~iar~ls-aH~~pi~sl~W---S~dgr~LltsS~D~si~lwDl~~ 96 (405)
T KOG1273|consen 26 AECCQF-----SRWGDYLAVGCANGRVVIYDFDTFRIARMLS-AHVRPITSLCW---SRDGRKLLTSSRDWSIKLWDLLK 96 (405)
T ss_pred cceEEe-----ccCcceeeeeccCCcEEEEEccccchhhhhh-ccccceeEEEe---cCCCCEeeeecCCceeEEEeccC
Confidence 788999 7889999999999999999999988766665 99999999994 99999999999999999999999
Q ss_pred CCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCC
Q 000685 247 GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNL 326 (1352)
Q Consensus 247 g~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg 326 (1352)
|.+++.+ ....+|+.+.|+|. +.+..+..-.+..-.+-++...+ ++.-+...-..-...-.+..|.+.|
T Consensus 97 gs~l~ri-------rf~spv~~~q~hp~--k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g 165 (405)
T KOG1273|consen 97 GSPLKRI-------RFDSPVWGAQWHPR--KRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRG 165 (405)
T ss_pred CCceeEE-------EccCccceeeeccc--cCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCC
Confidence 9877652 24678999999993 44555555455555555655422 2221111111111112244688889
Q ss_pred CEE-EEecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCCC
Q 000685 327 DIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSL 403 (1352)
Q Consensus 327 ~lL-S~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~~~ 403 (1352)
+++ +|...|. +++..+.. .+..++-.....|..+.++. .+..+++.+.|.+| |.++.++.
T Consensus 166 ~yIitGtsKGkllv~~a~t~e---------------~vas~rits~~~IK~I~~s~-~g~~liiNtsDRvI-R~ye~~di 228 (405)
T KOG1273|consen 166 KYIITGTSKGKLLVYDAETLE---------------CVASFRITSVQAIKQIIVSR-KGRFLIINTSDRVI-RTYEISDI 228 (405)
T ss_pred CEEEEecCcceEEEEecchhe---------------eeeeeeechheeeeEEEEec-cCcEEEEecCCceE-EEEehhhh
Confidence 866 7777786 67777542 23344444333688888888 67889999999997 78875531
Q ss_pred CCccccCCCCCCCCceEEEEecCeEEEEEeeeccCCCCCCCCCcccccCCcccCCCchhhhhhhccccccccCCCCCccE
Q 000685 404 PAVAPLPTPSGSRDHSAVYIVERELKLVNFQLSSAANPSLGNNGSLSETGRLKGDLPDALQIKQIKKHISTPVPHDSYSI 483 (1352)
Q Consensus 404 p~i~~l~~~s~s~~~~~~~~~~~~lkl~~fq~~~~~n~~~g~~~~~s~~G~~~~~~~~~l~v~~~~r~i~t~~~~e~~s~ 483 (1352)
... + .+|. +......+.+++...|. .
T Consensus 229 ~~~-------~------------------------------------r~~e--------~e~~~K~qDvVNk~~Wk---~ 254 (405)
T KOG1273|consen 229 DDE-------G------------------------------------RDGE--------VEPEHKLQDVVNKLQWK---K 254 (405)
T ss_pred ccc-------C------------------------------------ccCC--------cChhHHHHHHHhhhhhh---h
Confidence 100 0 0111 11112223345555554 5
Q ss_pred EEEcCCCCEEEEEECCCCcEEEEEeCCceEee-----ccc-eeEEEeccCCCeEEEEe
Q 000685 484 LSVSSSGKYLAVVWPDIPYFSVYKVSDWSIVD-----SGS-ARLLAWDTCRDRFAILE 535 (1352)
Q Consensus 484 l~~SpdGrylavv~~~~g~y~Iy~i~~~~~i~-----~G~-~~~~aWs~~~~~fAvl~ 535 (1352)
+.||.+|.|+...+.....++||..+...++. .|. ..++.|++-+...+-+.
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~ 312 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIA 312 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeecc
Confidence 88999999997766677788899876544432 322 56788998766555553
No 168
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=3.3e-14 Score=155.35 Aligned_cols=221 Identities=16% Similarity=0.198 Sum_probs=162.8
Q ss_pred cccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECC----CCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeC
Q 000685 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI----SWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS 235 (1352)
Q Consensus 160 ~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~----t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~ 235 (1352)
...|.+-|.|+.| ...|+.+++|+.|++|+|||.+ ++.+..... .|.+.|..+.|. .+.-|+.+++||.
T Consensus 9 ~s~h~DlihdVs~-----D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wr-ah~~Si~rV~WA-hPEfGqvvA~cS~ 81 (361)
T KOG2445|consen 9 DSGHKDLIHDVSF-----DFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWR-AHDGSIWRVVWA-HPEFGQVVATCSY 81 (361)
T ss_pred ccCCcceeeeeee-----cccCceeeeccCCCcEEEEeccCCCCceEEeeeEE-ecCCcEEEEEec-CccccceEEEEec
Confidence 4678899999999 7789999999999999999965 356666776 899999999985 6667999999999
Q ss_pred CCcEEEEeCCCC--Cc-cceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCC----
Q 000685 236 DGLLILWSADHG--QD-SRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVP---- 308 (1352)
Q Consensus 236 DGtVrVWDl~tg--~~-~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~---- 308 (1352)
|++++||.-... +. -+++....++......|+.+.|.|.+ -|-.|++++.||.+|||+.-+--.+..+....
T Consensus 82 Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~h-lGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~ 160 (361)
T KOG2445|consen 82 DRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKH-LGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQN 160 (361)
T ss_pred CCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchh-cceEEEEeccCcEEEEEecCCccccccchhhhhhhh
Confidence 999999986321 11 12455566677788899999999942 46789999999999999876533333322222
Q ss_pred ---cccccCCceeEEEeCCCC---CEEEEecCC------e--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEE
Q 000685 309 ---KLACHSVASWCHPRAPNL---DILTCVKDS------H--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYC 374 (1352)
Q Consensus 309 ---~l~~hs~~V~svafspdg---~lLS~s~Dg------~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~ 374 (1352)
....+.....|+.|+|.. .+|+.|.|. + ||...... +....+..+..|.+ .|+.
T Consensus 161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~-----------rKw~kva~L~d~~d-pI~d 228 (361)
T KOG2445|consen 161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG-----------RKWLKVAELPDHTD-PIRD 228 (361)
T ss_pred ccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc-----------ceeeeehhcCCCCC-ccee
Confidence 223455667799999752 366554443 2 78766431 11123445567777 9999
Q ss_pred EEEecCCC---cEEEEEECCCeEEEEecCCC
Q 000685 375 MVAHSLQP---HLVATGTNVGVIISEFDPRS 402 (1352)
Q Consensus 375 la~sp~~~---~lLatGs~DG~IlriWd~~~ 402 (1352)
++|.|.-+ ++||+++.|| | +||+++.
T Consensus 229 i~wAPn~Gr~y~~lAvA~kDg-v-~I~~v~~ 257 (361)
T KOG2445|consen 229 ISWAPNIGRSYHLLAVATKDG-V-RIFKVKV 257 (361)
T ss_pred eeeccccCCceeeEEEeecCc-E-EEEEEee
Confidence 99999743 6899999999 4 8998774
No 169
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=8.9e-13 Score=161.20 Aligned_cols=372 Identities=12% Similarity=0.136 Sum_probs=242.5
Q ss_pred eeEEecCCCCCEEEEEEcCCCC---EEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEe-------------c-cccc
Q 000685 3 RLKAFRPTNDKIVKIQLHPTHP---WLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV-------------G-AKLE 65 (1352)
Q Consensus 3 ~l~~L~gHs~~V~~lafSPdg~---~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~v-------------s-~dg~ 65 (1352)
.++.|.+|...++.+.+.|... ++++++.||.|++||+..+++++++..+-.-..... . .+-.
T Consensus 49 ~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~ 128 (792)
T KOG1963|consen 49 CITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYS 128 (792)
T ss_pred hhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccce
Confidence 3568899999999999998755 788999999999999999999998874321111111 1 1111
Q ss_pred eeEecccc--cC-------------C---------CccccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCC
Q 000685 66 KLAEGELE--HK-------------G---------KPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTS 121 (1352)
Q Consensus 66 ~Lasgs~d--~~-------------g---------~~l~~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~ 121 (1352)
.+...+.+ .. + +++..-.+|.+..+. .+..+.+|...+.... ........+|.-
T Consensus 129 ~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~-~~~~~~~~~v~~~~~~-~~~~~~~~~Htf 206 (792)
T KOG1963|consen 129 ILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIV-HMCKIHIYFVPKHTKH-TSSRDITVHHTF 206 (792)
T ss_pred eeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEE-EeeeEEEEEeccccee-eccchhhhhhcc
Confidence 11111100 00 0 111111123444444 4777888888875422 122233334466
Q ss_pred CeeeeeecCCCCeEEEEEecCcEE-EE-Eee-CCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEEC
Q 000685 122 GFASPPPSTKGRHFLVICCVNKAI-FL-DLV-TMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSM 198 (1352)
Q Consensus 122 ~V~slafspdg~~lLasgs~D~~I-~w-Dl~-t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl 198 (1352)
.+++.++||+++ +++++..||.| +| |.. .........+..|.+.|+++.| +++|.+|++|+..|.+.+|.+
T Consensus 207 ~~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~f-----S~~G~~LlSGG~E~VLv~Wq~ 280 (792)
T KOG1963|consen 207 NITCVALSPNER-YLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSF-----SSDGAYLLSGGREGVLVLWQL 280 (792)
T ss_pred cceeEEeccccc-eEEEeccCCcEEEEeccccccccccceEEEecccccceeEE-----ecCCceEeecccceEEEEEee
Confidence 689999999997 88888888877 66 555 3333344456889999999999 789999999999999999999
Q ss_pred CCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCcccee---cccc-c-ccccccceEEEEeec
Q 000685 199 ISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSREL---VPKL-S-LKAHDGGVVAVELSR 273 (1352)
Q Consensus 199 ~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~---~~~~-~-l~gH~~~V~slafsp 273 (1352)
.+++ +++...-.+.|..+. +++++++.+....|+.|.+-...+-.....+ .+.. . -....+-.+.++++|
T Consensus 281 ~T~~--kqfLPRLgs~I~~i~---vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp 355 (792)
T KOG1963|consen 281 ETGK--KQFLPRLGSPILHIV---VSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP 355 (792)
T ss_pred cCCC--cccccccCCeeEEEE---EcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC
Confidence 9988 555546678888886 7899999999999999999987654322221 1100 0 011234467788888
Q ss_pred cCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCC-----cccccCCceeEEEeCCCCCEEEEe---------cCCe---
Q 000685 274 VMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVP-----KLACHSVASWCHPRAPNLDILTCV---------KDSH--- 336 (1352)
Q Consensus 274 ~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~-----~l~~hs~~V~svafspdg~lLS~s---------~Dg~--- 336 (1352)
..+.++-.+..+.|.+||+.+.+.+..+.... .-..+...++.++.+..|.+++.. .||.
T Consensus 356 ---r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~L 432 (792)
T KOG1963|consen 356 ---RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSL 432 (792)
T ss_pred ---CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEE
Confidence 56788889999999999998876555442211 111334456777777778766543 3332
Q ss_pred -EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCC
Q 000685 337 -IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1352)
Q Consensus 337 -IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~ 401 (1352)
+|-...... .+.+ ......+|+...+..+..++......++.+.||.+ ++|-..
T Consensus 433 KFW~~n~~~k------t~~L----~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~-KiW~~~ 487 (792)
T KOG1963|consen 433 KFWQYNPNSK------TFIL----NTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDF-KIWVFT 487 (792)
T ss_pred EEEEEcCCcc------eeEE----EEEEecCCCceeEEEEEecCcccceeEEeccCCeE-EEEEEe
Confidence 576653210 0000 01233567764555555555555589999999997 899654
No 170
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.60 E-value=5e-14 Score=157.97 Aligned_cols=212 Identities=17% Similarity=0.172 Sum_probs=163.4
Q ss_pred cccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCC-------eEEEEEecCCCCCeeEEEEeeeCCCCC
Q 000685 156 DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-------KLVRRYTGGHKGSISCLMTFMASSGEA 228 (1352)
Q Consensus 156 ~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~-------~~i~~l~~gH~~~V~slawf~~s~dg~ 228 (1352)
..+...+|..+|..++|.|. +.+.|++||.|.+|.||++..+ +.+..+. ||...|.-+.| .+.-.+
T Consensus 73 ~~P~v~GHt~~vLDi~w~Pf----nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~-gH~rrVg~V~w--HPtA~N 145 (472)
T KOG0303|consen 73 SYPLVCGHTAPVLDIDWCPF----NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELY-GHQRRVGLVQW--HPTAPN 145 (472)
T ss_pred CCCCccCccccccccccCcc----CCceeecCCCCceEEEEECCCcccccCcccceEEEe-ecceeEEEEee--cccchh
Confidence 45667899999999999763 5678999999999999998643 4456666 99999999997 355578
Q ss_pred EEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCC
Q 000685 229 LLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVP 308 (1352)
Q Consensus 229 ~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~ 308 (1352)
.|+|++.|.+|.+||+.+|+.+-+ +. |.+.|+++.|+. +|.+|++.+.|+.|||||.++++.+..
T Consensus 146 VLlsag~Dn~v~iWnv~tgeali~------l~-hpd~i~S~sfn~---dGs~l~TtckDKkvRv~dpr~~~~v~e----- 210 (472)
T KOG0303|consen 146 VLLSAGSDNTVSIWNVGTGEALIT------LD-HPDMVYSMSFNR---DGSLLCTTCKDKKVRVIDPRRGTVVSE----- 210 (472)
T ss_pred hHhhccCCceEEEEeccCCceeee------cC-CCCeEEEEEecc---CCceeeeecccceeEEEcCCCCcEeee-----
Confidence 999999999999999999986654 45 999999999998 899999999999999999999998876
Q ss_pred cccccCCc-eeEEEeCCCCCEEEEecCC---e---EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCC
Q 000685 309 KLACHSVA-SWCHPRAPNLDILTCVKDS---H---IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQ 381 (1352)
Q Consensus 309 ~l~~hs~~-V~svafspdg~lLS~s~Dg---~---IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~ 381 (1352)
..+|.+. -..+.|-.+|.+++.|... + |||-.+.. .++.....+.+..|.-=-|.++.
T Consensus 211 -~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~--------------eP~~~~elDtSnGvl~PFyD~dt 275 (472)
T KOG0303|consen 211 -GVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLE--------------EPIALQELDTSNGVLLPFYDPDT 275 (472)
T ss_pred -cccccCCCcceeEEeccCceeeeccccccccceeccCccccc--------------CcceeEEeccCCceEEeeecCCC
Confidence 3456553 2367788888888776443 2 79877531 12222233333345555567766
Q ss_pred CcEEEEEECCCeEEEEecCCCCCC
Q 000685 382 PHLVATGTNVGVIISEFDPRSLPA 405 (1352)
Q Consensus 382 ~~lLatGs~DG~IlriWd~~~~p~ 405 (1352)
+.+..+|-.||.| |-|.+...++
T Consensus 276 ~ivYl~GKGD~~I-RYyEit~d~P 298 (472)
T KOG0303|consen 276 SIVYLCGKGDSSI-RYFEITNEPP 298 (472)
T ss_pred CEEEEEecCCcce-EEEEecCCCc
Confidence 6677889999997 8888775544
No 171
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.59 E-value=1.5e-14 Score=155.09 Aligned_cols=287 Identities=16% Similarity=0.203 Sum_probs=188.5
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec--cccceeEecccccCCCccccc
Q 000685 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAM 82 (1352)
Q Consensus 5 ~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~~l 82 (1352)
..|++|.+.|+++.|..+++ |.+|+..|.|++|++.+...+..+..++...+..+. +.+ .|.+-
T Consensus 8 fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d-~l~tq------------ 73 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND-SLDTQ------------ 73 (323)
T ss_pred eEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCc-chhhc------------
Confidence 46779999999999998765 899999999999999998888777755544444433 222 22221
Q ss_pred cCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecC-----CCC---eEEEEEecCcEE--EEEeeCC
Q 000685 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPST-----KGR---HFLVICCVNKAI--FLDLVTM 152 (1352)
Q Consensus 83 ~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafsp-----dg~---~lLasgs~D~~I--~wDl~t~ 152 (1352)
| .|..+.+|++..+..+. .+.-.++++.|++ +++ .+++.-+...-. +-|.-..
T Consensus 74 --g-------Rd~~L~lw~ia~s~~i~--------i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~ 136 (323)
T KOG0322|consen 74 --G-------RDPLLILWTIAYSAFIS--------IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDT 136 (323)
T ss_pred --C-------CCceEEEEEccCcceEE--------EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCcc
Confidence 1 48899999988754432 1122333444433 211 122221111111 1122111
Q ss_pred ccccc--cccccCCCCeEEEEEeeccccCCC--CEEEEEECCCcEEEEECCCCeEEEEE---------ecCCCCCeeEEE
Q 000685 153 RGRDI--PKQELDNKSLVCMEFLSRSAVGDV--PLVAFGSSDGVIRVLSMISWKLVRRY---------TGGHKGSISCLM 219 (1352)
Q Consensus 153 ~~~~i--~~~~~h~~~V~~vaf~P~s~Spdg--~~LasGs~DGtIrIWDl~t~~~i~~l---------~~gH~~~V~sla 219 (1352)
...++ .......+.++|..+- ..++ -+++.|..+|.+.+||+.++..+..+ ...|..+|+++.
T Consensus 137 tqv~i~dd~~~~Klgsvmc~~~~----~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsld 212 (323)
T KOG0322|consen 137 TQVQIADDSERSKLGSVMCQDKD----HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLD 212 (323)
T ss_pred ceeEccCchhccccCceeeeecc----ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeee
Confidence 10011 0112335678888762 2233 35678889999999999987333222 126999999997
Q ss_pred EeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCe
Q 000685 220 TFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK 299 (1352)
Q Consensus 220 wf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~ 299 (1352)
+.+.-+.=++|+.+..+..|++......-. ....+.-..-+|..+...| |+++++|+|.|++||||+.++.+
T Consensus 213 ---yas~~~rGisgga~dkl~~~Sl~~s~gslq--~~~e~~lknpGv~gvrIRp---D~KIlATAGWD~RiRVyswrtl~ 284 (323)
T KOG0322|consen 213 ---YASSCDRGISGGADDKLVMYSLNHSTGSLQ--IRKEITLKNPGVSGVRIRP---DGKILATAGWDHRIRVYSWRTLN 284 (323)
T ss_pred ---echhhcCCcCCCccccceeeeeccccCccc--ccceEEecCCCccceEEcc---CCcEEeecccCCcEEEEEeccCC
Confidence 455445557788888999999875421111 1112233345688999999 89999999999999999999988
Q ss_pred EEEEecCCCcccccCCceeEEEeCCCCCEE-EEecCCe--EEec
Q 000685 300 ELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAI 340 (1352)
Q Consensus 300 ~l~~~~~~~~l~~hs~~V~svafspdg~lL-S~s~Dg~--IWDi 340 (1352)
.+.. +..|+..|.+++|+|+..++ ++|.|++ +|++
T Consensus 285 pLAV------LkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 285 PLAV------LKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred chhh------hhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 8777 68899999999999996655 7899997 7985
No 172
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.57 E-value=3.4e-13 Score=146.34 Aligned_cols=256 Identities=16% Similarity=0.144 Sum_probs=176.8
Q ss_pred CCeeeeeec--CCCCeEEEEEec-----CcEEE--EEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCC
Q 000685 121 SGFASPPPS--TKGRHFLVICCV-----NKAIF--LDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDG 191 (1352)
Q Consensus 121 ~~V~slafs--pdg~~lLasgs~-----D~~I~--wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DG 191 (1352)
..+.++.|+ ++.+..|+.|+. +++-+ +|..+++...... ..|.-+++.+.|.|.+......+|++++ .
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~-fd~~YP~tK~~wiPd~~g~~pdlLATs~--D 121 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN-FDHPYPVTKLMWIPDSKGVYPDLLATSS--D 121 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC-CCCCCCccceEecCCccccCcchhhccc--C
Confidence 346677777 455567888863 22223 3555555433333 4678899999998743212224566553 4
Q ss_pred cEEEEECCC--CeE--EEEE----ecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccc
Q 000685 192 VIRVLSMIS--WKL--VRRY----TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHD 263 (1352)
Q Consensus 192 tIrIWDl~t--~~~--i~~l----~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~ 263 (1352)
.+|+|.+.. .+. ...+ ...+..++++..| .--+.++|.++|-|-+..|||+.++..- ..+..|.+|+
T Consensus 122 ~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDW--ne~dp~~igtSSiDTTCTiWdie~~~~~---~vkTQLIAHD 196 (364)
T KOG0290|consen 122 FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDW--NEVDPNLIGTSSIDTTCTIWDIETGVSG---TVKTQLIAHD 196 (364)
T ss_pred eEEEEeccCcCCceehhhhhccCcccccCCccccccc--ccCCcceeEeecccCeEEEEEEeecccc---ceeeEEEecC
Confidence 699999873 211 1111 1246778999998 4567789999999999999999987321 1233588999
Q ss_pred cceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCC-EE-EEecCC---eEE
Q 000685 264 GGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-IL-TCVKDS---HIW 338 (1352)
Q Consensus 264 ~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~-lL-S~s~Dg---~IW 338 (1352)
..|..++|.. +..+.+++.|.||.||+||++..+-...+-. -.........++|+++.. ++ +-..|+ .|-
T Consensus 197 KEV~DIaf~~--~s~~~FASvgaDGSvRmFDLR~leHSTIIYE---~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iL 271 (364)
T KOG0290|consen 197 KEVYDIAFLK--GSRDVFASVGADGSVRMFDLRSLEHSTIIYE---DPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVIL 271 (364)
T ss_pred cceeEEEecc--CccceEEEecCCCcEEEEEecccccceEEec---CCCCCCcceeeccCcCCchHHhhhhcCCceEEEE
Confidence 9999999998 4668999999999999999997654333211 111134566788887654 33 445555 378
Q ss_pred eccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCCCCC
Q 000685 339 AIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPA 405 (1352)
Q Consensus 339 Di~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~ 405 (1352)
|++.. ..++..+.+|.. .|++++|.|..+..|+++++|..++ +||+...+.
T Consensus 272 DiR~P--------------~tpva~L~~H~a-~VNgIaWaPhS~~hictaGDD~qal-iWDl~q~~~ 322 (364)
T KOG0290|consen 272 DIRVP--------------CTPVARLRNHQA-SVNGIAWAPHSSSHICTAGDDCQAL-IWDLQQMPR 322 (364)
T ss_pred EecCC--------------CcceehhhcCcc-cccceEecCCCCceeeecCCcceEE-EEecccccc
Confidence 88754 245677888988 9999999999999999999999984 999886544
No 173
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.57 E-value=2.8e-14 Score=157.04 Aligned_cols=226 Identities=10% Similarity=0.136 Sum_probs=159.5
Q ss_pred CCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccc-cccCCCCeEEEE
Q 000685 94 DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPK-QELDNKSLVCME 171 (1352)
Q Consensus 94 Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~-~~~h~~~V~~va 171 (1352)
-|.||+.|+.++++. ....+| ...|+.+.|+|+..+++++++.|..+ .||+++..+..+.- ..+|.+.|.++.
T Consensus 114 ~GvIrVid~~~~~~~----~~~~gh-G~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD 188 (385)
T KOG1034|consen 114 LGVIRVIDVVSGQCS----KNYRGH-GGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVD 188 (385)
T ss_pred eeEEEEEecchhhhc----cceecc-CccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEE
Confidence 455556655555543 334444 77788999999998899999999999 55999987654422 378999999999
Q ss_pred EeeccccCCCCEEEEEECCCcEEEEECCCCe------E-------------------EEE--EecCCCCCeeEEEEeeeC
Q 000685 172 FLSRSAVGDVPLVAFGSSDGVIRVLSMISWK------L-------------------VRR--YTGGHKGSISCLMTFMAS 224 (1352)
Q Consensus 172 f~P~s~Spdg~~LasGs~DGtIrIWDl~t~~------~-------------------i~~--l~~gH~~~V~slawf~~s 224 (1352)
| +.+|.+|++|+.|.+|++|++...+ + +.. ...-|..+|-|+.||
T Consensus 189 ~-----~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--- 260 (385)
T KOG1034|consen 189 F-----SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--- 260 (385)
T ss_pred E-----cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH---
Confidence 9 7899999999999999999997321 0 011 123589999999987
Q ss_pred CCCCEEEEEeCCCcEEEEeCC-CCCccceecc-------cccccccccceEEEEe--eccCCCCCEEEEEECCCcEEEEE
Q 000685 225 SGEALLVSGGSDGLLILWSAD-HGQDSRELVP-------KLSLKAHDGGVVAVEL--SRVMGGSPQLITIGADKTLAIWD 294 (1352)
Q Consensus 225 ~dg~~LaSgS~DGtVrVWDl~-tg~~~~~~~~-------~~~l~gH~~~V~slaf--sp~~~dg~~LaSgs~DgtV~IWD 294 (1352)
|++++|=|-++.|..|... -++......+ ...+.-....++-+.| .| -+++|+.|...|.|.+||
T Consensus 261 --gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~---~~~~la~gnq~g~v~vwd 335 (385)
T KOG1034|consen 261 --GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP---WQKMLALGNQSGKVYVWD 335 (385)
T ss_pred --hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH---HHHHHhhccCCCcEEEEE
Confidence 6899999999999999873 1221111100 0112222344555554 44 578999999999999999
Q ss_pred CCCCeEEEEecCCCcc--cccCCceeEEEeCCCCCEE-EEecCCeEEecc
Q 000685 295 TVSFKELRRIKPVPKL--ACHSVASWCHPRAPNLDIL-TCVKDSHIWAIE 341 (1352)
Q Consensus 295 l~tg~~l~~~~~~~~l--~~hs~~V~svafspdg~lL-S~s~Dg~IWDi~ 341 (1352)
++....... .++ .-....|...+|+.|+.+| ....|+.||.++
T Consensus 336 L~~~ep~~~----ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 336 LDNNEPPKC----TTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred CCCCCCccC----ceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 997665311 111 1223467899999999966 678899988765
No 174
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=8.2e-14 Score=155.07 Aligned_cols=326 Identities=13% Similarity=0.088 Sum_probs=215.1
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccC
Q 000685 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1352)
Q Consensus 5 ~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~ 84 (1352)
+.+.+|.+.|+++.||.+++||++|+.|..++||+++.--.-++.+
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~K---------------------------------- 95 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPK---------------------------------- 95 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCC----------------------------------
Confidence 4578999999999999999999999999999999986311100000
Q ss_pred CceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEE-EeeCCccccccccccC
Q 000685 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELD 163 (1352)
Q Consensus 85 g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~w-Dl~t~~~~~i~~~~~h 163 (1352)
. +.....||.+.|.|++|...++ ++.+|..++.++. |+.+.+...+......
T Consensus 96 ----------------------P----I~~~~~~H~SNIF~L~F~~~N~-~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~ 148 (609)
T KOG4227|consen 96 ----------------------P----IGVMEHPHRSNIFSLEFDLENR-FLYSGERWGTVIKHDIETKQSIYVANENNN 148 (609)
T ss_pred ----------------------C----ceeccCccccceEEEEEccCCe-eEecCCCcceeEeeecccceeeeeecccCc
Confidence 0 1233445578899999998775 9999999998877 9988776555444444
Q ss_pred CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCe-EEEEE-ecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEE
Q 000685 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK-LVRRY-TGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1352)
Q Consensus 164 ~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~-~i~~l-~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrV 241 (1352)
.+.|+.+.. +|..+.+++.+.++.|.+||.+... .+..+ ..........+. +.+....+|++.+..+-+.+
T Consensus 149 ~~~VY~m~~-----~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~--F~P~~P~Li~~~~~~~G~~~ 221 (609)
T KOG4227|consen 149 RGDVYHMDQ-----HPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAE--FHPETPALILVNSETGGPNV 221 (609)
T ss_pred ccceeeccc-----CCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeee--ecCCCceeEEeccccCCCCc
Confidence 568999999 5578899999999999999998643 22211 112233444453 24455678999999999999
Q ss_pred EeCCCCCc-cceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeE-EEEecCCCcccccCCceeE
Q 000685 242 WSADHGQD-SRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKE-LRRIKPVPKLACHSVASWC 319 (1352)
Q Consensus 242 WDl~tg~~-~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~-l~~~~~~~~l~~hs~~V~s 319 (1352)
||++.... +....-...|......-.++.|+| +|..|++--....-.+||+-+.+| +..+.....-......+.+
T Consensus 222 ~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~---~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS 298 (609)
T KOG4227|consen 222 FDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP---SGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKS 298 (609)
T ss_pred eeeccccchHHhhhccccCcccchhhhheeeCC---CCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeee
Confidence 99986431 111001111222222235678999 788888887777778899887554 2222111111222335668
Q ss_pred EEeCCCCCEEEEecCC--eEEeccCCcc-cccccCcc-------ccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEE
Q 000685 320 HPRAPNLDILTCVKDS--HIWAIEHPTY-SALTRPLC-------ELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGT 389 (1352)
Q Consensus 320 vafspdg~lLS~s~Dg--~IWDi~t~~~-~~~~~~l~-------~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs 389 (1352)
++|..|..+++|+.+- .+|.+....- ...+.... .+--.....++.+|.. .+.-+.|+| -.++|++.+
T Consensus 299 ~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRS-v~NQVRF~~-H~~~l~SSG 376 (609)
T KOG4227|consen 299 MTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRS-VPNQVRFSQ-HNNLLVSSG 376 (609)
T ss_pred eeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccc-cccceeecC-CcceEeccc
Confidence 8888887777777664 4898753211 11110001 0011223457888988 899999999 477788888
Q ss_pred CCCeEEEEecCCCCC
Q 000685 390 NVGVIISEFDPRSLP 404 (1352)
Q Consensus 390 ~DG~IlriWd~~~~p 404 (1352)
-.+.+ ++|.....|
T Consensus 377 VE~~~-KlWS~~r~P 390 (609)
T KOG4227|consen 377 VENSF-KLWSDHRLP 390 (609)
T ss_pred hhhhe-eccccccCC
Confidence 88886 899876554
No 175
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=8.3e-11 Score=139.30 Aligned_cols=281 Identities=12% Similarity=0.093 Sum_probs=177.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccc--cCCce
Q 000685 10 TNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAM--RGGSV 87 (1352)
Q Consensus 10 Hs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l--~~g~V 87 (1352)
.+....|++|+....+++.|+.||.++|-.+.+...-..... |+..+.-. ..+++ |.++|
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g---------------laa~snLs---mNQtLeGH~~sV 74 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG---------------LAAASNLS---MNQTLEGHNASV 74 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc---------------cccccccc---hhhhhccCcceE
Confidence 446789999999999999999999999998876432111110 11000000 00111 12455
Q ss_pred EEEEE-----------cCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEEEeeCCcccc
Q 000685 88 KQVNF-----------YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRD 156 (1352)
Q Consensus 88 ~sVaF-----------~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl~t~~~~~ 156 (1352)
.-+.| .+|.|.+|-+..+.... ........+.|.+++|+.+|. .++....||.+++....|..
T Consensus 75 ~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~E---EMiNnRnKSvV~SmsWn~dG~-kIcIvYeDGavIVGsvdGNR-- 148 (1189)
T KOG2041|consen 75 MVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCE---EMINNRNKSVVVSMSWNLDGT-KICIVYEDGAVIVGSVDGNR-- 148 (1189)
T ss_pred EEEEeccccccccccCCCceEEEEeeecccHHH---HHhhCcCccEEEEEEEcCCCc-EEEEEEccCCEEEEeeccce--
Confidence 55555 57899999998887652 223333467799999999998 88888888888773333322
Q ss_pred ccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCC-------eEEEEEe---cCCCCCeeEEEEe-----
Q 000685 157 IPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-------KLVRRYT---GGHKGSISCLMTF----- 221 (1352)
Q Consensus 157 i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~-------~~i~~l~---~gH~~~V~slawf----- 221 (1352)
+-...........+.| ++|...++.+-.+|.+.+||.+.. .+..... ......|-.+.|+
T Consensus 149 IwgKeLkg~~l~hv~w-----s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~ 223 (1189)
T KOG2041|consen 149 IWGKELKGQLLAHVLW-----SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQ 223 (1189)
T ss_pred ecchhcchheccceee-----cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccc
Confidence 2112223334456888 789999999999999999997642 2211111 1233457778886
Q ss_pred eeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCC---------cEEE
Q 000685 222 MASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADK---------TLAI 292 (1352)
Q Consensus 222 ~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~Dg---------tV~I 292 (1352)
...|+...|+.|-..|.+.+-.-.+... |. +....-.+..+.|++ +|..|+.+|.|. .|++
T Consensus 224 ~v~pdrP~lavcy~nGr~QiMR~eND~~-----Pv--v~dtgm~~vgakWnh---~G~vLAvcG~~~da~~~~d~n~v~F 293 (1189)
T KOG2041|consen 224 PVPPDRPRLAVCYANGRMQIMRSENDPE-----PV--VVDTGMKIVGAKWNH---NGAVLAVCGNDSDADEPTDSNKVHF 293 (1189)
T ss_pred cCCCCCCEEEEEEcCceehhhhhcCCCC-----Ce--EEecccEeecceecC---CCcEEEEccCcccccCccccceEEE
Confidence 2456888999999999988765444321 11 122234578899999 799999888652 5566
Q ss_pred EECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEEEEecCCe
Q 000685 293 WDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSH 336 (1352)
Q Consensus 293 WDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lLS~s~Dg~ 336 (1352)
|.. -|+.+.++ ......|++++|-..|--++-.-|+.
T Consensus 294 ysp-~G~i~gtl------kvpg~~It~lsWEg~gLriA~Avdsf 330 (1189)
T KOG2041|consen 294 YSP-YGHIVGTL------KVPGSCITGLSWEGTGLRIAIAVDSF 330 (1189)
T ss_pred ecc-chhheEEE------ecCCceeeeeEEcCCceEEEEEecce
Confidence 553 35555553 44455677888877666555555553
No 176
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.56 E-value=4.6e-13 Score=166.93 Aligned_cols=358 Identities=14% Similarity=0.155 Sum_probs=205.8
Q ss_pred eeEEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCC-------cEEEEEeccCccceEEe--ccccceeEeccc
Q 000685 3 RLKAFRPTNDKIVKIQLHPTH-PWLVTADASDHVSVWNWEHR-------QVIYELKAGGVDQRRLV--GAKLEKLAEGEL 72 (1352)
Q Consensus 3 ~l~~L~gHs~~V~~lafSPdg-~~LaTgs~DG~VrVWDl~tg-------~~i~t~~~~~~~~i~~v--s~dg~~Lasgs~ 72 (1352)
.+.+|..|+..|..++.++.. .+++|||.||+|++||...- +...++.. ....+..+ +..+..+|.+.
T Consensus 1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~-~~sr~~~vt~~~~~~~~Av~t- 1117 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP-EGSRVEKVTMCGNGDQFAVST- 1117 (1431)
T ss_pred EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec-cCCceEEEEeccCCCeEEEEc-
Confidence 367889999999999998766 89999999999999997531 11122221 11122222 24555555543
Q ss_pred ccCCCccccccCCceEEEEEcCCeEEEEEcCCc--cccc-cccccccccCCC-CeeeeeecCCCCe-EEEEEe-cCcEEE
Q 000685 73 EHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRN--RAAA-AEAPTAVSNVTS-GFASPPPSTKGRH-FLVICC-VNKAIF 146 (1352)
Q Consensus 73 d~~g~~l~~l~~g~V~sVaF~Dg~IrlWDl~t~--~~i~-~~~~~~~~~~~~-~V~slafspdg~~-lLasgs-~D~~I~ 146 (1352)
.||.|++.++... +... ........+..+ .|..-+|....+. .++.+. ..+++.
T Consensus 1118 --------------------~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~ 1177 (1431)
T KOG1240|consen 1118 --------------------KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVS 1177 (1431)
T ss_pred --------------------CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEE
Confidence 6888888887662 1111 001111111122 3444445443322 455554 455558
Q ss_pred EEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCC
Q 000685 147 LDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSG 226 (1352)
Q Consensus 147 wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~d 226 (1352)
||..+.............+.|++++. +|.++++++|+..|.+.+||++-+..+.....++..+++.+..+.+.+.
T Consensus 1178 ~D~r~~~~~w~lk~~~~hG~vTSi~i-----dp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~ 1252 (1431)
T KOG1240|consen 1178 WDTRMRHDAWRLKNQLRHGLVTSIVI-----DPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQ 1252 (1431)
T ss_pred ecchhhhhHHhhhcCccccceeEEEe-----cCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCC
Confidence 88877654333334555789999999 7789999999999999999999988888887677788988843334443
Q ss_pred CCEEEEEe--CCCcEEEEeCCCCCccceeccc-----cc--cc------ccccceEEEEeeccCCCCCEEEEEECCCcEE
Q 000685 227 EALLVSGG--SDGLLILWSADHGQDSRELVPK-----LS--LK------AHDGGVVAVELSRVMGGSPQLITIGADKTLA 291 (1352)
Q Consensus 227 g~~LaSgS--~DGtVrVWDl~tg~~~~~~~~~-----~~--l~------gH~~~V~slafsp~~~dg~~LaSgs~DgtV~ 291 (1352)
....++++ ..+.|.+|++.+|.+...+... .. +. .+.-......+.- .+..+.+|+.|..|+
T Consensus 1253 ~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~---~~~~~ltggsd~kIR 1329 (1431)
T KOG1240|consen 1253 ESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCE---KNGFLLTGGSDMKIR 1329 (1431)
T ss_pred CceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeeccc---CCceeeecCCcccee
Confidence 44555444 5788999999998654432111 00 00 1111122223332 467899999999999
Q ss_pred EEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEEEEec--CCe-EEeccCCcccccccCccccCCCCCCeEEecCC
Q 000685 292 IWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVK--DSH-IWAIEHPTYSALTRPLCELSSLVPPQVLAHHK 368 (1352)
Q Consensus 292 IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lLS~s~--Dg~-IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~ 368 (1352)
.||...-.... . ...+.+........+.+-.++.++. |.. +.....+... ..+........ +...-..|.
T Consensus 1330 ~wD~~~p~~ss-~----~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~-~~~~~~~~~~~-~~~ps~~H~ 1402 (1431)
T KOG1240|consen 1330 KWDPTRPEISS-Y----AVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTE-ALRENQKLRPG-PSDPSTYHH 1402 (1431)
T ss_pred eccCCCccccc-c----cccCccccccccchhccccccCCCccchhhhhhhhhcCchh-hcccccccccC-CCCCccccc
Confidence 99987544221 1 1122222222333333333333321 111 1111111000 00000001111 111123455
Q ss_pred cccEEEEEEecCCCcEEEEEECCCeEEEEec
Q 000685 369 KLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1352)
Q Consensus 369 ~~~V~~la~sp~~~~lLatGs~DG~IlriWd 399 (1352)
+ .|.+|++......+|++++.||.| ++|.
T Consensus 1403 d-~Itdma~~~~~q~llvs~s~dG~I-kiWk 1431 (1431)
T KOG1240|consen 1403 D-PITDMATLKSEQPLLVSSSRDGVI-KIWK 1431 (1431)
T ss_pred c-hhhhhhhhccCccEEEEecCCCee-eecC
Confidence 5 899999988777789999999997 8993
No 177
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.53 E-value=1.5e-13 Score=156.87 Aligned_cols=257 Identities=16% Similarity=0.136 Sum_probs=177.1
Q ss_pred CCCCeeeeeecCCCC-eEEEEEecCcEE-EEEeeCC--ccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEE
Q 000685 119 VTSGFASPPPSTKGR-HFLVICCVNKAI-FLDLVTM--RGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIR 194 (1352)
Q Consensus 119 ~~~~V~slafspdg~-~lLasgs~D~~I-~wDl~t~--~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIr 194 (1352)
+...|++++|+|... .++++|...|.| +||+.+. ....+..+..|..+|.++.|.|. +...|++.|.||+|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~----n~s~i~ssSyDGtiR 260 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPA----NTSQIYSSSYDGTIR 260 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCC----ChhheeeeccCceee
Confidence 467899999999765 688999998988 8888522 22345556788999999999663 456799999999999
Q ss_pred EEECCCCeEEEEEec-CCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeec
Q 000685 195 VLSMISWKLVRRYTG-GHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSR 273 (1352)
Q Consensus 195 IWDl~t~~~i~~l~~-gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp 273 (1352)
+-|+++...-..+.. .....+.++. ++.+...++.+..=|...+||++++.... ..+.-|+..|++|+++|
T Consensus 261 ~~D~~~~i~e~v~s~~~d~~~fs~~d---~~~e~~~vl~~~~~G~f~~iD~R~~~s~~-----~~~~lh~kKI~sv~~NP 332 (498)
T KOG4328|consen 261 LQDFEGNISEEVLSLDTDNIWFSSLD---FSAESRSVLFGDNVGNFNVIDLRTDGSEY-----ENLRLHKKKITSVALNP 332 (498)
T ss_pred eeeecchhhHHHhhcCccceeeeecc---ccCCCccEEEeecccceEEEEeecCCccc-----hhhhhhhcccceeecCC
Confidence 999987533222210 1222333333 67777777777777799999999876422 22567888999999999
Q ss_pred cCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCC-CEEEEecCCe--EEeccCCccccccc
Q 000685 274 VMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNL-DILTCVKDSH--IWAIEHPTYSALTR 350 (1352)
Q Consensus 274 ~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg-~lLS~s~Dg~--IWDi~t~~~~~~~~ 350 (1352)
. ...+|+|+|.|++.+|||++.-..-.. +.-....|...|.+..|||.+ .+++.+.|.+ |||...- ....
T Consensus 333 ~--~p~~laT~s~D~T~kIWD~R~l~~K~s--p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~--sa~~- 405 (498)
T KOG4328|consen 333 V--CPWFLATASLDQTAKIWDLRQLRGKAS--PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCI--SAKD- 405 (498)
T ss_pred C--CchheeecccCcceeeeehhhhcCCCC--cceecccccceeeeeEEcCCCCceEeeccCCceEEeecccc--cccC-
Confidence 5 677999999999999999986432111 112235799999999999984 5778888885 8998511 0000
Q ss_pred CccccCCCCCCeEEecCCc----ccEEEEEEecCCCcEEEEEECCCeEEEEecCCCCC
Q 000685 351 PLCELSSLVPPQVLAHHKK----LRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLP 404 (1352)
Q Consensus 351 ~l~~~~~~~~~~~l~~h~~----~~V~~la~sp~~~~lLatGs~DG~IlriWd~~~~p 404 (1352)
.+..++..... ....-..|+| +.++|++|-.-.-| -++|.....
T Consensus 406 --------~p~~~I~Hn~~t~RwlT~fKA~W~P-~~~li~vg~~~r~I-Dv~~~~~~q 453 (498)
T KOG4328|consen 406 --------EPLGTIPHNNRTGRWLTPFKAAWDP-DYNLIVVGRYPRPI-DVFDGNGGQ 453 (498)
T ss_pred --------CccceeeccCcccccccchhheeCC-CccEEEEeccCcce-eEEcCCCCE
Confidence 11111111110 1233467999 67888988887776 577655443
No 178
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=2.3e-13 Score=150.91 Aligned_cols=287 Identities=15% Similarity=0.221 Sum_probs=185.6
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCCceEEEEEcCCeEEEEEcC
Q 000685 24 PWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLW 103 (1352)
Q Consensus 24 ~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~sVaF~Dg~IrlWDl~ 103 (1352)
..+|++..+|.|++||..+|+.+..|+.+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~-------------------------------------------------- 70 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPP-------------------------------------------------- 70 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCC--------------------------------------------------
Confidence 468888889999999998888888887432
Q ss_pred CccccccccccccccCCCCeeeeeecC-CCCeEEEEEecCcEE-EEEeeCCccccccccccCC-CCeEEEEEeeccccCC
Q 000685 104 RNRAAAAEAPTAVSNVTSGFASPPPST-KGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDN-KSLVCMEFLSRSAVGD 180 (1352)
Q Consensus 104 t~~~i~~~~~~~~~~~~~~V~slafsp-dg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~h~-~~V~~vaf~P~s~Spd 180 (1352)
..++.+.|.. ++.+.+.+|+.||.| .||+++...........+. .+-.|++- ..+
T Consensus 71 -----------------~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~-----nck 128 (376)
T KOG1188|consen 71 -----------------ATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDL-----NCK 128 (376)
T ss_pred -----------------CcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeec-----cCc
Confidence 1122233322 244577778888777 5587765543333333333 45667766 446
Q ss_pred CCEEEEEE----CCCcEEEEECCCCeE-EEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecc
Q 000685 181 VPLVAFGS----SDGVIRVLSMISWKL-VRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVP 255 (1352)
Q Consensus 181 g~~LasGs----~DGtIrIWDl~t~~~-i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~ 255 (1352)
++.+++|+ .|-.|.+||++..+. ++.+...|...|++++ +.+.+.++|+|||.||-|.+||+.....-. +
T Consensus 129 ~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lr--FHP~~pnlLlSGSvDGLvnlfD~~~d~EeD---a 203 (376)
T KOG1188|consen 129 KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLR--FHPSDPNLLLSGSVDGLVNLFDTKKDNEED---A 203 (376)
T ss_pred CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEE--ecCCCCCeEEeecccceEEeeecCCCcchh---h
Confidence 77888876 467899999998766 7888789999999998 366788999999999999999998653221 2
Q ss_pred cccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCC---ce-eEEEe-CCCC-C-E
Q 000685 256 KLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSV---AS-WCHPR-APNL-D-I 328 (1352)
Q Consensus 256 ~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~---~V-~svaf-spdg-~-l 328 (1352)
......|...|.++.|+. +.-+.|.+-+...+..+|++..+.+...+........... ++ +-+.. +|.+ . .
T Consensus 204 L~~viN~~sSI~~igw~~--~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~ 281 (376)
T KOG1188|consen 204 LLHVINHGSSIHLIGWLS--KKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTC 281 (376)
T ss_pred HHHhhcccceeeeeeeec--CCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceE
Confidence 223456778899999997 2335788999999999999999886555432211100000 00 01111 1322 2 2
Q ss_pred E-EEecCC--eEEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecC
Q 000685 329 L-TCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDP 400 (1352)
Q Consensus 329 L-S~s~Dg--~IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~ 400 (1352)
+ +++.-+ +++-+.... ..........+.+++...|.++.|.- .+.++.+|+.||.+ .+|..
T Consensus 282 ~l~g~~~n~~~~~~~~~~~---------s~~~~~~~a~l~g~~~eiVR~i~~~~-~~~~l~TGGEDG~l-~~Wk~ 345 (376)
T KOG1188|consen 282 ALAGTDSNKGTIFPLVDTS---------SGSLLTEPAILQGGHEEIVRDILFDV-KNDVLYTGGEDGLL-QAWKV 345 (376)
T ss_pred EEeccccCceeEEEeeecc---------cccccCccccccCCcHHHHHHHhhhc-ccceeeccCCCceE-EEEec
Confidence 2 333222 344433110 11122334556665655788888886 67889999999997 79963
No 179
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.52 E-value=2.5e-14 Score=171.63 Aligned_cols=280 Identities=14% Similarity=0.185 Sum_probs=203.5
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec--cccceeEecccccCCCcccc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEA 81 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~~ 81 (1352)
++.|.||-+.|+|+.|...|.+++||+.|..|+||..+++.++.+.. +|...+.-+. .....+++++
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~r-Ghs~ditdlavs~~n~~iaaaS---------- 251 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCR-GHSGDITDLAVSSNNTMIAAAS---------- 251 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCC-CCccccchhccchhhhhhhhcc----------
Confidence 45688999999999999999999999999999999999999999888 5555555444 2333444443
Q ss_pred ccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccc-
Q 000685 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPK- 159 (1352)
Q Consensus 82 l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~- 159 (1352)
.|..||+|.+.++..+ ..+.+| ++.|++++|+|-. +.++|+++ +||+.-.-...++.
T Consensus 252 -----------~D~vIrvWrl~~~~pv----svLrgh-tgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp 310 (1113)
T KOG0644|consen 252 -----------NDKVIRVWRLPDGAPV----SVLRGH-TGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRP 310 (1113)
T ss_pred -----------cCceEEEEecCCCchH----HHHhcc-ccceeeeccCccc-----cCCCCCceEeccccccccccCCCC
Confidence 6889999999998765 455666 9999999999954 56788888 56776211111111
Q ss_pred -cccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCc
Q 000685 160 -QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL 238 (1352)
Q Consensus 160 -~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGt 238 (1352)
.....+-+.++.| ..++..+++|+.|+.-+.|.+.... .|...+.-+. + .+.-..+.+++-.+-.
T Consensus 311 ~~~~~~~~~~s~~~-----~~~~~~f~Tgs~d~ea~n~e~~~l~-------~~~~~lif~t-~-ssd~~~~~~~ar~~~~ 376 (1113)
T KOG0644|consen 311 LKFTEKDLVDSILF-----ENNGDRFLTGSRDGEARNHEFEQLA-------WRSNLLIFVT-R-SSDLSSIVVTARNDHR 376 (1113)
T ss_pred CCcccccceeeeec-----cccccccccccCCcccccchhhHhh-------hhccceEEEe-c-cccccccceeeeeeeE
Confidence 1122345666667 5578889999999999998765321 1211111111 0 1111245667777889
Q ss_pred EEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCcee
Q 000685 239 LILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASW 318 (1352)
Q Consensus 239 VrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~ 318 (1352)
+++|++.+|...+. +.+|...++.+.+||. +..+..+++.||...|||+-.|..++.. ..+|... .
T Consensus 377 ~~vwnl~~g~l~H~------l~ghsd~~yvLd~Hpf--n~ri~msag~dgst~iwdi~eg~pik~y-----~~gh~kl-~ 442 (1113)
T KOG0644|consen 377 LCVWNLYTGQLLHN------LMGHSDEVYVLDVHPF--NPRIAMSAGYDGSTIIWDIWEGIPIKHY-----FIGHGKL-V 442 (1113)
T ss_pred eeeeecccchhhhh------hcccccceeeeeecCC--CcHhhhhccCCCceEeeecccCCcceee-----eccccee-e
Confidence 99999999987654 6899999999999995 6778889999999999999999888774 2455444 4
Q ss_pred EEEeCCCCCEEEEecCC-eEEeccCC
Q 000685 319 CHPRAPNLDILTCVKDS-HIWAIEHP 343 (1352)
Q Consensus 319 svafspdg~lLS~s~Dg-~IWDi~t~ 343 (1352)
...||++|.-++++.|. .++-+.++
T Consensus 443 d~kFSqdgts~~lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 443 DGKFSQDGTSIALSDDHGQLYILGTG 468 (1113)
T ss_pred ccccCCCCceEecCCCCCceEEeccC
Confidence 67899999988887664 56666554
No 180
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.52 E-value=7.9e-11 Score=137.54 Aligned_cols=328 Identities=24% Similarity=0.378 Sum_probs=223.3
Q ss_pred eEEecCCCC-CEEEEEE-cCCCC-EEEEEeC-CCcEEEEECCC-CcEEEEEeccCccceEEec--cccceeEecccccCC
Q 000685 4 LKAFRPTND-KIVKIQL-HPTHP-WLVTADA-SDHVSVWNWEH-RQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKG 76 (1352)
Q Consensus 4 l~~L~gHs~-~V~~laf-SPdg~-~LaTgs~-DG~VrVWDl~t-g~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~g 76 (1352)
+..+.++.. .+..+.+ ++++. .++..+. |+.+++||... ...+..+. .|...+..+. ++++.++.+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~---- 175 (466)
T COG2319 101 IKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLE-GHSESVTSLAFSPDGKLLASGSS---- 175 (466)
T ss_pred EEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEe-cCcccEEEEEECCCCCEEEecCC----
Confidence 455666443 7888888 88888 5555444 99999999987 66666666 4445555333 77766666531
Q ss_pred CccccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccc
Q 000685 77 KPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGR 155 (1352)
Q Consensus 77 ~~l~~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~ 155 (1352)
.|+.+++|+...+..+ ....+ |...+.+++|+|+++.++++++.|+.+ .||...+..
T Consensus 176 ----------------~~~~~~~~~~~~~~~~----~~~~~-~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~- 233 (466)
T COG2319 176 ----------------LDGTIKLWDLRTGKPL----STLAG-HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKL- 233 (466)
T ss_pred ----------------CCCceEEEEcCCCceE----Eeecc-CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcE-
Confidence 2899999999985443 22223 488899999999987455554777777 566664432
Q ss_pred ccc-ccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeE-EEEEecCCCCCeeEEEEeeeCCCCCEEEEE
Q 000685 156 DIP-KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKL-VRRYTGGHKGSISCLMTFMASSGEALLVSG 233 (1352)
Q Consensus 156 ~i~-~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~-i~~l~~gH~~~V~slawf~~s~dg~~LaSg 233 (1352)
+. ....|.... ...| ++++.++++++.|+.+++||...... +..+ .+|...|.++. +.|++..++++
T Consensus 234 -~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~---~~~~~~~~~~~ 302 (466)
T COG2319 234 -LRSTLSGHSDSV-VSSF-----SPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-SGHSSSVLSVA---FSPDGKLLASG 302 (466)
T ss_pred -EeeecCCCCcce-eEeE-----CCCCCEEEEecCCCcEEEeeecCCCcEEEEE-ecCCccEEEEE---ECCCCCEEEEe
Confidence 22 355666554 3367 66788899999999999999986654 4444 48899999996 67788888889
Q ss_pred eCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEE-ECCCcEEEEECCCCeEEEEecCCCcccc
Q 000685 234 GSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITI-GADKTLAIWDTVSFKELRRIKPVPKLAC 312 (1352)
Q Consensus 234 S~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSg-s~DgtV~IWDl~tg~~l~~~~~~~~l~~ 312 (1352)
+.|+.+++||..+........ ...|...+..+.| +. ++..++.+ ..|+.+.+|++......... ..
T Consensus 303 ~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------~~ 369 (466)
T COG2319 303 SSDGTVRLWDLETGKLLSSLT----LKGHEGPVSSLSF-SP--DGSLLVSGGSDDGTIRLWDLRTGKPLKTL------EG 369 (466)
T ss_pred eCCCcEEEEEcCCCceEEEee----ecccCCceEEEEE-CC--CCCEEEEeecCCCcEEeeecCCCceeEEe------cC
Confidence 999999999988776544311 3467778999999 51 33455555 68899999999887632221 11
Q ss_pred cCCceeEEEeCCCCCEE-E-EecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEE
Q 000685 313 HSVASWCHPRAPNLDIL-T-CVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATG 388 (1352)
Q Consensus 313 hs~~V~svafspdg~lL-S-~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatG 388 (1352)
+. .+..+.+++ ...+ . ++.++. +|+...... ......+. ..+....+.+ ++..++.+
T Consensus 370 ~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~-~~~~~~~~~~-~~~~~~~~ 430 (466)
T COG2319 370 HS-NVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSL---------------LRNLDGHT-SRVTSLDFSP-DGKSLASG 430 (466)
T ss_pred Cc-eEEEEEECC-CCCEEEEecCCCceEEEecccCee---------------eeeccCCC-CcEEEEEECC-CCcEEEEe
Confidence 11 267888888 4433 3 456664 899885421 01111111 3788888888 57778888
Q ss_pred ECCCeEEEEecCCC
Q 000685 389 TNVGVIISEFDPRS 402 (1352)
Q Consensus 389 s~DG~IlriWd~~~ 402 (1352)
+.++.+ ++|+...
T Consensus 431 ~~~~~~-~~~~~~~ 443 (466)
T COG2319 431 SSDNTI-RLWDLKT 443 (466)
T ss_pred cCCCcE-EEEeccC
Confidence 888886 7998764
No 181
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=1.6e-13 Score=160.34 Aligned_cols=258 Identities=15% Similarity=0.191 Sum_probs=184.1
Q ss_pred EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--------CcEEEEEeccCccceEEec--cccceeEecccccC
Q 000685 6 AFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEH--------RQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHK 75 (1352)
Q Consensus 6 ~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~t--------g~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~ 75 (1352)
++..|.+.|+.++|+|..+.|++++.||++++|+++. -+.+.+|. .|...|.++. ..++.+.+|+
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfr-aH~gPVl~v~v~~n~~~~ysgg---- 363 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFR-AHEGPVLCVVVPSNGEHCYSGG---- 363 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEe-cccCceEEEEecCCceEEEeec----
Confidence 7889999999999999999999999999999999931 24577777 5567777665 7788888876
Q ss_pred CCccccccCCceEEEEEcCCeEEEEEcCCccccc------cccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEE-E
Q 000685 76 GKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAA------AEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-D 148 (1352)
Q Consensus 76 g~~l~~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~------~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~w-D 148 (1352)
.||+||.|++..+.--. .......|| ...|+.+++|.... .|++|+.|++++. +
T Consensus 364 -----------------~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Gh-tdavw~l~~s~~~~-~Llscs~DgTvr~w~ 424 (577)
T KOG0642|consen 364 -----------------IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGH-TDAVWLLALSSTKD-RLLSCSSDGTVRLWE 424 (577)
T ss_pred -----------------cCceeeeeccCCCCCcccccCcchhccceecc-ccceeeeeeccccc-ceeeecCCceEEeec
Confidence 79999999765322111 123445565 88999999999876 7999999999955 4
Q ss_pred eeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCC------CCCeeEEEEee
Q 000685 149 LVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGH------KGSISCLMTFM 222 (1352)
Q Consensus 149 l~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH------~~~V~slawf~ 222 (1352)
...... +........+....+.|- +.+-...++...-+.-.++++.....+..+...- ...+.-+.
T Consensus 425 ~~~~~~-~~f~~~~e~g~Plsvd~~----ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vV--- 496 (577)
T KOG0642|consen 425 PTEESP-CTFGEPKEHGYPLSVDRT----SSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVV--- 496 (577)
T ss_pred cCCcCc-cccCCccccCCcceEeec----cchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEE---
Confidence 443322 222223335566777772 1121223333333444445555544444442111 12344443
Q ss_pred eCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEE
Q 000685 223 ASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELR 302 (1352)
Q Consensus 223 ~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~ 302 (1352)
.+++..+.+++..|+.|+++|..+++.+.. ...|...|+++++.| ++.+|++++.||.+++|.+....|+.
T Consensus 497 s~~~~~~~~~~hed~~Ir~~dn~~~~~l~s------~~a~~~svtslai~~---ng~~l~s~s~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 497 SHPTADITFTAHEDRSIRFFDNKTGKILHS------MVAHKDSVTSLAIDP---NGPYLMSGSHDGSVRLWKLDVKTCVL 567 (577)
T ss_pred ecCCCCeeEecccCCceecccccccccchh------eeeccceecceeecC---CCceEEeecCCceeehhhccchheee
Confidence 577889999999999999999999986654 688999999999999 89999999999999999998877776
Q ss_pred Ee
Q 000685 303 RI 304 (1352)
Q Consensus 303 ~~ 304 (1352)
.+
T Consensus 568 es 569 (577)
T KOG0642|consen 568 ES 569 (577)
T ss_pred cc
Confidence 53
No 182
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.48 E-value=5.6e-12 Score=137.09 Aligned_cols=229 Identities=14% Similarity=0.136 Sum_probs=159.8
Q ss_pred cCCeEEEEEcCCc--cccc--cccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCcccc-ccccccCCCC
Q 000685 93 YDDDVRFWQLWRN--RAAA--AEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRD-IPKQELDNKS 166 (1352)
Q Consensus 93 ~Dg~IrlWDl~t~--~~i~--~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~-i~~~~~h~~~ 166 (1352)
.+..+|+|.+... +... ........++..++++..|+.-...++.+++-|.+. +||++++..-. ...+..|...
T Consensus 119 s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKE 198 (364)
T KOG0290|consen 119 SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKE 198 (364)
T ss_pred ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcc
Confidence 3678999998742 1110 111222334467899999998777799999999988 78999873211 2235789999
Q ss_pred eEEEEEeeccccCC-CCEEEEEECCCcEEEEECCCCeEEEEEe-cCC-CCCeeEEEEeeeCCCCCEEEEEeCC-CcEEEE
Q 000685 167 LVCMEFLSRSAVGD-VPLVAFGSSDGVIRVLSMISWKLVRRYT-GGH-KGSISCLMTFMASSGEALLVSGGSD-GLLILW 242 (1352)
Q Consensus 167 V~~vaf~P~s~Spd-g~~LasGs~DGtIrIWDl~t~~~i~~l~-~gH-~~~V~slawf~~s~dg~~LaSgS~D-GtVrVW 242 (1352)
|..|+|. .. -+.+++.+.||+||+||++..+....+. ... ..+...++| ...+.+++++-..| ..|.+.
T Consensus 199 V~DIaf~-----~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw--nkqDpnymATf~~dS~~V~iL 271 (364)
T KOG0290|consen 199 VYDIAFL-----KGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW--NKQDPNYMATFAMDSNKVVIL 271 (364)
T ss_pred eeEEEec-----cCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc--CcCCchHHhhhhcCCceEEEE
Confidence 9999994 33 3689999999999999999765433332 222 457777876 46677788876554 568999
Q ss_pred eCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEe
Q 000685 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPR 322 (1352)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svaf 322 (1352)
|++... .+...|++|.+.|+.++|.|. ....|+|+|+|..+.+||+...-.-....+.-.. .-...|..+.|
T Consensus 272 DiR~P~-----tpva~L~~H~a~VNgIaWaPh--S~~hictaGDD~qaliWDl~q~~~~~~~dPilay-~a~~EVNqi~W 343 (364)
T KOG0290|consen 272 DIRVPC-----TPVARLRNHQASVNGIAWAPH--SSSHICTAGDDCQALIWDLQQMPRENGEDPILAY-TAGGEVNQIQW 343 (364)
T ss_pred EecCCC-----cceehhhcCcccccceEecCC--CCceeeecCCcceEEEEecccccccCCCCchhhh-hccceeeeeee
Confidence 998753 345668999999999999994 7889999999999999999753210111111111 23456788999
Q ss_pred CCC-CCEEEEecCCe
Q 000685 323 APN-LDILTCVKDSH 336 (1352)
Q Consensus 323 spd-g~lLS~s~Dg~ 336 (1352)
++. .+.++...+.+
T Consensus 344 s~~~~Dwiai~~~kk 358 (364)
T KOG0290|consen 344 SSSQPDWIAICFGKK 358 (364)
T ss_pred cccCCCEEEEEecCe
Confidence 864 55776554443
No 183
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=3.7e-13 Score=154.57 Aligned_cols=300 Identities=17% Similarity=0.215 Sum_probs=209.8
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec----cccceeEecccccCCCcc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG----AKLEKLAEGELEHKGKPT 79 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs----~dg~~Lasgs~d~~g~~l 79 (1352)
...|.+|.+.|..|.|+..|.+|++|+.|..|.+|||..+..+..|..+|...++... .+.+.+++++
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s-------- 206 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSS-------- 206 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceecc--------
Confidence 4578999999999999999999999999999999999999999999988866655332 4445565554
Q ss_pred ccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCcccccc
Q 000685 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIP 158 (1352)
Q Consensus 80 ~~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~ 158 (1352)
.||.+|+=.+...... ......+.|.+.|..++.-|+.+.-|.+++.|+.+ .+|+.........
T Consensus 207 -------------~dgqvr~s~i~~t~~~--e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~ 271 (559)
T KOG1334|consen 207 -------------RDGQVRVSEILETGYV--ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKF 271 (559)
T ss_pred -------------ccCceeeeeeccccce--ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCcccee
Confidence 4666666554332222 11233455578899999999888889999999988 4587765433222
Q ss_pred cc-ccCCC---CeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCC------eEEEEEec-----CCCCCeeEEEEeee
Q 000685 159 KQ-ELDNK---SLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW------KLVRRYTG-----GHKGSISCLMTFMA 223 (1352)
Q Consensus 159 ~~-~~h~~---~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~------~~i~~l~~-----gH~~~V~slawf~~ 223 (1352)
.. ..+.. ....++..|. +..++++|+.|..+++||.+.- ..+.++.. ...-.|+|+. +
T Consensus 272 ~cr~~~~~~~v~L~~Ia~~P~----nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~---Y 344 (559)
T KOG1334|consen 272 VCREADEKERVGLYTIAVDPR----NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLV---Y 344 (559)
T ss_pred eeeccCCccceeeeeEecCCC----CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEE---e
Confidence 22 22222 5567888542 3458999999999999998642 22333331 2234688887 7
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCCc--c-----ceeccccccccccc--ceEEEEeeccCCCCCEEEEEECCCcEEEEE
Q 000685 224 SSGEALLVSGGSDGLLILWSADHGQD--S-----RELVPKLSLKAHDG--GVVAVELSRVMGGSPQLITIGADKTLAIWD 294 (1352)
Q Consensus 224 s~dg~~LaSgS~DGtVrVWDl~tg~~--~-----~~~~~~~~l~gH~~--~V~slafsp~~~dg~~LaSgs~DgtV~IWD 294 (1352)
+.++.-|.++-.|-.|.++.-.-+.- . ++-.....++||.. .|..+-|.- +...|+++||+=|.|.||+
T Consensus 345 sh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfG--PrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 345 SHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFG--PRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred cCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeecc--CccceEEecCccceEEEEe
Confidence 77777777778888999995432211 0 00011234688875 377777653 2678999999999999999
Q ss_pred CCCCeEEEEecCCCcccccCCceeEEEeCCCCCEEE-EecCC--eEEecc
Q 000685 295 TVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILT-CVKDS--HIWAIE 341 (1352)
Q Consensus 295 l~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lLS-~s~Dg--~IWDi~ 341 (1352)
-.+++.++- +.+...-|+|+.-||.-.+|+ +|-|. +||-..
T Consensus 423 K~t~eii~~------MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 423 KKTGEIIRF------MEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred cchhHHHHH------hhcccceEeccCCCCCCchhhccCCccceeeecCC
Confidence 998887765 455555888999999988884 55444 699764
No 184
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=1.6e-12 Score=144.37 Aligned_cols=263 Identities=10% Similarity=0.082 Sum_probs=178.2
Q ss_pred eEEecCCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCcEEEEEeccCcc--ceEEec--cccceeEecccccCCC
Q 000685 4 LKAFRPTNDKIVKIQLHPT--HPWLVTADASDHVSVWNWEHRQVIYELKAGGVD--QRRLVG--AKLEKLAEGELEHKGK 77 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPd--g~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~--~i~~vs--~dg~~Lasgs~d~~g~ 77 (1352)
++.|++|...++.+.|..+ ..-+.+|+.||+|++||+++...+..+...... ...++. ..++.++.|..-.
T Consensus 63 l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~--- 139 (376)
T KOG1188|consen 63 LEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELT--- 139 (376)
T ss_pred hheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccc---
Confidence 6789999999999999873 458889999999999999987776666543332 222333 2455555553110
Q ss_pred ccccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccc-
Q 000685 78 PTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGR- 155 (1352)
Q Consensus 78 ~l~~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~- 155 (1352)
+ .+-.+.+||++..+.. .......|...|+++.|+|+.+.+|++|+.||.+ ++|.....-.
T Consensus 140 -------~-------s~A~v~lwDvR~~qq~---l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeD 202 (376)
T KOG1188|consen 140 -------R-------SDASVVLWDVRSEQQL---LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEED 202 (376)
T ss_pred -------c-------CceEEEEEEeccccch---hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchh
Confidence 0 4668999999987663 2455566688999999999999999999999999 5587654322
Q ss_pred cccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecC-----------CCCCeeEEEEeeeC
Q 000685 156 DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGG-----------HKGSISCLMTFMAS 224 (1352)
Q Consensus 156 ~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~g-----------H~~~V~slawf~~s 224 (1352)
.+....-+...|.++.|+ ++.-+.|.+-+...+..+|+++.+.+...+... .-.++... ..+
T Consensus 203 aL~~viN~~sSI~~igw~----~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~---~~~ 275 (376)
T KOG1188|consen 203 ALLHVINHGSSIHLIGWL----SKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE---HSP 275 (376)
T ss_pred hHHHhhcccceeeeeeee----cCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec---ccC
Confidence 222234467789999995 333356888899999999999987655444211 11122211 124
Q ss_pred CCCCEEEEEeC-CCcEEEEeCCCCCccceecccccccc-cccceEEEEeeccCCCCCEEEEEECCCcEEEEECC
Q 000685 225 SGEALLVSGGS-DGLLILWSADHGQDSRELVPKLSLKA-HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV 296 (1352)
Q Consensus 225 ~dg~~LaSgS~-DGtVrVWDl~tg~~~~~~~~~~~l~g-H~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~ 296 (1352)
.+...++.++. -|+..++-+..........+...+.+ |..-|.++.|.. .+.++.|||.||.+.+|...
T Consensus 276 ~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~---~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 276 GDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDV---KNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred CCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhc---ccceeeccCCCceEEEEecC
Confidence 45566666555 66666665542111111122334555 777788888876 67899999999999999963
No 185
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.45 E-value=1.1e-12 Score=144.30 Aligned_cols=235 Identities=15% Similarity=0.168 Sum_probs=172.1
Q ss_pred CCEEEEEEc-------CCCCEEEEEeCCCcEEEEECCCCcEEEEEec-cCccce---EE--eccccceeEecccccCCCc
Q 000685 12 DKIVKIQLH-------PTHPWLVTADASDHVSVWNWEHRQVIYELKA-GGVDQR---RL--VGAKLEKLAEGELEHKGKP 78 (1352)
Q Consensus 12 ~~V~~lafS-------Pdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~-~~~~~i---~~--vs~dg~~Lasgs~d~~g~~ 78 (1352)
..|....|- |+..++++.+.+.-|++||.-+|+...++.. .|.+.+ .+ .++||..|..|
T Consensus 105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-------- 176 (406)
T KOG2919|consen 105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-------- 176 (406)
T ss_pred CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec--------
Confidence 345555553 5667899999999999999999999887764 233332 23 33999999887
Q ss_pred cccccCCceEEEEEcCCeEEEEEcCC-ccccccccccc---cccCCCCeeeeeecCCCCeEEEEEecCcEEEE-EeeCCc
Q 000685 79 TEAMRGGSVKQVNFYDDDVRFWQLWR-NRAAAAEAPTA---VSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMR 153 (1352)
Q Consensus 79 l~~l~~g~V~sVaF~Dg~IrlWDl~t-~~~i~~~~~~~---~~~~~~~V~slafspdg~~lLasgs~D~~I~w-Dl~t~~ 153 (1352)
+..+||++|+.. ++... ...+. .....+.+.+++|+|-....++.|+..+.+-+ +...+.
T Consensus 177 --------------ykrcirvFdt~RpGr~c~-vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~ 241 (406)
T KOG2919|consen 177 --------------YKRCIRVFDTSRPGRDCP-VYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR 241 (406)
T ss_pred --------------ccceEEEeeccCCCCCCc-chhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC
Confidence 478999999944 43221 11111 11225679999999977668999998888844 444332
Q ss_pred cccccccccCCCCeEEEEEeeccccCCCCEEEEEE-CCCcEEEEECCC-CeEEEEEecCCCC-CeeEEEEeeeCCCCCEE
Q 000685 154 GRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGS-SDGVIRVLSMIS-WKLVRRYTGGHKG-SISCLMTFMASSGEALL 230 (1352)
Q Consensus 154 ~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs-~DGtIrIWDl~t-~~~i~~l~~gH~~-~V~slawf~~s~dg~~L 230 (1352)
.+....+|.+.|+.+.| .++|+.|.+|. .|-.|..||++. ..++..+. .|.. .-..| .|...|++++|
T Consensus 242 --pl~llggh~gGvThL~~-----~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~-rhv~~TNQRI-~FDld~~~~~L 312 (406)
T KOG2919|consen 242 --PLQLLGGHGGGVTHLQW-----CEDGNKLFSGARKDDKILCWDIRYSRDPVYALE-RHVGDTNQRI-LFDLDPKGEIL 312 (406)
T ss_pred --ceeeecccCCCeeeEEe-----ccCcCeecccccCCCeEEEEeehhccchhhhhh-hhccCccceE-EEecCCCCcee
Confidence 34456789999999999 67999999998 467899999985 45555554 6765 33344 56788999999
Q ss_pred EEEeCCCcEEEEeCCC-CCccceecccccccccccceEEEEeeccCCCCCEEEEEECC
Q 000685 231 VSGGSDGLLILWSADH-GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGAD 287 (1352)
Q Consensus 231 aSgS~DGtVrVWDl~t-g~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~D 287 (1352)
++|+.||.|++||+.. +.. ...+..|+..|+.++++| --.++++++..
T Consensus 313 asG~tdG~V~vwdlk~~gn~------~sv~~~~sd~vNgvslnP---~mpilatssGq 361 (406)
T KOG2919|consen 313 ASGDTDGSVRVWDLKDLGNE------VSVTGNYSDTVNGVSLNP---IMPILATSSGQ 361 (406)
T ss_pred eccCCCccEEEEecCCCCCc------ccccccccccccceecCc---ccceeeeccCc
Confidence 9999999999999987 442 233677899999999999 56788887754
No 186
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=2.4e-11 Score=129.24 Aligned_cols=247 Identities=14% Similarity=0.223 Sum_probs=161.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCCceEEEE
Q 000685 12 DKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVN 91 (1352)
Q Consensus 12 ~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~sVa 91 (1352)
..|.+-+++|.+++|+.|..+|.|-+..+.+- .+++...
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl------------------------~s~sa~~----------------- 49 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSL------------------------DSGSAEP----------------- 49 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhh------------------------hccccCC-----------------
Confidence 45777789999999999999999999987641 1111110
Q ss_pred EcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEEEeeCC----ccccc-----ccc--
Q 000685 92 FYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTM----RGRDI-----PKQ-- 160 (1352)
Q Consensus 92 F~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl~t~----~~~~i-----~~~-- 160 (1352)
.|...+ ... ..|+.+++.++|+. .+|.+|+++.+.-|-+... .++.+ +..
T Consensus 50 --~gk~~i-------------v~e-qahdgpiy~~~f~d---~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~ 110 (325)
T KOG0649|consen 50 --PGKLKI-------------VPE-QAHDGPIYYLAFHD---DFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVD 110 (325)
T ss_pred --CCCcce-------------eec-cccCCCeeeeeeeh---hheeeccCceEEEeeehhhhhhccchhhhhhcCccccC
Confidence 111111 111 22377788888883 2777777754445533221 11111 111
Q ss_pred ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEE
Q 000685 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240 (1352)
Q Consensus 161 ~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVr 240 (1352)
...-..|+++-. .|..+-+++++.|+.+.-||+++|+..+.+. ||+++|.|+. .-.....++||+.||++|
T Consensus 111 ~~evPeINam~l-----dP~enSi~~AgGD~~~y~~dlE~G~i~r~~r-GHtDYvH~vv---~R~~~~qilsG~EDGtvR 181 (325)
T KOG0649|consen 111 AVEVPEINAMWL-----DPSENSILFAGGDGVIYQVDLEDGRIQREYR-GHTDYVHSVV---GRNANGQILSGAEDGTVR 181 (325)
T ss_pred cccCCccceeEe-----ccCCCcEEEecCCeEEEEEEecCCEEEEEEc-CCcceeeeee---ecccCcceeecCCCccEE
Confidence 112346788877 5556667777799999999999999999998 9999999996 334455788999999999
Q ss_pred EEeCCCCCccceeccc---ccccccc-cceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCc
Q 000685 241 LWSADHGQDSRELVPK---LSLKAHD-GGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVA 316 (1352)
Q Consensus 241 VWDl~tg~~~~~~~~~---~~l~gH~-~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~ 316 (1352)
+||.++++++..+.+. ..++.|- .+|.+++.+ ..+|++|+ ...+.+|.+++.++...|. +.+|
T Consensus 182 vWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~-----edWlvCGg-Gp~lslwhLrsse~t~vfp----ipa~--- 248 (325)
T KOG0649|consen 182 VWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN-----EDWLVCGG-GPKLSLWHLRSSESTCVFP----IPAR--- 248 (325)
T ss_pred EEeccccceeEEeccccChhhcCcccCceeEEEecc-----CceEEecC-CCceeEEeccCCCceEEEe----cccc---
Confidence 9999999987764332 1233333 457777764 46888776 4678999999998887763 2333
Q ss_pred eeEEEeCCCCCEEEEecCCe--EEecc
Q 000685 317 SWCHPRAPNLDILTCVKDSH--IWAIE 341 (1352)
Q Consensus 317 V~svafspdg~lLS~s~Dg~--IWDi~ 341 (1352)
|..+.|..| .++++|+... -|.++
T Consensus 249 v~~v~F~~d-~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 249 VHLVDFVDD-CVLIGGEGNHVQSYTLN 274 (325)
T ss_pred eeEeeeecc-eEEEeccccceeeeeec
Confidence 334556443 3556665544 36554
No 187
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.43 E-value=9.3e-12 Score=137.03 Aligned_cols=352 Identities=12% Similarity=0.113 Sum_probs=206.6
Q ss_pred eeeecCCCCeEEEEEecCcEEEEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEE-EECCCcEEEEECCCCeE
Q 000685 125 SPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAF-GSSDGVIRVLSMISWKL 203 (1352)
Q Consensus 125 slafspdg~~lLasgs~D~~I~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~Las-Gs~DGtIrIWDl~t~~~ 203 (1352)
-++|||+|+ +++++++-+.++=|..+.+...+.. --+.|.-+.| +.|..+++. .+.|+.|.+|++...+.
T Consensus 13 ~c~fSp~g~-yiAs~~~yrlviRd~~tlq~~qlf~---cldki~yieW-----~ads~~ilC~~yk~~~vqvwsl~Qpew 83 (447)
T KOG4497|consen 13 FCSFSPCGN-YIASLSRYRLVIRDSETLQLHQLFL---CLDKIVYIEW-----KADSCHILCVAYKDPKVQVWSLVQPEW 83 (447)
T ss_pred ceeECCCCC-eeeeeeeeEEEEeccchhhHHHHHH---HHHHhhheee-----eccceeeeeeeeccceEEEEEeeccee
Confidence 357999998 9999988866655887765433211 1456777888 567766555 46788999999998888
Q ss_pred EEEEecCCCCCeeEEEEeeeCCCCC-EEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEE
Q 000685 204 VRRYTGGHKGSISCLMTFMASSGEA-LLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLI 282 (1352)
Q Consensus 204 i~~l~~gH~~~V~slawf~~s~dg~-~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~La 282 (1352)
..++. ....++.+++ .+|+|+ +|.+..-|-+|.+|.+.+.+... +.-.+..+..++|+| |+++.+
T Consensus 84 ~ckId-eg~agls~~~---WSPdgrhiL~tseF~lriTVWSL~t~~~~~-------~~~pK~~~kg~~f~~---dg~f~a 149 (447)
T KOG4497|consen 84 YCKID-EGQAGLSSIS---WSPDGRHILLTSEFDLRITVWSLNTQKGYL-------LPHPKTNVKGYAFHP---DGQFCA 149 (447)
T ss_pred EEEec-cCCCcceeee---ECCCcceEeeeecceeEEEEEEeccceeEE-------ecccccCceeEEECC---CCceee
Confidence 88887 5667788887 489984 55667779999999999876533 232344578899999 888888
Q ss_pred EEECCCcEEEEEC---CCCeEEEEecCCCcccccCCceeEEEeCCCCCEEEEecCCeEEeccCCcccccccCccccCCCC
Q 000685 283 TIGADKTLAIWDT---VSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAIEHPTYSALTRPLCELSSLV 359 (1352)
Q Consensus 283 Sgs~DgtV~IWDl---~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lLS~s~Dg~IWDi~t~~~~~~~~~l~~~~~~~ 359 (1352)
.++.-...-.+.+ .....++. +...+...+.+.|+|||..++. ||---.
T Consensus 150 i~sRrDCkdyv~i~~c~~W~ll~~------f~~dT~DltgieWsPdg~~laV------wd~~Le---------------- 201 (447)
T KOG4497|consen 150 ILSRRDCKDYVQISSCKAWILLKE------FKLDTIDLTGIEWSPDGNWLAV------WDNVLE---------------- 201 (447)
T ss_pred eeecccHHHHHHHHhhHHHHHHHh------cCCCcccccCceECCCCcEEEE------ecchhh----------------
Confidence 7775322112222 22223333 2334445668999999988765 764311
Q ss_pred CCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCCCCCccccCCCCCCCCce--EEEEecCe-EEEEEeeec
Q 000685 360 PPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPLPTPSGSRDHS--AVYIVERE-LKLVNFQLS 436 (1352)
Q Consensus 360 ~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~i~~l~~~s~s~~~~--~~~~~~~~-lkl~~fq~~ 436 (1352)
...+..+.+..+..+.|+| .+.++++|+.|+.+ |+.+.-+-.++..+..+..-.+.. ++|-.... +++. ....
T Consensus 202 -ykv~aYe~~lG~k~v~wsP-~~qflavGsyD~~l-rvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~-~~cL 277 (447)
T KOG4497|consen 202 -YKVYAYERGLGLKFVEWSP-CNQFLAVGSYDQML-RVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLL-HHCL 277 (447)
T ss_pred -heeeeeeeccceeEEEecc-ccceEEeeccchhh-hhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhc-cccc
Confidence 1122334444789999999 67889999999996 777655444433332222211111 11110000 0000 0000
Q ss_pred cCCCCCCCCCcccccCCcccCCCchhhhhhh-ccccccccC--CCCCccEEEEcCCCCEEEEEECC-CCcEEEEEeCCce
Q 000685 437 SAANPSLGNNGSLSETGRLKGDLPDALQIKQ-IKKHISTPV--PHDSYSILSVSSSGKYLAVVWPD-IPYFSVYKVSDWS 512 (1352)
Q Consensus 437 ~~~n~~~g~~~~~s~~G~~~~~~~~~l~v~~-~~r~i~t~~--~~e~~s~l~~SpdGrylavv~~~-~g~y~Iy~i~~~~ 512 (1352)
.-.+...+....-.+.-+ ......... .+....+-. +..+...+++|+|..|++-.++. -+...||++.+.+
T Consensus 278 sf~p~~~~a~~~~~se~~----YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~ 353 (447)
T KOG4497|consen 278 SFTPTDLEAHIWEESETI----YEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK 353 (447)
T ss_pred ccCCCccccCccccchhh----hhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh
Confidence 001111100000000000 000000000 001111222 23334589999999999665442 2456688887755
Q ss_pred E----eeccceeEEEeccCCCeEEEEe
Q 000685 513 I----VDSGSARLLAWDTCRDRFAILE 535 (1352)
Q Consensus 513 ~----i~~G~~~~~aWs~~~~~fAvl~ 535 (1352)
+ +....++.+.|+|++.++++..
T Consensus 354 l~avLiQk~piraf~WdP~~prL~vct 380 (447)
T KOG4497|consen 354 LHAVLIQKHPIRAFEWDPGRPRLVVCT 380 (447)
T ss_pred hhhhhhhccceeEEEeCCCCceEEEEc
Confidence 4 3356689999999999999984
No 188
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=2.8e-11 Score=148.28 Aligned_cols=294 Identities=14% Similarity=0.156 Sum_probs=196.2
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--C--cEEEEEeccCccceEEec--cccceeEecccccCCCccccc
Q 000685 9 PTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEH--R--QVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAM 82 (1352)
Q Consensus 9 gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~t--g--~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~~l 82 (1352)
.|+-.++|.++||+++++|+|..||.|.+|.--. + .....++. |.+.+.++. ++|.+|.+|+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW-H~~~V~~L~fS~~G~~LlSGG----------- 270 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW-HHDEVNSLSFSSDGAYLLSGG----------- 270 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe-cccccceeEEecCCceEeecc-----------
Confidence 4666689999999999999999999999997321 1 12334443 345666555 8999999986
Q ss_pred cCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEEEeeCCcccc-cccc-
Q 000685 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRD-IPKQ- 160 (1352)
Q Consensus 83 ~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl~t~~~~~-i~~~- 160 (1352)
.++.+.+|.+.+++. ...-...+.|..+.++||+..+.++..++.++.+...++..+. +...
T Consensus 271 ----------~E~VLv~Wq~~T~~k------qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~ 334 (792)
T KOG1963|consen 271 ----------REGVLVLWQLETGKK------QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIK 334 (792)
T ss_pred ----------cceEEEEEeecCCCc------ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCcc
Confidence 588999999999863 1222336679999999999956555666555566554333211 1111
Q ss_pred -------ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEe----cCCCC------CeeEEEEeee
Q 000685 161 -------ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYT----GGHKG------SISCLMTFMA 223 (1352)
Q Consensus 161 -------~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~----~gH~~------~V~slawf~~ 223 (1352)
....+-.+.+.+ +|.-+.++..+..|.|.+||+.+.+.+..+. .-+.+ .++.+. .
T Consensus 335 ~~~~~~k~~~~~l~t~~~i-----dpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~---~ 406 (792)
T KOG1963|consen 335 PPTPSTKTRPQSLTTGVSI-----DPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVA---R 406 (792)
T ss_pred CCCccccccccccceeEEE-----cCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeeh---h
Confidence 112445566777 5656678888899999999998876665542 11222 344443 5
Q ss_pred CCCCCEEEEEe--------CCC--cEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEE
Q 000685 224 SSGEALLVSGG--------SDG--LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIW 293 (1352)
Q Consensus 224 s~dg~~LaSgS--------~DG--tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IW 293 (1352)
+..|.+++|.- .|| .+|+|-.........+.. .....|+..+...++.+. .....++++|.||.++||
T Consensus 407 ~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T-~I~~PH~~~~vat~~~~~-~rs~~~vta~~dg~~KiW 484 (792)
T KOG1963|consen 407 SRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNT-KINNPHGNAFVATIFLNP-TRSVRCVTASVDGDFKIW 484 (792)
T ss_pred hccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEE-EEecCCCceeEEEEEecC-cccceeEEeccCCeEEEE
Confidence 56688888753 333 477898765543322211 123568887777777663 123389999999999999
Q ss_pred ECCCCeEEE------EecCCCcccccCCceeEEEeCCCCCEEEEecCCe--EEeccC
Q 000685 294 DTVSFKELR------RIKPVPKLACHSVASWCHPRAPNLDILTCVKDSH--IWAIEH 342 (1352)
Q Consensus 294 Dl~tg~~l~------~~~~~~~l~~hs~~V~svafspdg~lLS~s~Dg~--IWDi~t 342 (1352)
-+...+.+. +...+ -..|...+.+++|+.||.+|++|.|++ |||..+
T Consensus 485 ~~~~~~n~~k~~s~W~c~~i--~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 485 VFTDDSNIYKKSSNWTCKAI--GSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred EEecccccCcCccceEEeee--eccccCcccchhhcCCCcEEEEecCCEEEEecCCC
Confidence 884322111 11111 124778889999999999999999986 899986
No 189
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.40 E-value=7e-13 Score=159.44 Aligned_cols=222 Identities=20% Similarity=0.266 Sum_probs=155.2
Q ss_pred ccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCC
Q 000685 157 IPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSD 236 (1352)
Q Consensus 157 i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~D 236 (1352)
+..+.+|...|.|+.| ...|.+|++|++|..++||.+.+..++.... ||.+.|+.++ .+.+..+++++|.|
T Consensus 183 ikrLlgH~naVyca~f-----Drtg~~Iitgsdd~lvKiwS~et~~~lAs~r-Ghs~ditdla---vs~~n~~iaaaS~D 253 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIF-----DRTGRYIITGSDDRLVKIWSMETARCLASCR-GHSGDITDLA---VSSNNTMIAAASND 253 (1113)
T ss_pred HHHHHhhhhheeeeee-----ccccceEeecCccceeeeeeccchhhhccCC-CCccccchhc---cchhhhhhhhcccC
Confidence 4456789999999999 7789999999999999999999999999998 9999999997 78888999999999
Q ss_pred CcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCc
Q 000685 237 GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVA 316 (1352)
Q Consensus 237 GtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~ 316 (1352)
..|++|.+..+..+. .+.||.+.|++++|+|. .+.+.||++++||.+ ............+. ...-
T Consensus 254 ~vIrvWrl~~~~pvs------vLrghtgavtaiafsP~-------~sss~dgt~~~wd~r-~~~~~y~prp~~~~-~~~~ 318 (1113)
T KOG0644|consen 254 KVIRVWRLPDGAPVS------VLRGHTGAVTAIAFSPR-------ASSSDDGTCRIWDAR-LEPRIYVPRPLKFT-EKDL 318 (1113)
T ss_pred ceEEEEecCCCchHH------HHhccccceeeeccCcc-------ccCCCCCceEecccc-ccccccCCCCCCcc-cccc
Confidence 999999999987544 48999999999999992 178899999999987 22111100000111 1122
Q ss_pred eeEEEeCCCCC-EEEEecCCe--EEeccCCccccc----------------------ccCccccCCCCCCeEEecCCccc
Q 000685 317 SWCHPRAPNLD-ILTCVKDSH--IWAIEHPTYSAL----------------------TRPLCELSSLVPPQVLAHHKKLR 371 (1352)
Q Consensus 317 V~svafspdg~-lLS~s~Dg~--IWDi~t~~~~~~----------------------~~~l~~~~~~~~~~~l~~h~~~~ 371 (1352)
+.++.|...+. .++++.|+. .|.+....+... .--.|..-.......+.+|.+ .
T Consensus 319 ~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd-~ 397 (1113)
T KOG0644|consen 319 VDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD-E 397 (1113)
T ss_pred eeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc-c
Confidence 33444444443 445555552 222211000000 000011111122334456666 8
Q ss_pred EEEEEEecCCCcEEEEEECCCeEEEEecCCCCC
Q 000685 372 VYCMVAHSLQPHLVATGTNVGVIISEFDPRSLP 404 (1352)
Q Consensus 372 V~~la~sp~~~~lLatGs~DG~IlriWd~~~~p 404 (1352)
++.+.+||-++....+++.||.+ .+||+-+..
T Consensus 398 ~yvLd~Hpfn~ri~msag~dgst-~iwdi~eg~ 429 (1113)
T KOG0644|consen 398 VYVLDVHPFNPRIAMSAGYDGST-IIWDIWEGI 429 (1113)
T ss_pred eeeeeecCCCcHhhhhccCCCce-EeeecccCC
Confidence 99999999988888889999997 599977543
No 190
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.40 E-value=2.9e-11 Score=148.40 Aligned_cols=273 Identities=16% Similarity=0.140 Sum_probs=187.4
Q ss_pred CCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccc----cccccCCCCeE
Q 000685 94 DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDI----PKQELDNKSLV 168 (1352)
Q Consensus 94 Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i----~~~~~h~~~V~ 168 (1352)
++.+.+|++..... +.........|.+++|+|..+.++++|+.+|.| .||...+..... .....|..++.
T Consensus 221 ~~~~~vW~~~~p~~-----Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~ 295 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNT-----PELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVT 295 (555)
T ss_pred CceEEEEecCCCCC-----ceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeE
Confidence 35789999987622 334444477899999999998899999999988 678876654211 12356788999
Q ss_pred EEEEeeccccCCCCEEEEEECCCcEEEEECCCCeE-EEEE----e------cCCCCCeeEEEEeeeCCCCCEEEEEeCCC
Q 000685 169 CMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKL-VRRY----T------GGHKGSISCLMTFMASSGEALLVSGGSDG 237 (1352)
Q Consensus 169 ~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~-i~~l----~------~gH~~~V~slawf~~s~dg~~LaSgS~DG 237 (1352)
.+.|.. ++.+.-+++++.||.|..|+++.-.. .... . ......++++. +...+.+.|+.|+.+|
T Consensus 296 ~vvW~~---~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~--F~~~~p~~FiVGTe~G 370 (555)
T KOG1587|consen 296 AVVWLQ---NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLK--FEPTDPNHFIVGTEEG 370 (555)
T ss_pred EEEEec---cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEe--eccCCCceEEEEcCCc
Confidence 999965 34446699999999999998874322 1111 0 01234567776 2556778899999999
Q ss_pred cEEEEe---CCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECC-CCeEEEEecCCCccccc
Q 000685 238 LLILWS---ADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV-SFKELRRIKPVPKLACH 313 (1352)
Q Consensus 238 tVrVWD---l~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~-tg~~l~~~~~~~~l~~h 313 (1352)
.|..=+ ...... ..+.+...+..|.++|+++.++|. ....+.+++ |.+|+||... ...++.. +..+
T Consensus 371 ~v~~~~r~g~~~~~~-~~~~~~~~~~~h~g~v~~v~~nPF--~~k~fls~g-DW~vriWs~~~~~~Pl~~------~~~~ 440 (555)
T KOG1587|consen 371 KVYKGCRKGYTPAPE-VSYKGHSTFITHIGPVYAVSRNPF--YPKNFLSVG-DWTVRIWSEDVIASPLLS------LDSS 440 (555)
T ss_pred EEEEEeccCCccccc-ccccccccccccCcceEeeecCCC--ccceeeeec-cceeEeccccCCCCcchh------hhhc
Confidence 987632 222210 112334456789999999999995 344555555 9999999976 3333333 4667
Q ss_pred CCceeEEEeCCCCC--EEEEecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEE
Q 000685 314 SVASWCHPRAPNLD--ILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGT 389 (1352)
Q Consensus 314 s~~V~svafspdg~--lLS~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs 389 (1352)
...|++++|||-.. ++++..||. |||+..... .|+.+...+.. ...++.|++ .+.+|++|.
T Consensus 441 ~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~-------------~Pv~s~~~~~~-~l~~~~~s~-~g~~lavGd 505 (555)
T KOG1587|consen 441 PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE-------------EPVLSQKVCSP-ALTRVRWSP-NGKLLAVGD 505 (555)
T ss_pred cceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc-------------CCccccccccc-ccceeecCC-CCcEEEEec
Confidence 77799999999876 335667886 899986532 23333333322 667778887 688899999
Q ss_pred CCCeEEEEecCCC
Q 000685 390 NVGVIISEFDPRS 402 (1352)
Q Consensus 390 ~DG~IlriWd~~~ 402 (1352)
..|.+ ++|++.+
T Consensus 506 ~~G~~-~~~~l~~ 517 (555)
T KOG1587|consen 506 ANGTT-HILKLSE 517 (555)
T ss_pred CCCcE-EEEEcCc
Confidence 99997 6888753
No 191
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.37 E-value=1.7e-11 Score=138.80 Aligned_cols=253 Identities=17% Similarity=0.161 Sum_probs=173.1
Q ss_pred CCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCCceEE
Q 000685 11 NDKIVKIQLHPTHP-WLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQ 89 (1352)
Q Consensus 11 s~~V~~lafSPdg~-~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~s 89 (1352)
...|..+.|+++.. .|+||+.|..|+||-+..+..- +.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~--------------------------------------~~--- 51 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPG--------------------------------------GG--- 51 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCC--------------------------------------CC---
Confidence 36799999999877 9999999999999997642210 00
Q ss_pred EEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEEEeeC--------C------c-c
Q 000685 90 VNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVT--------M------R-G 154 (1352)
Q Consensus 90 VaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl~t--------~------~-~ 154 (1352)
+..|.. .....+|...|+++.|+|+|+ +|++|++++.+.++... . + .
T Consensus 52 ----~~~V~y-------------~s~Ls~H~~aVN~vRf~p~ge-lLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w 113 (434)
T KOG1009|consen 52 ----DMKVEY-------------LSSLSRHTRAVNVVRFSPDGE-LLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKW 113 (434)
T ss_pred ----ceeEEE-------------eecccCCcceeEEEEEcCCcC-eeeecCCCceEEEEEecCcCCccccchhhhCccce
Confidence 111111 122334488899999999998 99999999999543322 1 0 1
Q ss_pred ccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEe
Q 000685 155 RDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGG 234 (1352)
Q Consensus 155 ~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS 234 (1352)
.......+|.+.|..++| ++++.++++|+.|.++++||+..|.....+. +|.++|..++| .|-++++++-|
T Consensus 114 ~v~k~lr~h~~diydL~W-----s~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~-dh~~yvqgvaw---Dpl~qyv~s~s 184 (434)
T KOG1009|consen 114 VVKKVLRGHRDDIYDLAW-----SPDSNFLVSGSVDNSVRLWDVHAGQLLAILD-DHEHYVQGVAW---DPLNQYVASKS 184 (434)
T ss_pred EEEEEecccccchhhhhc-----cCCCceeeeeeccceEEEEEeccceeEeecc-ccccccceeec---chhhhhhhhhc
Confidence 112234678899999999 7899999999999999999999999988886 99999999985 67777777777
Q ss_pred CCCcEEEEeCCCCCc----------------------------------------------------------c-c--e-
Q 000685 235 SDGLLILWSADHGQD----------------------------------------------------------S-R--E- 252 (1352)
Q Consensus 235 ~DGtVrVWDl~tg~~----------------------------------------------------------~-~--~- 252 (1352)
.|+..+.+.+...+. . . .
T Consensus 185 ~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tY 264 (434)
T KOG1009|consen 185 SDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSY 264 (434)
T ss_pred cCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeE
Confidence 777555544321000 0 0 0
Q ss_pred -------ecccccccccccceEEEEeeccC-------CC-------CCEEEEEECCCcEEEEECCCCeEEEEecCCCccc
Q 000685 253 -------LVPKLSLKAHDGGVVAVELSRVM-------GG-------SPQLITIGADKTLAIWDTVSFKELRRIKPVPKLA 311 (1352)
Q Consensus 253 -------~~~~~~l~gH~~~V~slafsp~~-------~d-------g~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~ 311 (1352)
..|...+.+-...+..+.|+|.. .. .++++.....+.|.|||.++..++... -.
T Consensus 265 vfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v-----~n 339 (434)
T KOG1009|consen 265 VFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVV-----DN 339 (434)
T ss_pred eeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEE-----ee
Confidence 00111222333445556666531 01 123334444578999998887766653 34
Q ss_pred ccCCceeEEEeCCCCCEE-EEecCCe
Q 000685 312 CHSVASWCHPRAPNLDIL-TCVKDSH 336 (1352)
Q Consensus 312 ~hs~~V~svafspdg~lL-S~s~Dg~ 336 (1352)
-|-.+++.++|++||..+ ..|.||.
T Consensus 340 ihy~~iTDiaws~dg~~l~vSS~DGy 365 (434)
T KOG1009|consen 340 IHYSAITDIAWSDDGSVLLVSSTDGF 365 (434)
T ss_pred eeeeeecceeecCCCcEEEEeccCCc
Confidence 578899999999999855 6788885
No 192
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.36 E-value=3.7e-11 Score=147.38 Aligned_cols=251 Identities=12% Similarity=0.077 Sum_probs=168.5
Q ss_pred CCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcE--EE---EEeccCccceEEec----cccceeEecccccCCCccc
Q 000685 11 NDKIVKIQLHPTHP-WLVTADASDHVSVWNWEHRQV--IY---ELKAGGVDQRRLVG----AKLEKLAEGELEHKGKPTE 80 (1352)
Q Consensus 11 s~~V~~lafSPdg~-~LaTgs~DG~VrVWDl~tg~~--i~---t~~~~~~~~i~~vs----~dg~~Lasgs~d~~g~~l~ 80 (1352)
...|+|+.|+|..+ +|+.|..+|.|.+||+..+.. .. .....|.+.+..+. ....-+++++
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~s--------- 312 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLS--------- 312 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEe---------
Confidence 46799999999766 788888999999999987654 21 22223333333222 1112222222
Q ss_pred cccCCceEEEEEcCCeEEEEEcCCccccccc--cc-----cccccCCCCeeeeeecCCCCeEEEEEecCcEEEE-EeeCC
Q 000685 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAE--AP-----TAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTM 152 (1352)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~--~~-----~~~~~~~~~V~slafspdg~~lLasgs~D~~I~w-Dl~t~ 152 (1352)
.||.|..|+++.-.+-... .. .........+++++|.+..+..+++|++.|.|.- +....
T Consensus 313 ------------sDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 313 ------------SDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ------------cCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 5999999987654331110 00 1111224468899999988889999999999844 33222
Q ss_pred ccc------cccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECC-CCeEEEEEecCCCCCeeEEEEeeeCC
Q 000685 153 RGR------DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI-SWKLVRRYTGGHKGSISCLMTFMASS 225 (1352)
Q Consensus 153 ~~~------~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~-t~~~i~~l~~gH~~~V~slawf~~s~ 225 (1352)
+.. .......|.+.|+++.++| -+..++..+.|.+++||... ...++..+. .+..+|++++|. .-
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nP-----F~~k~fls~gDW~vriWs~~~~~~Pl~~~~-~~~~~v~~vaWS--pt 452 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNP-----FYPKNFLSVGDWTVRIWSEDVIASPLLSLD-SSPDYVTDVAWS--PT 452 (555)
T ss_pred cccccccccccccccccCcceEeeecCC-----CccceeeeeccceeEeccccCCCCcchhhh-hccceeeeeEEc--Cc
Confidence 211 1334567789999999944 45444433349999999987 556666665 788889999973 33
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCC
Q 000685 226 GEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVS 297 (1352)
Q Consensus 226 dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~t 297 (1352)
....|+++..||.|.+||+.....- |..+..-+....+.+.|++ .++.|++|...|++++|++..
T Consensus 453 rpavF~~~d~~G~l~iWDLl~~~~~----Pv~s~~~~~~~l~~~~~s~---~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 453 RPAVFATVDGDGNLDIWDLLQDDEE----PVLSQKVCSPALTRVRWSP---NGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CceEEEEEcCCCceehhhhhccccC----CcccccccccccceeecCC---CCcEEEEecCCCcEEEEEcCc
Confidence 4568999999999999999865432 3333344455567777877 799999999999999999864
No 193
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=1e-11 Score=143.96 Aligned_cols=184 Identities=18% Similarity=0.265 Sum_probs=139.3
Q ss_pred ccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCc
Q 000685 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL 238 (1352)
Q Consensus 159 ~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGt 238 (1352)
.+.+|.+.|+|++| +.+|.+|++||+|-.+.|||.-..+.+..+..||...|.|+. |....+.++++||+.|..
T Consensus 45 eL~GH~GCVN~LeW-----n~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvK-FvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEW-----NADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVK-FVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred hhccccceecceee-----cCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEe-eeccCCCeEEEeccCcce
Confidence 36899999999999 789999999999999999999988998888889999999998 334556778999999999
Q ss_pred EEEEeCCCCCc----cceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccC
Q 000685 239 LILWSADHGQD----SRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHS 314 (1352)
Q Consensus 239 VrVWDl~tg~~----~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs 314 (1352)
|+++|+...+. -....+...+..|...|..++-.| .....+-+++.||+|+-+|++.... ..+.
T Consensus 119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p--~~PhtfwsasEDGtirQyDiREph~----------c~p~ 186 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAP--NGPHTFWSASEDGTIRQYDIREPHV----------CNPD 186 (758)
T ss_pred EEEEecccccccccccCccchhhhhhhhhhhhhheecCC--CCCceEEEecCCcceeeecccCCcc----------CCcc
Confidence 99999985221 111223445678999999999998 2447889999999999999885321 0111
Q ss_pred CceeEEEeCCCCCEEEEecCCeEEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeE
Q 000685 315 VASWCHPRAPNLDILTCVKDSHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVI 394 (1352)
Q Consensus 315 ~~V~svafspdg~lLS~s~Dg~IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~I 394 (1352)
..+-... -++. +.- ....|++.+|.++++|++|+.|-..
T Consensus 187 ~~~~~~l----------------~ny~------------------------~~l-ielk~ltisp~rp~~laVGgsdpfa 225 (758)
T KOG1310|consen 187 EDCPSIL----------------VNYN------------------------PQL-IELKCLTISPSRPYYLAVGGSDPFA 225 (758)
T ss_pred ccccHHH----------------HHhc------------------------hhh-heeeeeeecCCCCceEEecCCCchh
Confidence 1100000 0000 000 1577999999999999999999996
Q ss_pred EEEecCCC
Q 000685 395 ISEFDPRS 402 (1352)
Q Consensus 395 lriWd~~~ 402 (1352)
|++|.|.
T Consensus 226 -rLYD~Rr 232 (758)
T KOG1310|consen 226 -RLYDRRR 232 (758)
T ss_pred -hhhhhhh
Confidence 8999553
No 194
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.35 E-value=5.3e-10 Score=131.82 Aligned_cols=277 Identities=9% Similarity=0.029 Sum_probs=158.2
Q ss_pred cCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEee-CCccccccccccCCCCeEEE
Q 000685 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLV-TMRGRDIPKQELDNKSLVCM 170 (1352)
Q Consensus 93 ~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~-t~~~~~i~~~~~h~~~V~~v 170 (1352)
.++.|++|++.+...+. ..... . .......+.++|+++.+++++..++.+ .|+.. +++...+... .....+..+
T Consensus 10 ~~~~I~~~~~~~~g~l~-~~~~~-~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~~i 85 (330)
T PRK11028 10 ESQQIHVWNLNHEGALT-LLQVV-D-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPTHI 85 (330)
T ss_pred CCCCEEEEEECCCCcee-eeeEE-e-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCceEE
Confidence 58999999996432211 01111 1 134467789999998444544444444 56765 3332222111 123456778
Q ss_pred EEeeccccCCCCEEEEEE-CCCcEEEEECCCC----eEEEEEecCCCCCeeEEEEeeeCCCCCEEE-EEeCCCcEEEEeC
Q 000685 171 EFLSRSAVGDVPLVAFGS-SDGVIRVLSMISW----KLVRRYTGGHKGSISCLMTFMASSGEALLV-SGGSDGLLILWSA 244 (1352)
Q Consensus 171 af~P~s~Spdg~~LasGs-~DGtIrIWDl~t~----~~i~~l~~gH~~~V~slawf~~s~dg~~La-SgS~DGtVrVWDl 244 (1352)
.| +|+++++++++ .++.|.+||+.+. +.+..+. +.....++. ++|++++++ +...++.|.+||+
T Consensus 86 ~~-----~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--~~~~~~~~~---~~p~g~~l~v~~~~~~~v~v~d~ 155 (330)
T PRK11028 86 ST-----DHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE--GLEGCHSAN---IDPDNRTLWVPCLKEDRIRLFTL 155 (330)
T ss_pred EE-----CCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc--CCCcccEeE---eCCCCCEEEEeeCCCCEEEEEEE
Confidence 89 77999888876 4889999999742 2233222 223455555 688988875 4556799999999
Q ss_pred CCCCcccee-cccccccccccceEEEEeeccCCCCCEEEEEEC-CCcEEEEECCC--C--eEEEEecCCCcccccCCcee
Q 000685 245 DHGQDSREL-VPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA-DKTLAIWDTVS--F--KELRRIKPVPKLACHSVASW 318 (1352)
Q Consensus 245 ~tg~~~~~~-~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~-DgtV~IWDl~t--g--~~l~~~~~~~~l~~hs~~V~ 318 (1352)
.+...+... ....... .......+.|+| ++++++++.. +++|.+||+.. + +.++.+.....-..+.....
T Consensus 156 ~~~g~l~~~~~~~~~~~-~g~~p~~~~~~p---dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 231 (330)
T PRK11028 156 SDDGHLVAQEPAEVTTV-EGAGPRHMVFHP---NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAA 231 (330)
T ss_pred CCCCcccccCCCceecC-CCCCCceEEECC---CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccce
Confidence 863322110 0001111 134467899999 7888877765 99999999973 3 23333321111001112233
Q ss_pred EEEeCCCCCEE-EEec-CCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeE
Q 000685 319 CHPRAPNLDIL-TCVK-DSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVI 394 (1352)
Q Consensus 319 svafspdg~lL-S~s~-Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~I 394 (1352)
.+.++|+++++ ++.. ++. +|++..... .. ........ .. ..+.+.++|++.+++++...++.|
T Consensus 232 ~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~------~~-----~~~~~~~~-~~-~p~~~~~~~dg~~l~va~~~~~~v 298 (330)
T PRK11028 232 DIHITPDGRHLYACDRTASLISVFSVSEDGS------VL-----SFEGHQPT-ET-QPRGFNIDHSGKYLIAAGQKSHHI 298 (330)
T ss_pred eEEECCCCCEEEEecCCCCeEEEEEEeCCCC------eE-----EEeEEEec-cc-cCCceEECCCCCEEEEEEccCCcE
Confidence 68899999966 4433 343 788864310 00 00111111 11 345789999655655555568886
Q ss_pred EEEecCC
Q 000685 395 ISEFDPR 401 (1352)
Q Consensus 395 lriWd~~ 401 (1352)
.+|+..
T Consensus 299 -~v~~~~ 304 (330)
T PRK11028 299 -SVYEID 304 (330)
T ss_pred -EEEEEc
Confidence 688654
No 195
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=6.5e-11 Score=126.04 Aligned_cols=230 Identities=17% Similarity=0.178 Sum_probs=153.2
Q ss_pred CeeeeeecCCCCeEEEEEecCcEEEE-EeeC---Cc-----cccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCc
Q 000685 122 GFASPPPSTKGRHFLVICCVNKAIFL-DLVT---MR-----GRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGV 192 (1352)
Q Consensus 122 ~V~slafspdg~~lLasgs~D~~I~w-Dl~t---~~-----~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGt 192 (1352)
.|.+-+++|.++ +|++|..+|.+.+ .+++ +. ...+.....|..+|+.++|+ ..+|++|++ |.
T Consensus 12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~-------d~~Lls~gd-G~ 82 (325)
T KOG0649|consen 12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH-------DDFLLSGGD-GL 82 (325)
T ss_pred HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee-------hhheeeccC-ce
Confidence 355667899887 8999999888843 4432 11 11233447899999999993 557777754 99
Q ss_pred EEEEECCCCeE-------EEEEecCCC-----CCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceeccccccc
Q 000685 193 IRVLSMISWKL-------VRRYTGGHK-----GSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLK 260 (1352)
Q Consensus 193 IrIWDl~t~~~-------i~~l~~gH~-----~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~ 260 (1352)
|+-|.++.... ......-|. -.|+++ | ..|..+-++.++.|+.++.||+++|+..++ ++
T Consensus 83 V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam-~--ldP~enSi~~AgGD~~~y~~dlE~G~i~r~------~r 153 (325)
T KOG0649|consen 83 VYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAM-W--LDPSENSILFAGGDGVIYQVDLEDGRIQRE------YR 153 (325)
T ss_pred EEEeeehhhhhhccchhhhhhcCccccCcccCCcccee-E--eccCCCcEEEecCCeEEEEEEecCCEEEEE------Ec
Confidence 99999864211 111111222 356777 5 466666666677999999999999986555 79
Q ss_pred ccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCc---ccccC-CceeEEEeCCCCCEEEEecCC-
Q 000685 261 AHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPK---LACHS-VASWCHPRAPNLDILTCVKDS- 335 (1352)
Q Consensus 261 gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~---l~~hs-~~V~svafspdg~lLS~s~Dg- 335 (1352)
||.+.|.++.-.. ....+++|+.||++|+||++++++++.+.+... ++.|- ..|-+++. +.+.+.||...
T Consensus 154 GHtDYvH~vv~R~---~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~ 228 (325)
T KOG0649|consen 154 GHTDYVHSVVGRN---ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPK 228 (325)
T ss_pred CCcceeeeeeecc---cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCc
Confidence 9999999998754 467899999999999999999999999876543 23232 23445554 44466555443
Q ss_pred -eEEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeE
Q 000685 336 -HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVI 394 (1352)
Q Consensus 336 -~IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~I 394 (1352)
.||+++... +..++.-. . ++..+.|.. ..+.+++..+.|
T Consensus 229 lslwhLrsse---------------~t~vfpip-a-~v~~v~F~~---d~vl~~G~g~~v 268 (325)
T KOG0649|consen 229 LSLWHLRSSE---------------STCVFPIP-A-RVHLVDFVD---DCVLIGGEGNHV 268 (325)
T ss_pred eeEEeccCCC---------------ceEEEecc-c-ceeEeeeec---ceEEEeccccce
Confidence 499998542 22333222 1 466677665 245566655554
No 196
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=1.8e-11 Score=141.96 Aligned_cols=221 Identities=14% Similarity=0.169 Sum_probs=164.7
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec----cccceeEecccccCCCccc
Q 000685 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG----AKLEKLAEGELEHKGKPTE 80 (1352)
Q Consensus 5 ~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs----~dg~~Lasgs~d~~g~~l~ 80 (1352)
+.|.||++.|+|++|+.+|.+|++|+.|-.+.|||+-..++++.+..+|...|+++. ...+.+++|.
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgA--------- 114 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGA--------- 114 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEecc---------
Confidence 578999999999999999999999999999999999999999999999999999887 4566777775
Q ss_pred cccCCceEEEEEcCCeEEEEEcCCccccc-----cccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEE-EeeCCcc
Q 000685 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAA-----AEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRG 154 (1352)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~-----~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~w-Dl~t~~~ 154 (1352)
.|..|+++|+...+.-. .........|...|..++-.|++++.+-++++||+++= |+.....
T Consensus 115 ------------gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~ 182 (758)
T KOG1310|consen 115 ------------GDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHV 182 (758)
T ss_pred ------------CcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCcc
Confidence 68899999998632211 01112234457788899999999889999999999954 8765321
Q ss_pred cc--------ccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCC--------C----------eEEEEEe
Q 000685 155 RD--------IPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS--------W----------KLVRRYT 208 (1352)
Q Consensus 155 ~~--------i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t--------~----------~~i~~l~ 208 (1352)
.. +.......-...|+..+| .+..+|++|+.|-..++||.+. + .+++.+.
T Consensus 183 c~p~~~~~~~l~ny~~~lielk~ltisp----~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~ 258 (758)
T KOG1310|consen 183 CNPDEDCPSILVNYNPQLIELKCLTISP----SRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS 258 (758)
T ss_pred CCccccccHHHHHhchhhheeeeeeecC----CCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheec
Confidence 10 000111223567888854 2457899999999999999421 1 2455554
Q ss_pred cCCC--------CCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCcc
Q 000685 209 GGHK--------GSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDS 250 (1352)
Q Consensus 209 ~gH~--------~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~ 250 (1352)
.+|- ..++|+....|+|+|..|+..-..-.|.++|+..++..
T Consensus 259 p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 259 PGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred CccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 4443 45777776679999988777666778999999877643
No 197
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.31 E-value=1e-09 Score=129.39 Aligned_cols=254 Identities=10% Similarity=0.086 Sum_probs=156.0
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECC-CCcE--EEEEeccCccceEEeccccceeEecccccCCCccc
Q 000685 5 KAFRPTNDKIVKIQLHPTHPWLVTAD-ASDHVSVWNWE-HRQV--IYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTE 80 (1352)
Q Consensus 5 ~~L~gHs~~V~~lafSPdg~~LaTgs-~DG~VrVWDl~-tg~~--i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~ 80 (1352)
+++. +.+....++|+|++++|++++ .++.|.+|++. +|+. +..........-..+.++++.++++.
T Consensus 29 ~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~--------- 98 (330)
T PRK11028 29 QVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSAS--------- 98 (330)
T ss_pred eEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEE---------
Confidence 4443 346678899999999887664 57899999986 3433 33333222222233447777776653
Q ss_pred cccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCC-ccccc-
Q 000685 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTM-RGRDI- 157 (1352)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~-~~~~i- 157 (1352)
+.++.+.+|++.+...+....... .+ .....+++|+|+++.++++...++.+ +||+.+. .....
T Consensus 99 -----------~~~~~v~v~~~~~~g~~~~~~~~~-~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~ 165 (330)
T PRK11028 99 -----------YNANCVSVSPLDKDGIPVAPIQII-EG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE 165 (330)
T ss_pred -----------cCCCeEEEEEECCCCCCCCceeec-cC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC
Confidence 247899999987432221111111 11 23356788999998666777666666 6688753 22110
Q ss_pred -c-ccccCCCCeEEEEEeeccccCCCCEEEEEEC-CCcEEEEECCC--C--eEEEEEecCC------CCCeeEEEEeeeC
Q 000685 158 -P-KQELDNKSLVCMEFLSRSAVGDVPLVAFGSS-DGVIRVLSMIS--W--KLVRRYTGGH------KGSISCLMTFMAS 224 (1352)
Q Consensus 158 -~-~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~-DGtIrIWDl~t--~--~~i~~l~~gH------~~~V~slawf~~s 224 (1352)
. .........+.+.| +|+++++++++. +++|.+||+.. + +.+..+. .+ ......+. ++
T Consensus 166 ~~~~~~~~g~~p~~~~~-----~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~i~---~~ 236 (330)
T PRK11028 166 PAEVTTVEGAGPRHMVF-----HPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLD-MMPADFSDTRWAADIH---IT 236 (330)
T ss_pred CCceecCCCCCCceEEE-----CCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe-cCCCcCCCCccceeEE---EC
Confidence 0 01112445778999 779999988876 89999999973 3 3344432 11 11222343 79
Q ss_pred CCCCEEEEEe-CCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEEC-CCcEEEEECC
Q 000685 225 SGEALLVSGG-SDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA-DKTLAIWDTV 296 (1352)
Q Consensus 225 ~dg~~LaSgS-~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~-DgtV~IWDl~ 296 (1352)
|++++++++. .+++|.+|++.......++... ... ......+.|+| ++++|+++.. +++|.+|+++
T Consensus 237 pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~--~~~-~~~p~~~~~~~---dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 237 PDGRHLYACDRTASLISVFSVSEDGSVLSFEGH--QPT-ETQPRGFNIDH---SGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEE--Eec-cccCCceEECC---CCCEEEEEEccCCcEEEEEEc
Confidence 9999888875 4789999999654322111111 111 12456789999 7888877665 8999999875
No 198
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.31 E-value=7.7e-12 Score=143.13 Aligned_cols=272 Identities=16% Similarity=0.231 Sum_probs=195.9
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCCceEEEEE
Q 000685 13 KIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNF 92 (1352)
Q Consensus 13 ~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~sVaF 92 (1352)
+=..+.|+.+|++|+.|+.-|.|-.+|+.++++..++...
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~---------------------------------------- 170 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM---------------------------------------- 170 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehh----------------------------------------
Confidence 3467889999999999999999999999998888777522
Q ss_pred cCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEEEeeCCccccccccccCCCCeEEEEE
Q 000685 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEF 172 (1352)
Q Consensus 93 ~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl~t~~~~~i~~~~~h~~~V~~vaf 172 (1352)
..|.++.|-.+.+ +++++....+.++|-..-+..|+ .....|..+.|
T Consensus 171 ----------------------------Etv~Dv~~LHneq-~~AVAQK~y~yvYD~~GtElHCl----k~~~~v~rLeF 217 (545)
T KOG1272|consen 171 ----------------------------ETVRDVTFLHNEQ-FFAVAQKKYVYVYDNNGTELHCL----KRHIRVARLEF 217 (545)
T ss_pred ----------------------------hhhhhhhhhcchH-HHHhhhhceEEEecCCCcEEeeh----hhcCchhhhcc
Confidence 1244555555554 78888777777776554333333 12457888999
Q ss_pred eeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccce
Q 000685 173 LSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRE 252 (1352)
Q Consensus 173 ~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~ 252 (1352)
+| ..-+|++++..|.++.-|+.+|+.+..+. ...+.+..++ .+|-...+-+|...|+|.+|.....+.+-
T Consensus 218 LP-----yHfLL~~~~~~G~L~Y~DVS~GklVa~~~-t~~G~~~vm~---qNP~NaVih~GhsnGtVSlWSP~skePLv- 287 (545)
T KOG1272|consen 218 LP-----YHFLLVAASEAGFLKYQDVSTGKLVASIR-TGAGRTDVMK---QNPYNAVIHLGHSNGTVSLWSPNSKEPLV- 287 (545)
T ss_pred cc-----hhheeeecccCCceEEEeechhhhhHHHH-ccCCccchhh---cCCccceEEEcCCCceEEecCCCCcchHH-
Confidence 76 45588999999999999999999998886 5566777776 67888899999999999999998776443
Q ss_pred ecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEEEEe
Q 000685 253 LVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCV 332 (1352)
Q Consensus 253 ~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lLS~s 332 (1352)
.+..|.++|.+|++.+ +|.|++|.|.|+.++|||+++...+++.. . ......+++|..|-+..+-
T Consensus 288 -----KiLcH~g~V~siAv~~---~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~------t-p~~a~~ls~SqkglLA~~~ 352 (545)
T KOG1272|consen 288 -----KILCHRGPVSSIAVDR---GGRYMATTGLDRKVKIWDLRNFYQLHTYR------T-PHPASNLSLSQKGLLALSY 352 (545)
T ss_pred -----HHHhcCCCcceEEECC---CCcEEeecccccceeEeeeccccccceee------c-CCCccccccccccceeeec
Confidence 3678999999999999 89999999999999999999887666632 1 2234467888877544333
Q ss_pred cCC-eEEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeE
Q 000685 333 KDS-HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVI 394 (1352)
Q Consensus 333 ~Dg-~IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~I 394 (1352)
.|. .||.=...... ....+.. .......|..+.|+|- ..+|.+|+..|.-
T Consensus 353 G~~v~iw~d~~~~s~---------~~~~pYm--~H~~~~~V~~l~FcP~-EDvLGIGH~~G~t 403 (545)
T KOG1272|consen 353 GDHVQIWKDALKGSG---------HGETPYM--NHRCGGPVEDLRFCPY-EDVLGIGHAGGIT 403 (545)
T ss_pred CCeeeeehhhhcCCC---------CCCcchh--hhccCcccccceeccH-HHeeeccccCCce
Confidence 333 58843211000 0001111 1111227899999994 6678888888763
No 199
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.30 E-value=2.6e-11 Score=142.11 Aligned_cols=250 Identities=15% Similarity=0.132 Sum_probs=171.2
Q ss_pred cCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeC------CccccccccccCCCCeEEEEEeeccccCCCCEEEEEECC
Q 000685 118 NVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVT------MRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSD 190 (1352)
Q Consensus 118 ~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t------~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~D 190 (1352)
.|...|+.+.|++... .|++++.|+.+ +|+++. ...+.+.++..|.++|.|+++ ++++.++++|+.|
T Consensus 292 s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v-----~~n~~~~ysgg~D 365 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVV-----PSNGEHCYSGGID 365 (577)
T ss_pred cchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEe-----cCCceEEEeeccC
Confidence 3477899999999887 99999999999 577722 223456677899999999999 7789999999999
Q ss_pred CcEEEEECCCC----------eEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceeccccccc
Q 000685 191 GVIRVLSMISW----------KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLK 260 (1352)
Q Consensus 191 GtIrIWDl~t~----------~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~ 260 (1352)
|+|+.|++... .....+. ||.+.|+.+. ++.....|++||.||+||.|+...... .. +.-.
T Consensus 366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~-Ghtdavw~l~---~s~~~~~Llscs~DgTvr~w~~~~~~~-~~----f~~~ 436 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDPDDSYDPSVLSGTLL-GHTDAVWLLA---LSSTKDRLLSCSSDGTVRLWEPTEESP-CT----FGEP 436 (577)
T ss_pred ceeeeeccCCCCCcccccCcchhcccee-ccccceeeee---ecccccceeeecCCceEEeeccCCcCc-cc----cCCc
Confidence 99999966421 2223444 9999999886 788888999999999999999876553 11 1112
Q ss_pred ccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCc-ccccCCceeEEEeCCCCCEE-EEecCCe--
Q 000685 261 AHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPK-LACHSVASWCHPRAPNLDIL-TCVKDSH-- 336 (1352)
Q Consensus 261 gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~-l~~hs~~V~svafspdg~lL-S~s~Dg~-- 336 (1352)
.-.+...++.+-.. +-.++++...-+.--++++..+..++.+..... .......+..+.++|.+.+. ++.+|+.
T Consensus 437 ~e~g~Plsvd~~ss--~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir 514 (577)
T KOG0642|consen 437 KEHGYPLSVDRTSS--RPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIR 514 (577)
T ss_pred cccCCcceEeeccc--hhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCcee
Confidence 22233455665431 112333333444444555555555554432110 11112345577888888765 6667775
Q ss_pred EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCC
Q 000685 337 IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1352)
Q Consensus 337 IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~~ 402 (1352)
++|..++ ..+.....|.. .++++++.| ++-+|.+|+.||.+ ++|....
T Consensus 515 ~~dn~~~---------------~~l~s~~a~~~-svtslai~~-ng~~l~s~s~d~sv-~l~kld~ 562 (577)
T KOG0642|consen 515 FFDNKTG---------------KILHSMVAHKD-SVTSLAIDP-NGPYLMSGSHDGSV-RLWKLDV 562 (577)
T ss_pred ccccccc---------------ccchheeeccc-eecceeecC-CCceEEeecCCcee-ehhhccc
Confidence 5676654 23445556666 899999999 56669999999997 7998653
No 200
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.28 E-value=6.4e-11 Score=138.76 Aligned_cols=206 Identities=14% Similarity=0.122 Sum_probs=143.1
Q ss_pred cCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCC-------eEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEe
Q 000685 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-------KLVRRYTGGHKGSISCLMTFMASSGEALLVSGG 234 (1352)
Q Consensus 162 ~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~-------~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS 234 (1352)
.....|+.+.|.|. |...|+++++||.|++|.+..+ ..-..+. +|...|+++.| .+--.+.|++++
T Consensus 625 ~Ngt~vtDl~WdPF----D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt-~h~eKI~slRf--HPLAadvLa~as 697 (1012)
T KOG1445|consen 625 FNGTLVTDLHWDPF----DDERLAVATDDGQINLWRLTANGLPENEMTPEKILT-IHGEKITSLRF--HPLAADVLAVAS 697 (1012)
T ss_pred ccCceeeecccCCC----ChHHeeecccCceEEEEEeccCCCCcccCCcceeee-cccceEEEEEe--cchhhhHhhhhh
Confidence 34668999999653 6678999999999999999753 3334454 89999999984 344567999999
Q ss_pred CCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeE-EEEecCCCccccc
Q 000685 235 SDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKE-LRRIKPVPKLACH 313 (1352)
Q Consensus 235 ~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~-l~~~~~~~~l~~h 313 (1352)
.|-+|++||+.+++... .+.+|.+.|..++|+| +|+.+++.+.||+|++|+-+++.. ++. .....+.
T Consensus 698 yd~Ti~lWDl~~~~~~~------~l~gHtdqIf~~AWSp---dGr~~AtVcKDg~~rVy~Prs~e~pv~E---g~gpvgt 765 (1012)
T KOG1445|consen 698 YDSTIELWDLANAKLYS------RLVGHTDQIFGIAWSP---DGRRIATVCKDGTLRVYEPRSREQPVYE---GKGPVGT 765 (1012)
T ss_pred ccceeeeeehhhhhhhh------eeccCcCceeEEEECC---CCcceeeeecCceEEEeCCCCCCCcccc---CCCCccC
Confidence 99999999999887533 4799999999999999 899999999999999999887653 221 1111121
Q ss_pred CCceeEEEeCCCCCEE-EEecCCe------EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEE
Q 000685 314 SVASWCHPRAPNLDIL-TCVKDSH------IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVA 386 (1352)
Q Consensus 314 s~~V~svafspdg~lL-S~s~Dg~------IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLa 386 (1352)
.--.+.|.-+|+++ ..|.|.. +||..+....++.....+... .+.--.+.++.+.++.
T Consensus 766 --RgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvap-------------s~LvP~YD~Ds~~lfl 830 (1012)
T KOG1445|consen 766 --RGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAP-------------SPLVPHYDYDSNVLFL 830 (1012)
T ss_pred --cceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccC-------------ccccccccCCCceEEE
Confidence 11256777788866 5666652 677765432222111111111 1111123344567889
Q ss_pred EEECCCeEEEEecCCC
Q 000685 387 TGTNVGVIISEFDPRS 402 (1352)
Q Consensus 387 tGs~DG~IlriWd~~~ 402 (1352)
+|-.|..| .+|.+..
T Consensus 831 tGKGD~~v-~~yEv~~ 845 (1012)
T KOG1445|consen 831 TGKGDRFV-NMYEVIY 845 (1012)
T ss_pred ecCCCceE-EEEEecC
Confidence 99999987 5777554
No 201
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.28 E-value=6.1e-11 Score=133.60 Aligned_cols=216 Identities=12% Similarity=0.169 Sum_probs=153.6
Q ss_pred EecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccC
Q 000685 6 AFRPTNDKIVKIQLHPTH-PWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1352)
Q Consensus 6 ~L~gHs~~V~~lafSPdg-~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~ 84 (1352)
.+.||+..|..++|+|-. ..|||||.|.+|.||++-.+-+...+.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt---------------------------------- 121 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT---------------------------------- 121 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc----------------------------------
Confidence 468999999999999954 589999999999999986533322221
Q ss_pred CceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccccccC
Q 000685 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELD 163 (1352)
Q Consensus 85 g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~h 163 (1352)
.+ ...+.+| ...|-.+.|+|...++|++++.|..+ +||..+++. +.... |
T Consensus 122 ep-------------------------vv~L~gH-~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgea--li~l~-h 172 (472)
T KOG0303|consen 122 EP-------------------------VVELYGH-QRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEA--LITLD-H 172 (472)
T ss_pred cc-------------------------eEEEeec-ceeEEEEeecccchhhHhhccCCceEEEEeccCCce--eeecC-C
Confidence 01 0123333 66688899999887788877777776 789999864 32333 9
Q ss_pred CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEe---CCCcEE
Q 000685 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGG---SDGLLI 240 (1352)
Q Consensus 164 ~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS---~DGtVr 240 (1352)
.+-|.++.| +.+|.++++.+.|..|||||.++++.+..-. +|.+.-..-+ .|-.++.++-||- .++++-
T Consensus 173 pd~i~S~sf-----n~dGs~l~TtckDKkvRv~dpr~~~~v~e~~-~heG~k~~Ra--ifl~~g~i~tTGfsr~seRq~a 244 (472)
T KOG0303|consen 173 PDMVYSMSF-----NRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV-AHEGAKPARA--IFLASGKIFTTGFSRMSERQIA 244 (472)
T ss_pred CCeEEEEEe-----ccCCceeeeecccceeEEEcCCCCcEeeecc-cccCCCccee--EEeccCceeeecccccccccee
Confidence 999999999 7899999999999999999999999988775 7876433322 1455677555553 478899
Q ss_pred EEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEE-EEECCCcEEEEECCCCe
Q 000685 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLI-TIGADKTLAIWDTVSFK 299 (1352)
Q Consensus 241 VWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~La-Sgs~DgtV~IWDl~tg~ 299 (1352)
+||..+-+.-. ...++. .+.+|.-=-|.+ |..++. +|-.|+.||-|.+.+-.
T Consensus 245 Lwdp~nl~eP~---~~~elD-tSnGvl~PFyD~---dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 245 LWDPNNLEEPI---ALQELD-TSNGVLLPFYDP---DTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ccCcccccCcc---eeEEec-cCCceEEeeecC---CCCEEEEEecCCcceEEEEecCCC
Confidence 99987643211 112233 345565555666 555554 55579999999987654
No 202
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.27 E-value=1.4e-10 Score=143.08 Aligned_cols=248 Identities=15% Similarity=0.207 Sum_probs=159.7
Q ss_pred CCEEEEEEcCC--CCEEEEEeCCCcEEEEE-CCCC----cEEEEEec------cCccceEEec---cccceeEecccccC
Q 000685 12 DKIVKIQLHPT--HPWLVTADASDHVSVWN-WEHR----QVIYELKA------GGVDQRRLVG---AKLEKLAEGELEHK 75 (1352)
Q Consensus 12 ~~V~~lafSPd--g~~LaTgs~DG~VrVWD-l~tg----~~i~t~~~------~~~~~i~~vs---~dg~~Lasgs~d~~ 75 (1352)
.+|+.+.+-.. ..+|++|+.||.||||+ +.++ +.+..+.. +..+.-.+++ ..|..+++|
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG----- 1184 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG----- 1184 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC-----
Confidence 46888887543 44899999999999997 3332 22222211 0011111111 223333332
Q ss_pred CCccccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEE-EeeCCcc
Q 000685 76 GKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRG 154 (1352)
Q Consensus 76 g~~l~~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~w-Dl~t~~~ 154 (1352)
.-..|||||.....+.+.. ..+ ....++++.-+-....++++|..||.+++ |.+....
T Consensus 1185 -----------------d~r~IRIWDa~~E~~~~di---P~~-s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ 1243 (1387)
T KOG1517|consen 1185 -----------------DVRSIRIWDAHKEQVVADI---PYG-SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP 1243 (1387)
T ss_pred -----------------CeeEEEEEecccceeEeec---ccC-CCccceeecccccCCceEEEeecCCceEEeecccCCc
Confidence 1357999999887666422 122 25567777654433349999999999977 7765432
Q ss_pred c-cccccccCCCC--eEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEE--EEEecCCC--C-CeeEEEEeeeCCC
Q 000685 155 R-DIPKQELDNKS--LVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLV--RRYTGGHK--G-SISCLMTFMASSG 226 (1352)
Q Consensus 155 ~-~i~~~~~h~~~--V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i--~~l~~gH~--~-~V~slawf~~s~d 226 (1352)
. .+...+.|++. |..+.+.+ .+.+ .|++|+.||.|++||++..... ..+. .|. + .++++. .++.
T Consensus 1244 ds~v~~~R~h~~~~~Iv~~slq~---~G~~-elvSgs~~G~I~~~DlR~~~~e~~~~iv-~~~~yGs~lTal~---VH~h 1315 (1387)
T KOG1517|consen 1244 DSLVCVYREHNDVEPIVHLSLQR---QGLG-ELVSGSQDGDIQLLDLRMSSKETFLTIV-AHWEYGSALTALT---VHEH 1315 (1387)
T ss_pred cccceeecccCCcccceeEEeec---CCCc-ceeeeccCCeEEEEecccCcccccceee-eccccCccceeee---eccC
Confidence 2 34456777776 99999944 1223 6999999999999999874221 1222 333 3 478885 7899
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCccceecccccc-cccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCC
Q 000685 227 EALLVSGGSDGLLILWSADHGQDSRELVPKLSL-KAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSF 298 (1352)
Q Consensus 227 g~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l-~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg 298 (1352)
..++++|+. +.|+||++... .+..+...-.+ ....+.+.|++||| -.-+++.|+.|.+|.||.....
T Consensus 1316 apiiAsGs~-q~ikIy~~~G~-~l~~~k~n~~F~~q~~gs~scL~FHP---~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1316 APIIASGSA-QLIKIYSLSGE-QLNIIKYNPGFMGQRIGSVSCLAFHP---HRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred CCeeeecCc-ceEEEEecChh-hhcccccCcccccCcCCCcceeeecc---hhHhhhhccCCceEEEeecCCc
Confidence 999999998 99999999743 33332222112 22345589999999 5678899999999999987654
No 203
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=6.5e-10 Score=127.18 Aligned_cols=192 Identities=17% Similarity=0.085 Sum_probs=142.5
Q ss_pred eeeeecCCCCeEEEEEecCcEEEE-EeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCe
Q 000685 124 ASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK 202 (1352)
Q Consensus 124 ~slafspdg~~lLasgs~D~~I~w-Dl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~ 202 (1352)
.+++|+.+|. .+++|+.|+.+|+ ++.+.. .+.....|...|.++.| +|||++|++-+.| ..+||+.+++.
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~--t~l~e~~~~~eV~DL~F-----S~dgk~lasig~d-~~~VW~~~~g~ 218 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSML--TILEEIAHHAEVKDLDF-----SPDGKFLASIGAD-SARVWSVNTGA 218 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcch--hhhhhHhhcCcccccee-----CCCCcEEEEecCC-ceEEEEeccCc
Confidence 7899999997 9999999999955 755543 34456788999999999 8899999999999 89999999997
Q ss_pred EEEEEecCCCCCeeEEEEeeeCCCC-----CEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCC
Q 000685 203 LVRRYTGGHKGSISCLMTFMASSGE-----ALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGG 277 (1352)
Q Consensus 203 ~i~~l~~gH~~~V~slawf~~s~dg-----~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~d 277 (1352)
.+.........+....+ .|+.++ .++++-..-+.|+.||+...+.. .+.+......-...|.+++.+. +
T Consensus 219 ~~a~~t~~~k~~~~~~c--RF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~~~~~~~~siSsl~VS~---d 292 (398)
T KOG0771|consen 219 ALARKTPFSKDEMFSSC--RFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLRKKIKRFKSISSLAVSD---D 292 (398)
T ss_pred hhhhcCCcccchhhhhc--eecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchhhhhhccCcceeEEEcC---C
Confidence 77766522333443333 256555 33444455677888887654432 1111122222335699999998 8
Q ss_pred CCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEE-EEecCC
Q 000685 278 SPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDS 335 (1352)
Q Consensus 278 g~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lL-S~s~Dg 335 (1352)
|++++.|+.||.|-|++..+.++++.+ -+.|...|+.+.|+|+.+.+ +.+.|.
T Consensus 293 Gkf~AlGT~dGsVai~~~~~lq~~~~v-----k~aH~~~VT~ltF~Pdsr~~~svSs~~ 346 (398)
T KOG0771|consen 293 GKFLALGTMDGSVAIYDAKSLQRLQYV-----KEAHLGFVTGLTFSPDSRYLASVSSDN 346 (398)
T ss_pred CcEEEEeccCCcEEEEEeceeeeeEee-----hhhheeeeeeEEEcCCcCcccccccCC
Confidence 999999999999999999988887765 36899999999999997755 455554
No 204
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=3.4e-10 Score=138.42 Aligned_cols=220 Identities=11% Similarity=0.018 Sum_probs=143.6
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCcccc
Q 000685 5 KAFRPTNDKIVKIQLHPTHPWLVTADAS---DHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEA 81 (1352)
Q Consensus 5 ~~L~gHs~~V~~lafSPdg~~LaTgs~D---G~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~ 81 (1352)
+.+..|...|.+.+|||||++|+.++.+ ..|.+||+.+++......
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~------------------------------- 245 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS------------------------------- 245 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-------------------------------
Confidence 4556677788888888888888877643 357788876654211100
Q ss_pred ccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE---EEEeeCCcccccc
Q 000685 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI---FLDLVTMRGRDIP 158 (1352)
Q Consensus 82 l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I---~wDl~t~~~~~i~ 158 (1352)
. ......++|+|||+.++++.+.++.. .||..++....
T Consensus 246 ---------------------------------~----~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~-- 286 (429)
T PRK01742 246 ---------------------------------F----RGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQ-- 286 (429)
T ss_pred ---------------------------------C----CCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEe--
Confidence 0 01123468999998454445556643 33666554333
Q ss_pred ccccCCCCeEEEEEeeccccCCCCEEEEEE-CCCcEEEEECCCC-eEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCC
Q 000685 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGS-SDGVIRVLSMISW-KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSD 236 (1352)
Q Consensus 159 ~~~~h~~~V~~vaf~P~s~Spdg~~LasGs-~DGtIrIWDl~t~-~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~D 236 (1352)
...+...+.+..| +|||+.|+.++ .+|...||++... .....+ ++.. .+.. ++|+|+.|+.++.+
T Consensus 287 -lt~~~~~~~~~~w-----SpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l--~~~~--~~~~---~SpDG~~ia~~~~~ 353 (429)
T PRK01742 287 -LTSGAGNNTEPSW-----SPDGQSILFTSDRSGSPQVYRMSASGGGASLV--GGRG--YSAQ---ISADGKTLVMINGD 353 (429)
T ss_pred -eccCCCCcCCEEE-----CCCCCEEEEEECCCCCceEEEEECCCCCeEEe--cCCC--CCcc---CCCCCCEEEEEcCC
Confidence 3345556778899 78999877665 5788888887532 222222 3433 3454 69999999888876
Q ss_pred CcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECC--CCeEEEEecCCCcccccC
Q 000685 237 GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV--SFKELRRIKPVPKLACHS 314 (1352)
Q Consensus 237 GtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~--tg~~l~~~~~~~~l~~hs 314 (1352)
+ +.+||+.+++.... ...+ ...++.|+| ++++|+.++.++.+.+|++. +|+..++ +..|.
T Consensus 354 ~-i~~~Dl~~g~~~~l------t~~~--~~~~~~~sP---dG~~i~~~s~~g~~~~l~~~~~~G~~~~~------l~~~~ 415 (429)
T PRK01742 354 N-VVKQDLTSGSTEVL------SSTF--LDESPSISP---NGIMIIYSSTQGLGKVLQLVSADGRFKAR------LPGSD 415 (429)
T ss_pred C-EEEEECCCCCeEEe------cCCC--CCCCceECC---CCCEEEEEEcCCCceEEEEEECCCCceEE------ccCCC
Confidence 5 55599988764321 0111 134678999 89999999999998888753 5776666 46777
Q ss_pred CceeEEEeCCC
Q 000685 315 VASWCHPRAPN 325 (1352)
Q Consensus 315 ~~V~svafspd 325 (1352)
..++..+|+|-
T Consensus 416 g~~~~p~wsp~ 426 (429)
T PRK01742 416 GQVKFPAWSPY 426 (429)
T ss_pred CCCCCcccCCC
Confidence 77888899885
No 205
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=8.1e-11 Score=134.46 Aligned_cols=197 Identities=21% Similarity=0.218 Sum_probs=140.0
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCCceEEEEEcC
Q 000685 15 VKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYD 94 (1352)
Q Consensus 15 ~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~sVaF~D 94 (1352)
.+++|+.+|..|++|+.||++|||++.+...+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~------------------------------------------- 184 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIA------------------------------------------- 184 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHh-------------------------------------------
Confidence 7888888888999999999999998765433332221
Q ss_pred CeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEEEeeCCccccccccccCCCCeEEEEEee
Q 000685 95 DDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLS 174 (1352)
Q Consensus 95 g~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl~t~~~~~i~~~~~h~~~V~~vaf~P 174 (1352)
|...|.++.|+|||+ +|++-+.|..-+|+.+++.................+.|
T Consensus 185 ------------------------~~~eV~DL~FS~dgk-~lasig~d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF-- 237 (398)
T KOG0771|consen 185 ------------------------HHAEVKDLDFSPDGK-FLASIGADSARVWSVNTGAALARKTPFSKDEMFSSCRF-- 237 (398)
T ss_pred ------------------------hcCccccceeCCCCc-EEEEecCCceEEEEeccCchhhhcCCcccchhhhhcee--
Confidence 145688899999998 88888888777999998854332222223334555667
Q ss_pred ccccCCC---CEEE--EEECCCcEEEEECCCCeE-----EEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeC
Q 000685 175 RSAVGDV---PLVA--FGSSDGVIRVLSMISWKL-----VRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSA 244 (1352)
Q Consensus 175 ~s~Spdg---~~La--sGs~DGtIrIWDl~t~~~-----i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl 244 (1352)
+.++ .+.+ .-..-+.|+.||+..++. .++.. .....|++++ .+.+|++++.|+.||.|-|++.
T Consensus 238 ---~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~---VS~dGkf~AlGT~dGsVai~~~ 310 (398)
T KOG0771|consen 238 ---SVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLA---VSDDGKFLALGTMDGSVAIYDA 310 (398)
T ss_pred ---cccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEE---EcCCCcEEEEeccCCcEEEEEe
Confidence 3344 2222 223456677777654322 11212 2335788887 8999999999999999999999
Q ss_pred CCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECC
Q 000685 245 DHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV 296 (1352)
Q Consensus 245 ~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~ 296 (1352)
.+-+.+.- .-+.|..-|+.+.|+| +.+++++.+.|.+..|..+.
T Consensus 311 ~~lq~~~~-----vk~aH~~~VT~ltF~P---dsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 311 KSLQRLQY-----VKEAHLGFVTGLTFSP---DSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred ceeeeeEe-----ehhhheeeeeeEEEcC---CcCcccccccCCceeEEEEe
Confidence 87765442 3478999999999999 88999999999998888765
No 206
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.23 E-value=1.2e-09 Score=124.01 Aligned_cols=163 Identities=18% Similarity=0.194 Sum_probs=131.8
Q ss_pred CCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCC-------ccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCC
Q 000685 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTM-------RGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDG 191 (1352)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~-------~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DG 191 (1352)
..++.++.|.++....+++|+.|.-+ +|-+... +......+..|...|+++.| +|+|+++++|+++|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf-----~p~gelLASg~D~g 87 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRF-----SPDGELLASGGDGG 87 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEE-----cCCcCeeeecCCCc
Confidence 45688899998876688988888777 4533221 22334456788999999999 78999999999999
Q ss_pred cEEEEECC--------C--------CeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecc
Q 000685 192 VIRVLSMI--------S--------WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVP 255 (1352)
Q Consensus 192 tIrIWDl~--------t--------~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~ 255 (1352)
.|.+|-.. + +...+.+. +|...|..++| ++++.++++++.|+.+++||+..|+....
T Consensus 88 ~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr-~h~~diydL~W---s~d~~~l~s~s~dns~~l~Dv~~G~l~~~--- 160 (434)
T KOG1009|consen 88 EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLR-GHRDDIYDLAW---SPDSNFLVSGSVDNSVRLWDVHAGQLLAI--- 160 (434)
T ss_pred eEEEEEecCcCCccccchhhhCccceEEEEEec-ccccchhhhhc---cCCCceeeeeeccceEEEEEeccceeEee---
Confidence 99999865 2 33344444 89999999995 78999999999999999999999987654
Q ss_pred cccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeE
Q 000685 256 KLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKE 300 (1352)
Q Consensus 256 ~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~ 300 (1352)
+.+|...|..++|.| -+.++++-+.|+..+.+++...+.
T Consensus 161 ---~~dh~~yvqgvawDp---l~qyv~s~s~dr~~~~~~~~~~~~ 199 (434)
T KOG1009|consen 161 ---LDDHEHYVQGVAWDP---LNQYVASKSSDRHPEGFSAKLKQV 199 (434)
T ss_pred ---ccccccccceeecch---hhhhhhhhccCcccceeeeeeeee
Confidence 688999999999999 688999999999888887765443
No 207
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.23 E-value=1.5e-09 Score=122.12 Aligned_cols=243 Identities=14% Similarity=0.163 Sum_probs=163.7
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec--cccceeEecccccCCCccccccCCc
Q 000685 9 PTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAMRGGS 86 (1352)
Q Consensus 9 gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~~l~~g~ 86 (1352)
+....+..+.|+.+...|..|+.||. ++++.+.-.. +.....+++..+. -....++..+.+
T Consensus 3 ~~~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k---~~~~~~~~~~IvEmLFSSSLvaiV~~~------------- 65 (391)
T KOG2110|consen 3 GKKPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK---CFSKDTEGVSIVEMLFSSSLVAIVSIK------------- 65 (391)
T ss_pred CCCcceeeeeeccceeEEEccCCCce-eEEecCchHH---hhcccCCCeEEEEeecccceeEEEecC-------------
Confidence 44567888889999888988988885 6887664332 1111122333332 111122222111
Q ss_pred eEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEEEeeCCccccc-cccccCCC
Q 000685 87 VKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDI-PKQELDNK 165 (1352)
Q Consensus 87 V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl~t~~~~~i-~~~~~h~~ 165 (1352)
....+++.++..+..+- . -.....|.++.++.+ .|+++-.+.+.++|+++++.... .....+..
T Consensus 66 ------qpr~Lkv~~~Kk~~~IC----e--~~fpt~IL~VrmNr~---RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~ 130 (391)
T KOG2110|consen 66 ------QPRKLKVVHFKKKTTIC----E--IFFPTSILAVRMNRK---RLVVCLEESIYIYDIKDMKLLHTIETTPPNPK 130 (391)
T ss_pred ------CCceEEEEEcccCceEE----E--EecCCceEEEEEccc---eEEEEEcccEEEEecccceeehhhhccCCCcc
Confidence 12456666665543320 1 111456788888764 46667777777889998865321 11123344
Q ss_pred CeEEEEEeeccccCCCCEEEEEE--CCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCc-EEEE
Q 000685 166 SLVCMEFLSRSAVGDVPLVAFGS--SDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL-LILW 242 (1352)
Q Consensus 166 ~V~~vaf~P~s~Spdg~~LasGs--~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGt-VrVW 242 (1352)
.+.++.+ +..+.+++.-+ ..|.|.|||..+-+.+..+. .|.+.+.|++ |+++|.+|+|+|..|+ |||+
T Consensus 131 gl~AlS~-----n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~-aH~~~lAala---fs~~G~llATASeKGTVIRVf 201 (391)
T KOG2110|consen 131 GLCALSP-----NNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN-AHKGPLAALA---FSPDGTLLATASEKGTVIRVF 201 (391)
T ss_pred ceEeecc-----CCCCceEEecCCCCCceEEEEEcccceeeeEEE-ecCCceeEEE---ECCCCCEEEEeccCceEEEEE
Confidence 4555555 56677887643 56899999999999999887 9999999998 8999999999999998 5899
Q ss_pred eCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCe
Q 000685 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK 299 (1352)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~ 299 (1352)
.+.+|+.+.+|..-. -...|.+++|+| ++.+|.+.|..++|+||.+..-.
T Consensus 202 ~v~~G~kl~eFRRG~----~~~~IySL~Fs~---ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 202 SVPEGQKLYEFRRGT----YPVSIYSLSFSP---DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EcCCccEeeeeeCCc----eeeEEEEEEECC---CCCeEEEecCCCeEEEEEecccc
Confidence 999999877652111 134589999999 88999999999999999987543
No 208
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.23 E-value=5.6e-10 Score=130.06 Aligned_cols=212 Identities=16% Similarity=0.197 Sum_probs=138.6
Q ss_pred EEEE-cCCeEEEEEcCCccccccccccccccCCCCeeeeee-----cCCCCeEEEEEecCcEEEE-EeeCCccccccccc
Q 000685 89 QVNF-YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPP-----STKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQE 161 (1352)
Q Consensus 89 sVaF-~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slaf-----spdg~~lLasgs~D~~I~w-Dl~t~~~~~i~~~~ 161 (1352)
-++| ....+.+|+.+.+..+...+...... ...-.|=.| .+++- -+.+|-.-+.+.| |....+...+....
T Consensus 137 ~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~-gt~P~cHdfn~~~a~~~g~-dllIGf~tGqvq~idp~~~~~sklfne~ 214 (636)
T KOG2394|consen 137 RLCFNVGRELYVYSYRGAADLSKPIDKREYK-GTSPTCHDFNSFTATPKGL-DLLIGFTTGQVQLIDPINFEVSKLFNEE 214 (636)
T ss_pred EEEEecCCeEEEEEccCcchhccchhhhccc-CCCCceecccccccCCCCc-ceEEeeccCceEEecchhhHHHHhhhhc
Confidence 3555 45678889988543332221111111 011112222 34454 4555555555544 65543322222222
Q ss_pred --cCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCC--------------CeEEEEEe-cC------------CC
Q 000685 162 --LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS--------------WKLVRRYT-GG------------HK 212 (1352)
Q Consensus 162 --~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t--------------~~~i~~l~-~g------------H~ 212 (1352)
.....|+|+.|.|. +...++..-.+|.+.+||... +....... .. -.
T Consensus 215 r~i~ktsvT~ikWvpg----~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~ 290 (636)
T KOG2394|consen 215 RLINKSSVTCIKWVPG----SDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGE 290 (636)
T ss_pred ccccccceEEEEEEeC----CCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecc
Confidence 23578999999874 455677788899999997631 11111110 01 12
Q ss_pred CCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEE
Q 000685 213 GSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAI 292 (1352)
Q Consensus 213 ~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~I 292 (1352)
+.|... .|++||++|++.|.||.+||||+.+.+.+.. ++.--++..|++|+| |++||++|+.|-.|.|
T Consensus 291 g~in~f---~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~------mkSYFGGLLCvcWSP---DGKyIvtGGEDDLVtV 358 (636)
T KOG2394|consen 291 GSINEF---AFSPDGKYLATVSQDGFLRIFDFDTQELLGV------MKSYFGGLLCVCWSP---DGKYIVTGGEDDLVTV 358 (636)
T ss_pred ccccce---eEcCCCceEEEEecCceEEEeeccHHHHHHH------HHhhccceEEEEEcC---CccEEEecCCcceEEE
Confidence 234444 4889999999999999999999998665443 344557899999999 8999999999999999
Q ss_pred EECCCCeEEEEecCCCcccccCCceeEEEeCC
Q 000685 293 WDTVSFKELRRIKPVPKLACHSVASWCHPRAP 324 (1352)
Q Consensus 293 WDl~tg~~l~~~~~~~~l~~hs~~V~svafsp 324 (1352)
|.+..++.+.+ -.+|...|+.|+|.|
T Consensus 359 wSf~erRVVAR------GqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 359 WSFEERRVVAR------GQGHKSWVSVVAFDP 384 (636)
T ss_pred EEeccceEEEe------ccccccceeeEeecc
Confidence 99999998877 689999999999998
No 209
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=3.2e-10 Score=126.88 Aligned_cols=248 Identities=11% Similarity=0.054 Sum_probs=168.9
Q ss_pred CCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCcc----ccccc-cccCCCCeEEEEEeeccccCCCCEEEEEECCCc
Q 000685 119 VTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRG----RDIPK-QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGV 192 (1352)
Q Consensus 119 ~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~----~~i~~-~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGt 192 (1352)
|.++|+++.|+.+++ ||++|++|..+ +|++...-. +.+.. ...|...|.|++| .....++.+|..+++
T Consensus 55 H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F-----~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 55 HTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEF-----DLENRFLYSGERWGT 128 (609)
T ss_pred hccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEE-----ccCCeeEecCCCcce
Confidence 488999999999986 99999999888 666543211 12222 2445689999999 566789999999999
Q ss_pred EEEEECCCCeEEEEEecCCC---CCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEE
Q 000685 193 IRVLSMISWKLVRRYTGGHK---GSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAV 269 (1352)
Q Consensus 193 IrIWDl~t~~~i~~l~~gH~---~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~sl 269 (1352)
|...|+++.+.+..+. |. +.|+.+. .+|..+.|++.+.++.|.+||.+....-..+ +.+........++
T Consensus 129 VI~HDiEt~qsi~V~~--~~~~~~~VY~m~---~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~---~~~AN~~~~F~t~ 200 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVAN--ENNNRGDVYHMD---QHPTDNTLIVVTRAKLVSFIDNRDRQNPISL---VLPANSGKNFYTA 200 (609)
T ss_pred eEeeecccceeeeeec--ccCcccceeecc---cCCCCceEEEEecCceEEEEeccCCCCCCce---eeecCCCccceee
Confidence 9999999998887774 54 4899887 7888999999999999999999876522221 1123334457889
Q ss_pred EeeccCCCCCEEEEEECCCcEEEEECCCCe-EEEEecCCCcccccCCceeEEEeCCCCCEEEEecCCe---EEeccCCcc
Q 000685 270 ELSRVMGGSPQLITIGADKTLAIWDTVSFK-ELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSH---IWAIEHPTY 345 (1352)
Q Consensus 270 afsp~~~dg~~LaSgs~DgtV~IWDl~tg~-~l~~~~~~~~l~~hs~~V~svafspdg~lLS~s~Dg~---IWDi~t~~~ 345 (1352)
.|+|. ...+|++.+..+-+-+||.+... .+.+......+......-.++.|+|+|..+-+-.-+. +||+.....
T Consensus 201 ~F~P~--~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~ 278 (609)
T KOG4227|consen 201 EFHPE--TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRC 278 (609)
T ss_pred eecCC--CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccc
Confidence 99994 67899999999999999987543 1111111111221111113778999987553333332 677764311
Q ss_pred cccccCccccCCCCCCeEEecC-------CcccEEEEEEecCCCcEEEEEECCCeEEEEecCC
Q 000685 346 SALTRPLCELSSLVPPQVLAHH-------KKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1352)
Q Consensus 346 ~~~~~~l~~~~~~~~~~~l~~h-------~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~ 401 (1352)
.++..+ ....+.+++|-. .+-+++|+++=.| ++|.+.
T Consensus 279 ----------------~V~k~D~N~~GY~N~~T~KS~~F~~--D~~v~tGSD~~~i-~~WklP 322 (609)
T KOG4227|consen 279 ----------------FVLKSDHNPNGYCNIKTIKSMTFID--DYTVATGSDHWGI-HIWKLP 322 (609)
T ss_pred ----------------eeEeccCCCCcceeeeeeeeeeeec--ceeeeccCcccce-EEEecC
Confidence 111111 112566777765 4559999999886 799754
No 210
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.21 E-value=3.5e-09 Score=126.43 Aligned_cols=298 Identities=13% Similarity=0.086 Sum_probs=177.1
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCcccccc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~ 83 (1352)
+.++..+.+.-..+.|+|||+++++++.||.|.++|+.+++.+.+++.+....-..+++||++++.+.
T Consensus 29 ~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n------------ 96 (369)
T PF02239_consen 29 VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVAN------------ 96 (369)
T ss_dssp EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEE------------
T ss_pred EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEe------------
Confidence 45565544433457899999999999999999999999999999999877666667779999888764
Q ss_pred CCceEEEEEcCCeEEEEEcCCcccccccccc--ccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCcccccccc
Q 000685 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPT--AVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQ 160 (1352)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~--~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~ 160 (1352)
+.++.+.++|..+.+.+...... ........+.++..++.++.+++.--+.+.+ .+|+...+.... ..
T Consensus 97 --------~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~-~~ 167 (369)
T PF02239_consen 97 --------YEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV-TT 167 (369)
T ss_dssp --------EETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE-EE
T ss_pred --------cCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce-ee
Confidence 24789999999988766421111 0111245678888888887555555554555 448766533222 12
Q ss_pred ccCCCCeEEEEEeeccccCCCCEEEEE-ECCCcEEEEECCCCeEEEEEecC---CCCCeeEEE-------EeeeCCCCCE
Q 000685 161 ELDNKSLVCMEFLSRSAVGDVPLVAFG-SSDGVIRVLSMISWKLVRRYTGG---HKGSISCLM-------TFMASSGEAL 229 (1352)
Q Consensus 161 ~~h~~~V~~vaf~P~s~Spdg~~LasG-s~DGtIrIWDl~t~~~i~~l~~g---H~~~V~sla-------wf~~s~dg~~ 229 (1352)
...........| +|++++++.+ ..+..|-++|.++++.+..+..+ |...+..+- |. ....+..
T Consensus 168 i~~g~~~~D~~~-----dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~-~~~~~~~ 241 (369)
T PF02239_consen 168 IKVGRFPHDGGF-----DPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWA-TSGLGYF 241 (369)
T ss_dssp EE--TTEEEEEE------TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEE-EEBSSSS
T ss_pred eccccccccccc-----CcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEe-eccccce
Confidence 223556778888 7899987775 45678999999999888766422 444444331 22 1112222
Q ss_pred EEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEE----ECCCcEEEEECCCCeEEEEec
Q 000685 230 LVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITI----GADKTLAIWDTVSFKELRRIK 305 (1352)
Q Consensus 230 LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSg----s~DgtV~IWDl~tg~~l~~~~ 305 (1352)
.++.-....+.+||..+.+.+++ +.....+ .-+..|| +++++... ...++|.++|..+.+.+.++.
T Consensus 242 ~~~~ig~~~v~v~d~~~wkvv~~------I~~~G~g-lFi~thP---~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~ 311 (369)
T PF02239_consen 242 AIPLIGTDPVSVHDDYAWKVVKT------IPTQGGG-LFIKTHP---DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTIT 311 (369)
T ss_dssp EEEEEE--TTT-STTTBTSEEEE------EE-SSSS---EE--T---T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HH
T ss_pred ecccccCCccccchhhcCeEEEE------EECCCCc-ceeecCC---CCccEEeeccCCCCCceEEEEECcCcceeEEEe
Confidence 22222334555677777766554 4544555 6778899 78888887 456899999999988777642
Q ss_pred CCCcccccCCceeEEEeCCCCCEE--EEecCC-e--EEeccCC
Q 000685 306 PVPKLACHSVASWCHPRAPNLDIL--TCVKDS-H--IWAIEHP 343 (1352)
Q Consensus 306 ~~~~l~~hs~~V~svafspdg~lL--S~s~Dg-~--IWDi~t~ 343 (1352)
. +-...+..+.|+++|+.+ |...++ . |||..+.
T Consensus 312 ~-----~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 312 P-----GPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp H-----HHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred c-----cCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCc
Confidence 1 112236789999999944 544333 4 6887764
No 211
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.21 E-value=2.1e-09 Score=118.86 Aligned_cols=323 Identities=14% Similarity=0.130 Sum_probs=189.4
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCCceEEEEEcCC
Q 000685 16 KIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDD 95 (1352)
Q Consensus 16 ~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~sVaF~Dg 95 (1352)
-+.|||+|+|+|+++.- .+.|=|.++-+.++-|.. .+.|. +|-.. ...-.+.++.+.++
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c--ldki~-------yieW~-----------ads~~ilC~~yk~~ 71 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC--LDKIV-------YIEWK-----------ADSCHILCVAYKDP 71 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH--HHHhh-------heeee-----------ccceeeeeeeeccc
Confidence 46899999999999765 777888776554332221 01111 11100 00134566666899
Q ss_pred eEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccccccCCCCeEEEEEee
Q 000685 96 DVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLS 174 (1352)
Q Consensus 96 ~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~h~~~V~~vaf~P 174 (1352)
.|.+|++...+.. ..+......+.+++|||||+++|.+...+-.+ +|.+.+.++..+ ......+..++|
T Consensus 72 ~vqvwsl~Qpew~-----ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~---~~pK~~~kg~~f-- 141 (447)
T KOG4497|consen 72 KVQVWSLVQPEWY-----CKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL---PHPKTNVKGYAF-- 141 (447)
T ss_pred eEEEEEeecceeE-----EEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe---cccccCceeEEE--
Confidence 9999999876543 23333366789999999999888888877777 788877655433 223445577889
Q ss_pred ccccCCCCEEEEEEC------------------------------------CCcEEEEECCCCeEEEEEecCCCCCeeEE
Q 000685 175 RSAVGDVPLVAFGSS------------------------------------DGVIRVLSMISWKLVRRYTGGHKGSISCL 218 (1352)
Q Consensus 175 ~s~Spdg~~LasGs~------------------------------------DGtIrIWDl~t~~~i~~l~~gH~~~V~sl 218 (1352)
+++|++.+.++. +..+.+||---.-.+..+ ...-.+..+
T Consensus 142 ---~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY--e~~lG~k~v 216 (447)
T KOG4497|consen 142 ---HPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY--ERGLGLKFV 216 (447)
T ss_pred ---CCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee--eeccceeEE
Confidence 568888777764 122344442111111111 122456666
Q ss_pred EEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceeccccccc-------------ccccceEEEEeeccCCCCCEEEEEE
Q 000685 219 MTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLK-------------AHDGGVVAVELSRVMGGSPQLITIG 285 (1352)
Q Consensus 219 awf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~-------------gH~~~V~slafsp~~~dg~~LaSgs 285 (1352)
. .+|.+++|+.|+.|+.+|+.+--+.+...++.....+. .-.-...++.|.|. ++=+.-.
T Consensus 217 ~---wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~----~~~a~~~ 289 (447)
T KOG4497|consen 217 E---WSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPT----DLEAHIW 289 (447)
T ss_pred E---eccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCC----ccccCcc
Confidence 5 68999999999999999997765544333221111110 01112345667662 1111111
Q ss_pred CCCcEEEEECC-CCeEEEEecCCCcccccCCceeEEEeCCCCCEEEEecCCe-----EEeccCCcccccccCccccCCCC
Q 000685 286 ADKTLAIWDTV-SFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSH-----IWAIEHPTYSALTRPLCELSSLV 359 (1352)
Q Consensus 286 ~DgtV~IWDl~-tg~~l~~~~~~~~l~~hs~~V~svafspdg~lLS~s~Dg~-----IWDi~t~~~~~~~~~l~~~~~~~ 359 (1352)
.... .+|... +-..++.+++..........+.-++|++|..+++.-.|.. |||++..+.
T Consensus 290 ~~se-~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l-------------- 354 (447)
T KOG4497|consen 290 EESE-TIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKL-------------- 354 (447)
T ss_pred ccch-hhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhh--------------
Confidence 1110 112221 2334556665555555556777899999999998877773 788885421
Q ss_pred CCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCC
Q 000685 360 PPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1352)
Q Consensus 360 ~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~ 401 (1352)
...--... +|....|+|..+.++++.+.... .+|.+.
T Consensus 355 --~avLiQk~-piraf~WdP~~prL~vctg~srL--Y~W~ps 391 (447)
T KOG4497|consen 355 --HAVLIQKH-PIRAFEWDPGRPRLVVCTGKSRL--YFWAPS 391 (447)
T ss_pred --hhhhhhcc-ceeEEEeCCCCceEEEEcCCceE--EEEcCC
Confidence 11111222 79999999977776655555443 588654
No 212
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.19 E-value=2.6e-10 Score=122.98 Aligned_cols=271 Identities=17% Similarity=0.149 Sum_probs=172.4
Q ss_pred cCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccccccCCCCeEEEE
Q 000685 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCME 171 (1352)
Q Consensus 93 ~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~h~~~V~~va 171 (1352)
.-|.+++|++.+.+.. .....++...|+.+.--|++. +.+-+.|..+ .|++.-... ...|.-.++++.
T Consensus 33 ~~G~V~~w~lqt~r~~----~~~r~~g~~~it~lq~~p~d~--l~tqgRd~~L~lw~ia~s~~-----i~i~Si~~nslg 101 (323)
T KOG0322|consen 33 SVGIVKMWVLQTERDL----PLIRLFGRLFITNLQSIPNDS--LDTQGRDPLLILWTIAYSAF-----ISIHSIVVNSLG 101 (323)
T ss_pred ccceEEEEEeecCccc----hhhhhhccceeeceeecCCcc--hhhcCCCceEEEEEccCcce-----EEEeeeeccccc
Confidence 4688999999988664 444546677888888888754 4555555555 666654332 233445556666
Q ss_pred EeeccccCCCC----EEEEEECCCc-EEEEECCCCeEEEEEe---cCCCCCeeEEEEeeeCCC-CCEEEEEeCCCcEEEE
Q 000685 172 FLSRSAVGDVP----LVAFGSSDGV-IRVLSMISWKLVRRYT---GGHKGSISCLMTFMASSG-EALLVSGGSDGLLILW 242 (1352)
Q Consensus 172 f~P~s~Spdg~----~LasGs~DGt-IrIWDl~t~~~i~~l~---~gH~~~V~slawf~~s~d-g~~LaSgS~DGtVrVW 242 (1352)
|.+.+.++.++ .++.-+.... +.+-|......++... .+..+.++|..|- +... .-+++.|-.+|.|.+|
T Consensus 102 FCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~-~~c~s~~lllaGyEsghvv~w 180 (323)
T KOG0322|consen 102 FCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD-HACGSTFLLLAGYESGHVVIW 180 (323)
T ss_pred cccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc-ccccceEEEEEeccCCeEEEE
Confidence 65433232221 1222111110 2222322222222111 2456788888752 2222 2356678889999999
Q ss_pred eCCCCCcccee----cccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCC--eEEEEecCCCcccccCCc
Q 000685 243 SADHGQDSREL----VPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSF--KELRRIKPVPKLACHSVA 316 (1352)
Q Consensus 243 Dl~tg~~~~~~----~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg--~~l~~~~~~~~l~~hs~~ 316 (1352)
|+.++..+-.+ ........|..+|.++.|.+ ....=++|+.+..+.+|+++.. .+... ....-..-.
T Consensus 181 d~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas---~~~rGisgga~dkl~~~Sl~~s~gslq~~----~e~~lknpG 253 (323)
T KOG0322|consen 181 DLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS---SCDRGISGGADDKLVMYSLNHSTGSLQIR----KEITLKNPG 253 (323)
T ss_pred EccCCceeeccccccccccchhhccCcceeeeech---hhcCCcCCCccccceeeeeccccCccccc----ceEEecCCC
Confidence 99987433221 22333577999999999988 3445578888889999988743 22111 011222345
Q ss_pred eeEEEeCCCCCEE-EEecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCe
Q 000685 317 SWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGV 393 (1352)
Q Consensus 317 V~svafspdg~lL-S~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~ 393 (1352)
|..+..-||++++ ++|.|++ ||..++. .++..+..|.. .|.+++|+| +..++|.++.|+.
T Consensus 254 v~gvrIRpD~KIlATAGWD~RiRVyswrtl---------------~pLAVLkyHsa-gvn~vAfsp-d~~lmAaaskD~r 316 (323)
T KOG0322|consen 254 VSGVRIRPDGKILATAGWDHRIRVYSWRTL---------------NPLAVLKYHSA-GVNAVAFSP-DCELMAAASKDAR 316 (323)
T ss_pred ccceEEccCCcEEeecccCCcEEEEEeccC---------------Cchhhhhhhhc-ceeEEEeCC-CCchhhhccCCce
Confidence 6678899999988 6899996 7777754 46778888987 999999999 6788999999999
Q ss_pred EEEEecC
Q 000685 394 IISEFDP 400 (1352)
Q Consensus 394 IlriWd~ 400 (1352)
| .+|++
T Consensus 317 I-SLWkL 322 (323)
T KOG0322|consen 317 I-SLWKL 322 (323)
T ss_pred E-Eeeec
Confidence 8 79974
No 213
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.17 E-value=5.7e-09 Score=117.61 Aligned_cols=236 Identities=12% Similarity=0.149 Sum_probs=167.7
Q ss_pred CeeeeeecCCCCeEEEEEecCcEEEEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCC--cEEEEECC
Q 000685 122 GFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDG--VIRVLSMI 199 (1352)
Q Consensus 122 ~V~slafspdg~~lLasgs~D~~I~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DG--tIrIWDl~ 199 (1352)
.+..+.|+.+.. +|..|+.||.-++....... ..........|-.+-| ...+++..+.+. .+++++++
T Consensus 7 ti~~~~~Nqd~~-~lsvGs~~Gyk~~~~~~~~k--~~~~~~~~~~IvEmLF-------SSSLvaiV~~~qpr~Lkv~~~K 76 (391)
T KOG2110|consen 7 TINFIGFNQDST-LLSVGSKDGYKIFSCSPFEK--CFSKDTEGVSIVEMLF-------SSSLVAIVSIKQPRKLKVVHFK 76 (391)
T ss_pred ceeeeeecccee-EEEccCCCceeEEecCchHH--hhcccCCCeEEEEeec-------ccceeEEEecCCCceEEEEEcc
Confidence 456666888886 99999999998885544321 1112233446666777 355666666544 49999999
Q ss_pred CCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCC
Q 000685 200 SWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSP 279 (1352)
Q Consensus 200 t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~ 279 (1352)
.+..+..+. ....|.++. . +.+.|+.+-.+ .|.|||+++-+.++++ .+...|..++.++++++ ++.
T Consensus 77 k~~~ICe~~--fpt~IL~Vr---m--Nr~RLvV~Lee-~IyIydI~~MklLhTI---~t~~~n~~gl~AlS~n~---~n~ 142 (391)
T KOG2110|consen 77 KKTTICEIF--FPTSILAVR---M--NRKRLVVCLEE-SIYIYDIKDMKLLHTI---ETTPPNPKGLCALSPNN---ANC 142 (391)
T ss_pred cCceEEEEe--cCCceEEEE---E--ccceEEEEEcc-cEEEEecccceeehhh---hccCCCccceEeeccCC---CCc
Confidence 888887774 667888886 2 44566665544 4999999998877653 22345777787777776 566
Q ss_pred EEEEEE--CCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEE-EEecCCe---EEeccCCcccccccCcc
Q 000685 280 QLITIG--ADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH---IWAIEHPTYSALTRPLC 353 (1352)
Q Consensus 280 ~LaSgs--~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lL-S~s~Dg~---IWDi~t~~~~~~~~~l~ 353 (1352)
+|+--+ ..|.|.+||..+-+.+.. +..|.+.+-+++|+++|.+| ++|+.|+ |+.+.++..
T Consensus 143 ylAyp~s~t~GdV~l~d~~nl~~v~~------I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k-------- 208 (391)
T KOG2110|consen 143 YLAYPGSTTSGDVVLFDTINLQPVNT------INAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK-------- 208 (391)
T ss_pred eEEecCCCCCceEEEEEcccceeeeE------EEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccE--------
Confidence 777433 468999999998887777 57999999999999999988 5777786 677765521
Q ss_pred ccCCCCCCeEEecC-CcccEEEEEEecCCCcEEEEEECCCeEEEEecCCCCC
Q 000685 354 ELSSLVPPQVLAHH-KKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLP 404 (1352)
Q Consensus 354 ~~~~~~~~~~l~~h-~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~~~p 404 (1352)
...|+.. .-..|++++|+| ++.+|++.++.++| ++|.+.+..
T Consensus 209 -------l~eFRRG~~~~~IySL~Fs~-ds~~L~~sS~TeTV-HiFKL~~~~ 251 (391)
T KOG2110|consen 209 -------LYEFRRGTYPVSIYSLSFSP-DSQFLAASSNTETV-HIFKLEKVS 251 (391)
T ss_pred -------eeeeeCCceeeEEEEEEECC-CCCeEEEecCCCeE-EEEEecccc
Confidence 1222211 123799999999 57779999999997 899877644
No 214
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.17 E-value=1e-08 Score=113.78 Aligned_cols=244 Identities=15% Similarity=0.205 Sum_probs=154.8
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec--cccceeEecccccCCCccccccCCceEEE
Q 000685 13 KIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAMRGGSVKQV 90 (1352)
Q Consensus 13 ~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~~l~~g~V~sV 90 (1352)
...+++|+.|...++.|..+| .+||+.+--+...+-+.. ..+...+. -..++|+..+.... -
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~-~~G~~~veMLfR~N~laLVGGg~~--------------p 70 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFI-DGGFKIVEMLFRSNYLALVGGGSR--------------P 70 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccc-cCchhhhhHhhhhceEEEecCCCC--------------C
Confidence 455699999999888886555 799998752221111111 11111111 22233332211100 0
Q ss_pred EEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEEEee-CCccccccccccCCCCeEE
Q 000685 91 NFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLV-TMRGRDIPKQELDNKSLVC 169 (1352)
Q Consensus 91 aF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl~-t~~~~~i~~~~~h~~~V~~ 169 (1352)
.|....+-|||=...+++. .-.....|.++.+.++ .+++.-.+.+.+|... ..+...............+
T Consensus 71 ky~pNkviIWDD~k~~~i~------el~f~~~I~~V~l~r~---riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~ 141 (346)
T KOG2111|consen 71 KYPPNKVIIWDDLKERCII------ELSFNSEIKAVKLRRD---RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCS 141 (346)
T ss_pred CCCCceEEEEecccCcEEE------EEEeccceeeEEEcCC---eEEEEecCeEEEEEcCCChhheeeeecccCCCceEe
Confidence 1245789999955555542 2222567889998875 4677777777788554 2221111111222233444
Q ss_pred EEEeeccccCCCCEEEE-EECCCcEEEEECCCCeE--EEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCc-EEEEeCC
Q 000685 170 MEFLSRSAVGDVPLVAF-GSSDGVIRVLSMISWKL--VRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL-LILWSAD 245 (1352)
Q Consensus 170 vaf~P~s~Spdg~~Las-Gs~DGtIrIWDl~t~~~--i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGt-VrVWDl~ 245 (1352)
+.- ..+..+|+. |-.-|.|+|-|+...+. ...+. +|.+.|.|++ .+.+|.++||+|..|+ |||||..
T Consensus 142 ~~~-----~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~-AH~s~Iacv~---Ln~~Gt~vATaStkGTLIRIFdt~ 212 (346)
T KOG2111|consen 142 LCP-----TSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIIN-AHDSDIACVA---LNLQGTLVATASTKGTLIRIFDTE 212 (346)
T ss_pred ecC-----CCCceEEEcCCCccceEEEEEhhhcCcCCceEEE-cccCceeEEE---EcCCccEEEEeccCcEEEEEEEcC
Confidence 433 334445554 44679999999976544 23444 9999999998 8999999999999998 6999999
Q ss_pred CCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCC
Q 000685 246 HGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVS 297 (1352)
Q Consensus 246 tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~t 297 (1352)
+|..+.++.. ......|++++|+| +..+|+++|+.|+|+||.++.
T Consensus 213 ~g~~l~E~RR----G~d~A~iy~iaFSp---~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 213 DGTLLQELRR----GVDRADIYCIAFSP---NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCcEeeeeec----CCchheEEEEEeCC---CccEEEEEcCCCeEEEEEeec
Confidence 9998776421 11234599999999 899999999999999999875
No 215
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=1.5e-09 Score=132.80 Aligned_cols=233 Identities=15% Similarity=0.062 Sum_probs=145.8
Q ss_pred CCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecC-c---EEEEEeeCCccccccccccCCCCeEE
Q 000685 94 DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVN-K---AIFLDLVTMRGRDIPKQELDNKSLVC 169 (1352)
Q Consensus 94 Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D-~---~I~wDl~t~~~~~i~~~~~h~~~V~~ 169 (1352)
+..|.+||...... .....+ ...+.++.|+|||+ .|+..+.+ + +.+||+.+++...+..... ...+
T Consensus 183 ~~~i~i~d~dg~~~-----~~lt~~-~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~ 252 (429)
T PRK01742 183 PYEVRVADYDGFNQ-----FIVNRS-SQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGA 252 (429)
T ss_pred eEEEEEECCCCCCc-----eEeccC-CCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCc
Confidence 46899999866532 122232 56789999999998 55554432 2 4477988776544433332 2346
Q ss_pred EEEeeccccCCCCEEEEEE-CCCcEEEE--ECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEe-CCCcEEEEeCC
Q 000685 170 MEFLSRSAVGDVPLVAFGS-SDGVIRVL--SMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGG-SDGLLILWSAD 245 (1352)
Q Consensus 170 vaf~P~s~Spdg~~LasGs-~DGtIrIW--Dl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS-~DGtVrVWDl~ 245 (1352)
+.| +|||++|++++ .+|.+.|| |+.+++. ..+. .|...+.+.. ++|+|+.|+.++ .+|..+||++.
T Consensus 253 ~~w-----SPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt-~~~~~~~~~~---wSpDG~~i~f~s~~~g~~~I~~~~ 322 (429)
T PRK01742 253 PAF-----SPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLT-SGAGNNTEPS---WSPDGQSILFTSDRSGSPQVYRMS 322 (429)
T ss_pred eeE-----CCCCCEEEEEEecCCcEEEEEEECCCCCe-Eeec-cCCCCcCCEE---ECCCCCEEEEEECCCCCceEEEEE
Confidence 788 78999888765 68876665 6666554 4454 5666677776 689999777555 57889999876
Q ss_pred CCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCC
Q 000685 246 HGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPN 325 (1352)
Q Consensus 246 tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspd 325 (1352)
....... +.++.. .+..|+| ++++|+..+.++ +.+||+.+++..... ..+ ...++.|+|+
T Consensus 323 ~~~~~~~------~l~~~~--~~~~~Sp---DG~~ia~~~~~~-i~~~Dl~~g~~~~lt------~~~--~~~~~~~sPd 382 (429)
T PRK01742 323 ASGGGAS------LVGGRG--YSAQISA---DGKTLVMINGDN-VVKQDLTSGSTEVLS------STF--LDESPSISPN 382 (429)
T ss_pred CCCCCeE------EecCCC--CCccCCC---CCCEEEEEcCCC-EEEEECCCCCeEEec------CCC--CCCCceECCC
Confidence 4322111 113333 4578999 788988887765 556999988754321 111 1236789999
Q ss_pred CCEE-EEecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecC
Q 000685 326 LDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSL 380 (1352)
Q Consensus 326 g~lL-S~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~ 380 (1352)
|++| .++.++. +|.+.... ......+..+.. .++..+|+|.
T Consensus 383 G~~i~~~s~~g~~~~l~~~~~~-------------G~~~~~l~~~~g-~~~~p~wsp~ 426 (429)
T PRK01742 383 GIMIIYSSTQGLGKVLQLVSAD-------------GRFKARLPGSDG-QVKFPAWSPY 426 (429)
T ss_pred CCEEEEEEcCCCceEEEEEECC-------------CCceEEccCCCC-CCCCcccCCC
Confidence 9966 4556663 66653211 122344444444 6778888883
No 216
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.14 E-value=2.2e-09 Score=118.82 Aligned_cols=203 Identities=11% Similarity=0.079 Sum_probs=149.7
Q ss_pred CCCeeeeeecCCCCeEEEEEecCcEEEE-EeeCCc-cccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEE
Q 000685 120 TSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMR-GRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLS 197 (1352)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~D~~I~w-Dl~t~~-~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWD 197 (1352)
..+|+|.+|++|+. .++++..+.-+.+ .....+ -....++..|...|++|+| +|..+.|++|+.|..-.+|.
T Consensus 10 ~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdW-----ap~snrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 10 LEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDW-----APKSNRIVTCSHDRNAYVWT 83 (361)
T ss_pred cCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEee-----cCCCCceeEccCCCCccccc
Confidence 45799999999997 7788887776644 444433 3455667889999999999 67899999999999999999
Q ss_pred CC-C--CeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeecc
Q 000685 198 MI-S--WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRV 274 (1352)
Q Consensus 198 l~-t--~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~ 274 (1352)
.. . ++....+. .|+...+|+.| +|.++.|++||.-+.|.||-++....- ++.+..-+.+...|++++|||
T Consensus 84 ~~~~~~WkptlvLl-RiNrAAt~V~W---sP~enkFAVgSgar~isVcy~E~ENdW--WVsKhikkPirStv~sldWhp- 156 (361)
T KOG1523|consen 84 QPSGGTWKPTLVLL-RINRAATCVKW---SPKENKFAVGSGARLISVCYYEQENDW--WVSKHIKKPIRSTVTSLDWHP- 156 (361)
T ss_pred cCCCCeeccceeEE-EeccceeeEee---cCcCceEEeccCccEEEEEEEecccce--ehhhhhCCccccceeeeeccC-
Confidence 83 3 34445555 78999999984 899999999999999999988765432 122223356778899999999
Q ss_pred CCCCCEEEEEECCCcEEEEECC-----CCe---EEEE---ecC-CCcccccCCceeEEEeCCCCCEEE-EecCCeE
Q 000685 275 MGGSPQLITIGADKTLAIWDTV-----SFK---ELRR---IKP-VPKLACHSVASWCHPRAPNLDILT-CVKDSHI 337 (1352)
Q Consensus 275 ~~dg~~LaSgs~DgtV~IWDl~-----tg~---~l~~---~~~-~~~l~~hs~~V~svafspdg~lLS-~s~Dg~I 337 (1352)
++-+|+.||.|+..|||..- +.. ..-. |.. ........+.|..+.|+|+|..|+ .+.|+.+
T Consensus 157 --nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v 230 (361)
T KOG1523|consen 157 --NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTV 230 (361)
T ss_pred --CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCce
Confidence 78899999999999999642 100 0000 000 001234556788999999999775 6778764
No 217
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.14 E-value=1.3e-09 Score=135.78 Aligned_cols=192 Identities=18% Similarity=0.311 Sum_probs=152.1
Q ss_pred CCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceeccccc
Q 000685 179 GDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLS 258 (1352)
Q Consensus 179 pdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~ 258 (1352)
-+...++.++.++.+.+||...+.....+.........++.-+.++.+.-++++|+.-+.|.+|+....+. + ..
T Consensus 97 ~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~-----p-~~ 170 (967)
T KOG0974|consen 97 EENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK-----P-IR 170 (967)
T ss_pred hhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC-----c-ce
Confidence 36778999999999999999987777666412111222222234788888999999999999999872221 1 14
Q ss_pred ccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEEEEecCCe--
Q 000685 259 LKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSH-- 336 (1352)
Q Consensus 259 l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lLS~s~Dg~-- 336 (1352)
+.||++.+.++.|+- +++++++.|+|+++|+|++.+.+.+. ...-+|+..||.+.|+|+ .++++|+|.+
T Consensus 171 l~GHeG~iF~i~~s~---dg~~i~s~SdDRsiRlW~i~s~~~~~-----~~~fgHsaRvw~~~~~~n-~i~t~gedctcr 241 (967)
T KOG0974|consen 171 LKGHEGSIFSIVTSL---DGRYIASVSDDRSIRLWPIDSREVLG-----CTGFGHSARVWACCFLPN-RIITVGEDCTCR 241 (967)
T ss_pred ecccCCceEEEEEcc---CCcEEEEEecCcceeeeecccccccC-----cccccccceeEEEEeccc-eeEEeccceEEE
Confidence 799999999999998 89999999999999999999987655 235799999999999999 8889999996
Q ss_pred EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCCC
Q 000685 337 IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSL 403 (1352)
Q Consensus 337 IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~~~ 403 (1352)
+|+.+... ..++..|....||.++.++ +...++|+++||.+ ++|+...+
T Consensus 242 vW~~~~~~----------------l~~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~l-k~~~l~~r 290 (967)
T KOG0974|consen 242 VWGVNGTQ----------------LEVYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTL-KLWDLNGR 290 (967)
T ss_pred EEecccce----------------ehhhhhhhhcceeEEEEcC-CceEEEeeccCcch-hhhhhhcc
Confidence 89766321 2366677777899999999 78889999999997 89997653
No 218
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.12 E-value=3.4e-09 Score=117.42 Aligned_cols=248 Identities=14% Similarity=0.118 Sum_probs=176.2
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCcccccc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~ 83 (1352)
+..|.---..|+|.+|++|+..+|.+-.+..|.||.......-..+
T Consensus 3 ~~~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~---------------------------------- 48 (361)
T KOG1523|consen 3 VVVFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPA---------------------------------- 48 (361)
T ss_pred eEEeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceec----------------------------------
Confidence 4455556689999999999999999999999999997653311111
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCc-EEEEEe-eCCccccccccc
Q 000685 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNK-AIFLDL-VTMRGRDIPKQE 161 (1352)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~-~I~wDl-~t~~~~~i~~~~ 161 (1352)
.++.. |...|++++|+|..+ .|++|+.|. ..+|.. ..++-+....+.
T Consensus 49 -----------------------------htls~-Hd~~vtgvdWap~sn-rIvtcs~drnayVw~~~~~~~WkptlvLl 97 (361)
T KOG1523|consen 49 -----------------------------HTLSE-HDKIVTGVDWAPKSN-RIVTCSHDRNAYVWTQPSGGTWKPTLVLL 97 (361)
T ss_pred -----------------------------eehhh-hCcceeEEeecCCCC-ceeEccCCCCccccccCCCCeeccceeEE
Confidence 11112 266688899999987 667776555 447744 555555555567
Q ss_pred cCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCe---EEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCc
Q 000685 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK---LVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL 238 (1352)
Q Consensus 162 ~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~---~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGt 238 (1352)
.++...+|+.| +|.++.|++||.-..|.||-++... .-+.+...+...|.++.| ++++-+|+.||.|+.
T Consensus 98 RiNrAAt~V~W-----sP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldW---hpnnVLlaaGs~D~k 169 (361)
T KOG1523|consen 98 RINRAATCVKW-----SPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDW---HPNNVLLAAGSTDGK 169 (361)
T ss_pred EeccceeeEee-----cCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeec---cCCcceecccccCcc
Confidence 78999999999 7899999999999999999886432 123334468899999995 788899999999999
Q ss_pred EEEEeCC-----CC-------Cc--cceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCe-EEEE
Q 000685 239 LILWSAD-----HG-------QD--SRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK-ELRR 303 (1352)
Q Consensus 239 VrVWDl~-----tg-------~~--~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~-~l~~ 303 (1352)
+||+..- .. .. ... ....+....+.|..+.|+| +|..|+-.+.|.++.+=|..... .++.
T Consensus 170 ~rVfSayIK~Vdekpap~pWgsk~PFG~--lm~E~~~~ggwvh~v~fs~---sG~~lawv~Hds~v~~~da~~p~~~v~~ 244 (361)
T KOG1523|consen 170 CRVFSAYIKGVDEKPAPTPWGSKMPFGQ--LMSEASSSGGWVHGVLFSP---SGNRLAWVGHDSTVSFVDAAGPSERVQS 244 (361)
T ss_pred eeEEEEeeeccccCCCCCCCccCCcHHH--HHHhhccCCCceeeeEeCC---CCCEeeEecCCCceEEeecCCCchhccc
Confidence 9999642 10 00 000 0112334567899999999 89999999999999999977654 2332
Q ss_pred ecCCCcccccCCceeEEEeCCCCCEEEEecCC
Q 000685 304 IKPVPKLACHSVASWCHPRAPNLDILTCVKDS 335 (1352)
Q Consensus 304 ~~~~~~l~~hs~~V~svafspdg~lLS~s~Dg 335 (1352)
+..-..+..++.|-.+..+++++.|.
T Consensus 245 ------~~~~~lP~ls~~~ise~~vv~ag~~c 270 (361)
T KOG1523|consen 245 ------VATAQLPLLSVSWISENSVVAAGYDC 270 (361)
T ss_pred ------hhhccCCceeeEeecCCceeecCCCC
Confidence 22222455577777676677776663
No 219
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=9.3e-10 Score=127.12 Aligned_cols=271 Identities=14% Similarity=0.212 Sum_probs=183.0
Q ss_pred cccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEE
Q 000685 116 VSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIR 194 (1352)
Q Consensus 116 ~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIr 194 (1352)
...|.+.|..+.|+..|. ++++|++|..+ +||+..++. ......+|...|....|.|. .+..-+++++.||.++
T Consensus 138 L~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~-~l~f~SGH~~NvfQaKFiP~---s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSP-KLSFESGHCNNVFQAKFIPF---SGDRTIVTSSRDGQVR 212 (559)
T ss_pred ccCCCCccceeeecccCc-eeeccCccceEEeehhhccCc-ccccccccccchhhhhccCC---CCCcCceeccccCcee
Confidence 344588999999999998 99999999887 778887654 33345678888888889884 4566799999999999
Q ss_pred EEECCC-CeEE--EEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceeccccccccccc---ceEE
Q 000685 195 VLSMIS-WKLV--RRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDG---GVVA 268 (1352)
Q Consensus 195 IWDl~t-~~~i--~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~---~V~s 268 (1352)
+=.+.. +.+. +.+ ..|.+.|..++ ..+-....|.|++.|+.|.-.|++.+.....+. .-..+.. ..+.
T Consensus 213 ~s~i~~t~~~e~t~rl-~~h~g~vhkla--v~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~---cr~~~~~~~v~L~~ 286 (559)
T KOG1334|consen 213 VSEILETGYVENTKRL-APHEGPVHKLA--VEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV---CREADEKERVGLYT 286 (559)
T ss_pred eeeeccccceecceec-ccccCccceee--ecCCCCCcccccccccceeeeeeccCCccceee---eeccCCccceeeee
Confidence 977653 3332 233 37999999997 234455689999999999999999876544332 1233333 5788
Q ss_pred EEeeccCCCCCEEEEEECCCcEEEEECCCCeE------EEEecCCCcccccCCceeEEEeCCC-CCEEEEecCCeEEecc
Q 000685 269 VELSRVMGGSPQLITIGADKTLAIWDTVSFKE------LRRIKPVPKLACHSVASWCHPRAPN-LDILTCVKDSHIWAIE 341 (1352)
Q Consensus 269 lafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~------l~~~~~~~~l~~hs~~V~svafspd-g~lLS~s~Dg~IWDi~ 341 (1352)
++.+| .+..++++|+.|..+++||.+.-.. +..|-+..-.......|++++|+.+ +.+++.-.|-.||-.+
T Consensus 287 Ia~~P--~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~ 364 (559)
T KOG1334|consen 287 IAVDP--RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFN 364 (559)
T ss_pred EecCC--CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEec
Confidence 99999 3667999999999999999875332 2333332223334457899999966 4577766666544333
Q ss_pred CCcccccccC--ccccCCCCCCeEEecCCc-ccEEEEEEecCCCcEEEEEECCCeEEEEecCCC
Q 000685 342 HPTYSALTRP--LCELSSLVPPQVLAHHKK-LRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1352)
Q Consensus 342 t~~~~~~~~~--l~~~~~~~~~~~l~~h~~-~~V~~la~sp~~~~lLatGs~DG~IlriWd~~~ 402 (1352)
.. ......+ ....... ....+.+|.+ ..|.++-|---...++++|++.|.| .+|+-.+
T Consensus 365 ~~-~~~G~~p~~~s~~~~~-~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhI-FiW~K~t 425 (559)
T KOG1334|consen 365 KS-MGDGSEPDPSSPREQY-VKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHI-FIWDKKT 425 (559)
T ss_pred cc-cccCCCCCCCcchhhc-cchhhcccccccccceeeeccCccceEEecCccceE-EEEecch
Confidence 21 1111000 0000011 1223666653 3578887764467899999999998 6998554
No 220
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=1e-08 Score=114.97 Aligned_cols=195 Identities=13% Similarity=0.129 Sum_probs=126.6
Q ss_pred CCCeeeeeecCCCCeEEEEEecCcEEEE-EeeCCccc-----------cccccccCCCCeEEEEEeeccccCCCCEEEEE
Q 000685 120 TSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGR-----------DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFG 187 (1352)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~D~~I~w-Dl~t~~~~-----------~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasG 187 (1352)
...|.|++|-|.+..-|++|+..++.+| +-.+.... .+....+ ..+|+++.| .+||..++++
T Consensus 140 QrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pg-h~pVtsmqw-----n~dgt~l~tA 213 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPG-HNPVTSMQW-----NEDGTILVTA 213 (445)
T ss_pred hcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhheeCCC-CceeeEEEE-----cCCCCEEeec
Confidence 3458899999988779999999999999 33322211 1111122 368999999 7799999998
Q ss_pred E-CCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccce
Q 000685 188 S-SDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGV 266 (1352)
Q Consensus 188 s-~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V 266 (1352)
+ .|..|.|||..++..+.... -..+.+.-+. ++||+.+|+.+.-|+..++|+....--... ..--.+.|
T Consensus 214 S~gsssi~iWdpdtg~~~pL~~-~glgg~slLk---wSPdgd~lfaAt~davfrlw~e~q~wt~er------w~lgsgrv 283 (445)
T KOG2139|consen 214 SFGSSSIMIWDPDTGQKIPLIP-KGLGGFSLLK---WSPDGDVLFAATCDAVFRLWQENQSWTKER------WILGSGRV 283 (445)
T ss_pred ccCcceEEEEcCCCCCcccccc-cCCCceeeEE---EcCCCCEEEEecccceeeeehhcccceecc------eeccCCce
Confidence 8 56789999999987765543 3456677776 699999999999999999996543211111 12223479
Q ss_pred EEEEeeccCCCCCE-EEEEECCCcEEEEECCC----Ce--------EEE---EecCCCcccc---cCCceeEEEeCCCCC
Q 000685 267 VAVELSRVMGGSPQ-LITIGADKTLAIWDTVS----FK--------ELR---RIKPVPKLAC---HSVASWCHPRAPNLD 327 (1352)
Q Consensus 267 ~slafsp~~~dg~~-LaSgs~DgtV~IWDl~t----g~--------~l~---~~~~~~~l~~---hs~~V~svafspdg~ 327 (1352)
...+|+| +|+. |++++..- ++|.+.- +. .+. .+.......+ -.+..-+++|.|.|.
T Consensus 284 qtacWsp---cGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGe 358 (445)
T KOG2139|consen 284 QTACWSP---CGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGE 358 (445)
T ss_pred eeeeecC---CCCEEEEEEcCCc--eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCC
Confidence 9999999 5554 44555433 3443321 00 000 0000111111 134566999999999
Q ss_pred EEEEecCC
Q 000685 328 ILTCVKDS 335 (1352)
Q Consensus 328 lLS~s~Dg 335 (1352)
+++....+
T Consensus 359 yLav~fKg 366 (445)
T KOG2139|consen 359 YLAVIFKG 366 (445)
T ss_pred EEEEEEcC
Confidence 88776444
No 221
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.10 E-value=4.5e-09 Score=132.16 Aligned_cols=271 Identities=14% Similarity=0.161 Sum_probs=174.5
Q ss_pred EECCCCcEEEEEeccCccce--EEeccccceeEecccccCCCccccccCCceEEEEEcCCeEEEEEcCCccccc-ccccc
Q 000685 38 WNWEHRQVIYELKAGGVDQR--RLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAA-AEAPT 114 (1352)
Q Consensus 38 WDl~tg~~i~t~~~~~~~~i--~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~-~~~~~ 114 (1352)
|+. .|..+..+..|....+ ....+.+.++++|+ .||+||+|+...-..-. .....
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS---------------------~DGtVKvW~~~k~~~~~~s~rS~ 1091 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGS---------------------DDGTVKVWNLRKLEGEGGSARSE 1091 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEec---------------------CCceEEEeeehhhhcCcceeeee
Confidence 664 4777777764432222 22225667888886 78999999987532210 00011
Q ss_pred cccc-CCCCeeeeeecCCCCeEEEEEecCcEEEE-EeeC--Ccc---cc--ccccccCCCCeEEEEEeeccccCCCC-EE
Q 000685 115 AVSN-VTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVT--MRG---RD--IPKQELDNKSLVCMEFLSRSAVGDVP-LV 184 (1352)
Q Consensus 115 ~~~~-~~~~V~slafspdg~~lLasgs~D~~I~w-Dl~t--~~~---~~--i~~~~~h~~~V~~vaf~P~s~Spdg~-~L 184 (1352)
...+ ..+.+.++.+.+.++ .+++++.||.++| ++.- .+. .+ ++.....+..|.+-+|. ...+. .+
T Consensus 1092 ltys~~~sr~~~vt~~~~~~-~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~----~~~~S~~l 1166 (1431)
T KOG1240|consen 1092 LTYSPEGSRVEKVTMCGNGD-QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFT----AIVQSHVL 1166 (1431)
T ss_pred EEEeccCCceEEEEeccCCC-eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeeccc----ccccceeE
Confidence 1111 366788899999887 7788899999977 4433 111 11 12222233444555553 23344 78
Q ss_pred EEEECCCcEEEEECCCCeEEEEEe-cCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccc
Q 000685 185 AFGSSDGVIRVLSMISWKLVRRYT-GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHD 263 (1352)
Q Consensus 185 asGs~DGtIrIWDl~t~~~i~~l~-~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~ 263 (1352)
+.+...+.|..||.++.....++. ....+.|++++ .++.++++++|...|.+.+||++=+..+..| -.++.
T Consensus 1167 vy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~---idp~~~WlviGts~G~l~lWDLRF~~~i~sw-----~~P~~ 1238 (1431)
T KOG1240|consen 1167 VYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIV---IDPWCNWLVIGTSRGQLVLWDLRFRVPILSW-----EHPAR 1238 (1431)
T ss_pred EEEEeccceEEecchhhhhHHhhhcCccccceeEEE---ecCCceEEEEecCCceEEEEEeecCceeecc-----cCccc
Confidence 889999999999998765444332 13457899997 8999999999999999999999987766554 23455
Q ss_pred cceEEEEeeccCCCCCEEEEEEC--CCcEEEEECCCCeEEEEecCCC---cc----c------ccC-CceeEEEeCCCCC
Q 000685 264 GGVVAVELSRVMGGSPQLITIGA--DKTLAIWDTVSFKELRRIKPVP---KL----A------CHS-VASWCHPRAPNLD 327 (1352)
Q Consensus 264 ~~V~slafsp~~~dg~~LaSgs~--DgtV~IWDl~tg~~l~~~~~~~---~l----~------~hs-~~V~svafspdg~ 327 (1352)
.+++.+..+|........++++. .+.|.+|++.+|.+.+.+.... .+ . -+. ..+.+....+++.
T Consensus 1239 ~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~ 1318 (1431)
T KOG1240|consen 1239 APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGF 1318 (1431)
T ss_pred CCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCce
Confidence 78888998886444466666654 7789999999998776653320 01 0 111 1233444445566
Q ss_pred EEEEecCCe--EEeccCC
Q 000685 328 ILTCVKDSH--IWAIEHP 343 (1352)
Q Consensus 328 lLS~s~Dg~--IWDi~t~ 343 (1352)
+++|+.|.+ .||....
T Consensus 1319 ~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1319 LLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred eeecCCccceeeccCCCc
Confidence 778888885 6998754
No 222
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=1.8e-08 Score=118.47 Aligned_cols=196 Identities=14% Similarity=0.174 Sum_probs=139.5
Q ss_pred EEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCC
Q 000685 168 VCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHG 247 (1352)
Q Consensus 168 ~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg 247 (1352)
+.+++| .+...+++.| ....|.=++++.|+.+.-+. ...+.++++. .++...+|++|+.||.|..||.+..
T Consensus 137 RDm~y~----~~scDly~~g-sg~evYRlNLEqGrfL~P~~-~~~~~lN~v~---in~~hgLla~Gt~~g~VEfwDpR~k 207 (703)
T KOG2321|consen 137 RDMKYH----KPSCDLYLVG-SGSEVYRLNLEQGRFLNPFE-TDSGELNVVS---INEEHGLLACGTEDGVVEFWDPRDK 207 (703)
T ss_pred cccccc----CCCccEEEee-cCcceEEEEccccccccccc-cccccceeee---ecCccceEEecccCceEEEecchhh
Confidence 346664 3445555444 44568888999999988876 5668888887 6788889999999999999999987
Q ss_pred Cccceecccccccccccc-----eEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEe
Q 000685 248 QDSRELVPKLSLKAHDGG-----VVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPR 322 (1352)
Q Consensus 248 ~~~~~~~~~~~l~gH~~~-----V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svaf 322 (1352)
..+..+........|.+. |+++.|+- ++-.+++|..+|.|.|||+++.+++..- -.+...+|..+.|
T Consensus 208 srv~~l~~~~~v~s~pg~~~~~svTal~F~d---~gL~~aVGts~G~v~iyDLRa~~pl~~k-----dh~~e~pi~~l~~ 279 (703)
T KOG2321|consen 208 SRVGTLDAASSVNSHPGGDAAPSVTALKFRD---DGLHVAVGTSTGSVLIYDLRASKPLLVK-----DHGYELPIKKLDW 279 (703)
T ss_pred hhheeeecccccCCCccccccCcceEEEecC---CceeEEeeccCCcEEEEEcccCCceeec-----ccCCccceeeecc
Confidence 766554333334455555 99999986 6899999999999999999998887651 1233446778888
Q ss_pred CCCCC-EEEEecCC---eEEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEe
Q 000685 323 APNLD-ILTCVKDS---HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEF 398 (1352)
Q Consensus 323 spdg~-lLS~s~Dg---~IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriW 398 (1352)
.+.+. -...+.|. +|||-.++. +...+.+.. .+..+++-| ++.+++++-.++-+...+
T Consensus 280 ~~~~~q~~v~S~Dk~~~kiWd~~~Gk---------------~~asiEpt~--~lND~C~~p-~sGm~f~Ane~~~m~~yy 341 (703)
T KOG2321|consen 280 QDTDQQNKVVSMDKRILKIWDECTGK---------------PMASIEPTS--DLNDFCFVP-GSGMFFTANESSKMHTYY 341 (703)
T ss_pred cccCCCceEEecchHHhhhcccccCC---------------ceeeccccC--CcCceeeec-CCceEEEecCCCcceeEE
Confidence 77633 22334555 389988763 233333332 477888888 667788888888764333
No 223
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=1.5e-06 Score=104.13 Aligned_cols=157 Identities=17% Similarity=0.261 Sum_probs=111.7
Q ss_pred cCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCe---------------EEEEEecCCCCCeeEEEEeeeCCC
Q 000685 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK---------------LVRRYTGGHKGSISCLMTFMASSG 226 (1352)
Q Consensus 162 ~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~---------------~i~~l~~gH~~~V~slawf~~s~d 226 (1352)
.......|+.| +.+..+|++|+.||.+++..+.+.. .-+++ .||+..|+-+.| +.+
T Consensus 12 PnnvkL~c~~W-----Nke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtL-eGH~~sV~vvTW---Ne~ 82 (1189)
T KOG2041|consen 12 PNNVKLHCAEW-----NKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTL-EGHNASVMVVTW---NEN 82 (1189)
T ss_pred CCCceEEEEEE-----cccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhh-ccCcceEEEEEe---ccc
Confidence 34567889999 6788999999999999999876421 11334 499999999985 566
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecC
Q 000685 227 EALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKP 306 (1352)
Q Consensus 227 g~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~ 306 (1352)
.+.|-|...+|-|.+|-+-.|+...+. .-....+.|.+++|+. +|..|+..-.||.|.+=.++..+.+..
T Consensus 83 ~QKLTtSDt~GlIiVWmlykgsW~EEM----iNnRnKSvV~SmsWn~---dG~kIcIvYeDGavIVGsvdGNRIwgK--- 152 (1189)
T KOG2041|consen 83 NQKLTTSDTSGLIIVWMLYKGSWCEEM----INNRNKSVVVSMSWNL---DGTKICIVYEDGAVIVGSVDGNRIWGK--- 152 (1189)
T ss_pred cccccccCCCceEEEEeeecccHHHHH----hhCcCccEEEEEEEcC---CCcEEEEEEccCCEEEEeeccceecch---
Confidence 778999999999999999888754431 1233456689999998 899999888999888766654332211
Q ss_pred CCcccccCCceeEEEeCCCCCEE-EEecCC--eEEecc
Q 000685 307 VPKLACHSVASWCHPRAPNLDIL-TCVKDS--HIWAIE 341 (1352)
Q Consensus 307 ~~~l~~hs~~V~svafspdg~lL-S~s~Dg--~IWDi~ 341 (1352)
.+.+. -...+.|++|.+.+ .+-..| +++|..
T Consensus 153 --eLkg~--~l~hv~ws~D~~~~Lf~~ange~hlydnq 186 (1189)
T KOG2041|consen 153 --ELKGQ--LLAHVLWSEDLEQALFKKANGETHLYDNQ 186 (1189)
T ss_pred --hcchh--eccceeecccHHHHHhhhcCCcEEEeccc
Confidence 12221 12258899998744 444445 377765
No 224
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=5.3e-09 Score=118.55 Aligned_cols=254 Identities=14% Similarity=0.146 Sum_probs=168.9
Q ss_pred CCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCcEEEEEec-----cCccceEEec-cccceeEecccccCCCccccc
Q 000685 11 NDKIVKIQLHPTHP--WLVTADASDHVSVWNWEHRQVIYELKA-----GGVDQRRLVG-AKLEKLAEGELEHKGKPTEAM 82 (1352)
Q Consensus 11 s~~V~~lafSPdg~--~LaTgs~DG~VrVWDl~tg~~i~t~~~-----~~~~~i~~vs-~dg~~Lasgs~d~~g~~l~~l 82 (1352)
..+|+.++|.-+++ .|...+.|..+...+.....+...+.. .....|..+. .++
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg------------------ 116 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADG------------------ 116 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCC------------------
Confidence 45778888876655 455555677777777665554443310 0011111111 112
Q ss_pred cCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecC--cEE-EEEeeCCccc----
Q 000685 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVN--KAI-FLDLVTMRGR---- 155 (1352)
Q Consensus 83 ~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D--~~I-~wDl~t~~~~---- 155 (1352)
.+..+ ..+|.+++|....+..-... ...... ...+..+.-++..+.++++|+.. ..+ +||+...+..
T Consensus 117 ---~Litc-~~sG~l~~~~~k~~d~hss~-l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aK 190 (412)
T KOG3881|consen 117 ---TLITC-VSSGNLQVRHDKSGDLHSSK-LIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAK 190 (412)
T ss_pred ---EEEEE-ecCCcEEEEeccCCcccccc-ceeeec-CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeecc
Confidence 21111 26889999988854321100 011111 23456666677777788888887 333 7787765211
Q ss_pred ccccccc---CCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCCeeEEEEeeeCCCCCEEE
Q 000685 156 DIPKQEL---DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-KLVRRYTGGHKGSISCLMTFMASSGEALLV 231 (1352)
Q Consensus 156 ~i~~~~~---h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~-~~i~~l~~gH~~~V~slawf~~s~dg~~La 231 (1352)
.++.-.. -.-+++.+.|.+. .....|++++.-+.+|+||.+.+ +++..+. -.++.++++. ..|++++++
T Consensus 191 NvpnD~L~LrVPvW~tdi~Fl~g---~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd-~~E~~is~~~---l~p~gn~Iy 263 (412)
T KOG3881|consen 191 NVPNDRLGLRVPVWITDIRFLEG---SPNYKFATITRYHQVRLYDTRHQRRPVAQFD-FLENPISSTG---LTPSGNFIY 263 (412)
T ss_pred CCCCccccceeeeeeccceecCC---CCCceEEEEecceeEEEecCcccCcceeEec-cccCcceeee---ecCCCcEEE
Confidence 1111111 1347788999753 12678999999999999999865 5677775 6688999997 789999999
Q ss_pred EEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEE
Q 000685 232 SGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRR 303 (1352)
Q Consensus 232 SgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~ 303 (1352)
+|..-|.+..+|++.++.... .+.+..+.|.+|..|| ..++|+++|-|+.|||+|+.+.+.+..
T Consensus 264 ~gn~~g~l~~FD~r~~kl~g~-----~~kg~tGsirsih~hp---~~~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 264 TGNTKGQLAKFDLRGGKLLGC-----GLKGITGSIRSIHCHP---THPVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred EecccchhheecccCceeecc-----ccCCccCCcceEEEcC---CCceEEeeccceeEEEeecccchhhhh
Confidence 999999999999999876543 3688899999999999 689999999999999999998665544
No 225
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=3.6e-08 Score=120.61 Aligned_cols=171 Identities=15% Similarity=0.047 Sum_probs=110.4
Q ss_pred eeeeecCCCCeEEEEEecCc---EEEEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECC-CcEEE--EE
Q 000685 124 ASPPPSTKGRHFLVICCVNK---AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSD-GVIRV--LS 197 (1352)
Q Consensus 124 ~slafspdg~~lLasgs~D~---~I~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~D-GtIrI--WD 197 (1352)
..+.|+|||+.++++.+.++ +.+||..+++...+ ..+...+....| +|+|+.|+..+.+ +...| +|
T Consensus 246 ~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l---t~~~~~~~~~~w-----SPDG~~I~f~s~~~g~~~Iy~~d 317 (429)
T PRK03629 246 GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV---TDGRSNNTEPTW-----FPDSQNLAYTSDQAGRPQVYKVN 317 (429)
T ss_pred CCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc---cCCCCCcCceEE-----CCCCCEEEEEeCCCCCceEEEEE
Confidence 45789999985555545444 34668887765433 223345677889 7899998887764 44444 46
Q ss_pred CCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCC---CcEEEEeCCCCCccceecccccccccccceEEEEeecc
Q 000685 198 MISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSD---GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRV 274 (1352)
Q Consensus 198 l~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~D---GtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~ 274 (1352)
+.+++.. .+. .+.....+.. ++|+|+.|+..+.+ ..|.+||+.++... . +... .......|+|
T Consensus 318 ~~~g~~~-~lt-~~~~~~~~~~---~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~------Lt~~-~~~~~p~~Sp- 383 (429)
T PRK03629 318 INGGAPQ-RIT-WEGSQNQDAD---VSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-V------LTDT-FLDETPSIAP- 383 (429)
T ss_pred CCCCCeE-Eee-cCCCCccCEE---ECCCCCEEEEEEccCCCceEEEEECCCCCeE-E------eCCC-CCCCCceECC-
Confidence 6666543 333 3334455554 68999998876654 35888999877532 1 1111 1234578999
Q ss_pred CCCCCEEEEEECCCc---EEEEECCCCeEEEEecCCCcccccCCceeEEEeCCC
Q 000685 275 MGGSPQLITIGADKT---LAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPN 325 (1352)
Q Consensus 275 ~~dg~~LaSgs~Dgt---V~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspd 325 (1352)
|+.+|+.++.|+. +.+|++. |...+. +.+|...+...+|+|-
T Consensus 384 --DG~~i~~~s~~~~~~~l~~~~~~-G~~~~~------l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 384 --NGTMVIYSSSQGMGSVLNLVSTD-GRFKAR------LPATDGQVKFPAWSPY 428 (429)
T ss_pred --CCCEEEEEEcCCCceEEEEEECC-CCCeEE------CccCCCCcCCcccCCC
Confidence 8999998888764 6777874 544454 4567777778888873
No 226
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.03 E-value=3.9e-09 Score=123.17 Aligned_cols=229 Identities=18% Similarity=0.235 Sum_probs=154.2
Q ss_pred eeeeeecCCCCeEEEEEecCcEEEEEee--CCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCC
Q 000685 123 FASPPPSTKGRHFLVICCVNKAIFLDLV--TMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS 200 (1352)
Q Consensus 123 V~slafspdg~~lLasgs~D~~I~wDl~--t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t 200 (1352)
+....++-.|+ .|+-.-.+.+.+|+++ +...+.+..........+|-+|......+++--++.|-.-|.|.+.|...
T Consensus 126 ~~~~~~~~~gd-~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~ 204 (636)
T KOG2394|consen 126 VTNTNQSGKGD-RLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN 204 (636)
T ss_pred eeeccccCCCC-EEEEecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence 34444555666 5555555666677666 32233444444556667777775433456777788999999999999876
Q ss_pred CeEEEEEe---cCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCC--------------Cc--c------ceecc
Q 000685 201 WKLVRRYT---GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHG--------------QD--S------RELVP 255 (1352)
Q Consensus 201 ~~~i~~l~---~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg--------------~~--~------~~~~~ 255 (1352)
.+..+.+. .-....|+|+.|. .-+...|+.+..+|.+.++|.... .. + ..-.|
T Consensus 205 ~~~sklfne~r~i~ktsvT~ikWv--pg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNP 282 (636)
T KOG2394|consen 205 FEVSKLFNEERLINKSSVTCIKWV--PGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNP 282 (636)
T ss_pred hHHHHhhhhcccccccceEEEEEE--eCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCc
Confidence 33222221 0134789999984 556678888899999999976321 00 0 00012
Q ss_pred cccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEE-EEecC
Q 000685 256 KLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKD 334 (1352)
Q Consensus 256 ~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lL-S~s~D 334 (1352)
...+.--.+.|+..+|+| |+.+|++.|.||.+||||+.+.+.+-. +..--+...|++|||||++| +||+|
T Consensus 283 v~~w~~~~g~in~f~FS~---DG~~LA~VSqDGfLRvF~fdt~eLlg~------mkSYFGGLLCvcWSPDGKyIvtGGED 353 (636)
T KOG2394|consen 283 VARWHIGEGSINEFAFSP---DGKYLATVSQDGFLRIFDFDTQELLGV------MKSYFGGLLCVCWSPDGKYIVTGGED 353 (636)
T ss_pred cceeEeccccccceeEcC---CCceEEEEecCceEEEeeccHHHHHHH------HHhhccceEEEEEcCCccEEEecCCc
Confidence 222333345799999999 899999999999999999998765544 34455678899999999976 78888
Q ss_pred C--eEEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEec
Q 000685 335 S--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHS 379 (1352)
Q Consensus 335 g--~IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp 379 (1352)
. +||.+..++. +..-.+|++ .|+.|+|.|
T Consensus 354 DLVtVwSf~erRV---------------VARGqGHkS-WVs~VaFDp 384 (636)
T KOG2394|consen 354 DLVTVWSFEERRV---------------VARGQGHKS-WVSVVAFDP 384 (636)
T ss_pred ceEEEEEeccceE---------------EEecccccc-ceeeEeecc
Confidence 7 4899986532 223346666 999999987
No 227
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.02 E-value=1.4e-08 Score=113.52 Aligned_cols=250 Identities=18% Similarity=0.273 Sum_probs=163.4
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCcEEEEEeccCccceEEec--cccceeEecccccCCCccc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWN-WEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTE 80 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWD-l~tg~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~ 80 (1352)
++.++||.+.|+....-|..+-+++.+.|.++|||- .+.++.-..+...-.....++. .+.+.|..|
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg---------- 86 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVG---------- 86 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEE----------
Confidence 678999999999999999999999999999999995 3444443333211112222222 333444433
Q ss_pred cccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEE-EeeCCccccccc
Q 000685 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPK 159 (1352)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~w-Dl~t~~~~~i~~ 159 (1352)
|..|++.-+.+...-........... |...+..+-|+.... ++++++.|..+.| -.+.+.... .
T Consensus 87 -----------~~ngtvtefs~sedfnkm~~~r~~~~-h~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~~~~lg--~ 151 (404)
T KOG1409|consen 87 -----------QDNGTVTEFALSEDFNKMTFLKDYLA-HQARVSAIVFSLTHE-WVLSTGKDKQFAWHCTESGNRLG--G 151 (404)
T ss_pred -----------EecceEEEEEhhhhhhhcchhhhhhh-hhcceeeEEecCCce-eEEEeccccceEEEeeccCCccc--c
Confidence 24455544443321111011122222 367788888988776 8999999999988 444432210 0
Q ss_pred cccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECC--CCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCC
Q 000685 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI--SWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDG 237 (1352)
Q Consensus 160 ~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~--t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DG 237 (1352)
... ...-+++.| |-.+...|...|.|.+-.+. .-..+.++. +|.+.+.+++| .+...+|.+|..|.
T Consensus 152 Y~~-~~~~t~~~~-------d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~-~h~~~~~~l~W---d~~~~~LfSg~~d~ 219 (404)
T KOG1409|consen 152 YNF-ETPASALQF-------DALYAFVGDHSGQITMLKLEQNGCQLITTFN-GHTGEVTCLKW---DPGQRLLFSGASDH 219 (404)
T ss_pred eEe-eccCCCCce-------eeEEEEecccccceEEEEEeecCCceEEEEc-CcccceEEEEE---cCCCcEEEeccccC
Confidence 000 111112222 11245556666666665443 346667776 99999999985 67788999999999
Q ss_pred cEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCC
Q 000685 238 LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSF 298 (1352)
Q Consensus 238 tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg 298 (1352)
.|.+||+...+.. .+.+.+|.+.|..+.+-+ --+.+++++.||.|.+||++..
T Consensus 220 ~vi~wdigg~~g~-----~~el~gh~~kV~~l~~~~---~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 220 SVIMWDIGGRKGT-----AYELQGHNDKVQALSYAQ---HTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred ceEEEeccCCcce-----eeeeccchhhhhhhhhhh---hheeeeeccCCCeEEEEeccce
Confidence 9999999865532 235789999999999877 5789999999999999999753
No 228
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.02 E-value=1.5e-09 Score=126.14 Aligned_cols=185 Identities=10% Similarity=0.083 Sum_probs=133.5
Q ss_pred EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCC
Q 000685 6 AFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGG 85 (1352)
Q Consensus 6 ~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g 85 (1352)
....|.+.|.|-.|+|||.-|+|++.||.|++|. .+|-+..++
T Consensus 99 sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl------------------------------------ 141 (737)
T KOG1524|consen 99 SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTV------------------------------------ 141 (737)
T ss_pred hhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHH------------------------------------
Confidence 4578999999999999999999999999999999 332211111
Q ss_pred ceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEEEeeCCccccccccccCCC
Q 000685 86 SVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNK 165 (1352)
Q Consensus 86 ~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl~t~~~~~i~~~~~h~~ 165 (1352)
......|+|++|.|+...+ +-|..+++++=-+... ..+...+.|.+
T Consensus 142 -------------------------------~Q~~~~v~c~~W~p~S~~v-l~c~g~h~~IKpL~~n--~k~i~WkAHDG 187 (737)
T KOG1524|consen 142 -------------------------------VQNEESIRCARWAPNSNSI-VFCQGGHISIKPLAAN--SKIIRWRAHDG 187 (737)
T ss_pred -------------------------------hhcCceeEEEEECCCCCce-EEecCCeEEEeecccc--cceeEEeccCc
Confidence 1114568899999998744 4444444332222221 12445689999
Q ss_pred CeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCC
Q 000685 166 SLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSAD 245 (1352)
Q Consensus 166 ~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~ 245 (1352)
-|.|+.| ++..++|++|+.|-..+|||-. |..+..-. .|..+|++++ +.|+ ..++.+|. ++.|+=
T Consensus 188 iiL~~~W-----~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~-~~ey~ITSva---~npd-~~~~v~S~-nt~R~~--- 252 (737)
T KOG1524|consen 188 LVLSLSW-----STQSNIIASGGEDFRFKIWDAQ-GANLFTSA-AEEYAITSVA---FNPE-KDYLLWSY-NTARFS--- 252 (737)
T ss_pred EEEEeec-----CccccceeecCCceeEEeeccc-CcccccCC-hhccceeeee---eccc-cceeeeee-eeeeec---
Confidence 9999999 6789999999999999999966 45555444 7999999998 5777 56666553 244411
Q ss_pred CCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEE
Q 000685 246 HGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIW 293 (1352)
Q Consensus 246 tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IW 293 (1352)
....+.|..++|++ ||..+++|+..|.+.+=
T Consensus 253 --------------~p~~GSifnlsWS~---DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 253 --------------SPRVGSIFNLSWSA---DGTQATCGTSTGQLIVA 283 (737)
T ss_pred --------------CCCccceEEEEEcC---CCceeeccccCceEEEe
Confidence 22346699999999 89999999988887653
No 229
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.01 E-value=1.1e-08 Score=127.70 Aligned_cols=195 Identities=19% Similarity=0.192 Sum_probs=139.0
Q ss_pred CeeeeeecCCCCeEEEEEecCcEEEEEeeCCccccccccccCCCCe---EEEEEeeccccCCCCEEEEEECCCcEEEEEC
Q 000685 122 GFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSL---VCMEFLSRSAVGDVPLVAFGSSDGVIRVLSM 198 (1352)
Q Consensus 122 ~V~slafspdg~~lLasgs~D~~I~wDl~t~~~~~i~~~~~h~~~V---~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl 198 (1352)
.+....+..+...+.+..+.+.+..+|...+.. .....+.... .++-+ ..+++.-++++|+--+.|.+|++
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~---~~~i~~~er~~l~~~~~~---g~s~~~~~i~~gsv~~~iivW~~ 162 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSV---LSKIQSDERCTLYSSLII---GDSAEELYIASGSVFGEIIVWKP 162 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCce---ehhcCCCceEEEEeEEEE---eccCcEEEEEeccccccEEEEec
Confidence 344444455555355555555555667765432 1112222211 12222 12667789999999999999999
Q ss_pred CCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCC
Q 000685 199 ISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGS 278 (1352)
Q Consensus 199 ~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg 278 (1352)
...+.-..+. ||.+.|..+. ++.+|.+++|.|.|+++|+|++.+.+... .+.-+|...|+.++|+| +
T Consensus 163 ~~dn~p~~l~-GHeG~iF~i~---~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-----~~~fgHsaRvw~~~~~~---n- 229 (967)
T KOG0974|consen 163 HEDNKPIRLK-GHEGSIFSIV---TSLDGRYIASVSDDRSIRLWPIDSREVLG-----CTGFGHSARVWACCFLP---N- 229 (967)
T ss_pred cccCCcceec-ccCCceEEEE---EccCCcEEEEEecCcceeeeecccccccC-----cccccccceeEEEEecc---c-
Confidence 7322222344 9999999997 78999999999999999999999987654 24678999999999998 3
Q ss_pred CEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCC-ceeEEEeCCCCCEE-EEecCCe--EEeccCC
Q 000685 279 PQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSV-ASWCHPRAPNLDIL-TCVKDSH--IWAIEHP 343 (1352)
Q Consensus 279 ~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~-~V~svafspdg~lL-S~s~Dg~--IWDi~t~ 343 (1352)
.|+|++.|.+.++|+.. ++.+.. +.+|.. .++.++..++..++ +++.|+. +|++...
T Consensus 230 -~i~t~gedctcrvW~~~-~~~l~~------y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 230 -RIITVGEDCTCRVWGVN-GTQLEV------YDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred -eeEEeccceEEEEEecc-cceehh------hhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 99999999999999755 444444 566764 68999999887754 8899996 7887754
No 230
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=1.6e-08 Score=114.85 Aligned_cols=211 Identities=14% Similarity=0.135 Sum_probs=148.1
Q ss_pred ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----EEEEEeccCccceEEec---cccceeEecccccCCCcc
Q 000685 7 FRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQ----VIYELKAGGVDQRRLVG---AKLEKLAEGELEHKGKPT 79 (1352)
Q Consensus 7 L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~----~i~t~~~~~~~~i~~vs---~dg~~Lasgs~d~~g~~l 79 (1352)
..+.+..|..++.. ..+|++|..+|.+++|..+.+. .+..+..+ +.+..+. .+-.+++.|+
T Consensus 101 ~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g--~g~~~~r~~~~~p~Iva~GG-------- 168 (412)
T KOG3881|consen 101 VSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG--PGLYDVRQTDTDPYIVATGG-------- 168 (412)
T ss_pred cccccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC--CceeeeccCCCCCceEecCc--------
Confidence 33444556555554 3489999999999999988443 23333333 2222222 2223344343
Q ss_pred ccccCCceEEEEEcC--CeEEEEEcCCccccccc----cccccccCCCCeeeeeecCCC-CeEEEEEecCcEEEE-EeeC
Q 000685 80 EAMRGGSVKQVNFYD--DDVRFWQLWRNRAAAAE----APTAVSNVTSGFASPPPSTKG-RHFLVICCVNKAIFL-DLVT 151 (1352)
Q Consensus 80 ~~l~~g~V~sVaF~D--g~IrlWDl~t~~~i~~~----~~~~~~~~~~~V~slafspdg-~~lLasgs~D~~I~w-Dl~t 151 (1352)
.. ..+++||+...+.+... ...+.-...-+++++.|-+.. .+.|+++..-+.+++ |...
T Consensus 169 -------------ke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~ 235 (412)
T KOG3881|consen 169 -------------KENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRH 235 (412)
T ss_pred -------------hhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcc
Confidence 23 56888888876443210 011111123456778888751 347899998888876 8886
Q ss_pred CccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEE
Q 000685 152 MRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLV 231 (1352)
Q Consensus 152 ~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~La 231 (1352)
++ +.+..+......++++.. .|++++|++|..-|.+..||+++++.......+-.+.|.++. .+|...+++
T Consensus 236 qR-RPV~~fd~~E~~is~~~l-----~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih---~hp~~~~la 306 (412)
T KOG3881|consen 236 QR-RPVAQFDFLENPISSTGL-----TPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIH---CHPTHPVLA 306 (412)
T ss_pred cC-cceeEeccccCcceeeee-----cCCCcEEEEecccchhheecccCceeeccccCCccCCcceEE---EcCCCceEE
Confidence 54 466667777889999998 678999999999999999999999998885558899999996 789999999
Q ss_pred EEeCCCcEEEEeCCCCCccc
Q 000685 232 SGGSDGLLILWSADHGQDSR 251 (1352)
Q Consensus 232 SgS~DGtVrVWDl~tg~~~~ 251 (1352)
+|+.|+.|||+|+.+.+.+.
T Consensus 307 s~GLDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 307 SCGLDRYVRIHDIKTRKLLH 326 (412)
T ss_pred eeccceeEEEeecccchhhh
Confidence 99999999999999976554
No 231
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.99 E-value=1e-07 Score=106.01 Aligned_cols=179 Identities=17% Similarity=0.295 Sum_probs=121.4
Q ss_pred CcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCCceEEEEEcCCeEEEEEcCCc-cccccc
Q 000685 33 DHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRN-RAAAAE 111 (1352)
Q Consensus 33 G~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~sVaF~Dg~IrlWDl~t~-~~i~~~ 111 (1352)
..|.|||=...+++.++... ..|..+.-....|+.. .++.|.+|...+. +.++ .
T Consensus 75 NkviIWDD~k~~~i~el~f~--~~I~~V~l~r~riVvv----------------------l~~~I~VytF~~n~k~l~-~ 129 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFN--SEIKAVKLRRDRIVVV----------------------LENKIYVYTFPDNPKLLH-V 129 (346)
T ss_pred ceEEEEecccCcEEEEEEec--cceeeEEEcCCeEEEE----------------------ecCeEEEEEcCCChhhee-e
Confidence 57999997777788877643 2333333222222222 5788888988744 2221 1
Q ss_pred cccccccCCCCeeeeeecCCCCeEEEE-EecCcEEEE-EeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEEC
Q 000685 112 APTAVSNVTSGFASPPPSTKGRHFLVI-CCVNKAIFL-DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS 189 (1352)
Q Consensus 112 ~~~~~~~~~~~V~slafspdg~~lLas-gs~D~~I~w-Dl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~ 189 (1352)
..+... ...+.+++-+.+.. +|+. |-.-|.+.+ |+...+.........|...|.|++. +-+|.+++|+|.
T Consensus 130 ~et~~N--PkGlC~~~~~~~k~-~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~L-----n~~Gt~vATaSt 201 (346)
T KOG2111|consen 130 IETRSN--PKGLCSLCPTSNKS-LLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVAL-----NLQGTLVATAST 201 (346)
T ss_pred eecccC--CCceEeecCCCCce-EEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEE-----cCCccEEEEecc
Confidence 111111 12233443333333 4443 345566655 7766544223456899999999999 779999999999
Q ss_pred CCc-EEEEECCCCeEEEEEecCC-CCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCC
Q 000685 190 DGV-IRVLSMISWKLVRRYTGGH-KGSISCLMTFMASSGEALLVSGGSDGLLILWSADHG 247 (1352)
Q Consensus 190 DGt-IrIWDl~t~~~i~~l~~gH-~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg 247 (1352)
.|+ |||||..+++.+..+..|- ...|+|++ |+|+..+|+.+|..|+|+|+.++..
T Consensus 202 kGTLIRIFdt~~g~~l~E~RRG~d~A~iy~ia---FSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 202 KGTLIRIFDTEDGTLLQELRRGVDRADIYCIA---FSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CcEEEEEEEcCCCcEeeeeecCCchheEEEEE---eCCCccEEEEEcCCCeEEEEEeecC
Confidence 997 8999999999999887554 45899997 8999999999999999999998764
No 232
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.99 E-value=2.8e-08 Score=111.52 Aligned_cols=195 Identities=14% Similarity=0.242 Sum_probs=133.5
Q ss_pred CCCeeeeeecCCCCeEEEEEecCcEEEE-EeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEEC
Q 000685 120 TSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSM 198 (1352)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~D~~I~w-Dl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl 198 (1352)
...++.++|++.-- .++++..|-+|++ |-.. ++..+ ........|+|++|-|. .+..|+.|+..| |.||..
T Consensus 98 ~~dlr~~aWhqH~~-~fava~nddvVriy~kss-t~pt~-Lks~sQrnvtclawRPl----saselavgCr~g-IciW~~ 169 (445)
T KOG2139|consen 98 EIDLRGVAWHQHII-AFAVATNDDVVRIYDKSS-TCPTK-LKSVSQRNVTCLAWRPL----SASELAVGCRAG-ICIWSD 169 (445)
T ss_pred hcceeeEeechhhh-hhhhhccCcEEEEeccCC-CCCce-ecchhhcceeEEEeccC----Ccceeeeeecce-eEEEEc
Confidence 34578899998553 6777788888866 4433 22221 12334678999999764 245788887766 889986
Q ss_pred CC----CeE--------EEEEe-cCCCCCeeEEEEeeeCCCCCEEEEEeC-CCcEEEEeCCCCCccceeccccccccccc
Q 000685 199 IS----WKL--------VRRYT-GGHKGSISCLMTFMASSGEALLVSGGS-DGLLILWSADHGQDSRELVPKLSLKAHDG 264 (1352)
Q Consensus 199 ~t----~~~--------i~~l~-~gH~~~V~slawf~~s~dg~~LaSgS~-DGtVrVWDl~tg~~~~~~~~~~~l~gH~~ 264 (1352)
.. ++. ...+. .|| .+|+++.| .+||..+++++. |..|.|||.+++..+.- ..---+
T Consensus 170 s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqw---n~dgt~l~tAS~gsssi~iWdpdtg~~~pL------~~~glg 239 (445)
T KOG2139|consen 170 SRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQW---NEDGTILVTASFGSSSIMIWDPDTGQKIPL------IPKGLG 239 (445)
T ss_pred CcccccccccccccccchhheeCCCC-ceeeEEEE---cCCCCEEeecccCcceEEEEcCCCCCcccc------cccCCC
Confidence 42 111 11111 244 78999984 788999998885 67899999999876532 112345
Q ss_pred ceEEEEeeccCCCCCEEEEEECCCcEEEEECC-CCeEEEEecCCCcccccCCceeEEEeCCCCCEE--EEecCCeEEecc
Q 000685 265 GVVAVELSRVMGGSPQLITIGADKTLAIWDTV-SFKELRRIKPVPKLACHSVASWCHPRAPNLDIL--TCVKDSHIWAIE 341 (1352)
Q Consensus 265 ~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~-tg~~l~~~~~~~~l~~hs~~V~svafspdg~lL--S~s~Dg~IWDi~ 341 (1352)
++.-+.|+| |+.+|..+.-|+..++|... +..+.+- ...++.|....|+|+|..| +++...+|+.+.
T Consensus 240 g~slLkwSP---dgd~lfaAt~davfrlw~e~q~wt~erw-------~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~ 309 (445)
T KOG2139|consen 240 GFSLLKWSP---DGDVLFAATCDAVFRLWQENQSWTKERW-------ILGSGRVQTACWSPCGSFLLFACSGSPRLYSLT 309 (445)
T ss_pred ceeeEEEcC---CCCEEEEecccceeeeehhcccceecce-------eccCCceeeeeecCCCCEEEEEEcCCceEEEEe
Confidence 688899999 89999999999999999543 3333221 2233478899999999944 676666777765
Q ss_pred C
Q 000685 342 H 342 (1352)
Q Consensus 342 t 342 (1352)
-
T Consensus 310 f 310 (445)
T KOG2139|consen 310 F 310 (445)
T ss_pred e
Confidence 3
No 233
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.98 E-value=0.00029 Score=93.38 Aligned_cols=232 Identities=13% Similarity=0.134 Sum_probs=134.2
Q ss_pred CCCeeEEEEeeeCCCCCEEEEEeC---C---CcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEE
Q 000685 212 KGSISCLMTFMASSGEALLVSGGS---D---GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIG 285 (1352)
Q Consensus 212 ~~~V~slawf~~s~dg~~LaSgS~---D---GtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs 285 (1352)
...-..|+| -.||.+|++.+. + +.||||+-+ |...... ..-.+--.+++|.| .|++|++.-
T Consensus 209 dd~~~~ISW---RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stS------E~v~gLe~~l~WrP---sG~lIA~~q 275 (928)
T PF04762_consen 209 DDGRVRISW---RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTS------EPVDGLEGALSWRP---SGNLIASSQ 275 (928)
T ss_pred CCCceEEEE---CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecc------ccCCCccCCccCCC---CCCEEEEEE
Confidence 344556664 788999988775 2 579999976 5432221 11122234689999 789998877
Q ss_pred C---CCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEEEEe-cCC-eEEeccCCcccccccCccccCCCCC
Q 000685 286 A---DKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCV-KDS-HIWAIEHPTYSALTRPLCELSSLVP 360 (1352)
Q Consensus 286 ~---DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lLS~s-~Dg-~IWDi~t~~~~~~~~~l~~~~~~~~ 360 (1352)
. ...|.+|. ++|-....|... +......|..+.|++|+.+|+.. .|. .+|-..+.. |.+
T Consensus 276 ~~~~~~~VvFfE-rNGLrhgeF~l~--~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYH--------WYL----- 339 (928)
T PF04762_consen 276 RLPDRHDVVFFE-RNGLRHGEFTLR--FDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYH--------WYL----- 339 (928)
T ss_pred EcCCCcEEEEEe-cCCcEeeeEecC--CCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCE--------EEE-----
Confidence 4 45677887 555544444321 22345578899999999998754 333 489877532 222
Q ss_pred CeEEecCCcccEEEEEEecCCCcEEEEEECCCeEE-E--EecCCCCCCccccCCCCCCCCceEEEEe-cCeEEEEEeeec
Q 000685 361 PQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVII-S--EFDPRSLPAVAPLPTPSGSRDHSAVYIV-ERELKLVNFQLS 436 (1352)
Q Consensus 361 ~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~Il-r--iWd~~~~p~i~~l~~~s~s~~~~~~~~~-~~~lkl~~fq~~ 436 (1352)
.+.+.......+..+.|||.++..|...+.+|.+. + .|+....+ ..+.. +...+.+. +..+++..|...
T Consensus 340 Kqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~------~~~~~-D~g~vaVIDG~~lllTpf~~a 412 (928)
T PF04762_consen 340 KQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSP------GSSPN-DNGTVAVIDGNKLLLTPFRRA 412 (928)
T ss_pred EEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecC------CCCcc-CceEEEEEeCCeEEEeccccc
Confidence 12333333334556999999898888888866543 2 23322111 11112 34444444 445888888765
Q ss_pred cCCCCCCCCCcccccCCcccCCCchhhhhhhccccccccCCCCCccEEEEcCCCCEEEEEECCCCcEEEEEe
Q 000685 437 SAANPSLGNNGSLSETGRLKGDLPDALQIKQIKKHISTPVPHDSYSILSVSSSGKYLAVVWPDIPYFSVYKV 508 (1352)
Q Consensus 437 ~~~n~~~g~~~~~s~~G~~~~~~~~~l~v~~~~r~i~t~~~~e~~s~l~~SpdGrylavv~~~~g~y~Iy~i 508 (1352)
...+|.. . .+ + .++ .+...+++++++.-++++ ..++.+.+|..
T Consensus 413 ~VPPPMs-~---------------~~---------l--~~~-~~v~~vaf~~~~~~~avl-~~d~~l~~~~~ 455 (928)
T PF04762_consen 413 VVPPPMS-S---------------YE---------L--ELP-SPVNDVAFSPSNSRFAVL-TSDGSLSIYEW 455 (928)
T ss_pred CCCchHh-c---------------eE---------E--cCC-CCcEEEEEeCCCCeEEEE-ECCCCEEEEEe
Confidence 5443221 0 00 0 011 112368888888766444 46667778773
No 234
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.98 E-value=2.6e-09 Score=137.72 Aligned_cols=227 Identities=18% Similarity=0.289 Sum_probs=159.8
Q ss_pred ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCCc
Q 000685 7 FRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGS 86 (1352)
Q Consensus 7 L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~ 86 (1352)
++.|-..|.++.=||..++-+||+.||.|++|.+..++.+..+...+
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g--------------------------------- 2250 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAG--------------------------------- 2250 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccC---------------------------------
Confidence 45566789999999999999999999999999988766665554221
Q ss_pred eEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccccccCCC
Q 000685 87 VKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNK 165 (1352)
Q Consensus 87 V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~h~~ 165 (1352)
...|+.+.|+.+|. -+.++..||.+ .|... .+.....+.|+.
T Consensus 2251 ---------------------------------~s~vtr~~f~~qGn-k~~i~d~dg~l~l~q~~---pk~~~s~qchnk 2293 (2439)
T KOG1064|consen 2251 ---------------------------------NSRVTRSRFNHQGN-KFGIVDGDGDLSLWQAS---PKPYTSWQCHNK 2293 (2439)
T ss_pred ---------------------------------cchhhhhhhcccCC-ceeeeccCCceeecccC---CcceeccccCCc
Confidence 23356677888887 44555555555 66443 223445677888
Q ss_pred CeEEEEEeeccccCCCCEEEEEE---CCCcEEEEECCC---CeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcE
Q 000685 166 SLVCMEFLSRSAVGDVPLVAFGS---SDGVIRVLSMIS---WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1352)
Q Consensus 166 ~V~~vaf~P~s~Spdg~~LasGs---~DGtIrIWDl~t---~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtV 239 (1352)
......|. +..+++.+ +++.+.+||..- ..++. ..|.+.+++++ +-|..++|+||+.+|.|
T Consensus 2294 ~~~Df~Fi-------~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~---~~H~~gaT~l~---~~P~~qllisggr~G~v 2360 (2439)
T KOG1064|consen 2294 ALSDFRFI-------GSLLATAGRSSDNRNVCLWDTLLPPMNSLVH---TCHDGGATVLA---YAPKHQLLISGGRKGEV 2360 (2439)
T ss_pred cccceeee-------ehhhhccccCCCCCcccchhcccCcccceee---eecCCCceEEE---EcCcceEEEecCCcCcE
Confidence 88888884 46677654 678999999753 23333 38999999998 78999999999999999
Q ss_pred EEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCce-e
Q 000685 240 ILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVAS-W 318 (1352)
Q Consensus 240 rVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V-~ 318 (1352)
++||++..+..+.| +. ++ ...++++|+..|.++||++.....++++.....-.+.-..+ .
T Consensus 2361 ~l~D~rqrql~h~~------~~---------~~----~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~ 2421 (2439)
T KOG1064|consen 2361 CLFDIRQRQLRHTF------QA---------LD----TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGM 2421 (2439)
T ss_pred EEeehHHHHHHHHh------hh---------hh----hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCc
Confidence 99999987755442 21 32 25799999999999999999887777764322111110000 2
Q ss_pred EEEeCCCCCEEEEecCC
Q 000685 319 CHPRAPNLDILTCVKDS 335 (1352)
Q Consensus 319 svafspdg~lLS~s~Dg 335 (1352)
.+-..+.+++.+|+.|+
T Consensus 2422 Q~~v~~~nrifsCgad~ 2438 (2439)
T KOG1064|consen 2422 QINVGQCNRIFSCGADG 2438 (2439)
T ss_pred eeeeccCceEEEecCCC
Confidence 34445566777887776
No 235
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=6.4e-08 Score=118.71 Aligned_cols=171 Identities=13% Similarity=0.047 Sum_probs=106.9
Q ss_pred eeeeeecCCCCeEEEEEecCc---EEEEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEEC-CCc--EEEE
Q 000685 123 FASPPPSTKGRHFLVICCVNK---AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS-DGV--IRVL 196 (1352)
Q Consensus 123 V~slafspdg~~lLasgs~D~---~I~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~-DGt--IrIW 196 (1352)
..++.|+|||+.++++.+.++ +.+||+.+++...+ ..+........| +|||++|+.+++ +|. |.++
T Consensus 250 ~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~l---t~~~~~~~~~~~-----spDG~~l~f~sd~~g~~~iy~~ 321 (433)
T PRK04922 250 NGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRL---TNHFGIDTEPTW-----APDGKSIYFTSDRGGRPQIYRV 321 (433)
T ss_pred ccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEEC---ccCCCCccceEE-----CCCCCEEEEEECCCCCceEEEE
Confidence 346789999986666655544 44668887764432 333344556788 789999888774 444 6667
Q ss_pred ECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCC---cEEEEeCCCCCccceecccccccccccceEEEEeec
Q 000685 197 SMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDG---LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSR 273 (1352)
Q Consensus 197 Dl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DG---tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp 273 (1352)
|+.+++... +. .+........ ++|+|+.|+..+.++ .|.+||+.+++.. . +. +........|+|
T Consensus 322 dl~~g~~~~-lt-~~g~~~~~~~---~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~------Lt-~~~~~~~p~~sp 388 (433)
T PRK04922 322 AASGGSAER-LT-FQGNYNARAS---VSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-T------LT-PGSLDESPSFAP 388 (433)
T ss_pred ECCCCCeEE-ee-cCCCCccCEE---ECCCCCEEEEEECCCCceeEEEEECCCCCeE-E------CC-CCCCCCCceECC
Confidence 777665433 32 2334444565 689999988765443 6999999877532 1 22 222345678999
Q ss_pred cCCCCCEEEEEECC---CcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCC
Q 000685 274 VMGGSPQLITIGAD---KTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAP 324 (1352)
Q Consensus 274 ~~~dg~~LaSgs~D---gtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafsp 324 (1352)
++++|+..+.+ +.|.+++... ...+. +..+...+...+|+|
T Consensus 389 ---dG~~i~~~s~~~g~~~L~~~~~~g-~~~~~------l~~~~g~~~~p~wsp 432 (433)
T PRK04922 389 ---NGSMVLYATREGGRGVLAAVSTDG-RVRQR------LVSADGEVREPAWSP 432 (433)
T ss_pred ---CCCEEEEEEecCCceEEEEEECCC-CceEE------cccCCCCCCCCccCC
Confidence 78887766653 4577888754 33343 233444555666765
No 236
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.92 E-value=2e-09 Score=123.80 Aligned_cols=226 Identities=14% Similarity=0.101 Sum_probs=167.2
Q ss_pred eeeeeecCCCCeEEEEEecCcEEEEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCe
Q 000685 123 FASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK 202 (1352)
Q Consensus 123 V~slafspdg~~lLasgs~D~~I~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~ 202 (1352)
-+.+.|+.+|+++|+.|..+.+--+|+.+++..+ ...-...|.++.|+ .+.++++++ ....+.|||- .|.
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~---Ei~v~Etv~Dv~~L-----Hneq~~AVA-QK~y~yvYD~-~Gt 201 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF---EINVMETVRDVTFL-----HNEQFFAVA-QKKYVYVYDN-NGT 201 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeee---eeehhhhhhhhhhh-----cchHHHHhh-hhceEEEecC-CCc
Confidence 3567889999977766666666688999886533 12235678899994 456777766 6778999994 466
Q ss_pred EEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEE
Q 000685 203 LVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLI 282 (1352)
Q Consensus 203 ~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~La 282 (1352)
.+..+. ....|..+. |-|.--+|++++..|.++.-|+.+|+.+.. +..-.+.+..++-+| -.-.+-
T Consensus 202 ElHClk--~~~~v~rLe---FLPyHfLL~~~~~~G~L~Y~DVS~GklVa~------~~t~~G~~~vm~qNP---~NaVih 267 (545)
T KOG1272|consen 202 ELHCLK--RHIRVARLE---FLPYHFLLVAASEAGFLKYQDVSTGKLVAS------IRTGAGRTDVMKQNP---YNAVIH 267 (545)
T ss_pred EEeehh--hcCchhhhc---ccchhheeeecccCCceEEEeechhhhhHH------HHccCCccchhhcCC---ccceEE
Confidence 666664 346777776 677778999999999999999999997765 344556677888888 466888
Q ss_pred EEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEE-EEecCCe--EEeccCCcccccccCccccCCCC
Q 000685 283 TIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLV 359 (1352)
Q Consensus 283 Sgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lL-S~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~ 359 (1352)
+|...|+|.+|.-.+.+.+-. +.+|.++|.++++.++|.++ +.|.|.. |||++...
T Consensus 268 ~GhsnGtVSlWSP~skePLvK------iLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~--------------- 326 (545)
T KOG1272|consen 268 LGHSNGTVSLWSPNSKEPLVK------ILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY--------------- 326 (545)
T ss_pred EcCCCceEEecCCCCcchHHH------HHhcCCCcceEEECCCCcEEeecccccceeEeeecccc---------------
Confidence 999999999999888776655 68999999999999999976 6788885 99998531
Q ss_pred CCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEec
Q 000685 360 PPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1352)
Q Consensus 360 ~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd 399 (1352)
...++.. ......+++|. ..+||+|..+.+ .+|.
T Consensus 327 ql~t~~t--p~~a~~ls~Sq--kglLA~~~G~~v--~iw~ 360 (545)
T KOG1272|consen 327 QLHTYRT--PHPASNLSLSQ--KGLLALSYGDHV--QIWK 360 (545)
T ss_pred ccceeec--CCCcccccccc--ccceeeecCCee--eeeh
Confidence 1122222 12456677776 445777776655 5784
No 237
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.92 E-value=9.2e-08 Score=104.33 Aligned_cols=153 Identities=18% Similarity=0.181 Sum_probs=106.3
Q ss_pred eeeeecCCCCeEEEEEecC------------cEEEEEeeCCcccccccccc-CCCCeEEEEEeeccccCCCCEEEEE--E
Q 000685 124 ASPPPSTKGRHFLVICCVN------------KAIFLDLVTMRGRDIPKQEL-DNKSLVCMEFLSRSAVGDVPLVAFG--S 188 (1352)
Q Consensus 124 ~slafspdg~~lLasgs~D------------~~I~wDl~t~~~~~i~~~~~-h~~~V~~vaf~P~s~Spdg~~LasG--s 188 (1352)
..+.|+++|+.+++....+ .+.+++..... +..... ..++|.+++| +|+|+.+++. .
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~---~~~i~l~~~~~I~~~~W-----sP~g~~favi~g~ 80 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP---VESIELKKEGPIHDVAW-----SPNGNEFAVIYGS 80 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc---cceeeccCCCceEEEEE-----CcCCCEEEEEEcc
Confidence 3567899998666655511 11122333222 222222 3457999999 7788886554 4
Q ss_pred CCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCC---CcEEEEeCCCCCccceecccccccccccc
Q 000685 189 SDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSD---GLLILWSADHGQDSRELVPKLSLKAHDGG 265 (1352)
Q Consensus 189 ~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~D---GtVrVWDl~tg~~~~~~~~~~~l~gH~~~ 265 (1352)
.++.|.+||++ ++.+..+ +...++.+. ++|+|++|++|+.+ |.|.+||.++.+.+.. ..| ..
T Consensus 81 ~~~~v~lyd~~-~~~i~~~---~~~~~n~i~---wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~-------~~~-~~ 145 (194)
T PF08662_consen 81 MPAKVTLYDVK-GKKIFSF---GTQPRNTIS---WSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIST-------FEH-SD 145 (194)
T ss_pred CCcccEEEcCc-ccEeEee---cCCCceEEE---ECCCCCEEEEEEccCCCcEEEEEECCCCEEeec-------ccc-Cc
Confidence 67899999997 5666655 345677886 69999999998754 6799999997765543 223 34
Q ss_pred eEEEEeeccCCCCCEEEEEEC------CCcEEEEECCCCeEEEE
Q 000685 266 VVAVELSRVMGGSPQLITIGA------DKTLAIWDTVSFKELRR 303 (1352)
Q Consensus 266 V~slafsp~~~dg~~LaSgs~------DgtV~IWDl~tg~~l~~ 303 (1352)
++.++|+| +|++|++++. |+.++||++. |+.+..
T Consensus 146 ~t~~~WsP---dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 146 ATDVEWSP---DGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EEEEEEcC---CCCEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence 78999999 8999998875 7889999985 666655
No 238
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.91 E-value=1.7e-07 Score=114.65 Aligned_cols=172 Identities=15% Similarity=0.031 Sum_probs=102.4
Q ss_pred eeeeeecCCCCeEEEEEecCcEE-EE--EeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEEC-CCcEEEEEC
Q 000685 123 FASPPPSTKGRHFLVICCVNKAI-FL--DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS-DGVIRVLSM 198 (1352)
Q Consensus 123 V~slafspdg~~lLasgs~D~~I-~w--Dl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~-DGtIrIWDl 198 (1352)
+.+..|+|||+.++++.+.++.. +| |..++..+. ...+........| +|||++|+..++ +|...||.+
T Consensus 242 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~---lt~~~~~~~~~~w-----SpDG~~l~f~s~~~g~~~Iy~~ 313 (427)
T PRK02889 242 NSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRR---LTQSSGIDTEPFF-----SPDGRSIYFTSDRGGAPQIYRM 313 (427)
T ss_pred ccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEE---CCCCCCCCcCeEE-----cCCCCEEEEEecCCCCcEEEEE
Confidence 34678999998565566666543 33 555544322 2334444566778 789998887664 466666654
Q ss_pred --CCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCC---cEEEEeCCCCCccceecccccccccccceEEEEeec
Q 000685 199 --ISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDG---LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSR 273 (1352)
Q Consensus 199 --~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DG---tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp 273 (1352)
.+++...... +........ ++|+|++|+..+.++ .|.+||+.+++... +.. ........|+|
T Consensus 314 ~~~~g~~~~lt~--~g~~~~~~~---~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-------lt~-~~~~~~p~~sp 380 (427)
T PRK02889 314 PASGGAAQRVTF--TGSYNTSPR---ISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-------LTD-TTRDESPSFAP 380 (427)
T ss_pred ECCCCceEEEec--CCCCcCceE---ECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-------ccC-CCCccCceECC
Confidence 4444322222 223334454 699999998877654 59999998875321 111 12346789999
Q ss_pred cCCCCCEEEEEECCC-c--EEEEECCCCeEEEEecCCCcccccCCceeEEEeCCC
Q 000685 274 VMGGSPQLITIGADK-T--LAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPN 325 (1352)
Q Consensus 274 ~~~dg~~LaSgs~Dg-t--V~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspd 325 (1352)
++++|+.++.++ . +.+.+. +|...+. +..+.+.+...+|+|-
T Consensus 381 ---dg~~l~~~~~~~g~~~l~~~~~-~g~~~~~------l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 381 ---NGRYILYATQQGGRSVLAAVSS-DGRIKQR------LSVQGGDVREPSWGPF 425 (427)
T ss_pred ---CCCEEEEEEecCCCEEEEEEEC-CCCceEE------eecCCCCCCCCccCCC
Confidence 788877776543 2 445555 3444333 2334455556667663
No 239
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.90 E-value=2.9e-07 Score=113.07 Aligned_cols=204 Identities=14% Similarity=0.063 Sum_probs=129.4
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCcccc
Q 000685 5 KAFRPTNDKIVKIQLHPTHPWLVTADA---SDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEA 81 (1352)
Q Consensus 5 ~~L~gHs~~V~~lafSPdg~~LaTgs~---DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~ 81 (1352)
+.+..|...|.+.+|||||++|+..+. +..|.+||+.+|+... +.
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~------------------------------- 242 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VG------------------------------- 242 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-ee-------------------------------
Confidence 456677778888888888887777653 3567777776654321 11
Q ss_pred ccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCc---EEEEEeeCCcccccc
Q 000685 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNK---AIFLDLVTMRGRDIP 158 (1352)
Q Consensus 82 l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~---~I~wDl~t~~~~~i~ 158 (1352)
.+...+.+..|+|||+.++++.+.++ +.++|..++....+
T Consensus 243 ------------------------------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~L- 285 (435)
T PRK05137 243 ------------------------------------NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRL- 285 (435)
T ss_pred ------------------------------------cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEc-
Confidence 00223456789999986666666544 33558877654332
Q ss_pred ccccCCCCeEEEEEeeccccCCCCEEEEEEC-CC--cEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeC
Q 000685 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSS-DG--VIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS 235 (1352)
Q Consensus 159 ~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~-DG--tIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~ 235 (1352)
..+.....+..| +|||++|+..+. +| .|.+||+.+++.. .+. .+...+.... ++|+|+.|+..+.
T Consensus 286 --t~~~~~~~~~~~-----spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt-~~~~~~~~~~---~SpdG~~ia~~~~ 353 (435)
T PRK05137 286 --TDSPAIDTSPSY-----SPDGSQIVFESDRSGSPQLYVMNADGSNPR-RIS-FGGGRYSTPV---WSPRGDLIAFTKQ 353 (435)
T ss_pred --cCCCCccCceeE-----cCCCCEEEEEECCCCCCeEEEEECCCCCeE-Eee-cCCCcccCeE---ECCCCCEEEEEEc
Confidence 334445667888 789999888774 33 5888888766553 343 2344555565 6899999987765
Q ss_pred C---CcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECC------CcEEEEECCCCeE
Q 000685 236 D---GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGAD------KTLAIWDTVSFKE 300 (1352)
Q Consensus 236 D---GtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~D------gtV~IWDl~tg~~ 300 (1352)
+ ..|.+||+.++.. .. +. +...+....|+| |+++|+..+.+ ..+.++|+..+..
T Consensus 354 ~~~~~~i~~~d~~~~~~-~~------lt-~~~~~~~p~~sp---DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 354 GGGQFSIGVMKPDGSGE-RI------LT-SGFLVEGPTWAP---NGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred CCCceEEEEEECCCCce-Ee------cc-CCCCCCCCeECC---CCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 4 3588888765432 21 11 122466789999 78877765543 2577888765543
No 240
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.88 E-value=5.3e-07 Score=107.87 Aligned_cols=322 Identities=13% Similarity=0.079 Sum_probs=177.0
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEEeccCcc-ceEEeccccceeEecccccCCCccccccCCceEEEEEcCCeEEEEEcCC
Q 000685 26 LVTADASDHVSVWNWEHRQVIYELKAGGVD-QRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWR 104 (1352)
Q Consensus 26 LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~-~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~sVaF~Dg~IrlWDl~t 104 (1352)
+++-..+|.|.|.|..+.+.+.++..++.- .....++|++++...+ .|+.|.++|+.+
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~---------------------rdg~vsviD~~~ 67 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVAN---------------------RDGTVSVIDLAT 67 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEE---------------------TTSEEEEEETTS
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEc---------------------CCCeEEEEECCc
Confidence 345567899999999999999999865432 2334568999887764 588999999999
Q ss_pred ccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCcccc-cccccc----CCCCeEEEEEeecccc
Q 000685 105 NRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRD-IPKQEL----DNKSLVCMEFLSRSAV 178 (1352)
Q Consensus 105 ~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~-i~~~~~----h~~~V~~vaf~P~s~S 178 (1352)
.+.+.. ... .....++++++||+.+++++...+.+ ++|..+.+... +..... ....+..|.. +
T Consensus 68 ~~~v~~---i~~---G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~-----s 136 (369)
T PF02239_consen 68 GKVVAT---IKV---GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVA-----S 136 (369)
T ss_dssp SSEEEE---EE----SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE------
T ss_pred ccEEEE---Eec---CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEe-----c
Confidence 986531 111 33467899999999666666667766 55988875432 111111 2346667776 5
Q ss_pred CCCCEEEEEE-CCCcEEEEECCCCeEEE-EEecCCCCCeeEEEEeeeCCCCCEEEEE-eCCCcEEEEeCCCCCccceecc
Q 000685 179 GDVPLVAFGS-SDGVIRVLSMISWKLVR-RYTGGHKGSISCLMTFMASSGEALLVSG-GSDGLLILWSADHGQDSRELVP 255 (1352)
Q Consensus 179 pdg~~LasGs-~DGtIrIWDl~t~~~i~-~l~~gH~~~V~slawf~~s~dg~~LaSg-S~DGtVrVWDl~tg~~~~~~~~ 255 (1352)
+....++..- +.+.|.+.|....+.+. +.. .......... +++++++++.+ ..++.|-++|..+++....+..
T Consensus 137 ~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i-~~g~~~~D~~---~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~ 212 (369)
T PF02239_consen 137 PGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTI-KVGRFPHDGG---FDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDT 212 (369)
T ss_dssp SSSSEEEEEETTTTEEEEEETTTSSCEEEEEE-E--TTEEEEE---E-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-
T ss_pred CCCCEEEEEEccCCeEEEEEeccccccceeee-cccccccccc---cCcccceeeecccccceeEEEeeccceEEEEeec
Confidence 6677555554 45888888877654332 222 2344555554 78999877654 5677999999988765443210
Q ss_pred cccccccccceEEE-------EeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCE
Q 000685 256 KLSLKAHDGGVVAV-------ELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDI 328 (1352)
Q Consensus 256 ~~~l~gH~~~V~sl-------afsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~l 328 (1352)
--..|..++..+ .|...+ .+...++.-....+.+||..+++.++++ ...... ..+..||++++
T Consensus 213 --g~~p~~~~~~~~php~~g~vw~~~~-~~~~~~~~ig~~~v~v~d~~~wkvv~~I------~~~G~g-lFi~thP~s~~ 282 (369)
T PF02239_consen 213 --GKKPHPGPGANFPHPGFGPVWATSG-LGYFAIPLIGTDPVSVHDDYAWKVVKTI------PTQGGG-LFIKTHPDSRY 282 (369)
T ss_dssp --SSSBEETTEEEEEETTTEEEEEEEB-SSSSEEEEEE--TTT-STTTBTSEEEEE------E-SSSS---EE--TT-SE
T ss_pred --cccccccccccccCCCcceEEeecc-ccceecccccCCccccchhhcCeEEEEE------ECCCCc-ceeecCCCCcc
Confidence 012233332221 122111 2233333333346678999999998885 333444 47888999997
Q ss_pred EEEe----cC-Ce--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCC-eEEEEecC
Q 000685 329 LTCV----KD-SH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVG-VIISEFDP 400 (1352)
Q Consensus 329 LS~s----~D-g~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG-~IlriWd~ 400 (1352)
+-.. .+ .. |+|..+... ...+......++..+.|++++..+.++.-+.+ .| .++|.
T Consensus 283 vwvd~~~~~~~~~v~viD~~tl~~---------------~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i-~v~D~ 346 (369)
T PF02239_consen 283 VWVDTFLNPDADTVQVIDKKTLKV---------------VKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAI-VVYDA 346 (369)
T ss_dssp EEEE-TT-SSHT-EEEEECCGTEE---------------EE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEE-EEEET
T ss_pred EEeeccCCCCCceEEEEECcCcce---------------eEEEeccCCCcEeccEECCCCCEEEEEEecCCCEE-EEEEC
Confidence 7332 33 22 678775311 11222112225889999996655555544444 66 59998
Q ss_pred CCCCCcccc
Q 000685 401 RSLPAVAPL 409 (1352)
Q Consensus 401 ~~~p~i~~l 409 (1352)
.+......+
T Consensus 347 ~Tl~~~~~i 355 (369)
T PF02239_consen 347 KTLKEKKRI 355 (369)
T ss_dssp TTTEEEEEE
T ss_pred CCcEEEEEE
Confidence 876544433
No 241
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.86 E-value=2.9e-07 Score=112.75 Aligned_cols=204 Identities=12% Similarity=0.098 Sum_probs=125.6
Q ss_pred CeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEec--C-cEEEEEeeCCccccccccccCCCCeEEEE
Q 000685 95 DDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCV--N-KAIFLDLVTMRGRDIPKQELDNKSLVCME 171 (1352)
Q Consensus 95 g~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~--D-~~I~wDl~t~~~~~i~~~~~h~~~V~~va 171 (1352)
..|.+||....... .... ....+.+.+|+|||+.++.+... + .+.++|+.+++.+.+.... ..+....
T Consensus 179 ~~l~~~d~dg~~~~-----~lt~-~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~---~~~~~~~ 249 (429)
T PRK03629 179 YELRVSDYDGYNQF-----VVHR-SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP---RHNGAPA 249 (429)
T ss_pred eeEEEEcCCCCCCE-----Eeec-CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC---CCcCCeE
Confidence 36888887765332 1112 24568899999999844433322 2 2335688877654443322 2344678
Q ss_pred EeeccccCCCCEEEEE-ECCC--cEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCC-CcEEEE--eCC
Q 000685 172 FLSRSAVGDVPLVAFG-SSDG--VIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSD-GLLILW--SAD 245 (1352)
Q Consensus 172 f~P~s~Spdg~~LasG-s~DG--tIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~D-GtVrVW--Dl~ 245 (1352)
| +|||+.|+.. +.+| .|.+||+.+++..+ +. .+...+.... ++|+|+.|+..+.+ +...+| |+.
T Consensus 250 ~-----SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt-~~~~~~~~~~---wSPDG~~I~f~s~~~g~~~Iy~~d~~ 319 (429)
T PRK03629 250 F-----SPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VT-DGRSNNTEPT---WFPDSQNLAYTSDQAGRPQVYKVNIN 319 (429)
T ss_pred E-----CCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-cc-CCCCCcCceE---ECCCCCEEEEEeCCCCCceEEEEECC
Confidence 8 7899988765 4455 58899998877644 33 3444566665 69999988777654 444555 666
Q ss_pred CCCccceecccccccccccceEEEEeeccCCCCCEEEEEECC---CcEEEEECCCCeEEEEecCCCcccccCCceeEEEe
Q 000685 246 HGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGAD---KTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPR 322 (1352)
Q Consensus 246 tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~D---gtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svaf 322 (1352)
++.. .. +..+........|+| ++++|+..+.+ ..|.+||+.+++. +.+.. .+ ......|
T Consensus 320 ~g~~-~~------lt~~~~~~~~~~~Sp---DG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~-----~~--~~~~p~~ 381 (429)
T PRK03629 320 GGAP-QR------ITWEGSQNQDADVSS---DGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTD-----TF--LDETPSI 381 (429)
T ss_pred CCCe-EE------eecCCCCccCEEECC---CCCEEEEEEccCCCceEEEEECCCCCe-EEeCC-----CC--CCCCceE
Confidence 5542 11 222333456788999 78888776543 3588899988764 33211 11 1235789
Q ss_pred CCCCCEE-EEecCC
Q 000685 323 APNLDIL-TCVKDS 335 (1352)
Q Consensus 323 spdg~lL-S~s~Dg 335 (1352)
+|||+.| ..+.++
T Consensus 382 SpDG~~i~~~s~~~ 395 (429)
T PRK03629 382 APNGTMVIYSSSQG 395 (429)
T ss_pred CCCCCEEEEEEcCC
Confidence 9999966 455554
No 242
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.84 E-value=1.9e-07 Score=102.76 Aligned_cols=270 Identities=17% Similarity=0.142 Sum_probs=161.9
Q ss_pred CCeEEEEEcCCccccccccccccccCCCCeeeeeecC---CCCeEEEEEecCcEE-EE--Ee--eCCccccccccccCCC
Q 000685 94 DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPST---KGRHFLVICCVNKAI-FL--DL--VTMRGRDIPKQELDNK 165 (1352)
Q Consensus 94 Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafsp---dg~~lLasgs~D~~I-~w--Dl--~t~~~~~i~~~~~h~~ 165 (1352)
-|.+.++++...+... .........+.+..+.|+. ++...++-.-..+.+ .+ +. .....+.+........
T Consensus 45 ~Gkl~Lys~~d~~~~~--l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~ 122 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSP--LDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVV 122 (339)
T ss_pred ccceEEEeecccccCc--cceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhe
Confidence 4677778777765543 1122222234455555542 343233444444444 33 11 1111111111111122
Q ss_pred CeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEE--EEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEe
Q 000685 166 SLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVR--RYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243 (1352)
Q Consensus 166 ~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~--~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWD 243 (1352)
.-.++.| ++.+..++++-.+|.+.+-+........ ... +|.-...... +...+.+++.+|+.|+.+..||
T Consensus 123 ~~lslD~-----~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk-~He~E~Wta~--f~~~~pnlvytGgDD~~l~~~D 194 (339)
T KOG0280|consen 123 EALSLDI-----STSGTKIFVSDSRGSISGVYETEMVLEKVQTWK-VHEFEAWTAK--FSDKEPNLVYTGGDDGSLSCWD 194 (339)
T ss_pred eeeEEEe-----eccCceEEEEcCCCcEEEEecceeeeeeccccc-ccceeeeeee--cccCCCceEEecCCCceEEEEE
Confidence 3456788 6677789999999999976655544333 554 8888887776 2455678999999999999999
Q ss_pred CCCC-CccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCC-CeEEEEecCCCcccccCCceeEEE
Q 000685 244 ADHG-QDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVS-FKELRRIKPVPKLACHSVASWCHP 321 (1352)
Q Consensus 244 l~tg-~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~t-g~~l~~~~~~~~l~~hs~~V~sva 321 (1352)
++.. +.+.. ..+-|..+|.++.-+| ..+.+|+||+.|-.|++||.++ ++++.. ..-.+.||.+.
T Consensus 195 ~R~p~~~i~~-----n~kvH~~GV~SI~ss~--~~~~~I~TGsYDe~i~~~DtRnm~kPl~~-------~~v~GGVWRi~ 260 (339)
T KOG0280|consen 195 IRIPKTFIWH-----NSKVHTSGVVSIYSSP--PKPTYIATGSYDECIRVLDTRNMGKPLFK-------AKVGGGVWRIK 260 (339)
T ss_pred ecCCcceeee-----cceeeecceEEEecCC--CCCceEEEeccccceeeeehhcccCcccc-------CccccceEEEE
Confidence 9933 22211 1356899999999998 4788999999999999999984 555543 23348899999
Q ss_pred eCCCCC--EE-EEecCC-eEEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEE-CCCeEEE
Q 000685 322 RAPNLD--IL-TCVKDS-HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGT-NVGVIIS 396 (1352)
Q Consensus 322 fspdg~--lL-S~s~Dg-~IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs-~DG~Ilr 396 (1352)
.+|.-. ++ +|-..| +|-+.+..... . .........|.+ -.+.-.|... ..++||++ .|..++.
T Consensus 261 ~~p~~~~~lL~~CMh~G~ki~~~~~~~~e--------~--~~~~~s~~~hdS-l~YG~DWd~~-~~~lATCsFYDk~~~~ 328 (339)
T KOG0280|consen 261 HHPEIFHRLLAACMHNGAKILDSSDKVLE--------F--QIVLPSDKIHDS-LCYGGDWDSK-DSFLATCSFYDKKIRQ 328 (339)
T ss_pred ecchhhhHHHHHHHhcCceEEEecccccc--------h--heeeeccccccc-eeeccccccc-cceeeeeeccccceee
Confidence 999744 44 455566 47776643210 0 001123344444 5677777553 44577754 3555434
Q ss_pred Eec
Q 000685 397 EFD 399 (1352)
Q Consensus 397 iWd 399 (1352)
+|-
T Consensus 329 ~Wl 331 (339)
T KOG0280|consen 329 LWL 331 (339)
T ss_pred eee
Confidence 663
No 243
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.81 E-value=2.3e-07 Score=109.42 Aligned_cols=252 Identities=13% Similarity=0.096 Sum_probs=163.1
Q ss_pred CCCeeeeeecCCCCeEEEEEecCcEEE-EEeeCCccccccccccC-CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEE
Q 000685 120 TSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPKQELD-NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLS 197 (1352)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~D~~I~-wDl~t~~~~~i~~~~~h-~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWD 197 (1352)
....+.|..+|||+.++++|...-.|. +|+.....+ +..| ...+..+..+ +.|-..++.-..|.+|.+..
T Consensus 51 p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK----FERhlDae~V~feiL----sDD~SK~v~L~~DR~IefHa 122 (703)
T KOG2321|consen 51 PTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK----FERHLDAEVVDFEIL----SDDYSKSVFLQNDRTIEFHA 122 (703)
T ss_pred ccccceeEecCCCcEEEEecccCCceEEEEcccceee----eeecccccceeEEEe----ccchhhheEeecCceeeehh
Confidence 455678889999998899998887774 488765432 2333 3334333332 44555566666788887654
Q ss_pred CCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCC
Q 000685 198 MISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGG 277 (1352)
Q Consensus 198 l~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~d 277 (1352)
.- |.....-. . ..-..++ ...+...+ .+++....|.-+++..|..+.. +....++++++..++ .
T Consensus 123 k~-G~hy~~RI-P--~~GRDm~--y~~~scDl-y~~gsg~evYRlNLEqGrfL~P------~~~~~~~lN~v~in~---~ 186 (703)
T KOG2321|consen 123 KY-GRHYRTRI-P--KFGRDMK--YHKPSCDL-YLVGSGSEVYRLNLEQGRFLNP------FETDSGELNVVSINE---E 186 (703)
T ss_pred hc-Ceeeeeec-C--cCCcccc--ccCCCccE-EEeecCcceEEEEccccccccc------cccccccceeeeecC---c
Confidence 32 22211111 1 1222333 12333444 4445566788899999987654 455567899999998 5
Q ss_pred CCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCc-----eeEEEeCCCCCEE-EEecCCe--EEeccCCcccccc
Q 000685 278 SPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVA-----SWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALT 349 (1352)
Q Consensus 278 g~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~-----V~svafspdg~lL-S~s~Dg~--IWDi~t~~~~~~~ 349 (1352)
..+|++|+.||.|.+||.++...+.++........|... |+++.|+.+|--+ +|..+|. |||++...
T Consensus 187 hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~----- 261 (703)
T KOG2321|consen 187 HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK----- 261 (703)
T ss_pred cceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC-----
Confidence 678999999999999999988877777665555555544 9999999988766 5668885 79998642
Q ss_pred cCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCCCCCccccCC
Q 000685 350 RPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPLPT 411 (1352)
Q Consensus 350 ~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~i~~l~~ 411 (1352)
++..-......+|..+.|.+.+.. =..-+.|..++++||..+..+...+..
T Consensus 262 ----------pl~~kdh~~e~pi~~l~~~~~~~q-~~v~S~Dk~~~kiWd~~~Gk~~asiEp 312 (703)
T KOG2321|consen 262 ----------PLLVKDHGYELPIKKLDWQDTDQQ-NKVVSMDKRILKIWDECTGKPMASIEP 312 (703)
T ss_pred ----------ceeecccCCccceeeecccccCCC-ceEEecchHHhhhcccccCCceeeccc
Confidence 222222223347888999875333 333445666679999888777666543
No 244
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.79 E-value=2.1e-07 Score=104.05 Aligned_cols=269 Identities=14% Similarity=0.163 Sum_probs=153.6
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----EEEEEeccCccceEEeccccceeEecccccCCCccccccC-
Q 000685 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQ-----VIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG- 84 (1352)
Q Consensus 11 s~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~-----~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~- 84 (1352)
.+-|.++.|..+|.+|+||+.+|.|.++.-.... ...+++.|. |.-.+|-+........-++-+..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshe--------pEFDYLkSleieEKinkIrw~~~~ 96 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHE--------PEFDYLKSLEIEEKINKIRWLDDG 96 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccC--------cccchhhhhhhhhhhhhceecCCC
Confidence 3568999999999999999999999999743221 122232221 22223322221111111111111
Q ss_pred -CceEEEEEcCCeEEEEEcCCccccc-------------------------------cccccccccCCCCeeeeeecCCC
Q 000685 85 -GSVKQVNFYDDDVRFWQLWRNRAAA-------------------------------AEAPTAVSNVTSGFASPPPSTKG 132 (1352)
Q Consensus 85 -g~V~sVaF~Dg~IrlWDl~t~~~i~-------------------------------~~~~~~~~~~~~~V~slafspdg 132 (1352)
....-+.-.|.+|++|.+....... .........|+.-|+++.++.|.
T Consensus 97 n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~ 176 (433)
T KOG1354|consen 97 NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK 176 (433)
T ss_pred CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc
Confidence 1111111178999999876543221 00112223346678899999999
Q ss_pred CeEEEEEecCcEEEEEeeCCc-cccccccccC-----CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEE--
Q 000685 133 RHFLVICCVNKAIFLDLVTMR-GRDIPKQELD-----NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLV-- 204 (1352)
Q Consensus 133 ~~lLasgs~D~~I~wDl~t~~-~~~i~~~~~h-----~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i-- 204 (1352)
. .+.++.+=++-.|++.-.. +-.+.-.+.+ ..-|++..|||. ..++++..++.|+|++-|++...+.
T Consensus 177 E-t~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~----~cn~f~YSSSKGtIrLcDmR~~aLCd~ 251 (433)
T KOG1354|consen 177 E-TFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPH----HCNVFVYSSSKGTIRLCDMRQSALCDA 251 (433)
T ss_pred c-eEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHh----HccEEEEecCCCcEEEeechhhhhhcc
Confidence 7 6666665555577553211 1111111222 346888999873 4678899999999999999843211
Q ss_pred --EEEe-----------cCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCC-CCccceecccccccc------ccc
Q 000685 205 --RRYT-----------GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH-GQDSRELVPKLSLKA------HDG 264 (1352)
Q Consensus 205 --~~l~-----------~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~t-g~~~~~~~~~~~l~g------H~~ 264 (1352)
+.+. .+--..|..+. |+.+|+++++-+. -+|++||+.. .+.+.++.....+.. ..+
T Consensus 252 hsKlfEepedp~~rsffseiIsSISDvK---Fs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD 327 (433)
T KOG1354|consen 252 HSKLFEEPEDPSSRSFFSEIISSISDVK---FSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYEND 327 (433)
T ss_pred hhhhhccccCCcchhhHHHHhhhhhceE---EccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhcc
Confidence 1111 01123455555 8999999997442 6899999953 332222110000000 112
Q ss_pred ce---EEEEeeccCCCCCEEEEEECCCcEEEEECCCCe
Q 000685 265 GV---VAVELSRVMGGSPQLITIGADKTLAIWDTVSFK 299 (1352)
Q Consensus 265 ~V---~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~ 299 (1352)
.| ..++|+- ++.+++|||....+++|+...|.
T Consensus 328 ~IfdKFec~~sg---~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 328 AIFDKFECSWSG---NDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred chhheeEEEEcC---CcceEecccccceEEEecCCCCc
Confidence 22 3467775 77899999999999999977664
No 245
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.78 E-value=5.3e-07 Score=110.65 Aligned_cols=197 Identities=17% Similarity=0.090 Sum_probs=123.3
Q ss_pred CeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecC----cEEEEEeeCCccccccccccCCCCeEEE
Q 000685 95 DDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVN----KAIFLDLVTMRGRDIPKQELDNKSLVCM 170 (1352)
Q Consensus 95 g~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D----~~I~wDl~t~~~~~i~~~~~h~~~V~~v 170 (1352)
..|.+||....... ....+ ...+.+..|+|||+ .|+..+.+ .+.+||+.+++...+. .......+.
T Consensus 184 ~~l~i~D~~g~~~~-----~lt~~-~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~~~l~---~~~g~~~~~ 253 (433)
T PRK04922 184 YALQVADSDGYNPQ-----TILRS-AEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQRELVA---SFRGINGAP 253 (433)
T ss_pred EEEEEECCCCCCce-----EeecC-CCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCEEEec---cCCCCccCc
Confidence 46888887644221 12222 55688999999998 55544422 2446788877654432 223344567
Q ss_pred EEeeccccCCCCEEE-EEECCC--cEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeC-CCc--EEEEeC
Q 000685 171 EFLSRSAVGDVPLVA-FGSSDG--VIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS-DGL--LILWSA 244 (1352)
Q Consensus 171 af~P~s~Spdg~~La-sGs~DG--tIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~-DGt--VrVWDl 244 (1352)
.| +|+|+.|+ +.+.+| .|.+||+.+++.. .+. .|.......+ ++++|+.|+.++. +|. |.++|+
T Consensus 254 ~~-----SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt-~~~~~~~~~~---~spDG~~l~f~sd~~g~~~iy~~dl 323 (433)
T PRK04922 254 SF-----SPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLT-NHFGIDTEPT---WAPDGKSIYFTSDRGGRPQIYRVAA 323 (433)
T ss_pred eE-----CCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECc-cCCCCccceE---ECCCCCEEEEEECCCCCceEEEEEC
Confidence 88 78998775 445555 5999999887754 343 4544455565 6899998887764 444 666676
Q ss_pred CCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCC---cEEEEECCCCeEEEEecCCCcccccCCceeEEE
Q 000685 245 DHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADK---TLAIWDTVSFKELRRIKPVPKLACHSVASWCHP 321 (1352)
Q Consensus 245 ~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~Dg---tV~IWDl~tg~~l~~~~~~~~l~~hs~~V~sva 321 (1352)
.+++... +..+.......+|+| ++++|+..+.++ .|.+||+.+++.. .+ . +........
T Consensus 324 ~~g~~~~-------lt~~g~~~~~~~~Sp---DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~L------t-~~~~~~~p~ 385 (433)
T PRK04922 324 SGGSAER-------LTFQGNYNARASVSP---DGKKIAMVHGSGGQYRIAVMDLSTGSVR-TL------T-PGSLDESPS 385 (433)
T ss_pred CCCCeEE-------eecCCCCccCEEECC---CCCEEEEEECCCCceeEEEEECCCCCeE-EC------C-CCCCCCCce
Confidence 6654321 111223345689999 788887665433 6999999887643 32 1 111233578
Q ss_pred eCCCCCEE
Q 000685 322 RAPNLDIL 329 (1352)
Q Consensus 322 fspdg~lL 329 (1352)
|+|||+.+
T Consensus 386 ~spdG~~i 393 (433)
T PRK04922 386 FAPNGSMV 393 (433)
T ss_pred ECCCCCEE
Confidence 99999965
No 246
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.75 E-value=8.1e-08 Score=107.25 Aligned_cols=255 Identities=11% Similarity=0.101 Sum_probs=161.9
Q ss_pred CCCeeeeeecCCCCeEEEEEecCcEEEE--EeeCCc--cccccccccC------------CCCeEEEEEeeccccCCCCE
Q 000685 120 TSGFASPPPSTKGRHFLVICCVNKAIFL--DLVTMR--GRDIPKQELD------------NKSLVCMEFLSRSAVGDVPL 183 (1352)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~D~~I~w--Dl~t~~--~~~i~~~~~h------------~~~V~~vaf~P~s~Spdg~~ 183 (1352)
...+.++.|...|. +|++|..+|.+++ +-+..+ ......++.| ...|..+.|++ ..+...
T Consensus 25 adiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~---~~n~a~ 100 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLD---DGNLAE 100 (433)
T ss_pred hcceeeEEeecccc-eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecC---CCCccE
Confidence 34688999999998 9999999998866 222221 1111112222 34688899975 234567
Q ss_pred EEEEECCCcEEEEECCCC-----------------------------------eEEEEEecCCCCCeeEEEEeeeCCCCC
Q 000685 184 VAFGSSDGVIRVLSMISW-----------------------------------KLVRRYTGGHKGSISCLMTFMASSGEA 228 (1352)
Q Consensus 184 LasGs~DGtIrIWDl~t~-----------------------------------~~i~~l~~gH~~~V~slawf~~s~dg~ 228 (1352)
++..+.|.+|++|.+... .+.+.+..+|.-.|+++. ++.|+.
T Consensus 101 FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS---~NsD~E 177 (433)
T KOG1354|consen 101 FLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSIS---VNSDKE 177 (433)
T ss_pred EEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeee---ecCccc
Confidence 788889999999987421 122333457888899997 788888
Q ss_pred EEEEEeCCCcEEEEeCCCCCccceeccc--ccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCe-EE---E
Q 000685 229 LLVSGGSDGLLILWSADHGQDSRELVPK--LSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK-EL---R 302 (1352)
Q Consensus 229 ~LaSgS~DGtVrVWDl~tg~~~~~~~~~--~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~-~l---~ 302 (1352)
.++|+ .|=.|.+|++.-......++.. ..+..-..-|++..|||. ..+.++-.+..|+|++.|++... |. .
T Consensus 178 t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~--~cn~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 178 TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPH--HCNVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHh--HccEEEEecCCCcEEEeechhhhhhcchhh
Confidence 88874 6889999998754332221110 112223356899999994 67889999999999999998432 11 1
Q ss_pred EecCCCc------ccccCCceeEEEeCCCCCEEEE-ecC-CeEEeccCCcccccccCccccCCCCCCeEEecCC------
Q 000685 303 RIKPVPK------LACHSVASWCHPRAPNLDILTC-VKD-SHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHK------ 368 (1352)
Q Consensus 303 ~~~~~~~------l~~hs~~V~svafspdg~lLS~-s~D-g~IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~------ 368 (1352)
.|..... +..--..|..+.|+++|+++.. ..- -+|||++... .|+.++..|.
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~--------------~pv~t~~vh~~lr~kL 320 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEA--------------KPVETYPVHEYLRSKL 320 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccC--------------CcceEEeehHhHHHHH
Confidence 1111110 1222346788999999997743 322 2599996432 2223332222
Q ss_pred ------c--ccEEEEEEecCCCcEEEEEECCCeEEEEecC
Q 000685 369 ------K--LRVYCMVAHSLQPHLVATGTNVGVIISEFDP 400 (1352)
Q Consensus 369 ------~--~~V~~la~sp~~~~lLatGs~DG~IlriWd~ 400 (1352)
+ ..-..++|+. ++..+.||+..+.+ ++++.
T Consensus 321 c~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~f-rvf~~ 358 (433)
T KOG1354|consen 321 CSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVF-RVFNL 358 (433)
T ss_pred HHHhhccchhheeEEEEcC-CcceEecccccceE-EEecC
Confidence 1 1124567887 45679999999986 88873
No 247
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.72 E-value=3.8e-07 Score=108.78 Aligned_cols=212 Identities=11% Similarity=0.158 Sum_probs=147.7
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCCceEEEEEcCCeEEE
Q 000685 20 HPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRF 99 (1352)
Q Consensus 20 SPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~sVaF~Dg~Irl 99 (1352)
.|-+.++|....||.+||||..+++...+|.....- .| .++-..
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~----------------------------s~--------t~~~~~ 45 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASL----------------------------SG--------TCTYTK 45 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhc----------------------------cC--------cceeEE
Confidence 345679999999999999999999988888632100 01 122233
Q ss_pred EEcCCccccccccccccccCCCCeeeeee---cCCCCeEEEEEecCcEEEE-EeeCCccccccccccCCCCeEEEEEeec
Q 000685 100 WQLWRNRAAAAEAPTAVSNVTSGFASPPP---STKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDNKSLVCMEFLSR 175 (1352)
Q Consensus 100 WDl~t~~~i~~~~~~~~~~~~~~V~slaf---spdg~~lLasgs~D~~I~w-Dl~t~~~~~i~~~~~h~~~V~~vaf~P~ 175 (1352)
|.+.-..... ...++.+ ...+...++-|...|.+.. +...++.........|.+.|.++.+
T Consensus 46 w~L~~~~s~~------------k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~--- 110 (541)
T KOG4547|consen 46 WGLSADYSPM------------KWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILD--- 110 (541)
T ss_pred EEEEeccchH------------HHHhHHHHhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeec---
Confidence 3322111000 0011111 0122336777777777744 7777765554445778999999999
Q ss_pred cccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecc
Q 000685 176 SAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVP 255 (1352)
Q Consensus 176 s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~ 255 (1352)
+.+-..|.+++.|+.+..|+....+.++... +....+.+++ .++|+..+++++ ++|++||+++++.+..
T Consensus 111 --~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~-~~~~~~~sl~---is~D~~~l~~as--~~ik~~~~~~kevv~~--- 179 (541)
T KOG4547|consen 111 --AQRLGCIYSVGADLKVVYILEKEKVIIRIWK-EQKPLVSSLC---ISPDGKILLTAS--RQIKVLDIETKEVVIT--- 179 (541)
T ss_pred --ccccCceEecCCceeEEEEecccceeeeeec-cCCCccceEE---EcCCCCEEEecc--ceEEEEEccCceEEEE---
Confidence 5567789999999999999999999988887 7788888887 899999999876 7899999999987765
Q ss_pred cccccccccceEEEEeeccC-C-CCCEEE-EEECCCcEEEEECC
Q 000685 256 KLSLKAHDGGVVAVELSRVM-G-GSPQLI-TIGADKTLAIWDTV 296 (1352)
Q Consensus 256 ~~~l~gH~~~V~slafsp~~-~-dg~~La-Sgs~DgtV~IWDl~ 296 (1352)
+.||.++|.++.|--.. + .|.+++ +...+.-+.+|-+.
T Consensus 180 ---ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 180 ---FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred ---ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 79999999999998720 0 134444 44456667777654
No 248
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=4.2e-08 Score=113.85 Aligned_cols=287 Identities=15% Similarity=0.192 Sum_probs=177.6
Q ss_pred eeeEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CcEEEEEeccCccceEEec--cccceeEeccc
Q 000685 2 LRLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEH-------RQVIYELKAGGVDQRRLVG--AKLEKLAEGEL 72 (1352)
Q Consensus 2 L~l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~t-------g~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~ 72 (1352)
+++..|.||.+.|..++--.+.+-+++++.|.+|++|.+.. ..|..+++.| ...+..+. .+.+++++
T Consensus 726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aH-kk~i~~igfL~~lr~i~S--- 801 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAH-KKPIHDIGFLADLRSIAS--- 801 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhc-cCcccceeeeeccceeee---
Confidence 57889999999999998877888899999999999999862 2355555533 33333333 45555555
Q ss_pred ccCCCccccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEE-EeeC
Q 000685 73 EHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVT 151 (1352)
Q Consensus 73 d~~g~~l~~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~w-Dl~t 151 (1352)
.|+.|.+||.-.++.+..............|.|+.- -+...+++.|+...++.+ |.+.
T Consensus 802 --------------------cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRs 860 (1034)
T KOG4190|consen 802 --------------------CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARS 860 (1034)
T ss_pred --------------------ccCcceeecccccchhHhhhcCcccCCCceeEeccc-Ccchheeeeccchhhheeeeccc
Confidence 489999999888877642222222221334444432 234434444466667744 7766
Q ss_pred Cccc---cccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCC
Q 000685 152 MRGR---DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEA 228 (1352)
Q Consensus 152 ~~~~---~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~ 228 (1352)
.... .+....+.+..++|++. .+.|++++.+-.+|+|.+.|.++|+.+.... ...-....++ .|..+
T Consensus 861 ce~~~E~kVcna~~Pna~~R~iaV-----a~~GN~lAa~LSnGci~~LDaR~G~vINswr-pmecdllqla----apsdq 930 (1034)
T KOG4190|consen 861 CEWTCELKVCNAPGPNALTRAIAV-----ADKGNKLAAALSNGCIAILDARNGKVINSWR-PMECDLLQLA----APSDQ 930 (1034)
T ss_pred ccceeeEEeccCCCCchheeEEEe-----ccCcchhhHHhcCCcEEEEecCCCceeccCC-cccchhhhhc----CchhH
Confidence 5432 22233445678999999 6789999999999999999999999887665 3333334443 56677
Q ss_pred EEEEEeCCCcEEE-EeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCC
Q 000685 229 LLVSGGSDGLLIL-WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPV 307 (1352)
Q Consensus 229 ~LaSgS~DGtVrV-WDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~ 307 (1352)
.++....|.++.+ |....+..... .+....+ ..|-. .-|.-|+++.....+.+|.-. +. ++.+..+
T Consensus 931 ~L~~saldHslaVnWhaldgimh~q------~kpppep---ahflq--svgpSLV~a~~Gn~lgVYad~-a~-~ha~sti 997 (1034)
T KOG4190|consen 931 ALAQSALDHSLAVNWHALDGIMHLQ------DKPPPEP---AHFLQ--SVGPSLVTAQNGNILGVYADS-AE-LHAESTI 997 (1034)
T ss_pred HHHhhcccceeEeeehhcCCeeeec------cCCCCcc---hhhhh--ccCceeEEeccCcEEEEEecc-hh-hhhhhhh
Confidence 8888889999998 97766542221 1111111 11211 135678888877888888522 11 1111111
Q ss_pred Cccc--ccCCceeEEEeCCCCC-EEEEecCCe
Q 000685 308 PKLA--CHSVASWCHPRAPNLD-ILTCVKDSH 336 (1352)
Q Consensus 308 ~~l~--~hs~~V~svafspdg~-lLS~s~Dg~ 336 (1352)
.+++ ...+..++++.-|-+. +++|++.|.
T Consensus 998 tKiR~d~f~G~lTala~LPLN~afLaGne~G~ 1029 (1034)
T KOG4190|consen 998 TKIRPDEFPGTLTALAPLPLNCAFLAGNEHGA 1029 (1034)
T ss_pred ccccccccCCccceeeeccccchhhccCCCCc
Confidence 1122 2223455666666544 566666654
No 249
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.71 E-value=2e-06 Score=104.72 Aligned_cols=156 Identities=16% Similarity=0.084 Sum_probs=97.1
Q ss_pred eeeeeecCCCCeEEEEEecCc---EEEEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECC-C--cEEEE
Q 000685 123 FASPPPSTKGRHFLVICCVNK---AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSD-G--VIRVL 196 (1352)
Q Consensus 123 V~slafspdg~~lLasgs~D~---~I~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~D-G--tIrIW 196 (1352)
+.+++|+||++.++++.+.++ +..||..++....+ ..+........| +++|++|+..+.. + .|.+|
T Consensus 236 ~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l---~~~~~~~~~~~~-----s~dg~~l~~~s~~~g~~~iy~~ 307 (417)
T TIGR02800 236 NGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL---TNGPGIDTEPSW-----SPDGKSIAFTSDRGGSPQIYMM 307 (417)
T ss_pred ccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEEC---CCCCCCCCCEEE-----CCCCCEEEEEECCCCCceEEEE
Confidence 456789999986666655443 44568777654333 223334456678 7799988877653 3 57888
Q ss_pred ECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCC---cEEEEeCCCCCccceecccccccccccceEEEEeec
Q 000685 197 SMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDG---LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSR 273 (1352)
Q Consensus 197 Dl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DG---tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp 273 (1352)
|+.+++.. .+. .+...+.... +++++++|+.++.++ .|.+||+.++... . +..+ .......|+|
T Consensus 308 d~~~~~~~-~l~-~~~~~~~~~~---~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~------l~~~-~~~~~p~~sp 374 (417)
T TIGR02800 308 DADGGEVR-RLT-FRGGYNASPS---WSPDGDLIAFVHREGGGFNIAVMDLDGGGER-V------LTDT-GLDESPSFAP 374 (417)
T ss_pred ECCCCCEE-Eee-cCCCCccCeE---ECCCCCEEEEEEccCCceEEEEEeCCCCCeE-E------ccCC-CCCCCceECC
Confidence 88876653 333 3455566665 689999999888876 7889998875421 1 1111 1234568998
Q ss_pred cCCCCCEEEEEECCC---cEEEEECCCCeEEEE
Q 000685 274 VMGGSPQLITIGADK---TLAIWDTVSFKELRR 303 (1352)
Q Consensus 274 ~~~dg~~LaSgs~Dg---tV~IWDl~tg~~l~~ 303 (1352)
++.+|+..+.++ .+.+.+.. ++..+.
T Consensus 375 ---dg~~l~~~~~~~~~~~l~~~~~~-g~~~~~ 403 (417)
T TIGR02800 375 ---NGRMILYATTRGGRGVLGLVSTD-GRFRAR 403 (417)
T ss_pred ---CCCEEEEEEeCCCcEEEEEEECC-CceeeE
Confidence 777777766543 35555533 444443
No 250
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.69 E-value=9.7e-07 Score=97.34 Aligned_cols=160 Identities=14% Similarity=0.121 Sum_probs=114.5
Q ss_pred eeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECC-C
Q 000685 123 FASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI-S 200 (1352)
Q Consensus 123 V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~-t 200 (1352)
..++.|++.+. -++++-.++.+ .++...+..+.+...+.|.-+.....|. ..+.+++.+|++|+.+..||++ .
T Consensus 124 ~lslD~~~~~~-~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~----~~~pnlvytGgDD~~l~~~D~R~p 198 (339)
T KOG0280|consen 124 ALSLDISTSGT-KIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFS----DKEPNLVYTGGDDGSLSCWDIRIP 198 (339)
T ss_pred eeEEEeeccCc-eEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecc----cCCCceEEecCCCceEEEEEecCC
Confidence 35677888887 45555555555 4566556566666788999899989994 3355799999999999999999 4
Q ss_pred CeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCC-CCccceecccccccccccceEEEEeeccCCCCC
Q 000685 201 WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH-GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSP 279 (1352)
Q Consensus 201 ~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~t-g~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~ 279 (1352)
++.+..-..-|...|.+|. ..+|.+..|++|+.|-.|++||.++ ++.+.. ..-.++|+.+.++|. ...
T Consensus 199 ~~~i~~n~kvH~~GV~SI~--ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~-------~~v~GGVWRi~~~p~--~~~ 267 (339)
T KOG0280|consen 199 KTFIWHNSKVHTSGVVSIY--SSPPKPTYIATGSYDECIRVLDTRNMGKPLFK-------AKVGGGVWRIKHHPE--IFH 267 (339)
T ss_pred cceeeecceeeecceEEEe--cCCCCCceEEEeccccceeeeehhcccCcccc-------CccccceEEEEecch--hhh
Confidence 4555443336999999996 3567889999999999999999985 443322 234488999999994 333
Q ss_pred EEEEEECCCcEEEEECCCC
Q 000685 280 QLITIGADKTLAIWDTVSF 298 (1352)
Q Consensus 280 ~LaSgs~DgtV~IWDl~tg 298 (1352)
.++.++.-+-.+|-+++.+
T Consensus 268 ~lL~~CMh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 268 RLLAACMHNGAKILDSSDK 286 (339)
T ss_pred HHHHHHHhcCceEEEeccc
Confidence 3444444444577776654
No 251
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.69 E-value=1.6e-05 Score=90.80 Aligned_cols=224 Identities=14% Similarity=0.124 Sum_probs=142.6
Q ss_pred CCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEec--Cc-EE--EEEeeCCccccccccccCCCCeE
Q 000685 94 DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCV--NK-AI--FLDLVTMRGRDIPKQELDNKSLV 168 (1352)
Q Consensus 94 Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~--D~-~I--~wDl~t~~~~~i~~~~~h~~~V~ 168 (1352)
++.|.+|++.+...... ...........+-++|+++++.+.++... ++ +. .||..+++...+..........+
T Consensus 15 s~gI~v~~ld~~~g~l~--~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELS--LLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC 92 (346)
T ss_pred CCceEEEEEeCcccccc--hhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe
Confidence 56789998874432211 11112225567889999999844444443 33 33 45666676654444444455557
Q ss_pred EEEEeeccccCCCCEEEEEE-CCCcEEEEECCC-CeE---EEEEecCCCCC----------eeEEEEeeeCCCCCEEEEE
Q 000685 169 CMEFLSRSAVGDVPLVAFGS-SDGVIRVLSMIS-WKL---VRRYTGGHKGS----------ISCLMTFMASSGEALLVSG 233 (1352)
Q Consensus 169 ~vaf~P~s~Spdg~~LasGs-~DGtIrIWDl~t-~~~---i~~l~~gH~~~----------V~slawf~~s~dg~~LaSg 233 (1352)
.+++ +++++++++++ ..|.|.++-++. |.+ +..+ .|.+. +.+.. +.|++++|++.
T Consensus 93 yvsv-----d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~--~h~g~~p~~rQ~~~h~H~a~---~tP~~~~l~v~ 162 (346)
T COG2706 93 YVSV-----DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVV--KHTGSGPHERQESPHVHSAN---FTPDGRYLVVP 162 (346)
T ss_pred EEEE-----CCCCCEEEEEEccCceEEEEEcccCCccccceeee--ecCCCCCCccccCCccceee---eCCCCCEEEEe
Confidence 7888 78999998887 568999999865 322 2222 34444 56554 89999999988
Q ss_pred eC-CCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEE-CCCcEEEEECCCC-e---EEEEecCC
Q 000685 234 GS-DGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIG-ADKTLAIWDTVSF-K---ELRRIKPV 307 (1352)
Q Consensus 234 S~-DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs-~DgtV~IWDl~tg-~---~l~~~~~~ 307 (1352)
.. --+|.+|++..|+.... .+ ..+ .-..+...|.||| ++++....+ .+++|.+|.+... . +++++...
T Consensus 163 DLG~Dri~~y~~~dg~L~~~-~~-~~v-~~G~GPRHi~FHp---n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tl 236 (346)
T COG2706 163 DLGTDRIFLYDLDDGKLTPA-DP-AEV-KPGAGPRHIVFHP---NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTL 236 (346)
T ss_pred ecCCceEEEEEcccCccccc-cc-ccc-CCCCCcceEEEcC---CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccC
Confidence 65 24689999997765432 11 112 3456788999999 788776655 5999999999873 2 34443322
Q ss_pred CcccccCCceeEEEeCCCCCEEEEecCC
Q 000685 308 PKLACHSVASWCHPRAPNLDILTCVKDS 335 (1352)
Q Consensus 308 ~~l~~hs~~V~svafspdg~lLS~s~Dg 335 (1352)
..--........+..++||++|-+|.-+
T Consensus 237 P~dF~g~~~~aaIhis~dGrFLYasNRg 264 (346)
T COG2706 237 PEDFTGTNWAAAIHISPDGRFLYASNRG 264 (346)
T ss_pred ccccCCCCceeEEEECCCCCEEEEecCC
Confidence 2211223345588899999999766555
No 252
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.67 E-value=4.9e-06 Score=102.23 Aligned_cols=155 Identities=14% Similarity=0.063 Sum_probs=104.7
Q ss_pred EEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEEC---CCcEEEEECCCCeEEEEEecCCCCCeeEEEEee
Q 000685 146 FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS---DGVIRVLSMISWKLVRRYTGGHKGSISCLMTFM 222 (1352)
Q Consensus 146 ~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~---DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~ 222 (1352)
++|......+ ....+...+.+..| +|||+.|+..+. +..|.+||+.+++.. .+. .+.+.+.+..
T Consensus 186 ~~d~dg~~~~---~lt~~~~~v~~p~w-----SpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~-~~~g~~~~~~--- 252 (435)
T PRK05137 186 IMDQDGANVR---YLTDGSSLVLTPRF-----SPNRQEITYMSYANGRPRVYLLDLETGQRE-LVG-NFPGMTFAPR--- 252 (435)
T ss_pred EECCCCCCcE---EEecCCCCeEeeEE-----CCCCCEEEEEEecCCCCEEEEEECCCCcEE-Eee-cCCCcccCcE---
Confidence 4466544332 23566778999999 789999888764 468999999988663 333 4556666665
Q ss_pred eCCCCCEEE-EEeCCCc--EEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEEC-CC--cEEEEECC
Q 000685 223 ASSGEALLV-SGGSDGL--LILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA-DK--TLAIWDTV 296 (1352)
Q Consensus 223 ~s~dg~~La-SgS~DGt--VrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~-Dg--tV~IWDl~ 296 (1352)
++|+|+.|+ +.+.++. |.+||+.++.... +..|........|+| |++.|+..+. ++ .|.+||+.
T Consensus 253 ~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-------Lt~~~~~~~~~~~sp---DG~~i~f~s~~~g~~~Iy~~d~~ 322 (435)
T PRK05137 253 FSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-------LTDSPAIDTSPSYSP---DGSQIVFESDRSGSPQLYVMNAD 322 (435)
T ss_pred ECCCCCEEEEEEecCCCceEEEEECCCCceEE-------ccCCCCccCceeEcC---CCCEEEEEECCCCCCeEEEEECC
Confidence 689998765 5566665 7777888765321 344555567789999 7888877664 33 68888987
Q ss_pred CCeEEEEecCCCcccccCCceeEEEeCCCCCEEE
Q 000685 297 SFKELRRIKPVPKLACHSVASWCHPRAPNLDILT 330 (1352)
Q Consensus 297 tg~~l~~~~~~~~l~~hs~~V~svafspdg~lLS 330 (1352)
+++. +.+ ..+...+....|+|+|+.|+
T Consensus 323 g~~~-~~l------t~~~~~~~~~~~SpdG~~ia 349 (435)
T PRK05137 323 GSNP-RRI------SFGGGRYSTPVWSPRGDLIA 349 (435)
T ss_pred CCCe-EEe------ecCCCcccCeEECCCCCEEE
Confidence 6654 332 22233445678999999664
No 253
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.66 E-value=1.1e-06 Score=95.93 Aligned_cols=146 Identities=16% Similarity=0.185 Sum_probs=97.5
Q ss_pred EEEEeeccccCCCCEEEEEEC----------CCcEEEEECCC-CeEEEEEecCCCCCeeEEEEeeeCCCCCEEEE--EeC
Q 000685 169 CMEFLSRSAVGDVPLVAFGSS----------DGVIRVLSMIS-WKLVRRYTGGHKGSISCLMTFMASSGEALLVS--GGS 235 (1352)
Q Consensus 169 ~vaf~P~s~Spdg~~LasGs~----------DGtIrIWDl~t-~~~i~~l~~gH~~~V~slawf~~s~dg~~LaS--gS~ 235 (1352)
.+.| +++|.+|+.-.. -|...+|.++. ...+..+.-...+.|.+++ ++|+++.|+. |..
T Consensus 10 ~~~W-----~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~---WsP~g~~favi~g~~ 81 (194)
T PF08662_consen 10 KLHW-----QPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVA---WSPNGNEFAVIYGSM 81 (194)
T ss_pred EEEe-----cccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEE---ECcCCCEEEEEEccC
Confidence 3566 567777655433 13355555532 2334444323456799998 5889888755 446
Q ss_pred CCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECC---CcEEEEECCCCeEEEEecCCCcccc
Q 000685 236 DGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGAD---KTLAIWDTVSFKELRRIKPVPKLAC 312 (1352)
Q Consensus 236 DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~D---gtV~IWDl~tg~~l~~~~~~~~l~~ 312 (1352)
++.|.+||++ ++.+.. + +...++.+.|+| +|++|++++.+ |.|.+||.++.+.+..+ .
T Consensus 82 ~~~v~lyd~~-~~~i~~------~--~~~~~n~i~wsP---~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~-------~ 142 (194)
T PF08662_consen 82 PAKVTLYDVK-GKKIFS------F--GTQPRNTISWSP---DGRFLVLAGFGNLNGDLEFWDVRKKKKISTF-------E 142 (194)
T ss_pred CcccEEEcCc-ccEeEe------e--cCCCceEEEECC---CCCEEEEEEccCCCcEEEEEECCCCEEeecc-------c
Confidence 7899999997 333322 2 345688999999 89999998754 66999999988887762 2
Q ss_pred cCCceeEEEeCCCCCEE-EEec------CC--eEEeccC
Q 000685 313 HSVASWCHPRAPNLDIL-TCVK------DS--HIWAIEH 342 (1352)
Q Consensus 313 hs~~V~svafspdg~lL-S~s~------Dg--~IWDi~t 342 (1352)
|. .++.+.|+|+|+++ +++. |. +||++..
T Consensus 143 ~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 143 HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 33 45799999999976 3332 32 3788763
No 254
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.66 E-value=0.00056 Score=79.86 Aligned_cols=168 Identities=14% Similarity=0.107 Sum_probs=121.4
Q ss_pred CCCeEEEEEecCcEEEEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCC-cEEEEECCCCeEEEEEec
Q 000685 131 KGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDG-VIRVLSMISWKLVRRYTG 209 (1352)
Q Consensus 131 dg~~lLasgs~D~~I~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DG-tIrIWDl~t~~~i~~l~~ 209 (1352)
+|. +++..+.++..+.+...+-. ....+...|+-..+ ..+++-++.|..|| .+-|+|..+++. +.+.
T Consensus 331 ~Gd-~ia~VSRGkaFi~~~~~~~~----iqv~~~~~VrY~r~-----~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e- 398 (668)
T COG4946 331 NGD-YIALVSRGKAFIMRPWDGYS----IQVGKKGGVRYRRI-----QVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIE- 398 (668)
T ss_pred CCc-EEEEEecCcEEEECCCCCee----EEcCCCCceEEEEE-----ccCCcceEEeccCCceEEEEecCCceE-EEee-
Confidence 354 77777777776664444322 12455666877777 55677889999999 899999998775 4444
Q ss_pred CCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECC--
Q 000685 210 GHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGAD-- 287 (1352)
Q Consensus 210 gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~D-- 287 (1352)
..-+.|.++. .+++|..++.+.....|-+.|+.++....- -+...+-|+...||| ++++|+-+--+
T Consensus 399 ~~lg~I~av~---vs~dGK~~vvaNdr~el~vididngnv~~i------dkS~~~lItdf~~~~---nsr~iAYafP~gy 466 (668)
T COG4946 399 KDLGNIEAVK---VSPDGKKVVVANDRFELWVIDIDNGNVRLI------DKSEYGLITDFDWHP---NSRWIAYAFPEGY 466 (668)
T ss_pred CCccceEEEE---EcCCCcEEEEEcCceEEEEEEecCCCeeEe------cccccceeEEEEEcC---CceeEEEecCcce
Confidence 6678899997 899999999999999999999999874211 133456699999999 78999877655
Q ss_pred --CcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEE
Q 000685 288 --KTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL 329 (1352)
Q Consensus 288 --gtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lL 329 (1352)
..|+++|+.+++....- ..+..=.+-+|.|++++|
T Consensus 467 ~tq~Iklydm~~~Kiy~vT-------T~ta~DfsPaFD~d~ryL 503 (668)
T COG4946 467 YTQSIKLYDMDGGKIYDVT-------TPTAYDFSPAFDPDGRYL 503 (668)
T ss_pred eeeeEEEEecCCCeEEEec-------CCcccccCcccCCCCcEE
Confidence 47899999988865541 122222356788998854
No 255
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.65 E-value=2e-06 Score=105.47 Aligned_cols=178 Identities=18% Similarity=0.102 Sum_probs=112.2
Q ss_pred CCCeeeeeecCCCCeEEEEEec-Cc---EEEEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEE-EEECCCcEE
Q 000685 120 TSGFASPPPSTKGRHFLVICCV-NK---AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVA-FGSSDGVIR 194 (1352)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~-D~---~I~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~La-sGs~DGtIr 194 (1352)
...+.+.+|+|||+ .|+..+. ++ +.+||+.+++...+. .....+.+..| +|||+.|+ +.+.+|...
T Consensus 195 ~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~~~l~---~~~g~~~~~~~-----SPDG~~la~~~~~~g~~~ 265 (427)
T PRK02889 195 PEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRRRVVA---NFKGSNSAPAW-----SPDGRTLAVALSRDGNSQ 265 (427)
T ss_pred CCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCEEEee---cCCCCccceEE-----CCCCCEEEEEEccCCCce
Confidence 55688999999998 5554443 22 446698887654332 22345567889 78998886 456788766
Q ss_pred EEEC--CCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeC-CCcEEEEeCC--CCCccceecccccccccccceEEE
Q 000685 195 VLSM--ISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS-DGLLILWSAD--HGQDSRELVPKLSLKAHDGGVVAV 269 (1352)
Q Consensus 195 IWDl--~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~-DGtVrVWDl~--tg~~~~~~~~~~~l~gH~~~V~sl 269 (1352)
||.+ .++. ...+. .|...+.... +++||+.|+..+. +|...+|.+. ++.. .. .++.+ ......
T Consensus 266 Iy~~d~~~~~-~~~lt-~~~~~~~~~~---wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~----lt~~g--~~~~~~ 333 (427)
T PRK02889 266 IYTVNADGSG-LRRLT-QSSGIDTEPF---FSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QR----VTFTG--SYNTSP 333 (427)
T ss_pred EEEEECCCCC-cEECC-CCCCCCcCeE---EcCCCCEEEEEecCCCCcEEEEEECCCCce-EE----EecCC--CCcCce
Confidence 6654 4444 34444 4555555565 6899998876654 5677777654 3331 11 11222 223457
Q ss_pred EeeccCCCCCEEEEEECCC---cEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEE
Q 000685 270 ELSRVMGGSPQLITIGADK---TLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL 329 (1352)
Q Consensus 270 afsp~~~dg~~LaSgs~Dg---tV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lL 329 (1352)
.|+| ++++|+..+.++ .|.+||+.+++... + ..+ .......|+|||+.|
T Consensus 334 ~~Sp---DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-l------t~~-~~~~~p~~spdg~~l 385 (427)
T PRK02889 334 RISP---DGKLLAYISRVGGAFKLYVQDLATGQVTA-L------TDT-TRDESPSFAPNGRYI 385 (427)
T ss_pred EECC---CCCEEEEEEccCCcEEEEEEECCCCCeEE-c------cCC-CCccCceECCCCCEE
Confidence 8999 788988777654 69999998876432 2 111 123467899999965
No 256
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.63 E-value=4.3e-06 Score=101.60 Aligned_cols=347 Identities=12% Similarity=0.108 Sum_probs=210.9
Q ss_pred eEEecCCCCCEEEEEEcCC------------CCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec-----cccc-
Q 000685 4 LKAFRPTNDKIVKIQLHPT------------HPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG-----AKLE- 65 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPd------------g~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs-----~dg~- 65 (1352)
++.++-|...|+.+.|.|- ..+||+++..|.|.|||...+..+..+. ++.+.+.-++ ++.+
T Consensus 48 iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~-~~~~~~qdl~W~~~rd~Srd 126 (1062)
T KOG1912|consen 48 IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLS-HSNDSVQDLCWVPARDDSRD 126 (1062)
T ss_pred hhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhc-CCCcchhheeeeeccCcchh
Confidence 6788999999999999872 2378889999999999999888877776 3333322221 2332
Q ss_pred eeEecccccCCCccccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCC-CCeEEEEEecCcE
Q 000685 66 KLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTK-GRHFLVICCVNKA 144 (1352)
Q Consensus 66 ~Lasgs~d~~g~~l~~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspd-g~~lLasgs~D~~ 144 (1352)
.|+..+ ...++.+|+..+|+.. +..... .....|+.+.|- .+++.+.|+.+.+
T Consensus 127 ~LlaIh---------------------~ss~lvLwntdtG~k~---Wk~~ys--~~iLs~f~~DPfd~rh~~~l~s~g~v 180 (1062)
T KOG1912|consen 127 VLLAIH---------------------GSSTLVLWNTDTGEKF---WKYDYS--HEILSCFRVDPFDSRHFCVLGSKGFV 180 (1062)
T ss_pred eeEEec---------------------CCcEEEEEEccCCcee---eccccC--CcceeeeeeCCCCcceEEEEccCceE
Confidence 222221 3568899999888765 222222 345666778774 3445555554444
Q ss_pred EEEE-eeCCc----cccccccccCCC----------------C-------eEE--EEEeeccccCCCCEEEEEECCCcEE
Q 000685 145 IFLD-LVTMR----GRDIPKQELDNK----------------S-------LVC--MEFLSRSAVGDVPLVAFGSSDGVIR 194 (1352)
Q Consensus 145 I~wD-l~t~~----~~~i~~~~~h~~----------------~-------V~~--vaf~P~s~Spdg~~LasGs~DGtIr 194 (1352)
+..+ .-..+ .+.......|.+ . ..| ++| +|.-+.++.......+.
T Consensus 181 l~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf-----~p~~rn~lfi~~prell 255 (1062)
T KOG1912|consen 181 LSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAF-----SPHWRNILFITFPRELL 255 (1062)
T ss_pred EEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhc-----ChhhhceEEEEeccceE
Confidence 4443 21111 111111111111 0 112 344 44445555555677799
Q ss_pred EEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCC----------------CCcc--------
Q 000685 195 VLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH----------------GQDS-------- 250 (1352)
Q Consensus 195 IWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~t----------------g~~~-------- 250 (1352)
++|++-..++..+. --.+.+.-+.|+ ..+....|.+...||.+.+|--+. +.+.
T Consensus 256 v~dle~~~~l~vvp-ier~~akfv~vl-P~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~ 333 (1062)
T KOG1912|consen 256 VFDLEYECCLAVVP-IERGGAKFVDVL-PDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEE 333 (1062)
T ss_pred EEcchhhceeEEEE-eccCCcceeEec-cCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechh
Confidence 99999877777664 444555555543 566677888888899888885432 0000
Q ss_pred ------------------------------c-------------------------------eecccccccccccceEEE
Q 000685 251 ------------------------------R-------------------------------ELVPKLSLKAHDGGVVAV 269 (1352)
Q Consensus 251 ------------------------------~-------------------------------~~~~~~~l~gH~~~V~sl 269 (1352)
. .+.....-.+|..++.+.
T Consensus 334 ~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~ 413 (1062)
T KOG1912|consen 334 FRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCV 413 (1062)
T ss_pred cccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceee
Confidence 0 000000012466666666
Q ss_pred EeeccCC--------C-------CCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEEEEecC
Q 000685 270 ELSRVMG--------G-------SPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKD 334 (1352)
Q Consensus 270 afsp~~~--------d-------g~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lLS~s~D 334 (1352)
..+|... . -.+++.|...|+|.++|+.++..-.. +..|+..|.++.|.....+++.+..
T Consensus 414 ~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~------fsvht~~VkgleW~g~sslvSfsys 487 (1062)
T KOG1912|consen 414 RMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAAS------FSVHTSLVKGLEWLGNSSLVSFSYS 487 (1062)
T ss_pred ecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhh------hcccccceeeeeeccceeEEEeeec
Confidence 6665310 1 24678899999999999998876555 6789999999999988888864421
Q ss_pred ------C----e--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCC
Q 000685 335 ------S----H--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1352)
Q Consensus 335 ------g----~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~~ 402 (1352)
| . |-|++++. ...+.++ ......+|..+..+. .+.+++..-.+.-+ -+||.+.
T Consensus 488 ~~n~~sg~vrN~l~vtdLrtGl----sk~fR~l---------~~~despI~~irvS~-~~~yLai~Fr~~pl-Eiwd~kt 552 (1062)
T KOG1912|consen 488 HVNSASGGVRNDLVVTDLRTGL----SKRFRGL---------QKPDESPIRAIRVSS-SGRYLAILFRREPL-EIWDLKT 552 (1062)
T ss_pred cccccccceeeeEEEEEccccc----ccccccC---------CCCCcCcceeeeecc-cCceEEEEecccch-HHHhhcc
Confidence 1 1 45666652 2222221 222233888899888 57778888888886 7999876
Q ss_pred CCC
Q 000685 403 LPA 405 (1352)
Q Consensus 403 ~p~ 405 (1352)
...
T Consensus 553 ~~~ 555 (1062)
T KOG1912|consen 553 LRM 555 (1062)
T ss_pred chH
Confidence 443
No 257
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.61 E-value=5.6e-06 Score=102.02 Aligned_cols=170 Identities=14% Similarity=0.045 Sum_probs=99.1
Q ss_pred eeeeecCCCCeEEEEEecCc---EEEEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEEC-CC--cEEEEE
Q 000685 124 ASPPPSTKGRHFLVICCVNK---AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS-DG--VIRVLS 197 (1352)
Q Consensus 124 ~slafspdg~~lLasgs~D~---~I~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~-DG--tIrIWD 197 (1352)
....|+|||+.++++.+.++ +.++|..+++.+.+ ..+........| +|||++|+..+. ++ .|.++|
T Consensus 265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~l---t~~~~~~~~p~w-----SpDG~~I~f~s~~~g~~~Iy~~d 336 (448)
T PRK04792 265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRI---TRHRAIDTEPSW-----HPDGKSLIFTSERGGKPQIYRVN 336 (448)
T ss_pred CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEEC---ccCCCCccceEE-----CCCCCEEEEEECCCCCceEEEEE
Confidence 35689999986666666665 33558877654433 233445566788 789998877664 33 466678
Q ss_pred CCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeC-CC--cEEEEeCCCCCccceecccccccccccceEEEEeecc
Q 000685 198 MISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS-DG--LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRV 274 (1352)
Q Consensus 198 l~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~-DG--tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~ 274 (1352)
+.+++...... +........ ++|+|+.|+..+. ++ .|.++|+.+++.. . +... .......|+|
T Consensus 337 l~~g~~~~Lt~--~g~~~~~~~---~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~------lt~~-~~d~~ps~sp- 402 (448)
T PRK04792 337 LASGKVSRLTF--EGEQNLGGS---ITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-V------LTST-RLDESPSVAP- 402 (448)
T ss_pred CCCCCEEEEec--CCCCCcCee---ECCCCCEEEEEEecCCceEEEEEECCCCCeE-E------ccCC-CCCCCceECC-
Confidence 77776543322 222233344 6899988877655 34 3555677766531 1 1111 1122347999
Q ss_pred CCCCCEEEEEE-CCCc--EEEEECCCCeEEEEecCCCcccccCCceeEEEeCC
Q 000685 275 MGGSPQLITIG-ADKT--LAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAP 324 (1352)
Q Consensus 275 ~~dg~~LaSgs-~Dgt--V~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafsp 324 (1352)
++++|+..+ .++. +.+++. +|...+. +..+...+...+|+|
T Consensus 403 --dG~~I~~~~~~~g~~~l~~~~~-~G~~~~~------l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 403 --NGTMVIYSTTYQGKQVLAAVSI-DGRFKAR------LPAGQGEVKSPAWSP 446 (448)
T ss_pred --CCCEEEEEEecCCceEEEEEEC-CCCceEE------CcCCCCCcCCCccCC
Confidence 677766554 4443 667776 4555554 233444455667776
No 258
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.61 E-value=6.8e-06 Score=100.80 Aligned_cols=171 Identities=13% Similarity=0.011 Sum_probs=99.6
Q ss_pred eeeeeecCCCCeEEEEEecCc---EEEEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEEC-CC--cEEEE
Q 000685 123 FASPPPSTKGRHFLVICCVNK---AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS-DG--VIRVL 196 (1352)
Q Consensus 123 V~slafspdg~~lLasgs~D~---~I~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~-DG--tIrIW 196 (1352)
+....|+|||+.++++...++ +.++|..+++...+ ..+........| +|+|+.|+..+. +| .|.++
T Consensus 245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l---t~~~~~~~~~~~-----spDg~~i~f~s~~~g~~~iy~~ 316 (430)
T PRK00178 245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRV---TNHPAIDTEPFW-----GKDGRTLYFTSDRGGKPQIYKV 316 (430)
T ss_pred cCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEc---ccCCCCcCCeEE-----CCCCCEEEEEECCCCCceEEEE
Confidence 345789999985555555444 33558887764433 223334555678 789998877764 33 57777
Q ss_pred ECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCC-C--cEEEEeCCCCCccceecccccccccccceEEEEeec
Q 000685 197 SMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSD-G--LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSR 273 (1352)
Q Consensus 197 Dl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~D-G--tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp 273 (1352)
|+.+++..+....+ ....... ++|+++.|+..+.+ + .|.+||+.+++.. . +. +........|+|
T Consensus 317 d~~~g~~~~lt~~~--~~~~~~~---~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~------lt-~~~~~~~p~~sp 383 (430)
T PRK00178 317 NVNGGRAERVTFVG--NYNARPR---LSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-I------LT-DTSLDESPSVAP 383 (430)
T ss_pred ECCCCCEEEeecCC--CCccceE---ECCCCCEEEEEEccCCceEEEEEECCCCCEE-E------cc-CCCCCCCceECC
Confidence 88777654332212 2223343 68999998877653 3 4788999877532 1 11 111122458999
Q ss_pred cCCCCCEEEEEECC---CcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCC
Q 000685 274 VMGGSPQLITIGAD---KTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAP 324 (1352)
Q Consensus 274 ~~~dg~~LaSgs~D---gtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafsp 324 (1352)
++++|+..+.+ ..|.++++. |...+. +..+...+...+|+|
T Consensus 384 ---dg~~i~~~~~~~g~~~l~~~~~~-g~~~~~------l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 384 ---NGTMLIYATRQQGRGVLMLVSIN-GRVRLP------LPTAQGEVREPSWSP 427 (430)
T ss_pred ---CCCEEEEEEecCCceEEEEEECC-CCceEE------CcCCCCCcCCCccCC
Confidence 77777766543 346667764 333333 223333445556665
No 259
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.60 E-value=7.6e-05 Score=88.96 Aligned_cols=251 Identities=12% Similarity=0.049 Sum_probs=142.8
Q ss_pred eeeeeecCCCCeEEEEEec----CcEE-EEEeeC--CccccccccccCCCCeEEEEEeeccccCCCCEEEEEE-CCCcEE
Q 000685 123 FASPPPSTKGRHFLVICCV----NKAI-FLDLVT--MRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGS-SDGVIR 194 (1352)
Q Consensus 123 V~slafspdg~~lLasgs~----D~~I-~wDl~t--~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs-~DGtIr 194 (1352)
...++++|+++ +|.+... ++.+ .+.+.. +++..+............+++ ++++++|+++. .+|+|.
T Consensus 39 Ps~l~~~~~~~-~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~-----~~~g~~l~vany~~g~v~ 112 (345)
T PF10282_consen 39 PSWLAVSPDGR-RLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAV-----DPDGRFLYVANYGGGSVS 112 (345)
T ss_dssp ECCEEE-TTSS-EEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEE-----CTTSSEEEEEETTTTEEE
T ss_pred CceEEEEeCCC-EEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEE-----ecCCCEEEEEEccCCeEE
Confidence 45577888887 4444443 3444 444433 454444333335566777888 78999998887 589999
Q ss_pred EEECCC-CeEEEE---Eec---------CCCCCeeEEEEeeeCCCCCEEEEEeC-CCcEEEEeCCCCCc-cceecccccc
Q 000685 195 VLSMIS-WKLVRR---YTG---------GHKGSISCLMTFMASSGEALLVSGGS-DGLLILWSADHGQD-SRELVPKLSL 259 (1352)
Q Consensus 195 IWDl~t-~~~i~~---l~~---------gH~~~V~slawf~~s~dg~~LaSgS~-DGtVrVWDl~tg~~-~~~~~~~~~l 259 (1352)
++++.. +..... +.. .......++. ++|+++++++... ...|.+|++..... +.. .....
T Consensus 113 v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~---~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~-~~~~~- 187 (345)
T PF10282_consen 113 VFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVV---FSPDGRFVYVPDLGADRVYVYDIDDDTGKLTP-VDSIK- 187 (345)
T ss_dssp EEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEE---E-TTSSEEEEEETTTTEEEEEEE-TTS-TEEE-EEEEE-
T ss_pred EEEccCCcccceeeeecccCCCCCcccccccccceeEE---ECCCCCEEEEEecCCCEEEEEEEeCCCceEEE-eeccc-
Confidence 999986 443322 210 0123455664 7999998877653 45799999977652 211 11111
Q ss_pred cccccceEEEEeeccCCCCCEEE-EEECCCcEEEEECC--CCe--EEEEecCCCcccccCCceeEEEeCCCCCEEEEe--
Q 000685 260 KAHDGGVVAVELSRVMGGSPQLI-TIGADKTLAIWDTV--SFK--ELRRIKPVPKLACHSVASWCHPRAPNLDILTCV-- 332 (1352)
Q Consensus 260 ~gH~~~V~slafsp~~~dg~~La-Sgs~DgtV~IWDl~--tg~--~l~~~~~~~~l~~hs~~V~svafspdg~lLS~s-- 332 (1352)
.....+...+.|+| +++++. +.-.+++|.+|++. ++. .++++.....-.........+.++|||++|-.+
T Consensus 188 ~~~G~GPRh~~f~p---dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr 264 (345)
T PF10282_consen 188 VPPGSGPRHLAFSP---DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR 264 (345)
T ss_dssp CSTTSSEEEEEE-T---TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC
T ss_pred cccCCCCcEEEEcC---CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec
Confidence 23456789999999 677665 45568899999988 443 333333221111112256689999999976333
Q ss_pred cCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecC
Q 000685 333 KDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDP 400 (1352)
Q Consensus 333 ~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~ 400 (1352)
.++. +|+++.... .+ ..+..+...+. .-..+.++|++..+++++..++.| .+|+.
T Consensus 265 ~~~sI~vf~~d~~~g-----~l------~~~~~~~~~G~-~Pr~~~~s~~g~~l~Va~~~s~~v-~vf~~ 321 (345)
T PF10282_consen 265 GSNSISVFDLDPATG-----TL------TLVQTVPTGGK-FPRHFAFSPDGRYLYVANQDSNTV-SVFDI 321 (345)
T ss_dssp TTTEEEEEEECTTTT-----TE------EEEEEEEESSS-SEEEEEE-TTSSEEEEEETTTTEE-EEEEE
T ss_pred cCCEEEEEEEecCCC-----ce------EEEEEEeCCCC-CccEEEEeCCCCEEEEEecCCCeE-EEEEE
Confidence 3333 788742211 00 11223333333 578899999655555555566665 56653
No 260
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.57 E-value=8.8e-05 Score=90.95 Aligned_cols=160 Identities=21% Similarity=0.226 Sum_probs=123.3
Q ss_pred HHHHHHhCCcchhhcccccccCccEEEeecccccHHHHHHHHhhcccccccCCCCCCCCccccccccccchhhhhhhhhh
Q 000685 935 LAQFMLGMGYATEALHLPGISKRLEFDLAMQSNDLKRALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGI 1014 (1352)
Q Consensus 935 ~a~fl~~~G~~e~Al~~~~ds~~~kf~la~~~g~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1014 (1352)
+++=|+..=-.|.+=..+.+ .-+.|.+-+-.|+++.|+.-. +-+.++
T Consensus 711 ~~~pLrdFvgle~Cd~~TRk-aml~FSfyvtiG~MD~AfksI------~~IkS~-------------------------- 757 (1416)
T KOG3617|consen 711 VAKPLRDFVGLENCDESTRK-AMLDFSFYVTIGSMDAAFKSI------QFIKSD-------------------------- 757 (1416)
T ss_pred hhhhHHHhcCccccCHHHHH-hhhceeEEEEeccHHHHHHHH------HHHhhh--------------------------
Confidence 44445544445666667788 688999999999999999988 445555
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcccccccccchhhHHHHhccCChhHHHHHHHHHHHcCCcHHHHHH
Q 000685 1015 VKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFS 1094 (1352)
Q Consensus 1015 ~~~~~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~~af~ 1094 (1352)
..|..++..+..+.++++|.-|+-+.++.. ||+ +|.-+...+-+.=.+.+-.|.+-|-. .-|..
T Consensus 758 ----~vW~nmA~McVkT~RLDVAkVClGhm~~aR---gaR--------AlR~a~q~~~e~eakvAvLAieLgMl-EeA~~ 821 (1416)
T KOG3617|consen 758 ----SVWDNMASMCVKTRRLDVAKVCLGHMKNAR---GAR--------ALRRAQQNGEEDEAKVAVLAIELGML-EEALI 821 (1416)
T ss_pred ----HHHHHHHHHhhhhccccHHHHhhhhhhhhh---hHH--------HHHHHHhCCcchhhHHHHHHHHHhhH-HHHHH
Confidence 899999999999999999999999995433 222 23333433335566777778999988 77888
Q ss_pred HH-HcCCHHHHHHHHHHcCCcHHHHHHHHHcCCCchHHHHHHHHHHHhhh
Q 000685 1095 AA-ILGDNALMEKAWQDTGMLAEAVLHAHAHGRPSLKNLVEAWNKMLQKE 1143 (1352)
Q Consensus 1095 ~~-~lgd~~~~~~~l~~~~~~~~A~~~A~t~~~~~~~~~~~~w~~~l~~~ 1143 (1352)
.+ .....+..-++||..|||.||...|.++-+=.+++---..-+.|...
T Consensus 822 lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 822 LYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 77 88889999999999999999999999999888776665555566544
No 261
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.55 E-value=4.1e-05 Score=90.34 Aligned_cols=241 Identities=15% Similarity=0.151 Sum_probs=142.7
Q ss_pred EcCCCCEEEEEeC----------CCcEEEEECCCCcEEEEEeccCccc--------eEEeccccceeEecccccCCCccc
Q 000685 19 LHPTHPWLVTADA----------SDHVSVWNWEHRQVIYELKAGGVDQ--------RRLVGAKLEKLAEGELEHKGKPTE 80 (1352)
Q Consensus 19 fSPdg~~LaTgs~----------DG~VrVWDl~tg~~i~t~~~~~~~~--------i~~vs~dg~~Lasgs~d~~g~~l~ 80 (1352)
+||||+.|+.+.. +..|.|||..+++.+.++..+.... ...+++||++|.....+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~------- 125 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS------- 125 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCC-------
Confidence 9999998777755 7899999999999999998643323 66777999888765422
Q ss_pred cccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEEEe-eCCccccccc
Q 000685 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDL-VTMRGRDIPK 159 (1352)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl-~t~~~~~i~~ 159 (1352)
-+..+.+.|+.+++.+.... . ..+..-...++ .. +.+.|.+.....+.+ .+++......
T Consensus 126 ------------p~~~V~VvD~~~~kvv~ei~---v---p~~~~vy~t~e-~~-~~~~~~Dg~~~~v~~d~~g~~~~~~~ 185 (352)
T TIGR02658 126 ------------PSPAVGVVDLEGKAFVRMMD---V---PDCYHIFPTAN-DT-FFMHCRDGSLAKVGYGTKGNPKIKPT 185 (352)
T ss_pred ------------CCCEEEEEECCCCcEEEEEe---C---CCCcEEEEecC-Cc-cEEEeecCceEEEEecCCCceEEeee
Confidence 27789999999887653110 0 01111111111 11 223333333333311 1111110000
Q ss_pred cccCC--CCeEEE-EEeeccccCCCCEEEEEECCCcEEEEECCC-----CeEEEEEecC------CCCCeeEEEEeeeCC
Q 000685 160 QELDN--KSLVCM-EFLSRSAVGDVPLVAFGSSDGVIRVLSMIS-----WKLVRRYTGG------HKGSISCLMTFMASS 225 (1352)
Q Consensus 160 ~~~h~--~~V~~v-af~P~s~Spdg~~LasGs~DGtIrIWDl~t-----~~~i~~l~~g------H~~~V~slawf~~s~ 225 (1352)
...+. .++..= .|. ..+|.++..... |+|.+.|+.. .+.+..+..+ ..+...-++ +++
T Consensus 186 ~vf~~~~~~v~~rP~~~----~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia---~~~ 257 (352)
T TIGR02658 186 EVFHPEDEYLINHPAYS----NKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVA---YHR 257 (352)
T ss_pred eeecCCccccccCCceE----cCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEE---EcC
Confidence 01111 111000 221 227777766666 9999999643 2322222111 233334455 788
Q ss_pred CCCEEEEEeC----------CCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCC-EEEEEE-CCCcEEEE
Q 000685 226 GEALLVSGGS----------DGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSP-QLITIG-ADKTLAIW 293 (1352)
Q Consensus 226 dg~~LaSgS~----------DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~-~LaSgs-~DgtV~IW 293 (1352)
+++.+..... .+.|.++|..+++.+..+ . -...+..++++| |++ +|++.. .++.|.++
T Consensus 258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i------~-vG~~~~~iavS~---Dgkp~lyvtn~~s~~VsVi 327 (352)
T TIGR02658 258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKI------E-LGHEIDSINVSQ---DAKPLLYALSTGDKTLYIF 327 (352)
T ss_pred CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEE------e-CCCceeeEEECC---CCCeEEEEeCCCCCcEEEE
Confidence 8887776431 257999999998876652 1 234689999999 666 666555 68899999
Q ss_pred ECCCCeEEEEe
Q 000685 294 DTVSFKELRRI 304 (1352)
Q Consensus 294 Dl~tg~~l~~~ 304 (1352)
|..+++.++++
T Consensus 328 D~~t~k~i~~i 338 (352)
T TIGR02658 328 DAETGKELSSV 338 (352)
T ss_pred ECcCCeEEeee
Confidence 99999998885
No 262
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.54 E-value=0.00012 Score=87.16 Aligned_cols=256 Identities=11% Similarity=0.047 Sum_probs=151.2
Q ss_pred CCEEEEEEcCCCCEEEEEeC----CCcEEEEECCCC--c--EEEEEe-ccCccceEEeccccceeEecccccCCCccccc
Q 000685 12 DKIVKIQLHPTHPWLVTADA----SDHVSVWNWEHR--Q--VIYELK-AGGVDQRRLVGAKLEKLAEGELEHKGKPTEAM 82 (1352)
Q Consensus 12 ~~V~~lafSPdg~~LaTgs~----DG~VrVWDl~tg--~--~i~t~~-~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l 82 (1352)
..-..++++|++++|.+... +|.|..|++... + .+.+.. .+....-..+.+++++|+.+..
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany---------- 106 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANY---------- 106 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEET----------
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEc----------
Confidence 34566889999999998876 578999987753 3 344444 2333334455578887776542
Q ss_pred cCCceEEEEEcCCeEEEEEcCCccccccccccc---------cccCCCCeeeeeecCCCCeEEEEE-ecCcEEEEEeeCC
Q 000685 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTA---------VSNVTSGFASPPPSTKGRHFLVIC-CVNKAIFLDLVTM 152 (1352)
Q Consensus 83 ~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~---------~~~~~~~V~slafspdg~~lLasg-s~D~~I~wDl~t~ 152 (1352)
.+|.+.++++.....+....... .........++.|+|+++.++++. +.|.+.++++...
T Consensus 107 ----------~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~ 176 (345)
T PF10282_consen 107 ----------GGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDD 176 (345)
T ss_dssp ----------TTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TT
T ss_pred ----------cCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCC
Confidence 35667777766532211110000 011134578899999998555444 3555556677654
Q ss_pred c--ccccccc-ccCCCCeEEEEEeeccccCCCCEEEEEE-CCCcEEEEECC--CCe--EEEEEe---cCCC--CCeeEEE
Q 000685 153 R--GRDIPKQ-ELDNKSLVCMEFLSRSAVGDVPLVAFGS-SDGVIRVLSMI--SWK--LVRRYT---GGHK--GSISCLM 219 (1352)
Q Consensus 153 ~--~~~i~~~-~~h~~~V~~vaf~P~s~Spdg~~LasGs-~DGtIrIWDl~--t~~--~i~~l~---~gH~--~~V~sla 219 (1352)
. ....... .......+.+.| +|+++++++.+ .+++|.+|++. ++. .+..+. .+.. .....|.
T Consensus 177 ~~~l~~~~~~~~~~G~GPRh~~f-----~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 251 (345)
T PF10282_consen 177 TGKLTPVDSIKVPPGSGPRHLAF-----SPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIA 251 (345)
T ss_dssp S-TEEEEEEEECSTTSSEEEEEE------TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEE
T ss_pred CceEEEeeccccccCCCCcEEEE-----cCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEE
Confidence 4 2221112 234667899999 67898876655 67889999988 443 333332 1111 1445554
Q ss_pred EeeeCCCCCEEEEEe-CCCcEEEEeCCC--CCccceecccccccccccceEEEEeeccCCCCCEEEEEE-CCCcEEEEEC
Q 000685 220 TFMASSGEALLVSGG-SDGLLILWSADH--GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIG-ADKTLAIWDT 295 (1352)
Q Consensus 220 wf~~s~dg~~LaSgS-~DGtVrVWDl~t--g~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs-~DgtV~IWDl 295 (1352)
++|+|++|..+. .+++|.+|+++. +.. .. ...+.........+.++| ++++|+++. .++.|.+|++
T Consensus 252 ---ispdg~~lyvsnr~~~sI~vf~~d~~~g~l-~~---~~~~~~~G~~Pr~~~~s~---~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 252 ---ISPDGRFLYVSNRGSNSISVFDLDPATGTL-TL---VQTVPTGGKFPRHFAFSP---DGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp ---E-TTSSEEEEEECTTTEEEEEEECTTTTTE-EE---EEEEEESSSSEEEEEE-T---TSSEEEEEETTTTEEEEEEE
T ss_pred ---EecCCCEEEEEeccCCEEEEEEEecCCCce-EE---EEEEeCCCCCccEEEEeC---CCCEEEEEecCCCeEEEEEE
Confidence 899999876655 578899999943 332 21 112232344588999999 788887776 5778999976
Q ss_pred --CCCeEEE
Q 000685 296 --VSFKELR 302 (1352)
Q Consensus 296 --~tg~~l~ 302 (1352)
.+|....
T Consensus 322 d~~tG~l~~ 330 (345)
T PF10282_consen 322 DPDTGKLTP 330 (345)
T ss_dssp ETTTTEEEE
T ss_pred eCCCCcEEE
Confidence 4666443
No 263
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.53 E-value=3.3e-06 Score=100.91 Aligned_cols=173 Identities=19% Similarity=0.204 Sum_probs=136.3
Q ss_pred CCCCEEEEEECCCcEEEEECCCCeEEEEEec-C-CCCCeeEEEEee-----------------eCCCCCEEEEEeCCCcE
Q 000685 179 GDVPLVAFGSSDGVIRVLSMISWKLVRRYTG-G-HKGSISCLMTFM-----------------ASSGEALLVSGGSDGLL 239 (1352)
Q Consensus 179 pdg~~LasGs~DGtIrIWDl~t~~~i~~l~~-g-H~~~V~slawf~-----------------~s~dg~~LaSgS~DGtV 239 (1352)
+...+++..+.||.+||||...++....+.. . -++...+..|-. -+.+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4578999999999999999998887766641 1 234455555541 12233578888999999
Q ss_pred EEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeE
Q 000685 240 ILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWC 319 (1352)
Q Consensus 240 rVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~s 319 (1352)
.+|++..++.... +.-.+|.++|+++.++. +-..|.|++.|+.+..|+..+++..+.+ .+....+.+
T Consensus 83 ~~ys~~~g~it~~----~st~~h~~~v~~~~~~~---~~~ciyS~~ad~~v~~~~~~~~~~~~~~------~~~~~~~~s 149 (541)
T KOG4547|consen 83 LLYSVAGGEITAK----LSTDKHYGNVNEILDAQ---RLGCIYSVGADLKVVYILEKEKVIIRIW------KEQKPLVSS 149 (541)
T ss_pred EEEEecCCeEEEE----EecCCCCCcceeeeccc---ccCceEecCCceeEEEEecccceeeeee------ccCCCccce
Confidence 9999998876543 33468999999999987 6789999999999999999998887774 556677889
Q ss_pred EEeCCCCCEE-EEecCCeEEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecC
Q 000685 320 HPRAPNLDIL-TCVKDSHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSL 380 (1352)
Q Consensus 320 vafspdg~lL-S~s~Dg~IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~ 380 (1352)
++.+|||.++ ++|..-.+||+++.. -+..|.+|.. .|.++.|-..
T Consensus 150 l~is~D~~~l~~as~~ik~~~~~~ke---------------vv~~ftgh~s-~v~t~~f~~~ 195 (541)
T KOG4547|consen 150 LCISPDGKILLTASRQIKVLDIETKE---------------VVITFTGHGS-PVRTLSFTTL 195 (541)
T ss_pred EEEcCCCCEEEeccceEEEEEccCce---------------EEEEecCCCc-ceEEEEEEEe
Confidence 9999999866 677777899999763 3678899988 9999999874
No 264
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=5e-05 Score=90.50 Aligned_cols=321 Identities=12% Similarity=0.074 Sum_probs=179.6
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEE--eccccceeEecccccCCCccccccCCceE
Q 000685 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRL--VGAKLEKLAEGELEHKGKPTEAMRGGSVK 88 (1352)
Q Consensus 11 s~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~--vs~dg~~Lasgs~d~~g~~l~~l~~g~V~ 88 (1352)
...++..++|++|++++.+ .++.++|++..++..+.+.... ..+. .+|.+.+|.+-..-. +-..+..
T Consensus 34 ~~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~~---~~~~L~fSP~g~yL~T~e~~~------i~~~~~~- 102 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCVELK---KTYDLLFSPKGNYLLTWEPWA------IYGPKNA- 102 (566)
T ss_pred CCcceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEeccc---eeeeeeecccccccccccccc------cccCCCC-
Confidence 3446788899999887776 6788999999888655555432 2222 236666665421100 0000000
Q ss_pred EEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEEEeeCCccccccccccCCCCeE
Q 000685 89 QVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLV 168 (1352)
Q Consensus 89 sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl~t~~~~~i~~~~~h~~~V~ 168 (1352)
....+++|++.++ +........ . .. -++..|+.|.. +.+--..+-+.+++....+ ......|...|+
T Consensus 103 ----~~pn~~v~~vet~-~~~s~~q~k--~-Q~-~W~~qfs~dEs-l~arlv~nev~f~~~~~f~---~~~~kl~~~~i~ 169 (566)
T KOG2315|consen 103 ----SNPNVLVYNVETG-VQRSQIQKK--M-QN-GWVPQFSIDES-LAARLVSNEVQFYDLGSFK---TIQHKLSVSGIT 169 (566)
T ss_pred ----CCCceeeeeeccc-eehhheehh--h-hc-Ccccccccchh-hhhhhhcceEEEEecCCcc---ceeeeeecccee
Confidence 1346789999984 332111111 1 11 15888999875 4333333334455665532 223466788999
Q ss_pred EEEEeeccccCCCCEEEE-----EECCCcEEEEECCCCeE-----EEEEecCCCCCeeEEEEeeeCCCCCEEEEEeC--C
Q 000685 169 CMEFLSRSAVGDVPLVAF-----GSSDGVIRVLSMISWKL-----VRRYTGGHKGSISCLMTFMASSGEALLVSGGS--D 236 (1352)
Q Consensus 169 ~vaf~P~s~Spdg~~Las-----Gs~DGtIrIWDl~t~~~-----i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~--D 236 (1352)
.+.++| .|....+++ ++.-+.|+||...-... .++|. ..+.|... | ......+|+.++. |
T Consensus 170 ~f~lSp---gp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF--kadkvqm~-W--N~~gt~LLvLastdVD 241 (566)
T KOG2315|consen 170 MLSLSP---GPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF--KADKVQMK-W--NKLGTALLVLASTDVD 241 (566)
T ss_pred eEEecC---CCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc--ccceeEEE-e--ccCCceEEEEEEEeec
Confidence 999965 334455554 33456799998762211 12221 12333322 4 2233334443333 3
Q ss_pred ---------CcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEE--EEEECCCcEEEEECCCCeEEEEec
Q 000685 237 ---------GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQL--ITIGADKTLAIWDTVSFKELRRIK 305 (1352)
Q Consensus 237 ---------GtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~L--aSgs~DgtV~IWDl~tg~~l~~~~ 305 (1352)
.++++.++....+. ..+. ..++|.++.|+| +++-+ +-|-.--++.|||++ +..+..|
T Consensus 242 ktn~SYYGEq~Lyll~t~g~s~~------V~L~-k~GPVhdv~W~~---s~~EF~VvyGfMPAkvtifnlr-~~~v~df- 309 (566)
T KOG2315|consen 242 KTNASYYGEQTLYLLATQGESVS------VPLL-KEGPVHDVTWSP---SGREFAVVYGFMPAKVTIFNLR-GKPVFDF- 309 (566)
T ss_pred CCCccccccceEEEEEecCceEE------EecC-CCCCceEEEECC---CCCEEEEEEecccceEEEEcCC-CCEeEeC-
Confidence 35777777632221 1122 468899999999 55443 344467889999976 5666553
Q ss_pred CCCcccccCCceeEEEeCCCCCEE-EEecCC-----eEEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEec
Q 000685 306 PVPKLACHSVASWCHPRAPNLDIL-TCVKDS-----HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHS 379 (1352)
Q Consensus 306 ~~~~l~~hs~~V~svafspdg~lL-S~s~Dg-----~IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp 379 (1352)
-.++-+++-|+|.|.+| .+|.++ .|||+.+.+ .+..+... .-+-..|+|
T Consensus 310 -------~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K---------------~i~~~~a~---~tt~~eW~P 364 (566)
T KOG2315|consen 310 -------PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK---------------LIAKFKAA---NTTVFEWSP 364 (566)
T ss_pred -------CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchh---------------hccccccC---CceEEEEcC
Confidence 23344578999999976 466544 289998642 12222222 345579999
Q ss_pred CCCcEEEEEEC------CCeEEEEecCCC
Q 000685 380 LQPHLVATGTN------VGVIISEFDPRS 402 (1352)
Q Consensus 380 ~~~~lLatGs~------DG~IlriWd~~~ 402 (1352)
+ |.++.|++. |+-+ ++|++..
T Consensus 365 d-Ge~flTATTaPRlrvdNg~-KiwhytG 391 (566)
T KOG2315|consen 365 D-GEYFLTATTAPRLRVDNGI-KIWHYTG 391 (566)
T ss_pred C-CcEEEEEeccccEEecCCe-EEEEecC
Confidence 5 555555543 3444 7887664
No 265
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.50 E-value=2.5e-05 Score=94.02 Aligned_cols=286 Identities=16% Similarity=0.077 Sum_probs=149.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEeccCc---------cceEEeccccceeEecccccC--------C--Ccccccc
Q 000685 23 HPWLVTADASDHVSVWNWEHRQVIYELKAGGV---------DQRRLVGAKLEKLAEGELEHK--------G--KPTEAMR 83 (1352)
Q Consensus 23 g~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~---------~~i~~vs~dg~~Lasgs~d~~--------g--~~l~~l~ 83 (1352)
+..+++++.+|.|.-+|..+|+.+.++..... +.+++...++...+.-..++. + .+..++.
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~ 144 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVA 144 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEE
Confidence 56777788888888888888888877654321 111211233332222111110 0 0001111
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccccc-
Q 000685 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQE- 161 (1352)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~- 161 (1352)
++.+ -+...++.+..||..+++.+-...............+.... ++ .++.+..++.+ .+|..+++..-.....
T Consensus 145 ~~~v-~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~--~v~~~~~~g~v~ald~~tG~~~W~~~~~~ 220 (377)
T TIGR03300 145 NGLV-VVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DG--GVLVGFAGGKLVALDLQTGQPLWEQRVAL 220 (377)
T ss_pred CCEE-EEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CC--EEEEECCCCEEEEEEccCCCEeeeecccc
Confidence 2222 12226788999998887654211000000000000111111 23 45556555555 6688877542110000
Q ss_pred cCC-C---CeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCC
Q 000685 162 LDN-K---SLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDG 237 (1352)
Q Consensus 162 ~h~-~---~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DG 237 (1352)
... . ....+.-.| .-.+..++.++.+|.+..||.++++.+.... .... .. ....+..++.++.||
T Consensus 221 ~~g~~~~~~~~~~~~~p---~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~--~~~~-~~-----p~~~~~~vyv~~~~G 289 (377)
T TIGR03300 221 PKGRTELERLVDVDGDP---VVDGGQVYAVSYQGRVAALDLRSGRVLWKRD--ASSY-QG-----PAVDDNRLYVTDADG 289 (377)
T ss_pred CCCCCchhhhhccCCcc---EEECCEEEEEEcCCEEEEEECCCCcEEEeec--cCCc-cC-----ceEeCCEEEEECCCC
Confidence 000 0 000110001 0135678888899999999999998776553 1111 11 112466788888999
Q ss_pred cEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCce
Q 000685 238 LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVAS 317 (1352)
Q Consensus 238 tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V 317 (1352)
.|..+|..+++.+.+.. .+.+ ....+... .+..|++++.||.|++||..+|+.+.+++ .+...+
T Consensus 290 ~l~~~d~~tG~~~W~~~---~~~~--~~~ssp~i-----~g~~l~~~~~~G~l~~~d~~tG~~~~~~~------~~~~~~ 353 (377)
T TIGR03300 290 VVVALDRRSGSELWKND---ELKY--RQLTAPAV-----VGGYLVVGDFEGYLHWLSREDGSFVARLK------TDGSGI 353 (377)
T ss_pred eEEEEECCCCcEEEccc---cccC--CccccCEE-----ECCEEEEEeCCCEEEEEECCCCCEEEEEE------cCCCcc
Confidence 99999999987654310 1111 11112222 24688899999999999999999887743 333333
Q ss_pred eEEEeCCCCCEEEEecCCeEEe
Q 000685 318 WCHPRAPNLDILTCVKDSHIWA 339 (1352)
Q Consensus 318 ~svafspdg~lLS~s~Dg~IWD 339 (1352)
+......++.++.++.||+|+-
T Consensus 354 ~~sp~~~~~~l~v~~~dG~l~~ 375 (377)
T TIGR03300 354 ASPPVVVGDGLLVQTRDGDLYA 375 (377)
T ss_pred ccCCEEECCEEEEEeCCceEEE
Confidence 3333333566888889998754
No 266
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.48 E-value=1.5e-06 Score=99.65 Aligned_cols=84 Identities=23% Similarity=0.251 Sum_probs=72.9
Q ss_pred cccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcE
Q 000685 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1352)
Q Consensus 160 ~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtV 239 (1352)
.-+|-..++.++| ++|+++|+++..|..||+-....-..+..+.-||+..|..++. -++..|+|||.|++|
T Consensus 147 ~lGhvSml~dVav-----S~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl----~~~~~LlS~sGD~tl 217 (390)
T KOG3914|consen 147 ILGHVSMLLDVAV-----SPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISL----TDNYLLLSGSGDKTL 217 (390)
T ss_pred hhhhhhhhheeee-----cCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeee----ccCceeeecCCCCcE
Confidence 4688999999999 7899999999999999998887666677776699999999972 356679999999999
Q ss_pred EEEeCCCCCccce
Q 000685 240 ILWSADHGQDSRE 252 (1352)
Q Consensus 240 rVWDl~tg~~~~~ 252 (1352)
++||+.+|+++.+
T Consensus 218 r~Wd~~sgk~L~t 230 (390)
T KOG3914|consen 218 RLWDITSGKLLDT 230 (390)
T ss_pred EEEecccCCcccc
Confidence 9999999998754
No 267
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.43 E-value=2.1e-05 Score=95.82 Aligned_cols=197 Identities=19% Similarity=0.123 Sum_probs=122.2
Q ss_pred CeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEec-C---cEEEEEeeCCccccccccccCCCCeEEE
Q 000685 95 DDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCV-N---KAIFLDLVTMRGRDIPKQELDNKSLVCM 170 (1352)
Q Consensus 95 g~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~-D---~~I~wDl~t~~~~~i~~~~~h~~~V~~v 170 (1352)
..|.++|...... .....+ ...+.+..|+|+|+ .|+.++. + .+.+||+.+++...+ ..+...+.++
T Consensus 170 ~~l~~~d~~g~~~-----~~l~~~-~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~~~~~---~~~~~~~~~~ 239 (417)
T TIGR02800 170 YELQVADYDGANP-----QTITRS-REPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQREKV---ASFPGMNGAP 239 (417)
T ss_pred ceEEEEcCCCCCC-----EEeecC-CCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCCEEEe---ecCCCCccce
Confidence 3577777654322 112222 44678889999998 4554443 2 234668887754332 2334456678
Q ss_pred EEeeccccCCCCEEEEE-ECCC--cEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeC-CC--cEEEEeC
Q 000685 171 EFLSRSAVGDVPLVAFG-SSDG--VIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS-DG--LLILWSA 244 (1352)
Q Consensus 171 af~P~s~Spdg~~LasG-s~DG--tIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~-DG--tVrVWDl 244 (1352)
.| +|+|+.|+.. +.++ .|.+||+.++... .+. .|........ ++++++.|+..+. ++ .|.+||+
T Consensus 240 ~~-----spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~-~~~~~~~~~~---~s~dg~~l~~~s~~~g~~~iy~~d~ 309 (417)
T TIGR02800 240 AF-----SPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLT-NGPGIDTEPS---WSPDGKSIAFTSDRGGSPQIYMMDA 309 (417)
T ss_pred EE-----CCCCCEEEEEECCCCCccEEEEECCCCCEE-ECC-CCCCCCCCEE---ECCCCCEEEEEECCCCCceEEEEEC
Confidence 88 7899877654 4444 5888999877553 333 4444444555 5789988876654 33 5777787
Q ss_pred CCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCC---cEEEEECCCCeEEEEecCCCcccccCCceeEEE
Q 000685 245 DHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADK---TLAIWDTVSFKELRRIKPVPKLACHSVASWCHP 321 (1352)
Q Consensus 245 ~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~Dg---tV~IWDl~tg~~l~~~~~~~~l~~hs~~V~sva 321 (1352)
.+++... +..+...+....|+| ++++|+.++.++ .|.+||+.++.. +.+ ..+ .......
T Consensus 310 ~~~~~~~-------l~~~~~~~~~~~~sp---dg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l------~~~-~~~~~p~ 371 (417)
T TIGR02800 310 DGGEVRR-------LTFRGGYNASPSWSP---DGDLIAFVHREGGGFNIAVMDLDGGGE-RVL------TDT-GLDESPS 371 (417)
T ss_pred CCCCEEE-------eecCCCCccCeEECC---CCCEEEEEEccCCceEEEEEeCCCCCe-EEc------cCC-CCCCCce
Confidence 7654221 233445567789999 788888888776 789999887653 221 111 1123567
Q ss_pred eCCCCCEE
Q 000685 322 RAPNLDIL 329 (1352)
Q Consensus 322 fspdg~lL 329 (1352)
|+|++..|
T Consensus 372 ~spdg~~l 379 (417)
T TIGR02800 372 FAPNGRMI 379 (417)
T ss_pred ECCCCCEE
Confidence 99999855
No 268
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.42 E-value=0.00065 Score=77.89 Aligned_cols=183 Identities=10% Similarity=0.050 Sum_probs=115.5
Q ss_pred cCcEEEEEee--CCccccccccccCCCCeEEEEEeeccccCCCCEEEEEEC---CCcEEEEECCC--CeEE--EEEecCC
Q 000685 141 VNKAIFLDLV--TMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS---DGVIRVLSMIS--WKLV--RRYTGGH 211 (1352)
Q Consensus 141 ~D~~I~wDl~--t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~---DGtIrIWDl~t--~~~i--~~l~~gH 211 (1352)
..++.+|++. +++.. ......+...++-|+| +++++.|.++.. +|.|.-|.+.. |++. .... .-
T Consensus 15 s~gI~v~~ld~~~g~l~-~~~~v~~~~nptyl~~-----~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~-~~ 87 (346)
T COG2706 15 SQGIYVFNLDTKTGELS-LLQLVAELGNPTYLAV-----NPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT-LP 87 (346)
T ss_pred CCceEEEEEeCcccccc-hhhhccccCCCceEEE-----CCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc-cC
Confidence 5677788665 33332 2233456677888999 778988888865 46777777664 5442 2111 11
Q ss_pred CCCeeEEEEeeeCCCCCEEEEEeC-CCcEEEEeCCCCCccceecccccccccccc----------eEEEEeeccCCCCCE
Q 000685 212 KGSISCLMTFMASSGEALLVSGGS-DGLLILWSADHGQDSRELVPKLSLKAHDGG----------VVAVELSRVMGGSPQ 280 (1352)
Q Consensus 212 ~~~V~slawf~~s~dg~~LaSgS~-DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~----------V~slafsp~~~dg~~ 280 (1352)
..+-+.++ .++++++++++.. -|.|.++-++..-.+.. ...+..|.+. +.+..+.| ++++
T Consensus 88 g~~p~yvs---vd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~---~v~~~~h~g~~p~~rQ~~~h~H~a~~tP---~~~~ 158 (346)
T COG2706 88 GSPPCYVS---VDEDGRFVFVANYHSGSVSVYPLQADGSLQP---VVQVVKHTGSGPHERQESPHVHSANFTP---DGRY 158 (346)
T ss_pred CCCCeEEE---ECCCCCEEEEEEccCceEEEEEcccCCcccc---ceeeeecCCCCCCccccCCccceeeeCC---CCCE
Confidence 22224554 7999999988875 68899999966322221 1122334444 78889999 7888
Q ss_pred EEEEEC-CCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEE--EEecCCe--EEeccC
Q 000685 281 LITIGA-DKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL--TCVKDSH--IWAIEH 342 (1352)
Q Consensus 281 LaSgs~-DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lL--S~s~Dg~--IWDi~t 342 (1352)
|++... --+|.+|++..|.....- .. .+ .-...-+.+.|+|+++++ .+=-+++ +|.++.
T Consensus 159 l~v~DLG~Dri~~y~~~dg~L~~~~-~~-~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~ 222 (346)
T COG2706 159 LVVPDLGTDRIFLYDLDDGKLTPAD-PA-EV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP 222 (346)
T ss_pred EEEeecCCceEEEEEcccCcccccc-cc-cc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence 888764 357899999987643321 11 11 222344689999999965 4545565 788875
No 269
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.40 E-value=0.00018 Score=86.64 Aligned_cols=216 Identities=13% Similarity=0.003 Sum_probs=114.0
Q ss_pred cCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEEEeeCCccccccccccCCCCe-----
Q 000685 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSL----- 167 (1352)
Q Consensus 93 ~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl~t~~~~~i~~~~~h~~~V----- 167 (1352)
.++.+..+|..+++.+-. ... ...+.+.-...++ .+++...++.+..||..+++..-. .......+
T Consensus 113 ~~g~l~ald~~tG~~~W~---~~~---~~~~~~~p~v~~~-~v~v~~~~g~l~a~d~~tG~~~W~--~~~~~~~~~~~~~ 183 (377)
T TIGR03300 113 EKGEVIALDAEDGKELWR---AKL---SSEVLSPPLVANG-LVVVRTNDGRLTALDAATGERLWT--YSRVTPALTLRGS 183 (377)
T ss_pred CCCEEEEEECCCCcEeee---ecc---CceeecCCEEECC-EEEEECCCCeEEEEEcCCCceeeE--EccCCCceeecCC
Confidence 578888888888766421 111 1111111111133 244433333445778888764211 11111111
Q ss_pred EEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCC---CeeEEEEeeeC--CCCCEEEEEeCCCcEEEE
Q 000685 168 VCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKG---SISCLMTFMAS--SGEALLVSGGSDGLLILW 242 (1352)
Q Consensus 168 ~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~---~V~slawf~~s--~dg~~LaSgS~DGtVrVW 242 (1352)
.+... .+..++.++.+|.+..+|.++++.+.....+... .+..+..+..+ -.+..++.++.+|.+..|
T Consensus 184 ~sp~~-------~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~ 256 (377)
T TIGR03300 184 ASPVI-------ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAAL 256 (377)
T ss_pred CCCEE-------ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEE
Confidence 11112 1347788888999999999998776543211110 00000000001 135577888899999999
Q ss_pred eCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEe
Q 000685 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPR 322 (1352)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svaf 322 (1352)
|..+++.+.... ... ...... .+..++.++.||.|..+|..+|+.+..... +.+. ...+...
T Consensus 257 d~~tG~~~W~~~----~~~----~~~p~~-----~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~---~~~~--~~ssp~i 318 (377)
T TIGR03300 257 DLRSGRVLWKRD----ASS----YQGPAV-----DDNRLYVTDADGVVVALDRRSGSELWKNDE---LKYR--QLTAPAV 318 (377)
T ss_pred ECCCCcEEEeec----cCC----ccCceE-----eCCEEEEECCCCeEEEEECCCCcEEEcccc---ccCC--ccccCEE
Confidence 999987654321 111 111222 346778888999999999999987765321 1111 1111111
Q ss_pred CCCCCEEEEecCCe--EEeccCC
Q 000685 323 APNLDILTCVKDSH--IWAIEHP 343 (1352)
Q Consensus 323 spdg~lLS~s~Dg~--IWDi~t~ 343 (1352)
-++.+++++.+|. +||..++
T Consensus 319 -~g~~l~~~~~~G~l~~~d~~tG 340 (377)
T TIGR03300 319 -VGGYLVVGDFEGYLHWLSREDG 340 (377)
T ss_pred -ECCEEEEEeCCCEEEEEECCCC
Confidence 1345667888887 4665544
No 270
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.40 E-value=9.3e-07 Score=99.12 Aligned_cols=169 Identities=15% Similarity=0.159 Sum_probs=119.7
Q ss_pred EEEEecCcEEEEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCC-----eEEEEEecC
Q 000685 136 LVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-----KLVRRYTGG 210 (1352)
Q Consensus 136 Lasgs~D~~I~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~-----~~i~~l~~g 210 (1352)
+.+|.+.++...|..++.... ....+.|.++.| ...++++..|+.+|.|..+|++.+ .+...+.
T Consensus 228 fs~G~sqqv~L~nvetg~~qs----f~sksDVfAlQf-----~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-- 296 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQS----FQSKSDVFALQF-----AGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-- 296 (425)
T ss_pred ecccccceeEEEEeecccccc----cccchhHHHHHh-----cccCCeeEecccCCcEEEEEeeecccCCCcceEEEE--
Confidence 456666666677999875432 235677888889 456889999999999999999853 4555664
Q ss_pred CCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcE
Q 000685 211 HKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTL 290 (1352)
Q Consensus 211 H~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV 290 (1352)
|...|+|+. ...-+++.|++.+.+|+|++||++--++-.. ..++.||-..-..+-++-. +....++++|+|...
T Consensus 297 h~Ssvtslq--~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~---V~qYeGHvN~~a~l~~~v~-~eeg~I~s~GdDcyt 370 (425)
T KOG2695|consen 297 HDSSVTSLQ--ILQFSQQKLMASDMTGKIKLYDLRATKCKKS---VMQYEGHVNLSAYLPAHVK-EEEGSIFSVGDDCYT 370 (425)
T ss_pred cCcchhhhh--hhccccceEeeccCcCceeEeeehhhhcccc---eeeeecccccccccccccc-cccceEEEccCeeEE
Confidence 999999998 2444788999999999999999997665221 2346888444333333321 255688889999999
Q ss_pred EEEECCCCeEEEEecCCCcccccCCceeEEEeC
Q 000685 291 AIWDTVSFKELRRIKPVPKLACHSVASWCHPRA 323 (1352)
Q Consensus 291 ~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafs 323 (1352)
|||.++.|..+.++.... ......+++++|.
T Consensus 371 RiWsl~~ghLl~tipf~~--s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 371 RIWSLDSGHLLCTIPFPY--SASEVDIPSVAFD 401 (425)
T ss_pred EEEecccCceeeccCCCC--ccccccccceehh
Confidence 999999999988854321 2223344555554
No 271
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.39 E-value=1e-06 Score=106.07 Aligned_cols=259 Identities=14% Similarity=0.174 Sum_probs=170.6
Q ss_pred CCCeeeeeecCCCCeEEEEEecCcEEEEEeeCCccccccccccC--CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEE
Q 000685 120 TSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELD--NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLS 197 (1352)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~D~~I~wDl~t~~~~~i~~~~~h--~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWD 197 (1352)
...+..+..+|.|+ -++.++.-+.+++|+...-.. +....| .-.|-.+.|+| ++.-.+-++......-.+|+
T Consensus 24 ~~~~~a~si~p~gr-di~lAsr~gl~i~dld~p~~p--pr~l~h~tpw~vad~qws~---h~a~~~wiVsts~qkaiiwn 97 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGR-DIVLASRQGLYIIDLDDPFTP--PRWLHHITPWQVADVQWSP---HPAKPYWIVSTSNQKAIIWN 97 (1081)
T ss_pred cCcccceeeccccc-hhhhhhhcCeEEEeccCCCCC--ceeeeccCcchhcceeccc---CCCCceeEEecCcchhhhhh
Confidence 45677788899997 778888888888877643211 112223 33567788976 34444544455555666999
Q ss_pred CC--CCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccC
Q 000685 198 MI--SWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVM 275 (1352)
Q Consensus 198 l~--t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~ 275 (1352)
+. +.+.+.-+..||...|+.+-| .......+++++.|-.|..||+++... +.+.+..-...-..|.|+-
T Consensus 98 lA~ss~~aIef~lhghsraitd~n~--~~q~pdVlatcsvdt~vh~wd~rSp~~-----p~ys~~~w~s~asqVkwny-- 168 (1081)
T KOG0309|consen 98 LAKSSSNAIEFVLHGHSRAITDINF--NPQHPDVLATCSVDTYVHAWDMRSPHR-----PFYSTSSWRSAASQVKWNY-- 168 (1081)
T ss_pred hhcCCccceEEEEecCccceecccc--CCCCCcceeeccccccceeeeccCCCc-----ceeeeecccccCceeeecc--
Confidence 85 334444445699999999974 455677999999999999999997642 2233333445567788987
Q ss_pred CCCCEEEEEECCCcEEEEECCCCe-EEEEecCCCcccccCCceeEEEeCCC--CCEEEEecCCe--EEeccCCcccc---
Q 000685 276 GGSPQLITIGADKTLAIWDTVSFK-ELRRIKPVPKLACHSVASWCHPRAPN--LDILTCVKDSH--IWAIEHPTYSA--- 347 (1352)
Q Consensus 276 ~dg~~LaSgs~DgtV~IWDl~tg~-~l~~~~~~~~l~~hs~~V~svafspd--g~lLS~s~Dg~--IWDi~t~~~~~--- 347 (1352)
....+...+..+.|++||.+.|. .+.. +.+|...|..+.|..- +.+++++.|++ .||..+.+...
T Consensus 169 -k~p~vlasshg~~i~vwd~r~gs~pl~s------~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~ 241 (1081)
T KOG0309|consen 169 -KDPNVLASSHGNDIFVWDLRKGSTPLCS------LKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT 241 (1081)
T ss_pred -cCcchhhhccCCceEEEeccCCCcceEE------ecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee
Confidence 33455556778899999998775 3333 5678888888888764 55779999996 69887543210
Q ss_pred cc----------cCcc---------------------------ccCCCCCCeEEecCCcccEEEEEEecC---------C
Q 000685 348 LT----------RPLC---------------------------ELSSLVPPQVLAHHKKLRVYCMVAHSL---------Q 381 (1352)
Q Consensus 348 ~~----------~~l~---------------------------~~~~~~~~~~l~~h~~~~V~~la~sp~---------~ 381 (1352)
.. .+++ ......++..|.+|.+ .|....|-.. .
T Consensus 242 vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D-~V~eFlWR~r~e~~~d~d~r 320 (1081)
T KOG0309|consen 242 VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD-VVLEFLWRKRKECDGDYDSR 320 (1081)
T ss_pred ccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcch-HHHHHhhhhcccccCCCCcc
Confidence 00 0000 0124456677777776 5554444331 2
Q ss_pred CcEEEEEECCCeEEEEecCCC
Q 000685 382 PHLVATGTNVGVIISEFDPRS 402 (1352)
Q Consensus 382 ~~lLatGs~DG~IlriWd~~~ 402 (1352)
.+.|+|.+.|..+ |+|-+..
T Consensus 321 dfQLVTWSkD~~l-rlWpI~~ 340 (1081)
T KOG0309|consen 321 DFQLVTWSKDQTL-RLWPIDS 340 (1081)
T ss_pred ceeEEEeecCCce-EeeeccH
Confidence 3678899999886 8997654
No 272
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.39 E-value=4.6e-06 Score=93.75 Aligned_cols=82 Identities=20% Similarity=0.295 Sum_probs=68.0
Q ss_pred cccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeC
Q 000685 156 DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS 235 (1352)
Q Consensus 156 ~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~ 235 (1352)
.+.+..+|.+.+.|+.| .+...++.+|..|..|.+||+..++-+.....+|.+.|..+. .-+--..+.+++.
T Consensus 189 ~i~~~~~h~~~~~~l~W-----d~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~---~~~~t~~l~S~~e 260 (404)
T KOG1409|consen 189 LITTFNGHTGEVTCLKW-----DPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALS---YAQHTRQLISCGE 260 (404)
T ss_pred eEEEEcCcccceEEEEE-----cCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhh---hhhhheeeeeccC
Confidence 45567889999999999 667889999999999999999766554444449999999995 4555678999999
Q ss_pred CCcEEEEeCC
Q 000685 236 DGLLILWSAD 245 (1352)
Q Consensus 236 DGtVrVWDl~ 245 (1352)
||.|.+||++
T Consensus 261 dg~i~~w~mn 270 (404)
T KOG1409|consen 261 DGGIVVWNMN 270 (404)
T ss_pred CCeEEEEecc
Confidence 9999999985
No 273
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.39 E-value=6.3e-05 Score=92.23 Aligned_cols=159 Identities=16% Similarity=0.087 Sum_probs=94.7
Q ss_pred eeeeeecCCCCeEEEEEecCc---EE--EEEeeCC---ccccccccccCCCCeEEEEEeeccccCCCCEEEEEE-CCCcE
Q 000685 123 FASPPPSTKGRHFLVICCVNK---AI--FLDLVTM---RGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGS-SDGVI 193 (1352)
Q Consensus 123 V~slafspdg~~lLasgs~D~---~I--~wDl~t~---~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs-~DGtI 193 (1352)
.....|+|||+.++.+...++ +. .|++..+ ..+.+ ...+........| +|||+.|+..+ .+|..
T Consensus 233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~l--t~~~~~~~~~p~w-----SPDG~~Laf~s~~~g~~ 305 (428)
T PRK01029 233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRL--LNEAFGTQGNPSF-----SPDGTRLVFVSNKDGRP 305 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEe--ecCCCCCcCCeEE-----CCCCCEEEEEECCCCCc
Confidence 345789999985555443222 22 2455442 11111 1112233456788 88999888776 46655
Q ss_pred EEEE--CCC-CeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCC---CcEEEEeCCCCCccceecccccccccccceE
Q 000685 194 RVLS--MIS-WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSD---GLLILWSADHGQDSRELVPKLSLKAHDGGVV 267 (1352)
Q Consensus 194 rIWD--l~t-~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~D---GtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~ 267 (1352)
.||. +.. +.....+. .+...+.... ++|+|+.|+..+.+ ..|.+||+.+++... +......+.
T Consensus 306 ~ly~~~~~~~g~~~~~lt-~~~~~~~~p~---wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-------Lt~~~~~~~ 374 (428)
T PRK01029 306 RIYIMQIDPEGQSPRLLT-KKYRNSSCPA---WSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-------LTTSPENKE 374 (428)
T ss_pred eEEEEECcccccceEEec-cCCCCcccee---ECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-------ccCCCCCcc
Confidence 5654 432 23334444 4445666666 69999988876653 469999998876422 222233467
Q ss_pred EEEeeccCCCCCEEEEEEC---CCcEEEEECCCCeEEE
Q 000685 268 AVELSRVMGGSPQLITIGA---DKTLAIWDTVSFKELR 302 (1352)
Q Consensus 268 slafsp~~~dg~~LaSgs~---DgtV~IWDl~tg~~l~ 302 (1352)
...|+| |+++|+..+. +..|.+||+.+++..+
T Consensus 375 ~p~wSp---DG~~L~f~~~~~g~~~L~~vdl~~g~~~~ 409 (428)
T PRK01029 375 SPSWAI---DSLHLVYSAGNSNESELYLISLITKKTRK 409 (428)
T ss_pred ceEECC---CCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 789999 7777764433 3568888988776543
No 274
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.37 E-value=4.9e-05 Score=93.28 Aligned_cols=197 Identities=19% Similarity=0.148 Sum_probs=117.9
Q ss_pred eEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecC---cEEEEEeeCCccccccccccCCCCeEEEEE
Q 000685 96 DVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVN---KAIFLDLVTMRGRDIPKQELDNKSLVCMEF 172 (1352)
Q Consensus 96 ~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D---~~I~wDl~t~~~~~i~~~~~h~~~V~~vaf 172 (1352)
.|.++|....... ....+ ...+....|+|||+.++.+...+ .+.++|+.+++...+... ...+....|
T Consensus 180 ~l~~~d~~g~~~~-----~l~~~-~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~---~g~~~~~~~ 250 (430)
T PRK00178 180 TLQRSDYDGARAV-----TLLQS-REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF---EGLNGAPAW 250 (430)
T ss_pred EEEEECCCCCCce-----EEecC-CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC---CCCcCCeEE
Confidence 4666676654321 11222 45688899999998444444332 233668888765444222 234456788
Q ss_pred eeccccCCCCEEEE-EECCC--cEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeC-CC--cEEEEeCCC
Q 000685 173 LSRSAVGDVPLVAF-GSSDG--VIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS-DG--LLILWSADH 246 (1352)
Q Consensus 173 ~P~s~Spdg~~Las-Gs~DG--tIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~-DG--tVrVWDl~t 246 (1352)
+|+|+.|+. .+.+| .|.+||+.+++.. .+. .+........ ++++|+.|+..+. +| .|.+||+.+
T Consensus 251 -----SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt-~~~~~~~~~~---~spDg~~i~f~s~~~g~~~iy~~d~~~ 320 (430)
T PRK00178 251 -----SPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVT-NHPAIDTEPF---WGKDGRTLYFTSDRGGKPQIYKVNVNG 320 (430)
T ss_pred -----CCCCCEEEEEEccCCCceEEEEECCCCCeE-Ecc-cCCCCcCCeE---ECCCCCEEEEEECCCCCceEEEEECCC
Confidence 789988874 44455 5888899887654 343 4444455554 6899988776554 33 577778877
Q ss_pred CCccceecccccccccccceEEEEeeccCCCCCEEEEEECC-C--cEEEEECCCCeEEEEecCCCcccccCCceeEEEeC
Q 000685 247 GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGAD-K--TLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRA 323 (1352)
Q Consensus 247 g~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~D-g--tV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafs 323 (1352)
++... + +..+ .......|+| ++++|+..+.+ + .|.+||+.+++. +.+.. ........|+
T Consensus 321 g~~~~-l----t~~~--~~~~~~~~Sp---dg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~-------~~~~~~p~~s 382 (430)
T PRK00178 321 GRAER-V----TFVG--NYNARPRLSA---DGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTD-------TSLDESPSVA 382 (430)
T ss_pred CCEEE-e----ecCC--CCccceEECC---CCCEEEEEEccCCceEEEEEECCCCCE-EEccC-------CCCCCCceEC
Confidence 65321 1 1122 2234568999 77888766643 3 588899988764 33211 1111245899
Q ss_pred CCCCEE
Q 000685 324 PNLDIL 329 (1352)
Q Consensus 324 pdg~lL 329 (1352)
|||+.+
T Consensus 383 pdg~~i 388 (430)
T PRK00178 383 PNGTML 388 (430)
T ss_pred CCCCEE
Confidence 999966
No 275
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.37 E-value=1.1e-06 Score=114.44 Aligned_cols=196 Identities=17% Similarity=0.245 Sum_probs=147.3
Q ss_pred cCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEE
Q 000685 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1352)
Q Consensus 162 ~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrV 241 (1352)
.+-..|.++.- +|...+.++|+.||.|++|.+..++.+..+..+....|+.+. |+..|+.+..+..||.+.+
T Consensus 2206 ~~v~~v~r~~s-----Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~---f~~qGnk~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2206 HPVENVRRMTS-----HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSR---FNHQGNKFGIVDGDGDLSL 2277 (2439)
T ss_pred cccCceeeecC-----CCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhh---hcccCCceeeeccCCceee
Confidence 34567778877 456789999999999999999998888877655558888886 7889999999999999999
Q ss_pred EeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEE---CCCcEEEEECCCCeEEEEecCCCcccccCCcee
Q 000685 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIG---ADKTLAIWDTVSFKELRRIKPVPKLACHSVASW 318 (1352)
Q Consensus 242 WDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs---~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~ 318 (1352)
|.... .+....+.|+.......|-- ..+++++ +++.+.+||..-.....- + ..+|...++
T Consensus 2278 ~q~~p-------k~~~s~qchnk~~~Df~Fi~-----s~~~tag~s~d~~n~~lwDtl~~~~~s~---v--~~~H~~gaT 2340 (2439)
T KOG1064|consen 2278 WQASP-------KPYTSWQCHNKALSDFRFIG-----SLLATAGRSSDNRNVCLWDTLLPPMNSL---V--HTCHDGGAT 2340 (2439)
T ss_pred cccCC-------cceeccccCCccccceeeee-----hhhhccccCCCCCcccchhcccCcccce---e--eeecCCCce
Confidence 99872 24455788999888888863 5777765 578999999652211110 1 168999999
Q ss_pred EEEeCCCCCE-EEEecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEE
Q 000685 319 CHPRAPNLDI-LTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVII 395 (1352)
Q Consensus 319 svafspdg~l-LS~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~Il 395 (1352)
++++-|..++ ++||.+|. |||++.+.. ..++. . ++ ...++.+|+..|.+
T Consensus 2341 ~l~~~P~~qllisggr~G~v~l~D~rqrql---------------~h~~~------~----~~--~~~~f~~~ss~g~i- 2392 (2439)
T KOG1064|consen 2341 VLAYAPKHQLLISGGRKGEVCLFDIRQRQL---------------RHTFQ------A----LD--TREYFVTGSSEGNI- 2392 (2439)
T ss_pred EEEEcCcceEEEecCCcCcEEEeehHHHHH---------------HHHhh------h----hh--hhheeeccCcccce-
Confidence 9999999884 59999995 899985421 11111 1 23 35679999999997
Q ss_pred EEecCCCCCCccccC
Q 000685 396 SEFDPRSLPAVAPLP 410 (1352)
Q Consensus 396 riWd~~~~p~i~~l~ 410 (1352)
+||+......+.++|
T Consensus 2393 kIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2393 KIWRLSEFGLLHTFP 2407 (2439)
T ss_pred EEEEccccchhhcCc
Confidence 999988765555544
No 276
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.35 E-value=4e-06 Score=96.30 Aligned_cols=161 Identities=18% Similarity=0.151 Sum_probs=108.9
Q ss_pred eeeeeecCCCCeEEEEEecCcEE-EEEeeCCcc--ccccccccCCCCeEEEEEeeccccCCCCEEEE---EECCCcEEEE
Q 000685 123 FASPPPSTKGRHFLVICCVNKAI-FLDLVTMRG--RDIPKQELDNKSLVCMEFLSRSAVGDVPLVAF---GSSDGVIRVL 196 (1352)
Q Consensus 123 V~slafspdg~~lLasgs~D~~I-~wDl~t~~~--~~i~~~~~h~~~V~~vaf~P~s~Spdg~~Las---Gs~DGtIrIW 196 (1352)
...+..+++++ +++++..+... ++++..... +.+... .-...-+.+.|. .+...+.. .++...+.+|
T Consensus 65 ~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~-----~~~~sv~v~dkagD~~~~di~ 137 (390)
T KOG3914|consen 65 PALVLTSDSGR-LVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFI-----REDTSVLVADKAGDVYSFDIL 137 (390)
T ss_pred ccccccCCCce-EEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeee-----eccceEEEEeecCCceeeeee
Confidence 34455677776 66666655554 556654321 111111 112223334442 22333333 3455566677
Q ss_pred ECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCC
Q 000685 197 SMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMG 276 (1352)
Q Consensus 197 Dl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~ 276 (1352)
....+.+... . ||-..+..++ +++|+++|+++..|..||+-.......+..| .-||..-|..++..+
T Consensus 138 s~~~~~~~~~-l-GhvSml~dVa---vS~D~~~IitaDRDEkIRvs~ypa~f~Iesf-----clGH~eFVS~isl~~--- 204 (390)
T KOG3914|consen 138 SADSGRCEPI-L-GHVSMLLDVA---VSPDDQFIITADRDEKIRVSRYPATFVIESF-----CLGHKEFVSTISLTD--- 204 (390)
T ss_pred cccccCcchh-h-hhhhhhheee---ecCCCCEEEEecCCceEEEEecCcccchhhh-----ccccHhheeeeeecc---
Confidence 6665555433 3 9999999998 7999999999999999999888766555443 578999999999986
Q ss_pred CCCEEEEEECCCcEEEEECCCCeEEEEe
Q 000685 277 GSPQLITIGADKTLAIWDTVSFKELRRI 304 (1352)
Q Consensus 277 dg~~LaSgs~DgtV~IWDl~tg~~l~~~ 304 (1352)
+..|+|+|.|++|++||+.+|++++++
T Consensus 205 -~~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 205 -NYLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred -CceeeecCCCCcEEEEecccCCccccc
Confidence 567999999999999999999998765
No 277
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=0.00012 Score=87.42 Aligned_cols=261 Identities=15% Similarity=0.152 Sum_probs=151.0
Q ss_pred CEEEEEEcCCCCEEEEE-----eC-----CCcEEEEECCCCcEEEEEeccCcc-ceEEeccccc---eeEecc-----cc
Q 000685 13 KIVKIQLHPTHPWLVTA-----DA-----SDHVSVWNWEHRQVIYELKAGGVD-QRRLVGAKLE---KLAEGE-----LE 73 (1352)
Q Consensus 13 ~V~~lafSPdg~~LaTg-----s~-----DG~VrVWDl~tg~~i~t~~~~~~~-~i~~vs~dg~---~Lasgs-----~d 73 (1352)
.++++.|||-|.+|.|= .. .-.+++|+++++.....++..... +....+.|.. ++++.+ .+
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~ 154 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLG 154 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecC
Confidence 78899999999998863 11 245779999996665555432211 1111111110 111110 00
Q ss_pred cCCCcccccc-----------CCceEEEEE-------cCCeEEEEEcCCccccccc-cccccccCCCCeeeeeecCCCCe
Q 000685 74 HKGKPTEAMR-----------GGSVKQVNF-------YDDDVRFWQLWRNRAAAAE-APTAVSNVTSGFASPPPSTKGRH 134 (1352)
Q Consensus 74 ~~g~~l~~l~-----------~g~V~sVaF-------~Dg~IrlWDl~t~~~i~~~-~~~~~~~~~~~V~slafspdg~~ 134 (1352)
.......-++ ++.-..|++ ....+|+|.+.....-... ..+.. ...=..+.|++.|..
T Consensus 155 ~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF---kadkvqm~WN~~gt~ 231 (566)
T KOG2315|consen 155 SFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF---KADKVQMKWNKLGTA 231 (566)
T ss_pred CccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc---ccceeEEEeccCCce
Confidence 0000111111 123334444 4467888887632221100 01111 122245778888877
Q ss_pred EEEEEecC--c---------EE-EEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEE--EECCCcEEEEECCC
Q 000685 135 FLVICCVN--K---------AI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAF--GSSDGVIRVLSMIS 200 (1352)
Q Consensus 135 lLasgs~D--~---------~I-~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~Las--Gs~DGtIrIWDl~t 200 (1352)
+|+..+.| . .+ .++.+ +.... ..-...++|.++.| +++++.+++ |-.-.++.|||++
T Consensus 232 LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~--V~L~k~GPVhdv~W-----~~s~~EF~VvyGfMPAkvtifnlr- 302 (566)
T KOG2315|consen 232 LLVLASTDVDKTNASYYGEQTLYLLATQ-GESVS--VPLLKEGPVHDVTW-----SPSGREFAVVYGFMPAKVTIFNLR- 302 (566)
T ss_pred EEEEEEEeecCCCccccccceEEEEEec-CceEE--EecCCCCCceEEEE-----CCCCCEEEEEEecccceEEEEcCC-
Confidence 77666432 1 22 33554 22111 12334789999999 667766544 5567789999987
Q ss_pred CeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeC---CCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCC
Q 000685 201 WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS---DGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGG 277 (1352)
Q Consensus 201 ~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~---DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~d 277 (1352)
+..+..+. .++-+++- |+|.|++|+.++- -|.|-|||+.+.+++..+ ..- .-+-+.|+| |
T Consensus 303 ~~~v~df~---egpRN~~~---fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~------~a~--~tt~~eW~P---d 365 (566)
T KOG2315|consen 303 GKPVFDFP---EGPRNTAF---FNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF------KAA--NTTVFEWSP---D 365 (566)
T ss_pred CCEeEeCC---CCCccceE---ECCCCCEEEEeecCCCCCceEEEeccchhhcccc------ccC--CceEEEEcC---C
Confidence 56666653 34445552 7999999998876 488999999997766542 322 234579999 8
Q ss_pred CCEEEEEEC------CCcEEEEECCCCeEEEE
Q 000685 278 SPQLITIGA------DKTLAIWDTVSFKELRR 303 (1352)
Q Consensus 278 g~~LaSgs~------DgtV~IWDl~tg~~l~~ 303 (1352)
|.+|+|+.. |+.++||++. |..+..
T Consensus 366 Ge~flTATTaPRlrvdNg~Kiwhyt-G~~l~~ 396 (566)
T KOG2315|consen 366 GEYFLTATTAPRLRVDNGIKIWHYT-GSLLHE 396 (566)
T ss_pred CcEEEEEeccccEEecCCeEEEEec-Cceeeh
Confidence 999998875 7889999976 555443
No 278
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.33 E-value=7e-05 Score=91.82 Aligned_cols=182 Identities=18% Similarity=0.112 Sum_probs=107.7
Q ss_pred CCeeeeeecCCCCeE--EEEEecCc---EEEEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEEC-----C
Q 000685 121 SGFASPPPSTKGRHF--LVICCVNK---AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS-----D 190 (1352)
Q Consensus 121 ~~V~slafspdg~~l--Lasgs~D~---~I~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~-----D 190 (1352)
....+-.|+|||+.+ +.+...++ +.+.++.+++.+.+... ........| ||||+.|+..+. |
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~---~g~~~~p~w-----SPDG~~Laf~s~~~g~~d 256 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL---QGNQLMPTF-----SPRKKLLAFISDRYGNPD 256 (428)
T ss_pred CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC---CCCccceEE-----CCCCCEEEEEECCCCCcc
Confidence 345677899999752 22333332 22448887765554332 233345678 889998887653 2
Q ss_pred CcEEEEECCCC--eEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEe-CCCcEEEEeC--CC-CCccceeccccccccccc
Q 000685 191 GVIRVLSMISW--KLVRRYTGGHKGSISCLMTFMASSGEALLVSGG-SDGLLILWSA--DH-GQDSRELVPKLSLKAHDG 264 (1352)
Q Consensus 191 GtIrIWDl~t~--~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS-~DGtVrVWDl--~t-g~~~~~~~~~~~l~gH~~ 264 (1352)
..+.+|++.++ .....+..++.......+ ++|||+.|+..+ .+|...+|.+ .. +.... .+..+..
T Consensus 257 i~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~---wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~------~lt~~~~ 327 (428)
T PRK01029 257 LFIQSFSLETGAIGKPRRLLNEAFGTQGNPS---FSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR------LLTKKYR 327 (428)
T ss_pred eeEEEeecccCCCCcceEeecCCCCCcCCeE---ECCCCCEEEEEECCCCCceEEEEECcccccceE------EeccCCC
Confidence 23445777652 122333323333445555 699999877665 4676666654 32 11111 1333445
Q ss_pred ceEEEEeeccCCCCCEEEEEECC---CcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEE
Q 000685 265 GVVAVELSRVMGGSPQLITIGAD---KTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL 329 (1352)
Q Consensus 265 ~V~slafsp~~~dg~~LaSgs~D---gtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lL 329 (1352)
.+....|+| |++.|+..+.+ ..|.+||+.+++.... ......+....|+|||+.|
T Consensus 328 ~~~~p~wSP---DG~~Laf~~~~~g~~~I~v~dl~~g~~~~L-------t~~~~~~~~p~wSpDG~~L 385 (428)
T PRK01029 328 NSSCPAWSP---DGKKIAFCSVIKGVRQICVYDLATGRDYQL-------TTSPENKESPSWAIDSLHL 385 (428)
T ss_pred CccceeECC---CCCEEEEEEcCCCCcEEEEEECCCCCeEEc-------cCCCCCccceEECCCCCEE
Confidence 567889999 78888766543 4699999998875332 2222345578999999855
No 279
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.32 E-value=0.00022 Score=84.18 Aligned_cols=292 Identities=11% Similarity=0.034 Sum_probs=167.0
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEe--ccccceeEecccccCCCccccccCCce
Q 000685 10 TNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV--GAKLEKLAEGELEHKGKPTEAMRGGSV 87 (1352)
Q Consensus 10 Hs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~v--s~dg~~Lasgs~d~~g~~l~~l~~g~V 87 (1352)
-.-.+..+.|||.|.+|++.. -..|.+|+...+..+..+. + ..+..+ +|.+++|.+=+..+...+-.
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~-~~~V~~~~g~~~~~l~~~~-~--~~V~~~~fSP~~kYL~tw~~~pi~~pe~------- 99 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEH-AAGVECWGGPSKAKLVRFR-H--PDVKYLDFSPNEKYLVTWSREPIIEPEI------- 99 (561)
T ss_pred cCcchhheeecCcchheehhh-ccceEEccccchhheeeee-c--CCceecccCcccceeeeeccCCccChhh-------
Confidence 455788999999999999874 4558899988776666665 2 234444 48999998865443211110
Q ss_pred EEEEE-cCCeEEEEEcCCccccccccccccccC-CCCee-eeeecCCCCeEEEEEecCcEEEEEeeCCccccccccccCC
Q 000685 88 KQVNF-YDDDVRFWQLWRNRAAAAEAPTAVSNV-TSGFA-SPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDN 164 (1352)
Q Consensus 88 ~sVaF-~Dg~IrlWDl~t~~~i~~~~~~~~~~~-~~~V~-slafspdg~~lLasgs~D~~I~wDl~t~~~~~i~~~~~h~ 164 (1352)
...-| .+..+.+||+.++..+. ...... ....+ -+.|+-+.. +++=-..+.+.+.++ +......+......
T Consensus 100 e~sp~~~~n~~~vwd~~sg~iv~----sf~~~~q~~~~Wp~~k~s~~D~-y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~ 173 (561)
T COG5354 100 EISPFTSKNNVFVWDIASGMIVF----SFNGISQPYLGWPVLKFSIDDK-YVARVVGSSLYIHEI-TDNIEEHPFKNLRP 173 (561)
T ss_pred ccCCccccCceeEEeccCceeEe----eccccCCcccccceeeeeecch-hhhhhccCeEEEEec-CCccccCchhhccc
Confidence 01111 45689999999987653 111110 11122 456777765 444444444555565 44433332233335
Q ss_pred CCeEEEEEeeccccCCCCEEEE-----EECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEE------
Q 000685 165 KSLVCMEFLSRSAVGDVPLVAF-----GSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSG------ 233 (1352)
Q Consensus 165 ~~V~~vaf~P~s~Spdg~~Las-----Gs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSg------ 233 (1352)
..|....|+|.. ++..|+. ++.+++++||.+..++.+.+-. -..-.-..+.| .+.|+.|+.-
T Consensus 174 ~gi~dFsisP~~---n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~-lfk~~~~qLkW---~~~g~~ll~l~~t~~k 246 (561)
T COG5354 174 VGILDFSISPEG---NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN-LFKVSGVQLKW---QVLGKYLLVLVMTHTK 246 (561)
T ss_pred cceeeEEecCCC---CCceEEEEccccCCCCcEEEEEEccCCCeeeeee-eEeecccEEEE---ecCCceEEEEEEEeee
Confidence 678888886532 3344443 4567899999998665543321 11111222333 4445444321
Q ss_pred e-----CCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCC
Q 000685 234 G-----SDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVP 308 (1352)
Q Consensus 234 S-----~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~ 308 (1352)
+ ....+.++++....+ . . .....++|...+|.|. .++--+++|-.+-.+.++|++.. ....+
T Consensus 247 snKsyfgesnLyl~~~~e~~i-~-----V-~~~~~~pVhdf~W~p~-S~~F~vi~g~~pa~~s~~~lr~N-l~~~~---- 313 (561)
T COG5354 247 SNKSYFGESNLYLLRITERSI-P-----V-EKDLKDPVHDFTWEPL-SSRFAVISGYMPASVSVFDLRGN-LRFYF---- 313 (561)
T ss_pred cccceeccceEEEEeeccccc-c-----e-eccccccceeeeeccc-CCceeEEecccccceeecccccc-eEEec----
Confidence 0 124567777763321 1 1 1255788999999993 12223445558899999998854 33332
Q ss_pred cccccCCceeEEEeCCCCCEE-EEecCCe-----EEeccC
Q 000685 309 KLACHSVASWCHPRAPNLDIL-TCVKDSH-----IWAIEH 342 (1352)
Q Consensus 309 ~l~~hs~~V~svafspdg~lL-S~s~Dg~-----IWDi~t 342 (1352)
....-..+.|+|.++++ .+|.|.. +||...
T Consensus 314 ----Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~ 349 (561)
T COG5354 314 ----PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG 349 (561)
T ss_pred ----CCcccccccccCcccEEEEecCCccccceEEeccCC
Confidence 12222367899998854 6776652 788764
No 280
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.32 E-value=0.00016 Score=97.42 Aligned_cols=167 Identities=9% Similarity=-0.033 Sum_probs=106.0
Q ss_pred eeeeeecCCCCeEEEEEecCcEE-EEEeeCCcccccc------ccc------cCCCCeEEEEEeeccccCCCCE-EEEEE
Q 000685 123 FASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIP------KQE------LDNKSLVCMEFLSRSAVGDVPL-VAFGS 188 (1352)
Q Consensus 123 V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~------~~~------~h~~~V~~vaf~P~s~Spdg~~-LasGs 188 (1352)
-+.++|+|++..++++.+.++.| +||..++....+. ... ........|+| ++++.. +++-+
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIav-----spdG~~LYVADs 759 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISL-----SPDLKELYIADS 759 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEE-----eCCCCEEEEEEC
Confidence 35789999554477777666666 5677665432110 000 01234567888 678874 45556
Q ss_pred CCCcEEEEECCCCeEEEEEe-----------cC-C--------CCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCC
Q 000685 189 SDGVIRVLSMISWKLVRRYT-----------GG-H--------KGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQ 248 (1352)
Q Consensus 189 ~DGtIrIWDl~t~~~i~~l~-----------~g-H--------~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~ 248 (1352)
.++.|++||+.++......- .+ + -....+++ ++++|+++++-+.+++|++||..++.
T Consensus 760 ~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gva---vd~dG~LYVADs~N~rIrviD~~tg~ 836 (1057)
T PLN02919 760 ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVL---CAKDGQIYVADSYNHKIKKLDPATKR 836 (1057)
T ss_pred CCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceee---EeCCCcEEEEECCCCEEEEEECCCCe
Confidence 77899999998765321110 00 0 01224554 67889999999999999999998765
Q ss_pred ccceeccc-------ccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeE
Q 000685 249 DSRELVPK-------LSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKE 300 (1352)
Q Consensus 249 ~~~~~~~~-------~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~ 300 (1352)
.......- ....++-.....+++++ +++++++-+.+++|++||+.+++.
T Consensus 837 v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~---dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 837 VTTLAGTGKAGFKDGKALKAQLSEPAGLALGE---NGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEEEeccCCcCCCCCcccccccCCceEEEEeC---CCCEEEEECCCCEEEEEECCCCcc
Confidence 43211000 00122223578899998 788999999999999999998764
No 281
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.30 E-value=7.7e-05 Score=92.04 Aligned_cols=179 Identities=18% Similarity=0.163 Sum_probs=106.5
Q ss_pred CCCeeeeeecCCCCeEEEEEecCc---EEEEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEE-EECCCc--E
Q 000685 120 TSGFASPPPSTKGRHFLVICCVNK---AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAF-GSSDGV--I 193 (1352)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~D~---~I~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~Las-Gs~DGt--I 193 (1352)
...+.+..|+|||+.++.+...++ +.++|+.+++...+... ........| +|||+.|+. .+.+|. |
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~---~g~~~~~~w-----SPDG~~La~~~~~~g~~~I 288 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF---PGINGAPRF-----SPDGKKLALVLSKDGQPEI 288 (448)
T ss_pred CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC---CCCcCCeeE-----CCCCCEEEEEEeCCCCeEE
Confidence 456788999999984444443332 33558887765433222 223346788 789998765 456665 7
Q ss_pred EEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeC-CC--cEEEEeCCCCCccceecccccccccccceEEEE
Q 000685 194 RVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS-DG--LLILWSADHGQDSRELVPKLSLKAHDGGVVAVE 270 (1352)
Q Consensus 194 rIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~-DG--tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~sla 270 (1352)
.+||+.+++.. .+. .+........ ++++++.|+..+. ++ .|.++|+.+++... .++.++ .....+
T Consensus 289 y~~dl~tg~~~-~lt-~~~~~~~~p~---wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-----Lt~~g~--~~~~~~ 356 (448)
T PRK04792 289 YVVDIATKALT-RIT-RHRAIDTEPS---WHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-----LTFEGE--QNLGGS 356 (448)
T ss_pred EEEECCCCCeE-ECc-cCCCCccceE---ECCCCCEEEEEECCCCCceEEEEECCCCCEEE-----EecCCC--CCcCee
Confidence 77888877653 343 4545555665 6889988776554 44 46666777665321 112222 234568
Q ss_pred eeccCCCCCEEEEEEC-CC--cEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEE
Q 000685 271 LSRVMGGSPQLITIGA-DK--TLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL 329 (1352)
Q Consensus 271 fsp~~~dg~~LaSgs~-Dg--tV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lL 329 (1352)
|+| ++++|+..+. ++ .|.++|+.+++. +.+ .... ......|+|+|+.|
T Consensus 357 ~Sp---DG~~l~~~~~~~g~~~I~~~dl~~g~~-~~l------t~~~-~d~~ps~spdG~~I 407 (448)
T PRK04792 357 ITP---DGRSMIMVNRTNGKFNIARQDLETGAM-QVL------TSTR-LDESPSVAPNGTMV 407 (448)
T ss_pred ECC---CCCEEEEEEecCCceEEEEEECCCCCe-EEc------cCCC-CCCCceECCCCCEE
Confidence 999 7777766554 44 455578777764 222 1111 11235799999955
No 282
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.25 E-value=0.0011 Score=78.29 Aligned_cols=288 Identities=13% Similarity=0.062 Sum_probs=158.6
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCCceEEEEEcCCe
Q 000685 22 THPWLVTADAS-----DHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDD 96 (1352)
Q Consensus 22 dg~~LaTgs~D-----G~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~sVaF~Dg~ 96 (1352)
++++++..... ++|.|.|..+++.+.++..+...... +++|++.|..+..-. .+.. .|. .+..
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~----~R~~-~G~------~~d~ 78 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVY----SRIA-RGK------RTDY 78 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccc----cccc-cCC------CCCE
Confidence 44555555443 89999999999999999987766664 889999888765310 0000 122 4789
Q ss_pred EEEEEcCCcccccccccc-c-cccCCCCeeeeeecCCCCeEEEEEec-CcEE-EEEeeCCccccccccccCCCCeEEEEE
Q 000685 97 VRFWQLWRNRAAAAEAPT-A-VSNVTSGFASPPPSTKGRHFLVICCV-NKAI-FLDLVTMRGRDIPKQELDNKSLVCMEF 172 (1352)
Q Consensus 97 IrlWDl~t~~~i~~~~~~-~-~~~~~~~V~slafspdg~~lLasgs~-D~~I-~wDl~t~~~~~i~~~~~h~~~V~~vaf 172 (1352)
|.+||..+.+.+...... . .......-..++++|||+.+++..-+ +..+ ++|+.+++... .... .+... .|
T Consensus 79 V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~--ei~v-p~~~~--vy 153 (352)
T TIGR02658 79 VEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVR--MMDV-PDCYH--IF 153 (352)
T ss_pred EEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEE--EEeC-CCCcE--EE
Confidence 999999998776421110 0 00012234478899999955555534 6666 66998876422 1111 11111 11
Q ss_pred eeccccCCCCEEEEEECCCcEEEEECCC-CeEE-EE--EecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCC
Q 000685 173 LSRSAVGDVPLVAFGSSDGVIRVLSMIS-WKLV-RR--YTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQ 248 (1352)
Q Consensus 173 ~P~s~Spdg~~LasGs~DGtIrIWDl~t-~~~i-~~--l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~ 248 (1352)
| ..+..+.+. +.||......+.+ ++.. .. +..+...++..---| ...++.++..... |+|.+-|+....
T Consensus 154 -~---t~e~~~~~~-~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~-~~~dg~~~~vs~e-G~V~~id~~~~~ 226 (352)
T TIGR02658 154 -P---TANDTFFMH-CRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAY-SNKSGRLVWPTYT-GKIFQIDLSSGD 226 (352)
T ss_pred -E---ecCCccEEE-eecCceEEEEecCCCceEEeeeeeecCCccccccCCce-EcCCCcEEEEecC-CeEEEEecCCCc
Confidence 1 122222222 2445444433321 2211 11 110111111111001 2337777766555 999999976543
Q ss_pred ccce-eccccccc-----ccccceEEEEeeccCCCCCEEEEEE----------CCCcEEEEECCCCeEEEEecCCCcccc
Q 000685 249 DSRE-LVPKLSLK-----AHDGGVVAVELSRVMGGSPQLITIG----------ADKTLAIWDTVSFKELRRIKPVPKLAC 312 (1352)
Q Consensus 249 ~~~~-~~~~~~l~-----gH~~~V~slafsp~~~dg~~LaSgs----------~DgtV~IWDl~tg~~l~~~~~~~~l~~ 312 (1352)
.... ........ -..+++.-+++++ ++.++.... ..+.|.++|..+++.+.++. .
T Consensus 227 ~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~---dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~-----v- 297 (352)
T TIGR02658 227 AKFLPAIEAFTEAEKADGWRPGGWQQVAYHR---ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE-----L- 297 (352)
T ss_pred ceecceeeeccccccccccCCCcceeEEEcC---CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe-----C-
Confidence 2111 00011111 1334555699998 566665532 12589999999999988852 2
Q ss_pred cCCceeEEEeCCCCC-EE--EEecCC--eEEeccCC
Q 000685 313 HSVASWCHPRAPNLD-IL--TCVKDS--HIWAIEHP 343 (1352)
Q Consensus 313 hs~~V~svafspdg~-lL--S~s~Dg--~IWDi~t~ 343 (1352)
...++.++++||++ +| +...++ .+.|..++
T Consensus 298 -G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 298 -GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred -CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 23677999999999 55 333344 37887765
No 283
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.24 E-value=7.9e-05 Score=91.02 Aligned_cols=162 Identities=13% Similarity=0.175 Sum_probs=124.5
Q ss_pred CeeeeeecCCCCeEEEEEecCcEEEEEeeCCccccccccccCCCCeEEEEEeecc-----ccC--CCCEEEEEECCCcEE
Q 000685 122 GFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRS-----AVG--DVPLVAFGSSDGVIR 194 (1352)
Q Consensus 122 ~V~slafspdg~~lLasgs~D~~I~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s-----~Sp--dg~~LasGs~DGtIr 194 (1352)
.-.++.|+|.| +++-|+..-+.++|..+.+. +.....|...|+.+.|.|.. .|| ..-+|+++...|.|.
T Consensus 17 N~~A~Dw~~~G--LiAygshslV~VVDs~s~q~--iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 17 NRNAADWSPSG--LIAYGSHSLVSVVDSRSLQL--IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred cccccccCccc--eEEEecCceEEEEehhhhhh--hhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 35678899988 89999988888888877644 56678899999999998842 222 234577888889999
Q ss_pred EEECCCCeEEEEEecCCCCCeeEEEEeeeCCCC-CEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeec
Q 000685 195 VLSMISWKLVRRYTGGHKGSISCLMTFMASSGE-ALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSR 273 (1352)
Q Consensus 195 IWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg-~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp 273 (1352)
+||...+..+..+. .|..++..++|+..-++. ..|+.-+...+|.+|+..+|+...++ ........|+.+.|
T Consensus 93 l~d~~~~s~~~~l~-~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~------~ys~~iLs~f~~DP 165 (1062)
T KOG1912|consen 93 LVDFVLASVINWLS-HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY------DYSHEILSCFRVDP 165 (1062)
T ss_pred EEEehhhhhhhhhc-CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc------ccCCcceeeeeeCC
Confidence 99999888877776 788999999998666666 67778888899999999999876542 22234456788888
Q ss_pred cCCCCCEEEEEECCCcEEEEECC
Q 000685 274 VMGGSPQLITIGADKTLAIWDTV 296 (1352)
Q Consensus 274 ~~~dg~~LaSgs~DgtV~IWDl~ 296 (1352)
. |.+.+..-+..|.|.+-+.-
T Consensus 166 f--d~rh~~~l~s~g~vl~~~~l 186 (1062)
T KOG1912|consen 166 F--DSRHFCVLGSKGFVLSCKDL 186 (1062)
T ss_pred C--CcceEEEEccCceEEEEecc
Confidence 5 66777777777877777653
No 284
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=0.00051 Score=81.67 Aligned_cols=182 Identities=14% Similarity=0.044 Sum_probs=113.6
Q ss_pred eeeeeecCCCCeEEEEEecCcEEEEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEEC-----------CC
Q 000685 123 FASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS-----------DG 191 (1352)
Q Consensus 123 V~slafspdg~~lLasgs~D~~I~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~-----------DG 191 (1352)
-+-+.|||.|. +|++-..-|+..|--.+... + .......|.-+.| ||+.+||++=+. ..
T Consensus 213 etyv~wSP~GT-YL~t~Hk~GI~lWGG~~f~r--~--~RF~Hp~Vq~idf-----SP~EkYLVT~s~~p~~~~~~d~e~~ 282 (698)
T KOG2314|consen 213 ETYVRWSPKGT-YLVTFHKQGIALWGGESFDR--I--QRFYHPGVQFIDF-----SPNEKYLVTYSPEPIIVEEDDNEGQ 282 (698)
T ss_pred eeeEEecCCce-EEEEEeccceeeecCccHHH--H--HhccCCCceeeec-----CCccceEEEecCCccccCcccCCCc
Confidence 34578999997 99999999999994333211 1 1223346788999 788999998652 25
Q ss_pred cEEEEECCCCeEEEEEecC-CCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEE
Q 000685 192 VIRVLSMISWKLVRRYTGG-HKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVE 270 (1352)
Q Consensus 192 tIrIWDl~t~~~i~~l~~g-H~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~sla 270 (1352)
.++|||+.+|...+.+..- ....+.-+ |..|.|+.+++--.. .+|.||+..+-..+.. ..+ .-.+|....
T Consensus 283 ~l~IWDI~tG~lkrsF~~~~~~~~~WP~--frWS~DdKy~Arm~~-~sisIyEtpsf~lld~----Ksl--ki~gIr~Fs 353 (698)
T KOG2314|consen 283 QLIIWDIATGLLKRSFPVIKSPYLKWPI--FRWSHDDKYFARMTG-NSISIYETPSFMLLDK----KSL--KISGIRDFS 353 (698)
T ss_pred eEEEEEccccchhcceeccCCCccccce--EEeccCCceeEEecc-ceEEEEecCceeeecc----ccc--CCccccCcc
Confidence 7999999999988877521 22223222 356889988886555 6789998765332211 111 235688889
Q ss_pred eeccCCCCCEEEEEEC-----CCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEEEEe
Q 000685 271 LSRVMGGSPQLITIGA-----DKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCV 332 (1352)
Q Consensus 271 fsp~~~dg~~LaSgs~-----DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lLS~s 332 (1352)
|+| .+.+|+-=.. -.++-+-.+-+++.+++- .-|...=..+-|-.+|++|+.-
T Consensus 354 wsP---~~~llAYwtpe~~~~parvtL~evPs~~~iRt~------nlfnVsDckLhWQk~gdyLcvk 411 (698)
T KOG2314|consen 354 WSP---TSNLLAYWTPETNNIPARVTLMEVPSKREIRTK------NLFNVSDCKLHWQKSGDYLCVK 411 (698)
T ss_pred cCC---CcceEEEEcccccCCcceEEEEecCccceeeec------cceeeeccEEEeccCCcEEEEE
Confidence 999 4566653221 234556666666665552 2222111245566778877543
No 285
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.21 E-value=1.3e-06 Score=106.59 Aligned_cols=205 Identities=16% Similarity=0.221 Sum_probs=138.5
Q ss_pred ccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCC
Q 000685 157 IPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSD 236 (1352)
Q Consensus 157 i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~D 236 (1352)
...+..|....+|++| +.+.++|+.|+..|.|++|++.+|....... +|...|+-+. .+.+|..+++.+.-
T Consensus 1094 w~~frd~~~~fTc~af-----s~~~~hL~vG~~~Geik~~nv~sG~~e~s~n-cH~SavT~ve---Ps~dgs~~Ltsss~ 1164 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAF-----SGGTNHLAVGSHAGEIKIFNVSSGSMEESVN-CHQSAVTLVE---PSVDGSTQLTSSSS 1164 (1516)
T ss_pred chhhhccccceeeEEe-----ecCCceEEeeeccceEEEEEccCcccccccc-cccccccccc---ccCCcceeeeeccc
Confidence 3445667889999999 7788999999999999999999998888876 9999999997 78888887766554
Q ss_pred C--cEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEe-cCCCccccc
Q 000685 237 G--LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRI-KPVPKLACH 313 (1352)
Q Consensus 237 G--tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~-~~~~~l~~h 313 (1352)
. -..+|++.+.- .+..++. .-.++.|+. ....-+.|..-....+||+.++..+.++ .... +.
T Consensus 1165 S~PlsaLW~~~s~~-----~~~Hsf~----ed~~vkFsn---~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~---~~ 1229 (1516)
T KOG1832|consen 1165 SSPLSALWDASSTG-----GPRHSFD----EDKAVKFSN---SLQFRALGTEADDALLYDVQTCSPLQTYLTDTV---TS 1229 (1516)
T ss_pred cCchHHHhcccccc-----Ccccccc----ccceeehhh---hHHHHHhcccccceEEEecccCcHHHHhcCcch---hh
Confidence 3 36789987521 1122222 235678876 2333344444467889999999877763 2221 11
Q ss_pred CCceeEEEeCCCCCEEEEecCCeEEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCe
Q 000685 314 SVASWCHPRAPNLDILTCVKDSHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGV 393 (1352)
Q Consensus 314 s~~V~svafspdg~lLS~s~Dg~IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~ 393 (1352)
+-.-++..|+|+..++- .||-+||++.... +..|..-.. --.-.||| .++.++..+
T Consensus 1230 ~y~~n~a~FsP~D~LIl--ndGvLWDvR~~~a---------------Ih~FD~ft~--~~~G~FHP-~g~eVIINS---- 1285 (1516)
T KOG1832|consen 1230 SYSNNLAHFSPCDTLIL--NDGVLWDVRIPEA---------------IHRFDQFTD--YGGGGFHP-SGNEVIINS---- 1285 (1516)
T ss_pred hhhccccccCCCcceEe--eCceeeeeccHHH---------------Hhhhhhhee--cccccccC-CCceEEeec----
Confidence 12225788999988764 5889999985411 111211111 11246899 466566655
Q ss_pred EEEEecCCCCCCccccCC
Q 000685 394 IISEFDPRSLPAVAPLPT 411 (1352)
Q Consensus 394 IlriWd~~~~p~i~~l~~ 411 (1352)
-+||+|+...+...|.
T Consensus 1286 --EIwD~RTF~lLh~VP~ 1301 (1516)
T KOG1832|consen 1286 --EIWDMRTFKLLHSVPS 1301 (1516)
T ss_pred --hhhhhHHHHHHhcCcc
Confidence 3899998877776654
No 286
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.18 E-value=0.00065 Score=80.35 Aligned_cols=183 Identities=13% Similarity=0.048 Sum_probs=117.7
Q ss_pred CCCeeeeeecCCCCeEEEEEecCcEEEEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCC--------
Q 000685 120 TSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDG-------- 191 (1352)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~D~~I~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DG-------- 191 (1352)
.-.+..++|||.|. +|++....++..|+..... +. .......|..+.| ||++.||.+=+..+
T Consensus 32 ~~p~~~~~~SP~G~-~l~~~~~~~V~~~~g~~~~-~l---~~~~~~~V~~~~f-----SP~~kYL~tw~~~pi~~pe~e~ 101 (561)
T COG5354 32 NWPVAYVSESPLGT-YLFSEHAAGVECWGGPSKA-KL---VRFRHPDVKYLDF-----SPNEKYLVTWSREPIIEPEIEI 101 (561)
T ss_pred CcchhheeecCcch-heehhhccceEEccccchh-he---eeeecCCceeccc-----CcccceeeeeccCCccChhhcc
Confidence 56788899999997 8888888888888655543 11 2334457888999 78999999866533
Q ss_pred -------cEEEEECCCCeEEEEEecCCCCC--ee-EEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccc
Q 000685 192 -------VIRVLSMISWKLVRRYTGGHKGS--IS-CLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKA 261 (1352)
Q Consensus 192 -------tIrIWDl~t~~~i~~l~~gH~~~--V~-slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~g 261 (1352)
.+.+||..++..+..+. +-... .. -+ .++.+..+++=- ....++|+++ ++.... .+...++
T Consensus 102 sp~~~~n~~~vwd~~sg~iv~sf~-~~~q~~~~Wp~~---k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~--~p~~~lr- 172 (561)
T COG5354 102 SPFTSKNNVFVWDIASGMIVFSFN-GISQPYLGWPVL---KFSIDDKYVARV-VGSSLYIHEI-TDNIEE--HPFKNLR- 172 (561)
T ss_pred CCccccCceeEEeccCceeEeecc-ccCCccccccee---eeeecchhhhhh-ccCeEEEEec-CCcccc--Cchhhcc-
Confidence 49999999999998886 33332 22 22 356666555433 3457899997 443221 1112222
Q ss_pred cccceEEEEeeccCCCCCEEE-----EEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEE
Q 000685 262 HDGGVVAVELSRVMGGSPQLI-----TIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL 329 (1352)
Q Consensus 262 H~~~V~slafsp~~~dg~~La-----Sgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lL 329 (1352)
..+|....|+|. .++..|+ ..+.++++++|.+..+..+.+-. +. ...-..+.|++.|.++
T Consensus 173 -~~gi~dFsisP~-~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~----lf--k~~~~qLkW~~~g~~l 237 (561)
T COG5354 173 -PVGILDFSISPE-GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN----LF--KVSGVQLKWQVLGKYL 237 (561)
T ss_pred -ccceeeEEecCC-CCCceEEEEccccCCCCcEEEEEEccCCCeeeeee----eE--eecccEEEEecCCceE
Confidence 356888889983 1334444 34678999999998766554411 11 1111267888888854
No 287
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=0.00036 Score=82.90 Aligned_cols=319 Identities=11% Similarity=0.077 Sum_probs=179.2
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEe--ccccceeEecccccCCCccccccCCceEEEEE
Q 000685 15 VKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV--GAKLEKLAEGELEHKGKPTEAMRGGSVKQVNF 92 (1352)
Q Consensus 15 ~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~v--s~dg~~Lasgs~d~~g~~l~~l~~g~V~sVaF 92 (1352)
+-+.|||.|.||+|- +-.-|.+|--.+-..++.|. | .++..+ +|..++|++-+....+..- +..
T Consensus 214 tyv~wSP~GTYL~t~-Hk~GI~lWGG~~f~r~~RF~-H--p~Vq~idfSP~EkYLVT~s~~p~~~~~----~d~------ 279 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTF-HKQGIALWGGESFDRIQRFY-H--PGVQFIDFSPNEKYLVTYSPEPIIVEE----DDN------ 279 (698)
T ss_pred eeEEecCCceEEEEE-eccceeeecCccHHHHHhcc-C--CCceeeecCCccceEEEecCCccccCc----ccC------
Confidence 568999999999998 55558899876666666665 3 234444 4899999886533221100 000
Q ss_pred cCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEEEeeCCccccccccccCCCCeEEEEE
Q 000685 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEF 172 (1352)
Q Consensus 93 ~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl~t~~~~~i~~~~~h~~~V~~vaf 172 (1352)
....++|||+.+|......... ... ...-.-..||.|++ +++--..+++.+++..+... +......-..|....|
T Consensus 280 e~~~l~IWDI~tG~lkrsF~~~-~~~-~~~WP~frWS~DdK-y~Arm~~~sisIyEtpsf~l--ld~Kslki~gIr~Fsw 354 (698)
T KOG2314|consen 280 EGQQLIIWDIATGLLKRSFPVI-KSP-YLKWPIFRWSHDDK-YFARMTGNSISIYETPSFML--LDKKSLKISGIRDFSW 354 (698)
T ss_pred CCceEEEEEccccchhcceecc-CCC-ccccceEEeccCCc-eeEEeccceEEEEecCceee--ecccccCCccccCccc
Confidence 3468999999999765322111 111 11122356999998 77777777777775544322 2122334567888888
Q ss_pred eeccccCCCCEEEEEECC-----CcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEE----------eCCC
Q 000685 173 LSRSAVGDVPLVAFGSSD-----GVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSG----------GSDG 237 (1352)
Q Consensus 173 ~P~s~Spdg~~LasGs~D-----GtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSg----------S~DG 237 (1352)
+|.+++|+.=+.. ..+.+-.+.+++.+++-. -| .|..+.. ....+|.+|+.- +.=.
T Consensus 355 -----sP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~n-lf--nVsDckL-hWQk~gdyLcvkvdR~tK~~~~g~f~ 425 (698)
T KOG2314|consen 355 -----SPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKN-LF--NVSDCKL-HWQKSGDYLCVKVDRHTKSKVKGQFS 425 (698)
T ss_pred -----CCCcceEEEEcccccCCcceEEEEecCccceeeecc-ce--eeeccEE-EeccCCcEEEEEEEeeccccccceEe
Confidence 6777777754321 246666666666665432 22 2333321 245666666542 1112
Q ss_pred cEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEEC---CCcEEEEECCC-CeEEEEecCCCccccc
Q 000685 238 LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA---DKTLAIWDTVS-FKELRRIKPVPKLACH 313 (1352)
Q Consensus 238 tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~---DgtV~IWDl~t-g~~l~~~~~~~~l~~h 313 (1352)
.+.|+.++.... |.-. -.-...|...+|-| .|+.+++-+. ..++.+|.+.+ .. .++.+..+..
T Consensus 426 n~eIfrireKdI-----pve~-velke~vi~FaWEP---~gdkF~vi~g~~~k~tvsfY~~e~~~~---~~~lVk~~dk- 492 (698)
T KOG2314|consen 426 NLEIFRIREKDI-----PVEV-VELKESVIAFAWEP---HGDKFAVISGNTVKNTVSFYAVETNIK---KPSLVKELDK- 492 (698)
T ss_pred eEEEEEeeccCC-----Ccee-eecchheeeeeecc---CCCeEEEEEccccccceeEEEeecCCC---chhhhhhhcc-
Confidence 244555544321 1111 22346688899999 4555554432 35788998873 22 1111222222
Q ss_pred CCceeEEEeCCCCCEEE-E---ecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEE
Q 000685 314 SVASWCHPRAPNLDILT-C---VKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVAT 387 (1352)
Q Consensus 314 s~~V~svafspdg~lLS-~---s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLat 387 (1352)
...+.+.|+|.|++++ + |..|. .+|...... ..+-...+- ..+.+.|.| .|.++.+
T Consensus 493 -~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~---------------k~~~~~eh~-~at~veWDP-tGRYvvT 554 (698)
T KOG2314|consen 493 -KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADL---------------KDTASPEHF-AATEVEWDP-TGRYVVT 554 (698)
T ss_pred -cccceEEEcCCCcEEEEEEecccccceEEEecchhhh---------------hhccCcccc-ccccceECC-CCCEEEE
Confidence 2334789999999663 2 33343 577663111 011111222 577899999 5777888
Q ss_pred EECCC
Q 000685 388 GTNVG 392 (1352)
Q Consensus 388 Gs~DG 392 (1352)
++..+
T Consensus 555 ~ss~w 559 (698)
T KOG2314|consen 555 SSSSW 559 (698)
T ss_pred eeehh
Confidence 87643
No 288
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.14 E-value=8.7e-06 Score=98.41 Aligned_cols=297 Identities=11% Similarity=0.104 Sum_probs=175.3
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEEeccCccceEEeccccceeEecccccCCCccccccCCceEEE
Q 000685 12 DKIVKIQLHPTHPWLVTADASDHVSVWNWEH-RQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQV 90 (1352)
Q Consensus 12 ~~V~~lafSPdg~~LaTgs~DG~VrVWDl~t-g~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~sV 90 (1352)
+++.++.++|.|+-++.++.-|.. +-|+.. +..-.-+. |... ..++-.- ...-..-+.+.|
T Consensus 25 ~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~--h~tp--------w~vad~q-------ws~h~a~~~wiV 86 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFTPPRWLH--HITP--------WQVADVQ-------WSPHPAKPYWIV 86 (1081)
T ss_pred CcccceeeccccchhhhhhhcCeE-EEeccCCCCCceeee--ccCc--------chhccee-------cccCCCCceeEE
Confidence 567889999999999998877754 445442 22221111 1000 0000000 000001344555
Q ss_pred EEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccccccCCCCeEE
Q 000685 91 NFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVC 169 (1352)
Q Consensus 91 aF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~h~~~V~~ 169 (1352)
.+....-.+|++....... .......|...|+.+.|+++.+.++++++-|..+ .||+.+...-.. ....-...-..
T Consensus 87 sts~qkaiiwnlA~ss~~a--Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~y-s~~~w~s~asq 163 (1081)
T KOG0309|consen 87 STSNQKAIIWNLAKSSSNA--IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFY-STSSWRSAASQ 163 (1081)
T ss_pred ecCcchhhhhhhhcCCccc--eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCccee-eeecccccCce
Confidence 5556666677765442211 1223333488899999999998899999999888 779887653221 22222345567
Q ss_pred EEEeeccccCCCCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCC
Q 000685 170 MEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQ 248 (1352)
Q Consensus 170 vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~-~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~ 248 (1352)
+.| +-....+...+....|++||.+.+ ..+..+. +|...|+.+. +.......+.+++.||+|+.||.....
T Consensus 164 Vkw-----nyk~p~vlasshg~~i~vwd~r~gs~pl~s~K-~~vs~vn~~~--fnr~~~s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 164 VKW-----NYKDPNVLASSHGNDIFVWDLRKGSTPLCSLK-GHVSSVNSID--FNRFKYSEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred eee-----cccCcchhhhccCCceEEEeccCCCcceEEec-ccceeeehHH--HhhhhhhhhcccCCCCceeeecccccc
Confidence 888 444455666678888999999876 4555665 8999999887 244556688999999999999997654
Q ss_pred ccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEE----EEecCCCcccccCCceeEEEeCC
Q 000685 249 DSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKEL----RRIKPVPKLACHSVASWCHPRAP 324 (1352)
Q Consensus 249 ~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l----~~~~~~~~l~~hs~~V~svafsp 324 (1352)
...+ + ......+|+.-.|-|. +++.++.---.+..+.+++.++.... ....++..+.||+..|....|-.
T Consensus 236 ~e~~----~-~vtt~~piw~~r~~Pf-g~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~ 309 (1081)
T KOG0309|consen 236 TESK----R-TVTTNFPIWRGRYLPF-GEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRK 309 (1081)
T ss_pred cccc----e-eccccCcceecccccc-CceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhh
Confidence 2211 1 1223455666666664 23333332222335555554432111 11233445789998876554432
Q ss_pred --------C---CCEEEEecCCe--EEeccCC
Q 000685 325 --------N---LDILTCVKDSH--IWAIEHP 343 (1352)
Q Consensus 325 --------d---g~lLS~s~Dg~--IWDi~t~ 343 (1352)
| -++++=|.|.+ +|.+...
T Consensus 310 r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 310 RKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred cccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 2 22678888885 8988754
No 289
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.13 E-value=3.1e-05 Score=84.47 Aligned_cols=145 Identities=20% Similarity=0.241 Sum_probs=89.4
Q ss_pred CCCEEEEEECCCcEEEEECCCCeE-EEEEecCCCCCeeEEEEeeeCCCCCEEEEEeC-----CCcEEEEeCCCCCcccee
Q 000685 180 DVPLVAFGSSDGVIRVLSMISWKL-VRRYTGGHKGSISCLMTFMASSGEALLVSGGS-----DGLLILWSADHGQDSREL 253 (1352)
Q Consensus 180 dg~~LasGs~DGtIrIWDl~t~~~-i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~-----DGtVrVWDl~tg~~~~~~ 253 (1352)
.++.++++..||.+.+++.+.-.. ..++...|.+. .+.+ .-..++++.++.. -+..+.|+++..+.+..
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~---~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~- 174 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRK---ICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIP- 174 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccc---eeecccEEecCCcceEeeccceeeecccccccccc-
Confidence 467799999999999999865211 11111112111 1111 1123444444321 12334555543221110
Q ss_pred cccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCC--EEEE
Q 000685 254 VPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD--ILTC 331 (1352)
Q Consensus 254 ~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~--lLS~ 331 (1352)
. ..-...|.+++-||. ...++++|+.||.+-+||.+..... ...+..|...++.+-|+|... ++++
T Consensus 175 -~----~~~~~~v~~l~~hp~--qq~~v~cgt~dg~~~l~d~rn~~~p-----~S~l~ahk~~i~eV~FHpk~p~~Lft~ 242 (319)
T KOG4714|consen 175 -S----KKALDAVTALCSHPA--QQHLVCCGTDDGIVGLWDARNVAMP-----VSLLKAHKAEIWEVHFHPKNPEHLFTC 242 (319)
T ss_pred -c----ccccccchhhhCCcc--cccEEEEecCCCeEEEEEcccccch-----HHHHHHhhhhhhheeccCCCchheeEe
Confidence 0 111234999999994 5678889999999999999977432 234789999999999999743 8899
Q ss_pred ecCCeEEecc
Q 000685 332 VKDSHIWAIE 341 (1352)
Q Consensus 332 s~Dg~IWDi~ 341 (1352)
++||.+|.+.
T Consensus 243 sedGslw~wd 252 (319)
T KOG4714|consen 243 SEDGSLWHWD 252 (319)
T ss_pred cCCCcEEEEc
Confidence 9999976655
No 290
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.09 E-value=7.7e-06 Score=64.61 Aligned_cols=36 Identities=22% Similarity=0.564 Sum_probs=35.1
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWN 39 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWD 39 (1352)
+++|++|.+.|++|+|+|++.+|+||+.|+.|+|||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 789999999999999999999999999999999998
No 291
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.06 E-value=0.026 Score=75.31 Aligned_cols=262 Identities=12% Similarity=0.123 Sum_probs=146.3
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccC---------------
Q 000685 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHK--------------- 75 (1352)
Q Consensus 11 s~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~--------------- 75 (1352)
..+|.|++||||+..|+..+.+++|.+-+ .+...+.+...+..+. ...+.+..|+..+.
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~i~E~~l~~~~~-----~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~ 193 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMT-RDFDPISEVPLDSDDF-----GESKHVSVGWGKKETQFHGSAGKAAARQL 193 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceEEEEeecCcccc-----CCCceeeeccCcccCccCcchhhhhhhhc
Confidence 35899999999999999999999998875 4455555544221110 01112222211110
Q ss_pred -----------------CCccccccC-CceEEEEE----c--CCeEEEEEcCCccccccccccccccCCCCeeeeeecCC
Q 000685 76 -----------------GKPTEAMRG-GSVKQVNF----Y--DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTK 131 (1352)
Q Consensus 76 -----------------g~~l~~l~~-g~V~sVaF----~--Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspd 131 (1352)
+++...=++ |...+|.+ . -..+|+|+-. |... .......+--.+++|.|.
T Consensus 194 ~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~-----stSE~v~gLe~~l~WrPs 267 (928)
T PF04762_consen 194 RDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQ-----STSEPVDGLEGALSWRPS 267 (928)
T ss_pred cCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEE-----eccccCCCccCCccCCCC
Confidence 000000111 34444444 1 2568888766 3221 122222333457899999
Q ss_pred CCeEEEEEec---CcEE-EEEeeCCcccccccc--ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEE-
Q 000685 132 GRHFLVICCV---NKAI-FLDLVTMRGRDIPKQ--ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLV- 204 (1352)
Q Consensus 132 g~~lLasgs~---D~~I-~wDl~t~~~~~i~~~--~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i- 204 (1352)
|. ++++... ...| +|.- +|-...-... ......|..+.| ++++..|+.-..|. |.+|-..+...-
T Consensus 268 G~-lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~W-----n~ds~iLAv~~~~~-vqLWt~~NYHWYL 339 (928)
T PF04762_consen 268 GN-LIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAW-----NSDSEILAVWLEDR-VQLWTRSNYHWYL 339 (928)
T ss_pred CC-EEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEE-----CCCCCEEEEEecCC-ceEEEeeCCEEEE
Confidence 97 8777764 2233 3322 2211111111 234568899999 78999999987665 999998875432
Q ss_pred -EEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeC----CCCC----------------ccc-------eeccc
Q 000685 205 -RRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSA----DHGQ----------------DSR-------ELVPK 256 (1352)
Q Consensus 205 -~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl----~tg~----------------~~~-------~~~~~ 256 (1352)
+.+.-.....+..+.| .+.+...|...+.+|.+..+++ ..+. .+. ...|.
T Consensus 340 Kqei~~~~~~~~~~~~W--dpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPP 417 (928)
T PF04762_consen 340 KQEIRFSSSESVNFVKW--DPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPP 417 (928)
T ss_pred EEEEEccCCCCCCceEE--CCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCch
Confidence 2222123334445665 3445666777777677665443 2111 000 00011
Q ss_pred ---ccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCC
Q 000685 257 ---LSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSF 298 (1352)
Q Consensus 257 ---~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg 298 (1352)
+.+. ....|++++|++ ++..+++-..||+|.+|.....
T Consensus 418 Ms~~~l~-~~~~v~~vaf~~---~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 418 MSSYELE-LPSPVNDVAFSP---SNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred HhceEEc-CCCCcEEEEEeC---CCCeEEEEECCCCEEEEEecCC
Confidence 1111 346799999999 5666899999999999986543
No 292
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.06 E-value=0.00078 Score=74.04 Aligned_cols=194 Identities=9% Similarity=-0.039 Sum_probs=121.9
Q ss_pred EEEEEecCcEEEE-EeeCCccccccccccCCC--CeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCC-e-EEEEEec
Q 000685 135 FLVICCVNKAIFL-DLVTMRGRDIPKQELDNK--SLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-K-LVRRYTG 209 (1352)
Q Consensus 135 lLasgs~D~~I~w-Dl~t~~~~~i~~~~~h~~--~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~-~-~i~~l~~ 209 (1352)
-+..++.|..+.. ++.-+..+ ...|.. .+.++.+ +++++++++.++...|..|.+... + .++....
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~----~~~h~~~~~~ns~~~-----snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a 200 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNK----FAVHNQNLTQNSLHY-----SNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEA 200 (344)
T ss_pred ceeeccCCcceeEEEEecCccc----ceeeccccceeeeEE-----cCCCceEEEecCCCcceEEEeCCccceeeeeEec
Confidence 3455566666633 44433221 123332 3677888 889999999999999999988642 3 3332333
Q ss_pred CCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCc
Q 000685 210 GHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKT 289 (1352)
Q Consensus 210 gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~Dgt 289 (1352)
..++.-.+.. ++.....|++++.||++.|||++........ ...+-..|.+.+..+.|++. +--.+|.-.-.-+.
T Consensus 201 ~t~D~gF~~S---~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~-~sstrp~hnGa~R~c~Fsl~-g~lDLLf~sEhfs~ 275 (344)
T KOG4532|consen 201 PTSDHGFYNS---FSENDLQFAVVFQDGTCAIYDVRNMATPMAE-ISSTRPHHNGAFRVCRFSLY-GLLDLLFISEHFSR 275 (344)
T ss_pred ccCCCceeee---eccCcceEEEEecCCcEEEEEecccccchhh-hcccCCCCCCceEEEEecCC-CcceEEEEecCcce
Confidence 4445556665 5778889999999999999999874322111 11123458899999999982 22345666666789
Q ss_pred EEEEECCCCeEEEEecCCC-cccccCCc-eeEEEeCCCCCEE-EEecCC-eEEeccC
Q 000685 290 LAIWDTVSFKELRRIKPVP-KLACHSVA-SWCHPRAPNLDIL-TCVKDS-HIWAIEH 342 (1352)
Q Consensus 290 V~IWDl~tg~~l~~~~~~~-~l~~hs~~-V~svafspdg~lL-S~s~Dg-~IWDi~t 342 (1352)
+.+.|+++++..+.+.... ....|... +..-.|+.++.-+ +.+++. .=|++..
T Consensus 276 ~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~s 332 (344)
T KOG4532|consen 276 VHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQGAEYNILS 332 (344)
T ss_pred EEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccchhhheeeccc
Confidence 9999999998766654332 33444433 6666777666533 333332 3466654
No 293
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.06 E-value=2.1e-05 Score=85.63 Aligned_cols=147 Identities=12% Similarity=0.101 Sum_probs=95.2
Q ss_pred EEEEEecCcEEEEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCC
Q 000685 135 FLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGS 214 (1352)
Q Consensus 135 lLasgs~D~~I~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~ 214 (1352)
+...-..|..+.|+.+..+... ......+.|.+++-||. ..+++++|+.||.+-+||+++......+...|+..
T Consensus 152 ~g~~n~~d~~~a~~~~p~~t~~--~~~~~~~~v~~l~~hp~----qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~ 225 (319)
T KOG4714|consen 152 CGNWNAQDNFYANTLDPIKTLI--PSKKALDAVTALCSHPA----QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAE 225 (319)
T ss_pred cceEeeccceeeeccccccccc--ccccccccchhhhCCcc----cccEEEEecCCCeEEEEEcccccchHHHHHHhhhh
Confidence 3444455666666554432211 12233445999999763 35678899999999999999886666666689999
Q ss_pred eeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCC-----------------ccce-ecccccccccccceEEEEeeccCC
Q 000685 215 ISCLMTFMASSGEALLVSGGSDGLLILWSADHGQ-----------------DSRE-LVPKLSLKAHDGGVVAVELSRVMG 276 (1352)
Q Consensus 215 V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~-----------------~~~~-~~~~~~l~gH~~~V~slafsp~~~ 276 (1352)
+.-+. +.+.++..|++++.||.+-.||..+.- ..+. +.....+......|+++...
T Consensus 226 i~eV~--FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~---- 299 (319)
T KOG4714|consen 226 IWEVH--FHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVL---- 299 (319)
T ss_pred hhhee--ccCCCchheeEecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeecc----
Confidence 99996 366788999999999999999987411 0110 00000011122335555543
Q ss_pred CCCEEEEEECCCcEEEEE
Q 000685 277 GSPQLITIGADKTLAIWD 294 (1352)
Q Consensus 277 dg~~LaSgs~DgtV~IWD 294 (1352)
+..|++|++-+.|++++
T Consensus 300 -g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 300 -GPCLVCGTDAEAIYLTR 316 (319)
T ss_pred -CceEEeccccceEEEec
Confidence 57888888888887765
No 294
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.05 E-value=5.5e-06 Score=101.45 Aligned_cols=220 Identities=15% Similarity=0.213 Sum_probs=143.3
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCcccccc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~ 83 (1352)
.++|+.|+...+|++|+-+.++|+.|+..|.|+++++.+|.......+|
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH------------------------------- 1142 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCH------------------------------- 1142 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccc-------------------------------
Confidence 5788999999999999999999999999999999999987765554432
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE--EEEeeCCccccccccc
Q 000685 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI--FLDLVTMRGRDIPKQE 161 (1352)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I--~wDl~t~~~~~i~~~~ 161 (1352)
.+.|+-+.-+.+|...|.+.+...-. .|+..+- ... .
T Consensus 1143 ------------------------------------~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~-~~~----~ 1181 (1516)
T KOG1832|consen 1143 ------------------------------------QSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST-GGP----R 1181 (1516)
T ss_pred ------------------------------------ccccccccccCCcceeeeeccccCchHHHhccccc-cCc----c
Confidence 34455555566776555555555533 6765441 111 1
Q ss_pred cCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecC---CCCCeeEEEEeeeCCCCCEEEEEeCCCc
Q 000685 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGG---HKGSISCLMTFMASSGEALLVSGGSDGL 238 (1352)
Q Consensus 162 ~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~g---H~~~V~slawf~~s~dg~~LaSgS~DGt 238 (1352)
..-..-.|+.| +.....-+.|+......+||++++..+.++..+ .+..-++. .|+|+..+++ .||
T Consensus 1182 Hsf~ed~~vkF-----sn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a---~FsP~D~LIl---ndG- 1249 (1516)
T KOG1832|consen 1182 HSFDEDKAVKF-----SNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLA---HFSPCDTLIL---NDG- 1249 (1516)
T ss_pred ccccccceeeh-----hhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcccc---ccCCCcceEe---eCc-
Confidence 11334567888 333444455555567899999998777664322 12222334 3899988886 466
Q ss_pred EEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCcee
Q 000685 239 LILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASW 318 (1352)
Q Consensus 239 VrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~ 318 (1352)
.+||++..+.++.|.. ++.. ..-.||| .|..++.-+ .|||+++.+.++.... + .-.
T Consensus 1250 -vLWDvR~~~aIh~FD~-ft~~------~~G~FHP---~g~eVIINS-----EIwD~RTF~lLh~VP~---L-----dqc 1305 (1516)
T KOG1832|consen 1250 -VLWDVRIPEAIHRFDQ-FTDY------GGGGFHP---SGNEVIINS-----EIWDMRTFKLLHSVPS---L-----DQC 1305 (1516)
T ss_pred -eeeeeccHHHHhhhhh-heec------ccccccC---CCceEEeec-----hhhhhHHHHHHhcCcc---c-----cce
Confidence 4799998876665321 1111 1235899 677777766 5999999887776311 1 123
Q ss_pred EEEeCCCCCEEEE
Q 000685 319 CHPRAPNLDILTC 331 (1352)
Q Consensus 319 svafspdg~lLS~ 331 (1352)
.+.|+..|.++-+
T Consensus 1306 ~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1306 AVTFNSTGDVMYA 1318 (1516)
T ss_pred EEEeccCccchhh
Confidence 6788888876633
No 295
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.0088 Score=75.03 Aligned_cols=165 Identities=16% Similarity=0.104 Sum_probs=104.2
Q ss_pred EEEEeCCCcEEEEEcChhhhhhhHHHhcCCHHHHHHHHhh--cChh----hHHHHHHHHHhCCcchhhcccccccCccEE
Q 000685 887 LWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASR--LGRE----HHDDLAQFMLGMGYATEALHLPGISKRLEF 960 (1352)
Q Consensus 887 ~~~~d~~~~~~~~~l~~~~~~f~~~~~~~d~~~a~~~~~~--i~~~----~~~~~a~fl~~~G~~e~Al~~~~ds~~~kf 960 (1352)
.|++..+++++.+.=-.-.-+-.++.....|+-|+.++.. .+.+ .|.+.+.||-++|-.++|..-+-.+
T Consensus 320 ~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~t----- 394 (933)
T KOG2114|consen 320 CLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIET----- 394 (933)
T ss_pred EEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-----
Confidence 3445555555443211112223355566778889998877 3433 3788899999999999998877554
Q ss_pred EeecccccHHHHHHHHhhcccccccCCCCCCCCccccccccccchhhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHH
Q 000685 961 DLAMQSNDLKRALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREA 1040 (1352)
Q Consensus 961 ~la~~~g~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~A~~~ 1040 (1352)
.|-+|-+.=|..+++. +.=+.|..+ .+|
T Consensus 395 -----I~~le~s~Vi~kfLda-------------------------------------q~IknLt~Y----------Le~ 422 (933)
T KOG2114|consen 395 -----IGFLEPSEVIKKFLDA-------------------------------------QRIKNLTSY----------LEA 422 (933)
T ss_pred -----cccCChHHHHHHhcCH-------------------------------------HHHHHHHHH----------HHH
Confidence 4555666555422111 233334333 223
Q ss_pred HHHHHhcCCcccccccccchhhH-HHHhccCChhHHHHHHHHHHHcCCcHHHHHHHHHcCCHHHHHHHHHHcCCcHHHHH
Q 000685 1041 LKRLAAAGSVKGALQGHELRGLA-LRLANHGELTRLSGLVTNLISLGLGREAAFSAAILGDNALMEKAWQDTGMLAEAVL 1119 (1352)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~~~~~l~-ll~~~~g~~~~l~~l~~~a~~~~~~~~~af~~~~lgd~~~~~~~l~~~~~~~~A~~ 1119 (1352)
+.+. + +--.|-..|+ -+|...+|.++|.+..+.+. .|.+ -=|++.+++++.+.+.+.||.+
T Consensus 423 L~~~---g-----la~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~---------~fd~e~al~Ilr~snyl~~a~~ 484 (933)
T KOG2114|consen 423 LHKK---G-----LANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW---------FFDVETALEILRKSNYLDEAEL 484 (933)
T ss_pred HHHc---c-----cccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce---------eeeHHHHHHHHHHhChHHHHHH
Confidence 3332 1 1112444454 37888888899999877777 6655 3488999999999999999999
Q ss_pred HHHHcCC
Q 000685 1120 HAHAHGR 1126 (1352)
Q Consensus 1120 ~A~t~~~ 1126 (1352)
+|.-|+.
T Consensus 485 LA~k~~~ 491 (933)
T KOG2114|consen 485 LATKFKK 491 (933)
T ss_pred HHHHhcc
Confidence 9998886
No 296
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.95 E-value=0.0013 Score=80.01 Aligned_cols=137 Identities=15% Similarity=0.094 Sum_probs=86.6
Q ss_pred CCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceeccccccc
Q 000685 181 VPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLK 260 (1352)
Q Consensus 181 g~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~ 260 (1352)
+..++.++.+|.+..+|..+++.+-+...+. ...+. ..+..++.++.||.|..+|..+++.+.... .+.
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~---~~~~~-----~~~~~vy~~~~~g~l~ald~~tG~~~W~~~---~~~ 324 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYGS---VNDFA-----VDGGRIYLVDQNDRVYALDTRGGVELWSQS---DLL 324 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCCC---ccCcE-----EECCEEEEEcCCCeEEEEECCCCcEEEccc---ccC
Confidence 5567778889999999999998765543121 11111 145677778899999999999987654310 011
Q ss_pred ccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEEEEecCCeEEec
Q 000685 261 AHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAI 340 (1352)
Q Consensus 261 gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lLS~s~Dg~IWDi 340 (1352)
+ ....+.... +.+|+.++.||.|.+.|..+|+.+.+.+. ....+.+-..-.++.++.++.||+|+-+
T Consensus 325 -~-~~~~sp~v~-----~g~l~v~~~~G~l~~ld~~tG~~~~~~~~------~~~~~~s~P~~~~~~l~v~t~~G~l~~~ 391 (394)
T PRK11138 325 -H-RLLTAPVLY-----NGYLVVGDSEGYLHWINREDGRFVAQQKV------DSSGFLSEPVVADDKLLIQARDGTVYAI 391 (394)
T ss_pred -C-CcccCCEEE-----CCEEEEEeCCCEEEEEECCCCCEEEEEEc------CCCcceeCCEEECCEEEEEeCCceEEEE
Confidence 1 111222222 45788899999999999999998776422 1112222111235678888999987655
Q ss_pred c
Q 000685 341 E 341 (1352)
Q Consensus 341 ~ 341 (1352)
+
T Consensus 392 ~ 392 (394)
T PRK11138 392 T 392 (394)
T ss_pred e
Confidence 4
No 297
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.95 E-value=0.0043 Score=83.96 Aligned_cols=209 Identities=10% Similarity=-0.018 Sum_probs=124.9
Q ss_pred eeeeeecCCCCeEEEEEecCcEE-EEEeeCCcccccccc-------cc-------CCCCeEEEEEeeccccC-CCCEEEE
Q 000685 123 FASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQ-------EL-------DNKSLVCMEFLSRSAVG-DVPLVAF 186 (1352)
Q Consensus 123 V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~-------~~-------h~~~V~~vaf~P~s~Sp-dg~~Las 186 (1352)
-..+++++++..++++-..++.| ++|..++....+... .. .-....+++| ++ ++.++++
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~-----dp~~g~LyVa 700 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCF-----EPVNEKVYIA 700 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEE-----ecCCCeEEEE
Confidence 46677888776445555555555 457665433221100 00 0124467888 55 5666777
Q ss_pred EECCCcEEEEECCCCeEEEEEe-c-------CCC------CCeeEEEEeeeCCCCC-EEEEEeCCCcEEEEeCCCCCccc
Q 000685 187 GSSDGVIRVLSMISWKLVRRYT-G-------GHK------GSISCLMTFMASSGEA-LLVSGGSDGLLILWSADHGQDSR 251 (1352)
Q Consensus 187 Gs~DGtIrIWDl~t~~~i~~l~-~-------gH~------~~V~slawf~~s~dg~-~LaSgS~DGtVrVWDl~tg~~~~ 251 (1352)
.+.++.|++||..++... .+. . ++. .....++ ++++++ ++++-+.+++|++||+.++....
T Consensus 701 d~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIa---vspdG~~LYVADs~n~~Irv~D~~tg~~~~ 776 (1057)
T PLN02919 701 MAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGIS---LSPDLKELYIADSESSSIRALDLKTGGSRL 776 (1057)
T ss_pred ECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEE---EeCCCCEEEEEECCCCeEEEEECCCCcEEE
Confidence 778899999999876543 221 0 111 1234465 678877 66677778999999998764211
Q ss_pred ee-------cccccccc--------cccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCC-------c
Q 000685 252 EL-------VPKLSLKA--------HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVP-------K 309 (1352)
Q Consensus 252 ~~-------~~~~~l~g--------H~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~-------~ 309 (1352)
.. ...+.+.. .-.....+++++ ++.++++-+.+++|++||..++.......... .
T Consensus 777 ~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~---dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~ 853 (1057)
T PLN02919 777 LAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK---DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKA 853 (1057)
T ss_pred EEecccccCcccccccCCCCchhhhhccCCceeeEeC---CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcc
Confidence 00 00000110 111246788988 78899999999999999998877554322110 1
Q ss_pred ccccCCceeEEEeCCCCCEE-EEecCCe--EEeccCC
Q 000685 310 LACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHP 343 (1352)
Q Consensus 310 l~~hs~~V~svafspdg~lL-S~s~Dg~--IWDi~t~ 343 (1352)
..++-.....++++++|+++ +.+.+++ +||+.++
T Consensus 854 ~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 854 LKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred cccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 12223355689999999966 4455554 7988765
No 298
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.91 E-value=4.3e-05 Score=86.12 Aligned_cols=144 Identities=19% Similarity=0.253 Sum_probs=105.2
Q ss_pred CCCeeeeeecCCCCeEEEEEecCcEEE-EEeeCCc---cccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEE
Q 000685 120 TSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMR---GRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRV 195 (1352)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~D~~I~-wDl~t~~---~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrI 195 (1352)
.+.|.++.|.-.++ ++..|+.++.|+ +|+..+. ..+ .....|...|+|+..+ .-++++|++.+.+|+|++
T Consensus 252 ksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~-a~rlyh~Ssvtslq~L----q~s~q~LmaS~M~gkikL 325 (425)
T KOG2695|consen 252 KSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWC-AQRLYHDSSVTSLQIL----QFSQQKLMASDMTGKIKL 325 (425)
T ss_pred chhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcc-eEEEEcCcchhhhhhh----ccccceEeeccCcCceeE
Confidence 56788999998776 888899888884 5987652 212 2345788999998774 236888999999999999
Q ss_pred EECCCCeE---EEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEee
Q 000685 196 LSMISWKL---VRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELS 272 (1352)
Q Consensus 196 WDl~t~~~---i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafs 272 (1352)
||++--++ +..++ ||-+.-.-+- +...+....+++++.|...|||.++.+..+.++ .+.....+..+.+++|.
T Consensus 326 yD~R~~K~~~~V~qYe-GHvN~~a~l~-~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti--pf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 326 YDLRATKCKKSVMQYE-GHVNLSAYLP-AHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI--PFPYSASEVDIPSVAFD 401 (425)
T ss_pred eeehhhhcccceeeee-cccccccccc-cccccccceEEEccCeeEEEEEecccCceeecc--CCCCccccccccceehh
Confidence 99987666 88887 8876555443 235677788999999999999999999887653 22223333345666665
Q ss_pred c
Q 000685 273 R 273 (1352)
Q Consensus 273 p 273 (1352)
.
T Consensus 402 s 402 (425)
T KOG2695|consen 402 S 402 (425)
T ss_pred c
Confidence 3
No 299
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.90 E-value=0.008 Score=67.94 Aligned_cols=182 Identities=12% Similarity=-0.018 Sum_probs=113.9
Q ss_pred eeeeeec-CCCCeEEEEEecCcEEEEEeeCCccccccccc--c-CCCCeEEEEEeeccccCCCCEEEEEECC--------
Q 000685 123 FASPPPS-TKGRHFLVICCVNKAIFLDLVTMRGRDIPKQE--L-DNKSLVCMEFLSRSAVGDVPLVAFGSSD-------- 190 (1352)
Q Consensus 123 V~slafs-pdg~~lLasgs~D~~I~wDl~t~~~~~i~~~~--~-h~~~V~~vaf~P~s~Spdg~~LasGs~D-------- 190 (1352)
..++++. +++ .++++..++..++|..+++...+.... . .....+.+++ .++|++.++....
T Consensus 42 ~~G~~~~~~~g--~l~v~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~v-----d~~G~ly~t~~~~~~~~~~~~ 114 (246)
T PF08450_consen 42 PNGMAFDRPDG--RLYVADSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAV-----DPDGNLYVTDSGGGGASGIDP 114 (246)
T ss_dssp EEEEEEECTTS--EEEEEETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE------TTS-EEEEEECCBCTTCGGS
T ss_pred CceEEEEccCC--EEEEEEcCceEEEecCCCcEEEEeeccCCCcccCCCceEEE-----cCCCCEEEEecCCCccccccc
Confidence 3455566 554 455566677777788887654443332 1 3456788999 7789977776544
Q ss_pred CcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEE-EEEeCCCcEEEEeCCCCCc-cceecccccccccccceEE
Q 000685 191 GVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALL-VSGGSDGLLILWSADHGQD-SRELVPKLSLKAHDGGVVA 268 (1352)
Q Consensus 191 GtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~L-aSgS~DGtVrVWDl~tg~~-~~~~~~~~~l~gH~~~V~s 268 (1352)
|.|..++.. ++..... ..-...+.|+ ++++++.| ++-+..+.|..+++..... +........+....+..-.
T Consensus 115 g~v~~~~~~-~~~~~~~--~~~~~pNGi~---~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG 188 (246)
T PF08450_consen 115 GSVYRIDPD-GKVTVVA--DGLGFPNGIA---FSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDG 188 (246)
T ss_dssp EEEEEEETT-SEEEEEE--EEESSEEEEE---EETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEE
T ss_pred cceEEECCC-CeEEEEe--cCcccccceE---ECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCc
Confidence 557777776 5543333 2345567786 68898866 4667788999999864332 2211111112222234778
Q ss_pred EEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeC-CCCC
Q 000685 269 VELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRA-PNLD 327 (1352)
Q Consensus 269 lafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafs-pdg~ 327 (1352)
+++.. ++++.++....+.|.++|.+ |+.+..+.. ....+++++|. ++..
T Consensus 189 ~~vD~---~G~l~va~~~~~~I~~~~p~-G~~~~~i~~------p~~~~t~~~fgg~~~~ 238 (246)
T PF08450_consen 189 LAVDS---DGNLWVADWGGGRIVVFDPD-GKLLREIEL------PVPRPTNCAFGGPDGK 238 (246)
T ss_dssp EEEBT---TS-EEEEEETTTEEEEEETT-SCEEEEEE-------SSSSEEEEEEESTTSS
T ss_pred ceEcC---CCCEEEEEcCCCEEEEECCC-ccEEEEEcC------CCCCEEEEEEECCCCC
Confidence 99987 78888888889999999977 887777532 23367788884 5544
No 300
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.89 E-value=0.0039 Score=69.57 Aligned_cols=220 Identities=14% Similarity=0.048 Sum_probs=123.2
Q ss_pred CCCcEEEEECCCCcEEEEEeccC-ccceEE-eccccceeEecccccCCCccccccCCceEEEEEcCCeEEEEEcCCcccc
Q 000685 31 ASDHVSVWNWEHRQVIYELKAGG-VDQRRL-VGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAA 108 (1352)
Q Consensus 31 ~DG~VrVWDl~tg~~i~t~~~~~-~~~i~~-vs~dg~~Lasgs~d~~g~~l~~l~~g~V~sVaF~Dg~IrlWDl~t~~~i 108 (1352)
.+|+|..||..+|+.+.+..... ...... ...++..+..+. .++.+..||..+++.+
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~---------------------~~~~l~~~d~~tG~~~ 59 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVAS---------------------GDGNLYALDAKTGKVL 59 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEE---------------------TTSEEEEEETTTSEEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEc---------------------CCCEEEEEECCCCCEE
Confidence 37899999999999999997533 222221 112333333332 4677888888777654
Q ss_pred ccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEEEeeCCccccc-cccccC--C-CCeEEEEEeeccccCCCCEE
Q 000685 109 AAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDI-PKQELD--N-KSLVCMEFLSRSAVGDVPLV 184 (1352)
Q Consensus 109 ~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl~t~~~~~i-~~~~~h--~-~~V~~vaf~P~s~Spdg~~L 184 (1352)
-.. .. ...+.......++. +++...++.+..+|..+++..-. ...... . .......+ ++..+
T Consensus 60 W~~---~~---~~~~~~~~~~~~~~-v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-------~~~~~ 125 (238)
T PF13360_consen 60 WRF---DL---PGPISGAPVVDGGR-VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV-------DGDRL 125 (238)
T ss_dssp EEE---EC---SSCGGSGEEEETTE-EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE-------ETTEE
T ss_pred EEe---ec---cccccceeeecccc-cccccceeeeEecccCCcceeeeeccccccccccccccCceE-------ecCEE
Confidence 211 11 00111111222332 44443334444678888765322 111111 1 11222333 47889
Q ss_pred EEEECCCcEEEEECCCCeEEEEEecCCCCCe----------eEEEEeeeCCCCCEEEEEeCCCc-EEEEeCCCCCcccee
Q 000685 185 AFGSSDGVIRVLSMISWKLVRRYTGGHKGSI----------SCLMTFMASSGEALLVSGGSDGL-LILWSADHGQDSREL 253 (1352)
Q Consensus 185 asGs~DGtIrIWDl~t~~~i~~l~~gH~~~V----------~slawf~~s~dg~~LaSgS~DGt-VrVWDl~tg~~~~~~ 253 (1352)
+.+..++.|..+|.++|+.+.... .+.... .+-. ...++ .+..++.++. +.+ |+.+++.+..
T Consensus 126 ~~~~~~g~l~~~d~~tG~~~w~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~- 198 (238)
T PF13360_consen 126 YVGTSSGKLVALDPKTGKLLWKYP-VGEPRGSSPISSFSDINGSP---VISDG-RVYVSSGDGRVVAV-DLATGEKLWS- 198 (238)
T ss_dssp EEEETCSEEEEEETTTTEEEEEEE-SSTT-SS--EEEETTEEEEE---ECCTT-EEEEECCTSSEEEE-ETTTTEEEEE-
T ss_pred EEEeccCcEEEEecCCCcEEEEee-cCCCCCCcceeeecccccce---EEECC-EEEEEcCCCeEEEE-ECCCCCEEEE-
Confidence 999999999999999999988876 333221 1111 22244 6667777775 555 9999874322
Q ss_pred cccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEE
Q 000685 254 VPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRR 303 (1352)
Q Consensus 254 ~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~ 303 (1352)
.. ...+..+ ... ++..|+.++.|+.|..||+.+|+.+.+
T Consensus 199 -----~~--~~~~~~~-~~~---~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 199 -----KP--ISGIYSL-PSV---DGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp -----EC--SS-ECEC-EEC---CCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred -----ec--CCCccCC-cee---eCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 11 1112221 222 467788777999999999999987643
No 301
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.88 E-value=0.00028 Score=87.96 Aligned_cols=139 Identities=17% Similarity=0.236 Sum_probs=101.2
Q ss_pred CeEEEEEecCcEEEEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCC
Q 000685 133 RHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHK 212 (1352)
Q Consensus 133 ~~lLasgs~D~~I~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~ 212 (1352)
..++..|-.+.++.+|.++.+... ........|.-|.. +++++.+|...|+|.+-|.++.+.++++. .|+
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r--~~~v~a~~v~imR~-------Nnr~lf~G~t~G~V~LrD~~s~~~iht~~-aHs 217 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETR--TTNVSASGVTIMRY-------NNRNLFCGDTRGTVFLRDPNSFETIHTFD-AHS 217 (1118)
T ss_pred cceeecchhhheeeeecccceeee--eeeccCCceEEEEe-------cCcEEEeecccceEEeecCCcCceeeeee-ccc
Confidence 336777778888888998875432 22333334666666 78999999999999999999999999998 999
Q ss_pred CCeeEEEEeeeCCCCCEEEEEeC---------CCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEE
Q 000685 213 GSISCLMTFMASSGEALLVSGGS---------DGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLIT 283 (1352)
Q Consensus 213 ~~V~slawf~~s~dg~~LaSgS~---------DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaS 283 (1352)
+.|..+. -.|++|++|+. |..|+|||++.-+.+. | +.-|.+ ..-+.|+|. =...++.
T Consensus 218 ~siSDfD-----v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~---P---I~~~~~-P~flrf~Ps--l~t~~~V 283 (1118)
T KOG1275|consen 218 GSISDFD-----VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS---P---IQFPYG-PQFLRFHPS--LTTRLAV 283 (1118)
T ss_pred cceeeee-----ccCCeEEEeecccccccccccchhhhhhhhhhhccC---C---cccccC-chhhhhccc--ccceEEE
Confidence 9998764 47889999875 5668999998765432 2 122222 355778883 4567778
Q ss_pred EECCCcEEEEEC
Q 000685 284 IGADKTLAIWDT 295 (1352)
Q Consensus 284 gs~DgtV~IWDl 295 (1352)
++..|...+-|.
T Consensus 284 ~S~sGq~q~vd~ 295 (1118)
T KOG1275|consen 284 TSQSGQFQFVDT 295 (1118)
T ss_pred Eecccceeeccc
Confidence 887888777773
No 302
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.84 E-value=9.7e-05 Score=82.02 Aligned_cols=210 Identities=12% Similarity=0.125 Sum_probs=129.9
Q ss_pred CCCeeeeeecCCCCeEEEEEecCcEEEE--EeeCCcccc--ccccccC------------CCCeEEEEEeeccccCCC-C
Q 000685 120 TSGFASPPPSTKGRHFLVICCVNKAIFL--DLVTMRGRD--IPKQELD------------NKSLVCMEFLSRSAVGDV-P 182 (1352)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~D~~I~w--Dl~t~~~~~--i~~~~~h------------~~~V~~vaf~P~s~Spdg-~ 182 (1352)
...|+++.|...|. ++++|..+|.+++ +-....|.. ...++.| ...|..+.|. .+.+ .
T Consensus 26 ad~ItaVefd~tg~-YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~----~~t~r~ 100 (460)
T COG5170 26 ADKITAVEFDETGL-YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWF----DDTGRN 100 (460)
T ss_pred cceeeEEEeccccc-eEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeee----cCCCcc
Confidence 34688999999986 8999988888755 322222221 1112333 2357788885 2333 4
Q ss_pred EEEEEECCCcEEEEECCCC-------------------------------------eEE-----EEEecCCCCCeeEEEE
Q 000685 183 LVAFGSSDGVIRVLSMISW-------------------------------------KLV-----RRYTGGHKGSISCLMT 220 (1352)
Q Consensus 183 ~LasGs~DGtIrIWDl~t~-------------------------------------~~i-----~~l~~gH~~~V~slaw 220 (1352)
.++..+.|.+|++|.+... +.+ +.....|.-.|.++.
T Consensus 101 hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS- 179 (460)
T COG5170 101 HFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSIS- 179 (460)
T ss_pred eEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeee-
Confidence 5677779999999987432 001 111235666777776
Q ss_pred eeeCCCCCEEEEEeCCCcEEEEeCCCCCccceeccccccccc-----ccceEEEEeeccCCCCCEEEEEECCCcEEEEEC
Q 000685 221 FMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAH-----DGGVVAVELSRVMGGSPQLITIGADKTLAIWDT 295 (1352)
Q Consensus 221 f~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH-----~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl 295 (1352)
+..+...++| +.|-.|.+|++.-......+ ..++.| ..-|++..|||. ....+.-.+..|.|++-|+
T Consensus 180 --~NsD~et~lS-aDdLrINLWnl~i~D~sFnI---VDiKP~nmeeLteVItSaeFhp~--~cn~fmYSsSkG~Ikl~Dl 251 (460)
T COG5170 180 --FNSDKETLLS-ADDLRINLWNLEIIDGSFNI---VDIKPHNMEELTEVITSAEFHPE--MCNVFMYSSSKGEIKLNDL 251 (460)
T ss_pred --ecCchheeee-ccceeeeeccccccCCceEE---EeccCccHHHHHHHHhhcccCHh--HcceEEEecCCCcEEehhh
Confidence 6677777776 46889999998754332221 112333 345899999993 5677788888999999999
Q ss_pred CCCe-EE---EEe----cCC--CcccccCCceeEEEeCCCCCEEEEecCC--eEEeccCC
Q 000685 296 VSFK-EL---RRI----KPV--PKLACHSVASWCHPRAPNLDILTCVKDS--HIWAIEHP 343 (1352)
Q Consensus 296 ~tg~-~l---~~~----~~~--~~l~~hs~~V~svafspdg~lLS~s~Dg--~IWDi~t~ 343 (1352)
+... |. ..+ .++ .-+.+-...|..+.|+++|+++.+-.-. +|||++..
T Consensus 252 Rq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~ 311 (460)
T COG5170 252 RQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMA 311 (460)
T ss_pred hhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccc
Confidence 8321 11 011 111 1123334567889999999877543222 49999854
No 303
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.83 E-value=0.0002 Score=79.63 Aligned_cols=253 Identities=13% Similarity=0.198 Sum_probs=142.3
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-E----EEEEeccCc--------------cceEEecccc--ceeEe
Q 000685 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQ-V----IYELKAGGV--------------DQRRLVGAKL--EKLAE 69 (1352)
Q Consensus 11 s~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~-~----i~t~~~~~~--------------~~i~~vs~dg--~~Las 69 (1352)
.+.|+++.|...|.||+||+..|.|.++.-+... | ..+|+.|.. ..|..+.+.+ ..|++
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4679999999999999999999999999854322 2 222332211 1111111111 12222
Q ss_pred cccccCCCccccccCCceEEEEEcCCeEEEEEcCCccccc--------------------------------------cc
Q 000685 70 GELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAA--------------------------------------AE 111 (1352)
Q Consensus 70 gs~d~~g~~l~~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~--------------------------------------~~ 111 (1352)
+ .|.+|++|.+....... ..
T Consensus 106 t----------------------NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p 163 (460)
T COG5170 106 T----------------------NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKP 163 (460)
T ss_pred c----------------------CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecc
Confidence 2 68899999876541100 00
Q ss_pred cccccccCCCCeeeeeecCCCCeEEEEEecCcEEEEEeeC--CccccccccccC-----CCCeEEEEEeeccccCCCCEE
Q 000685 112 APTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVT--MRGRDIPKQELD-----NKSLVCMEFLSRSAVGDVPLV 184 (1352)
Q Consensus 112 ~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl~t--~~~~~i~~~~~h-----~~~V~~vaf~P~s~Spdg~~L 184 (1352)
.......|..-+.++.|+.|.+ .++++.+=++-.|++.- +.. .+.-.+.| ..-|++..|||. ....+
T Consensus 164 ~rvyaNaH~yhiNSiS~NsD~e-t~lSaDdLrINLWnl~i~D~sF-nIVDiKP~nmeeLteVItSaeFhp~----~cn~f 237 (460)
T COG5170 164 CRVYANAHPYHINSISFNSDKE-TLLSADDLRINLWNLEIIDGSF-NIVDIKPHNMEELTEVITSAEFHPE----MCNVF 237 (460)
T ss_pred ceeccccceeEeeeeeecCchh-eeeeccceeeeeccccccCCce-EEEeccCccHHHHHHHHhhcccCHh----HcceE
Confidence 0111123355678899998886 66666555555775432 221 11112333 346788899763 45677
Q ss_pred EEEECCCcEEEEECCCCeEE----EEE---ec-----CCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCC-ccc
Q 000685 185 AFGSSDGVIRVLSMISWKLV----RRY---TG-----GHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQ-DSR 251 (1352)
Q Consensus 185 asGs~DGtIrIWDl~t~~~i----~~l---~~-----gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~-~~~ 251 (1352)
...+..|.|++-|++...+. +.+ .. ..+.-|.++.-|.|+++|+++++-+. -+|++||++..+ ++.
T Consensus 238 mYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pik 316 (460)
T COG5170 238 MYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIK 316 (460)
T ss_pred EEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCce
Confidence 88889999999999843110 001 00 11223334433448999999988554 589999998654 222
Q ss_pred eecccccccc------cccce---EEEEeeccCCCCCEEEEEECCCcEEEEEC
Q 000685 252 ELVPKLSLKA------HDGGV---VAVELSRVMGGSPQLITIGADKTLAIWDT 295 (1352)
Q Consensus 252 ~~~~~~~l~g------H~~~V---~slafsp~~~dg~~LaSgs~DgtV~IWDl 295 (1352)
++.-...+.. ..+.| ..+.|+- +...+++|+..+..-+|-.
T Consensus 317 Ti~~h~~l~~~l~d~YEnDaifdkFeisfSg---d~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 317 TIPMHCDLMDELNDVYENDAIFDKFEISFSG---DDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred eechHHHHHHHHHhhhhccceeeeEEEEecC---Ccccccccccccceeeecc
Confidence 2100000100 11222 2355664 6677888887777666653
No 304
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.81 E-value=0.002 Score=72.08 Aligned_cols=208 Identities=18% Similarity=0.186 Sum_probs=106.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccC--C---ceE
Q 000685 14 IVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG--G---SVK 88 (1352)
Q Consensus 14 V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~--g---~V~ 88 (1352)
=+.++||||+..||.+...|+|+++|+. |..+..+..... .. .+...-++|- ...-.+. . .+.
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~-g~~lf~I~p~~~-~~----~d~~~Aiagl------~Fl~~~~s~~ws~ELl 113 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLM-GSELFVIPPAMS-FP----GDLSDAIAGL------IFLEYKKSAQWSYELL 113 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecc-cceeEEcCcccc-cC----Cccccceeee------EeeccccccccceeEE
Confidence 3579999999999999999999999976 455555543210 00 0000000000 0000000 0 111
Q ss_pred EEEEcCCeEEEEEcCCc--cccccc-cccccccCCCCeeeeeecCCCCeEEEEEecCcEEEEEeeCCccccccccccCCC
Q 000685 89 QVNFYDDDVRFWQLWRN--RAAAAE-APTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNK 165 (1352)
Q Consensus 89 sVaF~Dg~IrlWDl~t~--~~i~~~-~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl~t~~~~~i~~~~~h~~ 165 (1352)
.+. ++|.++-+-+..+ +..... ......+....|.++.|+|..+.+++.|+....-.. ......
T Consensus 114 vi~-Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~------------s~a~~~ 180 (282)
T PF15492_consen 114 VIN-YRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGM------------SKASSC 180 (282)
T ss_pred EEe-ccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcc------------cccccc
Confidence 111 5666666665332 111111 122233446689999999988745555544331000 011112
Q ss_pred CeEEEEEeeccccCCCCEEEEEECCCc------EEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcE
Q 000685 166 SLVCMEFLSRSAVGDVPLVAFGSSDGV------IRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1352)
Q Consensus 166 ~V~~vaf~P~s~Spdg~~LasGs~DGt------IrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtV 239 (1352)
.+++=..+ ..+|.... ++...|+. -.+|.+-+.+.... .......|..|. .+|||.+|++.+.+|.|
T Consensus 181 GLtaWRiL--~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~~fs~-~~~~~d~i~kmS---lSPdg~~La~ih~sG~l 253 (282)
T PF15492_consen 181 GLTAWRIL--SDSPYYKQ-VTSSEDDITASSKRRGLLRIPSFKFFSR-QGQEQDGIFKMS---LSPDGSLLACIHFSGSL 253 (282)
T ss_pred CceEEEEc--CCCCcEEE-ccccCccccccccccceeeccceeeeec-cccCCCceEEEE---ECCCCCEEEEEEcCCeE
Confidence 22222221 11122111 12222221 13344333222221 123567888887 89999999999999999
Q ss_pred EEEeCCCCCcccee
Q 000685 240 ILWSADHGQDSREL 253 (1352)
Q Consensus 240 rVWDl~tg~~~~~~ 253 (1352)
.+|++.+-...++|
T Consensus 254 sLW~iPsL~~~~~W 267 (282)
T PF15492_consen 254 SLWEIPSLRLQRSW 267 (282)
T ss_pred EEEecCcchhhccc
Confidence 99999987666554
No 305
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.78 E-value=0.0061 Score=68.34 Aligned_cols=231 Identities=17% Similarity=0.174 Sum_probs=122.9
Q ss_pred eeecCCCCeEEEEEecCcEEEE-----EeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCC
Q 000685 126 PPPSTKGRHFLVICCVNKAIFL-----DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS 200 (1352)
Q Consensus 126 lafspdg~~lLasgs~D~~I~w-----Dl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t 200 (1352)
++.+.+|+ +|++-.+. .+-+ |..+-..++ ...+.....-+-++| |||+.+|+.+...|+|++||+..
T Consensus 3 ~~~~~~Gk-~lAi~qd~-~iEiRsa~Ddf~si~~kc-qVpkD~~PQWRkl~W-----SpD~tlLa~a~S~G~i~vfdl~g 74 (282)
T PF15492_consen 3 LALSSDGK-LLAILQDQ-CIEIRSAKDDFSSIIGKC-QVPKDPNPQWRKLAW-----SPDCTLLAYAESTGTIRVFDLMG 74 (282)
T ss_pred eeecCCCc-EEEEEecc-EEEEEeccCCchheeEEE-ecCCCCCchheEEEE-----CCCCcEEEEEcCCCeEEEEeccc
Confidence 44567887 66655444 3422 222211111 112233345567999 88999999999999999999975
Q ss_pred CeEEEEEecCC------CCCeeEEEEeeeCCC---CCEEEEEeCCCcEEEEeCCCCCcc-ceeccccccccc-ccceEEE
Q 000685 201 WKLVRRYTGGH------KGSISCLMTFMASSG---EALLVSGGSDGLLILWSADHGQDS-RELVPKLSLKAH-DGGVVAV 269 (1352)
Q Consensus 201 ~~~i~~l~~gH------~~~V~slawf~~s~d---g~~LaSgS~DGtVrVWDl~tg~~~-~~~~~~~~l~gH-~~~V~sl 269 (1352)
.. +..+..++ ...|..+.+.....+ ...|+.-..+|.++-|-+..+... ......+.+..| ..+|+++
T Consensus 75 ~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~ 153 (282)
T PF15492_consen 75 SE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSA 153 (282)
T ss_pred ce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEE
Confidence 33 33443222 234555542111111 235666788999888876433211 111123344433 6789999
Q ss_pred EeeccCCCCCEEEEEECCCc-EEEEECCCCeEEEEecCCCcccccCCceeE---EEeCCCCCEEEEecCC--------eE
Q 000685 270 ELSRVMGGSPQLITIGADKT-LAIWDTVSFKELRRIKPVPKLACHSVASWC---HPRAPNLDILTCVKDS--------HI 337 (1352)
Q Consensus 270 afsp~~~dg~~LaSgs~Dgt-V~IWDl~tg~~l~~~~~~~~l~~hs~~V~s---vafspdg~lLS~s~Dg--------~I 337 (1352)
.|+| ..++|+.||.... -..+.. -...+++ +.-.|..+.++..+|+ .+
T Consensus 154 vy~p---~h~LLlVgG~~~~~~~~s~a-----------------~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~ 213 (282)
T PF15492_consen 154 VYHP---KHRLLLVGGCEQNQDGMSKA-----------------SSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGL 213 (282)
T ss_pred EEcC---CCCEEEEeccCCCCCccccc-----------------cccCceEEEEcCCCCcEEEccccCccccccccccce
Confidence 9999 5567766664222 101100 0001111 1112222222222222 13
Q ss_pred EeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCCC
Q 000685 338 WAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSL 403 (1352)
Q Consensus 338 WDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~~~ 403 (1352)
|.+-+.. ...........|..|..+| ++.+||+-+.+|.| .+|++-..
T Consensus 214 ~~~~~~~----------------~fs~~~~~~d~i~kmSlSP-dg~~La~ih~sG~l-sLW~iPsL 261 (282)
T PF15492_consen 214 LRIPSFK----------------FFSRQGQEQDGIFKMSLSP-DGSLLACIHFSGSL-SLWEIPSL 261 (282)
T ss_pred eecccee----------------eeeccccCCCceEEEEECC-CCCEEEEEEcCCeE-EEEecCcc
Confidence 3322110 0011122233899999999 78899999999997 79986543
No 306
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.74 E-value=0.00028 Score=90.72 Aligned_cols=166 Identities=17% Similarity=0.069 Sum_probs=125.2
Q ss_pred hhhhHHHhcCCHHHHHHHHhhcChhhHHHHHHHHHhCCcchhhcccccccCccEEEeecccccHHHHH-HHHhhcccccc
Q 000685 906 IRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGMGYATEALHLPGISKRLEFDLAMQSNDLKRAL-QCLITMSNSRD 984 (1352)
Q Consensus 906 ~~f~~~~~~~d~~~a~~~~~~i~~~~~~~~a~fl~~~G~~e~Al~~~~ds~~~kf~la~~~g~l~~a~-~~~~~~~~~~~ 984 (1352)
-+|+.-...|+|++|+.-|..++..+.+..-.|.+++|.+.+||.++.-.++.+ +..+ -.| +.
T Consensus 885 rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~----------k~i~~~ya------~h 948 (1265)
T KOG1920|consen 885 RKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQ----------KVIYEAYA------DH 948 (1265)
T ss_pred hheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHH----------HHHHHHHH------HH
Confidence 345566666999999999999999999999999999999999999974421111 1111 122 11
Q ss_pred cCCCCCCCCccccccccccchhhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcccccccccchhhHH
Q 000685 985 IGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLAL 1064 (1352)
Q Consensus 985 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~l 1064 (1352)
+.++ .+|..=+=.....|+++.|.+||+.+ + |+++++-
T Consensus 949 L~~~------------------------------~~~~~Aal~Ye~~GklekAl~a~~~~---~---------dWr~~l~ 986 (1265)
T KOG1920|consen 949 LREE------------------------------LMSDEAALMYERCGKLEKALKAYKEC---G---------DWREALS 986 (1265)
T ss_pred HHHh------------------------------ccccHHHHHHHHhccHHHHHHHHHHh---c---------cHHHHHH
Confidence 1122 67877788889999999999999999 6 5566654
Q ss_pred HHh-ccCChhHH----HHHHHHHHHcCCcHHHHHHHH-HcCCHHHHHHHHHHcCCcHHHHHHHHHcCCCch
Q 000685 1065 RLA-NHGELTRL----SGLVTNLISLGLGREAAFSAA-ILGDNALMEKAWQDTGMLAEAVLHAHAHGRPSL 1129 (1352)
Q Consensus 1065 l~~-~~g~~~~l----~~l~~~a~~~~~~~~~af~~~-~lgd~~~~~~~l~~~~~~~~A~~~A~t~~~~~~ 1129 (1352)
+.. ..-+.+.+ .+|+..+.++++...+|-... +++|+++++.+|++..+|.+|.+.|..+....+
T Consensus 987 ~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~ka~~~~eAlrva~~~~~~d~ 1057 (1265)
T KOG1920|consen 987 LAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCKAKEWEEALRVASKAKRDDI 1057 (1265)
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHHHhcccchH
Confidence 443 23334444 467777788888757777777 999999999999999999999999999996554
No 307
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.71 E-value=0.022 Score=69.25 Aligned_cols=276 Identities=15% Similarity=0.079 Sum_probs=139.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCCceEEEEEcCCeEEEEEc
Q 000685 23 HPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQL 102 (1352)
Q Consensus 23 g~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~sVaF~Dg~IrlWDl 102 (1352)
+..+++++.+|.|.-+|..+|+.+++...........- ..+..+. + .....++.|. +...++.+..+|.
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~-~~~~~~~-~--------~~~v~~~~v~-v~~~~g~l~ald~ 137 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSK-NKSALLS-G--------GVTVAGGKVY-IGSEKGQVYALNA 137 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCccccccc-ccccccc-c--------ccEEECCEEE-EEcCCCEEEEEEC
Confidence 56788888899999999999999998875431110000 0000000 0 0001112222 1114677888888
Q ss_pred CCccccccccccccccCCCCeee-eeecCCCCeEEEEEecCc-EEEEEeeCCccccccccccCCCCeEEE--EEeecccc
Q 000685 103 WRNRAAAAEAPTAVSNVTSGFAS-PPPSTKGRHFLVICCVNK-AIFLDLVTMRGRDIPKQELDNKSLVCM--EFLSRSAV 178 (1352)
Q Consensus 103 ~t~~~i~~~~~~~~~~~~~~V~s-lafspdg~~lLasgs~D~-~I~wDl~t~~~~~i~~~~~h~~~V~~v--af~P~s~S 178 (1352)
.+++.+- ..... ..+.+ ... .++ .++++..++ ++.+|..+++..-. .... .+...+ .-.|.
T Consensus 138 ~tG~~~W---~~~~~---~~~~ssP~v-~~~--~v~v~~~~g~l~ald~~tG~~~W~--~~~~-~~~~~~~~~~sP~--- 202 (394)
T PRK11138 138 EDGEVAW---QTKVA---GEALSRPVV-SDG--LVLVHTSNGMLQALNESDGAVKWT--VNLD-VPSLTLRGESAPA--- 202 (394)
T ss_pred CCCCCcc---cccCC---CceecCCEE-ECC--EEEEECCCCEEEEEEccCCCEeee--ecCC-CCcccccCCCCCE---
Confidence 8776542 11111 11111 111 133 344444444 44668888764321 1111 000000 00110
Q ss_pred CCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCC---CeeEEEEeeeCC--CCCEEEEEeCCCcEEEEeCCCCCcccee
Q 000685 179 GDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKG---SISCLMTFMASS--GEALLVSGGSDGLLILWSADHGQDSREL 253 (1352)
Q Consensus 179 pdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~---~V~slawf~~s~--dg~~LaSgS~DGtVrVWDl~tg~~~~~~ 253 (1352)
-.+..++.++.+|.+..+|..+++.+......... .+..+.-...+| .+..++.++.+|.+..+|..+|+.+.+.
T Consensus 203 v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 203 TAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR 282 (394)
T ss_pred EECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee
Confidence 02345777888999999999988766544211110 000000000111 2456777788999999999999865431
Q ss_pred cccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEEEEec
Q 000685 254 VPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVK 333 (1352)
Q Consensus 254 ~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lLS~s~ 333 (1352)
.+. ....+.. .+..++.++.|+.+..+|..+|+.+.+.... . +. ...+... -++.++.++.
T Consensus 283 ----~~~----~~~~~~~-----~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~---~-~~-~~~sp~v-~~g~l~v~~~ 343 (394)
T PRK11138 283 ----EYG----SVNDFAV-----DGGRIYLVDQNDRVYALDTRGGVELWSQSDL---L-HR-LLTAPVL-YNGYLVVGDS 343 (394)
T ss_pred ----cCC----CccCcEE-----ECCEEEEEcCCCeEEEEECCCCcEEEccccc---C-CC-cccCCEE-ECCEEEEEeC
Confidence 111 1111222 3457778889999999999999876543211 1 10 0111111 2566777888
Q ss_pred CCeE--EeccCC
Q 000685 334 DSHI--WAIEHP 343 (1352)
Q Consensus 334 Dg~I--WDi~t~ 343 (1352)
||.| .|..++
T Consensus 344 ~G~l~~ld~~tG 355 (394)
T PRK11138 344 EGYLHWINREDG 355 (394)
T ss_pred CCEEEEEECCCC
Confidence 8875 454444
No 308
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.70 E-value=0.0021 Score=70.74 Aligned_cols=208 Identities=12% Similarity=0.052 Sum_probs=133.1
Q ss_pred EEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCC
Q 000685 168 VCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHG 247 (1352)
Q Consensus 168 ~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg 247 (1352)
..+.|.|.++-....+|+.|+..|...+|...+.+....+-..|...|.-+.- .....-.+..++.|.++++.++..+
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r--~cd~~~~~~i~sndht~k~~~~~~~ 148 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKR--YCDLKFPLNIASNDHTGKTMVVSGD 148 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhh--hcccccceeeccCCcceeEEEEecC
Confidence 44677776555567789999999999999998765544443356665554331 1122334667789999999998755
Q ss_pred Cccceeccccccccccc--ceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCe-EEEEecCCCcccccCCceeEEEeCC
Q 000685 248 QDSRELVPKLSLKAHDG--GVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK-ELRRIKPVPKLACHSVASWCHPRAP 324 (1352)
Q Consensus 248 ~~~~~~~~~~~l~gH~~--~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~-~l~~~~~~~~l~~hs~~V~svafsp 324 (1352)
..-. .-|.. .++++.+++ +++++++.++...|..|.+.... .+..+ .....+..-.+..|+.
T Consensus 149 s~~~--------~~h~~~~~~ns~~~sn---d~~~~~~Vgds~~Vf~y~id~~sey~~~~----~~a~t~D~gF~~S~s~ 213 (344)
T KOG4532|consen 149 SNKF--------AVHNQNLTQNSLHYSN---DPSWGSSVGDSRRVFRYAIDDESEYIENI----YEAPTSDHGFYNSFSE 213 (344)
T ss_pred cccc--------eeeccccceeeeEEcC---CCceEEEecCCCcceEEEeCCccceeeee----EecccCCCceeeeecc
Confidence 3211 22332 288999998 89999999999999999987533 22221 1223334445788887
Q ss_pred CCCEE-EEecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCC-cEEEEEECCCeEEEEecC
Q 000685 325 NLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQP-HLVATGTNVGVIISEFDP 400 (1352)
Q Consensus 325 dg~lL-S~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~-~lLatGs~DG~IlriWd~ 400 (1352)
....+ ++..||+ |||++.... +..... .-++|....+..+.|++-+. .+|+..-.-+.+ ++.|+
T Consensus 214 ~~~~FAv~~Qdg~~~I~DVR~~~t-----pm~~~s------strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~-hv~D~ 281 (344)
T KOG4532|consen 214 NDLQFAVVFQDGTCAIYDVRNMAT-----PMAEIS------STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRV-HVVDT 281 (344)
T ss_pred CcceEEEEecCCcEEEEEeccccc-----chhhhc------ccCCCCCCceEEEEecCCCcceEEEEecCcceE-EEEEc
Confidence 76644 6889996 899985421 111111 22334445899999997332 344444444554 68888
Q ss_pred CCCC
Q 000685 401 RSLP 404 (1352)
Q Consensus 401 ~~~p 404 (1352)
|...
T Consensus 282 R~~~ 285 (344)
T KOG4532|consen 282 RNYV 285 (344)
T ss_pred ccCc
Confidence 7643
No 309
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.00029 Score=82.81 Aligned_cols=193 Identities=15% Similarity=0.198 Sum_probs=125.8
Q ss_pred cCCeEEEEEcCCccc-cc-cccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEEEeeCCcccc-ccc--cccCCCCe
Q 000685 93 YDDDVRFWQLWRNRA-AA-AEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRD-IPK--QELDNKSL 167 (1352)
Q Consensus 93 ~Dg~IrlWDl~t~~~-i~-~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl~t~~~~~-i~~--~~~h~~~V 167 (1352)
.|+++++|.++...- +. .........|...|.++.|-.+.+ . +..+++++..||.--++... +.. .......|
T Consensus 755 kDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~-i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~i 832 (1034)
T KOG4190|consen 755 KDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-S-IASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNI 832 (1034)
T ss_pred CCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-e-eeeccCcceeecccccchhHhhhcCcccCCCcee
Confidence 689999999865321 11 011223344588899999998875 4 44566777799876654322 111 12223445
Q ss_pred EEEEEeeccccCCCCEEEEE-ECCCcEEEEECCCCeEEEEEe----cCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEE
Q 000685 168 VCMEFLSRSAVGDVPLVAFG-SSDGVIRVLSMISWKLVRRYT----GGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1352)
Q Consensus 168 ~~vaf~P~s~Spdg~~LasG-s~DGtIrIWDl~t~~~i~~l~----~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVW 242 (1352)
.|+.- -+...++.| +...+|+++|.+.++....+. .+-+..+.+++ ..+.|++++.+-.+|+|.+.
T Consensus 833 kcl~n------v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia---Va~~GN~lAa~LSnGci~~L 903 (1034)
T KOG4190|consen 833 KCLEN------VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA---VADKGNKLAAALSNGCIAIL 903 (1034)
T ss_pred Eeccc------CcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE---eccCcchhhHHhcCCcEEEE
Confidence 55432 345555554 788999999999876655443 23456678886 78899999999999999999
Q ss_pred eCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEE-EECCCCeEEEEecC
Q 000685 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAI-WDTVSFKELRRIKP 306 (1352)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~I-WDl~tg~~l~~~~~ 306 (1352)
|.++|+.+..|.| .+.....++- | ....|+....|.++.+ |...+|....+.++
T Consensus 904 DaR~G~vINswrp------mecdllqlaa-p---sdq~L~~saldHslaVnWhaldgimh~q~kp 958 (1034)
T KOG4190|consen 904 DARNGKVINSWRP------MECDLLQLAA-P---SDQALAQSALDHSLAVNWHALDGIMHLQDKP 958 (1034)
T ss_pred ecCCCceeccCCc------ccchhhhhcC-c---hhHHHHhhcccceeEeeehhcCCeeeeccCC
Confidence 9999998776533 2222222332 2 3467777778888888 98777776555444
No 310
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.66 E-value=0.032 Score=64.36 Aligned_cols=242 Identities=16% Similarity=0.126 Sum_probs=141.5
Q ss_pred CCEEEEEEcCCCC-EEEEEeCCC-cEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCCceEE
Q 000685 12 DKIVKIQLHPTHP-WLVTADASD-HVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQ 89 (1352)
Q Consensus 12 ~~V~~lafSPdg~-~LaTgs~DG-~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~s 89 (1352)
.+...++.+|+.. .++.+-.-| ...+||..+|+.+..+.... +
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~----------g------------------------- 49 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPP----------G------------------------- 49 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCC----------C-------------------------
Confidence 4566789999544 566665554 56789999988887765321 0
Q ss_pred EEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEe-----cCcEE-EEEeeCCccccccccccC
Q 000685 90 VNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICC-----VNKAI-FLDLVTMRGRDIPKQELD 163 (1352)
Q Consensus 90 VaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs-----~D~~I-~wDl~t~~~~~i~~~~~h 163 (1352)
..+.+| -.||+||+ +|.+.- ..+.| +||... ....+..+..+
T Consensus 50 -----------------------RHFyGH-------g~fs~dG~-~LytTEnd~~~g~G~IgVyd~~~-~~~ri~E~~s~ 97 (305)
T PF07433_consen 50 -----------------------RHFYGH-------GVFSPDGR-LLYTTENDYETGRGVIGVYDAAR-GYRRIGEFPSH 97 (305)
T ss_pred -----------------------CEEecC-------EEEcCCCC-EEEEeccccCCCcEEEEEEECcC-CcEEEeEecCC
Confidence 112222 34677776 444432 23455 556662 23344445555
Q ss_pred CCCeEEEEEeeccccCCCCEEEEEEC------------------CCcEEEEECCCCeEEEEEe---cCCCCCeeEEEEee
Q 000685 164 NKSLVCMEFLSRSAVGDVPLVAFGSS------------------DGVIRVLSMISWKLVRRYT---GGHKGSISCLMTFM 222 (1352)
Q Consensus 164 ~~~V~~vaf~P~s~Spdg~~LasGs~------------------DGtIrIWDl~t~~~i~~l~---~gH~~~V~slawf~ 222 (1352)
.-....+.+ .|||+.|+++.- +-++.+.|..+++.+.+.. .-|..+|..++
T Consensus 98 GIGPHel~l-----~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa--- 169 (305)
T PF07433_consen 98 GIGPHELLL-----MPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLA--- 169 (305)
T ss_pred CcChhhEEE-----cCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEE---
Confidence 555666777 557766666531 3356666777787776632 23667788776
Q ss_pred eCCCCCEEEEEeCCCc-------EEEEeCCCCCcccee-cccccccccccceEEEEeeccCCCCCEE-EEEECCCcEEEE
Q 000685 223 ASSGEALLVSGGSDGL-------LILWSADHGQDSREL-VPKLSLKAHDGGVVAVELSRVMGGSPQL-ITIGADKTLAIW 293 (1352)
Q Consensus 223 ~s~dg~~LaSgS~DGt-------VrVWDl~tg~~~~~~-~~~~~l~gH~~~V~slafsp~~~dg~~L-aSgs~DgtV~IW 293 (1352)
...+|..++..-..|. |-+++.. +.+..+ .+.-....-.+.+-+|+++. ++.++ +|+-.-+.+.+|
T Consensus 170 ~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~---~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 170 VDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADR---DGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred ecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeC---CCCEEEEECCCCCEEEEE
Confidence 5667666555444332 2233322 211110 01111233446688999998 66655 555578899999
Q ss_pred ECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEEEEecCCeEEeccC
Q 000685 294 DTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAIEH 342 (1352)
Q Consensus 294 Dl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lLS~s~Dg~IWDi~t 342 (1352)
|..+++.+.... -..+..++..+++ ++..+..|.++.+..
T Consensus 245 d~~tg~~~~~~~--------l~D~cGva~~~~~-f~~ssG~G~~~~~~~ 284 (305)
T PF07433_consen 245 DAATGRLLGSVP--------LPDACGVAPTDDG-FLVSSGQGQLIRLSP 284 (305)
T ss_pred ECCCCCEeeccc--------cCceeeeeecCCc-eEEeCCCccEEEccC
Confidence 999999876521 2234466666666 666666677776664
No 311
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.0021 Score=79.93 Aligned_cols=185 Identities=12% Similarity=0.062 Sum_probs=119.4
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCCceEEEE
Q 000685 12 DKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVN 91 (1352)
Q Consensus 12 ~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~sVa 91 (1352)
+.++|+++| +++|+-|.++|.|++.+.. |.. .+...+ .. ...+|.++++|+
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~-s~----~~~~Gey~asCS-------------------- 90 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDH-SS----SILEGEYVASCS-------------------- 90 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecC-Ccc-cccccc-cc----cccCCceEEEec--------------------
Confidence 567788888 6899999999999999965 333 222111 11 146788999987
Q ss_pred EcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCC----CCeEEEEEecCcEEEEEeeCCccccccccccCCCCe
Q 000685 92 FYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTK----GRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSL 167 (1352)
Q Consensus 92 F~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspd----g~~lLasgs~D~~I~wDl~t~~~~~i~~~~~h~~~V 167 (1352)
.||++.+-.+.+.+.. .......++.+++++|+ ....+++|+.-|++...-.....+.-.......++|
T Consensus 91 -~DGkv~I~sl~~~~~~------~~~df~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I 163 (846)
T KOG2066|consen 91 -DDGKVVIGSLFTDDEI------TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPI 163 (846)
T ss_pred -CCCcEEEeeccCCccc------eeEecCCcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccce
Confidence 5666666665554332 11222557889999998 112678888888554311111111111244557899
Q ss_pred EEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCC-----CeeEEEEeeeCCCCCEEEEEeCCCcEEEE
Q 000685 168 VCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKG-----SISCLMTFMASSGEALLVSGGSDGLLILW 242 (1352)
Q Consensus 168 ~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~-----~V~slawf~~s~dg~~LaSgS~DGtVrVW 242 (1352)
.++.| .|++|+-++++| |++||..+++.+..+...|.. .-..+.|. +...|+.|-. .+|+|.
T Consensus 164 ~~i~W-------~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~----~~~~LVIGW~-d~v~i~ 230 (846)
T KOG2066|consen 164 HSIKW-------RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQ----DEDRLVIGWG-DSVKIC 230 (846)
T ss_pred EEEEe-------cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEec----CCCeEEEecC-CeEEEE
Confidence 99999 699999999888 899999998888777544422 22334442 4456666544 478888
Q ss_pred eCC
Q 000685 243 SAD 245 (1352)
Q Consensus 243 Dl~ 245 (1352)
.++
T Consensus 231 ~I~ 233 (846)
T KOG2066|consen 231 SIK 233 (846)
T ss_pred EEe
Confidence 887
No 312
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.60 E-value=0.011 Score=72.53 Aligned_cols=194 Identities=9% Similarity=-0.063 Sum_probs=112.9
Q ss_pred CEEEEEEcCCCCE-EEEEeCC---CcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCCceE
Q 000685 13 KIVKIQLHPTHPW-LVTADAS---DHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVK 88 (1352)
Q Consensus 13 ~V~~lafSPdg~~-LaTgs~D---G~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~ 88 (1352)
.+..-.|||||++ ++..+.+ ..|.++|+.+|+...-............+|||+.|+......
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~-------------- 254 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPK-------------- 254 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccC--------------
Confidence 5678999999985 6644433 568889998887655443222222334568988776543211
Q ss_pred EEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecC---cEEEEEeeCCccccccccccCCC
Q 000685 89 QVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVN---KAIFLDLVTMRGRDIPKQELDNK 165 (1352)
Q Consensus 89 sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D---~~I~wDl~t~~~~~i~~~~~h~~ 165 (1352)
.+..|.++|+.++.... ...+ ........|+|||+.++.+.... .+.++|+.+++.+.+.. ...
T Consensus 255 ----g~~~Iy~~dl~~g~~~~-----LT~~-~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~---~g~ 321 (419)
T PRK04043 255 ----GQPDIYLYDTNTKTLTQ-----ITNY-PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF---HGK 321 (419)
T ss_pred ----CCcEEEEEECCCCcEEE-----cccC-CCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc---CCC
Confidence 24567777877664321 1111 11223457999998555544333 33455888776544321 111
Q ss_pred CeEEEEEeeccccCCCCEEEEEECC---------CcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCC
Q 000685 166 SLVCMEFLSRSAVGDVPLVAFGSSD---------GVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSD 236 (1352)
Q Consensus 166 ~V~~vaf~P~s~Spdg~~LasGs~D---------GtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~D 236 (1352)
. ...| ||+|++|+..+.. ..|.+.|+.++.. +.+. .+ ....... ++|||+.|+-.+.+
T Consensus 322 ~--~~~~-----SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT-~~-~~~~~p~---~SPDG~~I~f~~~~ 388 (419)
T PRK04043 322 N--NSSV-----STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLT-AN-GVNQFPR---FSSDGGSIMFIKYL 388 (419)
T ss_pred c--CceE-----CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECC-CC-CCcCCeE---ECCCCCEEEEEEcc
Confidence 2 2367 8899998877654 2678889887765 3443 22 2222343 68999987765543
Q ss_pred -Cc--EEEEeCCC
Q 000685 237 -GL--LILWSADH 246 (1352)
Q Consensus 237 -Gt--VrVWDl~t 246 (1352)
+. +.+.++..
T Consensus 389 ~~~~~L~~~~l~g 401 (419)
T PRK04043 389 GNQSALGIIRLNY 401 (419)
T ss_pred CCcEEEEEEecCC
Confidence 22 44555543
No 313
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.59 E-value=0.00012 Score=89.46 Aligned_cols=61 Identities=11% Similarity=0.110 Sum_probs=33.1
Q ss_pred CceEEECCCccEEEEEeeeEEEEEeccccccccccccccccccceeeeeeeEE--ecCCcceEEeec
Q 000685 687 PEWTAWDQTVEYCAFAYQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLFV--VTPTTIECVFVD 751 (1352)
Q Consensus 687 ~~~~~w~~~~~~~a~~~~~~i~i~~~~~~~~~~~~~~~~~~~s~~w~~~~~f~--~t~~~i~~~~~~ 751 (1352)
++.++= |.++++...+.|.+|+.... +.+.+..++.++..+|...+-+| .|.+.|-..-.+
T Consensus 111 ~~~If~---G~LL~~~~~~~i~~yDw~~~-~~i~~i~v~~vk~V~Ws~~g~~val~t~~~i~il~~~ 173 (443)
T PF04053_consen 111 VEKIFG---GNLLGVKSSDFICFYDWETG-KLIRRIDVSAVKYVIWSDDGELVALVTKDSIYILKYN 173 (443)
T ss_dssp EEEEE----SSSEEEEETTEEEEE-TTT---EEEEESS-E-EEEEE-TTSSEEEEE-S-SEEEEEE-
T ss_pred cceEEc---CcEEEEECCCCEEEEEhhHc-ceeeEEecCCCcEEEEECCCCEEEEEeCCeEEEEEec
Confidence 455553 77788788888999988532 34555556546888998653333 666666554333
No 314
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.56 E-value=0.00022 Score=56.26 Aligned_cols=39 Identities=38% Similarity=0.644 Sum_probs=35.4
Q ss_pred CeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEe
Q 000685 201 WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243 (1352)
Q Consensus 201 ~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWD 243 (1352)
|+++..+. +|.+.|.+++ ++|++++|++|+.|++|++||
T Consensus 1 g~~~~~~~-~h~~~i~~i~---~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFR-GHSSSINSIA---WSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEE-SSSSSEEEEE---EETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEc-CCCCcEEEEE---EecccccceeeCCCCEEEEEC
Confidence 46778887 9999999998 688899999999999999997
No 315
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.51 E-value=0.011 Score=68.20 Aligned_cols=199 Identities=14% Similarity=0.091 Sum_probs=116.7
Q ss_pred EEEcCCCCEEEEEeC-----CCcEEEEECC-CCcEEEEEeccCccceEE-eccccceeEeccccc-----CCCccccccC
Q 000685 17 IQLHPTHPWLVTADA-----SDHVSVWNWE-HRQVIYELKAGGVDQRRL-VGAKLEKLAEGELEH-----KGKPTEAMRG 84 (1352)
Q Consensus 17 lafSPdg~~LaTgs~-----DG~VrVWDl~-tg~~i~t~~~~~~~~i~~-vs~dg~~Lasgs~d~-----~g~~l~~l~~ 84 (1352)
-.||+||++|+|.-. .|.|-|||.. +-+.+.+|..++.+.--+ +.+|++.|+.+-..- .++..
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~k----- 130 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAK----- 130 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCcee-----
Confidence 689999999998744 4899999998 668888998776655443 348887776653110 01111
Q ss_pred CceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-----EE-EeeCCc-cccc
Q 000685 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-----FL-DLVTMR-GRDI 157 (1352)
Q Consensus 85 g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-----~w-Dl~t~~-~~~i 157 (1352)
..+.-.+-.+.+.|..+++.+.. ......++...|+.+++..+|. .++..-..+-- .+ -...+. ...+
T Consensus 131 ---LNl~tM~psL~~ld~~sG~ll~q-~~Lp~~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~ 205 (305)
T PF07433_consen 131 ---LNLDTMQPSLVYLDARSGALLEQ-VELPPDLHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRGGALRLL 205 (305)
T ss_pred ---cChhhcCCceEEEecCCCceeee-eecCccccccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCCCcceec
Confidence 01111344566666666655421 1111234466799999999986 44444322210 11 111111 1111
Q ss_pred c----ccccCCCCeEEEEEeeccccCCCCEEEEEE-CCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEE
Q 000685 158 P----KQELDNKSLVCMEFLSRSAVGDVPLVAFGS-SDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVS 232 (1352)
Q Consensus 158 ~----~~~~h~~~V~~vaf~P~s~Spdg~~LasGs-~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaS 232 (1352)
. ....-..++-+|++ +.++.++++.| ..+.+.+||..+++.+.... -..+..++ ...++ +++|
T Consensus 206 ~~p~~~~~~l~~Y~gSIa~-----~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~---l~D~cGva---~~~~~-f~~s 273 (305)
T PF07433_consen 206 PAPEEQWRRLNGYIGSIAA-----DRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP---LPDACGVA---PTDDG-FLVS 273 (305)
T ss_pred cCChHHHHhhCCceEEEEE-----eCCCCEEEEECCCCCEEEEEECCCCCEeeccc---cCceeeee---ecCCc-eEEe
Confidence 0 01223679999999 67888775555 77899999999999876542 23455554 33333 5555
Q ss_pred EeCCCc
Q 000685 233 GGSDGL 238 (1352)
Q Consensus 233 gS~DGt 238 (1352)
.+ .|.
T Consensus 274 sG-~G~ 278 (305)
T PF07433_consen 274 SG-QGQ 278 (305)
T ss_pred CC-Ccc
Confidence 44 344
No 316
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.48 E-value=0.14 Score=60.62 Aligned_cols=349 Identities=12% Similarity=0.061 Sum_probs=192.7
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEE-------EeCCCcEEEEECCCCcEEEEEecc-CccceEEeccccceeEecccccC-
Q 000685 5 KAFRPTNDKIVKIQLHPTHPWLVT-------ADASDHVSVWNWEHRQVIYELKAG-GVDQRRLVGAKLEKLAEGELEHK- 75 (1352)
Q Consensus 5 ~~L~gHs~~V~~lafSPdg~~LaT-------gs~DG~VrVWDl~tg~~i~t~~~~-~~~~i~~vs~dg~~Lasgs~d~~- 75 (1352)
+.+..|-+-|+.-.|+|+|+++|- +...+.+.+.+.+.|+..+..-.+ ....+.--.++|+.+++...-..
T Consensus 72 ~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRiTyfGr~fT~VaG~~~dg~iiV~TD~~tPF 151 (668)
T COG4946 72 LRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRITYFGRRFTRVAGWIPDGEIIVSTDFHTPF 151 (668)
T ss_pred eEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEEEEeccccceeeccCCCCCEEEEeccCCCc
Confidence 456677788899999999998886 233466888888999876544433 12222223389998887653221
Q ss_pred ------------CCccccccCCceEEEEEcCCeEEE----EEcCCccccc-----ccccccccc--------CCCCeeee
Q 000685 76 ------------GKPTEAMRGGSVKQVNFYDDDVRF----WQLWRNRAAA-----AEAPTAVSN--------VTSGFASP 126 (1352)
Q Consensus 76 ------------g~~l~~l~~g~V~sVaF~Dg~Irl----WDl~t~~~i~-----~~~~~~~~~--------~~~~V~sl 126 (1352)
+--..-+.-|+...+.+.||.+.+ +|+...+.-+ ..+-...+. ....|++-
T Consensus 152 ~q~~~lYkv~~dg~~~e~LnlGpathiv~~dg~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~P 231 (668)
T COG4946 152 SQWTELYKVNVDGIKTEPLNLGPATHIVIKDGIIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSP 231 (668)
T ss_pred ccceeeeEEccCCceeeeccCCceeeEEEeCCEEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCc
Confidence 111222233677777777775554 2221111100 000000000 00111111
Q ss_pred eecCCCCeEEEEEecCc---EEEEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeE
Q 000685 127 PPSTKGRHFLVICCVNK---AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKL 203 (1352)
Q Consensus 127 afspdg~~lLasgs~D~---~I~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~ 203 (1352)
..-. ++ +......+| +...|+..... ..|... -.+.|+..+.||+.|+.. ..|.|.+||..+.+.
T Consensus 232 mIV~-~R-vYFlsD~eG~GnlYSvdldGkDl------rrHTnF---tdYY~R~~nsDGkrIvFq-~~GdIylydP~td~l 299 (668)
T COG4946 232 MIVG-ER-VYFLSDHEGVGNLYSVDLDGKDL------RRHTNF---TDYYPRNANSDGKRIVFQ-NAGDIYLYDPETDSL 299 (668)
T ss_pred eEEc-ce-EEEEecccCccceEEeccCCchh------hhcCCc---hhccccccCCCCcEEEEe-cCCcEEEeCCCcCcc
Confidence 1110 11 111111111 11223322211 122211 123333346789888765 568899999887544
Q ss_pred EEEEecC---C-----CCCeeEEEEe--eeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeec
Q 000685 204 VRRYTGG---H-----KGSISCLMTF--MASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSR 273 (1352)
Q Consensus 204 i~~l~~g---H-----~~~V~slawf--~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp 273 (1352)
.++.-+ . ...+.-+.+. +...+|++++..|. |...+.+...+-.+ -.+|..+|....+..
T Consensus 300 -ekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~i--------qv~~~~~VrY~r~~~ 369 (668)
T COG4946 300 -EKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSI--------QVGKKGGVRYRRIQV 369 (668)
T ss_pred -eeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeE--------EcCCCCceEEEEEcc
Confidence 233212 0 0011111100 12346788887764 55556555444322 246788888888876
Q ss_pred cCCCCCEEEEEECCC-cEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEEEEecCC-eEE--eccCCcccccc
Q 000685 274 VMGGSPQLITIGADK-TLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDS-HIW--AIEHPTYSALT 349 (1352)
Q Consensus 274 ~~~dg~~LaSgs~Dg-tV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lLS~s~Dg-~IW--Di~t~~~~~~~ 349 (1352)
++.-++.|..|| .+-|+|..+++.-+. ...-+.|.++..+++|+.++.+.|. .|| |+.++.
T Consensus 370 ---~~e~~vigt~dgD~l~iyd~~~~e~kr~-------e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn----- 434 (668)
T COG4946 370 ---DPEGDVIGTNDGDKLGIYDKDGGEVKRI-------EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN----- 434 (668)
T ss_pred ---CCcceEEeccCCceEEEEecCCceEEEe-------eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC-----
Confidence 667889999999 899999998774332 4556788899999999988777776 466 555542
Q ss_pred cCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEE---EEecCCC
Q 000685 350 RPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVII---SEFDPRS 402 (1352)
Q Consensus 350 ~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~Il---riWd~~~ 402 (1352)
...+......-|..++||| ++..+|-+--+|.+. +++|+..
T Consensus 435 -----------v~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 435 -----------VRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred -----------eeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCC
Confidence 1222222223799999999 688899888777542 6777665
No 317
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.43 E-value=6.2e-05 Score=90.63 Aligned_cols=215 Identities=16% Similarity=0.160 Sum_probs=138.8
Q ss_pred CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEE-EEEecCCCCCeeEEEEeeeCCCCCEEEEEeC----CCc
Q 000685 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLV-RRYTGGHKGSISCLMTFMASSGEALLVSGGS----DGL 238 (1352)
Q Consensus 164 ~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i-~~l~~gH~~~V~slawf~~s~dg~~LaSgS~----DGt 238 (1352)
..++.|+++.- ..+...++.|..+|.|.+-.++...-. ..+..+|..+.++++| ..-|.++|+.|-. |..
T Consensus 56 tqy~kcva~~y---~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAw--neLDtn~LAagldkhrnds~ 130 (783)
T KOG1008|consen 56 TQYVKCVASFY---GNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAW--NELDTNHLAAGLDKHRNDSS 130 (783)
T ss_pred CCCceeehhhc---CCchhhhhhccccCceEEeecCCcccccceeccccccccccccc--ccccHHHHHhhhhhhcccCC
Confidence 45788888742 234568899999999999988754322 4444589999999997 4557778887743 567
Q ss_pred EEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCcee
Q 000685 239 LILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASW 318 (1352)
Q Consensus 239 VrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~ 318 (1352)
+.|||+.++--...-.+.+.- +...+.++++|-. +.+++.+|...+.++++|++-. +.+. ....+..+.
T Consensus 131 ~~Iwdi~s~ltvPke~~~fs~-~~l~gqns~cwlr---d~klvlaGm~sr~~~ifdlRqs-~~~~------~svnTk~vq 199 (783)
T KOG1008|consen 131 LKIWDINSLLTVPKESPLFSS-STLDGQNSVCWLR---DTKLVLAGMTSRSVHIFDLRQS-LDSV------SSVNTKYVQ 199 (783)
T ss_pred ccceecccccCCCcccccccc-ccccCcccccccc---Ccchhhcccccchhhhhhhhhh-hhhh------hhhhhhhcc
Confidence 999999886221111112211 2455677889886 7889999999999999998721 1111 122334455
Q ss_pred EEEeCC-CCCEEEEecCCe--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEECCCeEE
Q 000685 319 CHPRAP-NLDILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVII 395 (1352)
Q Consensus 319 svafsp-dg~lLS~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~DG~Il 395 (1352)
.+.+.| .+.+++...||. +||.... ...++........ ...+ ++..++|+|....++++.+.|..++
T Consensus 200 G~tVdp~~~nY~cs~~dg~iAiwD~~rn----ienpl~~i~~~~N-----~~~~-~l~~~aycPtrtglla~l~RdS~tI 269 (783)
T KOG1008|consen 200 GITVDPFSPNYFCSNSDGDIAIWDTYRN----IENPLQIILRNEN-----KKPK-QLFALAYCPTRTGLLAVLSRDSITI 269 (783)
T ss_pred cceecCCCCCceeccccCceeeccchhh----hccHHHHHhhCCC-----Cccc-ceeeEEeccCCcchhhhhccCcceE
Confidence 667777 556777766774 8994211 1111111000000 0112 5889999998888888888888777
Q ss_pred EEecCCCCC
Q 000685 396 SEFDPRSLP 404 (1352)
Q Consensus 396 riWd~~~~p 404 (1352)
+++|+...+
T Consensus 270 rlydi~~v~ 278 (783)
T KOG1008|consen 270 RLYDICVVG 278 (783)
T ss_pred EEecccccC
Confidence 999887543
No 318
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.42 E-value=0.013 Score=71.64 Aligned_cols=175 Identities=12% Similarity=0.004 Sum_probs=105.0
Q ss_pred CeeeeeecCCCCeEEEEEecC---c-EEEEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEE-CC--CcEE
Q 000685 122 GFASPPPSTKGRHFLVICCVN---K-AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGS-SD--GVIR 194 (1352)
Q Consensus 122 ~V~slafspdg~~lLasgs~D---~-~I~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs-~D--GtIr 194 (1352)
......|+|||+.+++..+.+ . +.++|+.+++.+.+. ...+...+..| +|||+.++... .+ ..|.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt---~~~g~~~~~~~-----SPDG~~la~~~~~~g~~~Iy 260 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA---SSQGMLVVSDV-----SKDGSKLLLTMAPKGQPDIY 260 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe---cCCCcEEeeEE-----CCCCCEEEEEEccCCCcEEE
Confidence 566889999998534433322 2 335588888665542 23444556778 78998776543 33 4688
Q ss_pred EEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeC-CC--cEEEEeCCCCCccceecccccccccccceEEEEe
Q 000685 195 VLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS-DG--LLILWSADHGQDSRELVPKLSLKAHDGGVVAVEL 271 (1352)
Q Consensus 195 IWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~-DG--tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slaf 271 (1352)
++|+.+++.. .+. .+........ ++|||+.|+-.+. .+ .|.+.|+.+++..+- +..+. ....|
T Consensus 261 ~~dl~~g~~~-~LT-~~~~~d~~p~---~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl-----t~~g~----~~~~~ 326 (419)
T PRK04043 261 LYDTNTKTLT-QIT-NYPGIDVNGN---FVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV-----VFHGK----NNSSV 326 (419)
T ss_pred EEECCCCcEE-Ecc-cCCCccCccE---ECCCCCEEEEEECCCCCceEEEEECCCCCeEeC-----ccCCC----cCceE
Confidence 8888877643 343 3333222333 6899987776653 33 577778877654221 11222 12489
Q ss_pred eccCCCCCEEEEEECC---------CcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEE
Q 000685 272 SRVMGGSPQLITIGAD---------KTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL 329 (1352)
Q Consensus 272 sp~~~dg~~LaSgs~D---------gtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lL 329 (1352)
+| ++++|+-.+.. ..|.+.|+.++.. +.+. ... ......|+|||+.|
T Consensus 327 SP---DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT------~~~-~~~~p~~SPDG~~I 382 (419)
T PRK04043 327 ST---YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLT------ANG-VNQFPRFSSDGGSI 382 (419)
T ss_pred CC---CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECC------CCC-CcCCeEECCCCCEE
Confidence 99 78877766543 3678889887764 3321 111 12257899999965
No 319
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.013 Score=73.62 Aligned_cols=203 Identities=15% Similarity=0.138 Sum_probs=123.3
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec--cccceeEecccccCCCccccccCCceEEEEEcCC
Q 000685 18 QLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDD 95 (1352)
Q Consensus 18 afSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~~l~~g~V~sVaF~Dg 95 (1352)
.|++.+..++.|+.+|.|.+.| ..-+.++.|+....+-+..+- .+...|++...|..+. ..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~n----------------p~ 92 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGN----------------PV 92 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCC----------------ce
Confidence 3567788999999999988877 334555777765544233333 2334666655443221 12
Q ss_pred eEEEEEcCCcc------cc--ccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEE---EeeCCccccccccccCC
Q 000685 96 DVRFWQLWRNR------AA--AAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL---DLVTMRGRDIPKQELDN 164 (1352)
Q Consensus 96 ~IrlWDl~t~~------~i--~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~w---Dl~t~~~~~i~~~~~h~ 164 (1352)
.+++|++...+ |+ +...+........++.+++.+.+-+ .+|+|-.||.|.. |....+...........
T Consensus 93 llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~ 171 (933)
T KOG2114|consen 93 LLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK 171 (933)
T ss_pred EEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccceeeeccCC
Confidence 68999986542 22 0111111122255788888888875 8999999999844 55433333333334457
Q ss_pred CCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeC
Q 000685 165 KSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSA 244 (1352)
Q Consensus 165 ~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl 244 (1352)
.+|+.+.+ ..++..++....-..|.+|.+....+.......|...+.|.. +++....|++++ +..|.+||.
T Consensus 172 ~pITgL~~-----~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss---~~~~t~qfIca~-~e~l~fY~s 242 (933)
T KOG2114|consen 172 EPITGLAL-----RSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSS---FSDGTYQFICAG-SEFLYFYDS 242 (933)
T ss_pred CCceeeEE-----ecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeee---cCCCCccEEEec-CceEEEEcC
Confidence 89999999 446665344444556999999854433332336777888876 454444344433 457889988
Q ss_pred CCC
Q 000685 245 DHG 247 (1352)
Q Consensus 245 ~tg 247 (1352)
...
T Consensus 243 d~~ 245 (933)
T KOG2114|consen 243 DGR 245 (933)
T ss_pred CCc
Confidence 743
No 320
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.36 E-value=0.051 Score=61.40 Aligned_cols=224 Identities=13% Similarity=-0.016 Sum_probs=122.5
Q ss_pred eeeecCCCCeEEEEEecCcEE-EEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeE
Q 000685 125 SPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKL 203 (1352)
Q Consensus 125 slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~ 203 (1352)
++.|.+....++++....+.| +|+..++.... ... .....+.+. .++ ..++.+..++ +.++|+.+++.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~---~~~--~~~~G~~~~----~~~-g~l~v~~~~~-~~~~d~~~g~~ 72 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV---IDL--PGPNGMAFD----RPD-GRLYVADSGG-IAVVDPDTGKV 72 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE---EES--SSEEEEEEE----CTT-SEEEEEETTC-EEEEETTTTEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE---Eec--CCCceEEEE----ccC-CEEEEEEcCc-eEEEecCCCcE
Confidence 456777333477776655655 77887764322 111 226777773 145 4555555554 56669998865
Q ss_pred EEEEec---C-CCCCeeEEEEeeeCCCCCEEEEEeCC--------CcEEEEeCCCCCccceecccccccccccceEEEEe
Q 000685 204 VRRYTG---G-HKGSISCLMTFMASSGEALLVSGGSD--------GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVEL 271 (1352)
Q Consensus 204 i~~l~~---g-H~~~V~slawf~~s~dg~~LaSgS~D--------GtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slaf 271 (1352)
...... . .....+.++ +.++|++.++.+.. |.|..++.. ++... +...-...+.|+|
T Consensus 73 ~~~~~~~~~~~~~~~~ND~~---vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-------~~~~~~~pNGi~~ 141 (246)
T PF08450_consen 73 TVLADLPDGGVPFNRPNDVA---VDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-------VADGLGFPNGIAF 141 (246)
T ss_dssp EEEEEEETTCSCTEEEEEEE---E-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-------EEEEESSEEEEEE
T ss_pred EEEeeccCCCcccCCCceEE---EcCCCCEEEEecCCCccccccccceEEECCC-CeEEE-------EecCcccccceEE
Confidence 433321 1 334566775 78999988887654 456666666 43211 1223345789999
Q ss_pred eccCCCCCEE-EEEECCCcEEEEECCCCeE-EEEecCCCcccccCCceeEEEeCCCCCEEEEe-cCCeEEeccCCccccc
Q 000685 272 SRVMGGSPQL-ITIGADKTLAIWDTVSFKE-LRRIKPVPKLACHSVASWCHPRAPNLDILTCV-KDSHIWAIEHPTYSAL 348 (1352)
Q Consensus 272 sp~~~dg~~L-aSgs~DgtV~IWDl~tg~~-l~~~~~~~~l~~hs~~V~svafspdg~lLS~s-~Dg~IWDi~t~~~~~~ 348 (1352)
+| +++.| ++-+..+.|..|++..... +........+.......-.+++..+|.+.++. ..++|+-++..
T Consensus 142 s~---dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~----- 213 (246)
T PF08450_consen 142 SP---DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD----- 213 (246)
T ss_dssp ET---TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-----
T ss_pred CC---cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-----
Confidence 99 67655 5777888999999863221 11111111122222235578899999876554 44565544421
Q ss_pred ccCccccCCCCCCeEEecCCcccEEEEEEe-cCCCcEEEEE
Q 000685 349 TRPLCELSSLVPPQVLAHHKKLRVYCMVAH-SLQPHLVATG 388 (1352)
Q Consensus 349 ~~~l~~~~~~~~~~~l~~h~~~~V~~la~s-p~~~~lLatG 388 (1352)
...+..+..... .+++++|. ++...+++|.
T Consensus 214 ---------G~~~~~i~~p~~-~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 214 ---------GKLLREIELPVP-RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp ---------SCEEEEEE-SSS-SEEEEEEESTTSSEEEEEE
T ss_pred ---------ccEEEEEcCCCC-CEEEEEEECCCCCEEEEEe
Confidence 011223333323 68888885 4334444443
No 321
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.34 E-value=0.015 Score=64.85 Aligned_cols=189 Identities=15% Similarity=0.056 Sum_probs=104.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCCceEEEEEcCCeEEEEE
Q 000685 22 THPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQ 101 (1352)
Q Consensus 22 dg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~sVaF~Dg~IrlWD 101 (1352)
++.++++++.++.|..||..+|+.+.++..........+..++..++. ..++.++.+|
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~----------------------~~~~~l~~~d 92 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVG----------------------TSDGSLYALD 92 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEE----------------------ETTSEEEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccc----------------------cceeeeEecc
Confidence 567788888999999999999999999885321111111112222111 1466777888
Q ss_pred cCCccccccccccccccCCCCeeeeeecCCCCeEEEEEe-cCcEEEEEeeCCccccccccccCCCC----------e-EE
Q 000685 102 LWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICC-VNKAIFLDLVTMRGRDIPKQELDNKS----------L-VC 169 (1352)
Q Consensus 102 l~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs-~D~~I~wDl~t~~~~~i~~~~~h~~~----------V-~~ 169 (1352)
..+++.+.......... ............+. .++++. ...++.+|..+++..-. ....... + ..
T Consensus 93 ~~tG~~~W~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~g~l~~~d~~tG~~~w~--~~~~~~~~~~~~~~~~~~~~~ 168 (238)
T PF13360_consen 93 AKTGKVLWSIYLTSSPP-AGVRSSSSPAVDGD-RLYVGTSSGKLVALDPKTGKLLWK--YPVGEPRGSSPISSFSDINGS 168 (238)
T ss_dssp TTTSCEEEEEEE-SSCT-CSTB--SEEEEETT-EEEEEETCSEEEEEETTTTEEEEE--EESSTT-SS--EEEETTEEEE
T ss_pred cCCcceeeeeccccccc-cccccccCceEecC-EEEEEeccCcEEEEecCCCcEEEE--eecCCCCCCcceeeecccccc
Confidence 77776653210000000 01112222222355 555555 44455669888865321 1112111 1 12
Q ss_pred EEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCc
Q 000685 170 MEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQD 249 (1352)
Q Consensus 170 vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~ 249 (1352)
+.+ .++ .++.++.++.+..+|+.+++.+.... ...+..+ ....+..++.++.++.|..||+++|+.
T Consensus 169 ~~~------~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~---~~~~~~~----~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 169 PVI------SDG-RVYVSSGDGRVVAVDLATGEKLWSKP---ISGIYSL----PSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp EEC------CTT-EEEEECCTSSEEEEETTTTEEEEEEC---SS-ECEC----EECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred eEE------ECC-EEEEEcCCCeEEEEECCCCCEEEEec---CCCccCC----ceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 222 234 77777777754444999998664322 2223332 234667777777999999999999975
Q ss_pred c
Q 000685 250 S 250 (1352)
Q Consensus 250 ~ 250 (1352)
+
T Consensus 235 ~ 235 (238)
T PF13360_consen 235 V 235 (238)
T ss_dssp E
T ss_pred E
Confidence 4
No 322
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.0091 Score=74.48 Aligned_cols=187 Identities=17% Similarity=0.193 Sum_probs=124.6
Q ss_pred CCeeeeeecCCCCeEEEEEecCcEEEE-EeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECC
Q 000685 121 SGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI 199 (1352)
Q Consensus 121 ~~V~slafspdg~~lLasgs~D~~I~w-Dl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~ 199 (1352)
..++|++++. .+++-|..+|.+.. +.. +.. .+...|... ..+|.++++||.||+|.|..+-
T Consensus 40 D~is~~av~~---~~~~~GtH~g~v~~~~~~-~~~---~~~~~~s~~-----------~~~Gey~asCS~DGkv~I~sl~ 101 (846)
T KOG2066|consen 40 DAISCCAVHD---KFFALGTHRGAVYLTTCQ-GNP---KTNFDHSSS-----------ILEGEYVASCSDDGKVVIGSLF 101 (846)
T ss_pred hHHHHHHhhc---ceeeeccccceEEEEecC-Ccc---ccccccccc-----------ccCCceEEEecCCCcEEEeecc
Confidence 4466666664 38899999988865 332 221 111222221 2479999999999999999998
Q ss_pred CCeEEEEEecCCCCCeeEEEEeeeCCC-----CCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeecc
Q 000685 200 SWKLVRRYTGGHKGSISCLMTFMASSG-----EALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRV 274 (1352)
Q Consensus 200 t~~~i~~l~~gH~~~V~slawf~~s~d-----g~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~ 274 (1352)
+.+...++. ...++.+++ ++|+ .+.+++|+.-| +.++.-+- +... ....+..-.+.|.++.|.
T Consensus 102 ~~~~~~~~d--f~rpiksia---l~Pd~~~~~sk~fv~GG~ag-lvL~er~w---lgnk-~~v~l~~~eG~I~~i~W~-- 169 (846)
T KOG2066|consen 102 TDDEITQYD--FKRPIKSIA---LHPDFSRQQSKQFVSGGMAG-LVLSERNW---LGNK-DSVVLSEGEGPIHSIKWR-- 169 (846)
T ss_pred CCccceeEe--cCCcceeEE---eccchhhhhhhheeecCcce-EEEehhhh---hcCc-cceeeecCccceEEEEec--
Confidence 877766553 567888887 6766 57899999988 76665321 1111 111355667889999996
Q ss_pred CCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEEEEecCC-eEEecc
Q 000685 275 MGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDS-HIWAIE 341 (1352)
Q Consensus 275 ~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lLS~s~Dg-~IWDi~ 341 (1352)
|++|+-++++| |+|||+.+++.+..+.+..........-..+.|.++..++.|-.|. +|..++
T Consensus 170 ---g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 170 ---GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIK 233 (846)
T ss_pred ---CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEe
Confidence 57888887776 5999999988887765544222222233368888888777775554 455555
No 323
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.34 E-value=0.05 Score=70.88 Aligned_cols=115 Identities=17% Similarity=0.222 Sum_probs=72.9
Q ss_pred EEEEeeccccCCCCEEEEE-----ECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEE---eCCCcEE
Q 000685 169 CMEFLSRSAVGDVPLVAFG-----SSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSG---GSDGLLI 240 (1352)
Q Consensus 169 ~vaf~P~s~Spdg~~LasG-----s~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSg---S~DGtVr 240 (1352)
.|.| -.||+++++. .....|++||-+ +.+ ........+.-.+++| -|.|.++++- .+|+.|.
T Consensus 200 ~IsW-----RgDg~~fAVs~~~~~~~~RkirV~drE-g~L-ns~se~~~~l~~~LsW---kPsgs~iA~iq~~~sd~~Iv 269 (1265)
T KOG1920|consen 200 SISW-----RGDGEYFAVSFVESETGTRKIRVYDRE-GAL-NSTSEPVEGLQHSLSW---KPSGSLIAAIQCKTSDSDIV 269 (1265)
T ss_pred eEEE-----ccCCcEEEEEEEeccCCceeEEEeccc-chh-hcccCcccccccceee---cCCCCeEeeeeecCCCCcEE
Confidence 4777 6789999883 233789999976 433 2221133344456765 5688888874 3466899
Q ss_pred EEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEE---EECCCcEEEEECCCCe
Q 000685 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLIT---IGADKTLAIWDTVSFK 299 (1352)
Q Consensus 241 VWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaS---gs~DgtV~IWDl~tg~ 299 (1352)
++.-+ |-...++... +......|..++|+. ++..|+. ......|++|-+.+..
T Consensus 270 ffErN-GL~hg~f~l~--~p~de~~ve~L~Wns---~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 270 FFERN-GLRHGEFVLP--FPLDEKEVEELAWNS---NSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred EEecC-CccccccccC--CcccccchheeeecC---CCCceeeeecccccceEEEEEecCeE
Confidence 98865 3222222222 222334489999998 7888876 5555669999988754
No 324
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0021 Score=75.00 Aligned_cols=173 Identities=16% Similarity=0.085 Sum_probs=112.7
Q ss_pred CCCeeeeeecCCCCeEEEEEec-CcEEEE-EeeCCccccccccccCCCCeEEEEEeeccccCCC---CEEEEE-ECCCcE
Q 000685 120 TSGFASPPPSTKGRHFLVICCV-NKAIFL-DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDV---PLVAFG-SSDGVI 193 (1352)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~-D~~I~w-Dl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg---~~LasG-s~DGtI 193 (1352)
...|.+++.+-++. ++.+.++ |+.++. |+.+...........-.+. +.|.. + .| ..|+.+ -.+|.|
T Consensus 53 L~~I~sl~~S~dg~-L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~---a~wv~---s-kGd~~s~IAVs~~~sg~i 124 (558)
T KOG0882|consen 53 LGVILSLAVSYDGW-LFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF---AEWVT---S-KGDKISLIAVSLFKSGKI 124 (558)
T ss_pred HHHHHhhhccccce-eEeeccCcccceeEEEeeccchhhhcccccCCCc---eEEec---C-CCCeeeeEEeecccCCCc
Confidence 33455666667774 7777677 887755 7665433211111222222 33321 1 22 133333 378999
Q ss_pred EEEECCCCe-EEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCC------CCccceec---ccccccccc
Q 000685 194 RVLSMISWK-LVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH------GQDSRELV---PKLSLKAHD 263 (1352)
Q Consensus 194 rIWDl~t~~-~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~t------g~~~~~~~---~~~~l~gH~ 263 (1352)
.++|-.... ....+..-|..+|.++. +.+-+..++|....|.|.-|.... ......+. ..+.+.-..
T Consensus 125 ~VvD~~~d~~q~~~fkklH~sPV~~i~---y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~K 201 (558)
T KOG0882|consen 125 FVVDGFGDFCQDGYFKKLHFSPVKKIR---YNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAK 201 (558)
T ss_pred EEECCcCCcCccceecccccCceEEEE---eeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccc
Confidence 999987543 33444457999999996 788899999999999999998873 11111111 112223345
Q ss_pred cceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecC
Q 000685 264 GGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKP 306 (1352)
Q Consensus 264 ~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~ 306 (1352)
....++.|+| ++..+.+-+.|..|++++..+|+.++.+..
T Consensus 202 t~pts~Efsp---~g~qistl~~DrkVR~F~~KtGklvqeiDE 241 (558)
T KOG0882|consen 202 TEPTSFEFSP---DGAQISTLNPDRKVRGFVFKTGKLVQEIDE 241 (558)
T ss_pred cCccceEEcc---ccCcccccCcccEEEEEEeccchhhhhhhc
Confidence 5678999999 799999999999999999999998887644
No 325
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.12 E-value=0.069 Score=64.72 Aligned_cols=278 Identities=13% Similarity=0.154 Sum_probs=133.5
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE-EEeccCccceEEeccccceeEecccccCCCccccccCCceEEEE
Q 000685 13 KIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIY-ELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVN 91 (1352)
Q Consensus 13 ~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~-t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~sVa 91 (1352)
.|+++.|+++..-|+.|..+|.|.||.+...+.-. .-...+.+. ..+.+ ..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~------~~~~~--~~-------------------- 54 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDY------NFRRF--SL-------------------- 54 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------------S----G--------------------
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCc------ccccc--cc--------------------
Confidence 58999999998899999999999999987543221 000000000 00000 00
Q ss_pred EcCCeEEEEEcCCccc---ccccc-ccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccc------c
Q 000685 92 FYDDDVRFWQLWRNRA---AAAEA-PTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPK------Q 160 (1352)
Q Consensus 92 F~Dg~IrlWDl~t~~~---i~~~~-~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~------~ 160 (1352)
.++.-.+-|+...-. ..... ........+.|++++.|.-| |+++|..+|.+ ++|++......... .
T Consensus 55 -~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~ 131 (395)
T PF08596_consen 55 -NNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLS 131 (395)
T ss_dssp -GGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-
T ss_pred -cCCCcceEEehhhCCcccccccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccc
Confidence 001111111111000 00000 11112225679999998777 99999999977 45986554321111 1
Q ss_pred ccCCCCeEEEEEeeccccCCC---CEEEEEECCCcEEEEECC--C-CeEEEEEe---cCCCCCeeEEEEeeeCCCC----
Q 000685 161 ELDNKSLVCMEFLSRSAVGDV---PLVAFGSSDGVIRVLSMI--S-WKLVRRYT---GGHKGSISCLMTFMASSGE---- 227 (1352)
Q Consensus 161 ~~h~~~V~~vaf~P~s~Spdg---~~LasGs~DGtIrIWDl~--t-~~~i~~l~---~gH~~~V~slawf~~s~dg---- 227 (1352)
......|+++.|..-....|+ -.+++|++.|.+.+|.+. . +.....+. ..|.+.|..+.-+ ....|
T Consensus 132 ~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i-~~~~G~~a~ 210 (395)
T PF08596_consen 132 KSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPI-NADTGESAL 210 (395)
T ss_dssp SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEE-ETTT--B-B
T ss_pred cccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEE-ECCCCCccc
Confidence 223568999999653223333 568899999999999774 1 22221111 2567788777632 12211
Q ss_pred ---------------CEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccC--CCCCEEEEEECCCcE
Q 000685 228 ---------------ALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVM--GGSPQLITIGADKTL 290 (1352)
Q Consensus 228 ---------------~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~--~dg~~LaSgs~DgtV 290 (1352)
+.++....+..+|++...+.+..++. +. .......+.+-+.. ..+..|++-..||.|
T Consensus 211 At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~-----~~-~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i 284 (395)
T PF08596_consen 211 ATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKS-----FD-DPFLCSSASVVPTISRNGGYCLVCLFNNGSI 284 (395)
T ss_dssp -BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE------S-S-EEEEEEEEEEEE-EEEEEEEEEEETTSEE
T ss_pred CchhHhhccccCCCcCcEEEEEcccceEEEeCCCCccccee-----ec-cccccceEEEEeecccCCceEEEEEECCCcE
Confidence 23455566889999999887765431 11 11122333442100 146788899999999
Q ss_pred EEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEEE
Q 000685 291 AIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILT 330 (1352)
Q Consensus 291 ~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lLS 330 (1352)
++|.+-.-+.+......... +...+....++++|+++.
T Consensus 285 ~i~SLP~Lkei~~~~l~~~~--d~~~~~~ssis~~Gdi~~ 322 (395)
T PF08596_consen 285 RIYSLPSLKEIKSVSLPPPL--DSRRLSSSSISRNGDIFY 322 (395)
T ss_dssp EEEETTT--EEEEEE-SS-----HHHHTT-EE-TTS-EEE
T ss_pred EEEECCCchHhhcccCCCcc--ccccccccEECCCCCEEE
Confidence 99999998888775443211 222333556688888663
No 326
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.12 E-value=0.014 Score=72.03 Aligned_cols=113 Identities=19% Similarity=0.236 Sum_probs=84.3
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccc-eeccc
Q 000685 178 VGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSR-ELVPK 256 (1352)
Q Consensus 178 Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~-~~~~~ 256 (1352)
+..+.+++.|++-|.+.+|+-..+.....-. +-...+.++. ..+++..+++.|+..|.|.++-+..+..-. .+...
T Consensus 42 dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~-~~~~~~~~~~--~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~ 118 (726)
T KOG3621|consen 42 DATEEYLAMGSSAGSVYLYNRHTGEMRKLKN-EGATGITCVR--SVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTP 118 (726)
T ss_pred ecCCceEEEecccceEEEEecCchhhhcccc-cCccceEEEE--EecchhHhhhhhcCCceEEeehhhccCCCcceeecc
Confidence 4478999999999999999977665543322 3345555554 378899999999999999999887643211 01111
Q ss_pred ccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCC
Q 000685 257 LSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVS 297 (1352)
Q Consensus 257 ~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~t 297 (1352)
. -+.|...|++++|++ ++..+.+|..-|+|..-.+++
T Consensus 119 ~-d~~~~~rVTal~Ws~---~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 119 C-DKSHKCRVTALEWSK---NGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred c-cccCCceEEEEEecc---cccEEeecCCCceEEEEEech
Confidence 1 134788999999999 899999999999999988876
No 327
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.93 E-value=0.17 Score=62.13 Aligned_cols=90 Identities=18% Similarity=0.162 Sum_probs=68.8
Q ss_pred EEEECCCCe--EEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEe
Q 000685 194 RVLSMISWK--LVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVEL 271 (1352)
Q Consensus 194 rIWDl~t~~--~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slaf 271 (1352)
.+|+...++ ++....-.....|.|++ .+|+...|+.|+.||+|.+||...+... +..+.-.++.++|
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca---~sp~E~kLvlGC~DgSiiLyD~~~~~t~--------~~ka~~~P~~iaW 307 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCA---RSPSEDKLVLGCEDGSIILYDTTRGVTL--------LAKAEFIPTLIAW 307 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEe---cCcccceEEEEecCCeEEEEEcCCCeee--------eeeecccceEEEE
Confidence 456665442 33322235788899987 7999999999999999999999766322 1234455788999
Q ss_pred eccCCCCCEEEEEECCCcEEEEECCC
Q 000685 272 SRVMGGSPQLITIGADKTLAIWDTVS 297 (1352)
Q Consensus 272 sp~~~dg~~LaSgs~DgtV~IWDl~t 297 (1352)
|| ++.++++|+.-|.+.+||+.-
T Consensus 308 Hp---~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 308 HP---DGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred cC---CCcEEEEEcCCceEEEEEeec
Confidence 99 899999999999999999763
No 328
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.92 E-value=0.13 Score=57.11 Aligned_cols=225 Identities=14% Similarity=0.090 Sum_probs=114.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceE-EeccccceeEecccccCCCccccccCCceEEEEEcCCeEEEEE
Q 000685 23 HPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRR-LVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQ 101 (1352)
Q Consensus 23 g~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~-~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~sVaF~Dg~IrlWD 101 (1352)
|.+++.|.++|.+.+-+..+|..++.+.....-.+. .+++++..+..++ .|++....|
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgs---------------------hd~~~yalD 121 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGS---------------------HDGNFYALD 121 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEec---------------------CCCcEEEec
Confidence 556788888888888888888887777654333332 2336666666655 677888888
Q ss_pred cCCccccccccccccccCCCCeeeeeecC-CCCeEEEEEecCcEEEEEeeCCccccccccccCCCCeEEE-EEeeccccC
Q 000685 102 LWRNRAAAAEAPTAVSNVTSGFASPPPST-KGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCM-EFLSRSAVG 179 (1352)
Q Consensus 102 l~t~~~i~~~~~~~~~~~~~~V~slafsp-dg~~lLasgs~D~~I~wDl~t~~~~~i~~~~~h~~~V~~v-af~P~s~Sp 179 (1352)
..+..|+.. ...+ .....+-+..+ ++. +.++...+.++....++.....+ ....-..+|..- .+
T Consensus 122 ~~~~~cVyk---skcg--G~~f~sP~i~~g~~s-ly~a~t~G~vlavt~~~~~~~~~-w~~~~~~PiF~splc------- 187 (354)
T KOG4649|consen 122 PKTYGCVYK---SKCG--GGTFVSPVIAPGDGS-LYAAITAGAVLAVTKNPYSSTEF-WAATRFGPIFASPLC------- 187 (354)
T ss_pred ccccceEEe---cccC--CceeccceecCCCce-EEEEeccceEEEEccCCCCccee-hhhhcCCccccCcee-------
Confidence 877777642 1111 22233444555 443 55555555555665544422111 001112222211 01
Q ss_pred CCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCC--------cEEEEeCCCCCccc
Q 000685 180 DVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDG--------LLILWSADHGQDSR 251 (1352)
Q Consensus 180 dg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DG--------tVrVWDl~tg~~~~ 251 (1352)
-++.+..++-||.+.-+| ..|+.+.++ ...++|..-- ....|..+.+..+..+- .-.+|...+|...+
T Consensus 188 v~~sv~i~~VdG~l~~f~-~sG~qvwr~--~t~GpIf~~P-c~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~ 263 (354)
T KOG4649|consen 188 VGSSVIITTVDGVLTSFD-ESGRQVWRP--ATKGPIFMEP-CESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLH 263 (354)
T ss_pred ccceEEEEEeccEEEEEc-CCCcEEEee--cCCCceeccc-ccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEE
Confidence 145666677788877777 566666654 2444443211 01113323333333332 23356666553322
Q ss_pred ee-cccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEEC
Q 000685 252 EL-VPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDT 295 (1352)
Q Consensus 252 ~~-~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl 295 (1352)
.+ .++..+.-|+-.+. ..++|..++.||++.|...
T Consensus 264 vy~~p~l~F~~h~~~~S---------~~~ll~~~s~dgkv~il~~ 299 (354)
T KOG4649|consen 264 VYLSPKLRFDLHSPGIS---------YPKLLRRSSGDGKVMILMT 299 (354)
T ss_pred EEeCcccceeccCCCCc---------chhhhhhhcCCCcEEEEEe
Confidence 21 12222333322211 1356777888999988843
No 329
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.019 Score=66.69 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=42.3
Q ss_pred EEecCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEEeccC
Q 000685 5 KAFRPTNDKIVKIQLHPTHP-WLVTADASDHVSVWNWEHRQVIYELKAGG 53 (1352)
Q Consensus 5 ~~L~gHs~~V~~lafSPdg~-~LaTgs~DG~VrVWDl~tg~~i~t~~~~~ 53 (1352)
+.+.+|...|..++|||... +|..++.+..|+|.|+++..++..+..+.
T Consensus 187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~ 236 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYN 236 (463)
T ss_pred hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccC
Confidence 35677888999999999888 78899999999999999988888877553
No 330
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.88 E-value=0.08 Score=58.57 Aligned_cols=111 Identities=11% Similarity=0.090 Sum_probs=80.1
Q ss_pred cCCCCeEEEEEecCcEE-EEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 000685 129 STKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRY 207 (1352)
Q Consensus 129 spdg~~lLasgs~D~~I-~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l 207 (1352)
.++.+.+++.|+..+.+ -+|.++++..- ...-..+|.|-+.. -|++++.|+..|.+.+.+.++|.....+
T Consensus 19 ~~dskT~v~igSHs~~~~avd~~sG~~~W---e~ilg~RiE~sa~v------vgdfVV~GCy~g~lYfl~~~tGs~~w~f 89 (354)
T KOG4649|consen 19 CNDSKTLVVIGSHSGIVIAVDPQSGNLIW---EAILGVRIECSAIV------VGDFVVLGCYSGGLYFLCVKTGSQIWNF 89 (354)
T ss_pred ecCCceEEEEecCCceEEEecCCCCcEEe---ehhhCceeeeeeEE------ECCEEEEEEccCcEEEEEecchhheeee
Confidence 35566688889888887 45998886432 22234555554442 2788999999999999999999777766
Q ss_pred ecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccce
Q 000685 208 TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRE 252 (1352)
Q Consensus 208 ~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~ 252 (1352)
..-..-.+... ..+++.++..|+.|++.+..|.++..++.+
T Consensus 90 ~~~~~vk~~a~----~d~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 90 VILETVKVRAQ----CDFDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred eehhhhccceE----EcCCCceEEEecCCCcEEEecccccceEEe
Confidence 42222233333 477899999999999999999998777654
No 331
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.037 Score=64.38 Aligned_cols=94 Identities=11% Similarity=-0.001 Sum_probs=73.8
Q ss_pred EEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCC-EEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEe
Q 000685 193 IRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEA-LLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVEL 271 (1352)
Q Consensus 193 IrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~-~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slaf 271 (1352)
+++.+..+.+... +..+|...|..++ ++|..+ ++..++.+.+|+|.|+++..++.. +..| ..+++++|
T Consensus 175 v~~l~~~~fkssq-~lp~~g~~Irdla---fSp~~~GLl~~asl~nkiki~dlet~~~vss------y~a~-~~~wSC~w 243 (463)
T KOG1645|consen 175 VQKLESHDFKSSQ-ILPGEGSFIRDLA---FSPFNEGLLGLASLGNKIKIMDLETSCVVSS------YIAY-NQIWSCCW 243 (463)
T ss_pred eEEeccCCcchhh-cccccchhhhhhc---cCccccceeeeeccCceEEEEecccceeeeh------eecc-CCceeeee
Confidence 5666655555555 3348888999997 777766 788999999999999998876554 3555 77999999
Q ss_pred eccCCCCCEEEEEECCCcEEEEECCCCe
Q 000685 272 SRVMGGSPQLITIGADKTLAIWDTVSFK 299 (1352)
Q Consensus 272 sp~~~dg~~LaSgs~DgtV~IWDl~tg~ 299 (1352)
.- ++.++|..|-..|.|.|||++.-+
T Consensus 244 Dl--de~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 244 DL--DERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred cc--CCcceeEEeccCceEEEEEccCCC
Confidence 98 467788888899999999998543
No 332
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.77 E-value=0.0052 Score=74.94 Aligned_cols=214 Identities=17% Similarity=0.132 Sum_probs=144.7
Q ss_pred HHHhcCCHHHHHHHHhhc-----ChhhHHHHHHHHHhCCcchhhcccccccCccEEEee----cccccHHHHHHHHhhcc
Q 000685 910 CLAAYGDSVSAVKWASRL-----GREHHDDLAQFMLGMGYATEALHLPGISKRLEFDLA----MQSNDLKRALQCLITMS 980 (1352)
Q Consensus 910 ~~~~~~d~~~a~~~~~~i-----~~~~~~~~a~fl~~~G~~e~Al~~~~ds~~~kf~la----~~~g~l~~a~~~~~~~~ 980 (1352)
.++-.++|.+|+.|+.+| ...++-.+|...-.+|-.|.|-++.+.. -+|.=| -+.|+.+.|..++..
T Consensus 741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~--~~~~dai~my~k~~kw~da~kla~e-- 816 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA--DLFKDAIDMYGKAGKWEDAFKLAEE-- 816 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc--chhHHHHHHHhccccHHHHHHHHHH--
Confidence 344558899999999874 2345777888889999999998887662 233333 356888888888722
Q ss_pred cccccCCCCCCCCccccccccccchhhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcccccccccch
Q 000685 981 NSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELR 1060 (1352)
Q Consensus 981 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 1060 (1352)
-.-+ |+. + .-+..-++.-..+|.+..||.-|--. +.+.+|.+.+|-.
T Consensus 817 ----~~~~----------------e~t------~----~~yiakaedldehgkf~eaeqlyiti---~~p~~aiqmydk~ 863 (1636)
T KOG3616|consen 817 ----CHGP----------------EAT------I----SLYIAKAEDLDEHGKFAEAEQLYITI---GEPDKAIQMYDKH 863 (1636)
T ss_pred ----hcCc----------------hhH------H----HHHHHhHHhHHhhcchhhhhheeEEc---cCchHHHHHHHhh
Confidence 2111 000 0 23444466677788888888887766 7676676655544
Q ss_pred hhH-----HHHhccCCh--hHHHHHHHHHHHcCCcHHHHH-HHHHcCCHHHHHHHHHHcCCcHHHHHHHHHcCCCch-HH
Q 000685 1061 GLA-----LRLANHGEL--TRLSGLVTNLISLGLGREAAF-SAAILGDNALMEKAWQDTGMLAEAVLHAHAHGRPSL-KN 1131 (1352)
Q Consensus 1061 ~l~-----ll~~~~g~~--~~l~~l~~~a~~~~~~~~~af-~~~~lgd~~~~~~~l~~~~~~~~A~~~A~t~~~~~~-~~ 1131 (1352)
+|- |+--.+|+. +.-+.+++..+.+|+. ..|. +.+..||...++.|+..+++|.+||+.|||-|-..+ +.
T Consensus 864 ~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~l-kaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~ 942 (1636)
T KOG3616|consen 864 GLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDL-KAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKH 942 (1636)
T ss_pred CcchHHHHHHHHhChhhhhHHHHHHHHHHHhccCh-hHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHH
Confidence 441 333456654 4445677888999999 5554 455899999999999999999999999999998777 56
Q ss_pred HHHHHHHHHhhh---cCCCCcchhhHHHHHHhc
Q 000685 1132 LVEAWNKMLQKE---VDHTPTAKTDAAAAFLAS 1161 (1352)
Q Consensus 1132 ~~~~w~~~l~~~---~~~~~~~~~~~~~~~~~~ 1161 (1352)
+.=+|-+.+.-. .---+-.++.+|.+|-++
T Consensus 943 v~flwaksiggdaavkllnk~gll~~~id~a~d 975 (1636)
T KOG3616|consen 943 VAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAAD 975 (1636)
T ss_pred HHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhc
Confidence 668898876321 111233455566665543
No 333
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.75 E-value=0.27 Score=61.80 Aligned_cols=99 Identities=11% Similarity=0.092 Sum_probs=63.3
Q ss_pred CcEEEEECCC-----CeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEE-eCCCcEEEEeCCCCCccc--eecccccccc-
Q 000685 191 GVIRVLSMIS-----WKLVRRYTGGHKGSISCLMTFMASSGEALLVSG-GSDGLLILWSADHGQDSR--ELVPKLSLKA- 261 (1352)
Q Consensus 191 GtIrIWDl~t-----~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSg-S~DGtVrVWDl~tg~~~~--~~~~~~~l~g- 261 (1352)
+.|.+.|..+ .+.+..+. -......+. ++|||++++.+ ..+.+|.|.|+.+.+... .+.+...+.+
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIP--VGKsPHGV~---vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvae 370 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVP--VPKNPHGVN---TSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAE 370 (635)
T ss_pred CEEEEEECCccccCCcceEEEEE--CCCCccceE---ECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEe
Confidence 4577777776 34444443 334455565 79999987655 459999999998754311 0011111111
Q ss_pred --cccceEEEEeeccCCCCCEEEEEECCCcEEEEECCC
Q 000685 262 --HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVS 297 (1352)
Q Consensus 262 --H~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~t 297 (1352)
-..+....+|.+ ++....|--.|..|..||+..
T Consensus 371 vevGlGPLHTaFDg---~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 371 PELGLGPLHTAFDG---RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred eccCCCcceEEECC---CCCEEEeEeecceeEEEehHH
Confidence 123455678877 678888999999999999875
No 334
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.71 E-value=0.15 Score=63.43 Aligned_cols=137 Identities=13% Similarity=0.091 Sum_probs=87.6
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCCceEE
Q 000685 10 TNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQ 89 (1352)
Q Consensus 10 Hs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~s 89 (1352)
|...|+--+++.++.+++.|+..|.|.+++-..|+... ++...
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~-~~~~~------------------------------------ 74 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK-LKNEG------------------------------------ 74 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhc-ccccC------------------------------------
Confidence 45667777788889999999999999999965543322 11110
Q ss_pred EEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEE-EeeCCcc-ccc---cccccCC
Q 000685 90 VNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRG-RDI---PKQELDN 164 (1352)
Q Consensus 90 VaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~w-Dl~t~~~-~~i---~~~~~h~ 164 (1352)
....+..+..+++.. +++.|+..+.|.| -++.... ..+ ..-..|.
T Consensus 75 -----------------------------~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~ 124 (726)
T KOG3621|consen 75 -----------------------------ATGITCVRSVSSVEY-LVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHK 124 (726)
T ss_pred -----------------------------ccceEEEEEecchhH-hhhhhcCCceEEeehhhccCCCcceeeccccccCC
Confidence 012233444566664 8888888888866 3322211 111 1113368
Q ss_pred CCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCC----eEEEEEecCCCCCeeEEE
Q 000685 165 KSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW----KLVRRYTGGHKGSISCLM 219 (1352)
Q Consensus 165 ~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~----~~i~~l~~gH~~~V~sla 219 (1352)
..|+|++| ++++..+++|.+.|+|.+-.+.+. -..+.+. .-.+.|..+.
T Consensus 125 ~rVTal~W-----s~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il-~~ds~IVQlD 177 (726)
T KOG3621|consen 125 CRVTALEW-----SKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEIL-SEDSEIVQLD 177 (726)
T ss_pred ceEEEEEe-----cccccEEeecCCCceEEEEEechhhhhccccceee-ccCcceEEee
Confidence 89999999 889999999999999999888762 1112222 3445666665
No 335
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.60 E-value=0.0017 Score=78.64 Aligned_cols=199 Identities=12% Similarity=0.131 Sum_probs=121.6
Q ss_pred CCCeeeeeecCCCC-eEEEEEecCcEEEE-EeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEE----CCCcE
Q 000685 120 TSGFASPPPSTKGR-HFLVICCVNKAIFL-DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGS----SDGVI 193 (1352)
Q Consensus 120 ~~~V~slafspdg~-~lLasgs~D~~I~w-Dl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs----~DGtI 193 (1352)
...+.|+++.-+.+ .++++|..+|.|.+ .........-.....+..+.+|++|.+ -|.++|+.|- .|..+
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwne----LDtn~LAagldkhrnds~~ 131 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNE----LDTNHLAAGLDKHRNDSSL 131 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccccccccccccccc----ccHHHHHhhhhhhcccCCc
Confidence 34566777554433 58889998898855 332221111112345677889999953 3567777774 36689
Q ss_pred EEEECCCC--eE--EEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEE
Q 000685 194 RVLSMISW--KL--VRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAV 269 (1352)
Q Consensus 194 rIWDl~t~--~~--i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~sl 269 (1352)
.|||+.++ .+ -..+..+......+++|. .+.+++.+|...+.++++|++....... .-....|..+
T Consensus 132 ~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwl---rd~klvlaGm~sr~~~ifdlRqs~~~~~-------svnTk~vqG~ 201 (783)
T KOG1008|consen 132 KIWDINSLLTVPKESPLFSSSTLDGQNSVCWL---RDTKLVLAGMTSRSVHIFDLRQSLDSVS-------SVNTKYVQGI 201 (783)
T ss_pred cceecccccCCCccccccccccccCccccccc---cCcchhhcccccchhhhhhhhhhhhhhh-------hhhhhhcccc
Confidence 99999875 11 122221244556688763 7888999999999999999984322111 1112234556
Q ss_pred EeeccCCCCCEEEEEECCCcEEEEE-CCCCe-EEEEecCCCcccccCC----ceeEEEeCCC--CCEEEEecCC-e--EE
Q 000685 270 ELSRVMGGSPQLITIGADKTLAIWD-TVSFK-ELRRIKPVPKLACHSV----ASWCHPRAPN--LDILTCVKDS-H--IW 338 (1352)
Q Consensus 270 afsp~~~dg~~LaSgs~DgtV~IWD-l~tg~-~l~~~~~~~~l~~hs~----~V~svafspd--g~lLS~s~Dg-~--IW 338 (1352)
...|. .+.|+++-. |+.|-+|| ...-+ .++. +....+ .+..++|.|. |.+++++.|. + ++
T Consensus 202 tVdp~--~~nY~cs~~-dg~iAiwD~~rnienpl~~------i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrly 272 (783)
T KOG1008|consen 202 TVDPF--SPNYFCSNS-DGDIAIWDTYRNIENPLQI------ILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLY 272 (783)
T ss_pred eecCC--CCCceeccc-cCceeeccchhhhccHHHH------HhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEe
Confidence 66664 456777666 99999999 43322 2222 111111 3778999986 4455777776 3 56
Q ss_pred ecc
Q 000685 339 AIE 341 (1352)
Q Consensus 339 Di~ 341 (1352)
|+.
T Consensus 273 di~ 275 (783)
T KOG1008|consen 273 DIC 275 (783)
T ss_pred ccc
Confidence 765
No 336
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.01 Score=69.47 Aligned_cols=224 Identities=13% Similarity=0.016 Sum_probs=140.6
Q ss_pred ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCC--C-eEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeC-C
Q 000685 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS--W-KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS-D 236 (1352)
Q Consensus 161 ~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t--~-~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~-D 236 (1352)
-.|.+.|+.+.- .-.+++.+++.||.++.|.-.. + +.++.+. .|-..|.+++ .+.++.++.|.+. |
T Consensus 6 ymhrd~i~hv~~------tka~fiiqASlDGh~KFWkKs~isGvEfVKhFr-aHL~~I~sl~---~S~dg~L~~Sv~d~D 75 (558)
T KOG0882|consen 6 YMHRDVITHVFP------TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFR-AHLGVILSLA---VSYDGWLFRSVEDPD 75 (558)
T ss_pred hcccceeeeEee------ehhheEEeeecchhhhhcCCCCccceeehhhhH-HHHHHHHhhh---ccccceeEeeccCcc
Confidence 357777777654 2467999999999999998653 2 3444444 7888888886 7889999999888 9
Q ss_pred CcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCC--CEEEEEECCCcEEEEECCCCeEEEEecCCCcccccC
Q 000685 237 GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGS--PQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHS 314 (1352)
Q Consensus 237 GtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg--~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs 314 (1352)
..++++|+.+-.....+. +.--.+ .+.|....++. .+-++.-.++.+.|+|-....|... ..-.-|.
T Consensus 76 hs~KvfDvEn~DminmiK----L~~lPg---~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~----~fkklH~ 144 (558)
T KOG0882|consen 76 HSVKVFDVENFDMINMIK----LVDLPG---FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDG----YFKKLHF 144 (558)
T ss_pred cceeEEEeeccchhhhcc----cccCCC---ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccc----eeccccc
Confidence 999999998754332110 111111 22332210122 2223344689999999765442111 1135689
Q ss_pred CceeEEEeCCCCCEE-EEecCCe--EEeccCCccc-ccccCccccCCCCCCeEEecCCcccEEEEEEecCCCcEEEEEEC
Q 000685 315 VASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYS-ALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTN 390 (1352)
Q Consensus 315 ~~V~svafspdg~lL-S~s~Dg~--IWDi~t~~~~-~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~lLatGs~ 390 (1352)
.+|.++.+++-++.+ +.-..|- -|.... .+. +..+..+..+....+..+...+. ...++.|+| ++..+.+-..
T Consensus 145 sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~-~~qfPr~~l~~~~K~eTdLy~f~K~Kt-~pts~Efsp-~g~qistl~~ 221 (558)
T KOG0882|consen 145 SPVKKIRYNQAGDSAVSIDISGMVEYWSAEG-PFQFPRTNLNFELKHETDLYGFPKAKT-EPTSFEFSP-DGAQISTLNP 221 (558)
T ss_pred CceEEEEeeccccceeeccccceeEeecCCC-cccCccccccccccccchhhccccccc-CccceEEcc-ccCcccccCc
Confidence 999999999988855 4444554 487663 121 11222333333333333333333 678999999 5777888888
Q ss_pred CCeEEEEecCCCCCCcccc
Q 000685 391 VGVIISEFDPRSLPAVAPL 409 (1352)
Q Consensus 391 DG~IlriWd~~~~p~i~~l 409 (1352)
|..| |+++.++...+..+
T Consensus 222 DrkV-R~F~~KtGklvqei 239 (558)
T KOG0882|consen 222 DRKV-RGFVFKTGKLVQEI 239 (558)
T ss_pred ccEE-EEEEeccchhhhhh
Confidence 8887 89988876555444
No 337
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.55 E-value=0.0044 Score=46.10 Aligned_cols=36 Identities=17% Similarity=0.539 Sum_probs=33.8
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWN 39 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWD 39 (1352)
+..+..|...|.++.|++++.++++++.|+.+++||
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 677889999999999999999999999999999996
No 338
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.45 E-value=0.11 Score=65.11 Aligned_cols=190 Identities=12% Similarity=0.026 Sum_probs=113.2
Q ss_pred EEcCCCCEEEE-EeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEeccccc-CCCccccccCCceEEEEEcCC
Q 000685 18 QLHPTHPWLVT-ADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEH-KGKPTEAMRGGSVKQVNFYDD 95 (1352)
Q Consensus 18 afSPdg~~LaT-gs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~-~g~~l~~l~~g~V~sVaF~Dg 95 (1352)
=++|||+.+.. .-..+.+.+.|.++.+...++..+.......++++++++.+.+.+. .+..+..+..+. ..
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e-------~d 271 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE-------RD 271 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeecccc-------Cc
Confidence 35667775543 3345788889999988888887766554555567888776654321 111111111100 11
Q ss_pred eEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEEEeeCC--ccccccccccCCCCeEEEEEe
Q 000685 96 DVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTM--RGRDIPKQELDNKSLVCMEFL 173 (1352)
Q Consensus 96 ~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl~t~--~~~~i~~~~~h~~~V~~vaf~ 173 (1352)
.+.++++.... ++.++|+..+ . ..+.+.++|..+. ....+.....-......+.+
T Consensus 272 ~~vvfni~~ie--------------------a~vkdGK~~~-V-~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~v- 328 (635)
T PRK02888 272 WVVVFNIARIE--------------------EAVKAGKFKT-I-GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNT- 328 (635)
T ss_pred eEEEEchHHHH--------------------HhhhCCCEEE-E-CCCEEEEEECCccccCCcceEEEEECCCCccceEE-
Confidence 23333332211 2345777333 3 3344557787761 00122223344667788999
Q ss_pred eccccCCCCEEEEEE-CCCcEEEEECCCCe------------EEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEE
Q 000685 174 SRSAVGDVPLVAFGS-SDGVIRVLSMISWK------------LVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240 (1352)
Q Consensus 174 P~s~Spdg~~LasGs-~DGtIrIWDl~t~~------------~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVr 240 (1352)
+|||+++++++ .+.+|.|.|+.+.+ .+.... --.++.. .+ |+.+|+...|-..|..|.
T Consensus 329 ----SPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve-vGlGPLH-Ta---FDg~G~aytslf~dsqv~ 399 (635)
T PRK02888 329 ----SPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE-LGLGPLH-TA---FDGRGNAYTTLFLDSQIV 399 (635)
T ss_pred ----CCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec-cCCCcce-EE---ECCCCCEEEeEeecceeE
Confidence 88999877665 68999999998754 233433 2233333 22 688889999999999999
Q ss_pred EEeCCC
Q 000685 241 LWSADH 246 (1352)
Q Consensus 241 VWDl~t 246 (1352)
.||+..
T Consensus 400 kwn~~~ 405 (635)
T PRK02888 400 KWNIEA 405 (635)
T ss_pred EEehHH
Confidence 999975
No 339
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.41 E-value=0.034 Score=70.23 Aligned_cols=160 Identities=11% Similarity=0.073 Sum_probs=110.2
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCCceEEEEE
Q 000685 13 KIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNF 92 (1352)
Q Consensus 13 ~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~sVaF 92 (1352)
.|+-|. .+++.+.+|+..|+|.+-|..+.+.++++. .|.+.+.-++-.|..|++++.... -..+.
T Consensus 179 ~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~-aHs~siSDfDv~GNlLitCG~S~R-----------~~~l~- 243 (1118)
T KOG1275|consen 179 GVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFD-AHSGSISDFDVQGNLLITCGYSMR-----------RYNLA- 243 (1118)
T ss_pred ceEEEE--ecCcEEEeecccceEEeecCCcCceeeeee-ccccceeeeeccCCeEEEeecccc-----------ccccc-
Confidence 344444 357899999999999999999999999998 456777777788888888864321 11111
Q ss_pred cCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEE-EeeCCccc--cccccccCCCCeEE
Q 000685 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGR--DIPKQELDNKSLVC 169 (1352)
Q Consensus 93 ~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~w-Dl~t~~~~--~i~~~~~h~~~V~~ 169 (1352)
.|..|+|||++..+.+.. .....+ -.-+.|+|.-...+++++..|...+ |..+.... .+.........+..
T Consensus 244 ~D~FvkVYDLRmmral~P-I~~~~~-----P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~ 317 (1118)
T KOG1275|consen 244 MDPFVKVYDLRMMRALSP-IQFPYG-----PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISA 317 (1118)
T ss_pred ccchhhhhhhhhhhccCC-cccccC-----chhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCccee
Confidence 588999999998876531 111111 1335678876667777777777744 63322111 12222333556888
Q ss_pred EEEeeccccCCCCEEEEEECCCcEEEEEC
Q 000685 170 MEFLSRSAVGDVPLVAFGSSDGVIRVLSM 198 (1352)
Q Consensus 170 vaf~P~s~Spdg~~LasGs~DGtIrIWDl 198 (1352)
+++ |++++.++.|..+|.|.+|--
T Consensus 318 fDi-----Ssn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 318 FDI-----SSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred EEe-----cCCCceEEEecccCcEeeecC
Confidence 888 789999999999999999973
No 340
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.40 E-value=0.58 Score=56.07 Aligned_cols=268 Identities=12% Similarity=0.068 Sum_probs=127.4
Q ss_pred cCCCCEEEEE---------eCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCCceEEE
Q 000685 20 HPTHPWLVTA---------DASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQV 90 (1352)
Q Consensus 20 SPdg~~LaTg---------s~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~sV 90 (1352)
|||+++++.. +..+.+.|||+.+++................+|+|+.++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v-------------------- 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFV-------------------- 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEE--------------------
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEE--------------------
Confidence 6888877763 23467889999987665443322223334455888877765
Q ss_pred EEcCCeEEEEEcCCcccccccccc----ccc--------cCCCCeeeeeecCCCCeEEEEEecCcEE-------------
Q 000685 91 NFYDDDVRFWQLWRNRAAAAEAPT----AVS--------NVTSGFASPPPSTKGRHFLVICCVNKAI------------- 145 (1352)
Q Consensus 91 aF~Dg~IrlWDl~t~~~i~~~~~~----~~~--------~~~~~V~slafspdg~~lLasgs~D~~I------------- 145 (1352)
.++.|.+++..++......... ..+ ..-..-.++.||||++.++..-.++..+
T Consensus 61 --~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~ 138 (353)
T PF00930_consen 61 --RDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS 138 (353)
T ss_dssp --ETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE
T ss_pred --ecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc
Confidence 3556666665544332110000 000 0012235677999998554444333322
Q ss_pred -----------------------EEEeeCCcccccccc---ccCCCCeEEEEEeeccccCCCCEEEE--EECCC---cEE
Q 000685 146 -----------------------FLDLVTMRGRDIPKQ---ELDNKSLVCMEFLSRSAVGDVPLVAF--GSSDG---VIR 194 (1352)
Q Consensus 146 -----------------------~wDl~t~~~~~i~~~---~~h~~~V~~vaf~P~s~Spdg~~Las--Gs~DG---tIr 194 (1352)
++|+.+++...+... ......+..+.| .+++..|+. .+.+. .+.
T Consensus 139 ~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W-----~~d~~~l~~~~~nR~q~~~~l~ 213 (353)
T PF00930_consen 139 QYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGW-----SPDGKRLWVQWLNRDQNRLDLV 213 (353)
T ss_dssp SS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEE-----EETTEEEEEEEEETTSTEEEEE
T ss_pred cCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCccccee-----cCCCcEEEEEEcccCCCEEEEE
Confidence 112222221111111 122445667777 456663333 33333 366
Q ss_pred EEECCCCeEEEEEecCCCCCee---EEEEeee-CCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEE-E
Q 000685 195 VLSMISWKLVRRYTGGHKGSIS---CLMTFMA-SSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVA-V 269 (1352)
Q Consensus 195 IWDl~t~~~i~~l~~gH~~~V~---slawf~~-s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~s-l 269 (1352)
++|..++.+...+.....+.|. ... + + ..++.+|.....||.-+||-+........ .+....-.|.. +
T Consensus 214 ~~d~~tg~~~~~~~e~~~~Wv~~~~~~~-~-~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-----~lT~G~~~V~~i~ 286 (353)
T PF00930_consen 214 LCDASTGETRVVLEETSDGWVDVYDPPH-F-LGPDGNEFLWISERDGYRHLYLYDLDGGKPR-----QLTSGDWEVTSIL 286 (353)
T ss_dssp EEEECTTTCEEEEEEESSSSSSSSSEEE-E--TTTSSEEEEEEETTSSEEEEEEETTSSEEE-----ESS-SSS-EEEEE
T ss_pred EEECCCCceeEEEEecCCcceeeecccc-c-ccCCCCEEEEEEEcCCCcEEEEEccccccee-----ccccCceeecccc
Confidence 6787766443333323333332 332 1 3 34455566666788766665543221111 13334445644 5
Q ss_pred EeeccCCCCCEEEEEECC----CcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEE
Q 000685 270 ELSRVMGGSPQLITIGAD----KTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL 329 (1352)
Q Consensus 270 afsp~~~dg~~LaSgs~D----gtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lL 329 (1352)
.|++ .++.+..++..+ ..|..-++..+..++.+. .....-..+.|||+++++
T Consensus 287 ~~d~--~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT------~~~~~~~~~~~Spdg~y~ 342 (353)
T PF00930_consen 287 GWDE--DNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLT------CEDGDHYSASFSPDGKYY 342 (353)
T ss_dssp EEEC--TSSEEEEEESSGGTTSBEEEEEETTETTEEEESS------TTSSTTEEEEE-TTSSEE
T ss_pred eEcC--CCCEEEEEecCCCCCceEEEEEEeCCCCCeEecc------CCCCCceEEEECCCCCEE
Confidence 6676 234455566653 345555666233344432 222222689999999965
No 341
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.37 E-value=0.36 Score=54.81 Aligned_cols=205 Identities=10% Similarity=0.009 Sum_probs=110.7
Q ss_pred CCCeeeeeecCCCCeEEEEEecCcEEEE-EeeCCccccccccccC-CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEE
Q 000685 120 TSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELD-NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLS 197 (1352)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~D~~I~w-Dl~t~~~~~i~~~~~h-~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWD 197 (1352)
...+++++|+|+...++++....+.++. +.. ++. +...... .+..-.|++ ..++.++++--.++.+.+++
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~v--lr~i~l~g~~D~EgI~y-----~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKV--LRRIPLDGFGDYEGITY-----LGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---E--EEEEE-SS-SSEEEEEE------STTEEEEEETTTTEEEEEE
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCE--EEEEeCCCCCCceeEEE-----ECCCEEEEEEcCCCcEEEEE
Confidence 3458999999987768788777777744 653 433 2222222 356778888 44566666555689999998
Q ss_pred CCCC------eEEEEEe----cCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCC---CCccceec--cccccccc
Q 000685 198 MISW------KLVRRYT----GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH---GQDSRELV--PKLSLKAH 262 (1352)
Q Consensus 198 l~t~------~~i~~l~----~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~t---g~~~~~~~--~~~~l~gH 262 (1352)
+... .....+. ..++..+-.++ +++.++.|+.+-...-.++|.+.. ...+.... .......+
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla---~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLA---YDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEE---EETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred EeccccccchhhceEEecccccCCCcceEEEE---EcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence 8321 1122221 13556788998 467666666677776677777654 21111100 00001123
Q ss_pred ccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCC---ceeEEEeCCCCCEEEEecCCeEE
Q 000685 263 DGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSV---ASWCHPRAPNLDILTCVKDSHIW 338 (1352)
Q Consensus 263 ~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~---~V~svafspdg~lLS~s~Dg~IW 338 (1352)
-..+.+++++| ..+.+++....++.|.++| .+|+.+..+.......+-.. .--.|+|.++|.+...|+-+.+|
T Consensus 170 ~~d~S~l~~~p--~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy 245 (248)
T PF06977_consen 170 VRDLSGLSYDP--RTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFY 245 (248)
T ss_dssp SS---EEEEET--TTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEE
T ss_pred eccccceEEcC--CCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEE
Confidence 34478999999 4678888888899999999 66887666543332222111 22378999999877777665544
No 342
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.35 E-value=0.55 Score=58.92 Aligned_cols=105 Identities=16% Similarity=0.129 Sum_probs=65.8
Q ss_pred EEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEE------------------eCCCcEEEEeC
Q 000685 183 LVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSG------------------GSDGLLILWSA 244 (1352)
Q Consensus 183 ~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSg------------------S~DGtVrVWDl 244 (1352)
.++.++.+|.+...|.++++.+-....... .+. .++ ..+..+ ..+|.|.-.|+
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~~----~~~---~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~ 373 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEVEQ----PMA---YDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDP 373 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEeecc----ccc---cCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeC
Confidence 678888999999999999988766531110 111 122 222221 24677888888
Q ss_pred CCCCccceecccccccccc------cce--EEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEec
Q 000685 245 DHGQDSRELVPKLSLKAHD------GGV--VAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIK 305 (1352)
Q Consensus 245 ~tg~~~~~~~~~~~l~gH~------~~V--~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~ 305 (1352)
.+|+.+.+.. +..+. ... ..+.. .+.+++.++.||.|+.+|..+|+.+.+++
T Consensus 374 ~tG~~~W~~~----~~~~~~~~~~g~~~~~~~~~~-----~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 374 KTGKVVWEKR----EGTIRDSWNIGFPHWGGSLAT-----AGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred CCCcEeeEee----CCccccccccCCcccCcceEe-----cCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 8887665421 11110 011 11222 35688888999999999999999888753
No 343
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.28 E-value=2.4 Score=53.17 Aligned_cols=112 Identities=16% Similarity=0.167 Sum_probs=64.4
Q ss_pred CCCcEEEEECCCCeEEEEEecCCCCC--------e--eE-----EEEe--eeCCCCCEEEEEeCCC--------------
Q 000685 189 SDGVIRVLSMISWKLVRRYTGGHKGS--------I--SC-----LMTF--MASSGEALLVSGGSDG-------------- 237 (1352)
Q Consensus 189 ~DGtIrIWDl~t~~~i~~l~~gH~~~--------V--~s-----lawf--~~s~dg~~LaSgS~DG-------------- 237 (1352)
.+|.+..+|..+++.+-++...+... . .+ ..|. .+.+.+.+++.++.|+
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~ 252 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN 252 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence 36789999999998877664221110 0 00 0010 1233456777777665
Q ss_pred ----cEEEEeCCCCCccceeccccccccccc----ceEEEEeeccC-CCC---CEEEEEECCCcEEEEECCCCeEEEEe
Q 000685 238 ----LLILWSADHGQDSRELVPKLSLKAHDG----GVVAVELSRVM-GGS---PQLITIGADKTLAIWDTVSFKELRRI 304 (1352)
Q Consensus 238 ----tVrVWDl~tg~~~~~~~~~~~l~gH~~----~V~slafsp~~-~dg---~~LaSgs~DgtV~IWDl~tg~~l~~~ 304 (1352)
.|.-+|..+|+....+. ...|.. ......+.... -++ ..++.++.+|.+...|..+|+.+...
T Consensus 253 ~~~~~l~Ald~~tG~~~W~~~----~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 253 LYTDSIVALDADTGKVKWFYQ----TTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISAR 327 (488)
T ss_pred CceeeEEEEcCCCCCEEEEee----CCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEe
Confidence 79999999998765421 111211 10111111100 022 26778889999999999999987764
No 344
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.25 E-value=0.88 Score=53.40 Aligned_cols=246 Identities=15% Similarity=0.174 Sum_probs=124.5
Q ss_pred EEEEcCCCCEEEEEe----------CCCcEEEEECCCCcEEEEEeccCc--------cceEEeccccceeEecccccCCC
Q 000685 16 KIQLHPTHPWLVTAD----------ASDHVSVWNWEHRQVIYELKAGGV--------DQRRLVGAKLEKLAEGELEHKGK 77 (1352)
Q Consensus 16 ~lafSPdg~~LaTgs----------~DG~VrVWDl~tg~~i~t~~~~~~--------~~i~~vs~dg~~Lasgs~d~~g~ 77 (1352)
.+.+||+++.+.+++ ..-.|.+||..|-....++..... .....++.+++++......
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~T---- 115 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFT---- 115 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEES----
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccC----
Confidence 467899999887653 245799999999988887764321 1122333455544432211
Q ss_pred ccccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEEEee-CCcccc
Q 000685 78 PTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLV-TMRGRD 156 (1352)
Q Consensus 78 ~l~~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl~-t~~~~~ 156 (1352)
+ -..|.|.|+..++.+. . ..- .+ +..+--+.+. .+...|+++....+.+. .++...
T Consensus 116 --------P-------a~SVtVVDl~~~kvv~----e-i~~-PG-C~~iyP~~~~-~F~~lC~DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 116 --------P-------ATSVTVVDLAAKKVVG----E-IDT-PG-CWLIYPSGNR-GFSMLCGDGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp --------S-------SEEEEEEETTTTEEEE----E-EEG-TS-EEEEEEEETT-EEEEEETTSCEEEEEETSTSSEEE
T ss_pred --------C-------CCeEEEEECCCCceee----e-ecC-CC-EEEEEecCCC-ceEEEecCCceEEEEECCCCCEeE
Confidence 1 2345556666554431 0 000 11 1112112222 36666666666666554 333221
Q ss_pred ccc--cccCCCCeE-EEEEeeccccCCCCEEEEEECCCcEEEEECCCCeE--EEEEecC-------C--CCCeeEEEEee
Q 000685 157 IPK--QELDNKSLV-CMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKL--VRRYTGG-------H--KGSISCLMTFM 222 (1352)
Q Consensus 157 i~~--~~~h~~~V~-~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~--i~~l~~g-------H--~~~V~slawf~ 222 (1352)
... +....+++. .-++ +..+..++.-+.+|.|+--|+..... ...+... + .+.-.-++
T Consensus 173 ~~t~~F~~~~dp~f~~~~~-----~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A--- 244 (342)
T PF06433_consen 173 KSTKVFDPDDDPLFEHPAY-----SRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIA--- 244 (342)
T ss_dssp EEEEESSTTTS-B-S--EE-----ETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EE---
T ss_pred eeccccCCCCcccccccce-----ECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeee---
Confidence 111 111222222 2223 23455666678899998888875432 2222100 0 11112222
Q ss_pred eCCC-CCEEEEEe--C-----CC--cEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEE-CCCcEE
Q 000685 223 ASSG-EALLVSGG--S-----DG--LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIG-ADKTLA 291 (1352)
Q Consensus 223 ~s~d-g~~LaSgS--~-----DG--tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs-~DgtV~ 291 (1352)
+++. +++++.-. . |+ .|-++|+.+++.+.++ .+ ...+.+|..+. ++..+|++.+ .++.+.
T Consensus 245 ~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri----~l---~~~~~Si~Vsq--d~~P~L~~~~~~~~~l~ 315 (342)
T PF06433_consen 245 YHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARI----PL---EHPIDSIAVSQ--DDKPLLYALSAGDGTLD 315 (342)
T ss_dssp EETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEE----EE---EEEESEEEEES--SSS-EEEEEETTTTEEE
T ss_pred eccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEE----eC---CCccceEEEcc--CCCcEEEEEcCCCCeEE
Confidence 3333 33333221 1 11 3777788888877653 12 23477899988 4677887665 589999
Q ss_pred EEECCCCeEEEEec
Q 000685 292 IWDTVSFKELRRIK 305 (1352)
Q Consensus 292 IWDl~tg~~l~~~~ 305 (1352)
+||..+|+.+++++
T Consensus 316 v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 316 VYDAATGKLVRSIE 329 (342)
T ss_dssp EEETTT--EEEEE-
T ss_pred EEeCcCCcEEeehh
Confidence 99999999998864
No 345
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.11 E-value=2.3 Score=48.69 Aligned_cols=231 Identities=15% Similarity=0.189 Sum_probs=120.9
Q ss_pred CCCEEEEEeCCCcEEEEECC-CCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCCceEEEEEcCCeEEEE
Q 000685 22 THPWLVTADASDHVSVWNWE-HRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFW 100 (1352)
Q Consensus 22 dg~~LaTgs~DG~VrVWDl~-tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~sVaF~Dg~IrlW 100 (1352)
.+++|+.|..+| |.++++. ........+......+.++ ++.+.|+.- .|+.+.++
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl-~~~~~llvL----------------------sd~~l~~~ 61 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVL-PELNLLLVL----------------------SDGQLYVY 61 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEe-cccCEEEEE----------------------cCCccEEE
Confidence 578999998888 8899883 3333333332221111111 333333332 47888888
Q ss_pred EcCCccccccccc----------cccccCCCCeeeee--ecCCCCeEEEEEecCcEEEEEeeCC--cc-ccccccccCCC
Q 000685 101 QLWRNRAAAAEAP----------TAVSNVTSGFASPP--PSTKGRHFLVICCVNKAIFLDLVTM--RG-RDIPKQELDNK 165 (1352)
Q Consensus 101 Dl~t~~~i~~~~~----------~~~~~~~~~V~sla--fspdg~~lLasgs~D~~I~wDl~t~--~~-~~i~~~~~h~~ 165 (1352)
++..-........ ..... ...+...+ -...+...|+++....+.++.+... .. ..... ..-.+
T Consensus 62 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke-~~lp~ 139 (275)
T PF00780_consen 62 DLDSLEPVSTSAPLAFPKSRSLPTKLPE-TKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKE-ISLPD 139 (275)
T ss_pred Echhhccccccccccccccccccccccc-cCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEE-EEcCC
Confidence 8766544321100 01111 12233333 1234444777777776666655442 21 12211 22357
Q ss_pred CeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCC-----------CCCeeEEEEeeeCCCCCEEEEEe
Q 000685 166 SLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGH-----------KGSISCLMTFMASSGEALLVSGG 234 (1352)
Q Consensus 166 ~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH-----------~~~V~slawf~~s~dg~~LaSgS 234 (1352)
.+.++.|. ++.|+.|..++ ..+.|+.++.....+.... ..++..+. -+++.+|++
T Consensus 140 ~~~~i~~~-------~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~e~Ll~-- 205 (275)
T PF00780_consen 140 PPSSIAFL-------GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQ----LSDNEFLLC-- 205 (275)
T ss_pred CcEEEEEe-------CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEE----eCCceEEEE--
Confidence 89999993 67788887665 7788998765543332111 11222222 233455553
Q ss_pred CCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEe
Q 000685 235 SDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRI 304 (1352)
Q Consensus 235 ~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~ 304 (1352)
.|..-.+-|.. |+..+. ....+. ..+.++.+.. ++|+..+. +.|.||++.+++.++++
T Consensus 206 ~~~~g~fv~~~-G~~~r~--~~i~W~---~~p~~~~~~~-----pyli~~~~-~~iEV~~~~~~~lvQ~i 263 (275)
T PF00780_consen 206 YDNIGVFVNKN-GEPSRK--STIQWS---SAPQSVAYSS-----PYLIAFSS-NSIEVRSLETGELVQTI 263 (275)
T ss_pred ecceEEEEcCC-CCcCcc--cEEEcC---CchhEEEEEC-----CEEEEECC-CEEEEEECcCCcEEEEE
Confidence 23333344443 443321 122222 2456677653 58877766 45999999999998885
No 346
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=95.95 E-value=0.081 Score=64.81 Aligned_cols=75 Identities=13% Similarity=0.131 Sum_probs=60.4
Q ss_pred cCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEE
Q 000685 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1352)
Q Consensus 162 ~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrV 241 (1352)
.....|.|.++ +|+...++.|+.||+|.+||...+... +. .+.-..+.++ ++|+|.+|++|+.-|.+.+
T Consensus 257 pL~s~v~~ca~-----sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~-ka~~~P~~ia---WHp~gai~~V~s~qGelQ~ 325 (545)
T PF11768_consen 257 PLPSQVICCAR-----SPSEDKLVLGCEDGSIILYDTTRGVTL--LA-KAEFIPTLIA---WHPDGAIFVVGSEQGELQC 325 (545)
T ss_pred ecCCcceEEec-----CcccceEEEEecCCeEEEEEcCCCeee--ee-eecccceEEE---EcCCCcEEEEEcCCceEEE
Confidence 45678999999 789999999999999999998765332 22 2344566776 5899999999999999999
Q ss_pred EeCCCC
Q 000685 242 WSADHG 247 (1352)
Q Consensus 242 WDl~tg 247 (1352)
||+.-+
T Consensus 326 FD~ALs 331 (545)
T PF11768_consen 326 FDMALS 331 (545)
T ss_pred EEeecC
Confidence 998744
No 347
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.78 E-value=0.17 Score=68.49 Aligned_cols=227 Identities=13% Similarity=0.056 Sum_probs=113.8
Q ss_pred HHhcCCHHHHHHHHhhc-------ChhhHHHHHHHHHhCCcchhhcccccccCccEEE-----------eecccccHHHH
Q 000685 911 LAAYGDSVSAVKWASRL-------GREHHDDLAQFMLGMGYATEALHLPGISKRLEFD-----------LAMQSNDLKRA 972 (1352)
Q Consensus 911 ~~~~~d~~~a~~~~~~i-------~~~~~~~~a~fl~~~G~~e~Al~~~~ds~~~kf~-----------la~~~g~l~~a 972 (1352)
....|+++.|.+++..+ +...++.++..+-+.|..++|+++...-....++ ...+.|+++.|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 34568888887776652 1234677777777888888887776542222111 34567788888
Q ss_pred HHHHhhcccccccCCCCCCCCccccccccccchhhhhhh----------hhhhhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000685 973 LQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAV----------QGIVKFAKEFLDLIDAADATGQANIAREALK 1042 (1352)
Q Consensus 973 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~w~~l~~~al~~g~~~~A~~~~~ 1042 (1352)
+++...|....-..+. .-.+.|+..=.+..+..++. .|+..+..-|..|.+.+.+.|+++.|++.|+
T Consensus 527 l~lf~~M~~~Gv~PD~---vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDR---VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHcCCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8777555332110000 00111111111111111111 2233333466677777777777777777777
Q ss_pred HHHhcCCcccccccccchhhHHHHhccCChhHHHHHHHHHHHcCCcHH-HHHH----HH-HcCCHHHHHHHHHHcCC---
Q 000685 1043 RLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGRE-AAFS----AA-ILGDNALMEKAWQDTGM--- 1113 (1352)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~-~af~----~~-~lgd~~~~~~~l~~~~~--- 1113 (1352)
.....+-. -...-|..|.-.|+..|+.+...++.+.+...|-.-+ ..|. ++ ..|+++++.+++.+..+
T Consensus 604 ~M~e~gi~---p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 604 MIHEYNIK---GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHcCCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 76543310 0011244555566777777777777666666652211 2232 22 56667766666654321
Q ss_pred cHHHH---HHHHHcCC-CchHHHHHHHHHHHhhh
Q 000685 1114 LAEAV---LHAHAHGR-PSLKNLVEAWNKMLQKE 1143 (1352)
Q Consensus 1114 ~~~A~---~~A~t~~~-~~~~~~~~~w~~~l~~~ 1143 (1352)
-+... .+...|+. .++.+..+.|+++....
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g 714 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK 714 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 11110 11222222 33566667777765543
No 348
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.69 E-value=0.096 Score=68.63 Aligned_cols=168 Identities=15% Similarity=0.057 Sum_probs=83.1
Q ss_pred HHhcCCHHHHHHHHhhcChh---hHHHHHHHHHhCCcchhhcccccccC--ccE---------EEeecccccHHHHHHHH
Q 000685 911 LAAYGDSVSAVKWASRLGRE---HHDDLAQFMLGMGYATEALHLPGISK--RLE---------FDLAMQSNDLKRALQCL 976 (1352)
Q Consensus 911 ~~~~~d~~~a~~~~~~i~~~---~~~~~a~fl~~~G~~e~Al~~~~ds~--~~k---------f~la~~~g~l~~a~~~~ 976 (1352)
....|++++|.+++..+++. -++.++.-+.+.|..++|+.+...-. ..+ ...+.++|+++.|.++.
T Consensus 269 y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~ 348 (697)
T PLN03081 269 YSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAH 348 (697)
T ss_pred HHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHH
Confidence 34468888888888775443 26777888888888888888764310 011 12234567777777776
Q ss_pred hhcccccccCCCCCCCCccccccccccchhhhhhhhhhh----hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccc
Q 000685 977 ITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIV----KFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKG 1052 (1352)
Q Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~~~ 1052 (1352)
.+|....-..+. .-.+.|+.+=.|..++.+|..=+. .+..-|..|.......|+.+.|.+.|++....|-.
T Consensus 349 ~~m~~~g~~~d~---~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~-- 423 (697)
T PLN03081 349 AGLIRTGFPLDI---VANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA-- 423 (697)
T ss_pred HHHHHhCCCCCe---eehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--
Confidence 554333110000 000111111112222222222111 11234666666666666666666666665432210
Q ss_pred ccccccchhhHHHHhccCChhHHHHHHHHHHH
Q 000685 1053 ALQGHELRGLALRLANHGELTRLSGLVTNLIS 1084 (1352)
Q Consensus 1053 ~~~~~~~~~l~ll~~~~g~~~~l~~l~~~a~~ 1084 (1352)
--..-|..|+--++..|..++..++.+.+.+
T Consensus 424 -Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 424 -PNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred -CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 0001133333445556666666665555544
No 349
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.69 E-value=1.9 Score=49.14 Aligned_cols=200 Identities=11% Similarity=0.133 Sum_probs=98.1
Q ss_pred eEEecCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec--cccceeEecccccCCCccc
Q 000685 4 LKAFRPTNDKIVKIQLHPTHP-WLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTE 80 (1352)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~-~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~ 80 (1352)
-+.+.+-.+.+..++|+|+.. ++++....+.|...+. +|+.++++...+......+. .+++++++..
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~E--------- 83 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEE--------- 83 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEET---------
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEc---------
Confidence 346667777799999999866 5555666788877785 58999998765544433333 4445554432
Q ss_pred cccCCceEEEEEcCCeEEEEEcCCcccc-c-c---cccc-ccccCCCCeeeeeecCCCCeEEEEEecCcEEEEEeeC---
Q 000685 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAA-A-A---EAPT-AVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVT--- 151 (1352)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrlWDl~t~~~i-~-~---~~~~-~~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl~t--- 151 (1352)
.++.+.+.++...... . . .... .....+..+-.++|++.++.++++--.+-..++.+..
T Consensus 84 ------------r~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~ 151 (248)
T PF06977_consen 84 ------------RDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPG 151 (248)
T ss_dssp ------------TTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-
T ss_pred ------------CCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccC
Confidence 2455555555222110 0 0 0010 1112245688999999888677765554433443322
Q ss_pred -Cccc-----cccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEe--cCCC------CCeeE
Q 000685 152 -MRGR-----DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYT--GGHK------GSISC 217 (1352)
Q Consensus 152 -~~~~-----~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~--~gH~------~~V~s 217 (1352)
.... ...........+..+.|+|. .+.+++....+..|..+| .+|+.+..+. .+.. ..--.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~----t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEG 226 (248)
T PF06977_consen 152 GFDLFVSDDQDLDDDKLFVRDLSGLSYDPR----TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEG 226 (248)
T ss_dssp SS--EEEE-HHHH-HT--SS---EEEEETT----TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEE
T ss_pred ccceeeccccccccccceeccccceEEcCC----CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccE
Confidence 1110 01111223456788999753 567778887888999999 5576655442 2211 13455
Q ss_pred EEEeeeCCCCCEEEEE
Q 000685 218 LMTFMASSGEALLVSG 233 (1352)
Q Consensus 218 lawf~~s~dg~~LaSg 233 (1352)
|+ +.++|++.+++
T Consensus 227 Ia---~d~~G~LYIvs 239 (248)
T PF06977_consen 227 IA---FDPDGNLYIVS 239 (248)
T ss_dssp EE---E-TT--EEEEE
T ss_pred EE---ECCCCCEEEEc
Confidence 55 67777666553
No 350
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.68 E-value=11 Score=49.33 Aligned_cols=228 Identities=12% Similarity=0.057 Sum_probs=106.5
Q ss_pred cCCeEEEEEcCCccccccccccccccCCCCeeeee--ecCCCCeEEEEEecCcEEEEEeeCCccccccccccCCCCeEEE
Q 000685 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPP--PSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCM 170 (1352)
Q Consensus 93 ~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~sla--fspdg~~lLasgs~D~~I~wDl~t~~~~~i~~~~~h~~~V~~v 170 (1352)
.||++|+....-+-... ....... -..++.+. ++++-+.+++.+--+.+..+.+... ...... ..-......+
T Consensus 380 kdgSLRiiRngi~I~e~--A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~~eTrvl~i~~e-~ee~~~-~gf~~~~~Ti 454 (1096)
T KOG1897|consen 380 KDGSLRIIRNGIGIDEL--ASIDLPG-IKGMWSLKSMVDENYDNYLVLSFISETRVLNISEE-VEETED-PGFSTDEQTI 454 (1096)
T ss_pred CCCcEEEEeccccccee--eEeecCC-ccceeEeeccccccCCcEEEEEeccceEEEEEccc-eEEecc-ccccccCceE
Confidence 77888887644321110 0111111 23456666 5555555777777777666644321 211111 1111122222
Q ss_pred EEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCcc
Q 000685 171 EFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDS 250 (1352)
Q Consensus 171 af~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~ 250 (1352)
..+ .-.++.|+-.+.+ .||+++-. + .+..+. -.+.+++.. .+.+...++.++.++.+...++..+...
T Consensus 455 f~S----~i~g~~lvQvTs~-~iRl~ss~-~-~~~~W~--~p~~~ti~~---~~~n~sqVvvA~~~~~l~y~~i~~~~l~ 522 (1096)
T KOG1897|consen 455 FCS----TINGNQLVQVTSN-SIRLVSSA-G-LRSEWR--PPGKITIGV---VSANASQVVVAGGGLALFYLEIEDGGLR 522 (1096)
T ss_pred EEE----ccCCceEEEEecc-cEEEEcch-h-hhhccc--CCCceEEEE---EeecceEEEEecCccEEEEEEeecccee
Confidence 221 1234444444333 47777754 1 122222 122233322 2334446677777777777777655421
Q ss_pred ceecccccccccccceEEEEeeccCCCCC---EEEEEECCCcEEEEEC-CCCeEEEEecCCCcccccCCceeEEEeCCCC
Q 000685 251 RELVPKLSLKAHDGGVVAVELSRVMGGSP---QLITIGADKTLAIWDT-VSFKELRRIKPVPKLACHSVASWCHPRAPNL 326 (1352)
Q Consensus 251 ~~~~~~~~l~gH~~~V~slafsp~~~dg~---~LaSgs~DgtV~IWDl-~tg~~l~~~~~~~~l~~hs~~V~svafspdg 326 (1352)
.. . -...+..|.|+.++|..++.+ +++.|.++..+.+--. .+...+..... ....-...|.-..|-.|.
T Consensus 523 e~--~---~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l--~~~~iPRSIl~~~~e~d~ 595 (1096)
T KOG1897|consen 523 EV--S---HKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQL--SGEIIPRSILLTTFEGDI 595 (1096)
T ss_pred ee--e---eheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeecc--CCCccchheeeEEeeccc
Confidence 11 0 122345699999998644444 7888887766554432 23322221100 011111223333444434
Q ss_pred C-EEEEecCCe----EEeccCCc
Q 000685 327 D-ILTCVKDSH----IWAIEHPT 344 (1352)
Q Consensus 327 ~-lLS~s~Dg~----IWDi~t~~ 344 (1352)
. ++++..||. +.|..++.
T Consensus 596 ~yLlvalgdG~l~~fv~d~~tg~ 618 (1096)
T KOG1897|consen 596 HYLLVALGDGALLYFVLDINTGQ 618 (1096)
T ss_pred eEEEEEcCCceEEEEEEEcccce
Confidence 4 557788885 46666653
No 351
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=95.66 E-value=0.18 Score=60.63 Aligned_cols=206 Identities=14% Similarity=0.053 Sum_probs=127.0
Q ss_pred HHHhcCCHHHHHHHHhhcC------hhhHHHHHHHHHhCCcchhhccccccc----Ccc-E-----E--Ee---eccccc
Q 000685 910 CLAAYGDSVSAVKWASRLG------REHHDDLAQFMLGMGYATEALHLPGIS----KRL-E-----F--DL---AMQSND 968 (1352)
Q Consensus 910 ~~~~~~d~~~a~~~~~~i~------~~~~~~~a~fl~~~G~~e~Al~~~~ds----~~~-k-----f--~l---a~~~g~ 968 (1352)
.....|+++.|.+++.+.- ..-+..++..+..+|-.++|+++.... +.. . + .| .++.|+
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 4455689999988777631 123666778888888888887664321 110 0 1 11 235678
Q ss_pred HHHHHHHHhhcccccccCCCCCCCCccccccccccchhhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 000685 969 LKRALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAG 1048 (1352)
Q Consensus 969 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~A~~~~~~~~~~~ 1048 (1352)
++.|.+....+... + + ....-|..||+.....|+++.|.+.|+++-...
T Consensus 196 ~~~A~~~~~~al~~---~-p---------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 244 (389)
T PRK11788 196 LDAARALLKKALAA---D-P---------------------------QCVRASILLGDLALAQGDYAAAIEALERVEEQD 244 (389)
T ss_pred HHHHHHHHHHHHhH---C-c---------------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 88887776322111 0 0 012577889999999999999999999984321
Q ss_pred CcccccccccchhhHHHHhccCChhHHHHHHHHHHHcCCcHHHHHH---HH-HcCCHHHHHHHHHHc-CCcHHHH----H
Q 000685 1049 SVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFS---AA-ILGDNALMEKAWQDT-GMLAEAV----L 1119 (1352)
Q Consensus 1049 ~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~~af~---~~-~lgd~~~~~~~l~~~-~~~~~A~----~ 1119 (1352)
+. ....-+..|..+|...|+.+......+.+.........+.. .+ ..|+.++++++|.+. ...|... +
T Consensus 245 -p~--~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l 321 (389)
T PRK11788 245 -PE--YLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRL 321 (389)
T ss_pred -hh--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 10 00001345667888999999998888887765433123222 12 679999999988753 2223221 1
Q ss_pred HHH---HcCCCchHHHHHHHHHHHhhhcCCCCc
Q 000685 1120 HAH---AHGRPSLKNLVEAWNKMLQKEVDHTPT 1149 (1352)
Q Consensus 1120 ~A~---t~~~~~~~~~~~~w~~~l~~~~~~~~~ 1149 (1352)
++. .++..+..+.++.+++++.+.+...|.
T Consensus 322 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 322 LDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 222 122346677888888888888777665
No 352
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.45 E-value=0.11 Score=70.44 Aligned_cols=70 Identities=19% Similarity=0.054 Sum_probs=46.7
Q ss_pred HHhcCCHHHHHHHHhhcC-------hhhHHHHHHHHHhCCcchhhcccccccCccE------------EEeecccccHHH
Q 000685 911 LAAYGDSVSAVKWASRLG-------REHHDDLAQFMLGMGYATEALHLPGISKRLE------------FDLAMQSNDLKR 971 (1352)
Q Consensus 911 ~~~~~d~~~a~~~~~~i~-------~~~~~~~a~fl~~~G~~e~Al~~~~ds~~~k------------f~la~~~g~l~~ 971 (1352)
....|++++|.+++..+. ...++.++..+-+.|..++|+.+..+ -..+ .+.+.+.|+++.
T Consensus 589 y~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~e-M~~~Gv~PD~~TynsLI~a~~k~G~~ee 667 (1060)
T PLN03218 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDD-MKKKGVKPDEVFFSALVDVAGHAGDLDK 667 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHhCCCHHH
Confidence 345688888888776622 13467788888888888888887654 1111 234556788888
Q ss_pred HHHHHhhccc
Q 000685 972 ALQCLITMSN 981 (1352)
Q Consensus 972 a~~~~~~~~~ 981 (1352)
|+++...|..
T Consensus 668 A~~l~~eM~k 677 (1060)
T PLN03218 668 AFEILQDARK 677 (1060)
T ss_pred HHHHHHHHHH
Confidence 8888755543
No 353
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.05 E-value=0.3 Score=63.44 Aligned_cols=98 Identities=15% Similarity=0.172 Sum_probs=67.7
Q ss_pred EEEEEecCcEEEEEeeCCcccccccccc----CCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecC
Q 000685 135 FLVICCVNKAIFLDLVTMRGRDIPKQEL----DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGG 210 (1352)
Q Consensus 135 lLasgs~D~~I~wDl~t~~~~~i~~~~~----h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~g 210 (1352)
.++.-+.+++.+||++-...+.+ .... ......|++- +.+ .+||+|+.+|.||+|| +.++.-++...+
T Consensus 545 tflGls~n~lfriDpR~~~~k~v-~~~~k~Y~~~~~Fs~~aT-----t~~-G~iavgs~~G~IRLyd-~~g~~AKT~lp~ 616 (794)
T PF08553_consen 545 TFLGLSDNSLFRIDPRLSGNKLV-DSQSKQYSSKNNFSCFAT-----TED-GYIAVGSNKGDIRLYD-RLGKRAKTALPG 616 (794)
T ss_pred eEEEECCCceEEeccCCCCCcee-eccccccccCCCceEEEe-----cCC-ceEEEEeCCCcEEeec-ccchhhhhcCCC
Confidence 66777777888998875322222 1111 2345667665 344 4799999999999999 444445555557
Q ss_pred CCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeC
Q 000685 211 HKGSISCLMTFMASSGEALLVSGGSDGLLILWSA 244 (1352)
Q Consensus 211 H~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl 244 (1352)
-..+|.+|+ .+.||++|+..+ +..+.+++.
T Consensus 617 lG~pI~~iD---vt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 617 LGDPIIGID---VTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CCCCeeEEE---ecCCCcEEEEee-cceEEEEEE
Confidence 789999998 899999988755 556777775
No 354
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.04 E-value=4.8 Score=47.47 Aligned_cols=186 Identities=11% Similarity=0.051 Sum_probs=105.7
Q ss_pred CcEEEEECCCCcEEEEEeccCccceEEec----c-----ccceeEecccccCCCccccccCCceEEEEEcCCeEEEEEcC
Q 000685 33 DHVSVWNWEHRQVIYELKAGGVDQRRLVG----A-----KLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLW 103 (1352)
Q Consensus 33 G~VrVWDl~tg~~i~t~~~~~~~~i~~vs----~-----dg~~Lasgs~d~~g~~l~~l~~g~V~sVaF~Dg~IrlWDl~ 103 (1352)
..|+|.|-.+.+.+.++.......+.++. . ...+++.|..-..+.-. .. ..|.+.++++.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~-----~~------~~Gri~v~~i~ 70 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDP-----EP------SSGRILVFEIS 70 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSS-----S-------S-EEEEEEEEC
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccc-----cc------cCcEEEEEEEE
Confidence 35788888888888777655444444433 2 14566665421100000 00 12778888887
Q ss_pred Cc----cccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEEEeeCCc-cccccccccCCCCeEEEEEeecccc
Q 000685 104 RN----RAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMR-GRDIPKQELDNKSLVCMEFLSRSAV 178 (1352)
Q Consensus 104 t~----~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl~t~~-~~~i~~~~~h~~~V~~vaf~P~s~S 178 (1352)
.. ..+. ........+.|++++-- ++ .++++....+.++++...+ ........ ....+.++..
T Consensus 71 ~~~~~~~~l~---~i~~~~~~g~V~ai~~~-~~--~lv~~~g~~l~v~~l~~~~~l~~~~~~~-~~~~i~sl~~------ 137 (321)
T PF03178_consen 71 ESPENNFKLK---LIHSTEVKGPVTAICSF-NG--RLVVAVGNKLYVYDLDNSKTLLKKAFYD-SPFYITSLSV------ 137 (321)
T ss_dssp SS-----EEE---EEEEEEESS-EEEEEEE-TT--EEEEEETTEEEEEEEETTSSEEEEEEE--BSSSEEEEEE------
T ss_pred cccccceEEE---EEEEEeecCcceEhhhh-CC--EEEEeecCEEEEEEccCcccchhhheec-ceEEEEEEec------
Confidence 74 1111 11122236678888755 33 4677777777777887766 33322222 2337777777
Q ss_pred CCCCEEEEEECCCcEEEEECCC-CeEEEEE-ecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCC
Q 000685 179 GDVPLVAFGSSDGVIRVLSMIS-WKLVRRY-TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH 246 (1352)
Q Consensus 179 pdg~~LasGs~DGtIrIWDl~t-~~~i~~l-~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~t 246 (1352)
.+++|+.|.....+.++.++. ...+..+ .......++++. +-.+++.++.+..+|.|.++....
T Consensus 138 -~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~---~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 138 -FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAE---FLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp -ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEE---EE-SSSEEEEEETTSEEEEEEE-S
T ss_pred -cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEE---EecCCcEEEEEcCCCeEEEEEECC
Confidence 377999999888888875543 3322222 223455677775 332335999999999999998863
No 355
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.01 E-value=8.5 Score=48.85 Aligned_cols=28 Identities=7% Similarity=0.080 Sum_probs=23.9
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEEec
Q 000685 24 PWLVTADASDHVSVWNWEHRQVIYELKA 51 (1352)
Q Consensus 24 ~~LaTgs~DG~VrVWDl~tg~~i~t~~~ 51 (1352)
..++.++.|+.|.-.|..+|+.+.++..
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 4677788899999999999999988764
No 356
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=94.97 E-value=0.89 Score=44.87 Aligned_cols=107 Identities=20% Similarity=0.274 Sum_probs=70.4
Q ss_pred eEEEEEeeccccCCC-CEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCC
Q 000685 167 LVCMEFLSRSAVGDV-PLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSAD 245 (1352)
Q Consensus 167 V~~vaf~P~s~Spdg-~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~ 245 (1352)
|++|++... ..+| +.|++||.|..||+|+-. ..+..+. -.+.|.+++ .-.+..|+.+..+|+|-+|+-.
T Consensus 2 V~al~~~d~--d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~--e~~~v~~L~----~~~~~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 2 VTALCLFDF--DGDGENELLVGSDDFEIRVFKGD--EIVAEIT--ETDKVTSLC----SLGGGRFAYALANGTVGVYDRS 71 (111)
T ss_pred eeEEEEEec--CCCCcceEEEecCCcEEEEEeCC--cEEEEEe--cccceEEEE----EcCCCEEEEEecCCEEEEEeCc
Confidence 556666431 2333 679999999999999754 5666664 456788886 2244789999999999999864
Q ss_pred CCCccceecccccccccccceEEEEeeccCC-CCCEEEEEECCCcEEE
Q 000685 246 HGQDSRELVPKLSLKAHDGGVVAVELSRVMG-GSPQLITIGADKTLAI 292 (1352)
Q Consensus 246 tg~~~~~~~~~~~l~gH~~~V~slafsp~~~-dg~~LaSgs~DgtV~I 292 (1352)
... .. .+ .+..++++.+..... ...-|++|-.+|.|-+
T Consensus 72 ~Rl--WR------iK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 72 QRL--WR------IK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred cee--ee------ec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 332 11 12 223377777665322 2357899999988753
No 357
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.96 E-value=2.3 Score=50.96 Aligned_cols=253 Identities=13% Similarity=0.133 Sum_probs=128.9
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccC------------------ccceEEeccccceeEeccc
Q 000685 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGG------------------VDQRRLVGAKLEKLAEGEL 72 (1352)
Q Consensus 11 s~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~------------------~~~i~~vs~dg~~Lasgs~ 72 (1352)
...+....|||+|++++-. .++.|.+++..++...+--..+. ......-+||+++|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEE-ecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 4678889999999999988 57899999988875443222220 1112223488998888766
Q ss_pred ccCCCcc-cccc---C-C---ceEEEEE-----cCC--eEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeE-E
Q 000685 73 EHKGKPT-EAMR---G-G---SVKQVNF-----YDD--DVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHF-L 136 (1352)
Q Consensus 73 d~~g~~l-~~l~---~-g---~V~sVaF-----~Dg--~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~l-L 136 (1352)
|...... .+.. . + .+..+.+ ..- .+.++|+.+++................+..+.|.++++.+ +
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 6542221 1111 1 1 2444444 112 3556888777654222221122235678899999998733 3
Q ss_pred EEEecCcEE----EEEeeCCccccccccccCCCCe---EEEEEeeccccCCCC-EEEEEECCCcE--EEEECCCCeEEEE
Q 000685 137 VICCVNKAI----FLDLVTMRGRDIPKQELDNKSL---VCMEFLSRSAVGDVP-LVAFGSSDGVI--RVLSMISWKLVRR 206 (1352)
Q Consensus 137 asgs~D~~I----~wDl~t~~~~~i~~~~~h~~~V---~~vaf~P~s~Spdg~-~LasGs~DGtI--rIWDl~t~~~i~~ 206 (1352)
.....++.. .+|..++.++.+. ......+| ....|. .+++. ++.....||.- .+++...+. .+.
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~-~e~~~~Wv~~~~~~~~~----~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~ 274 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVL-EETSDGWVDVYDPPHFL----GPDGNEFLWISERDGYRHLYLYDLDGGK-PRQ 274 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEE-EEESSSSSSSSSEEEE-----TTTSSEEEEEEETTSSEEEEEEETTSSE-EEE
T ss_pred EEcccCCCEEEEEEEECCCCceeEEE-EecCCcceeeecccccc----cCCCCEEEEEEEcCCCcEEEEEcccccc-eec
Confidence 333433322 3388777654432 23333343 244442 13444 44455577754 445555555 344
Q ss_pred EecCCCCCeeEEEEeeeCCCCC-EEEEEeCCC----cEEEEeCC-CCCccceecccccccccccceEEEEeeccCCCCCE
Q 000685 207 YTGGHKGSISCLMTFMASSGEA-LLVSGGSDG----LLILWSAD-HGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQ 280 (1352)
Q Consensus 207 l~~gH~~~V~slawf~~s~dg~-~LaSgS~DG----tVrVWDl~-tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~ 280 (1352)
+. ...-.|..+.. ++++++ +..++..++ .|..-++. .+. ... |.........+.|+| ++++
T Consensus 275 lT-~G~~~V~~i~~--~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~-~~~------LT~~~~~~~~~~~Sp---dg~y 341 (353)
T PF00930_consen 275 LT-SGDWEVTSILG--WDEDNNRIYFTANGDNPGERHLYRVSLDSGGE-PKC------LTCEDGDHYSASFSP---DGKY 341 (353)
T ss_dssp SS--SSS-EEEEEE--EECTSSEEEEEESSGGTTSBEEEEEETTETTE-EEE------SSTTSSTTEEEEE-T---TSSE
T ss_pred cc-cCceeecccce--EcCCCCEEEEEecCCCCCceEEEEEEeCCCCC-eEe------ccCCCCCceEEEECC---CCCE
Confidence 44 44566766643 455544 445665532 44444555 332 221 222222226899999 6776
Q ss_pred EEE
Q 000685 281 LIT 283 (1352)
Q Consensus 281 LaS 283 (1352)
++-
T Consensus 342 ~v~ 344 (353)
T PF00930_consen 342 YVD 344 (353)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
No 358
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=94.92 E-value=0.076 Score=39.11 Aligned_cols=39 Identities=28% Similarity=0.577 Sum_probs=32.1
Q ss_pred CeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEe
Q 000685 201 WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243 (1352)
Q Consensus 201 ~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWD 243 (1352)
++++..+. .|...|.++. +.+++..+++++.|+.+++|+
T Consensus 2 ~~~~~~~~-~~~~~i~~~~---~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLK-GHTGPVTSVA---FSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEE-ecCCceeEEE---ECCCCCEEEEecCCCeEEEcC
Confidence 34556665 7889999998 567778999999999999996
No 359
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.83 E-value=6.8 Score=47.05 Aligned_cols=176 Identities=13% Similarity=0.067 Sum_probs=72.8
Q ss_pred EEEEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEEC---CC-cEEEEECCC-CeEEEEEecCCCCC-eeE
Q 000685 144 AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS---DG-VIRVLSMIS-WKLVRRYTGGHKGS-ISC 217 (1352)
Q Consensus 144 ~I~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~---DG-tIrIWDl~t-~~~i~~l~~gH~~~-V~s 217 (1352)
++.+|+.+++.+.+ .....++..+.|+| .+..+|+.|-. +. .-|||-+++ +...+.+. .|... +..
T Consensus 170 i~~idl~tG~~~~v---~~~~~wlgH~~fsP----~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~-~~~~~e~~g 241 (386)
T PF14583_consen 170 IFTIDLKTGERKVV---FEDTDWLGHVQFSP----TDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVH-RRMEGESVG 241 (386)
T ss_dssp EEEEETTT--EEEE---EEESS-EEEEEEET----TEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEE
T ss_pred EEEEECCCCceeEE---EecCccccCcccCC----CCCCEEEEeccCCcceeceEEEEEEcCCCcceeee-cCCCCcccc
Confidence 34557777765432 33467888899944 23445555542 22 236776653 33334433 33222 222
Q ss_pred EEEeeeCCCCCEEEEEe-----CCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCC----
Q 000685 218 LMTFMASSGEALLVSGG-----SDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADK---- 288 (1352)
Q Consensus 218 lawf~~s~dg~~LaSgS-----~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~Dg---- 288 (1352)
=. ++.++|..|.--+ .+..|.-+|+.+++... +. .......+-.++ |+.+++-=|.|.
T Consensus 242 HE--fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~-------~~-~~p~~~H~~ss~---Dg~L~vGDG~d~p~~v 308 (386)
T PF14583_consen 242 HE--FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR-------LM-EMPWCSHFMSSP---DGKLFVGDGGDAPVDV 308 (386)
T ss_dssp EE--EE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE-------EE-EE-SEEEEEE-T---TSSEEEEEE-------
T ss_pred cc--cccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE-------EE-eCCceeeeEEcC---CCCEEEecCCCCCccc
Confidence 22 3677877665422 24456667777764321 11 111122333344 777777555442
Q ss_pred ------------cEEEEECCCCeEEEEecC---CCcccccCC-ceeEEEeCCCCCEE--EEecCCe--EEec
Q 000685 289 ------------TLAIWDTVSFKELRRIKP---VPKLACHSV-ASWCHPRAPNLDIL--TCVKDSH--IWAI 340 (1352)
Q Consensus 289 ------------tV~IWDl~tg~~l~~~~~---~~~l~~hs~-~V~svafspdg~lL--S~s~Dg~--IWDi 340 (1352)
-|+++++..++...-..- ...+.+|.. .=....|+|||+.| .+...|. ||-+
T Consensus 309 ~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 309 ADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp ------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred cccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 456778877654221110 001122211 11367899999955 4545553 5544
No 360
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=94.79 E-value=0.29 Score=64.23 Aligned_cols=90 Identities=10% Similarity=0.058 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcccccccccchhhHHHHhccCChhHHHHHHHHHHHcCCcH-----HHHH
Q 000685 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGR-----EAAF 1093 (1352)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~-----~~af 1093 (1352)
.-|..|.......|+.+.|.+.|++....+-. ....-|..|+..|+..|+.+...++...+.+.|-.. |.-.
T Consensus 291 vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~---pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li 367 (697)
T PLN03081 291 VAWNSMLAGYALHGYSEEALCLYYEMRDSGVS---IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALV 367 (697)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHH
Confidence 46777888888888888888888776543311 011134455556666777777777666666666210 1111
Q ss_pred HHH-HcCCHHHHHHHHHHc
Q 000685 1094 SAA-ILGDNALMEKAWQDT 1111 (1352)
Q Consensus 1094 ~~~-~lgd~~~~~~~l~~~ 1111 (1352)
.++ ..|+++++.+++.+.
T Consensus 368 ~~y~k~G~~~~A~~vf~~m 386 (697)
T PLN03081 368 DLYSKWGRMEDARNVFDRM 386 (697)
T ss_pred HHHHHCCCHHHHHHHHHhC
Confidence 122 456666666665543
No 361
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=94.74 E-value=0.95 Score=62.95 Aligned_cols=121 Identities=20% Similarity=0.185 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcccccccccchhhHHHHhccCChhHHHHHHHHHHHcCC-cHHH----HH
Q 000685 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGL-GREA----AF 1093 (1352)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~a~~~~~-~~~~----af 1093 (1352)
..+..||+..+..|+++.|+++|+++-.. ++...- -+..|..+|...|+.+...++.+.+..... .-+. +.
T Consensus 604 ~~~~~La~~~~~~g~~~~A~~~y~~al~~-~P~~~~---a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~ 679 (1157)
T PRK11447 604 RIDLTLADWAQQRGDYAAARAAYQRVLTR-EPGNAD---ARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVAL 679 (1157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 46778999999999999999999988442 221111 234556788899999999888887776532 1122 22
Q ss_pred HHHHcCCHHHHHHHHHHcCCc----H----HHHHH---HHHcC-CCchHHHHHHHHHHHhhh
Q 000685 1094 SAAILGDNALMEKAWQDTGML----A----EAVLH---AHAHG-RPSLKNLVEAWNKMLQKE 1143 (1352)
Q Consensus 1094 ~~~~lgd~~~~~~~l~~~~~~----~----~A~~~---A~t~~-~~~~~~~~~~w~~~l~~~ 1143 (1352)
....+|+.+++++++.+.-.. + .|..+ |+-|- ..+..+.++.|++-|...
T Consensus 680 ~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~ 741 (1157)
T PRK11447 680 AWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVAS 741 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 222789999999988875332 1 22221 33332 234567777888777533
No 362
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=94.67 E-value=0.92 Score=44.79 Aligned_cols=101 Identities=14% Similarity=0.134 Sum_probs=62.7
Q ss_pred eeEEEEeeeCCC-CCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEE
Q 000685 215 ISCLMTFMASSG-EALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIW 293 (1352)
Q Consensus 215 V~slawf~~s~d-g~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IW 293 (1352)
|++++.+.+..+ .+.|+.||.|..||+|+-. ..+.+ +. -.+.|++++-.. ...++.+-.+|+|-+|
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~E------i~-e~~~v~~L~~~~----~~~F~Y~l~NGTVGvY 68 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAE------IT-ETDKVTSLCSLG----GGRFAYALANGTVGVY 68 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEE------Ee-cccceEEEEEcC----CCEEEEEecCCEEEEE
Confidence 566664444443 3689999999999999854 23332 22 335577777765 5789999999999999
Q ss_pred ECCCCeEEEEecCCCcccccCCceeEEEeC-CCC----CEEEEecCCeE
Q 000685 294 DTVSFKELRRIKPVPKLACHSVASWCHPRA-PNL----DILTCVKDSHI 337 (1352)
Q Consensus 294 Dl~tg~~l~~~~~~~~l~~hs~~V~svafs-pdg----~lLS~s~Dg~I 337 (1352)
+-. .+.++. .... .+.++.+. -++ .+++|-.+|+|
T Consensus 69 ~~~-~RlWRi-------KSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 69 DRS-QRLWRI-------KSKN-QVTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred eCc-ceeeee-------ccCC-CeEEEEEEcCCCCCceEEEEEecCCeE
Confidence 853 333332 2222 24444433 333 27777666653
No 363
>PLN03077 Protein ECB2; Provisional
Probab=94.66 E-value=0.36 Score=64.93 Aligned_cols=136 Identities=12% Similarity=0.067 Sum_probs=76.1
Q ss_pred HHhcCCHHHHHHHHhhcCh---hhHHHHHHHHHhCCcchhhccccccc------Cc-cEE----EeecccccHHHHHHHH
Q 000685 911 LAAYGDSVSAVKWASRLGR---EHHDDLAQFMLGMGYATEALHLPGIS------KR-LEF----DLAMQSNDLKRALQCL 976 (1352)
Q Consensus 911 ~~~~~d~~~a~~~~~~i~~---~~~~~~a~fl~~~G~~e~Al~~~~ds------~~-~kf----~la~~~g~l~~a~~~~ 976 (1352)
....|+++.|.+++..+.. ..++.++.-+.+.|..++|+++...- |+ .-| ..+.++|+++.|.++.
T Consensus 333 y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~ 412 (857)
T PLN03077 333 YLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLH 412 (857)
T ss_pred HHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHH
Confidence 3445888888888777533 23677777777888888888776431 00 001 1123467777777776
Q ss_pred hhcccccccCCCCCCCCccccccccccchhhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccccccc
Q 000685 977 ITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQG 1056 (1352)
Q Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~~~~~~~ 1056 (1352)
.++... |+......|..|.+...+.|+++.|++.|++..+-+.
T Consensus 413 ~~~~~~------------------------------g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~------- 455 (857)
T PLN03077 413 ELAERK------------------------------GLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV------- 455 (857)
T ss_pred HHHHHh------------------------------CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCe-------
Confidence 443222 1111225666677777777777777777776633111
Q ss_pred ccchhhHHHHhccCChhHHHHHHHHHH
Q 000685 1057 HELRGLALRLANHGELTRLSGLVTNLI 1083 (1352)
Q Consensus 1057 ~~~~~l~ll~~~~g~~~~l~~l~~~a~ 1083 (1352)
.-+..|..-|+..|+.+...++.+.+.
T Consensus 456 vs~~~mi~~~~~~g~~~eA~~lf~~m~ 482 (857)
T PLN03077 456 ISWTSIIAGLRLNNRCFEALIFFRQML 482 (857)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 134445555555555555444444443
No 364
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.56 E-value=3.2 Score=47.32 Aligned_cols=185 Identities=11% Similarity=0.077 Sum_probs=112.7
Q ss_pred CEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCCceEEE
Q 000685 13 KIVKIQLHPTHPWLVTADASD--HVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQV 90 (1352)
Q Consensus 13 ~V~~lafSPdg~~LaTgs~DG--~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~sV 90 (1352)
-...+.|..+|.++-+.+.-| .|+.+|+.+|+.+....... +++..|- ++.++.++.+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-----------~~FgEGi---------t~~~d~l~qL 105 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-----------RYFGEGI---------TILGDKLYQL 105 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-----------T--EEEE---------EEETTEEEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-----------cccceeE---------EEECCEEEEE
Confidence 356788877788777777666 89999999999887765332 2333331 2335788999
Q ss_pred EEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEEEeeCCccccccccccC---CCCe
Q 000685 91 NFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELD---NKSL 167 (1352)
Q Consensus 91 aF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl~t~~~~~i~~~~~h---~~~V 167 (1352)
.|.++...+||..+-+.+. .... ...=+.++ .+++.++.+-+.+.+..+|..+.+.......... -..+
T Consensus 106 TWk~~~~f~yd~~tl~~~~----~~~y--~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~L 177 (264)
T PF05096_consen 106 TWKEGTGFVYDPNTLKKIG----TFPY--PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNL 177 (264)
T ss_dssp ESSSSEEEEEETTTTEEEE----EEE---SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---E
T ss_pred EecCCeEEEEccccceEEE----EEec--CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCc
Confidence 9999999999998865542 1111 12234555 4566688888888888889877654321111112 3467
Q ss_pred EEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEec-----------CC---CCCeeEEEEeeeCCCCCEEEEE
Q 000685 168 VCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTG-----------GH---KGSISCLMTFMASSGEALLVSG 233 (1352)
Q Consensus 168 ~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~-----------gH---~~~V~slawf~~s~dg~~LaSg 233 (1352)
+.+.|. +|...+=.-....|...|..+|+++..+.- .+ .+-.+.|+| .+..+++++||
T Consensus 178 NELE~i------~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAy--d~~~~~l~vTG 249 (264)
T PF05096_consen 178 NELEYI------NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAY--DPETDRLFVTG 249 (264)
T ss_dssp EEEEEE------TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEE--ETTTTEEEEEE
T ss_pred EeEEEE------cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeE--eCCCCEEEEEe
Confidence 778884 576666666677888899999998877620 01 245677872 34455566665
No 365
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=94.41 E-value=0.14 Score=59.14 Aligned_cols=168 Identities=18% Similarity=0.151 Sum_probs=72.0
Q ss_pred hHHHhcCCHHHHHHHHhhc---Chh---hHHHHHHHHHhCCcchhhccccccc----CccE-----EEeecccccHHHHH
Q 000685 909 RCLAAYGDSVSAVKWASRL---GRE---HHDDLAQFMLGMGYATEALHLPGIS----KRLE-----FDLAMQSNDLKRAL 973 (1352)
Q Consensus 909 ~~~~~~~d~~~a~~~~~~i---~~~---~~~~~a~fl~~~G~~e~Al~~~~ds----~~~k-----f~la~~~g~l~~a~ 973 (1352)
.++...||++.|.+...++ +.. ...+++.+ ...|.+++|+.+.... ++.. .+++.+.++.+.+.
T Consensus 52 ~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 130 (280)
T PF13429_consen 52 DLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAE 130 (280)
T ss_dssp -------------------------------------------------------------------H-HHHTT-HHHHH
T ss_pred cccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHH
Confidence 4556678888888877662 222 35667777 5778888888776441 1111 13444566666666
Q ss_pred HHHhhcccccccCCCCCCCCccccccccccchhhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcccc
Q 000685 974 QCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGA 1053 (1352)
Q Consensus 974 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~~~~ 1053 (1352)
++...+..... ......-|..+|......|+.+.|++||+++-... +...
T Consensus 131 ~~l~~~~~~~~-----------------------------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~ 180 (280)
T PF13429_consen 131 ELLEKLEELPA-----------------------------APDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDP 180 (280)
T ss_dssp HHHHHHHH-T--------------------------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-H
T ss_pred HHHHHHHhccC-----------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCH
Confidence 66532221111 11223789999999999999999999999984422 1100
Q ss_pred cccccchhhHHHHhccCChhHHHHHHHHHHHcC----CcHHHHHHH--HHcCCHHHHHHHHHHc
Q 000685 1054 LQGHELRGLALRLANHGELTRLSGLVTNLISLG----LGREAAFSA--AILGDNALMEKAWQDT 1111 (1352)
Q Consensus 1054 ~~~~~~~~l~ll~~~~g~~~~l~~l~~~a~~~~----~~~~~af~~--~~lgd~~~~~~~l~~~ 1111 (1352)
- -...|+.++...|+.+.++.+.+...... .. -.+|.. ..+|+.++++..|.+.
T Consensus 181 ~---~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~-~~~la~~~~~lg~~~~Al~~~~~~ 240 (280)
T PF13429_consen 181 D---ARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDL-WDALAAAYLQLGRYEEALEYLEKA 240 (280)
T ss_dssp H---HHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCH-CHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHH-HHHHHHHhcccccccccccccccc
Confidence 0 02345567778899998777777766653 33 344543 3999999999999864
No 366
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.40 E-value=5.1 Score=47.15 Aligned_cols=214 Identities=12% Similarity=-0.012 Sum_probs=109.2
Q ss_pred EEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCCceEEEEEcCCe
Q 000685 18 QLHPTHP-WLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDD 96 (1352)
Q Consensus 18 afSPdg~-~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~sVaF~Dg~ 96 (1352)
.|.++.. ++.+--..+.|.-||..+|+...--..+....+..+...++.+++ +..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~------------------------~~g 86 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIAC------------------------EHG 86 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEE------------------------ccc
Confidence 4666666 344444667888888776644332222333333333344444443 223
Q ss_pred EEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEe-----cC-----c-EEEEEeeCCccccccccccCCC
Q 000685 97 VRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICC-----VN-----K-AIFLDLVTMRGRDIPKQELDNK 165 (1352)
Q Consensus 97 IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs-----~D-----~-~I~wDl~t~~~~~i~~~~~h~~ 165 (1352)
+.+++..++...........+......+.+...|+|..++-+-+ .+ + ++++|.. +.. +.....+-.
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~--~~l~~~~~~ 163 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGV--VRLLDDDLT 163 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCE--EEeecCcEE
Confidence 33444433222111111222222345566777888873333333 11 1 3344542 221 111233344
Q ss_pred CeEEEEEeeccccCCCCEEEEEEC-CCcEEEEECCC--C----eEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCC-
Q 000685 166 SLVCMEFLSRSAVGDVPLVAFGSS-DGVIRVLSMIS--W----KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDG- 237 (1352)
Q Consensus 166 ~V~~vaf~P~s~Spdg~~LasGs~-DGtIrIWDl~t--~----~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DG- 237 (1352)
.-+.|+| |||++.++.... .+.|.-|++.. + +........+.+..-.++ ...+|++.+++..+|
T Consensus 164 ~~NGla~-----SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~---vDadG~lw~~a~~~g~ 235 (307)
T COG3386 164 IPNGLAF-----SPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMA---VDADGNLWVAAVWGGG 235 (307)
T ss_pred ecCceEE-----CCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceE---EeCCCCEEEecccCCc
Confidence 5567999 889987777654 47777777652 1 211122212334444444 577888887655554
Q ss_pred cEEEEeCCCCCccceecccccccccccceEEEEeec
Q 000685 238 LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSR 273 (1352)
Q Consensus 238 tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp 273 (1352)
.|.+|+.. ++.+..+ .-....+.+++|--
T Consensus 236 ~v~~~~pd-G~l~~~i------~lP~~~~t~~~FgG 264 (307)
T COG3386 236 RVVRFNPD-GKLLGEI------KLPVKRPTNPAFGG 264 (307)
T ss_pred eEEEECCC-CcEEEEE------ECCCCCCccceEeC
Confidence 89999998 7766542 22335577778753
No 367
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.31 E-value=1.1 Score=55.15 Aligned_cols=169 Identities=14% Similarity=0.063 Sum_probs=97.3
Q ss_pred EecCCCCCEEEEEEcCCCCEEEEEe---CC-CcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCcccc
Q 000685 6 AFRPTNDKIVKIQLHPTHPWLVTAD---AS-DHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEA 81 (1352)
Q Consensus 6 ~L~gHs~~V~~lafSPdg~~LaTgs---~D-G~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~ 81 (1352)
.+..-...+..-+|+|++..++..+ .. ..+.++|+.+++.............-..+|||+.|+......
T Consensus 187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rd------- 259 (425)
T COG0823 187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRD------- 259 (425)
T ss_pred EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCC-------
Confidence 3444445677788999998766553 22 459999999987766666555555556679998888765332
Q ss_pred ccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE---EEEeeCCcccccc
Q 000685 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI---FLDLVTMRGRDIP 158 (1352)
Q Consensus 82 l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I---~wDl~t~~~~~i~ 158 (1352)
..-.|.+.|+..+.... .... ...-..-.|+|||+.++.+....+.- +.|........+
T Consensus 260 -----------g~~~iy~~dl~~~~~~~-----Lt~~-~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri- 321 (425)
T COG0823 260 -----------GSPDIYLMDLDGKNLPR-----LTNG-FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL- 321 (425)
T ss_pred -----------CCccEEEEcCCCCccee-----cccC-CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe-
Confidence 12345556666654221 1111 22223567999999555554444433 336655543222
Q ss_pred ccccCCCCeEEEEEeeccccCCCCEEEEEECC-Cc--EEEEECCCCeEEEE
Q 000685 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSD-GV--IRVLSMISWKLVRR 206 (1352)
Q Consensus 159 ~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~D-Gt--IrIWDl~t~~~i~~ 206 (1352)
......-.+-.| +|||++|+..+.. |. |.+.|+.++..++.
T Consensus 322 --T~~~~~~~~p~~-----SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~ 365 (425)
T COG0823 322 --TFSGGGNSNPVW-----SPDGDKIVFESSSGGQWDIDKNDLASGGKIRI 365 (425)
T ss_pred --eccCCCCcCccC-----CCCCCEEEEEeccCCceeeEEeccCCCCcEEE
Confidence 222211114445 8899999888743 43 55666655543333
No 368
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=94.23 E-value=0.67 Score=60.32 Aligned_cols=140 Identities=9% Similarity=0.024 Sum_probs=92.8
Q ss_pred CCCEEEEE-ECCCcEEEEECCCCeEEEEEecCCC-CCeeEEEEeeeCC-----CCCEEEEEeCCCcEEEEeCCCCC--cc
Q 000685 180 DVPLVAFG-SSDGVIRVLSMISWKLVRRYTGGHK-GSISCLMTFMASS-----GEALLVSGGSDGLLILWSADHGQ--DS 250 (1352)
Q Consensus 180 dg~~LasG-s~DGtIrIWDl~t~~~i~~l~~gH~-~~V~slawf~~s~-----dg~~LaSgS~DGtVrVWDl~tg~--~~ 250 (1352)
+..+|+.- .....|.-.|++.|+.+..+. .|. ..|..++ ... ...--+.|-.++.+..||.+-.. ++
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~-~~~~~~v~~~~---p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v 567 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWK-VHDDIPVVDIA---PDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV 567 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEee-cCCCcceeEec---ccccccccCCCceEEEECCCceEEeccCCCCCcee
Confidence 44444443 356789999999999999997 444 4466664 221 23345667888999999998643 22
Q ss_pred ceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEEE
Q 000685 251 RELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILT 330 (1352)
Q Consensus 251 ~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lLS 330 (1352)
.. ....+ .......|++-.. .-+||.|+.+|.||+||- .|+.-++ .+.+-..+|..|..+.||++|.
T Consensus 568 ~~--~~k~Y-~~~~~Fs~~aTt~----~G~iavgs~~G~IRLyd~-~g~~AKT-----~lp~lG~pI~~iDvt~DGkwil 634 (794)
T PF08553_consen 568 DS--QSKQY-SSKNNFSCFATTE----DGYIAVGSNKGDIRLYDR-LGKRAKT-----ALPGLGDPIIGIDVTADGKWIL 634 (794)
T ss_pred ec--ccccc-ccCCCceEEEecC----CceEEEEeCCCcEEeecc-cchhhhh-----cCCCCCCCeeEEEecCCCcEEE
Confidence 11 01111 1233456666553 569999999999999993 4432222 2667788999999999999887
Q ss_pred EecCCe
Q 000685 331 CVKDSH 336 (1352)
Q Consensus 331 ~s~Dg~ 336 (1352)
+..+..
T Consensus 635 aTc~ty 640 (794)
T PF08553_consen 635 ATCKTY 640 (794)
T ss_pred Eeecce
Confidence 766665
No 369
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=94.10 E-value=0.84 Score=55.72 Aligned_cols=223 Identities=13% Similarity=0.041 Sum_probs=134.0
Q ss_pred hHHHhcCCHHHHHHHHhh---cChhhH----HHHHHHHHhCCcchhhcccc----cccCcc------EEEeecccccHHH
Q 000685 909 RCLAAYGDSVSAVKWASR---LGREHH----DDLAQFMLGMGYATEALHLP----GISKRL------EFDLAMQSNDLKR 971 (1352)
Q Consensus 909 ~~~~~~~d~~~a~~~~~~---i~~~~~----~~~a~fl~~~G~~e~Al~~~----~ds~~~------kf~la~~~g~l~~ 971 (1352)
+.+..+|+++.|.+++.. ..++.. -..+++...+|-++.|++.. ...|++ ..++.++.|+.+.
T Consensus 126 ~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 126 EAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHH
Confidence 345778999999998877 333321 13377888899999988843 332443 3677788899999
Q ss_pred HHHHHhhcccccccCCCCCCCCccccc-----cccccchhhhhhhhhhhhhHH--------------HHHHHHHHHHHcC
Q 000685 972 ALQCLITMSNSRDIGQDHPGLDLNDIL-----TLTTKKENIVEAVQGIVKFAK--------------EFLDLIDAADATG 1032 (1352)
Q Consensus 972 a~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--------------~w~~l~~~al~~g 1032 (1352)
|++++..+.+.+.++.+ ++.++. .+... .....+.....+ .+..++......|
T Consensus 206 a~~~l~~l~k~~~~~~~----~~~~l~~~a~~~l~~~----~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g 277 (398)
T PRK10747 206 LLDILPSMAKAHVGDEE----HRAMLEQQAWIGLMDQ----AMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECD 277 (398)
T ss_pred HHHHHHHHHHcCCCCHH----HHHHHHHHHHHHHHHH----HHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCC
Confidence 99888666555333211 121111 01110 000111122223 4445588999999
Q ss_pred CHHHHHHHHHHHHhcCCcccccccccchhhHHHHhc--cCChhHHHHHHHHHHHcC-CcHHHHHH----HHHcCCHHHHH
Q 000685 1033 QANIAREALKRLAAAGSVKGALQGHELRGLALRLAN--HGELTRLSGLVTNLISLG-LGREAAFS----AAILGDNALME 1105 (1352)
Q Consensus 1033 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~--~g~~~~l~~l~~~a~~~~-~~~~~af~----~~~lgd~~~~~ 1105 (1352)
+.+.|++.+.+.-... .-..|.++|.. .|+.++..+.++...++. +.....+. +...|+.+++.
T Consensus 278 ~~~~A~~~L~~~l~~~---------~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~ 348 (398)
T PRK10747 278 DHDTAQQIILDGLKRQ---------YDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEAS 348 (398)
T ss_pred CHHHHHHHHHHHHhcC---------CCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999998874322 33455555553 477766666665555443 33122222 22789999999
Q ss_pred HHHHHcCCc----HHHHHHHHHcCCC-chHHHHHHHHHHHhhhcCCCC
Q 000685 1106 KAWQDTGML----AEAVLHAHAHGRP-SLKNLVEAWNKMLQKEVDHTP 1148 (1352)
Q Consensus 1106 ~~l~~~~~~----~~A~~~A~t~~~~-~~~~~~~~w~~~l~~~~~~~~ 1148 (1352)
+.|.+.=.. .-..++|+.|-.. +..+..+.|++.|.......|
T Consensus 349 ~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 396 (398)
T PRK10747 349 LAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLTLQNNP 396 (398)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccCC
Confidence 988876333 3335677776643 457778888888875544443
No 370
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=93.99 E-value=0.25 Score=66.61 Aligned_cols=89 Identities=10% Similarity=0.028 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcccccccccchhhHHHHhccCChhHHHHHHHHHHHcCCc-H----HHHH
Q 000685 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLG-R----EAAF 1093 (1352)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~-~----~~af 1093 (1352)
.-|..+|......|+++.|+++|+++-.. ++..+. -+..|..++...|+.+....+.+.|.+..-. - +.+.
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l-~Pd~~~---a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~ 685 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALEL-EPNNSN---YQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAY 685 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 56778888888888888888888877542 232221 1223445666778877777777766664322 0 2222
Q ss_pred HHHHcCCHHHHHHHHHHc
Q 000685 1094 SAAILGDNALMEKAWQDT 1111 (1352)
Q Consensus 1094 ~~~~lgd~~~~~~~l~~~ 1111 (1352)
....+||.+++++.|.+.
T Consensus 686 al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 686 VNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 222677777777766654
No 371
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.96 E-value=3.3 Score=52.96 Aligned_cols=235 Identities=14% Similarity=0.086 Sum_probs=117.0
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCcEEEEEeccC-ccceEEeccccceeEecccccCCCccccccCCceEEEEEcC
Q 000685 22 THPWLVTADAS------DHVSVWNWEHRQVIYELKAGG-VDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYD 94 (1352)
Q Consensus 22 dg~~LaTgs~D------G~VrVWDl~tg~~i~t~~~~~-~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~sVaF~D 94 (1352)
.+..++.|+.+ ..+..+|..+++......... ....-.+..++...+.|+.+. +. . .-
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~-~~-------~-------~l 348 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDS-GS-------D-------RL 348 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccC-CC-------c-------cc
Confidence 35567777766 467788887764433222111 111112224556666666542 00 0 12
Q ss_pred CeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE------EEEeeCCccccccccccCCCCeE
Q 000685 95 DDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI------FLDLVTMRGRDIPKQELDNKSLV 168 (1352)
Q Consensus 95 g~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I------~wDl~t~~~~~i~~~~~h~~~V~ 168 (1352)
.++-.||..+++... ..+.........+.. -+|. +.++|+.|+.- ++|..+.+...+...........
T Consensus 349 ~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~----l~g~-iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~g 422 (571)
T KOG4441|consen 349 SSVERYDPRTNQWTP-VAPMNTKRSDFGVAV----LDGK-LYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHG 422 (571)
T ss_pred ceEEEecCCCCceec-cCCccCccccceeEE----ECCE-EEEEeccccccccccEEEecCCCCcccccCCCCcceeeeE
Confidence 345556665555432 111111111111211 2454 78888877644 45666554433322222222333
Q ss_pred EEEEeeccccCCCCEEEEEECCC------cEEEEECCCCeEE--EEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCc--
Q 000685 169 CMEFLSRSAVGDVPLVAFGSSDG------VIRVLSMISWKLV--RRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL-- 238 (1352)
Q Consensus 169 ~vaf~P~s~Spdg~~LasGs~DG------tIrIWDl~t~~~i--~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGt-- 238 (1352)
.+.+ +|.+.++|+.++ ++..||..+++.. ..+.... .-..++ .-++.+.+.|+.|+.
T Consensus 423 v~~~-------~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R--~~~g~a----~~~~~iYvvGG~~~~~~ 489 (571)
T KOG4441|consen 423 VAVL-------GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR--SGFGVA----VLNGKIYVVGGFDGTSA 489 (571)
T ss_pred EEEE-------CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc--ccceEE----EECCEEEEECCccCCCc
Confidence 3444 688888888554 5778888775443 2221111 111122 227788888888873
Q ss_pred ---EEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCC-----cEEEEECCCCe
Q 000685 239 ---LILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADK-----TLAIWDTVSFK 299 (1352)
Q Consensus 239 ---VrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~Dg-----tV~IWDl~tg~ 299 (1352)
|..||..+.+... ...+......+..+.+ ++.+.+.|+.|+ +|..||..+.+
T Consensus 490 ~~~VE~ydp~~~~W~~----v~~m~~~rs~~g~~~~-----~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 490 LSSVERYDPETNQWTM----VAPMTSPRSAVGVVVL-----GGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred cceEEEEcCCCCceeE----cccCccccccccEEEE-----CCEEEEEecccCccccceeEEcCCCCCc
Confidence 7778888766432 1112222222322333 467888888775 45556655433
No 372
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=93.85 E-value=21 Score=43.78 Aligned_cols=53 Identities=9% Similarity=0.073 Sum_probs=40.1
Q ss_pred CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEe
Q 000685 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTF 221 (1352)
Q Consensus 164 ~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf 221 (1352)
.+++..|+. ||++++|+.-..+|.+.+.+..-.+....+..+-......+.|+
T Consensus 216 ~~~i~~iav-----Spng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WC 268 (410)
T PF04841_consen 216 DGPIIKIAV-----SPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWC 268 (410)
T ss_pred CCCeEEEEE-----CCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEE
Confidence 457899999 88999999999999999988765566655543334566677775
No 373
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.84 E-value=0.25 Score=60.89 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=66.2
Q ss_pred CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCee-EEEEeeeCCCCCEEEEEeCCCcEEEE
Q 000685 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSIS-CLMTFMASSGEALLVSGGSDGLLILW 242 (1352)
Q Consensus 164 ~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~-slawf~~s~dg~~LaSgS~DGtVrVW 242 (1352)
...|.-+.| +|.-.+||++..+|.|.+..+. ++.+.++. -|+..++ +++| .+||++|+.|-.||+|++.
T Consensus 20 ~~~i~~~ew-----nP~~dLiA~~t~~gelli~R~n-~qRlwtip-~p~~~v~~sL~W---~~DGkllaVg~kdG~I~L~ 89 (665)
T KOG4640|consen 20 PINIKRIEW-----NPKMDLIATRTEKGELLIHRLN-WQRLWTIP-IPGENVTASLCW---RPDGKLLAVGFKDGTIRLH 89 (665)
T ss_pred ccceEEEEE-----cCccchhheeccCCcEEEEEec-cceeEecc-CCCCccceeeee---cCCCCEEEEEecCCeEEEE
Confidence 345677899 6788999999999999999988 78888875 5777777 9985 7899999999999999999
Q ss_pred eCCCCCccc
Q 000685 243 SADHGQDSR 251 (1352)
Q Consensus 243 Dl~tg~~~~ 251 (1352)
|+.++..+.
T Consensus 90 Dve~~~~l~ 98 (665)
T KOG4640|consen 90 DVEKGGRLV 98 (665)
T ss_pred EccCCCcee
Confidence 999887554
No 374
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=93.68 E-value=3 Score=49.20 Aligned_cols=143 Identities=12% Similarity=0.068 Sum_probs=86.5
Q ss_pred CeEEEEEec----------CcEE-EEEeeCC-----ccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEE
Q 000685 133 RHFLVICCV----------NKAI-FLDLVTM-----RGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVL 196 (1352)
Q Consensus 133 ~~lLasgs~----------D~~I-~wDl~t~-----~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIW 196 (1352)
..++++|.. .|.+ ++++... +.+.+. .....+.|++++-. +.+|+.+. ++.|.+|
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~-~~~~~g~V~ai~~~-------~~~lv~~~-g~~l~v~ 112 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIH-STEVKGPVTAICSF-------NGRLVVAV-GNKLYVY 112 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEE-EEEESS-EEEEEEE-------TTEEEEEE-TTEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEE-EEeecCcceEhhhh-------CCEEEEee-cCEEEEE
Confidence 347777642 1545 4477663 222221 23347889998772 33455553 5789999
Q ss_pred ECCCCe-EEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCC-CccceecccccccccccceEEEEeecc
Q 000685 197 SMISWK-LVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHG-QDSRELVPKLSLKAHDGGVVAVELSRV 274 (1352)
Q Consensus 197 Dl~t~~-~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg-~~~~~~~~~~~l~gH~~~V~slafsp~ 274 (1352)
++...+ ....-.......+.++.. .+++++.|.....|.++.++.. ..+..+ .-......++++.|-+
T Consensus 113 ~l~~~~~l~~~~~~~~~~~i~sl~~-----~~~~I~vgD~~~sv~~~~~~~~~~~l~~v----a~d~~~~~v~~~~~l~- 182 (321)
T PF03178_consen 113 DLDNSKTLLKKAFYDSPFYITSLSV-----FKNYILVGDAMKSVSLLRYDEENNKLILV----ARDYQPRWVTAAEFLV- 182 (321)
T ss_dssp EEETTSSEEEEEEE-BSSSEEEEEE-----ETTEEEEEESSSSEEEEEEETTTE-EEEE----EEESS-BEEEEEEEE--
T ss_pred EccCcccchhhheecceEEEEEEec-----cccEEEEEEcccCEEEEEEEccCCEEEEE----EecCCCccEEEEEEec-
Confidence 998777 554443233447777763 2669999999999988865542 111110 0122345688888886
Q ss_pred CCCCCEEEEEECCCcEEEEECC
Q 000685 275 MGGSPQLITIGADKTLAIWDTV 296 (1352)
Q Consensus 275 ~~dg~~LaSgs~DgtV~IWDl~ 296 (1352)
+++.++.+..+|.+.++...
T Consensus 183 --d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 183 --DEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp --SSSEEEEEETTSEEEEEEE-
T ss_pred --CCcEEEEEcCCCeEEEEEEC
Confidence 34699999999999999865
No 375
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.64 E-value=0.21 Score=64.61 Aligned_cols=101 Identities=20% Similarity=0.305 Sum_probs=71.6
Q ss_pred EEEEEecCcEEEE-EeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCC
Q 000685 135 FLVICCVNKAIFL-DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKG 213 (1352)
Q Consensus 135 lLasgs~D~~I~w-Dl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~ 213 (1352)
+++.|++.|-+.. |+.. .............+|+|++| +.+|..++.|-.+|.|.+||+..++.++.+. .|..
T Consensus 101 ~ivi~Ts~ghvl~~d~~~-nL~~~~~ne~v~~~Vtsvaf-----n~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~-e~~a 173 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTG-NLGPLHQNERVQGPVTSVAF-----NQDGSLLLAGLGDGHVTVWDMHRAKILKVIT-EHGA 173 (1206)
T ss_pred eEEEEcCchhhhhhhhhc-ccchhhcCCccCCcceeeEe-----cCCCceeccccCCCcEEEEEccCCcceeeee-ecCC
Confidence 7888888877755 4433 22222223344779999999 7899999999999999999999999988886 6666
Q ss_pred CeeEEEEeeeCCCCCEEEEEeCCCcEEEEeC
Q 000685 214 SISCLMTFMASSGEALLVSGGSDGLLILWSA 244 (1352)
Q Consensus 214 ~V~slawf~~s~dg~~LaSgS~DGtVrVWDl 244 (1352)
+++.+-......++..+.++...|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 6666532223344556777777776 6665
No 376
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.56 E-value=0.23 Score=54.68 Aligned_cols=150 Identities=20% Similarity=0.101 Sum_probs=100.5
Q ss_pred CCHHHHHHHHhhcChhhHHHHHHHHHhCCcchhhcccccccCccEEEeecccccHHHHHHHHhhcccccccCCCCCCCCc
Q 000685 915 GDSVSAVKWASRLGREHHDDLAQFMLGMGYATEALHLPGISKRLEFDLAMQSNDLKRALQCLITMSNSRDIGQDHPGLDL 994 (1352)
Q Consensus 915 ~d~~~a~~~~~~i~~~~~~~~a~fl~~~G~~e~Al~~~~ds~~~kf~la~~~g~l~~a~~~~~~~~~~~~~~~~~~~~~~ 994 (1352)
..|+.|+++-++-+ +.++...-||-++|.+++|++...- |++.=.| ++.
T Consensus 90 e~YrkAlsl~p~~G-dVLNNYG~FLC~qg~~~eA~q~F~~-----------------Al~~P~Y-------~~~------ 138 (250)
T COG3063 90 ESYRKALSLAPNNG-DVLNNYGAFLCAQGRPEEAMQQFER-----------------ALADPAY-------GEP------ 138 (250)
T ss_pred HHHHHHHhcCCCcc-chhhhhhHHHHhCCChHHHHHHHHH-----------------HHhCCCC-------CCc------
Confidence 44455555444422 4578888999999999988875432 3222111 111
Q ss_pred cccccccccchhhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcccccccccchhhHHHHhccCChhH
Q 000685 995 NDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTR 1074 (1352)
Q Consensus 995 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~ 1074 (1352)
..-|.-+|=-|+++|+++-|++-|+++ |+.....-..
T Consensus 139 -----------------------s~t~eN~G~Cal~~gq~~~A~~~l~ra--------------------L~~dp~~~~~ 175 (250)
T COG3063 139 -----------------------SDTLENLGLCALKAGQFDQAEEYLKRA--------------------LELDPQFPPA 175 (250)
T ss_pred -----------------------chhhhhhHHHHhhcCCchhHHHHHHHH--------------------HHhCcCCChH
Confidence 167888999999999999999999999 4556677788
Q ss_pred HHHHHHHHHHcCCcHHHHHHHH--HcCCH-HHHHHHHHHcCCcHHHHHHHHHcCCCchHHHHHHHHHHHhhhcCCCCc
Q 000685 1075 LSGLVTNLISLGLGREAAFSAA--ILGDN-ALMEKAWQDTGMLAEAVLHAHAHGRPSLKNLVEAWNKMLQKEVDHTPT 1149 (1352)
Q Consensus 1075 l~~l~~~a~~~~~~~~~af~~~--~lgd~-~~~~~~l~~~~~~~~A~~~A~t~~~~~~~~~~~~w~~~l~~~~~~~~~ 1149 (1352)
+.+|++.-.+.|++ --|-..+ +.+.. ..+.. +=+.+.+|+.-|. ...+..|...|++.-..++.
T Consensus 176 ~l~~a~~~~~~~~y-~~Ar~~~~~~~~~~~~~A~s-------L~L~iriak~~gd---~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 176 LLELARLHYKAGDY-APARLYLERYQQRGGAQAES-------LLLGIRIAKRLGD---RAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHHHhcccc-hHHHHHHHHHHhcccccHHH-------HHHHHHHHHHhcc---HHHHHHHHHHHHHhCCCcHH
Confidence 88999999999998 3222222 22222 22222 3357789998883 56778999999987766654
No 377
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=93.49 E-value=14 Score=44.77 Aligned_cols=203 Identities=11% Similarity=0.051 Sum_probs=129.4
Q ss_pred EEEEEcCCCCEE-EEEeCCCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCCceEEEEEc
Q 000685 15 VKIQLHPTHPWL-VTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFY 93 (1352)
Q Consensus 15 ~~lafSPdg~~L-aTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~sVaF~ 93 (1352)
..+++++.++.+ ++...++.|.+.|..+.+.+.....+....-..+.++++.+....... .
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~------------------~ 138 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGN------------------G 138 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEeccc------------------C
Confidence 467888888844 444456999999988888888887776555556667776665543210 2
Q ss_pred CCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EEEeeCCccccccc---cccCCCCeEE
Q 000685 94 DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPK---QELDNKSLVC 169 (1352)
Q Consensus 94 Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~wDl~t~~~~~i~~---~~~h~~~V~~ 169 (1352)
++.+.+.|..+++.+.. ...+. .+ ..++++|++...+++-..++.+ .+|........ .. ..........
T Consensus 139 ~~~vsvid~~t~~~~~~---~~vG~--~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~ 211 (381)
T COG3391 139 NNTVSVIDAATNKVTAT---IPVGN--TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAG 211 (381)
T ss_pred CceEEEEeCCCCeEEEE---EecCC--Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCce
Confidence 56677777766655431 11111 22 7889999998566666566666 55866543321 11 1222345566
Q ss_pred EEEeeccccCCCCEEEEEECC---CcEEEEECCCCeEEEE-EecCCCCCeeEEEEeeeCCCCCEEEEEeC-CCcEEEEeC
Q 000685 170 MEFLSRSAVGDVPLVAFGSSD---GVIRVLSMISWKLVRR-YTGGHKGSISCLMTFMASSGEALLVSGGS-DGLLILWSA 244 (1352)
Q Consensus 170 vaf~P~s~Spdg~~LasGs~D---GtIrIWDl~t~~~i~~-l~~gH~~~V~slawf~~s~dg~~LaSgS~-DGtVrVWDl 244 (1352)
+.+ ++++.++...... +.+...|..++..... ...+.. ....+. .+|+|..+..... .+.|.+-|.
T Consensus 212 i~v-----~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~---~~p~g~~~yv~~~~~~~V~vid~ 282 (381)
T COG3391 212 IAV-----DPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVA---VDPAGKAAYVANSQGGTVSVIDG 282 (381)
T ss_pred EEE-----CCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCcee---ECCCCCEEEEEecCCCeEEEEeC
Confidence 778 7789876655443 5899999998877665 221222 344444 7889998888744 488888888
Q ss_pred CCCCccc
Q 000685 245 DHGQDSR 251 (1352)
Q Consensus 245 ~tg~~~~ 251 (1352)
.+.....
T Consensus 283 ~~~~v~~ 289 (381)
T COG3391 283 ATDRVVK 289 (381)
T ss_pred CCCceee
Confidence 8766443
No 378
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=93.47 E-value=0.62 Score=59.80 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000685 1019 KEFLDLIDAADATGQANIAREALKRL 1044 (1352)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~A~~~~~~~ 1044 (1352)
..|++|+|.+..+|++..|.-||-|+
T Consensus 208 e~W~~ladls~~~~~i~qA~~cy~rA 233 (895)
T KOG2076|consen 208 ELWKRLADLSEQLGNINQARYCYSRA 233 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 79999999999999999999999998
No 379
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=93.40 E-value=25 Score=43.17 Aligned_cols=62 Identities=18% Similarity=0.180 Sum_probs=38.8
Q ss_pred CCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCc
Q 000685 180 DVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQD 249 (1352)
Q Consensus 180 dg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~ 249 (1352)
+....+....++.+.+.+-...+. + ...+++..|+ .||++++++.-..+|.+.+.+.+-.+.
T Consensus 189 ~~~~~i~~~~g~~i~~i~~~~~~~---i--~~~~~i~~ia---vSpng~~iAl~t~~g~l~v~ssDf~~~ 250 (410)
T PF04841_consen 189 DRVVEILLANGETIYIIDENSFKQ---I--DSDGPIIKIA---VSPNGKFIALFTDSGNLWVVSSDFSEK 250 (410)
T ss_pred CcceEEEEecCCEEEEEEcccccc---c--cCCCCeEEEE---ECCCCCEEEEEECCCCEEEEECcccce
Confidence 444444444555555443322111 1 2345788887 899999999999999998887654443
No 380
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=93.21 E-value=24 Score=42.46 Aligned_cols=186 Identities=12% Similarity=0.030 Sum_probs=84.3
Q ss_pred CCCeeeeeecCCCCeEEEEEecCcEE---EEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEE
Q 000685 120 TSGFASPPPSTKGRHFLVICCVNKAI---FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVL 196 (1352)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~D~~I---~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIW 196 (1352)
..+.+.=+|.++|+.+|..+..++.- .+|+.+++..++..... .......+ +++++.++....+..|+-.
T Consensus 35 ~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g--~~~~g~~~-----s~~~~~~~Yv~~~~~l~~v 107 (386)
T PF14583_consen 35 RLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPG--DNTFGGFL-----SPDDRALYYVKNGRSLRRV 107 (386)
T ss_dssp ---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS---B-TTT-EE------TTSSEEEEEETTTEEEEE
T ss_pred ceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCC--CCccceEE-----ecCCCeEEEEECCCeEEEE
Confidence 45566667899998777766645433 55999887655432221 11112334 5678888776677789999
Q ss_pred ECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCC----------------------CcEEEEeCCCCCccceec
Q 000685 197 SMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSD----------------------GLLILWSADHGQDSRELV 254 (1352)
Q Consensus 197 Dl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~D----------------------GtVrVWDl~tg~~~~~~~ 254 (1352)
|+.+.+....+. .....+-...|. .+.++..++-.-.. ..|.--|+.+|+..
T Consensus 108 dL~T~e~~~vy~-~p~~~~g~gt~v-~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~---- 181 (386)
T PF14583_consen 108 DLDTLEERVVYE-VPDDWKGYGTWV-ANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERK---- 181 (386)
T ss_dssp ETTT--EEEEEE---TTEEEEEEEE-E-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EE----
T ss_pred ECCcCcEEEEEE-CCccccccccee-eCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCcee----
Confidence 999986644443 455555545554 45566665533211 12344455555421
Q ss_pred ccccccccccceEEEEeeccCCCCCEEEEEEC---CCc-EEEEECCC-CeEEEEecCCCcccccCC--ceeEEEeCCCCC
Q 000685 255 PKLSLKAHDGGVVAVELSRVMGGSPQLITIGA---DKT-LAIWDTVS-FKELRRIKPVPKLACHSV--ASWCHPRAPNLD 327 (1352)
Q Consensus 255 ~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~---Dgt-V~IWDl~t-g~~l~~~~~~~~l~~hs~--~V~svafspdg~ 327 (1352)
++..-...+..+.|+|. +..+|+-|-. |.. -|||-+++ |...+.+ ..|.. .+..=-|.|||.
T Consensus 182 ---~v~~~~~wlgH~~fsP~--dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v------~~~~~~e~~gHEfw~~DG~ 250 (386)
T PF14583_consen 182 ---VVFEDTDWLGHVQFSPT--DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKV------HRRMEGESVGHEFWVPDGS 250 (386)
T ss_dssp ---EEEEESS-EEEEEEETT--EEEEEEEEE-S-TTTSS-SEEEEETTS---EES------S---TTEEEEEEEE-TTSS
T ss_pred ---EEEecCccccCcccCCC--CCCEEEEeccCCcceeceEEEEEEcCCCcceee------ecCCCCcccccccccCCCC
Confidence 12223456778999993 5455554432 321 25564432 3333332 11211 222334778887
Q ss_pred EE
Q 000685 328 IL 329 (1352)
Q Consensus 328 lL 329 (1352)
.|
T Consensus 251 ~i 252 (386)
T PF14583_consen 251 TI 252 (386)
T ss_dssp -E
T ss_pred EE
Confidence 44
No 381
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.14 E-value=0.36 Score=61.99 Aligned_cols=146 Identities=16% Similarity=0.131 Sum_probs=108.6
Q ss_pred cCCHHHHHHHHhhcChhhHHHHHHHHHhCCcchhhcccccccCccEEEeec--------ccccHHHHHHHHhhccccccc
Q 000685 914 YGDSVSAVKWASRLGREHHDDLAQFMLGMGYATEALHLPGISKRLEFDLAM--------QSNDLKRALQCLITMSNSRDI 985 (1352)
Q Consensus 914 ~~d~~~a~~~~~~i~~~~~~~~a~fl~~~G~~e~Al~~~~ds~~~kf~la~--------~~g~l~~a~~~~~~~~~~~~~ 985 (1352)
.-|--.+++++.+++.---+.||.---..+.+|||..+.. |||+-. ..++|++|.+.| ...
T Consensus 1033 kad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifk-----kf~~n~~A~~VLie~i~~ldRA~efA------e~~ 1101 (1666)
T KOG0985|consen 1033 KADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFK-----KFDMNVSAIQVLIENIGSLDRAYEFA------ERC 1101 (1666)
T ss_pred hcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHH-----HhcccHHHHHHHHHHhhhHHHHHHHH------Hhh
Confidence 3555677778888777666778877777788888877653 355432 258899999998 556
Q ss_pred CCCCCCCCccccccccccchhhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcccccccccchhhHHH
Q 000685 986 GQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALR 1065 (1352)
Q Consensus 986 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ll 1065 (1352)
+++ ..|.+|+.+-|.+|.+..|.+.|-|+.|-. .|....-.
T Consensus 1102 n~p------------------------------~vWsqlakAQL~~~~v~dAieSyikadDps---------~y~eVi~~ 1142 (1666)
T KOG0985|consen 1102 NEP------------------------------AVWSQLAKAQLQGGLVKDAIESYIKADDPS---------NYLEVIDV 1142 (1666)
T ss_pred CCh------------------------------HHHHHHHHHHHhcCchHHHHHHHHhcCCcH---------HHHHHHHH
Confidence 655 899999999999999999999999994322 55566678
Q ss_pred HhccCChhHHHHHHHHHHHcCCcH----HHHHHHHHcCCHHHHHHHHH
Q 000685 1066 LANHGELTRLSGLVTNLISLGLGR----EAAFSAAILGDNALMEKAWQ 1109 (1352)
Q Consensus 1066 ~~~~g~~~~l~~l~~~a~~~~~~~----~~af~~~~lgd~~~~~~~l~ 1109 (1352)
...+|+.+.|.+-.-||.++.+-. ..-|+.+-+|...+..+.+.
T Consensus 1143 a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~ 1190 (1666)
T KOG0985|consen 1143 ASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIA 1190 (1666)
T ss_pred HHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhc
Confidence 889999999999988998866421 33344446777776666553
No 382
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=92.91 E-value=0.77 Score=60.81 Aligned_cols=169 Identities=15% Similarity=0.060 Sum_probs=94.6
Q ss_pred hhhHHHhcCCHHHHHHHHhhc------ChhhHHHHHHHHHhCCcchhhcccccccCccEE----------EeecccccHH
Q 000685 907 RCRCLAAYGDSVSAVKWASRL------GREHHDDLAQFMLGMGYATEALHLPGISKRLEF----------DLAMQSNDLK 970 (1352)
Q Consensus 907 ~f~~~~~~~d~~~a~~~~~~i------~~~~~~~~a~fl~~~G~~e~Al~~~~ds~~~kf----------~la~~~g~l~ 970 (1352)
+-+....+|+++.|...+.+. ....+..++.-+..+|-.++|+........... .+....|+++
T Consensus 28 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~ 107 (899)
T TIGR02917 28 AAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQ 107 (899)
T ss_pred HHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHH
Confidence 334666778888888877661 223366777777788888887776433211111 1234567777
Q ss_pred HHHHHHhhcccccccCCCCCCCCccccccccccchhhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Q 000685 971 RALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSV 1050 (1352)
Q Consensus 971 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~ 1050 (1352)
.|++.+. +..... -......|..+|..+...|+++.|+++|+++-... +
T Consensus 108 ~a~~~~~------~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~ 156 (899)
T TIGR02917 108 QVLDELP------GKTLLD------------------------DEGAAELLALRGLAYLGLGQLELAQKSYEQALAID-P 156 (899)
T ss_pred HHHHhhc------ccccCC------------------------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C
Confidence 7777762 111000 00112566777888888888888888888764322 1
Q ss_pred ccccccccchhhHHHHhccCChhHHHHHHHHHHHcCCcHHHHHH----HH-HcCCHHHHHHHHH
Q 000685 1051 KGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFS----AA-ILGDNALMEKAWQ 1109 (1352)
Q Consensus 1051 ~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~~af~----~~-~lgd~~~~~~~l~ 1109 (1352)
.. ..-+-.|..+|...|+.+...++.+.+.........++. ++ ..|+.+++++.+.
T Consensus 157 ~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 217 (899)
T TIGR02917 157 RS---LYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYR 217 (899)
T ss_pred CC---hhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 11 112334556677777777777776666554322111111 11 4666666665554
No 383
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.71 E-value=3.6 Score=46.73 Aligned_cols=203 Identities=10% Similarity=0.046 Sum_probs=107.2
Q ss_pred EEcCCCCEEEEEeCC-----CcEEEEECCCC-cEEEEEeccCccceE-EeccccceeEeccccc-----CCCccccccCC
Q 000685 18 QLHPTHPWLVTADAS-----DHVSVWNWEHR-QVIYELKAGGVDQRR-LVGAKLEKLAEGELEH-----KGKPTEAMRGG 85 (1352)
Q Consensus 18 afSPdg~~LaTgs~D-----G~VrVWDl~tg-~~i~t~~~~~~~~i~-~vs~dg~~Lasgs~d~-----~g~~l~~l~~g 85 (1352)
.|||||.||...-.| |.|-|||...+ +.+.++..++...-. .+.+||+.++.....- -++.-..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lN---- 195 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELN---- 195 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccc----
Confidence 699999999876544 89999998754 556677765544433 3448898887653210 0110000
Q ss_pred ceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCc-----EEEEEe-eCC-cccccc
Q 000685 86 SVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNK-----AIFLDL-VTM-RGRDIP 158 (1352)
Q Consensus 86 ~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~-----~I~wDl-~t~-~~~~i~ 158 (1352)
+.-..-.+.+.|..++..+.+..-.... +...|+.++..+||. +.+.|...+ --.+-. ..+ ..+.+.
T Consensus 196 ----ldsMePSlvlld~atG~liekh~Lp~~l-~~lSiRHld~g~dgt-vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~ 269 (366)
T COG3490 196 ----LDSMEPSLVLLDAATGNLIEKHTLPASL-RQLSIRHLDIGRDGT-VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLD 269 (366)
T ss_pred ----hhhcCccEEEEeccccchhhhccCchhh-hhcceeeeeeCCCCc-EEEEEEeeCCCccCCcceeeccCCCcCcccC
Confidence 0002345666676666655321111111 134678888888886 444443221 111211 111 111110
Q ss_pred c----cccCCCCeEEEEEeeccccCCCCEEEEEE-CCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEE
Q 000685 159 K----QELDNKSLVCMEFLSRSAVGDVPLVAFGS-SDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSG 233 (1352)
Q Consensus 159 ~----~~~h~~~V~~vaf~P~s~Spdg~~LasGs-~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSg 233 (1352)
. ...-..+|-+|+. +.+..+++..+ ..+...+||..++..+..-. -.....+ -....-|+..
T Consensus 270 ~pee~~~~~anYigsiA~-----n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~---l~daaGv-----a~~~~gf~vs 336 (366)
T COG3490 270 LPEEQTAAFANYIGSIAA-----NRRDGLVALTSPRGNRAVIWDAATGAVVSEAA---LPDAAGV-----AAAKGGFAVS 336 (366)
T ss_pred CCHHHHHHHHhhhhheee-----cccCCeEEEecCCCCeEEEEEcCCCcEEeccc---ccccccc-----eeccCceEEe
Confidence 0 0111457888888 33444555444 55667899999998875432 1111122 1233445566
Q ss_pred eCCCcEEEEe
Q 000685 234 GSDGLLILWS 243 (1352)
Q Consensus 234 S~DGtVrVWD 243 (1352)
+.+|.+.++.
T Consensus 337 sg~G~~~~~s 346 (366)
T COG3490 337 SGQGRIIFYS 346 (366)
T ss_pred cCCceEEecc
Confidence 7788888774
No 384
>PHA02713 hypothetical protein; Provisional
Probab=92.58 E-value=7.9 Score=49.49 Aligned_cols=146 Identities=7% Similarity=0.050 Sum_probs=76.8
Q ss_pred CCCeEEEEEecCcE-----E-EEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCC-------------
Q 000685 131 KGRHFLVICCVNKA-----I-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDG------------- 191 (1352)
Q Consensus 131 dg~~lLasgs~D~~-----I-~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DG------------- 191 (1352)
+++ +.+.|+.++. + ++|..+.+-..+............+.+ ++.+.+.|+.++
T Consensus 351 ~g~-IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~-------~g~IYviGG~~~~~~~~~~~~~~~~ 422 (557)
T PHA02713 351 DDT-IYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL-------DQYIYIIGGRTEHIDYTSVHHMNSI 422 (557)
T ss_pred CCE-EEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE-------CCEEEEEeCCCcccccccccccccc
Confidence 454 6677765431 2 557766543333222222222223334 677777777542
Q ss_pred ----------cEEEEECCCCeEE--EEEecCCCCCeeEEEEeeeCCCCCEEEEEeCC------CcEEEEeCCC-CCccce
Q 000685 192 ----------VIRVLSMISWKLV--RRYTGGHKGSISCLMTFMASSGEALLVSGGSD------GLLILWSADH-GQDSRE 252 (1352)
Q Consensus 192 ----------tIrIWDl~t~~~i--~~l~~gH~~~V~slawf~~s~dg~~LaSgS~D------GtVrVWDl~t-g~~~~~ 252 (1352)
++..||..+.+.. ..+..+... .+++ .-++.+.+.|+.+ ..|..||..+ .+...
T Consensus 423 ~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~--~~~~----~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~- 495 (557)
T PHA02713 423 DMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR--PGVV----SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWEL- 495 (557)
T ss_pred cccccccccceEEEECCCCCeEeecCCCCccccc--CcEE----EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeE-
Confidence 4778888765442 222111111 1222 2257777777764 2467899887 44321
Q ss_pred ecccccccccccceEEEEeeccCCCCCEEEEEECCC--cEEEEECCCCe
Q 000685 253 LVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADK--TLAIWDTVSFK 299 (1352)
Q Consensus 253 ~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~Dg--tV~IWDl~tg~ 299 (1352)
...+.........+.+ ++.+.+.||.|+ ++..||..+.+
T Consensus 496 ---~~~m~~~r~~~~~~~~-----~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 496 ---ITTTESRLSALHTILH-----DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred ---ccccCcccccceeEEE-----CCEEEEEeeecceeehhhcCccccc
Confidence 1223323333333333 578999999888 67777776554
No 385
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=92.57 E-value=0.25 Score=54.32 Aligned_cols=69 Identities=16% Similarity=0.095 Sum_probs=44.9
Q ss_pred CCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccc
Q 000685 181 VPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSR 251 (1352)
Q Consensus 181 g~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~ 251 (1352)
+.-+++|+.+|.|.+|++.-..........-...|.++- ..-.++.+..+++.||.||.|++.-++.+.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I--p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g 138 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI--PNGRDSSLGCVGAQDGRIRACNIKPNKVLG 138 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceecc--ccccccceeEEeccCCceeeeccccCceee
Confidence 567999999999999998732111111112233444441 233455689999999999999998766443
No 386
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.50 E-value=0.36 Score=62.59 Aligned_cols=106 Identities=18% Similarity=0.292 Sum_probs=73.5
Q ss_pred CCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccc
Q 000685 180 DVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSL 259 (1352)
Q Consensus 180 dg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l 259 (1352)
.+.+++.|++.|.+-..|+...-........-.++|++++ ++.+|.+++.|-.+|.|.+||+..++..+. +
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsva---fn~dg~~l~~G~~~G~V~v~D~~~~k~l~~------i 168 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVA---FNQDGSLLLAGLGDGHVTVWDMHRAKILKV------I 168 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeE---ecCCCceeccccCCCcEEEEEccCCcceee------e
Confidence 4667999999999999998754111111113467999998 899999999999999999999999886654 3
Q ss_pred cccccceEEEEeeccCCCCCEEEEEECCCcEEEEECC
Q 000685 260 KAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV 296 (1352)
Q Consensus 260 ~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~ 296 (1352)
..|..+++++-++-...++..++++..-|. +|.+.
T Consensus 169 ~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 169 TEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred eecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 445555444444332224556777766665 66643
No 387
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=92.44 E-value=6.8 Score=48.21 Aligned_cols=134 Identities=15% Similarity=0.113 Sum_probs=78.6
Q ss_pred eEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEE-EE--EeeCCccccccccccCCCCeEEEEE
Q 000685 96 DVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FL--DLVTMRGRDIPKQELDNKSLVCMEF 172 (1352)
Q Consensus 96 ~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I-~w--Dl~t~~~~~i~~~~~h~~~V~~vaf 172 (1352)
.+.++++.+++... .......-....|+|||+.++.+...|+.. +| |+.+.....+ .+...+.+
T Consensus 219 ~i~~~~l~~g~~~~------i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~L----t~~~gi~~--- 285 (425)
T COG0823 219 RIYYLDLNTGKRPV------ILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRL----TNGFGINT--- 285 (425)
T ss_pred eEEEEeccCCccce------eeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceec----ccCCcccc---
Confidence 58888888875532 111133345567999999777777777766 33 7766553221 22233333
Q ss_pred eeccccCCCCEEEEEECC-C--cEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCC-Cc--EEEEeCCC
Q 000685 173 LSRSAVGDVPLVAFGSSD-G--VIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSD-GL--LILWSADH 246 (1352)
Q Consensus 173 ~P~s~Spdg~~LasGs~D-G--tIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~D-Gt--VrVWDl~t 246 (1352)
+| +++|||++|+..++. | .|.+.|++.....+... .-.... +-. .+|+|++|+..+.. |. |.+.|+.+
T Consensus 286 ~P-s~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~-~~~~~~-~p~---~SpdG~~i~~~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 286 SP-SWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF-SGGGNS-NPV---WSPDGDKIVFESSSGGQWDIDKNDLAS 359 (425)
T ss_pred Cc-cCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec-cCCCCc-Ccc---CCCCCCEEEEEeccCCceeeEEeccCC
Confidence 22 248999999888754 3 46667777665533222 222222 332 68999999887753 44 55555555
Q ss_pred CC
Q 000685 247 GQ 248 (1352)
Q Consensus 247 g~ 248 (1352)
+.
T Consensus 360 ~~ 361 (425)
T COG0823 360 GG 361 (425)
T ss_pred CC
Confidence 44
No 388
>PLN03077 Protein ECB2; Provisional
Probab=92.20 E-value=2.1 Score=57.57 Aligned_cols=195 Identities=12% Similarity=0.040 Sum_probs=105.6
Q ss_pred HHhcCCHHHHHHHHhhcChhh---HHHHHHHHHhCCcchhhcccccccCccE-------E----EeecccccHHHHHHHH
Q 000685 911 LAAYGDSVSAVKWASRLGREH---HDDLAQFMLGMGYATEALHLPGISKRLE-------F----DLAMQSNDLKRALQCL 976 (1352)
Q Consensus 911 ~~~~~d~~~a~~~~~~i~~~~---~~~~a~fl~~~G~~e~Al~~~~ds~~~k-------f----~la~~~g~l~~a~~~~ 976 (1352)
....|++++|.+++..+.+.. ++.++.-+...|..++|+.+... -... | .-+-.+|+++.+.++-
T Consensus 434 y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~-m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~ 512 (857)
T PLN03077 434 YSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQ-MLLTLKPNSVTLIAALSACARIGALMCGKEIH 512 (857)
T ss_pred HHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHH-HHhCCCCCHhHHHHHHHHHhhhchHHHhHHHH
Confidence 344588888888877754322 56677777777888877776543 1110 0 0122345555555554
Q ss_pred hhcccccccCCCCCCCCccccccccccchhhhhhhhh---hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcccc
Q 000685 977 ITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQG---IVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGA 1053 (1352)
Q Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~~~~ 1053 (1352)
.++... +...+..-.|-|+.+-.|..++.++..- +..+..-|..|.......|+.+.|.+.|++..+.|-.
T Consensus 513 ~~~~~~---g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~--- 586 (857)
T PLN03077 513 AHVLRT---GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN--- 586 (857)
T ss_pred HHHHHh---CCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---
Confidence 333221 1010111112233333333333332211 1223467999999999999999999999988654311
Q ss_pred cccccchhhHHHHhccCChhHHHHHHHHHH-HcCCcHH-HHHHHH-----HcCCHHHHHHHHHHcC
Q 000685 1054 LQGHELRGLALRLANHGELTRLSGLVTNLI-SLGLGRE-AAFSAA-----ILGDNALMEKAWQDTG 1112 (1352)
Q Consensus 1054 ~~~~~~~~l~ll~~~~g~~~~l~~l~~~a~-~~~~~~~-~af~~~-----~lgd~~~~~~~l~~~~ 1112 (1352)
-...-|..|+--|+..|..+.-.++.+.+. ..|-.-+ ..|.++ -.|+.+++.+++.+..
T Consensus 587 Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 587 PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred CCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 011234556566777899988888888777 4442212 223322 4455555555555443
No 389
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.20 E-value=0.47 Score=58.58 Aligned_cols=91 Identities=14% Similarity=0.096 Sum_probs=65.4
Q ss_pred CCCeeeeeecCCCCeEEEEEecCcEEEE-EeeCCccccccccccCCCCeE-EEEEeeccccCCCCEEEEEECCCcEEEEE
Q 000685 120 TSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDNKSLV-CMEFLSRSAVGDVPLVAFGSSDGVIRVLS 197 (1352)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~D~~I~w-Dl~t~~~~~i~~~~~h~~~V~-~vaf~P~s~Spdg~~LasGs~DGtIrIWD 197 (1352)
...+.-+.|+|..+ ++|.+..+|-+.+ -.+..+ +-+...++..++ +++| .|||++|++|-.||+|++.|
T Consensus 20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n~qR---lwtip~p~~~v~~sL~W-----~~DGkllaVg~kdG~I~L~D 90 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLNWQR---LWTIPIPGENVTASLCW-----RPDGKLLAVGFKDGTIRLHD 90 (665)
T ss_pred ccceEEEEEcCccc-hhheeccCCcEEEEEeccce---eEeccCCCCccceeeee-----cCCCCEEEEEecCCeEEEEE
Confidence 34577889999987 9999988885543 333322 333444666666 9999 77999999999999999999
Q ss_pred CCCCeEEEEEecCCCCCeeEEE
Q 000685 198 MISWKLVRRYTGGHKGSISCLM 219 (1352)
Q Consensus 198 l~t~~~i~~l~~gH~~~V~sla 219 (1352)
..++..+....-.-...|.++-
T Consensus 91 ve~~~~l~~~~~s~e~~is~~~ 112 (665)
T KOG4640|consen 91 VEKGGRLVSFLFSVETDISKGI 112 (665)
T ss_pred ccCCCceeccccccccchheee
Confidence 9998777653223344555554
No 390
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=92.12 E-value=9.5 Score=45.05 Aligned_cols=56 Identities=25% Similarity=0.306 Sum_probs=39.9
Q ss_pred cEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCC-EEEEE-eCCCcEEEEeCCCCCccce
Q 000685 192 VIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEA-LLVSG-GSDGLLILWSADHGQDSRE 252 (1352)
Q Consensus 192 tIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~-~LaSg-S~DGtVrVWDl~tg~~~~~ 252 (1352)
.|-++|+.+++.+.++.- ...+.+|. .+.+.+ +|++. ..++.+.+||..+|+.+++
T Consensus 270 eVWv~D~~t~krv~Ri~l--~~~~~Si~---Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPL--EHPIDSIA---VSQDDKPLLYALSAGDGTLDVYDAATGKLVRS 327 (342)
T ss_dssp EEEEEETTTTEEEEEEEE--EEEESEEE---EESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred EEEEEECCCCeEEEEEeC--CCccceEE---EccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence 477889999999998862 34577776 455544 55544 4589999999999987665
No 391
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=92.12 E-value=35 Score=41.61 Aligned_cols=257 Identities=13% Similarity=0.127 Sum_probs=118.9
Q ss_pred CEEEEEEcCCCCEEEEE-eCCC----cEEEEECCCCcEEEEE-eccCccceEEeccccceeEecccccCCCccccccCCc
Q 000685 13 KIVKIQLHPTHPWLVTA-DASD----HVSVWNWEHRQVIYEL-KAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGS 86 (1352)
Q Consensus 13 ~V~~lafSPdg~~LaTg-s~DG----~VrVWDl~tg~~i~t~-~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~ 86 (1352)
.+....+||+|++||-+ +..| +|+++|+.+|+.+... ....... ..-.++++.+.-...+...... ...
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~-~~W~~d~~~~~y~~~~~~~~~~----~~~ 199 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSS-VSWSDDGKGFFYTRFDEDQRTS----DSG 199 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEE-EEECTTSSEEEEEECSTTTSS-----CCG
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccce-EEEeCCCCEEEEEEeCcccccc----cCC
Confidence 34468899999988855 3444 5999999999876543 2111111 1112555554433322211100 000
Q ss_pred eEEEEEcCCeEEEEEcCCccccccccccccccCCCC-eeeeeecCCCCeEEEEEecCcE---E-EEEeeCC--ccccccc
Q 000685 87 VKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSG-FASPPPSTKGRHFLVICCVNKA---I-FLDLVTM--RGRDIPK 159 (1352)
Q Consensus 87 V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~-V~slafspdg~~lLasgs~D~~---I-~wDl~t~--~~~~i~~ 159 (1352)
....|..|++.+...-- ........... ...+..+++++.+++....... + .+|.... .......
T Consensus 200 ------~~~~v~~~~~gt~~~~d--~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~ 271 (414)
T PF02897_consen 200 ------YPRQVYRHKLGTPQSED--ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKL 271 (414)
T ss_dssp ------CCEEEEEEETTS-GGG---EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEE
T ss_pred ------CCcEEEEEECCCChHhC--eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEE
Confidence 14457777776653320 01111211222 5678889999855554443332 3 3376654 0011111
Q ss_pred cccCCCCe-EEEEEeeccccCCCCEEEEEE---CCCcEEEEECCCCe---EEEEEecCCCC--CeeEEEEeeeCCCCCEE
Q 000685 160 QELDNKSL-VCMEFLSRSAVGDVPLVAFGS---SDGVIRVLSMISWK---LVRRYTGGHKG--SISCLMTFMASSGEALL 230 (1352)
Q Consensus 160 ~~~h~~~V-~~vaf~P~s~Spdg~~LasGs---~DGtIrIWDl~t~~---~i~~l~~gH~~--~V~slawf~~s~dg~~L 230 (1352)
.......+ ..+.. ..+.+++... .++.|.-.++.+.. ....+. .|.. .+..+.. -.+.++
T Consensus 272 l~~~~~~~~~~v~~------~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~-~~~~~~~l~~~~~----~~~~Lv 340 (414)
T PF02897_consen 272 LSPREDGVEYYVDH------HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI-PEDEDVSLEDVSL----FKDYLV 340 (414)
T ss_dssp EEESSSS-EEEEEE------ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEE----ETTEEE
T ss_pred EeCCCCceEEEEEc------cCCEEEEeeCCCCCCcEEEEecccccccccceeEEc-CCCCceeEEEEEE----ECCEEE
Confidence 22223333 33433 1233333332 23567677777553 222333 4544 4544431 134455
Q ss_pred EEEeCCC--cEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEEC---CCcEEEEECCCCeE
Q 000685 231 VSGGSDG--LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA---DKTLAIWDTVSFKE 300 (1352)
Q Consensus 231 aSgS~DG--tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~---DgtV~IWDl~tg~~ 300 (1352)
++-..++ .|+++++..+..... ..+.. .+.|..+...+ ....+.++.+. -.++..||+.+++.
T Consensus 341 l~~~~~~~~~l~v~~~~~~~~~~~----~~~p~-~g~v~~~~~~~--~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 341 LSYRENGSSRLRVYDLDDGKESRE----IPLPE-AGSVSGVSGDF--DSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEETTEEEEEEEETT-TEEEEE----EESSS-SSEEEEEES-T--T-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EEEEECCccEEEEEECCCCcEEee----ecCCc-ceEEeccCCCC--CCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 5555554 477888882222221 11221 23355555544 23444444443 46788889888774
No 392
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=91.88 E-value=2.5 Score=50.81 Aligned_cols=171 Identities=18% Similarity=0.103 Sum_probs=105.9
Q ss_pred HHHhcCCHHHHHHHHhhc---Ch-------hhHHHHHHHHHhCCcchhhcccccccCcc----------EEEeecccccH
Q 000685 910 CLAAYGDSVSAVKWASRL---GR-------EHHDDLAQFMLGMGYATEALHLPGISKRL----------EFDLAMQSNDL 969 (1352)
Q Consensus 910 ~~~~~~d~~~a~~~~~~i---~~-------~~~~~~a~fl~~~G~~e~Al~~~~ds~~~----------kf~la~~~g~l 969 (1352)
.....|+++.|++++..+ +. ..+..++.-+..+|..+.|+.+....... .-.+..+.|++
T Consensus 78 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~ 157 (389)
T PRK11788 78 LFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDW 157 (389)
T ss_pred HHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchH
Confidence 456679999999887662 11 22456688888889988887765432110 01244677888
Q ss_pred HHHHHHHhhcccccccCCCCCCCCccccccccccchhhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 000685 970 KRALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGS 1049 (1352)
Q Consensus 970 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~ 1049 (1352)
+.|.++...+..... . + .-......|..||...+.+|+++.|+++|+++-...
T Consensus 158 ~~A~~~~~~~~~~~~---~-----------------~------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 210 (389)
T PRK11788 158 QKAIDVAERLEKLGG---D-----------------S------LRVEIAHFYCELAQQALARGDLDAARALLKKALAAD- 210 (389)
T ss_pred HHHHHHHHHHHHhcC---C-----------------c------chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-
Confidence 888888744322100 0 0 000112457789999999999999999999874321
Q ss_pred cccccccccchhhHHHHhccCChhHHHHHHHHHHHcCCcHHH--HH----HHH-HcCCHHHHHHHHHHc
Q 000685 1050 VKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREA--AF----SAA-ILGDNALMEKAWQDT 1111 (1352)
Q Consensus 1050 ~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~~--af----~~~-~lgd~~~~~~~l~~~ 1111 (1352)
+. ...-+..|..+|...|+.++..++.+.+...+.. +. ++ .++ .+|+.+++++.+.+.
T Consensus 211 p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 211 PQ---CVRASILLGDLALAQGDYAAAIEALERVEEQDPE-YLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred cC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh-hHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 10 0111223456888899998888888887765422 21 11 122 678888888877653
No 393
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=91.83 E-value=56 Score=43.28 Aligned_cols=141 Identities=11% Similarity=0.097 Sum_probs=91.3
Q ss_pred CCEEEEEEC----------CCcEEEEECCCCeEEEEEe-cCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCc
Q 000685 181 VPLVAFGSS----------DGVIRVLSMISWKLVRRYT-GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQD 249 (1352)
Q Consensus 181 g~~LasGs~----------DGtIrIWDl~t~~~i~~l~-~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~ 249 (1352)
+.++++|+. .|.|.+|.+...+.++... ..-.+.+.++.-| +|+++| +-...|++|++.+.+.
T Consensus 787 ~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f----ngkllA--~In~~vrLye~t~~~e 860 (1096)
T KOG1897|consen 787 NTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF----NGKLLA--GINQSVRLYEWTTERE 860 (1096)
T ss_pred ceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh----CCeEEE--ecCcEEEEEEccccce
Confidence 678888863 4778888877633333321 1235667777533 666666 4667999999988865
Q ss_pred cceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEE--ECCCCeEEEEecCCCcccccCCceeEEEeCCCCC
Q 000685 250 SRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIW--DTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD 327 (1352)
Q Consensus 250 ~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IW--Dl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~ 327 (1352)
++. -..|..++..+...- .++.++.|..=+++.+. +...|.....- -..|..+.+++.+-.+..
T Consensus 861 Lr~------e~~~~~~~~aL~l~v---~gdeI~VgDlm~Sitll~y~~~eg~f~evA-----rD~~p~Wmtaveil~~d~ 926 (1096)
T KOG1897|consen 861 LRI------ECNISNPIIALDLQV---KGDEIAVGDLMRSITLLQYKGDEGNFEEVA-----RDYNPNWMTAVEILDDDT 926 (1096)
T ss_pred ehh------hhcccCCeEEEEEEe---cCcEEEEeeccceEEEEEEeccCCceEEee-----hhhCccceeeEEEecCce
Confidence 543 255677788888877 68899999887877664 44444333221 245667777777776666
Q ss_pred EEEEecCCeEEecc
Q 000685 328 ILTCVKDSHIWAIE 341 (1352)
Q Consensus 328 lLS~s~Dg~IWDi~ 341 (1352)
++.+-.+|.++-++
T Consensus 927 ylgae~~gNlf~v~ 940 (1096)
T KOG1897|consen 927 YLGAENSGNLFTVR 940 (1096)
T ss_pred EEeecccccEEEEE
Confidence 77666666655443
No 394
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=91.75 E-value=0.38 Score=40.12 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=31.2
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Q 000685 10 TNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVI 46 (1352)
Q Consensus 10 Hs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i 46 (1352)
-.+.|.+++|+|+..+||.|..+|.|.|+.+ +++.+
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 3467999999999999999999999999998 55543
No 395
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=91.73 E-value=9.1 Score=48.67 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=16.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 000685 1025 IDAADATGQANIAREALKRLAA 1046 (1352)
Q Consensus 1025 ~~~al~~g~~~~A~~~~~~~~~ 1046 (1352)
+..-.-.++.+-|-+||.-+++
T Consensus 372 ~rledir~emDd~~~~f~lL~n 393 (1102)
T KOG1924|consen 372 GRLEDIRAEMDDANEVFELLAN 393 (1102)
T ss_pred hHHHhhhhhhccHHHHHHHHHH
Confidence 4444556888999999998853
No 396
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=91.50 E-value=1.6 Score=56.49 Aligned_cols=91 Identities=8% Similarity=-0.007 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccccccccc----chhhHHHHhccCChhHHHHHHHHHHHcCCcHHHHHH
Q 000685 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHE----LRGLALRLANHGELTRLSGLVTNLISLGLGREAAFS 1094 (1352)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~~af~ 1094 (1352)
.-|..+|.....+|+++.|+++|+++-....-..... .. +.....+|...|+.++...+.+.|....-....++.
T Consensus 468 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~-~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~ 546 (615)
T TIGR00990 468 DVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMY-MNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVA 546 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccccc-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 5677778888888888888888887633210000000 00 011112333457777777776666554322122222
Q ss_pred -----HHHcCCHHHHHHHHHH
Q 000685 1095 -----AAILGDNALMEKAWQD 1110 (1352)
Q Consensus 1095 -----~~~lgd~~~~~~~l~~ 1110 (1352)
.+.+|+++++++++.+
T Consensus 547 ~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 547 TMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred HHHHHHHHccCHHHHHHHHHH
Confidence 1166777777776654
No 397
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.40 E-value=18 Score=47.55 Aligned_cols=79 Identities=11% Similarity=0.130 Sum_probs=53.9
Q ss_pred CCCeeeeeecCCCCeEEEEEecCcEEEEEeeC----------Cc----ccccccc-----ccCCCCeEEEEEeeccccCC
Q 000685 120 TSGFASPPPSTKGRHFLVICCVNKAIFLDLVT----------MR----GRDIPKQ-----ELDNKSLVCMEFLSRSAVGD 180 (1352)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~D~~I~wDl~t----------~~----~~~i~~~-----~~h~~~V~~vaf~P~s~Spd 180 (1352)
...|..+.++++|+ +++..+..++.++.+.. ++ |+.+... ..+...|..+.|||. +.+
T Consensus 84 ~f~v~~i~~n~~g~-~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~--s~~ 160 (717)
T PF10168_consen 84 LFEVHQISLNPTGS-LLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPW--SES 160 (717)
T ss_pred ceeEEEEEECCCCC-EEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCC--CCC
Confidence 34688899999998 66666667776553321 11 1111110 123458899999996 567
Q ss_pred CCEEEEEECCCcEEEEECCCC
Q 000685 181 VPLVAFGSSDGVIRVLSMISW 201 (1352)
Q Consensus 181 g~~LasGs~DGtIrIWDl~t~ 201 (1352)
+..|+.=+.|+++|+||+...
T Consensus 161 ~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCeEEEEecCCEEEEEecCCC
Confidence 889999999999999999753
No 398
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=91.39 E-value=51 Score=41.95 Aligned_cols=58 Identities=14% Similarity=0.095 Sum_probs=38.7
Q ss_pred cEEEEECCCCeEEEEEecCCCCCeeEE------EEeeeCCCCC---EEEEEeCCCcEEEEeCCCCCcc
Q 000685 192 VIRVLSMISWKLVRRYTGGHKGSISCL------MTFMASSGEA---LLVSGGSDGLLILWSADHGQDS 250 (1352)
Q Consensus 192 tIrIWDl~t~~~i~~l~~gH~~~V~sl------awf~~s~dg~---~LaSgS~DGtVrVWDl~tg~~~ 250 (1352)
+|.-.|++|++..-.+...| +.+... ..+....+|+ .++.+..+|.+.+.|-.+|+.+
T Consensus 272 s~vAld~~TG~~~W~~Q~~~-~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTP-HDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eEEEEccccCCEEEeeeCCC-CCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 67778999998877665222 211111 1112334665 7889999999999999999875
No 399
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.29 E-value=12 Score=41.70 Aligned_cols=88 Identities=10% Similarity=-0.050 Sum_probs=56.1
Q ss_pred CCEEEEEeCCCcEEEEe--CCCCCccceecccccccc---c-ccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeE
Q 000685 227 EALLVSGGSDGLLILWS--ADHGQDSRELVPKLSLKA---H-DGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKE 300 (1352)
Q Consensus 227 g~~LaSgS~DGtVrVWD--l~tg~~~~~~~~~~~l~g---H-~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~ 300 (1352)
..+-++-+.+-+|.-|| ..+|..... ...+.++. . .-..-.++... +|.+.++.-..++|...|..+|+.
T Consensus 170 K~fY~iDsln~~V~a~dyd~~tG~~snr-~~i~dlrk~~~~e~~~PDGm~ID~---eG~L~Va~~ng~~V~~~dp~tGK~ 245 (310)
T KOG4499|consen 170 KKFYYIDSLNYEVDAYDYDCPTGDLSNR-KVIFDLRKSQPFESLEPDGMTIDT---EGNLYVATFNGGTVQKVDPTTGKI 245 (310)
T ss_pred cEEEEEccCceEEeeeecCCCcccccCc-ceeEEeccCCCcCCCCCCcceEcc---CCcEEEEEecCcEEEEECCCCCcE
Confidence 34556677888898888 555554321 11111111 0 01122344443 688999999999999999999999
Q ss_pred EEEecCCCcccccCCceeEEEeCC
Q 000685 301 LRRIKPVPKLACHSVASWCHPRAP 324 (1352)
Q Consensus 301 l~~~~~~~~l~~hs~~V~svafsp 324 (1352)
+..++. .+..|+|++|--
T Consensus 246 L~eikl------Pt~qitsccFgG 263 (310)
T KOG4499|consen 246 LLEIKL------PTPQITSCCFGG 263 (310)
T ss_pred EEEEEc------CCCceEEEEecC
Confidence 998642 366788888864
No 400
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=91.23 E-value=1.9 Score=57.09 Aligned_cols=166 Identities=14% Similarity=-0.022 Sum_probs=99.3
Q ss_pred HHHhcCCHHHHHHHHhhc------ChhhHHHHHHHHHhCCcchhhccccccc----Cc------cEEEeecccccHHHHH
Q 000685 910 CLAAYGDSVSAVKWASRL------GREHHDDLAQFMLGMGYATEALHLPGIS----KR------LEFDLAMQSNDLKRAL 973 (1352)
Q Consensus 910 ~~~~~~d~~~a~~~~~~i------~~~~~~~~a~fl~~~G~~e~Al~~~~ds----~~------~kf~la~~~g~l~~a~ 973 (1352)
+....|++++|.+++... ....+..++..+..+|..++|+.+.... |+ ....+..+.|+++.|.
T Consensus 610 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 689 (899)
T TIGR02917 610 AQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAK 689 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 344557777777766551 1223567777777777777777664321 11 1122345567777777
Q ss_pred HHHhhcccccccCCCCCCCCccccccccccchhhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcccc
Q 000685 974 QCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGA 1053 (1352)
Q Consensus 974 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~~~~ 1053 (1352)
+++..+..... .....|..+|......|+++.|.++|+++-....- .
T Consensus 690 ~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~- 736 (899)
T TIGR02917 690 KIAKSLQKQHP-------------------------------KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS-S- 736 (899)
T ss_pred HHHHHHHhhCc-------------------------------CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-c-
Confidence 77633322210 01256788899999999999999999887432210 0
Q ss_pred cccccchhhHHHHhccCChhHHHHHHHHHHHcCCcHHHHHH-----HHHcCCHHHHHHHHHHc
Q 000685 1054 LQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFS-----AAILGDNALMEKAWQDT 1111 (1352)
Q Consensus 1054 ~~~~~~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~~af~-----~~~lgd~~~~~~~l~~~ 1111 (1352)
..+..+..+|...|+.+...++...+.........++. ...+|+.++++++|.+.
T Consensus 737 ---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 737 ---QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred ---hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 12344566778888888887777776665433121222 11578888888887653
No 401
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.21 E-value=7.6 Score=47.43 Aligned_cols=268 Identities=13% Similarity=0.107 Sum_probs=0.0
Q ss_pred eeeecCCCCeEEEEEecCcEEEE-----------EeeCCccccccccccCC-CCeEEEEEee-cccc-----CCCCEEEE
Q 000685 125 SPPPSTKGRHFLVICCVNKAIFL-----------DLVTMRGRDIPKQELDN-KSLVCMEFLS-RSAV-----GDVPLVAF 186 (1352)
Q Consensus 125 slafspdg~~lLasgs~D~~I~w-----------Dl~t~~~~~i~~~~~h~-~~V~~vaf~P-~s~S-----pdg~~Las 186 (1352)
.++.+|+++ +++.+..+..+++ +..+............. ..|+++.|.| .+.. +|...|+.
T Consensus 6 ~isls~~~d-~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~V 84 (415)
T PF14655_consen 6 SISLSPDGD-LLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAV 84 (415)
T ss_pred eEEecCCCC-EEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEE
Q ss_pred EECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCC------------------------------------CEE
Q 000685 187 GSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGE------------------------------------ALL 230 (1352)
Q Consensus 187 Gs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg------------------------------------~~L 230 (1352)
|..+|.|++|. ++|.++..-. -|..+|..+. ..... +.+
T Consensus 85 G~ssG~vrfyt-e~G~LL~~Q~-~h~~pV~~ik---~~~~~~~~~~~~~~eel~ily~~~v~~Idg~sL~~~L~~~~~~~ 159 (415)
T PF14655_consen 85 GTSSGYVRFYT-ENGVLLLSQL-LHEEPVLKIK---CRSTKIPRHPGDSSEELSILYPSAVVIIDGFSLFSVLRACRNQV 159 (415)
T ss_pred EecccEEEEEe-ccchHHHHHh-cCccceEEEE---ecccCCCCCCcccccEEEEEECCEEEEEecHHHHHHHHHHHHhh
Q ss_pred EEEeCCC---------cEEEEeCCCCCccceecccccccccccceE----------EEEeeccCCCCCEEEEEECCCcEE
Q 000685 231 VSGGSDG---------LLILWSADHGQDSRELVPKLSLKAHDGGVV----------AVELSRVMGGSPQLITIGADKTLA 291 (1352)
Q Consensus 231 aSgS~DG---------tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~----------slafsp~~~dg~~LaSgs~DgtV~ 291 (1352)
..+..++ ..+.|.+.....+......-......-.-. .+.-++ .....++++|.+-.+-
T Consensus 160 ~~~~~~~~~~~~~~~L~ykKw~l~~~~~i~D~~~~G~~~~~~fd~l~~aS~~gf~a~~~~s~--~~~~~~i~~G~~P~v~ 237 (415)
T PF14655_consen 160 ARGAASGSDSPAPPPLSYKKWNLQSQDTINDAAICGPMPPSTFDHLVTASIGGFNAKYRSSP--PRMSRYITVGSSPFVS 237 (415)
T ss_pred hhhhhcccccCCCCccceeEecCCCCCcEeeEEEecCCCCcHHHHHHhhhcccccceeecCC--cceEEEEEecCCceEE
Q ss_pred EEECCCCeEEEEecC-----------------------------------------------CCcccccCCceeEEEeCC
Q 000685 292 IWDTVSFKELRRIKP-----------------------------------------------VPKLACHSVASWCHPRAP 324 (1352)
Q Consensus 292 IWDl~tg~~l~~~~~-----------------------------------------------~~~l~~hs~~V~svafsp 324 (1352)
+|-...+..-..+.. ...+......+.++..+|
T Consensus 238 f~~~~e~~s~~~ls~va~~aVas~l~sav~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~l~D~~R~~~~i~~sP 317 (415)
T PF14655_consen 238 FYYASEGSSQPLLSDVASSAVASKLTSAVSGWLGWGSWRSEQQPQEKQPPEPKPEPAAPLPMRFGLPDSKREGESICLSP 317 (415)
T ss_pred EEEccCCCCcccHHHHHHHHHHHHHHhhhHhhcccCCCCCccccccccccccCcCCCcccceEEeeccCCceEEEEEECC
Q ss_pred CCCEEEEecC-Ce--EEeccCCcccccccCccccCCCCCCeEEecCCcccEEEEEEecCCCc-----------------E
Q 000685 325 NLDILTCVKD-SH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPH-----------------L 384 (1352)
Q Consensus 325 dg~lLS~s~D-g~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~V~~la~sp~~~~-----------------l 384 (1352)
++.+++.+.+ |+ |+|+.++.. +..+++..+-.+.-+........ +
T Consensus 318 ~~~laA~tDslGRV~LiD~~~~~v---------------vrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 318 SGRLAAVTDSLGRVLLIDVARGIV---------------VRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred CCCEEEEEcCCCcEEEEECCCChh---------------hhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Q ss_pred EEEEECCCeEEEEecCCCCCCccccCCCCCCC
Q 000685 385 VATGTNVGVIISEFDPRSLPAVAPLPTPSGSR 416 (1352)
Q Consensus 385 LatGs~DG~IlriWd~~~~p~i~~l~~~s~s~ 416 (1352)
++-.-.-|.| .+|.++..+.+..+....+.+
T Consensus 383 vIyaprRg~l-EvW~~~~g~Rv~a~~v~k~~r 413 (415)
T PF14655_consen 383 VIYAPRRGIL-EVWSMRQGPRVAAFNVGKGCR 413 (415)
T ss_pred EEEeccCCeE-EEEecCCCCEEEEEEeCCCcE
No 402
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.09 E-value=1.9 Score=52.44 Aligned_cols=100 Identities=14% Similarity=0.147 Sum_probs=66.2
Q ss_pred EEEEEecCcEEEEEeeCCccccccccccC----CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecC
Q 000685 135 FLVICCVNKAIFLDLVTMRGRDIPKQELD----NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGG 210 (1352)
Q Consensus 135 lLasgs~D~~I~wDl~t~~~~~i~~~~~h----~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~g 210 (1352)
.|+.-+++++.+||++-.....+...+.| .....|.+- ....+|++||.+|.||+||- .++..++...+
T Consensus 397 TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aT------T~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPg 469 (644)
T KOG2395|consen 397 TLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFAT------TESGYIVVGSLKGDIRLYDR-IGRRAKTALPG 469 (644)
T ss_pred cEEeecCCceEEecccccCcceeeeeeccccccccccceeee------cCCceEEEeecCCcEEeehh-hhhhhhhcccc
Confidence 56667777788998764322112122222 223445444 23458999999999999996 66666666668
Q ss_pred CCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCC
Q 000685 211 HKGSISCLMTFMASSGEALLVSGGSDGLLILWSAD 245 (1352)
Q Consensus 211 H~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~ 245 (1352)
-...|..+. .+.+|.+|+..+ +..+.+-++.
T Consensus 470 LG~~I~hVd---vtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 470 LGDAIKHVD---VTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred cCCceeeEE---eeccCcEEEEec-ccEEEEEEEe
Confidence 889999997 788998887644 5666666653
No 403
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=91.01 E-value=7.9 Score=41.67 Aligned_cols=90 Identities=10% Similarity=0.078 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcccccccccchhhHHHHhccCChhHHHHHHHHHHHcCCcH-HHHHH---
Q 000685 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGR-EAAFS--- 1094 (1352)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~-~~af~--- 1094 (1352)
..|..+|.....+|+++.|++.|+++-..... .....-+..+..+|...|+.+...+..+.+....... ...+.
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~ 177 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLY--PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAE 177 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcccc--ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHH
Confidence 46677788888888888888888877321100 0001112334567777788777777776666544321 11111
Q ss_pred -HHHcCCHHHHHHHHHH
Q 000685 1095 -AAILGDNALMEKAWQD 1110 (1352)
Q Consensus 1095 -~~~lgd~~~~~~~l~~ 1110 (1352)
....|+.+++++.+.+
T Consensus 178 ~~~~~~~~~~A~~~~~~ 194 (234)
T TIGR02521 178 LYYLRGQYKDARAYLER 194 (234)
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 1156666666666654
No 404
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.57 E-value=5 Score=49.08 Aligned_cols=134 Identities=10% Similarity=0.051 Sum_probs=87.2
Q ss_pred EEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCC--CE-----EEEEeCCCcEEEEeCCCCCc-cceecc
Q 000685 184 VAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGE--AL-----LVSGGSDGLLILWSADHGQD-SRELVP 255 (1352)
Q Consensus 184 LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg--~~-----LaSgS~DGtVrVWDl~tg~~-~~~~~~ 255 (1352)
+.++.....++-.|++.|+.+.... -|.. |..+. +.|+. .. =+.|-.|+.|.-||.+-... .-.+
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk-~~~d-i~mv~---~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~-- 421 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWK-FEDD-INMVD---ITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV-- 421 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEee-ccCC-cceee---ccCCcchhcccccccEEeecCCceEEecccccCcceeee--
Confidence 4445555678888999999998886 4444 55444 33332 11 23466789999999984321 1111
Q ss_pred cccccccc----cceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEEEE
Q 000685 256 KLSLKAHD----GGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTC 331 (1352)
Q Consensus 256 ~~~l~gH~----~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lLS~ 331 (1352)
-++|. ....|.+-. ..-+|+.||.+|.||+||- .+..-++ .+.+-..+|..+..+.+|+.|.|
T Consensus 422 ---~q~kqy~~k~nFsc~aTT----~sG~IvvgS~~GdIRLYdr-i~~~AKT-----AlPgLG~~I~hVdvtadGKwil~ 488 (644)
T KOG2395|consen 422 ---VQSKQYSTKNNFSCFATT----ESGYIVVGSLKGDIRLYDR-IGRRAKT-----ALPGLGDAIKHVDVTADGKWILA 488 (644)
T ss_pred ---eeccccccccccceeeec----CCceEEEeecCCcEEeehh-hhhhhhh-----cccccCCceeeEEeeccCcEEEE
Confidence 12222 123344433 3569999999999999996 5544333 26788889999999999998877
Q ss_pred ecCCeE
Q 000685 332 VKDSHI 337 (1352)
Q Consensus 332 s~Dg~I 337 (1352)
..+..|
T Consensus 489 Tc~tyL 494 (644)
T KOG2395|consen 489 TCKTYL 494 (644)
T ss_pred ecccEE
Confidence 777763
No 405
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=90.49 E-value=17 Score=44.06 Aligned_cols=169 Identities=15% Similarity=0.088 Sum_probs=106.5
Q ss_pred CEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCCceEE
Q 000685 13 KIVKIQLHPTHPWLVTADA---SDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQ 89 (1352)
Q Consensus 13 ~V~~lafSPdg~~LaTgs~---DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~s 89 (1352)
.-..++|+|+++.+..+.. ++++.+.|-.+++.+.+...+....-..+.+++..+....
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~------------------ 178 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTN------------------ 178 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEe------------------
Confidence 4567899999987776655 6899999999999988876554444455567777555543
Q ss_pred EEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecC--cEE-EEEeeCCccccccccccCCCC
Q 000685 90 VNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVN--KAI-FLDLVTMRGRDIPKQELDNKS 166 (1352)
Q Consensus 90 VaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D--~~I-~wDl~t~~~~~i~~~~~h~~~ 166 (1352)
..++.+.+.|........ ............-..+.+++++....+....+ +.+ ++|..++............ .
T Consensus 179 --~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~ 254 (381)
T COG3391 179 --SDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-A 254 (381)
T ss_pred --cCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-C
Confidence 146777777765553331 11111111133346788999998555555444 344 6687776432221112222 4
Q ss_pred eEEEEEeeccccCCCCEEEEEEC-CCcEEEEECCCCeEEEEEe
Q 000685 167 LVCMEFLSRSAVGDVPLVAFGSS-DGVIRVLSMISWKLVRRYT 208 (1352)
Q Consensus 167 V~~vaf~P~s~Spdg~~LasGs~-DGtIrIWDl~t~~~i~~l~ 208 (1352)
...+.+ +|+|..+.+... .+.+.+.|..+......+.
T Consensus 255 ~~~v~~-----~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 255 PRGVAV-----DPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred CCceeE-----CCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 556777 678998888754 4889999988877776654
No 406
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=90.47 E-value=31 Score=40.69 Aligned_cols=201 Identities=12% Similarity=-0.013 Sum_probs=104.1
Q ss_pred cCCeEEEEEcCCccccccccccccccCCCCeeeee-ecCCCCeEEEEEecCcEEEEEeeCCcc-ccccccc--cCCCCeE
Q 000685 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPP-PSTKGRHFLVICCVNKAIFLDLVTMRG-RDIPKQE--LDNKSLV 168 (1352)
Q Consensus 93 ~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~sla-fspdg~~lLasgs~D~~I~wDl~t~~~-~~i~~~~--~h~~~V~ 168 (1352)
..+.|.-|+..+++... . .....+.++. +...+ . +.++..+..+++..++.. ..+.... ......+
T Consensus 45 ~~~~i~r~~~~~g~~~~------~-~~p~~~~~~~~~d~~g--~-Lv~~~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~N 114 (307)
T COG3386 45 LGGRIHRLDPETGKKRV------F-PSPGGFSSGALIDAGG--R-LIACEHGVRLLDPDTGGKITLLAEPEDGLPLNRPN 114 (307)
T ss_pred CCCeEEEecCCcCceEE------E-ECCCCcccceeecCCC--e-EEEEccccEEEeccCCceeEEeccccCCCCcCCCC
Confidence 45666777766553321 0 1122223333 33333 3 344555666666554443 1111111 1124555
Q ss_pred EEEEeeccccCCCCEEEEEEC-----C----CcEEEEECC-CCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeC-CC
Q 000685 169 CMEFLSRSAVGDVPLVAFGSS-----D----GVIRVLSMI-SWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS-DG 237 (1352)
Q Consensus 169 ~vaf~P~s~Spdg~~LasGs~-----D----GtIrIWDl~-t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~-DG 237 (1352)
.+.. .++|.+.++-.. . ..-.+|-+. .+..++.+. .|-..-+.|+ +||+++.|..+.. .+
T Consensus 115 D~~v-----~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~-~~~~~~NGla---~SpDg~tly~aDT~~~ 185 (307)
T COG3386 115 DGVV-----DPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLD-DDLTIPNGLA---FSPDGKTLYVADTPAN 185 (307)
T ss_pred ceeE-----cCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeec-CcEEecCceE---ECCCCCEEEEEeCCCC
Confidence 6677 567776554333 0 111344444 455544443 5555667777 7999977666554 58
Q ss_pred cEEEEeCCC--CCccceecccccccccccceEEEEeeccCCCCCEEEEEECCC-cEEEEECCCCeEEEEecCCCcccccC
Q 000685 238 LLILWSADH--GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADK-TLAIWDTVSFKELRRIKPVPKLACHS 314 (1352)
Q Consensus 238 tVrVWDl~t--g~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~Dg-tV~IWDl~tg~~l~~~~~~~~l~~hs 314 (1352)
.|..|++.. +..... .....+..+.+..-.++... ++.+-+++..+| .|.+|+.. |+.+..+. ...
T Consensus 186 ~i~r~~~d~~~g~~~~~-~~~~~~~~~~G~PDG~~vDa---dG~lw~~a~~~g~~v~~~~pd-G~l~~~i~------lP~ 254 (307)
T COG3386 186 RIHRYDLDPATGPIGGR-RGFVDFDEEPGLPDGMAVDA---DGNLWVAAVWGGGRVVRFNPD-GKLLGEIK------LPV 254 (307)
T ss_pred eEEEEecCcccCccCCc-ceEEEccCCCCCCCceEEeC---CCCEEEecccCCceEEEECCC-CcEEEEEE------CCC
Confidence 888888763 211111 11112223344555666665 677776555554 99999988 88887753 222
Q ss_pred CceeEEEeC
Q 000685 315 VASWCHPRA 323 (1352)
Q Consensus 315 ~~V~svafs 323 (1352)
..+++++|-
T Consensus 255 ~~~t~~~Fg 263 (307)
T COG3386 255 KRPTNPAFG 263 (307)
T ss_pred CCCccceEe
Confidence 445566664
No 407
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=90.12 E-value=42 Score=44.86 Aligned_cols=15 Identities=13% Similarity=0.244 Sum_probs=8.8
Q ss_pred cCCHHHHHHHHHHHH
Q 000685 1031 TGQANIAREALKRLA 1045 (1352)
Q Consensus 1031 ~g~~~~A~~~~~~~~ 1045 (1352)
.++...+.+.|.++.
T Consensus 260 ~~D~a~al~~l~~Li 274 (824)
T PRK07764 260 AGDGAALFGTVDRVI 274 (824)
T ss_pred cCCHHHHHHHHHHHH
Confidence 466666666666553
No 408
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.11 E-value=1.5 Score=56.47 Aligned_cols=74 Identities=23% Similarity=0.418 Sum_probs=46.2
Q ss_pred eCCEEEEEeCCCcEEEEEcChhhhhhhHHHhcCCHHHHHHHHhhcChhhHHHHHHHHH-h---CCcchhhcccccccCcc
Q 000685 883 KDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFML-G---MGYATEALHLPGISKRL 958 (1352)
Q Consensus 883 ~~~~~~~~d~~~~~~~~~l~~~~~~f~~~~~~~d~~~a~~~~~~i~~~~~~~~a~fl~-~---~G~~e~Al~~~~ds~~~ 958 (1352)
.+..+||-|=+ |.|+++.=+-+.+|.+|||++-.+. +| |-+-+. + .||.|-+|.|. |..
T Consensus 714 HD~ifW~GDFN-----YRI~l~nEEVr~~v~~~d~~kL~e~----DQ-----L~~q~~~G~vF~gF~E~~ltF~---PTY 776 (1080)
T KOG0566|consen 714 HDYIFWLGDFN-----YRIDLSNEEVRRLVRNQDLDKLLEY----DQ-----LTQQMNAGQVFPGFHEGQLTFP---PTY 776 (1080)
T ss_pred CceEEEecccc-----eeecCCHHHHHHHHHhccHHHHhhH----HH-----HHHHHhcCcccccccccccccC---Ccc
Confidence 45667887766 4566666666778899998776542 21 111111 1 48999999987 778
Q ss_pred EEEeecccccHHHHHHH
Q 000685 959 EFDLAMQSNDLKRALQC 975 (1352)
Q Consensus 959 kf~la~~~g~l~~a~~~ 975 (1352)
|||+- .+++|....+
T Consensus 777 KyD~g--Td~YDTSeK~ 791 (1080)
T KOG0566|consen 777 KYDPG--TDDYDTSEKC 791 (1080)
T ss_pred cccCC--CCccccchhc
Confidence 88864 3444444333
No 409
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.01 E-value=23 Score=40.59 Aligned_cols=237 Identities=14% Similarity=0.047 Sum_probs=122.1
Q ss_pred ecCCCCeEEEEEecCcEEEEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCc-EEEEECCCCeEEEE
Q 000685 128 PSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGV-IRVLSMISWKLVRR 206 (1352)
Q Consensus 128 fspdg~~lLasgs~D~~I~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGt-IrIWDl~t~~~i~~ 206 (1352)
...|++.-+++.+.++.++.-..-. ...| .|+|+|. ...-++.+-.-|+ ..++|..+.+...+
T Consensus 43 ~~~dgs~g~a~~~eaGk~v~~~~lp-------aR~H-----gi~~~p~----~~ravafARrPGtf~~vfD~~~~~~pv~ 106 (366)
T COG3490 43 DARDGSFGAATLSEAGKIVFATALP-------ARGH-----GIAFHPA----LPRAVAFARRPGTFAMVFDPNGAQEPVT 106 (366)
T ss_pred eccCCceeEEEEccCCceeeeeecc-------cccC-----CeecCCC----CcceEEEEecCCceEEEECCCCCcCcEE
Confidence 3467776667777777664421110 1122 3667542 1334555555454 56788887765555
Q ss_pred EecCCCCCeeEEEEeeeCCCCCEEEEEeCC-----CcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEE
Q 000685 207 YTGGHKGSISCLMTFMASSGEALLVSGGSD-----GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQL 281 (1352)
Q Consensus 207 l~~gH~~~V~slawf~~s~dg~~LaSgS~D-----GtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~L 281 (1352)
+........+.=- .||++|.+|...-.| |.|-|||.+.+- ...-.+..|.-+...+.|.+ |++.|
T Consensus 107 ~~s~~~RHfyGHG--vfs~dG~~LYATEndfd~~rGViGvYd~r~~f-----qrvgE~~t~GiGpHev~lm~---DGrtl 176 (366)
T COG3490 107 LVSQEGRHFYGHG--VFSPDGRLLYATENDFDPNRGVIGVYDAREGF-----QRVGEFSTHGIGPHEVTLMA---DGRTL 176 (366)
T ss_pred EecccCceeeccc--ccCCCCcEEEeecCCCCCCCceEEEEeccccc-----ceecccccCCcCcceeEEec---CCcEE
Confidence 4311111111100 279999999876544 779999998542 12334677887888899998 78888
Q ss_pred EEEEC-------CC-----------cEEEEECCCCeEEEEecCCCccc--ccCCceeEEEeCCCCCEEEEe-cCCeEEec
Q 000685 282 ITIGA-------DK-----------TLAIWDTVSFKELRRIKPVPKLA--CHSVASWCHPRAPNLDILTCV-KDSHIWAI 340 (1352)
Q Consensus 282 aSgs~-------Dg-----------tV~IWDl~tg~~l~~~~~~~~l~--~hs~~V~svafspdg~lLS~s-~Dg~IWDi 340 (1352)
+.+.. -| ++.+.|..+|+.+.+. .+. .+...|..++..+||.+..++ ..|--=|
T Consensus 177 vvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh----~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d- 251 (366)
T COG3490 177 VVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKH----TLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRND- 251 (366)
T ss_pred EEeCCceecccccCccccchhhcCccEEEEeccccchhhhc----cCchhhhhcceeeeeeCCCCcEEEEEEeeCCCcc-
Confidence 76643 11 2333444445444331 122 344456666666666655432 1110000
Q ss_pred cCCcccccccCccccCCCCCCeEEecCC------cccEEEEEEecCCCcEEEEEECCCeEEEEecCCCC
Q 000685 341 EHPTYSALTRPLCELSSLVPPQVLAHHK------KLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSL 403 (1352)
Q Consensus 341 ~t~~~~~~~~~l~~~~~~~~~~~l~~h~------~~~V~~la~sp~~~~lLatGs~DG~IlriWd~~~~ 403 (1352)
+.++.. -.....+...+.... ...|-+|+.+.. ..+++..+-.|....+||..+.
T Consensus 252 ----~ppLvg---~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~-~glV~lTSP~GN~~vi~da~tG 312 (366)
T COG3490 252 ----LPPLVG---HFRKGEPLEFLDLPEEQTAAFANYIGSIAANRR-DGLVALTSPRGNRAVIWDAATG 312 (366)
T ss_pred ----CCccee---eccCCCcCcccCCCHHHHHHHHhhhhheeeccc-CCeEEEecCCCCeEEEEEcCCC
Confidence 000000 000111111111110 126778888874 4557777777776679987754
No 410
>PHA02713 hypothetical protein; Provisional
Probab=89.93 E-value=16 Score=46.84 Aligned_cols=185 Identities=10% Similarity=0.040 Sum_probs=88.4
Q ss_pred CCCeEEEEEecC-c------EEEEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCC-----cEEEEEC
Q 000685 131 KGRHFLVICCVN-K------AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDG-----VIRVLSM 198 (1352)
Q Consensus 131 dg~~lLasgs~D-~------~I~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DG-----tIrIWDl 198 (1352)
++. ++++|+.+ + +.++|..+.....+............+.+ ++.+.+.|+.++ ++..||.
T Consensus 303 ~~~-IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~-------~g~IYviGG~~~~~~~~sve~Ydp 374 (557)
T PHA02713 303 DNE-IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI-------DDTIYAIGGQNGTNVERTIECYTM 374 (557)
T ss_pred CCE-EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE-------CCEEEEECCcCCCCCCceEEEEEC
Confidence 454 66777643 1 22457666543333222222222333334 677778888764 4888998
Q ss_pred CCCeEEE--EEecCCCCCeeEEEEeeeCCCCCEEEEEeCCC-----------------------cEEEEeCCCCCcccee
Q 000685 199 ISWKLVR--RYTGGHKGSISCLMTFMASSGEALLVSGGSDG-----------------------LLILWSADHGQDSREL 253 (1352)
Q Consensus 199 ~t~~~i~--~l~~gH~~~V~slawf~~s~dg~~LaSgS~DG-----------------------tVrVWDl~tg~~~~~~ 253 (1352)
.+.+... .+. +...-.++. .-++.+.+.|+.++ +|..||..+.+...
T Consensus 375 ~~~~W~~~~~mp--~~r~~~~~~----~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~-- 446 (557)
T PHA02713 375 GDDKWKMLPDMP--IALSSYGMC----VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWET-- 446 (557)
T ss_pred CCCeEEECCCCC--cccccccEE----EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEee--
Confidence 8654432 221 111111221 12677888887653 47778877765321
Q ss_pred cccccccccccceEEEEeeccCCCCCEEEEEECC------CcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCC
Q 000685 254 VPKLSLKAHDGGVVAVELSRVMGGSPQLITIGAD------KTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD 327 (1352)
Q Consensus 254 ~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~D------gtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~ 327 (1352)
...+....... +++.. ++.+.+.||.+ ..+..||..+...+....+ +....... .++.. +++
T Consensus 447 --v~~m~~~r~~~-~~~~~----~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~---m~~~r~~~-~~~~~-~~~ 514 (557)
T PHA02713 447 --LPNFWTGTIRP-GVVSH----KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITT---TESRLSAL-HTILH-DNT 514 (557)
T ss_pred --cCCCCcccccC-cEEEE----CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccc---cCcccccc-eeEEE-CCE
Confidence 11111111111 22222 45677777754 2467788876222332221 22222222 22222 445
Q ss_pred -EEEEecCCe----EEeccCC
Q 000685 328 -ILTCVKDSH----IWAIEHP 343 (1352)
Q Consensus 328 -lLS~s~Dg~----IWDi~t~ 343 (1352)
++.||.|+. .||..+.
T Consensus 515 iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 515 IMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred EEEEeeecceeehhhcCcccc
Confidence 457887772 4666554
No 411
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=89.85 E-value=13 Score=47.71 Aligned_cols=143 Identities=15% Similarity=0.160 Sum_probs=78.4
Q ss_pred eEEEEEecCc------EE-EEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECC------CcEEEEECCC
Q 000685 134 HFLVICCVNK------AI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSD------GVIRVLSMIS 200 (1352)
Q Consensus 134 ~lLasgs~D~------~I-~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~D------GtIrIWDl~t 200 (1352)
.+++.|+.++ .+ .+|..++......... ....-.+++++ ++.+.++|+.| .++..||..+
T Consensus 286 ~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~------~~~lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 286 KLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL------NGKLYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred eEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE------CCEEEEEccccCCCcccceEEEecCCC
Confidence 3677777663 22 3366665433332222 22223445553 57788889888 3577888876
Q ss_pred CeEEE--EEec-CCCCCeeEEEEeeeCCCCCEEEEEeCCCc-----EEEEeCCCCCccceecccccccccccceEEEEee
Q 000685 201 WKLVR--RYTG-GHKGSISCLMTFMASSGEALLVSGGSDGL-----LILWSADHGQDSRELVPKLSLKAHDGGVVAVELS 272 (1352)
Q Consensus 201 ~~~i~--~l~~-gH~~~V~slawf~~s~dg~~LaSgS~DGt-----VrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafs 272 (1352)
++... .+.. .+...+..+ +|.+.+.|+.||. |-.||..+.+... .-.+.....++-.+.+
T Consensus 359 ~~W~~~a~M~~~R~~~~v~~l-------~g~iYavGG~dg~~~l~svE~YDp~~~~W~~----va~m~~~r~~~gv~~~- 426 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFGVAVL-------DGKLYAVGGFDGEKSLNSVECYDPVTNKWTP----VAPMLTRRSGHGVAVL- 426 (571)
T ss_pred CceeccCCccCccccceeEEE-------CCEEEEEeccccccccccEEEecCCCCcccc----cCCCCcceeeeEEEEE-
Confidence 65432 2211 122233222 7889999999975 7778887765322 1111111222222222
Q ss_pred ccCCCCCEEEEEECCC------cEEEEECCCCe
Q 000685 273 RVMGGSPQLITIGADK------TLAIWDTVSFK 299 (1352)
Q Consensus 273 p~~~dg~~LaSgs~Dg------tV~IWDl~tg~ 299 (1352)
++.+.+.||.|+ ++..||..+.+
T Consensus 427 ----~g~iYi~GG~~~~~~~l~sve~YDP~t~~ 455 (571)
T KOG4441|consen 427 ----GGKLYIIGGGDGSSNCLNSVECYDPETNT 455 (571)
T ss_pred ----CCEEEEEcCcCCCccccceEEEEcCCCCc
Confidence 577888888654 56778877654
No 412
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.83 E-value=33 Score=39.64 Aligned_cols=168 Identities=13% Similarity=0.081 Sum_probs=101.1
Q ss_pred CCCeeeeeecCCCCeEEEEEecCcEEEE-EeeCCcc-ccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEE
Q 000685 120 TSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRG-RDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLS 197 (1352)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~D~~I~w-Dl~t~~~-~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWD 197 (1352)
...+.++.|+|+.+.++++....-.+++ +. .|+. +.++... -...-.|+| ..+++++++--.++.+.++.
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~-~GdlirtiPL~g--~~DpE~Iey-----ig~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTK-EGDLIRTIPLTG--FSDPETIEY-----IGGNQFVIVDERDRALYLFT 156 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEec-CCceEEEecccc--cCChhHeEE-----ecCCEEEEEehhcceEEEEE
Confidence 4459999999999877777776666666 43 3332 2222222 223345777 45677777777888888887
Q ss_pred CCCCeEEEE-----Ee---cCC-CCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccc-----
Q 000685 198 MISWKLVRR-----YT---GGH-KGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHD----- 263 (1352)
Q Consensus 198 l~t~~~i~~-----l~---~gH-~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~----- 263 (1352)
+.....+.. +. ..+ +...-.++ .++....|..+-.-.-++||.+..+...-.. + ....+.
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA---~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~-~--~~~~~~~~~~~ 230 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLA---WDPVDHRLFVAKERNPIGIFEVTQSPSSLSV-H--ASLDPTADRDL 230 (316)
T ss_pred EcCCccEEeccceEEeccccCCCCcCceeee---cCCCCceEEEEEccCCcEEEEEecCCccccc-c--cccCcccccce
Confidence 764422111 11 123 55667787 4777777777777777777776643211000 0 001111
Q ss_pred --cceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEe
Q 000685 264 --GGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRI 304 (1352)
Q Consensus 264 --~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~ 304 (1352)
..|.++.|++ ..+.+|+-+..++.+.-.|.. |..+..+
T Consensus 231 f~~DvSgl~~~~--~~~~LLVLS~ESr~l~Evd~~-G~~~~~l 270 (316)
T COG3204 231 FVLDVSGLEFNA--ITNSLLVLSDESRRLLEVDLS-GEVIELL 270 (316)
T ss_pred EeeccccceecC--CCCcEEEEecCCceEEEEecC-CCeeeeE
Confidence 2367788988 367788888888888888865 4444443
No 413
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=88.69 E-value=49 Score=37.72 Aligned_cols=152 Identities=13% Similarity=0.083 Sum_probs=84.8
Q ss_pred CCCeEEEEEecCcEEEEEee-CCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEE--
Q 000685 131 KGRHFLVICCVNKAIFLDLV-TMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRY-- 207 (1352)
Q Consensus 131 dg~~lLasgs~D~~I~wDl~-t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l-- 207 (1352)
.++ .|+.|+++|+..++.. .... ....+...|..+... ++-+.+++-+ |+.+.++++.........
T Consensus 6 ~~~-~L~vGt~~Gl~~~~~~~~~~~----~~i~~~~~I~ql~vl-----~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~ 74 (275)
T PF00780_consen 6 WGD-RLLVGTEDGLYVYDLSDPSKP----TRILKLSSITQLSVL-----PELNLLLVLS-DGQLYVYDLDSLEPVSTSAP 74 (275)
T ss_pred CCC-EEEEEECCCEEEEEecCCccc----eeEeecceEEEEEEe-----cccCEEEEEc-CCccEEEEchhhcccccccc
Confidence 344 7888899997777772 2211 122333449999885 4555555553 599999999754333210
Q ss_pred -----------ecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccc-eecccccccccccceEEEEeeccC
Q 000685 208 -----------TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSR-ELVPKLSLKAHDGGVVAVELSRVM 275 (1352)
Q Consensus 208 -----------~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~-~~~~~~~l~gH~~~V~slafsp~~ 275 (1352)
.-.....+...+ ......+...+.....++|.+|......... .. ...+. -.+.+.+++|..
T Consensus 75 ~~~~~~~~~~~~~~~~~~v~~f~-~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~--~ke~~-lp~~~~~i~~~~-- 148 (275)
T PF00780_consen 75 LAFPKSRSLPTKLPETKGVSFFA-VNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKL--LKEIS-LPDPPSSIAFLG-- 148 (275)
T ss_pred ccccccccccccccccCCeeEEe-eccccccceEEEEEECCEEEEEEEECCcccccce--eEEEE-cCCCcEEEEEeC--
Confidence 001222333221 0023344455555566699998887642111 11 11111 236688999985
Q ss_pred CCCCEEEEEECCCcEEEEECCCCeEEEE
Q 000685 276 GGSPQLITIGADKTLAIWDTVSFKELRR 303 (1352)
Q Consensus 276 ~dg~~LaSgs~DgtV~IWDl~tg~~l~~ 303 (1352)
+.|+.|.. +...+.|+.++.....
T Consensus 149 ---~~i~v~~~-~~f~~idl~~~~~~~l 172 (275)
T PF00780_consen 149 ---NKICVGTS-KGFYLIDLNTGSPSEL 172 (275)
T ss_pred ---CEEEEEeC-CceEEEecCCCCceEE
Confidence 57777664 4478889997765443
No 414
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=88.48 E-value=7.1 Score=49.93 Aligned_cols=110 Identities=12% Similarity=0.080 Sum_probs=71.3
Q ss_pred CCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCC-----CCccceec
Q 000685 180 DVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH-----GQDSRELV 254 (1352)
Q Consensus 180 dg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~t-----g~~~~~~~ 254 (1352)
-++.-++-++...+.|||.+.+.....-.-...+.|.++.|. ..++++.+++.+..+.|.++.-.. ........
T Consensus 40 ~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWt-st~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i 118 (631)
T PF12234_consen 40 IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWT-STPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPI 118 (631)
T ss_pred cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceee-ecCCCCEEEEEEcCcEEEEEEccchhhhcCCccccee
Confidence 355555555566899999998765433221457899999986 889999999999999999986531 11111111
Q ss_pred ccccccccc-cceEEEEeeccCCCCCEEEEEECCCcEEEEEC
Q 000685 255 PKLSLKAHD-GGVVAVELSRVMGGSPQLITIGADKTLAIWDT 295 (1352)
Q Consensus 255 ~~~~l~gH~-~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl 295 (1352)
....+..|+ .+|.+..|.+ +|.+++.+ ++.+.|+|-
T Consensus 119 ~~i~i~~~T~h~Igds~Wl~---~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 119 RKIDISSHTPHPIGDSIWLK---DGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred EEEEeecCCCCCccceeEec---CCeEEEEe--CCEEEEECC
Confidence 112234444 5688899987 56555444 367788773
No 415
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=88.42 E-value=5.2 Score=51.78 Aligned_cols=164 Identities=10% Similarity=-0.054 Sum_probs=100.5
Q ss_pred hcCCHHHHHHHHhh-cC-----h---hhHHHHHHHHHhCCcchhhccccccc----CccE---EE---eecccccHHHHH
Q 000685 913 AYGDSVSAVKWASR-LG-----R---EHHDDLAQFMLGMGYATEALHLPGIS----KRLE---FD---LAMQSNDLKRAL 973 (1352)
Q Consensus 913 ~~~d~~~a~~~~~~-i~-----~---~~~~~~a~fl~~~G~~e~Al~~~~ds----~~~k---f~---la~~~g~l~~a~ 973 (1352)
..++|++|++++.. +. + ..+..++.++..+|.+++|+...... |+.- +. +.+++|+++.|+
T Consensus 306 ~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 306 ADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 35677777776655 21 1 13677788888888888877654321 2211 22 234677888888
Q ss_pred HHHhhcccccccCCCCCCCCccccccccccchhhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcccc
Q 000685 974 QCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGA 1053 (1352)
Q Consensus 974 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~~~~ 1053 (1352)
+.....-.. .. +....|..+|......|+++.|.++|+++-... +.-.
T Consensus 386 ~~~~~al~~-~p------------------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~ 433 (615)
T TIGR00990 386 EDFDKALKL-NS------------------------------EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFI 433 (615)
T ss_pred HHHHHHHHh-CC------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCH
Confidence 776321110 00 112678889999999999999999999985422 2111
Q ss_pred cccccchhhHHHHhccCChhHHHHHHHHHHHcCCcHHH-----HHHHHHcCCHHHHHHHHHHc
Q 000685 1054 LQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREA-----AFSAAILGDNALMEKAWQDT 1111 (1352)
Q Consensus 1054 ~~~~~~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~~-----af~~~~lgd~~~~~~~l~~~ 1111 (1352)
. -+..|..+|...|+.+......+.+......... +.....+|+++++++.+.+.
T Consensus 434 ~---~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~A 493 (615)
T TIGR00990 434 F---SHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTA 493 (615)
T ss_pred H---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 1 1234566788889998888888877764322011 11122778888888777653
No 416
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=88.41 E-value=1.2 Score=55.66 Aligned_cols=161 Identities=20% Similarity=0.100 Sum_probs=90.2
Q ss_pred HHHhcCCHHHHHHHHhh-cCh-------h------hHHHHHHHHHhCCcchhhcccccccCccEEEeecccccHHHHHHH
Q 000685 910 CLAAYGDSVSAVKWASR-LGR-------E------HHDDLAQFMLGMGYATEALHLPGISKRLEFDLAMQSNDLKRALQC 975 (1352)
Q Consensus 910 ~~~~~~d~~~a~~~~~~-i~~-------~------~~~~~a~fl~~~G~~e~Al~~~~ds~~~kf~la~~~g~l~~a~~~ 975 (1352)
+.+.+|+|+.|..+... +.. + +.+.+|.++..+|-+.+|..+... |+.|
T Consensus 208 ~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~-----------------AL~i 270 (508)
T KOG1840|consen 208 MYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEE-----------------ALTI 270 (508)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHH-----------------HHHH
Confidence 45567999999886665 221 1 245688888888888888887765 4555
Q ss_pred HhhcccccccCCCCCCCCccccccccccchhhhhhhhhhhhh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcccc
Q 000685 976 LITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKF--AKEFLDLIDAADATGQANIAREALKRLAAAGSVKGA 1053 (1352)
Q Consensus 976 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~~~~ 1053 (1352)
... ..|-... +.-...|+.+..++|++..|+.|++++ -.+...
T Consensus 271 ~e~--------------------------------~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A---l~I~~~ 315 (508)
T KOG1840|consen 271 REE--------------------------------VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERA---LEIYEK 315 (508)
T ss_pred HHH--------------------------------hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHH---HHHHHH
Confidence 411 1111111 256788999999999999999999988 322111
Q ss_pred cccc-------cchhhHHHHhccCChhHHHHHHHHHHHcCCcHHHHHHHHHcCCHHHHHHHHHHcCCcHHHHHHHH
Q 000685 1054 LQGH-------ELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFSAAILGDNALMEKAWQDTGMLAEAVLHAH 1122 (1352)
Q Consensus 1054 ~~~~-------~~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~~af~~~~lgd~~~~~~~l~~~~~~~~A~~~A~ 1122 (1352)
+++. -+..+..+++..++.+.-.++...+.+.=..-..-.+-.+-|-....-.+|..+|++.||.-+.+
T Consensus 316 ~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k 391 (508)
T KOG1840|consen 316 LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYK 391 (508)
T ss_pred hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 1111 12333456666666666555544433311100000000011222234456667777777765544
No 417
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=88.39 E-value=2.6 Score=46.34 Aligned_cols=89 Identities=16% Similarity=0.076 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcccccccccchhhHH-HHhccCC--hhHHHHHHHHHHHcCCcH-----H
Q 000685 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLAL-RLANHGE--LTRLSGLVTNLISLGLGR-----E 1090 (1352)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~l-l~~~~g~--~~~l~~l~~~a~~~~~~~-----~ 1090 (1352)
.-|..||..++..|+++.|..||+++-... ++.+- -+..+.. +|...|+ .+...++.+.+.+..... +
T Consensus 74 ~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~---~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~ 149 (198)
T PRK10370 74 EQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAE---LYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALML 149 (198)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH---HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHH
Confidence 799999999999999999999999995533 21111 1123333 4556666 377777777777765431 2
Q ss_pred HHHHHHHcCCHHHHHHHHHHc
Q 000685 1091 AAFSAAILGDNALMEKAWQDT 1111 (1352)
Q Consensus 1091 ~af~~~~lgd~~~~~~~l~~~ 1111 (1352)
.|+.++.+||++++++.|.+.
T Consensus 150 LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 150 LASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 333334888888888888754
No 418
>PHA03247 large tegument protein UL36; Provisional
Probab=88.35 E-value=14 Score=53.18 Aligned_cols=7 Identities=29% Similarity=0.453 Sum_probs=2.8
Q ss_pred ccEEEee
Q 000685 957 RLEFDLA 963 (1352)
Q Consensus 957 ~~kf~la 963 (1352)
..||.+|
T Consensus 804 ~~RF~VA 810 (3151)
T PHA03247 804 DRRFHVA 810 (3151)
T ss_pred CceEEEe
Confidence 3344433
No 419
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.33 E-value=3.9 Score=48.69 Aligned_cols=111 Identities=17% Similarity=0.220 Sum_probs=72.3
Q ss_pred ChhhhhhhHHHhcCCHHHHHHHHhhcChh-h--------HHHHHHHHH-------hCCcchhhcccccc---cCccEEEe
Q 000685 902 SHPGIRCRCLAAYGDSVSAVKWASRLGRE-H--------HDDLAQFML-------GMGYATEALHLPGI---SKRLEFDL 962 (1352)
Q Consensus 902 ~~~~~~f~~~~~~~d~~~a~~~~~~i~~~-~--------~~~~a~fl~-------~~G~~e~Al~~~~d---s~~~kf~l 962 (1352)
++..-+-..++-+||++.|+++|.-+... . .-..-+||+ .+-|.+.||.+-.- ....+=.+
T Consensus 420 dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~ 499 (840)
T KOG2003|consen 420 DLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNI 499 (840)
T ss_pred hhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCce
Confidence 34444456778899999999988763221 1 122346774 46788888876422 12345678
Q ss_pred ecccccHHHHHHHHhhccccccc-CCCCCCCCccccccccccchhhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHH
Q 000685 963 AMQSNDLKRALQCLITMSNSRDI-GQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREAL 1041 (1352)
Q Consensus 963 a~~~g~l~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~A~~~~ 1041 (1352)
+...|+|+.|.+.- ++. ..+ ..-..---.+|=.|.++|+++.|.+||
T Consensus 500 ~f~ngd~dka~~~y------keal~nd--------------------------asc~ealfniglt~e~~~~ldeald~f 547 (840)
T KOG2003|consen 500 AFANGDLDKAAEFY------KEALNND--------------------------ASCTEALFNIGLTAEALGNLDEALDCF 547 (840)
T ss_pred eeecCcHHHHHHHH------HHHHcCc--------------------------hHHHHHHHHhcccHHHhcCHHHHHHHH
Confidence 99999999999876 321 111 000022334577788999999999999
Q ss_pred HHH
Q 000685 1042 KRL 1044 (1352)
Q Consensus 1042 ~~~ 1044 (1352)
-++
T Consensus 548 ~kl 550 (840)
T KOG2003|consen 548 LKL 550 (840)
T ss_pred HHH
Confidence 988
No 420
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=88.31 E-value=14 Score=42.38 Aligned_cols=120 Identities=17% Similarity=0.163 Sum_probs=72.7
Q ss_pred CCeEEEEEeeccccCCCCEEEEEECCC--cEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEE
Q 000685 165 KSLVCMEFLSRSAVGDVPLVAFGSSDG--VIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1352)
Q Consensus 165 ~~V~~vaf~P~s~Spdg~~LasGs~DG--tIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVW 242 (1352)
.....+.| ..++.++-+.+.-| .|+.+|+.+++......-...-.--.+.. . ++.+..-.-.++...+|
T Consensus 45 aFTQGL~~-----~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~---~-~d~l~qLTWk~~~~f~y 115 (264)
T PF05096_consen 45 AFTQGLEF-----LDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITI---L-GDKLYQLTWKEGTGFVY 115 (264)
T ss_dssp -EEEEEEE-----EETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEE---E-TTEEEEEESSSSEEEEE
T ss_pred ccCccEEe-----cCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEE---E-CCEEEEEEecCCeEEEE
Confidence 34556777 34677777777666 79999999998876554233333333331 1 44455556678999999
Q ss_pred eCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEec
Q 000685 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIK 305 (1352)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~ 305 (1352)
|..+-+.+.++ .+. +.=+.++. ++..|+......+++++|..+.+..+++.
T Consensus 116 d~~tl~~~~~~----~y~---~EGWGLt~-----dg~~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 116 DPNTLKKIGTF----PYP---GEGWGLTS-----DGKRLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp ETTTTEEEEEE----E-S---SS--EEEE-----CSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred ccccceEEEEE----ecC---CcceEEEc-----CCCEEEEECCccceEEECCcccceEEEEE
Confidence 99887665543 233 23455663 45566666667889999998887776653
No 421
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=88.28 E-value=7.8 Score=41.71 Aligned_cols=143 Identities=14% Similarity=0.009 Sum_probs=83.3
Q ss_pred HHHhcCCHHHHHHHHhh---cC---hhhHHHHHHHHHhCCcchhhccccccc-------CccEE---EeecccccHHHHH
Q 000685 910 CLAAYGDSVSAVKWASR---LG---REHHDDLAQFMLGMGYATEALHLPGIS-------KRLEF---DLAMQSNDLKRAL 973 (1352)
Q Consensus 910 ~~~~~~d~~~a~~~~~~---i~---~~~~~~~a~fl~~~G~~e~Al~~~~ds-------~~~kf---~la~~~g~l~~a~ 973 (1352)
+....|++++|.+.+.. .. ...+..++..+..+|-.++|+...... ....+ .+.++.|+++.|.
T Consensus 40 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~ 119 (234)
T TIGR02521 40 GYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAM 119 (234)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHH
Confidence 34456888888876665 12 123566777777777777665544221 11111 1234567777777
Q ss_pred HHHhhcccccccCCCCCCCCccccccccccchhhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcccc
Q 000685 974 QCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGA 1053 (1352)
Q Consensus 974 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~~~~ 1053 (1352)
+.......... .......|..+|......|+++.|+++|.++-.... ...
T Consensus 120 ~~~~~~~~~~~-----------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~ 169 (234)
T TIGR02521 120 QQFEQAIEDPL-----------------------------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRP 169 (234)
T ss_pred HHHHHHHhccc-----------------------------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCh
Confidence 77632211100 001125678899999999999999999998854321 100
Q ss_pred cccccchhhHHHHhccCChhHHHHHHHHHHHc
Q 000685 1054 LQGHELRGLALRLANHGELTRLSGLVTNLISL 1085 (1352)
Q Consensus 1054 ~~~~~~~~l~ll~~~~g~~~~l~~l~~~a~~~ 1085 (1352)
.-+..|..+|...|+.++...+.+.+...
T Consensus 170 ---~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 170 ---ESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 01234456777778877766666665554
No 422
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=88.19 E-value=3.3 Score=55.04 Aligned_cols=181 Identities=16% Similarity=0.022 Sum_probs=105.4
Q ss_pred hHHHhcCCHHHHHHHHhhcCh-------hhHHHHHHHHHhCCcchhhccccc----ccCcc-------EEE---eecccc
Q 000685 909 RCLAAYGDSVSAVKWASRLGR-------EHHDDLAQFMLGMGYATEALHLPG----ISKRL-------EFD---LAMQSN 967 (1352)
Q Consensus 909 ~~~~~~~d~~~a~~~~~~i~~-------~~~~~~a~fl~~~G~~e~Al~~~~----ds~~~-------kf~---la~~~g 967 (1352)
..++.+|++++|++.++.+-+ .....++..+..+|-+++|+.+.. ..+.. ... +-++.|
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 345778999999987777322 223447888999999999987632 11211 111 335779
Q ss_pred cHHHHHHHHhhcccccccCCCCCCCCcccccccccc-chhhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000685 968 DLKRALQCLITMSNSRDIGQDHPGLDLNDILTLTTK-KENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAA 1046 (1352)
Q Consensus 968 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~A~~~~~~~~~ 1046 (1352)
+++.|++.+..+...... +.. ++.+... .++. ...-+..++.....+|+.+.|+++|+++..
T Consensus 325 ~~~eA~~~l~~~~~~~P~-------~~~-~~~~~~~~p~~~---------~~~a~~~~a~~l~~~g~~~eA~~~l~~al~ 387 (765)
T PRK10049 325 NYPGALTVTAHTINNSPP-------FLR-LYGSPTSIPNDD---------WLQGQSLLSQVAKYSNDLPQAEMRARELAY 387 (765)
T ss_pred cHHHHHHHHHHHhhcCCc-------eEe-ecCCCCCCCCch---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999987443322100 000 0000000 0000 012345679999999999999999999754
Q ss_pred cCCcccccccccchhhHHHHhccCChhHHHHHHHHHHHcCCcH-----HHHHHHHHcCCHHHHHHHHHH
Q 000685 1047 AGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGR-----EAAFSAAILGDNALMEKAWQD 1110 (1352)
Q Consensus 1047 ~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~-----~~af~~~~lgd~~~~~~~l~~ 1110 (1352)
. .+...- =+..|+.+|...|+.++..++.+.+....-.. ..|..+..+|+.+++++++.+
T Consensus 388 ~-~P~n~~---l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ 452 (765)
T PRK10049 388 N-APGNQG---LRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDD 452 (765)
T ss_pred h-CCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 2 221111 12234457778888888888888887754320 122222266677777666653
No 423
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=88.03 E-value=45 Score=39.24 Aligned_cols=195 Identities=11% Similarity=-0.007 Sum_probs=0.0
Q ss_pred CCCeeeeeecCCCCeEEEEEecCcEEEEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECC
Q 000685 120 TSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI 199 (1352)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~D~~I~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~ 199 (1352)
......+....++ .+...+..+.+..-.+.++.... ........+..+.. +++|.++++++......-||.-
T Consensus 103 pgs~~~i~~l~~~--~~~l~~~~G~iy~T~DgG~tW~~-~~~~~~gs~~~~~r-----~~dG~~vavs~~G~~~~s~~~G 174 (302)
T PF14870_consen 103 PGSPFGITALGDG--SAELAGDRGAIYRTTDGGKTWQA-VVSETSGSINDITR-----SSDGRYVAVSSRGNFYSSWDPG 174 (302)
T ss_dssp SS-EEEEEEEETT--EEEEEETT--EEEESSTTSSEEE-EE-S----EEEEEE------TTS-EEEEETTSSEEEEE-TT
T ss_pred CCCeeEEEEcCCC--cEEEEcCCCcEEEeCCCCCCeeE-cccCCcceeEeEEE-----CCCCcEEEEECcccEEEEecCC
Q ss_pred CCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEe-CCCCCccceecccccccccccceEEEEeeccCCCC
Q 000685 200 SWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS-ADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGS 278 (1352)
Q Consensus 200 t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWD-l~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg 278 (1352)
.......-. .....|..|. |.+++.+.+.+ ..|.|++=+ ......... +...+......+..++|.+ ++
T Consensus 175 ~~~w~~~~r-~~~~riq~~g---f~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~--~~~~~~~~~~~~ld~a~~~---~~ 244 (302)
T PF14870_consen 175 QTTWQPHNR-NSSRRIQSMG---FSPDGNLWMLA-RGGQIQFSDDPDDGETWSE--PIIPIKTNGYGILDLAYRP---PN 244 (302)
T ss_dssp -SS-EEEE---SSS-EEEEE---E-TTS-EEEEE-TTTEEEEEE-TTEEEEE-----B-TTSS--S-EEEEEESS---SS
T ss_pred CccceEEcc-Cccceehhce---ecCCCCEEEEe-CCcEEEEccCCCCcccccc--ccCCcccCceeeEEEEecC---CC
Q ss_pred CEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEEEEecCCeE
Q 000685 279 PQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHI 337 (1352)
Q Consensus 279 ~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lLS~s~Dg~I 337 (1352)
...++|+.. ..+...+.|+..+. ......-..+++.+.|.++.+-++.+.+|.|
T Consensus 245 ~~wa~gg~G--~l~~S~DgGktW~~---~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~l 298 (302)
T PF14870_consen 245 EIWAVGGSG--TLLVSTDGGKTWQK---DRVGENVPSNLYRIVFVNPDKGFVLGQDGVL 298 (302)
T ss_dssp -EEEEESTT---EEEESSTTSS-EE----GGGTTSSS---EEEEEETTEEEEE-STTEE
T ss_pred CEEEEeCCc--cEEEeCCCCccceE---CccccCCCCceEEEEEcCCCceEEECCCcEE
No 424
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.95 E-value=32 Score=44.29 Aligned_cols=105 Identities=15% Similarity=0.105 Sum_probs=50.5
Q ss_pred HcCCHHHHHHHHHHHHhcCCcccccccccchhh-----------HHHHhccCChhHHHHHHHHHHHcCCcHHHHHHHHHc
Q 000685 1030 ATGQANIAREALKRLAAAGSVKGALQGHELRGL-----------ALRLANHGELTRLSGLVTNLISLGLGREAAFSAAIL 1098 (1352)
Q Consensus 1030 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l-----------~ll~~~~g~~~~l~~l~~~a~~~~~~~~~af~~~~l 1098 (1352)
..|+...|...++++..++. +-....++..+ +.-+...||..++.+++..+...|.. -..|...++
T Consensus 211 s~Gdlr~al~~LekL~~y~~--~~It~e~V~~ll~~s~~~~vf~Lidal~~~d~~~al~~l~~L~~~g~~-~~~il~~L~ 287 (585)
T PRK14950 211 ATGSMRDAENLLQQLATTYG--GEISLSQVQSLLGISGDEEVKALAEALLAKDLKAALRTLNAVAADGAD-LRQFTRDLV 287 (585)
T ss_pred cCCCHHHHHHHHHHHHHhcC--CCCCHHHHHHHhcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHH
Confidence 34777777777777644321 11111111111 12334567787777777777777765 444443333
Q ss_pred CCHHHHHHHHHHc-----C----CcHHHHHHHHHcCCCchHHHHHHHH
Q 000685 1099 GDNALMEKAWQDT-----G----MLAEAVLHAHAHGRPSLKNLVEAWN 1137 (1352)
Q Consensus 1099 gd~~~~~~~l~~~-----~----~~~~A~~~A~t~~~~~~~~~~~~w~ 1137 (1352)
..+.....+-... + +...+...|+.+...++..+++.-.
T Consensus 288 ~~lR~Ll~lk~g~~~~~l~i~p~~~~~~~~qa~~~s~~~L~~~l~~l~ 335 (585)
T PRK14950 288 EYLRQVMLLNSGADRSLLDLTADEKAALQKVSQIANLEALTKWVKAFS 335 (585)
T ss_pred HHHHHHHHHhhcCccccccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3333332221100 0 1123344566666555555554443
No 425
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=87.90 E-value=4.8 Score=52.52 Aligned_cols=194 Identities=11% Similarity=-0.019 Sum_probs=106.1
Q ss_pred HHHhcCCHHHHHHHHhh---cCh---hhHHHHHHHHHhCCcchhhcccccc-------cCccE--EEeecccccHHHHHH
Q 000685 910 CLAAYGDSVSAVKWASR---LGR---EHHDDLAQFMLGMGYATEALHLPGI-------SKRLE--FDLAMQSNDLKRALQ 974 (1352)
Q Consensus 910 ~~~~~~d~~~a~~~~~~---i~~---~~~~~~a~fl~~~G~~e~Al~~~~d-------s~~~k--f~la~~~g~l~~a~~ 974 (1352)
.+...|++++|++.+.+ +.+ ..+..+++-+..+|-.++|+..... .+... .-..++.|+++.|.+
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~ 198 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHD 198 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHH
Confidence 45667999999887776 222 2367778888999999888764421 11111 112456788898888
Q ss_pred HHhhcccccccCCCCCCCCcccccccc-ccchhhhhhhhhh-------hhhHHHHHHHHHHHHHcCCHHH----HHHHHH
Q 000685 975 CLITMSNSRDIGQDHPGLDLNDILTLT-TKKENIVEAVQGI-------VKFAKEFLDLIDAADATGQANI----AREALK 1042 (1352)
Q Consensus 975 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-------~~~~~~w~~l~~~al~~g~~~~----A~~~~~ 1042 (1352)
.+..+-.....+.. ...-++... ....+..++..-+ -.....|..||......|+++. |+.+|+
T Consensus 199 ~~~~~l~~~~~~~~----~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 199 LARALLPFFALERQ----ESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHhcCCCcch----hHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 87443221111100 000000000 0111111111111 1123567778888888888885 788888
Q ss_pred HHHhcCCcccccccccchhhHHHHhccCChhHHHHHHHHHHHcCCcHH-HHHH---HH-HcCCHHHHHHHHHHc
Q 000685 1043 RLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGRE-AAFS---AA-ILGDNALMEKAWQDT 1111 (1352)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~-~af~---~~-~lgd~~~~~~~l~~~ 1111 (1352)
++-... +.-+. -+..|..+|...|+.+......+.+....-... +.+. ++ .+|+.+++++.|.+.
T Consensus 275 ~Al~l~-P~~~~---a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~a 344 (656)
T PRK15174 275 HALQFN-SDNVR---IVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQL 344 (656)
T ss_pred HHHhhC-CCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 874422 21111 123445677788888887777777776543311 1111 12 678888888877653
No 426
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=87.83 E-value=1.5 Score=45.44 Aligned_cols=26 Identities=27% Similarity=0.075 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000685 1019 KEFLDLIDAADATGQANIAREALKRL 1044 (1352)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~A~~~~~~~ 1044 (1352)
..|..+||.++++|+.+.|+.+|+++
T Consensus 119 ~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 119 LAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 56778999999999999999999975
No 427
>PRK12370 invasion protein regulator; Provisional
Probab=87.63 E-value=3.2 Score=52.97 Aligned_cols=43 Identities=12% Similarity=-0.055 Sum_probs=30.2
Q ss_pred HHHhcCCHHHHHHHHhh---cChh---hHHHHHHHHHhCCcchhhcccc
Q 000685 910 CLAAYGDSVSAVKWASR---LGRE---HHDDLAQFMLGMGYATEALHLP 952 (1352)
Q Consensus 910 ~~~~~~d~~~a~~~~~~---i~~~---~~~~~a~fl~~~G~~e~Al~~~ 952 (1352)
.+...|++++|++.+++ +.+. .|..++..+..+|.+++|+...
T Consensus 347 ~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 347 INTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 33467888888887766 3332 4777888888888888776554
No 428
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=87.40 E-value=79 Score=38.57 Aligned_cols=226 Identities=16% Similarity=0.086 Sum_probs=109.4
Q ss_pred EeccccceeEecccccCCCccccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeecCCCCeEEEE
Q 000685 59 LVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVI 138 (1352)
Q Consensus 59 ~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLas 138 (1352)
.++|++++++-+-... |. ....++++|+.+++.+..... . .....+.|.++++.++.+
T Consensus 130 ~~Spdg~~la~~~s~~----------G~------e~~~l~v~Dl~tg~~l~d~i~---~---~~~~~~~W~~d~~~~~y~ 187 (414)
T PF02897_consen 130 SVSPDGKRLAYSLSDG----------GS------EWYTLRVFDLETGKFLPDGIE---N---PKFSSVSWSDDGKGFFYT 187 (414)
T ss_dssp EETTTSSEEEEEEEET----------TS------SEEEEEEEETTTTEEEEEEEE---E---EESEEEEECTTSSEEEEE
T ss_pred eECCCCCEEEEEecCC----------CC------ceEEEEEEECCCCcCcCCccc---c---cccceEEEeCCCCEEEEE
Confidence 3457888777653221 12 235799999999866531111 1 111238999999867777
Q ss_pred EecCc-----------EEEEEeeCCccccccccccCCCC--eEEEEEeeccccCCCCEEEEEECC----CcEEEEECCCC
Q 000685 139 CCVNK-----------AIFLDLVTMRGRDIPKQELDNKS--LVCMEFLSRSAVGDVPLVAFGSSD----GVIRVLSMISW 201 (1352)
Q Consensus 139 gs~D~-----------~I~wDl~t~~~~~i~~~~~h~~~--V~~vaf~P~s~Spdg~~LasGs~D----GtIrIWDl~t~ 201 (1352)
..++. +.++.+.+........+...... ...+.. ++++++|+..+.. ..+.+.|+..+
T Consensus 188 ~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~-----s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 188 RFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSR-----SKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp ECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE------TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEe-----cCcccEEEEEEEccccCCeEEEEecccc
Confidence 65442 22445555443322233333332 456666 7899987765432 34788888764
Q ss_pred ----eEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEe---CCCcEEEEeCCCCCccceecccccccccccc--eEEEEee
Q 000685 202 ----KLVRRYTGGHKGSISCLMTFMASSGEALLVSGG---SDGLLILWSADHGQDSRELVPKLSLKAHDGG--VVAVELS 272 (1352)
Q Consensus 202 ----~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS---~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~--V~slafs 272 (1352)
.....+.....+....+. +.++.+++... ..+.|...++........ ...+..|... +..+...
T Consensus 263 ~~~~~~~~~l~~~~~~~~~~v~----~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~---~~~l~~~~~~~~l~~~~~~ 335 (414)
T PF02897_consen 263 GSPDAKPKLLSPREDGVEYYVD----HHGDRLYILTNDDAPNGRLVAVDLADPSPAEW---WTVLIPEDEDVSLEDVSLF 335 (414)
T ss_dssp TTSS-SEEEEEESSSS-EEEEE----EETTEEEEEE-TT-TT-EEEEEETTSTSGGGE---EEEEE--SSSEEEEEEEEE
T ss_pred CCCcCCcEEEeCCCCceEEEEE----ccCCEEEEeeCCCCCCcEEEEecccccccccc---eeEEcCCCCceeEEEEEEE
Confidence 223333312223333332 22444444332 245676677776553111 1124455553 4444443
Q ss_pred ccCCCCCEEEEEECCC--cEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCC
Q 000685 273 RVMGGSPQLITIGADK--TLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD 327 (1352)
Q Consensus 273 p~~~dg~~LaSgs~Dg--tV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~ 327 (1352)
.+.+++..-.++ .|++||+..+.....+.. .. .+.|..+...+++.
T Consensus 336 ----~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~----p~-~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 336 ----KDYLVLSYRENGSSRLRVYDLDDGKESREIPL----PE-AGSVSGVSGDFDSD 383 (414)
T ss_dssp ----TTEEEEEEEETTEEEEEEEETT-TEEEEEEES----SS-SSEEEEEES-TT-S
T ss_pred ----CCEEEEEEEECCccEEEEEECCCCcEEeeecC----Cc-ceEEeccCCCCCCC
Confidence 234555555554 578899883444343221 11 23344555555555
No 429
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.93 E-value=62 Score=37.54 Aligned_cols=168 Identities=9% Similarity=0.062 Sum_probs=94.4
Q ss_pred ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeccCccceEEec--cccceeEecccccCCCccccccC
Q 000685 7 FRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAMRG 84 (1352)
Q Consensus 7 L~gHs~~V~~lafSPdg~~LaTgs~DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~~l~~ 84 (1352)
+.|-...|.++.|+|+.+.|++......-.||=...|+.++++..........+. .++++.++-.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dE------------- 147 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDE------------- 147 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEeh-------------
Confidence 3455556999999999999999988888889988899999998743322222222 3344444332
Q ss_pred CceEEEEEcCCeEEEEEcCCcccccc------ccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEEEeeCCc-cccc
Q 000685 85 GSVKQVNFYDDDVRFWQLWRNRAAAA------EAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMR-GRDI 157 (1352)
Q Consensus 85 g~V~sVaF~Dg~IrlWDl~t~~~i~~------~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl~t~~-~~~i 157 (1352)
.++.+.++.+........ ........ +...-.++|.|..+.++++=-.+-+-++-+.... ...+
T Consensus 148 --------R~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~-N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~ 218 (316)
T COG3204 148 --------RDRALYLFTVDADTTVISAKVQKIPLGTTNKK-NKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSV 218 (316)
T ss_pred --------hcceEEEEEEcCCccEEeccceEEeccccCCC-CcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccc
Confidence 233333333332211110 01111111 4457889999988756555544444343322111 1111
Q ss_pred cccccC-------CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCC
Q 000685 158 PKQELD-------NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS 200 (1352)
Q Consensus 158 ~~~~~h-------~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t 200 (1352)
.....+ -..|..+.|++ ..+.+++-+..++.+.-.|...
T Consensus 219 ~~~~~~~~~~~~f~~DvSgl~~~~----~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 219 HASLDPTADRDLFVLDVSGLEFNA----ITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ccccCcccccceEeeccccceecC----CCCcEEEEecCCceEEEEecCC
Confidence 111111 23566777853 3567777787888887777653
No 430
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=86.73 E-value=4 Score=49.82 Aligned_cols=109 Identities=16% Similarity=0.006 Sum_probs=71.4
Q ss_pred hHHHhcCCHHHHHHHHhhcCh-----hhHHHH-HHHHHhCCcchhhcccc----cccCccE-------EEeecccccHHH
Q 000685 909 RCLAAYGDSVSAVKWASRLGR-----EHHDDL-AQFMLGMGYATEALHLP----GISKRLE-------FDLAMQSNDLKR 971 (1352)
Q Consensus 909 ~~~~~~~d~~~a~~~~~~i~~-----~~~~~~-a~fl~~~G~~e~Al~~~----~ds~~~k-------f~la~~~g~l~~ 971 (1352)
-.++..|||+.|.+.+..-+. ..++-+ |+.-..+|.++.|.+.. ...++.+ .+++++.|+.+.
T Consensus 92 l~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 92 LLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHH
Confidence 366778999999998887333 223444 44447888777665443 1112322 678899999999
Q ss_pred HHHHHhhcccccccCCCCCCCCccccccccccchhhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 000685 972 ALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAG 1048 (1352)
Q Consensus 972 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~A~~~~~~~~~~~ 1048 (1352)
|++.+..+... ..++. .-.+-+++..+.+|+.+-|.+-|.++...+
T Consensus 172 Al~~l~~~~~~-~P~~~------------------------------~al~ll~~~~~~~gdw~~a~~~l~~l~k~~ 217 (398)
T PRK10747 172 ARHGVDKLLEV-APRHP------------------------------EVLRLAEQAYIRTGAWSSLLDILPSMAKAH 217 (398)
T ss_pred HHHHHHHHHhc-CCCCH------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence 99988443222 11111 456667888899999999998888876443
No 431
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=86.28 E-value=19 Score=43.77 Aligned_cols=212 Identities=12% Similarity=0.103 Sum_probs=89.9
Q ss_pred CCCEEEEEE-CCCcEEEEECCC----CeEEEEEec--CCC-CCeeEEEEeeeCCCCCEEEEEeCC------CcEEEEeCC
Q 000685 180 DVPLVAFGS-SDGVIRVLSMIS----WKLVRRYTG--GHK-GSISCLMTFMASSGEALLVSGGSD------GLLILWSAD 245 (1352)
Q Consensus 180 dg~~LasGs-~DGtIrIWDl~t----~~~i~~l~~--gH~-~~V~slawf~~s~dg~~LaSgS~D------GtVrVWDl~ 245 (1352)
+.++|+..+ ..+.|.|+|+.+ -++.+.+.. -+. ..+..-..+..-++|++++|+-.| |-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456676666 778999999974 355555541 011 111111111234588888875332 346667766
Q ss_pred CCCccceecccccccccccceEEEEeeccCCCCCEEEEEEC--------------------CCcEEEEECCCCeEEEEec
Q 000685 246 HGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA--------------------DKTLAIWDTVSFKELRRIK 305 (1352)
Q Consensus 246 tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~--------------------DgtV~IWDl~tg~~l~~~~ 305 (1352)
+-+....+... .+...--+.+-|.| ..+.++|... ..++++||+.+.+.++++.
T Consensus 166 tf~v~g~We~~---~~~~~~gYDfw~qp---r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~id 239 (461)
T PF05694_consen 166 TFEVKGRWEKD---RGPQPFGYDFWYQP---RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTID 239 (461)
T ss_dssp T--EEEE--SB----TT------EEEET---TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEE
T ss_pred cccccceeccC---CCCCCCCCCeEEcC---CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEe
Confidence 55444433110 11122345677788 5677777653 3689999999999999875
Q ss_pred CCCcccccCCceeEEEeCCC--CC--EEEEecCCeEEeccCCccccc-ccCccccC-----CCCCCeEEecCC--cccEE
Q 000685 306 PVPKLACHSVASWCHPRAPN--LD--ILTCVKDSHIWAIEHPTYSAL-TRPLCELS-----SLVPPQVLAHHK--KLRVY 373 (1352)
Q Consensus 306 ~~~~l~~hs~~V~svafspd--g~--lLS~s~Dg~IWDi~t~~~~~~-~~~l~~~~-----~~~~~~~l~~h~--~~~V~ 373 (1352)
.. ........+.|..+ .. ++.+.-.+.||.+....-..- .+...++. +......+..-+ -.-|+
T Consensus 240 Lg----~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Lit 315 (461)
T PF05694_consen 240 LG----EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLIT 315 (461)
T ss_dssp S-----TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-----
T ss_pred cC----CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceE
Confidence 32 11122335666544 33 444444555665543110000 00000000 000000000000 01478
Q ss_pred EEEEecCCCcEEEEEECCCeEEEEecCCC
Q 000685 374 CMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1352)
Q Consensus 374 ~la~sp~~~~lLatGs~DG~IlriWd~~~ 402 (1352)
.|..|.++.++.+++-.+|-| |.||+..
T Consensus 316 DI~iSlDDrfLYvs~W~~Gdv-rqYDISD 343 (461)
T PF05694_consen 316 DILISLDDRFLYVSNWLHGDV-RQYDISD 343 (461)
T ss_dssp -EEE-TTS-EEEEEETTTTEE-EEEE-SS
T ss_pred eEEEccCCCEEEEEcccCCcE-EEEecCC
Confidence 899999888888888889997 8999875
No 432
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=85.92 E-value=4.8 Score=49.27 Aligned_cols=169 Identities=14% Similarity=-0.006 Sum_probs=101.0
Q ss_pred hHHHhcCCHHHHHHHHhhcCh------hhHHHHHHHHHhCCcchhhcccccc----cCcc-------EEEeecccccHHH
Q 000685 909 RCLAAYGDSVSAVKWASRLGR------EHHDDLAQFMLGMGYATEALHLPGI----SKRL-------EFDLAMQSNDLKR 971 (1352)
Q Consensus 909 ~~~~~~~d~~~a~~~~~~i~~------~~~~~~a~fl~~~G~~e~Al~~~~d----s~~~-------kf~la~~~g~l~~ 971 (1352)
..++..|||+.|.+.+.+..+ -.+--.|+....+|-.+.|.+.... .++. .-++.++.|+++.
T Consensus 92 lla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 92 LLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence 367778999999998877222 1234557888888988876665432 2333 2556677899999
Q ss_pred HHHHHhhcccccccCCCCCCCCccccccccccchhhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 000685 972 ALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVK 1051 (1352)
Q Consensus 972 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~~ 1051 (1352)
|++.+..+... ..++. .-+.-++...+.+|+.+-|++.+.++...+...
T Consensus 172 Al~~l~~l~~~-~P~~~------------------------------~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~ 220 (409)
T TIGR00540 172 ARHGVDKLLEM-APRHK------------------------------EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD 220 (409)
T ss_pred HHHHHHHHHHh-CCCCH------------------------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 99988544332 11111 567889999999999999999999996543111
Q ss_pred cccccccchhhH-HHH---h----ccCChhHHHHHHHHHHHc--CCcH-HHHHH-HH-HcCCHHHHHHHHHHcC
Q 000685 1052 GALQGHELRGLA-LRL---A----NHGELTRLSGLVTNLISL--GLGR-EAAFS-AA-ILGDNALMEKAWQDTG 1112 (1352)
Q Consensus 1052 ~~~~~~~~~~l~-ll~---~----~~g~~~~l~~l~~~a~~~--~~~~-~~af~-~~-~lgd~~~~~~~l~~~~ 1112 (1352)
..++..+. ..+ . ...+.+.|.++.+..-.+ ++.. ..++. .+ ..|+.+++++++.+.=
T Consensus 221 ----~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l 290 (409)
T TIGR00540 221 ----DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGL 290 (409)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 11122111 111 1 122334555443322211 2321 12222 22 8899999999887653
No 433
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=85.52 E-value=12 Score=48.73 Aligned_cols=80 Identities=18% Similarity=0.009 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcccccccccchhhHHHHhccCChhHHHHHHHHHHHcCCcHHHHHHHH--
Q 000685 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFSAA-- 1096 (1352)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~~af~~~-- 1096 (1352)
.-|..||+....+|+++-+-.|.-.++ +..-++.+-+..+++.+.+.|.+ +.|-.|+
T Consensus 174 ~ay~tL~~IyEqrGd~eK~l~~~llAA--------------------HL~p~d~e~W~~ladls~~~~~i-~qA~~cy~r 232 (895)
T KOG2076|consen 174 IAYYTLGEIYEQRGDIEKALNFWLLAA--------------------HLNPKDYELWKRLADLSEQLGNI-NQARYCYSR 232 (895)
T ss_pred hhHHHHHHHHHHcccHHHHHHHHHHHH--------------------hcCCCChHHHHHHHHHHHhcccH-HHHHHHHHH
Confidence 789999999999999988877776662 33678889999999999999999 7666655
Q ss_pred ---HcCC----HHHHHHHHHHcCCcHHHHH
Q 000685 1097 ---ILGD----NALMEKAWQDTGMLAEAVL 1119 (1352)
Q Consensus 1097 ---~lgd----~~~~~~~l~~~~~~~~A~~ 1119 (1352)
+.++ +-++..+++++|.++.|+.
T Consensus 233 AI~~~p~n~~~~~ers~L~~~~G~~~~Am~ 262 (895)
T KOG2076|consen 233 AIQANPSNWELIYERSSLYQKTGDLKRAME 262 (895)
T ss_pred HHhcCCcchHHHHHHHHHHHHhChHHHHHH
Confidence 4444 4578899999999999983
No 434
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=85.31 E-value=4.7 Score=47.06 Aligned_cols=168 Identities=17% Similarity=0.131 Sum_probs=92.2
Q ss_pred cChhhhhhhHHHhcCCHHHHHHHHhh---cChhhHHHHHHHHHhCCcchhhcc----cccccCccEEE---------eec
Q 000685 901 LSHPGIRCRCLAAYGDSVSAVKWASR---LGREHHDDLAQFMLGMGYATEALH----LPGISKRLEFD---------LAM 964 (1352)
Q Consensus 901 l~~~~~~f~~~~~~~d~~~a~~~~~~---i~~~~~~~~a~fl~~~G~~e~Al~----~~~ds~~~kf~---------la~ 964 (1352)
+....+.|++.+..|.++.+..-+.. -+-.-...+|.|+...+-.|.++. ...+ .....+ +-+
T Consensus 35 ~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~-~~~~~~~~~~~~~A~i~~ 113 (290)
T PF04733_consen 35 LERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLAD-QAGESNEIVQLLAATILF 113 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCT-S---CHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHh-ccccccHHHHHHHHHHHH
Confidence 33457889999999999887654432 111225678999988666666653 2233 222111 223
Q ss_pred ccccHHHHHHHHhhcccccccCCCCCCCCccccccccccchhhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000685 965 QSNDLKRALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRL 1044 (1352)
Q Consensus 965 ~~g~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~A~~~~~~~ 1044 (1352)
..|+++.|++++ ++.+.. ..---+.+.+|..+++++|++-+++.
T Consensus 114 ~~~~~~~AL~~l------~~~~~l------------------------------E~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 114 HEGDYEEALKLL------HKGGSL------------------------------ELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CCCHHHHHHCCC------TTTTCH------------------------------HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HcCCHHHHHHHH------HccCcc------------------------------cHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 457777777776 222111 22233578999999999999999999
Q ss_pred HhcCCcccccccccchhhH--HHHhccCC--hhHHHHHHHHHHHc-CCcH---HHHHHHH-HcCCHHHHHHHHHHc
Q 000685 1045 AAAGSVKGALQGHELRGLA--LRLANHGE--LTRLSGLVTNLISL-GLGR---EAAFSAA-ILGDNALMEKAWQDT 1111 (1352)
Q Consensus 1045 ~~~~~~~~~~~~~~~~~l~--ll~~~~g~--~~~l~~l~~~a~~~-~~~~---~~af~~~-~lgd~~~~~~~l~~~ 1111 (1352)
+++.+ .+. +-.|+ .+....|+ ...--..-+....+ |... |.-..|. .+|+++++.++|.+.
T Consensus 158 ~~~~e--D~~----l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~a 227 (290)
T PF04733_consen 158 QQIDE--DSI----LTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEA 227 (290)
T ss_dssp HCCSC--CHH----HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HhcCC--cHH----HHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 87763 111 11121 23334443 33333333333333 3331 2222344 899999999998873
No 435
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=85.25 E-value=6.2 Score=55.07 Aligned_cols=89 Identities=25% Similarity=0.277 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcccccccccchhhHHHHhccCChhHHHHHHHHHHHcCCc----HHHH--
Q 000685 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLG----REAA-- 1092 (1352)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~----~~~a-- 1092 (1352)
.-|..|+......|+.+.|+++|+++-... +... .-...+..+|...|+.++...+.+.+...... ++.|
T Consensus 638 ~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~---~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~ 713 (1157)
T PRK11447 638 DARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSL---NTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALV 713 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCCh---HHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHH
Confidence 567888999999999999999999874321 0000 01234556777889988888888877764311 0111
Q ss_pred H-----HHHHcCCHHHHHHHHHHc
Q 000685 1093 F-----SAAILGDNALMEKAWQDT 1111 (1352)
Q Consensus 1093 f-----~~~~lgd~~~~~~~l~~~ 1111 (1352)
+ .....|+.+++++.|.+.
T Consensus 714 ~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 714 LRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 122678888888888765
No 436
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=85.17 E-value=13 Score=47.98 Aligned_cols=114 Identities=15% Similarity=0.106 Sum_probs=73.8
Q ss_pred CCceEEEEEcCCeEEEEEcCCccc--------------cccccccccccCCCCeeeeeec--CCCCeEEEEEecCcEE-E
Q 000685 84 GGSVKQVNFYDDDVRFWQLWRNRA--------------AAAEAPTAVSNVTSGFASPPPS--TKGRHFLVICCVNKAI-F 146 (1352)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~t~~~--------------i~~~~~~~~~~~~~~V~slafs--pdg~~lLasgs~D~~I-~ 146 (1352)
+..|..++.+||.|.+|.+.+--. .....+.........+++++++ ...+ ++|+++....| +
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~r-lIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSR-LIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcce-EEEEecCCceEEE
Confidence 478888888999999997632100 0011123344446689999998 6554 88888888877 4
Q ss_pred E--EeeCCccccccccccCCCCeEEEEEeeccccCCCC-EEEEEECCCcEEEEECC
Q 000685 147 L--DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVP-LVAFGSSDGVIRVLSMI 199 (1352)
Q Consensus 147 w--Dl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~-~LasGs~DGtIrIWDl~ 199 (1352)
+ .....+..... ...+..-|-||.|.+....++|. +|++++-.|.+.+|++.
T Consensus 192 Faf~l~~~r~~~~~-s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 192 FAFALVDERFYHVP-SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEEecccccccccc-ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 4 33222211111 22367789999998864444554 78888899999998873
No 437
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=85.11 E-value=28 Score=38.24 Aligned_cols=175 Identities=14% Similarity=0.087 Sum_probs=95.5
Q ss_pred CCCEEEEEeC--CCcEEEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCCceEEEEEcCCeEEE
Q 000685 22 THPWLVTADA--SDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRF 99 (1352)
Q Consensus 22 dg~~LaTgs~--DG~VrVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~sVaF~Dg~Irl 99 (1352)
+|.++.+.+. ...|++||+.+|+.+.+-.... + +.+..|. +-.+..++.+.|.+|.-..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~-~---------~~FgEGi---------t~~gd~~y~LTw~egvaf~ 115 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP-D---------TVFGEGI---------TKLGDYFYQLTWKEGVAFK 115 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCC-c---------cccccce---------eeccceEEEEEeccceeEE
Confidence 4556666554 3579999999999887665321 1 1121211 1124688999999999999
Q ss_pred EEcCCccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEE-EeeCCccccccccccCC---CCeEEEEEeec
Q 000685 100 WQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDN---KSLVCMEFLSR 175 (1352)
Q Consensus 100 WDl~t~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~w-Dl~t~~~~~i~~~~~h~---~~V~~vaf~P~ 175 (1352)
+|..+.+++. .... .+.=+.++ .|++. |..+.....+.| |..+............. ..++.+.|.
T Consensus 116 ~d~~t~~~lg----~~~y--~GeGWgLt--~d~~~-LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-- 184 (262)
T COG3823 116 YDADTLEELG----RFSY--EGEGWGLT--SDDKN-LIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-- 184 (262)
T ss_pred EChHHhhhhc----cccc--CCcceeee--cCCcc-eEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--
Confidence 9999887762 1111 11112222 34443 333444445555 77665322111112222 234456663
Q ss_pred cccCCCCEEEEEECCCcEEEEECCCCeEEEEEe-----------cCCCCCeeEEEEeeeCCCC-CEEEEE
Q 000685 176 SAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYT-----------GGHKGSISCLMTFMASSGE-ALLVSG 233 (1352)
Q Consensus 176 s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~-----------~gH~~~V~slawf~~s~dg-~~LaSg 233 (1352)
+|...+-.-.+..|...|..+|+.+..+. ..|.+-.+.++ +.+++ +++++|
T Consensus 185 ----dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA---~~~~~~r~~iTG 247 (262)
T COG3823 185 ----DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIA---HDPQQDRFLITG 247 (262)
T ss_pred ----ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCcccccccccccee---ecCcCCeEEEec
Confidence 66666666566667777778887766552 12444556665 44444 455554
No 438
>PRK13616 lipoprotein LpqB; Provisional
Probab=84.95 E-value=64 Score=41.62 Aligned_cols=72 Identities=18% Similarity=0.170 Sum_probs=42.6
Q ss_pred CCCeEEEEEeeccccCCCCEEEEEECCCcEEE---EECCCCeE-E---EEEecCCCCCeeEEEEeeeCCCCCEEEEEeCC
Q 000685 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRV---LSMISWKL-V---RRYTGGHKGSISCLMTFMASSGEALLVSGGSD 236 (1352)
Q Consensus 164 ~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrI---WDl~t~~~-i---~~l~~gH~~~V~slawf~~s~dg~~LaSgS~D 236 (1352)
...|..+.| |+||..++... +|.|.+ -....+.. + ..+..+-...+.++.|. .++. |+.+..+
T Consensus 447 ~g~Issl~w-----SpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~---~~~~-L~V~~~~ 516 (591)
T PRK13616 447 PGPISELQL-----SRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWR---TGDS-LVVGRSD 516 (591)
T ss_pred CCCcCeEEE-----CCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEe---cCCE-EEEEecC
Confidence 457999999 88999988876 477776 34334431 1 11222333445778764 4444 4455555
Q ss_pred CcEEEEeCC
Q 000685 237 GLLILWSAD 245 (1352)
Q Consensus 237 GtVrVWDl~ 245 (1352)
+...+|.+.
T Consensus 517 ~~~~v~~v~ 525 (591)
T PRK13616 517 PEHPVWYVN 525 (591)
T ss_pred CCCceEEEe
Confidence 555566554
No 439
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=84.80 E-value=94 Score=37.01 Aligned_cols=79 Identities=9% Similarity=0.019 Sum_probs=44.2
Q ss_pred ccccccccceEEEEeeccCC----CCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEE-EE
Q 000685 257 LSLKAHDGGVVAVELSRVMG----GSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TC 331 (1352)
Q Consensus 257 ~~l~gH~~~V~slafsp~~~----dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lL-S~ 331 (1352)
..+..| ..+..+.|..... .+.++++.-..+.|...++..+..+..... -+......+..+++.|||.+. +.
T Consensus 247 ~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~r~~~v~~~pDG~Lyv~~ 323 (331)
T PF07995_consen 247 FAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEE--FLGGFGGRPRDVAQGPDGALYVSD 323 (331)
T ss_dssp EEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE--ECTTSSS-EEEEEEETTSEEEEEE
T ss_pred eeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEE--ccccCCCCceEEEEcCCCeEEEEE
Confidence 334434 5577778775110 345666666667888777765543322111 123444578899999999865 44
Q ss_pred ecCCeEE
Q 000685 332 VKDSHIW 338 (1352)
Q Consensus 332 s~Dg~IW 338 (1352)
..+|+||
T Consensus 324 d~~G~iy 330 (331)
T PF07995_consen 324 DSDGKIY 330 (331)
T ss_dssp -TTTTEE
T ss_pred CCCCeEe
Confidence 5677787
No 440
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=84.63 E-value=2.2 Score=35.57 Aligned_cols=34 Identities=26% Similarity=0.679 Sum_probs=29.3
Q ss_pred CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeE
Q 000685 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKL 203 (1352)
Q Consensus 164 ~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~ 203 (1352)
...|.++.| +|..++|+.|+.||.|.++.+ +++.
T Consensus 11 ~~~v~~~~w-----~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSW-----CPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEE-----CCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999 778999999999999999998 4543
No 441
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=84.62 E-value=13 Score=47.61 Aligned_cols=105 Identities=13% Similarity=0.259 Sum_probs=68.7
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECC--------
Q 000685 225 SGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV-------- 296 (1352)
Q Consensus 225 ~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~-------- 296 (1352)
.-+..-+.-+...++.|||.+.+....+ ..+ ...+.|..+.|... ++++.+++.|-.+.|.+|--.
T Consensus 39 s~~k~a~V~~~~~~LtIWD~~~~~lE~~----~~f-~~~~~I~dLDWtst-~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~ 112 (631)
T PF12234_consen 39 SIKKIAVVDSSRSELTIWDTRSGVLEYE----ESF-SEDDPIRDLDWTST-PDGQSILAVGFPHHVLLYTQLRYDYTNKG 112 (631)
T ss_pred ccCcEEEEECCCCEEEEEEcCCcEEEEe----eee-cCCCceeeceeeec-CCCCEEEEEEcCcEEEEEEccchhhhcCC
Confidence 3444444445556799999998764322 122 34677999999875 578899999999999998432
Q ss_pred -CCeEEEEecCCCcccccC-CceeEEEeCCCCCEEEEecCC-eEEe
Q 000685 297 -SFKELRRIKPVPKLACHS-VASWCHPRAPNLDILTCVKDS-HIWA 339 (1352)
Q Consensus 297 -tg~~l~~~~~~~~l~~hs-~~V~svafspdg~lLS~s~Dg-~IWD 339 (1352)
+...++.+. +..|+ ..|....|.++|.++.++... .|+|
T Consensus 113 p~w~~i~~i~----i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~d 154 (631)
T PF12234_consen 113 PSWAPIRKID----ISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFD 154 (631)
T ss_pred cccceeEEEE----eecCCCCCccceeEecCCeEEEEeCCEEEEEC
Confidence 122333332 23444 467789999999888766544 3554
No 442
>PRK12370 invasion protein regulator; Provisional
Probab=84.46 E-value=9 Score=48.97 Aligned_cols=88 Identities=10% Similarity=-0.081 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcccccccccchhhHHHHhccCChhHHHHHHHHHHHcCCcHH-H----HH
Q 000685 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGRE-A----AF 1093 (1352)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~-~----af 1093 (1352)
.-|..||.....+|+++.|+.+|+++-..+ +.-+. -+..|..+|...|+.+......+.|....-... . +.
T Consensus 339 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~---a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~ 414 (553)
T PRK12370 339 QALGLLGLINTIHSEYIVGSLLFKQANLLS-PISAD---IKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLW 414 (553)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 556667777777777777777777763322 22111 122344566667777666666666555432201 1 11
Q ss_pred HHHHcCCHHHHHHHHHH
Q 000685 1094 SAAILGDNALMEKAWQD 1110 (1352)
Q Consensus 1094 ~~~~lgd~~~~~~~l~~ 1110 (1352)
..+.+|+.+++++.+.+
T Consensus 415 ~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 415 ITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHhccCHHHHHHHHHH
Confidence 12256777766666544
No 443
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=84.38 E-value=14 Score=48.16 Aligned_cols=88 Identities=19% Similarity=0.017 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcccccccccchhhHHHHhccCChhHHHHHHHHHHHcCCcHHHHHH----
Q 000685 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFS---- 1094 (1352)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~~af~---- 1094 (1352)
.-|..||.....+|+++.|..+|+++-... +.-+. -...|..+|...|+.+......+.+....-....++.
T Consensus 285 ~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~---a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~ 360 (656)
T PRK15174 285 RIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPY---VRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAA 360 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 678889999999999999999999885422 21111 1223456788899998877777766654332111121
Q ss_pred HH-HcCCHHHHHHHHHH
Q 000685 1095 AA-ILGDNALMEKAWQD 1110 (1352)
Q Consensus 1095 ~~-~lgd~~~~~~~l~~ 1110 (1352)
++ .+|+.+++++.|.+
T Consensus 361 al~~~G~~deA~~~l~~ 377 (656)
T PRK15174 361 ALLQAGKTSEAESVFEH 377 (656)
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 23 88999999999876
No 444
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=83.99 E-value=3.2 Score=45.88 Aligned_cols=103 Identities=18% Similarity=0.189 Sum_probs=59.4
Q ss_pred EEEEEecCcEE-EEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCC-
Q 000685 135 FLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHK- 212 (1352)
Q Consensus 135 lLasgs~D~~I-~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~- 212 (1352)
-+++|+.++.+ .|++... .............|-|+.-. -.++.+..+++.||.||.|+..-++.+...- .|+
T Consensus 72 ~~~vG~~dg~v~~~n~n~~-g~~~d~~~s~~e~i~~~Ip~----~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g-~h~~ 145 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLE-GAHSDRVCSGEESIDLGIPN----GRDSSLGCVGAQDGRIRACNIKPNKVLGYVG-QHNF 145 (238)
T ss_pred eEEeecccceEEEecCCcc-chHHHhhhcccccceecccc----ccccceeEEeccCCceeeeccccCceeeeec-cccC
Confidence 57777778877 5544311 00000112223344443221 2345688999999999999998887776654 565
Q ss_pred CCeeEEEEeeeCCCCCEEEEE--eCCCcEEEEeCCC
Q 000685 213 GSISCLMTFMASSGEALLVSG--GSDGLLILWSADH 246 (1352)
Q Consensus 213 ~~V~slawf~~s~dg~~LaSg--S~DGtVrVWDl~t 246 (1352)
.++.... ....+.+++++ |.|..++.|++..
T Consensus 146 ~~~e~~i---vv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 146 ESGEELI---VVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCcceeE---EecCCceEEeeccccchhhhhcchhh
Confidence 3333332 34455566666 6666667776653
No 445
>PRK13616 lipoprotein LpqB; Provisional
Probab=83.81 E-value=31 Score=44.43 Aligned_cols=151 Identities=13% Similarity=0.026 Sum_probs=84.5
Q ss_pred CCCeEEEEEeeccccCCCCEEEEEE------CCC--cEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeC
Q 000685 164 NKSLVCMEFLSRSAVGDVPLVAFGS------SDG--VIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS 235 (1352)
Q Consensus 164 ~~~V~~vaf~P~s~Spdg~~LasGs------~DG--tIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~ 235 (1352)
...+...++ +++|+.++... .|. .|.+++.. +.. ..+..+. ....-. ++++|..|.+.+.
T Consensus 349 ~~~vsspai-----SpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~--~~t~Ps---WspDG~~lw~v~d 416 (591)
T PRK13616 349 MGNITSAAL-----SRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGH--SLTRPS---WSLDADAVWVVVD 416 (591)
T ss_pred ccCcccceE-----CCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCC--CCCCce---ECCCCCceEEEec
Confidence 346777888 78999887665 244 45555542 222 3333233 244454 5788777766653
Q ss_pred C------------CcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEE---EECCCCeE
Q 000685 236 D------------GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAI---WDTVSFKE 300 (1352)
Q Consensus 236 D------------GtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~I---WDl~tg~~ 300 (1352)
. +.+.+.+++.+... ....+.|..+.|+| ||..|+... +++|.+ -....|.
T Consensus 417 g~~~~~v~~~~~~gql~~~~vd~ge~~---------~~~~g~Issl~wSp---DG~RiA~i~-~g~v~Va~Vvr~~~G~- 482 (591)
T PRK13616 417 GNTVVRVIRDPATGQLARTPVDASAVA---------SRVPGPISELQLSR---DGVRAAMII-GGKVYLAVVEQTEDGQ- 482 (591)
T ss_pred CcceEEEeccCCCceEEEEeccCchhh---------hccCCCcCeEEECC---CCCEEEEEE-CCEEEEEEEEeCCCCc-
Confidence 3 22222233322210 02355799999999 788777665 477777 4544554
Q ss_pred EEEecCCCccc-ccCCceeEEEeCCCCCEEEEecCC--eEEecc
Q 000685 301 LRRIKPVPKLA-CHSVASWCHPRAPNLDILTCVKDS--HIWAIE 341 (1352)
Q Consensus 301 l~~~~~~~~l~-~hs~~V~svafspdg~lLS~s~Dg--~IWDi~ 341 (1352)
.++.....+. +-...+.++.|..++.++.+..++ .+|.+.
T Consensus 483 -~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 483 -YALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVN 525 (591)
T ss_pred -eeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEe
Confidence 2221111122 222335688999999977655443 377765
No 446
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=83.40 E-value=14 Score=45.10 Aligned_cols=122 Identities=14% Similarity=0.131 Sum_probs=73.9
Q ss_pred CeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEE-----------------------------------------
Q 000685 166 SLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLV----------------------------------------- 204 (1352)
Q Consensus 166 ~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i----------------------------------------- 204 (1352)
.|+++.| +++..-|++|...|.|.||.+...+..
T Consensus 3 ~v~~vs~-----a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~ 77 (395)
T PF08596_consen 3 SVTHVSF-----APETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFL 77 (395)
T ss_dssp -EEEEEE-----ETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEE
T ss_pred eEEEEEe-----cCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccC
Confidence 4677778 567777888888888888876422110
Q ss_pred -EEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccc--cccccccceEEEEeecc--CCCC-
Q 000685 205 -RRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKL--SLKAHDGGVVAVELSRV--MGGS- 278 (1352)
Q Consensus 205 -~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~--~l~gH~~~V~slafsp~--~~dg- 278 (1352)
..+.....+.|++++ .+ +=-+++.|..+|++.|.|++....+..-.... .-......|+++.|... .+|+
T Consensus 78 P~~l~~~~~g~vtal~---~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 78 PLTLLDAKQGPVTALK---NS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEE---S-SEEEEE---E--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred chhheeccCCcEeEEe---cC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 011123467788886 44 55699999999999999998776554311111 11223456888888742 1233
Q ss_pred --CEEEEEECCCcEEEEECC
Q 000685 279 --PQLITIGADKTLAIWDTV 296 (1352)
Q Consensus 279 --~~LaSgs~DgtV~IWDl~ 296 (1352)
-.|++|...|.+.+|.+.
T Consensus 154 SSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEE
T ss_pred cceEEEEEeCCCCEEEEEEe
Confidence 478889999999999864
No 447
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=83.14 E-value=1e+02 Score=40.73 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=20.1
Q ss_pred CCeEEEEEeeccccCCCCEEEEEECCCcEEEEEC
Q 000685 165 KSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSM 198 (1352)
Q Consensus 165 ~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl 198 (1352)
-.|..|.. +++|.+++..+..|.+ |-.+
T Consensus 85 f~v~~i~~-----n~~g~~lal~G~~~v~-V~~L 112 (717)
T PF10168_consen 85 FEVHQISL-----NPTGSLLALVGPRGVV-VLEL 112 (717)
T ss_pred eeEEEEEE-----CCCCCEEEEEcCCcEE-EEEe
Confidence 36777888 7899999888876644 4333
No 448
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=82.95 E-value=35 Score=41.65 Aligned_cols=106 Identities=12% Similarity=0.059 Sum_probs=52.8
Q ss_pred CCcEEEEECCCCeEEEEEecCCCC-CeeEEEEeeeCCCCC-EEEEEeCCCcEEEEeC-CCCCccce----eccc------
Q 000685 190 DGVIRVLSMISWKLVRRYTGGHKG-SISCLMTFMASSGEA-LLVSGGSDGLLILWSA-DHGQDSRE----LVPK------ 256 (1352)
Q Consensus 190 DGtIrIWDl~t~~~i~~l~~gH~~-~V~slawf~~s~dg~-~LaSgS~DGtVrVWDl-~tg~~~~~----~~~~------ 256 (1352)
..++.+||+.+.+.++++.-+..+ ...-+.|. ..|+.. -|+.+....+|-.|-- ..++...+ +...
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRfl-H~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~ 299 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFL-HDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI 299 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE--SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEec-CCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence 457999999999999998755444 34456533 455544 4555556666665543 33332111 0000
Q ss_pred -----ccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCC
Q 000685 257 -----LSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSF 298 (1352)
Q Consensus 257 -----~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg 298 (1352)
..+..-..-|+.|..|. +|..+.+++-.+|.|+.||+..-
T Consensus 300 lp~ml~~~~~~P~LitDI~iSl--DDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 300 LPEMLKPFGAVPPLITDILISL--DDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp --GGGGGG-EE------EEE-T--TS-EEEEEETTTTEEEEEE-SST
T ss_pred ccccccccccCCCceEeEEEcc--CCCEEEEEcccCCcEEEEecCCC
Confidence 00111134578899998 34444456667999999999863
No 449
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=82.88 E-value=1.3e+02 Score=39.27 Aligned_cols=34 Identities=9% Similarity=0.205 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHh--hhcCCCCcchhhHHHHHHhccC
Q 000685 1130 KNLVEAWNKMLQ--KEVDHTPTAKTDAAAAFLASLE 1163 (1352)
Q Consensus 1130 ~~~~~~w~~~l~--~~~~~~~~~~~~~~~~~~~~~~ 1163 (1352)
..+-..|+-.|+ +++.-.|..++-.=+.+|..+.
T Consensus 322 ~~l~~~~q~~l~~~~~l~~a~~~~~~~Em~llrl~~ 357 (709)
T PRK08691 322 EQIQLYYQIAVHGKRDLSLAPDEYAGFMMTLLRMLA 357 (709)
T ss_pred HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Confidence 344445554443 4556688888888888888776
No 450
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=82.08 E-value=20 Score=44.76 Aligned_cols=102 Identities=9% Similarity=0.027 Sum_probs=56.2
Q ss_pred cCCeEEEEEcCC-----ccccccccccccccCCCCeeeeeecCCCCeEEEEEecCcEEEEEeeCCccccccccccCCCCe
Q 000685 93 YDDDVRFWQLWR-----NRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSL 167 (1352)
Q Consensus 93 ~Dg~IrlWDl~t-----~~~i~~~~~~~~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl~t~~~~~i~~~~~h~~~V 167 (1352)
+...|.+|.+.. ++.+............---.++.|+|...-+.+....|-.|..+...... .++.-....+.|
T Consensus 80 HkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s-rVkaDi~~~G~I 158 (671)
T PF15390_consen 80 HKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS-RVKADIKTSGLI 158 (671)
T ss_pred ccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc-eEEEeccCCceE
Confidence 578899998752 22221111111111111223677999987444444555556556554332 222233457899
Q ss_pred EEEEEeeccccCCCCEEEEEEC-CCcEEEEECCC
Q 000685 168 VCMEFLSRSAVGDVPLVAFGSS-DGVIRVLSMIS 200 (1352)
Q Consensus 168 ~~vaf~P~s~Spdg~~LasGs~-DGtIrIWDl~t 200 (1352)
.|.+| ..||+.|+++-. .=.-+|||-..
T Consensus 159 hCACW-----T~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 159 HCACW-----TKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEEEe-----cCcCCEEEEEeCCeEEEEEecCch
Confidence 99999 779988776533 23456788543
No 451
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=81.56 E-value=14 Score=44.81 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Q 000685 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSV 1050 (1352)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~ 1050 (1352)
.+|..||+-..+.++.+.|++||+++=.++++
T Consensus 433 Rlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 433 RLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 89999999999999999999999999666643
No 452
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=81.15 E-value=0.85 Score=52.57 Aligned_cols=141 Identities=18% Similarity=0.169 Sum_probs=24.3
Q ss_pred HHHHHHHHhCCcchhhccccc-c------cCcc-----EEEeecccccHHHHHHHHhhcccccccCCCCCCCCccccccc
Q 000685 933 DDLAQFMLGMGYATEALHLPG-I------SKRL-----EFDLAMQSNDLKRALQCLITMSNSRDIGQDHPGLDLNDILTL 1000 (1352)
Q Consensus 933 ~~~a~fl~~~G~~e~Al~~~~-d------s~~~-----kf~la~~~g~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1000 (1352)
..+|+-+-..|-+++||.+.. . ..+. .-+||..+++.+.|.++-..+-..... ..
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~------------ 78 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NP------------ 78 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc------------
Confidence 355666777777777777662 1 0111 226677777777777766333222111 01
Q ss_pred cccchhhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCcccccccccchhhHHHHhccCChhHHHHHH
Q 000685 1001 TTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAA-AGSVKGALQGHELRGLALRLANHGELTRLSGLV 1079 (1352)
Q Consensus 1001 ~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~ 1079 (1352)
.-..+|+.. +..++.+.|.+.+.+.-. +++. . -+..++-+|...|+.+++..+.
T Consensus 79 ------------------~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~---~---~l~~~l~~~~~~~~~~~~~~~l 133 (280)
T PF13429_consen 79 ------------------QDYERLIQL-LQDGDPEEALKLAEKAYERDGDP---R---YLLSALQLYYRLGDYDEAEELL 133 (280)
T ss_dssp ----------------------------------------------------------------H-HHHTT-HHHHHHHH
T ss_pred ------------------ccccccccc-ccccccccccccccccccccccc---c---hhhHHHHHHHHHhHHHHHHHHH
Confidence 345556666 566666666544433200 0211 1 1223334566677777777777
Q ss_pred HHHHHcCCcH-HHH-HHH----H-HcCCHHHHHHHHHHc
Q 000685 1080 TNLISLGLGR-EAA-FSA----A-ILGDNALMEKAWQDT 1111 (1352)
Q Consensus 1080 ~~a~~~~~~~-~~a-f~~----~-~lgd~~~~~~~l~~~ 1111 (1352)
+.+....... +.. |.. + ..|+.+++++.|.+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 134 EKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp HHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7665444110 111 111 1 567777777776553
No 453
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=80.96 E-value=0.79 Score=58.42 Aligned_cols=131 Identities=15% Similarity=0.165 Sum_probs=80.6
Q ss_pred CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEe--------eeCCCCCEEEEEeC
Q 000685 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTF--------MASSGEALLVSGGS 235 (1352)
Q Consensus 164 ~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf--------~~s~dg~~LaSgS~ 235 (1352)
..++.-|.|.|. -++.-++..+-.+++|++.++.+... ..+. +|...+..+++| ..++||..|+.++.
T Consensus 180 gs~~~~V~wcp~--~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~r-sHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~ 255 (1283)
T KOG1916|consen 180 GSDPQLVSWCPI--AVNKVYICYGLKGGEIRLLNINRALR-SLFR-SHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAIS 255 (1283)
T ss_pred CCCcceeeeccc--ccccceeeeccCCCceeEeeechHHH-HHHH-hcCCCcccHHHHhhchhhheeeCCCCcEEEEeec
Confidence 456677778663 34557788888999999988765322 2233 687777766532 36899999999999
Q ss_pred CCcEEEEeCC-CCCccceecccccccccccc--eEEEEeeccC----CC--CCEEEEEEC-CCcEEEEECCCCeEE
Q 000685 236 DGLLILWSAD-HGQDSRELVPKLSLKAHDGG--VVAVELSRVM----GG--SPQLITIGA-DKTLAIWDTVSFKEL 301 (1352)
Q Consensus 236 DGtVrVWDl~-tg~~~~~~~~~~~l~gH~~~--V~slafsp~~----~d--g~~LaSgs~-DgtV~IWDl~tg~~l 301 (1352)
||.+++|.+. +|+.... +...++.|++. |.++ |+... +- -.+++++++ ++.+++|....++|+
T Consensus 256 dG~v~f~Qiyi~g~~~~r--clhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 256 DGSVGFYQIYITGKIVHR--CLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCccceeeeeeeccccHh--hhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 9999999764 2222111 12234556532 3333 33210 00 124455554 567999998888776
No 454
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=80.69 E-value=1.7e+02 Score=37.08 Aligned_cols=151 Identities=12% Similarity=0.091 Sum_probs=81.0
Q ss_pred CceEEEEEcCCe-EEEEEc--CCccccccccccccccCCCCeeeeeecCC----CCeEEEEEecCcEEEEEee--CCc-c
Q 000685 85 GSVKQVNFYDDD-VRFWQL--WRNRAAAAEAPTAVSNVTSGFASPPPSTK----GRHFLVICCVNKAIFLDLV--TMR-G 154 (1352)
Q Consensus 85 g~V~sVaF~Dg~-IrlWDl--~t~~~i~~~~~~~~~~~~~~V~slafspd----g~~lLasgs~D~~I~wDl~--t~~-~ 154 (1352)
.++.+++|.||. |.+=++ ..++.. .......+. ..-|.++.|.|- .+.+|++-....+.+|-+. ..+ .
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~k-fGds~viGq-FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~ 97 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPK-FGDSKVIGQ-FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERN 97 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccc-cCCccEeec-cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccc
Confidence 578888887764 444443 223211 111222232 334889999885 4457887777777789543 211 1
Q ss_pred ccccccccC---CC--CeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCC--eEEEEEecCCCCCeeEEEEeeeCCCC
Q 000685 155 RDIPKQELD---NK--SLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW--KLVRRYTGGHKGSISCLMTFMASSGE 227 (1352)
Q Consensus 155 ~~i~~~~~h---~~--~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~--~~i~~l~~gH~~~V~slawf~~s~dg 227 (1352)
+.+.....+ .- -.....|| |....|++-.....=.+++++.. +....+ ...+.|.|.+| .+||
T Consensus 98 K~l~sQtcEi~e~~pvLpQGCVWH-----Pk~~iL~VLT~~dvSV~~sV~~d~srVkaDi--~~~G~IhCACW---T~DG 167 (671)
T PF15390_consen 98 KLLMSQTCEIREPFPVLPQGCVWH-----PKKAILTVLTARDVSVLPSVHCDSSRVKADI--KTSGLIHCACW---TKDG 167 (671)
T ss_pred cceeeeeeeccCCcccCCCccccc-----CCCceEEEEecCceeEeeeeeeCCceEEEec--cCCceEEEEEe---cCcC
Confidence 111111111 11 12345685 46666666554444346666532 332333 46788999996 5688
Q ss_pred CEEEEE-eCCCcEEEEeCCCC
Q 000685 228 ALLVSG-GSDGLLILWSADHG 247 (1352)
Q Consensus 228 ~~LaSg-S~DGtVrVWDl~tg 247 (1352)
+.|+.+ +..=.-.+||-...
T Consensus 168 ~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred CEEEEEeCCeEEEEEecCchh
Confidence 776654 33334568886543
No 455
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.63 E-value=14 Score=45.12 Aligned_cols=96 Identities=15% Similarity=0.120 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc------ccccccccchhhHHHHhccCChhHHHHHHHHHHHcCCcHHHH
Q 000685 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSV------KGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAA 1092 (1352)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~~a 1092 (1352)
..+.-.++.-.-+++|+-|++-|.++.+.... .-|.+.|. .| ++.-=.+|+..-.+|.+.|.+-.--+..|
T Consensus 463 Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~K--a~-l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A 539 (606)
T KOG0547|consen 463 EVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHK--AL-LVLQWKEDINQAENLLRKAIELDPKCEQA 539 (606)
T ss_pred hHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhh--hH-hhhchhhhHHHHHHHHHHHHccCchHHHH
Confidence 34455588889999999999999999765543 34454442 22 23335699999999999998877666778
Q ss_pred HHHH-----HcCCHHHHHHHHHHcCCcHHHHHHHHH
Q 000685 1093 FSAA-----ILGDNALMEKAWQDTGMLAEAVLHAHA 1123 (1352)
Q Consensus 1093 f~~~-----~lgd~~~~~~~l~~~~~~~~A~~~A~t 1123 (1352)
+..+ ..|+++++|+++.+ |+.+|||
T Consensus 540 ~~tlaq~~lQ~~~i~eAielFEk------sa~lArt 569 (606)
T KOG0547|consen 540 YETLAQFELQRGKIDEAIELFEK------SAQLART 569 (606)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH------HHHHHHh
Confidence 7744 78999999998864 5566665
No 456
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.55 E-value=1.9e+02 Score=37.51 Aligned_cols=23 Identities=4% Similarity=-0.191 Sum_probs=12.3
Q ss_pred HHHHHcCCCchHHHHHHHHHHHh
Q 000685 1119 LHAHAHGRPSLKNLVEAWNKMLQ 1141 (1352)
Q Consensus 1119 ~~A~t~~~~~~~~~~~~w~~~l~ 1141 (1352)
..|+.+..+.+..+++.+.+...
T Consensus 318 ~~A~~~s~~~L~~~l~~il~~~~ 340 (624)
T PRK14959 318 GWAKRFEPAHIHACWQMTLEGQR 340 (624)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHH
Confidence 34566665555555555554433
No 457
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=80.46 E-value=11 Score=42.59 Aligned_cols=87 Identities=18% Similarity=0.122 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcccccccccchhhHHHHhccCChhHHHHHHHHHHHcCCcH-----HHHH
Q 000685 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGR-----EAAF 1093 (1352)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~-----~~af 1093 (1352)
+-|..||-..++.|+++.|+..|.++-++. ..+.. =+..|..+|...||++..+.+..-+...+... |.||
T Consensus 135 ~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~---~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl 210 (257)
T COG5010 135 EAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPS---IANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLAL 210 (257)
T ss_pred hhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCch---hhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 789999999999999999999999985533 22222 35677889999999999999999998887631 3344
Q ss_pred HHHHcCCHHHHHHHHH
Q 000685 1094 SAAILGDNALMEKAWQ 1109 (1352)
Q Consensus 1094 ~~~~lgd~~~~~~~l~ 1109 (1352)
..-..||..++.++-.
T Consensus 211 ~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 211 VVGLQGDFREAEDIAV 226 (257)
T ss_pred HHhhcCChHHHHhhcc
Confidence 4337888888877654
No 458
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=79.92 E-value=20 Score=37.06 Aligned_cols=28 Identities=7% Similarity=-0.072 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000685 1019 KEFLDLIDAADATGQANIAREALKRLAA 1046 (1352)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~A~~~~~~~~~ 1046 (1352)
.-|..||......|+++.|..||+++-.
T Consensus 59 ~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 59 RAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 7889999999999999999999998843
No 459
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=78.81 E-value=79 Score=32.61 Aligned_cols=114 Identities=16% Similarity=0.197 Sum_probs=72.1
Q ss_pred cCCCCEEEEEECCCcEEEEECCCC--------eEEEEEecCCCCCeeEEEEeee--CCCCCEEEEEeCCCcEEEEeCCCC
Q 000685 178 VGDVPLVAFGSSDGVIRVLSMISW--------KLVRRYTGGHKGSISCLMTFMA--SSGEALLVSGGSDGLLILWSADHG 247 (1352)
Q Consensus 178 Spdg~~LasGs~DGtIrIWDl~t~--------~~i~~l~~gH~~~V~slawf~~--s~dg~~LaSgS~DGtVrVWDl~tg 247 (1352)
....+-|+.++.-|+|.|++.... ..+..+ .-...|++++.-.+ ..+.+.|+.|+ ...+..||+...
T Consensus 7 DG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L--Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N 83 (136)
T PF14781_consen 7 DGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL--NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENN 83 (136)
T ss_pred CCCceeEEEEecCCEEEEECCCccccccccccCceeEE--ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccC
Confidence 445567888889999999987632 233333 35667888863223 23456677665 557889999887
Q ss_pred CccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEE
Q 000685 248 QDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKEL 301 (1352)
Q Consensus 248 ~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l 301 (1352)
..+. .+.-.++|+++.+-...+...-++..+.+..|.-||....+..
T Consensus 84 ~d~F-------yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 84 SDLF-------YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred chhh-------hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence 6543 3455688999988653222344455555678888886644433
No 460
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=78.20 E-value=1.3e+02 Score=37.37 Aligned_cols=114 Identities=15% Similarity=0.165 Sum_probs=59.2
Q ss_pred CCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCcc--ceecccccccccccceEEEEeeccC---CCCCEEEEEE-C
Q 000685 213 GSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDS--RELVPKLSLKAHDGGVVAVELSRVM---GGSPQLITIG-A 286 (1352)
Q Consensus 213 ~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~--~~~~~~~~l~gH~~~V~slafsp~~---~dg~~LaSgs-~ 286 (1352)
..-+.|. +.|++++|++--..|+|++++-.++... ..+ +......-.++...|+++|.. ....+|.... .
T Consensus 30 ~~Pw~ma---flPDG~llVtER~~G~I~~v~~~~~~~~~~~~l-~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~ 105 (454)
T TIGR03606 30 NKPWALL---WGPDNQLWVTERATGKILRVNPETGEVKVVFTL-PEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTY 105 (454)
T ss_pred CCceEEE---EcCCCeEEEEEecCCEEEEEeCCCCceeeeecC-CceeccCCCCceeeEEECCCccccCCCcEEEEEEec
Confidence 3445565 6789988887655799999986554321 111 111111136779999999942 2223343321 1
Q ss_pred ---------CCcEEEEECCCC--e---EEEEecCCCcccccCCceeEEEeCCCCCEE-EEe
Q 000685 287 ---------DKTLAIWDTVSF--K---ELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCV 332 (1352)
Q Consensus 287 ---------DgtV~IWDl~tg--~---~l~~~~~~~~l~~hs~~V~svafspdg~lL-S~s 332 (1352)
...|.-|.+... . ....+.....-..|... .+.|.|||.|. +.|
T Consensus 106 ~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~Gg--rI~FgPDG~LYVs~G 164 (454)
T TIGR03606 106 KNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGG--RLVFGPDGKIYYTIG 164 (454)
T ss_pred cCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCc--eEEECCCCcEEEEEC
Confidence 233444554321 1 11112111122346554 78899999855 444
No 461
>PHA03098 kelch-like protein; Provisional
Probab=78.13 E-value=82 Score=39.96 Aligned_cols=65 Identities=11% Similarity=0.152 Sum_probs=35.2
Q ss_pred CCCEEEEEECC--------CcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCC-----CcEEEEeCCC
Q 000685 180 DVPLVAFGSSD--------GVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSD-----GLLILWSADH 246 (1352)
Q Consensus 180 dg~~LasGs~D--------GtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~D-----GtVrVWDl~t 246 (1352)
++...+.|+.+ ..+.+||..+++....-...+...-.+++ .-++.+++.|+.+ +.|.+||..+
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~----~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLC----IFNNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEE----EECCEEEEEcCCcCCcccceeEEEeCCC
Confidence 56666777643 23888998875543221101111112222 1166777777754 4678888876
Q ss_pred CC
Q 000685 247 GQ 248 (1352)
Q Consensus 247 g~ 248 (1352)
.+
T Consensus 513 ~~ 514 (534)
T PHA03098 513 NT 514 (534)
T ss_pred CE
Confidence 54
No 462
>PHA03098 kelch-like protein; Provisional
Probab=77.95 E-value=56 Score=41.46 Aligned_cols=145 Identities=14% Similarity=0.099 Sum_probs=70.4
Q ss_pred EEEEEecC-------cEEEEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECC-----CcEEEEECCCCe
Q 000685 135 FLVICCVN-------KAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSD-----GVIRVLSMISWK 202 (1352)
Q Consensus 135 lLasgs~D-------~~I~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~D-----GtIrIWDl~t~~ 202 (1352)
+++.|+.+ .+.++|..+.+...+............+.+ ++.+++.|+.+ ..+..||..+++
T Consensus 297 lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~-------~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 297 IYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF-------NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred EEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE-------CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 66666533 223557666554333222212222333333 57777888765 357788887654
Q ss_pred EEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCC------CcEEEEeCCCCCccceecccccccccccceEEEEeeccCC
Q 000685 203 LVRRYTGGHKGSISCLMTFMASSGEALLVSGGSD------GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMG 276 (1352)
Q Consensus 203 ~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~D------GtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~ 276 (1352)
....-.-.+...-.++. .-++.+.+.|+.+ +.+..||..+++.... ..+....... ++...
T Consensus 370 W~~~~~lp~~r~~~~~~----~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~----~~~p~~r~~~-~~~~~---- 436 (534)
T PHA03098 370 WREEPPLIFPRYNPCVV----NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG----SPLPISHYGG-CAIYH---- 436 (534)
T ss_pred eeeCCCcCcCCccceEE----EECCEEEEECCcCCCCcccceEEEEeCCCCeeeec----CCCCccccCc-eEEEE----
Confidence 32211101111112222 2256777777742 4578899887653221 1111111111 22222
Q ss_pred CCCEEEEEECC--------CcEEEEECCCCe
Q 000685 277 GSPQLITIGAD--------KTLAIWDTVSFK 299 (1352)
Q Consensus 277 dg~~LaSgs~D--------gtV~IWDl~tg~ 299 (1352)
++.+++.||.+ ..+.+||..+.+
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred CCEEEEECCccCCCCCcccceEEEecCCCCc
Confidence 45667777643 237888887654
No 463
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=77.61 E-value=7.8 Score=46.32 Aligned_cols=89 Identities=12% Similarity=0.004 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcccccccccchhhHHHHhc-------cCChhHHHHHHHHHHHc-CCcHH
Q 000685 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLAN-------HGELTRLSGLVTNLISL-GLGRE 1090 (1352)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~-------~g~~~~l~~l~~~a~~~-~~~~~ 1090 (1352)
+.|+.=|+.+-++|++..|.+||..+=+ +..+...-++.||.+ +|....--.--++|.+- -.+ -
T Consensus 250 e~~k~~gN~~fk~G~y~~A~E~Yteal~-------idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy-i 321 (486)
T KOG0550|consen 250 EVKKERGNDAFKNGNYRKAYECYTEALN-------IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY-I 321 (486)
T ss_pred HHHHhhhhhHhhccchhHHHHHHHHhhc-------CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH-H
Confidence 7899999999999999999999998833 223344445555554 33332222221222221 122 2
Q ss_pred HHHH----HH-HcCCHHHHHHHHHHcCCcH
Q 000685 1091 AAFS----AA-ILGDNALMEKAWQDTGMLA 1115 (1352)
Q Consensus 1091 ~af~----~~-~lgd~~~~~~~l~~~~~~~ 1115 (1352)
-|++ |. .|++.+++|+-+.++.+..
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2222 33 7888888888887766543
No 464
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=77.52 E-value=2.5e+02 Score=37.52 Aligned_cols=30 Identities=7% Similarity=0.027 Sum_probs=25.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEecc
Q 000685 23 HPWLVTADASDHVSVWNWEHRQVIYELKAG 52 (1352)
Q Consensus 23 g~~LaTgs~DG~VrVWDl~tg~~i~t~~~~ 52 (1352)
+..|+.++.++.|.-.|..||+.+.++...
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~ 223 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPK 223 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCC
Confidence 557778888899999999999999988743
No 465
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=77.38 E-value=1.5e+02 Score=36.13 Aligned_cols=205 Identities=12% Similarity=0.049 Sum_probs=97.4
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCE--EEEEe-CC---CcEEEEeCCCCC-cc
Q 000685 178 VGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEAL--LVSGG-SD---GLLILWSADHGQ-DS 250 (1352)
Q Consensus 178 Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~--LaSgS-~D---GtVrVWDl~tg~-~~ 250 (1352)
+|...+|+....++-+.+||+. |+.+..+..+.-+.| .+. .-+.-+++. |+.++ .+ .+|++|.+.... .+
T Consensus 65 dp~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr~NNV-Dvr-ygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L 141 (381)
T PF02333_consen 65 DPAKSLIIGTDKKGGLYVYDLD-GKELQSLPVGRPNNV-DVR-YGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL 141 (381)
T ss_dssp -GGG-EEEEEETTTEEEEEETT-S-EEEEE-SS-EEEE-EEE-EEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE
T ss_pred CcccceEEEEeCCCCEEEEcCC-CcEEEeecCCCccee-eee-cceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcc
Confidence 4556778888888889999987 555666643433333 221 112223332 33443 22 579999886321 12
Q ss_pred ceecc-cccccccccceEEEEeeccCCCC-CEEEEEECCCcEEEEECC---CC----eEEEEecCCCcccccCCceeEEE
Q 000685 251 RELVP-KLSLKAHDGGVVAVELSRVMGGS-PQLITIGADKTLAIWDTV---SF----KELRRIKPVPKLACHSVASWCHP 321 (1352)
Q Consensus 251 ~~~~~-~~~l~gH~~~V~slafsp~~~dg-~~LaSgs~DgtV~IWDl~---tg----~~l~~~~~~~~l~~hs~~V~sva 321 (1352)
..+.. ...+..--..++.+|+.....++ -+.+..+.+|.+..|.+. .+ +.+++|... ..+-.+.
T Consensus 142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~-------sQ~EGCV 214 (381)
T PF02333_consen 142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG-------SQPEGCV 214 (381)
T ss_dssp EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S-------S-EEEEE
T ss_pred eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC-------CcceEEE
Confidence 11100 00111112347788875422234 467778889998888764 33 356665321 2344566
Q ss_pred eCCCCCEE-EEecCCeEEeccCCcccccccCccccCCCCCCeEEec-CCcccEEEEEEec---CCCcEEEEEECCCeEEE
Q 000685 322 RAPNLDIL-TCVKDSHIWAIEHPTYSALTRPLCELSSLVPPQVLAH-HKKLRVYCMVAHS---LQPHLVATGTNVGVIIS 396 (1352)
Q Consensus 322 fspdg~lL-S~s~Dg~IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~-h~~~~V~~la~sp---~~~~lLatGs~DG~Ilr 396 (1352)
.......| .+=++.-||.+.-.........+. ....+ +-...|-.|+.-. ..+++|++.-.++.. .
T Consensus 215 VDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v--------~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf-~ 285 (381)
T PF02333_consen 215 VDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLV--------ASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSF-A 285 (381)
T ss_dssp EETTTTEEEEEETTTEEEEEESSCCC-S--EEE--------EEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEE-E
T ss_pred EecccCCEEEecCccEEEEEecCCCCCCcceee--------ecccccccccCccceEEEecCCCCeEEEEEcCCCCeE-E
Confidence 66554444 555555699875321100111111 00111 1112455565542 135667777667765 5
Q ss_pred EecCC
Q 000685 397 EFDPR 401 (1352)
Q Consensus 397 iWd~~ 401 (1352)
+|+..
T Consensus 286 Vy~r~ 290 (381)
T PF02333_consen 286 VYDRE 290 (381)
T ss_dssp EEESS
T ss_pred EEecC
Confidence 77643
No 466
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=77.05 E-value=12 Score=48.89 Aligned_cols=42 Identities=7% Similarity=-0.255 Sum_probs=28.4
Q ss_pred HHHhcCCHHHHHHHHhh---cChhh---HHHHHHHHHhCCcchhhccc
Q 000685 910 CLAAYGDSVSAVKWASR---LGREH---HDDLAQFMLGMGYATEALHL 951 (1352)
Q Consensus 910 ~~~~~~d~~~a~~~~~~---i~~~~---~~~~a~fl~~~G~~e~Al~~ 951 (1352)
.+...|.+|+|.+++++ +.+++ +-..|.-|.++++.|+||..
T Consensus 95 i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~ 142 (694)
T PRK15179 95 ALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAE 142 (694)
T ss_pred HHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHH
Confidence 44556888888888877 34444 45566777777777777654
No 467
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=76.92 E-value=1.1e+02 Score=36.57 Aligned_cols=110 Identities=10% Similarity=0.065 Sum_probs=54.2
Q ss_pred eEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceeccc-ccccccccceEEEEeeccCCCCCEE-EEEECC------
Q 000685 216 SCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPK-LSLKAHDGGVVAVELSRVMGGSPQL-ITIGAD------ 287 (1352)
Q Consensus 216 ~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~-~~l~gH~~~V~slafsp~~~dg~~L-aSgs~D------ 287 (1352)
+.|+ +.|++++|++ ...|.|++++ ..+.....+... ........+...++++|......+| ++.+..
T Consensus 5 ~~~a---~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 5 RSMA---FLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp EEEE---EETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred eEEE---EeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 4555 6788888776 5599999999 444331111111 1234456678999999932223333 333321
Q ss_pred --CcEEEEECCCC--e-----EEEEecCCCcccccCCceeEEEeCCCCCEE-EEe
Q 000685 288 --KTLAIWDTVSF--K-----ELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCV 332 (1352)
Q Consensus 288 --gtV~IWDl~tg--~-----~l~~~~~~~~l~~hs~~V~svafspdg~lL-S~s 332 (1352)
..|.-|.+..+ . .+....+......|.. ..+.|.|||.+. +.|
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g--~~l~fgpDG~LYvs~G 132 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNG--GGLAFGPDGKLYVSVG 132 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-E--EEEEE-TTSEEEEEEB
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCC--ccccCCCCCcEEEEeC
Confidence 23444444433 1 1111111111233433 379999999854 444
No 468
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.73 E-value=34 Score=45.71 Aligned_cols=137 Identities=11% Similarity=-0.064 Sum_probs=80.9
Q ss_pred CCCCEEEE--EECCCcEEEEECCCCeE--------EEEEecC--CCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCC
Q 000685 179 GDVPLVAF--GSSDGVIRVLSMISWKL--------VRRYTGG--HKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH 246 (1352)
Q Consensus 179 pdg~~Las--Gs~DGtIrIWDl~t~~~--------i~~l~~g--H~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~t 246 (1352)
+|+...++ .+.+-.|..||+++... ++.-..+ ......++.|. +.-....+.+..|+.|++..+..
T Consensus 110 ~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wn--P~vp~n~av~l~dlsl~V~~~~~ 187 (1405)
T KOG3630|consen 110 HDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWN--PLVPLNSAVDLSDLSLRVKSTKQ 187 (1405)
T ss_pred cCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhcccccccccccc--CCccchhhhhccccchhhhhhhh
Confidence 46554333 33444788899975321 1111111 22344555553 22234566778899999887754
Q ss_pred CCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCC
Q 000685 247 GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNL 326 (1352)
Q Consensus 247 g~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg 326 (1352)
...... -..-...+++++|+| .|..++.|-..|++.-|... ++....+.+..... ...|.+|.|-...
T Consensus 188 ~~~~v~------s~p~t~~~Tav~WSp---rGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e--~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 188 LAQNVT------SFPVTNSQTAVLWSP---RGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEE--NYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhc------ccCcccceeeEEecc---ccceeeEecCCCeEEEeecc-cceeecccCCCcCC--CcceeEEEEecce
Confidence 322111 012334589999999 79999999999999988744 44444443332222 4678899998776
Q ss_pred CEE
Q 000685 327 DIL 329 (1352)
Q Consensus 327 ~lL 329 (1352)
.++
T Consensus 256 efl 258 (1405)
T KOG3630|consen 256 EFL 258 (1405)
T ss_pred eEE
Confidence 655
No 469
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=76.37 E-value=2.6 Score=54.06 Aligned_cols=121 Identities=9% Similarity=0.022 Sum_probs=79.5
Q ss_pred cccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECC--CCeE----EEEEecCCCCCeeEEEEeeeCCCCCEEEEE
Q 000685 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI--SWKL----VRRYTGGHKGSISCLMTFMASSGEALLVSG 233 (1352)
Q Consensus 160 ~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~--t~~~----i~~l~~gH~~~V~slawf~~s~dg~~LaSg 233 (1352)
.++-.+.|..+.|- +.+...+. -.-|.+.+||+. .|+. +.+....-..++.-+.|+.+-++.-++..+
T Consensus 128 ~kgf~G~v~dl~fa----h~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~ 201 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFA----HTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYG 201 (1283)
T ss_pred HhcCCCCccccccc----ccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeec
Confidence 34556778888882 22333332 234678899885 3332 222222445666777798788888889999
Q ss_pred eCCCcEEEEeCCCCCccceecccccccccccceEEEEe-----------eccCCCCCEEEEEECCCcEEEEECC
Q 000685 234 GSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVEL-----------SRVMGGSPQLITIGADKTLAIWDTV 296 (1352)
Q Consensus 234 S~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slaf-----------sp~~~dg~~LaSgs~DgtV~IWDl~ 296 (1352)
-.+++|++..+++... . -+.+|..++..++| +| ||..++.++.||.+++|-+.
T Consensus 202 ~~~~~i~lL~~~ra~~--~-----l~rsHs~~~~d~a~~~~g~~~l~~lSp---DGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 202 LKGGEIRLLNINRALR--S-----LFRSHSQRVTDMAFFAEGVLKLASLSP---DGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred cCCCceeEeeechHHH--H-----HHHhcCCCcccHHHHhhchhhheeeCC---CCcEEEEeecCCccceeeee
Confidence 9999999987765432 1 14557766665544 55 78888888888888888653
No 470
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=76.30 E-value=93 Score=41.57 Aligned_cols=45 Identities=11% Similarity=-0.014 Sum_probs=32.3
Q ss_pred hHHHhcCCHHHHHHHHhhcC------hhhHHHHHHHHHhCCcchhhccccc
Q 000685 909 RCLAAYGDSVSAVKWASRLG------REHHDDLAQFMLGMGYATEALHLPG 953 (1352)
Q Consensus 909 ~~~~~~~d~~~a~~~~~~i~------~~~~~~~a~fl~~~G~~e~Al~~~~ 953 (1352)
+.+.-.|+.++|+++..... ..-+..+|..+..+|..++|+.+..
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~ 73 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQ 73 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 46667799999988776622 2226778888888888888876543
No 471
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=75.95 E-value=2.8e+02 Score=37.06 Aligned_cols=124 Identities=12% Similarity=0.098 Sum_probs=73.6
Q ss_pred CCEEEEEECCCcEEEEECCCCeEEEEEecCCC-CC------eeEEEEeeeC--------------CCCCEEEEEeCCCcE
Q 000685 181 VPLVAFGSSDGVIRVLSMISWKLVRRYTGGHK-GS------ISCLMTFMAS--------------SGEALLVSGGSDGLL 239 (1352)
Q Consensus 181 g~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~-~~------V~slawf~~s--------------~dg~~LaSgS~DGtV 239 (1352)
+..++.++.++.|.-.|..+++.+-++..... .. ...+..+ .. .++..++.++.|+.+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~-~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYY-DAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEe-cCCcccccccccccccccCCEEEEecCCCeE
Confidence 56788888899999999999988877641111 00 1122211 11 134578888999999
Q ss_pred EEEeCCCCCccceeccccc--cc----ccccceEEEEeeccCCCCCEEEEEEC----------CCcEEEEECCCCeEEEE
Q 000685 240 ILWSADHGQDSRELVPKLS--LK----AHDGGVVAVELSRVMGGSPQLITIGA----------DKTLAIWDTVSFKELRR 303 (1352)
Q Consensus 240 rVWDl~tg~~~~~~~~~~~--l~----gH~~~V~slafsp~~~dg~~LaSgs~----------DgtV~IWDl~tg~~l~~ 303 (1352)
.-.|.++|+.+..+...-. +. .+...-..+.-.|.- .+..++.|+. +|.|+-+|..+|+.+.+
T Consensus 273 iALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V-~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 273 IALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLV-AGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEE-ECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 9999999987654311100 00 011000111111211 1235555643 68899999999999888
Q ss_pred ecC
Q 000685 304 IKP 306 (1352)
Q Consensus 304 ~~~ 306 (1352)
+..
T Consensus 352 ~~~ 354 (764)
T TIGR03074 352 WDP 354 (764)
T ss_pred Eec
Confidence 753
No 472
>PHA02790 Kelch-like protein; Provisional
Probab=75.02 E-value=89 Score=39.25 Aligned_cols=141 Identities=13% Similarity=0.019 Sum_probs=69.4
Q ss_pred eEEEEEecCc------EEEEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECC--CcEEEEECCCCeEEE
Q 000685 134 HFLVICCVNK------AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSD--GVIRVLSMISWKLVR 205 (1352)
Q Consensus 134 ~lLasgs~D~------~I~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~D--GtIrIWDl~t~~~i~ 205 (1352)
.++++|+.++ ..++|..+.+...+............+.. ++.+.+.|+.+ .++..||..+++...
T Consensus 273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~-------~~~iYviGG~~~~~sve~ydp~~n~W~~ 345 (480)
T PHA02790 273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPA-------NNKLYVVGGLPNPTSVERWFHGDAAWVN 345 (480)
T ss_pred EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEE-------CCEEEEECCcCCCCceEEEECCCCeEEE
Confidence 3667776432 22457666543333222212222222333 67777777754 358888877654322
Q ss_pred --EEecCCCCCeeEEEEeeeCCCCCEEEEEeCCC---cEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCE
Q 000685 206 --RYTGGHKGSISCLMTFMASSGEALLVSGGSDG---LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQ 280 (1352)
Q Consensus 206 --~l~~gH~~~V~slawf~~s~dg~~LaSgS~DG---tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~ 280 (1352)
.+. +...-.++. .-++.+.+.|+.++ .+..||..+.+.... +. +.........+.+ ++.+
T Consensus 346 ~~~l~--~~r~~~~~~----~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~--~~--m~~~r~~~~~~~~-----~~~I 410 (480)
T PHA02790 346 MPSLL--KPRCNPAVA----SINNVIYVIGGHSETDTTTEYLLPNHDQWQFG--PS--TYYPHYKSCALVF-----GRRL 410 (480)
T ss_pred CCCCC--CCCcccEEE----EECCEEEEecCcCCCCccEEEEeCCCCEEEeC--CC--CCCccccceEEEE-----CCEE
Confidence 221 111111221 22677888887654 477888876653221 11 1111111222222 4566
Q ss_pred EEEEECCCcEEEEECCCCe
Q 000685 281 LITIGADKTLAIWDTVSFK 299 (1352)
Q Consensus 281 LaSgs~DgtV~IWDl~tg~ 299 (1352)
.+.|+ .+.+||..+.+
T Consensus 411 Yv~GG---~~e~ydp~~~~ 426 (480)
T PHA02790 411 FLVGR---NAEFYCESSNT 426 (480)
T ss_pred EEECC---ceEEecCCCCc
Confidence 66664 57788887643
No 473
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=74.83 E-value=1.5e+02 Score=33.36 Aligned_cols=102 Identities=13% Similarity=0.044 Sum_probs=66.9
Q ss_pred eeeeeecCCCCeEEEEEecCcEE-EEE--eeCCcccc---cccccc----CCCCeEEEEEeeccccCCCCEEEEEECCCc
Q 000685 123 FASPPPSTKGRHFLVICCVNKAI-FLD--LVTMRGRD---IPKQEL----DNKSLVCMEFLSRSAVGDVPLVAFGSSDGV 192 (1352)
Q Consensus 123 V~slafspdg~~lLasgs~D~~I-~wD--l~t~~~~~---i~~~~~----h~~~V~~vaf~P~s~Spdg~~LasGs~DGt 192 (1352)
-+.++|+.+.+.+..+-+.+..+ -|| ..++.... +...+. ..-..-.++. ..+|.+.+++-..++
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~I-----D~eG~L~Va~~ng~~ 234 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTI-----DTEGNLYVATFNGGT 234 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceE-----ccCCcEEEEEecCcE
Confidence 35678888888788888888877 565 45554221 100110 1112223444 457888999999999
Q ss_pred EEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEE
Q 000685 193 IRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVS 232 (1352)
Q Consensus 193 IrIWDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaS 232 (1352)
|...|..+|+.+..+. --...|+|++ | --++-..|.+
T Consensus 235 V~~~dp~tGK~L~eik-lPt~qitscc-F-gGkn~d~~yv 271 (310)
T KOG4499|consen 235 VQKVDPTTGKILLEIK-LPTPQITSCC-F-GGKNLDILYV 271 (310)
T ss_pred EEEECCCCCcEEEEEE-cCCCceEEEE-e-cCCCccEEEE
Confidence 9999999999999887 4578899997 2 4444444443
No 474
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=74.68 E-value=8.6 Score=48.92 Aligned_cols=162 Identities=15% Similarity=0.038 Sum_probs=113.1
Q ss_pred hcCCHHHHHHHHhh-c--Chhh--HHHHHHHHHhCCcchhhcccccccCccE----E-EeecccccHHHHHHHHhhcccc
Q 000685 913 AYGDSVSAVKWASR-L--GREH--HDDLAQFMLGMGYATEALHLPGISKRLE----F-DLAMQSNDLKRALQCLITMSNS 982 (1352)
Q Consensus 913 ~~~d~~~a~~~~~~-i--~~~~--~~~~a~fl~~~G~~e~Al~~~~ds~~~k----f-~la~~~g~l~~a~~~~~~~~~~ 982 (1352)
.-|+..+|.+++.+ + ++.+ |-.+..|+...-++|.|.++..+ ...| | -+.+..++++.|.+..+- +-.
T Consensus 436 ~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~-~sarA~r~~~~~~~~~~~fs~~~~hle~-sl~ 513 (777)
T KOG1128|consen 436 LLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNY-ISARAQRSLALLILSNKDFSEADKHLER-SLE 513 (777)
T ss_pred HhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhh-hhHHHHHhhccccccchhHHHHHHHHHH-Hhh
Confidence 44677888887766 2 2332 66677899999999999999877 4554 2 234455889988887621 111
Q ss_pred cccCCCCCCCCccccccccccchhhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcccccccccchhh
Q 000685 983 RDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGL 1062 (1352)
Q Consensus 983 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 1062 (1352)
....+. .-|-.+|-.|++.++.+.|.+||.++=. .++..+. .++.|
T Consensus 514 ~nplq~------------------------------~~wf~~G~~ALqlek~q~av~aF~rcvt-L~Pd~~e---aWnNl 559 (777)
T KOG1128|consen 514 INPLQL------------------------------GTWFGLGCAALQLEKEQAAVKAFHRCVT-LEPDNAE---AWNNL 559 (777)
T ss_pred cCccch------------------------------hHHHhccHHHHHHhhhHHHHHHHHHHhh-cCCCchh---hhhhh
Confidence 111122 7899999999999999999999999843 5555555 66777
Q ss_pred HHHHhccCChhHHHHHHHHHHHcC--CcHHHH--HH--HHHcCCHHHHHHHHHHc
Q 000685 1063 ALRLANHGELTRLSGLVTNLISLG--LGREAA--FS--AAILGDNALMEKAWQDT 1111 (1352)
Q Consensus 1063 ~ll~~~~g~~~~l~~l~~~a~~~~--~~~~~a--f~--~~~lgd~~~~~~~l~~~ 1111 (1352)
+-.|...|...+--...+.|.+-+ +| ++= |. +--.|..+++++++++-
T Consensus 560 s~ayi~~~~k~ra~~~l~EAlKcn~~~w-~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 560 STAYIRLKKKKRAFRKLKEALKCNYQHW-QIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred hHHHHHHhhhHHHHHHHHHHhhcCCCCC-eeeechhhhhhhcccHHHHHHHHHHH
Confidence 778999999999888888888755 22 211 11 22677777777777654
No 475
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=74.03 E-value=10 Score=39.37 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000685 1019 KEFLDLIDAADATGQANIAREALKRL 1044 (1352)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~A~~~~~~~ 1044 (1352)
..|..+|......|+++.|.++|+++
T Consensus 93 ~a~~~lg~~l~~~g~~~eAi~~~~~A 118 (144)
T PRK15359 93 EPVYQTGVCLKMMGEPGLAREAFQTA 118 (144)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 78999999999999999999999998
No 476
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.02 E-value=1.5e+02 Score=36.42 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=10.2
Q ss_pred HcCCHHHHHHHHHHH
Q 000685 1030 ATGQANIAREALKRL 1044 (1352)
Q Consensus 1030 ~~g~~~~A~~~~~~~ 1044 (1352)
+.-.++.|++-|..+
T Consensus 162 AeeEl~~Aq~~fE~l 176 (460)
T KOG3771|consen 162 AEEELEKAQQVFEEL 176 (460)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445677777777766
No 477
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=72.88 E-value=6.6 Score=29.29 Aligned_cols=26 Identities=19% Similarity=0.101 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000685 1019 KEFLDLIDAADATGQANIAREALKRL 1044 (1352)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~A~~~~~~~ 1044 (1352)
+.|..||.....+|+++.|.+||+++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 67999999999999999999999988
No 478
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=72.82 E-value=21 Score=41.73 Aligned_cols=123 Identities=22% Similarity=0.158 Sum_probs=78.4
Q ss_pred CCHHHHHHHHhh----cChhhHHHHHHHHHhCCcchhhcccccccCccEEEeecccccHHHHHHHHhhcccccccCCCCC
Q 000685 915 GDSVSAVKWASR----LGREHHDDLAQFMLGMGYATEALHLPGISKRLEFDLAMQSNDLKRALQCLITMSNSRDIGQDHP 990 (1352)
Q Consensus 915 ~d~~~a~~~~~~----i~~~~~~~~a~fl~~~G~~e~Al~~~~ds~~~kf~la~~~g~l~~a~~~~~~~~~~~~~~~~~~ 990 (1352)
+||++|++.+++ -++.+.-.||+|. =|.|.+....+ +++.|.+.+ ++.=+.
T Consensus 155 reW~KAId~A~~L~k~~~q~~~~eIAqfy-----CELAq~~~~~~------------~~d~A~~~l------~kAlqa-- 209 (389)
T COG2956 155 REWEKAIDVAERLVKLGGQTYRVEIAQFY-----CELAQQALASS------------DVDRARELL------KKALQA-- 209 (389)
T ss_pred hHHHHHHHHHHHHHHcCCccchhHHHHHH-----HHHHHHHhhhh------------hHHHHHHHH------HHHHhh--
Confidence 889999988876 3666777788884 45566654442 455565555 111000
Q ss_pred CCCccccccccccchhhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcccccccccchhhHHHHhccC
Q 000685 991 GLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHG 1070 (1352)
Q Consensus 991 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g 1070 (1352)
|.. -..-=..||+.++.+|+++-|.++|.+...-+ .+++..-+..|.-.|...|
T Consensus 210 ---------------~~~--------cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn---~~yl~evl~~L~~~Y~~lg 263 (389)
T COG2956 210 ---------------DKK--------CVRASIILGRVELAKGDYQKAVEALERVLEQN---PEYLSEVLEMLYECYAQLG 263 (389)
T ss_pred ---------------Ccc--------ceehhhhhhHHHHhccchHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHhC
Confidence 000 00223458999999999999999999985422 3333334445555788888
Q ss_pred ChhHHHHHHHHHHHcCCc
Q 000685 1071 ELTRLSGLVTNLISLGLG 1088 (1352)
Q Consensus 1071 ~~~~l~~l~~~a~~~~~~ 1088 (1352)
..+....-...+.....+
T Consensus 264 ~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 264 KPAEGLNFLRRAMETNTG 281 (389)
T ss_pred CHHHHHHHHHHHHHccCC
Confidence 887777776666666554
No 479
>PHA02790 Kelch-like protein; Provisional
Probab=72.72 E-value=61 Score=40.69 Aligned_cols=144 Identities=8% Similarity=-0.000 Sum_probs=70.4
Q ss_pred CCCeEEEEEecCc---EEEEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCC---cEEEEECCCCeEE
Q 000685 131 KGRHFLVICCVNK---AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDG---VIRVLSMISWKLV 204 (1352)
Q Consensus 131 dg~~lLasgs~D~---~I~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DG---tIrIWDl~t~~~i 204 (1352)
++. +.++|+.++ .-+||..+.+-..+............+.+ +|...+.|+.++ ++..||.++.+..
T Consensus 318 ~~~-iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~-------~g~IYviGG~~~~~~~ve~ydp~~~~W~ 389 (480)
T PHA02790 318 NNK-LYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI-------NNVIYVIGGHSETDTTTEYLLPNHDQWQ 389 (480)
T ss_pred CCE-EEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE-------CCEEEEecCcCCCCccEEEEeCCCCEEE
Confidence 454 666666533 23566655433333222211222223334 677778877553 4778998775543
Q ss_pred EEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEE
Q 000685 205 RRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITI 284 (1352)
Q Consensus 205 ~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSg 284 (1352)
..-.-.+...-.++. .-++.+.+.|+ .+.+||..+++... ...+....... +++.. ++.+.+.|
T Consensus 390 ~~~~m~~~r~~~~~~----~~~~~IYv~GG---~~e~ydp~~~~W~~----~~~m~~~r~~~-~~~v~----~~~IYviG 453 (480)
T PHA02790 390 FGPSTYYPHYKSCAL----VFGRRLFLVGR---NAEFYCESSNTWTL----IDDPIYPRDNP-ELIIV----DNKLLLIG 453 (480)
T ss_pred eCCCCCCccccceEE----EECCEEEEECC---ceEEecCCCCcEeE----cCCCCCCcccc-EEEEE----CCEEEEEC
Confidence 211101111111222 22566677663 57789987765332 11122111222 22332 46788888
Q ss_pred ECC-----CcEEEEECCCC
Q 000685 285 GAD-----KTLAIWDTVSF 298 (1352)
Q Consensus 285 s~D-----gtV~IWDl~tg 298 (1352)
|.+ ..|..||..+.
T Consensus 454 G~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 454 GFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CcCCCcccceEEEEECCCC
Confidence 764 34566665543
No 480
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=72.54 E-value=26 Score=35.73 Aligned_cols=69 Identities=14% Similarity=0.085 Sum_probs=53.0
Q ss_pred CChhHHHHHHHHHHHcCCcHHHHHHHH-HcCCHHHHHHHHHHc-CCcHHHHHHHHHcCCCchHHHHHHHHHHHhhhcC
Q 000685 1070 GELTRLSGLVTNLISLGLGREAAFSAA-ILGDNALMEKAWQDT-GMLAEAVLHAHAHGRPSLKNLVEAWNKMLQKEVD 1145 (1352)
Q Consensus 1070 g~~~~l~~l~~~a~~~~~~~~~af~~~-~lgd~~~~~~~l~~~-~~~~~A~~~A~t~~~~~~~~~~~~w~~~l~~~~~ 1145 (1352)
.+.=.+.++++.|...+.+ ..++..+ ..|+.+++++++.+. +....|+.+|+.-..+. .|...+...++
T Consensus 67 ~~~yd~~~~~~~c~~~~l~-~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~~~~~~------lw~~~~~~~l~ 137 (140)
T smart00299 67 SNHYDIEKVGKLCEKAKLY-EEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQNNPE------LWAEVLKALLD 137 (140)
T ss_pred cccCCHHHHHHHHHHcCcH-HHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHhCCCHH------HHHHHHHHHHc
Confidence 3444566677779999998 7777766 889999999999988 88999999999866433 77777654443
No 481
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=72.39 E-value=44 Score=40.91 Aligned_cols=220 Identities=12% Similarity=0.069 Sum_probs=125.5
Q ss_pred hhHHHhcCCHHHHHHHHhh----cChhh---HHHHHHHHHhCCcchhhcccc----cccCcc------EEEeecccccHH
Q 000685 908 CRCLAAYGDSVSAVKWASR----LGREH---HDDLAQFMLGMGYATEALHLP----GISKRL------EFDLAMQSNDLK 970 (1352)
Q Consensus 908 f~~~~~~~d~~~a~~~~~~----i~~~~---~~~~a~fl~~~G~~e~Al~~~----~ds~~~------kf~la~~~g~l~ 970 (1352)
=+.+..+||++.|.+++.. .|... .-..++.+...|-++.|++.. ...|++ -..+.++.|+.+
T Consensus 125 A~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 125 AEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHH
Confidence 3566677999999998877 23321 122478888889888777542 222443 356788999999
Q ss_pred HHHHHHhhcccccccCCCCCCCCccccccccccchhh--hhhhhhhhh--------------hHHHHHHHHHHHHHcCCH
Q 000685 971 RALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENI--VEAVQGIVK--------------FAKEFLDLIDAADATGQA 1034 (1352)
Q Consensus 971 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--------------~~~~w~~l~~~al~~g~~ 1034 (1352)
.|.+++..+.+.+..+.+ +..++.. ...++.. ....+|... ....|..++......|++
T Consensus 205 ~a~~~l~~l~k~~~~~~~----~~~~l~~-~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~ 279 (409)
T TIGR00540 205 ALDDIIDNMAKAGLFDDE----EFADLEQ-KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDH 279 (409)
T ss_pred HHHHHHHHHHHcCCCCHH----HHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCCh
Confidence 999988665544221111 1111100 0000001 111122222 335566677889999999
Q ss_pred HHHHHHHHHHHhcCCcccccccccchh----hHH--HHhccCChhHHHHHHHHHHHcCCcHHH--HHH------HHHcCC
Q 000685 1035 NIAREALKRLAAAGSVKGALQGHELRG----LAL--RLANHGELTRLSGLVTNLISLGLGREA--AFS------AAILGD 1100 (1352)
Q Consensus 1035 ~~A~~~~~~~~~~~~~~~~~~~~~~~~----l~l--l~~~~g~~~~l~~l~~~a~~~~~~~~~--af~------~~~lgd 1100 (1352)
+.|++.+.+.-. ..+ |-.. ++. .+...++.+.+.++++.+.+..-. +. .+. ++..|+
T Consensus 280 ~~A~~~l~~~l~-~~p-------d~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~ 350 (409)
T TIGR00540 280 DSAQEIIFDGLK-KLG-------DDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGE 350 (409)
T ss_pred HHHHHHHHHHHh-hCC-------CcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHccc
Confidence 999999998743 111 1111 222 334468888899998888876544 43 332 238899
Q ss_pred HHHHHHHHHH--c-CCcH--H-HHHHHHHcCC-CchHHHHHHHHHHHh
Q 000685 1101 NALMEKAWQD--T-GMLA--E-AVLHAHAHGR-PSLKNLVEAWNKMLQ 1141 (1352)
Q Consensus 1101 ~~~~~~~l~~--~-~~~~--~-A~~~A~t~~~-~~~~~~~~~w~~~l~ 1141 (1352)
.+++.+.|.+ . ..-| + +...|..+-. .+-.+.-+.|++.|.
T Consensus 351 ~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 351 FIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999983 3 1112 2 1233333321 223556677887655
No 482
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=72.12 E-value=12 Score=30.68 Aligned_cols=31 Identities=13% Similarity=0.148 Sum_probs=26.5
Q ss_pred CCEEEEEEcCCC---CEEEEEeCCCcEEEEECCC
Q 000685 12 DKIVKIQLHPTH---PWLVTADASDHVSVWNWEH 42 (1352)
Q Consensus 12 ~~V~~lafSPdg---~~LaTgs~DG~VrVWDl~t 42 (1352)
+.|.++.|||.. .+|+-+-..|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 478999999854 4898888999999999985
No 483
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=72.09 E-value=2.5e+02 Score=34.66 Aligned_cols=61 Identities=10% Similarity=0.063 Sum_probs=37.3
Q ss_pred CCCeEEEEEecCcEEEE-EeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECC
Q 000685 131 KGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI 199 (1352)
Q Consensus 131 dg~~lLasgs~D~~I~w-Dl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrIWDl~ 199 (1352)
.++.++++=+.||.+.+ +-+.......... .--...+.| .+..+.+++++.+..+..|...
T Consensus 143 ~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~---~llPgPl~Y-----~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 143 KGRDFICVQSMDGSLSFFEQESFAFSRFLPD---FLLPGPLCY-----CPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred CCceEEEEEecCceEEEEeCCcEEEEEEcCC---CCCCcCeEE-----eecCCEEEEecCceeEEEecHH
Confidence 33568888899998855 5444322111111 222334667 4466789999988888888763
No 484
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=71.89 E-value=1.4e+02 Score=36.16 Aligned_cols=146 Identities=15% Similarity=0.152 Sum_probs=72.4
Q ss_pred CCeEEEEEeeccccCCCCEEEEEE-----------CCC-cEEEEECCC--Ce--EEEEEecCCCCCeeEEEEeeeCCCCC
Q 000685 165 KSLVCMEFLSRSAVGDVPLVAFGS-----------SDG-VIRVLSMIS--WK--LVRRYTGGHKGSISCLMTFMASSGEA 228 (1352)
Q Consensus 165 ~~V~~vaf~P~s~Spdg~~LasGs-----------~DG-tIrIWDl~t--~~--~i~~l~~gH~~~V~slawf~~s~dg~ 228 (1352)
.....|+| .++|+++++-. ..+ .|.+++-.+ ++ ....+. ..-.....++ +.+++
T Consensus 14 ~~P~~ia~-----d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa-~~l~~p~Gi~---~~~~G- 83 (367)
T TIGR02604 14 RNPIAVCF-----DERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA-EELSMVTGLA---VAVGG- 83 (367)
T ss_pred CCCceeeE-----CCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee-cCCCCcccee---EecCC-
Confidence 45667888 67888766643 223 677776442 22 223333 2233456665 56677
Q ss_pred EEEEEeCCCcEEEEeCCCCC-c---cceeccccccc--ccccceEEEEeeccCCCCCEEEEEECC---------------
Q 000685 229 LLVSGGSDGLLILWSADHGQ-D---SRELVPKLSLK--AHDGGVVAVELSRVMGGSPQLITIGAD--------------- 287 (1352)
Q Consensus 229 ~LaSgS~DGtVrVWDl~tg~-~---~~~~~~~~~l~--gH~~~V~slafsp~~~dg~~LaSgs~D--------------- 287 (1352)
++++ +.+...++.|..... . ...+...+... .+....+.+.|.| |+.+.++-+..
T Consensus 84 lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp---DG~LYv~~G~~~~~~~~~~~~~~~~~ 159 (367)
T TIGR02604 84 VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP---DGWLYFNHGNTLASKVTRPGTSDESR 159 (367)
T ss_pred EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC---CCCEEEecccCCCceeccCCCccCcc
Confidence 5554 444333343543211 1 11111111111 1234578899999 77776655521
Q ss_pred ----CcEEEEECCCCeEEEEecCCCcccccCCceeEEEeCCCCCEEEE
Q 000685 288 ----KTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTC 331 (1352)
Q Consensus 288 ----gtV~IWDl~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lLS~ 331 (1352)
+.|.-+|..+++ +..+ ..++ .+.+.++|+++|.++++
T Consensus 160 ~~~~g~i~r~~pdg~~-~e~~-----a~G~-rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 160 QGLGGGLFRYNPDGGK-LRVV-----AHGF-QNPYGHSVDSWGDVFFC 200 (367)
T ss_pred cccCceEEEEecCCCe-EEEE-----ecCc-CCCccceECCCCCEEEE
Confidence 334444444333 2221 1232 33457888888887654
No 485
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=71.23 E-value=18 Score=41.93 Aligned_cols=87 Identities=26% Similarity=0.218 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcccccccccchhh--HHHHhccCCh-hHHHHHHHHHHHcCCcHHH----
Q 000685 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGL--ALRLANHGEL-TRLSGLVTNLISLGLGREA---- 1091 (1352)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l--~ll~~~~g~~-~~l~~l~~~a~~~~~~~~~---- 1091 (1352)
+-|-.||...+.+|+++.|+.+|.++-....- .+- -+.++ .|.|..-|.+ .+-+.|.+.+...... |+
T Consensus 157 egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~---~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~ 231 (287)
T COG4235 157 EGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPE---ILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALS 231 (287)
T ss_pred hhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHH---HHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHH
Confidence 89999999999999999999999988332111 000 01122 2344444443 5667777777776655 42
Q ss_pred --HHHHHHcCCHHHHHHHHHH
Q 000685 1092 --AFSAAILGDNALMEKAWQD 1110 (1352)
Q Consensus 1092 --af~~~~lgd~~~~~~~l~~ 1110 (1352)
||.++..||+.+++..|+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~ 252 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQM 252 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHH
Confidence 3444477777777776663
No 486
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=71.11 E-value=3.6 Score=47.54 Aligned_cols=63 Identities=22% Similarity=0.285 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcccccccccchhhHHHHhccCChhHHHHHHHHHHHc
Q 000685 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISL 1085 (1352)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~a~~~ 1085 (1352)
..|-.||..|..-|++.+|.+||+.+- ++.+-...-|..|..|....|++++.+.+.+.|...
T Consensus 396 DvWYNlg~vaV~iGD~nlA~rcfrlaL----~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 396 DVWYNLGFVAVTIGDFNLAKRCFRLAL----TSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred hhhhccceeEEeccchHHHHHHHHHHh----ccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 689999999999999999999999772 223334445666777777777777777776666653
No 487
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.95 E-value=39 Score=45.24 Aligned_cols=146 Identities=14% Similarity=0.027 Sum_probs=83.6
Q ss_pred eeeeecCCCCeEEEEEecCcEE--EEEeeCCcccc---cc------ccccCCCCeEEEEEeeccccCCCCEEEEEECCCc
Q 000685 124 ASPPPSTKGRHFLVICCVNKAI--FLDLVTMRGRD---IP------KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGV 192 (1352)
Q Consensus 124 ~slafspdg~~lLasgs~D~~I--~wDl~t~~~~~---i~------~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGt 192 (1352)
..+...+|+....+.-+.++.. .+|+.+..... .. +.........|+.|+|.. -...+.+..|+.
T Consensus 104 ~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~v----p~n~av~l~dls 179 (1405)
T KOG3630|consen 104 VIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLV----PLNSAVDLSDLS 179 (1405)
T ss_pred eEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCc----cchhhhhccccc
Confidence 3334445565344444444433 44776543211 11 112234567789996631 123567778999
Q ss_pred EEEEECCCCeE-EEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEe
Q 000685 193 IRVLSMISWKL-VRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVEL 271 (1352)
Q Consensus 193 IrIWDl~t~~~-i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slaf 271 (1352)
|++..+..... +..+ .....++|++| ++.|..++.|-..|++.-|...-. ....+... .... ...|.+|+|
T Consensus 180 l~V~~~~~~~~~v~s~--p~t~~~Tav~W---SprGKQl~iG~nnGt~vQy~P~le-ik~~ip~P-p~~e-~yrvl~v~W 251 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSF--PVTNSQTAVLW---SPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEP-PVEE-NYRVLSVTW 251 (1405)
T ss_pred hhhhhhhhhhhhhccc--CcccceeeEEe---ccccceeeEecCCCeEEEeecccc-eeecccCC-CcCC-CcceeEEEE
Confidence 99987753322 2222 45678889984 899999999999999998876532 11111000 1111 467999999
Q ss_pred eccCCCCCEEEEE
Q 000685 272 SRVMGGSPQLITI 284 (1352)
Q Consensus 272 sp~~~dg~~LaSg 284 (1352)
-. ...++++-
T Consensus 252 l~---t~eflvvy 261 (1405)
T KOG3630|consen 252 LS---TQEFLVVY 261 (1405)
T ss_pred ec---ceeEEEEe
Confidence 86 44555543
No 488
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=70.76 E-value=2.2e+02 Score=38.31 Aligned_cols=73 Identities=21% Similarity=0.231 Sum_probs=36.8
Q ss_pred ccCChhHHHHHHHHHHHcCCcHHHHHHHHHcCCHHHHH----------HHHHH--cCCcHHHHHHHHHcCCCchHHHHHH
Q 000685 1068 NHGELTRLSGLVTNLISLGLGREAAFSAAILGDNALME----------KAWQD--TGMLAEAVLHAHAHGRPSLKNLVEA 1135 (1352)
Q Consensus 1068 ~~g~~~~l~~l~~~a~~~~~~~~~af~~~~lgd~~~~~----------~~l~~--~~~~~~A~~~A~t~~~~~~~~~~~~ 1135 (1352)
..||...+-.+++.....|.. -..|...++.-+...+ ..+.+ ..+.......|+.++...+..+++.
T Consensus 259 ~~~D~a~al~~l~~Li~~G~d-p~~~L~~LL~~fRDLL~vka~~~~~~~~l~~~p~d~~~~L~~qA~~~s~~~L~r~ie~ 337 (824)
T PRK07764 259 AAGDGAALFGTVDRVIEAGHD-PRRFAEDLLERLRDLIVLQAVPDAAERGLVDAPADQLDRMRAQAQRLGPAELTRAADV 337 (824)
T ss_pred HcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHHhcCcchhhhhccCCHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 356777777777777776654 3333322222111111 11111 1222333455677777777777766
Q ss_pred HHHHHh
Q 000685 1136 WNKMLQ 1141 (1352)
Q Consensus 1136 w~~~l~ 1141 (1352)
..+.+.
T Consensus 338 l~ea~~ 343 (824)
T PRK07764 338 VNDGLT 343 (824)
T ss_pred HHHHHH
Confidence 666643
No 489
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=70.31 E-value=11 Score=34.09 Aligned_cols=67 Identities=13% Similarity=0.054 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcccccccccchhhHHHHhccCChhH-HHHHHHHHHHcCCcHHHHHHHH
Q 000685 1018 AKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTR-LSGLVTNLISLGLGREAAFSAA 1096 (1352)
Q Consensus 1018 ~~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~-l~~l~~~a~~~~~~~~~af~~~ 1096 (1352)
...+..||.....+|+++.|+.+|+++ - + +....|+... +... ..+.+....
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~a---l---------~------~~~~~~~~~~~~a~~---------~~~lg~~~~ 57 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKA---L---------D------IEEQLGDDHPDTANT---------LNNLGECYY 57 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHH---H---------H------HHHHTTTHHHHHHHH---------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH---H---------H------HHHHHCCCCHHHHHH---------HHHHHHHHH
Confidence 367889999999999999999999998 2 1 2334555321 1111 115556666
Q ss_pred HcCCHHHHHHHHHHc
Q 000685 1097 ILGDNALMEKAWQDT 1111 (1352)
Q Consensus 1097 ~lgd~~~~~~~l~~~ 1111 (1352)
.+||.+++++.++++
T Consensus 58 ~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 58 RLGDYEEALEYYQKA 72 (78)
T ss_dssp HTTHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 899999999998865
No 490
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=70.24 E-value=35 Score=35.12 Aligned_cols=65 Identities=23% Similarity=0.166 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcccccccccchhhHHHHhccCChhHHHHHHHH
Q 000685 1016 KFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTN 1081 (1352)
Q Consensus 1016 ~~~~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~ 1081 (1352)
+-..-+..|++.+..+|+++-|.+.|+.+.+-. ....+..--.-+|..++...|+.+...++++.
T Consensus 46 ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 46 YAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 334567779999999999999999999985422 11111100112345677888888877777544
No 491
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=70.11 E-value=2e+02 Score=32.78 Aligned_cols=98 Identities=9% Similarity=-0.036 Sum_probs=55.1
Q ss_pred CeeEEEEeeeCCCCCEEEEEe---CCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEECCCcE
Q 000685 214 SISCLMTFMASSGEALLVSGG---SDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTL 290 (1352)
Q Consensus 214 ~V~slawf~~s~dg~~LaSgS---~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~~dg~~LaSgs~DgtV 290 (1352)
.+.+.+ .+++++.++... ....+.++.. +...... +.+ ..+..-.|++ ++...+....+...
T Consensus 25 ~~~s~A---vS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~-----~~g--~~l~~PS~d~---~g~~W~v~~~~~~~ 89 (253)
T PF10647_consen 25 DVTSPA---VSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPV-----LTG--GSLTRPSWDP---DGWVWTVDDGSGGV 89 (253)
T ss_pred cccceE---ECCCCCeEEEEEEcCCCCEEEEEcC--CCcceee-----ccC--CccccccccC---CCCEEEEEcCCCce
Confidence 566665 788888776655 3334455543 3322211 122 2567778988 56666666666777
Q ss_pred EEEE-CCCCeEEEEecCCCcccccCCceeEEEeCCCCCEE
Q 000685 291 AIWD-TVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL 329 (1352)
Q Consensus 291 ~IWD-l~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lL 329 (1352)
+++. ..++.....--. ...-...|..+.+||||.-+
T Consensus 90 ~~~~~~~~g~~~~~~v~---~~~~~~~I~~l~vSpDG~Rv 126 (253)
T PF10647_consen 90 RVVRDSASGTGEPVEVD---WPGLRGRITALRVSPDGTRV 126 (253)
T ss_pred EEEEecCCCcceeEEec---ccccCCceEEEEECCCCcEE
Confidence 7774 333332221101 11111179999999999844
No 492
>PF14649 Spatacsin_C: Spatacsin C-terminus
Probab=69.88 E-value=15 Score=42.80 Aligned_cols=27 Identities=15% Similarity=0.055 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHcCCcHHHHHHHHHcCC
Q 000685 1100 DNALMEKAWQDTGMLAEAVLHAHAHGR 1126 (1352)
Q Consensus 1100 d~~~~~~~l~~~~~~~~A~~~A~t~~~ 1126 (1352)
+-++..+++....+++||..+|++|+-
T Consensus 223 ~~~~~~~~v~~~~~F~eALIva~AY~~ 249 (296)
T PF14649_consen 223 SREEARRLVMSHPRFPEALIVAEAYDL 249 (296)
T ss_pred CHHHHHHHHHhCCChHHHHHHHHHHCC
Confidence 578899999999999999999999996
No 493
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.66 E-value=99 Score=42.40 Aligned_cols=75 Identities=11% Similarity=0.046 Sum_probs=51.7
Q ss_pred CCCeeeeeecCCCCeEEEEEecCcEEEEEeeC------Cccccc--------------cccc-cCCCCeEEEEEeecccc
Q 000685 120 TSGFASPPPSTKGRHFLVICCVNKAIFLDLVT------MRGRDI--------------PKQE-LDNKSLVCMEFLSRSAV 178 (1352)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~D~~I~wDl~t------~~~~~i--------------~~~~-~h~~~V~~vaf~P~s~S 178 (1352)
...|+|+....+|+ ++.+|.+|++.-+-++. .+++.+ .... .+.++|..++. .
T Consensus 178 g~~V~~I~~t~nGR-IF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~I-----D 251 (1311)
T KOG1900|consen 178 GVSVNCITYTENGR-IFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITI-----D 251 (1311)
T ss_pred CceEEEEEeccCCc-EEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEe-----c
Confidence 45688999888897 88888888777442222 112211 1112 44678999988 4
Q ss_pred CCCCEEEEEECCCcEEEEECCC
Q 000685 179 GDVPLVAFGSSDGVIRVLSMIS 200 (1352)
Q Consensus 179 pdg~~LasGs~DGtIrIWDl~t 200 (1352)
.....+.+=+..|+|++||+..
T Consensus 252 ~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 252 NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cccceeeeeccCceEEEEEccC
Confidence 4556788889999999999975
No 494
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=68.38 E-value=9.6 Score=28.66 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000685 1019 KEFLDLIDAADATGQANIAREALKRL 1044 (1352)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~A~~~~~~~ 1044 (1352)
.-|-.+|.....+|+++.|.+||+++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~a 27 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRA 27 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 57999999999999999999999998
No 495
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=67.84 E-value=17 Score=42.10 Aligned_cols=117 Identities=17% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcChhh-----HHHHHHHHHhCCcchhhcccccccCccEEEeecccccHHHHHHHHhhcccccccCCCCCC
Q 000685 917 SVSAVKWASRLGREH-----HDDLAQFMLGMGYATEALHLPGISKRLEFDLAMQSNDLKRALQCLITMSNSRDIGQDHPG 991 (1352)
Q Consensus 917 ~~~a~~~~~~i~~~~-----~~~~a~fl~~~G~~e~Al~~~~ds~~~kf~la~~~g~l~~a~~~~~~~~~~~~~~~~~~~ 991 (1352)
|..|.++-.+++..+ +...+.-+.+. .+++|+...... .++.++.|+...|-++.
T Consensus 58 y~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A----~~~y~~~G~~~~aA~~~--------------- 117 (282)
T PF14938_consen 58 YEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKA----IEIYREAGRFSQAAKCL--------------- 117 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHH----HHHHHHCT-HHHHHHHH---------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHH----HHHHHhcCcHHHHHHHH---------------
Q ss_pred CCccccccccccchhhhhhhhhhhhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCcccccccccchhhHHHHhccC
Q 000685 992 LDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADAT-GQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHG 1070 (1352)
Q Consensus 992 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g 1070 (1352)
.++|+..... |+++.|.++|+++.+ +|...|
T Consensus 118 ------------------------------~~lA~~ye~~~~d~e~Ai~~Y~~A~~------------------~y~~e~ 149 (282)
T PF14938_consen 118 ------------------------------KELAEIYEEQLGDYEKAIEYYQKAAE------------------LYEQEG 149 (282)
T ss_dssp ------------------------------HHHHHHHCCTT--HHHHHHHHHHHHH------------------HHHHTT
T ss_pred ------------------------------HHHHHHHHHHcCCHHHHHHHHHHHHH------------------HHHHCC
Q ss_pred ChhHHHHHHHHHHHcCCcHHHHHHHHHcCCHHHHHHHHHH
Q 000685 1071 ELTRLSGLVTNLISLGLGREAAFSAAILGDNALMEKAWQD 1110 (1352)
Q Consensus 1071 ~~~~l~~l~~~a~~~~~~~~~af~~~~lgd~~~~~~~l~~ 1110 (1352)
........ ..++|-....+|++++++++|.+
T Consensus 150 ~~~~a~~~---------~~~~A~l~~~l~~y~~A~~~~e~ 180 (282)
T PF14938_consen 150 SPHSAAEC---------LLKAADLYARLGRYEEAIEIYEE 180 (282)
T ss_dssp -HHHHHHH---------HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred ChhhHHHH---------HHHHHHHHHHhCCHHHHHHHHHH
No 496
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=67.06 E-value=28 Score=41.96 Aligned_cols=88 Identities=15% Similarity=0.064 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcccccccccchhhHHHHhccCChhHHHHHHHHHHHcCCcHHHHHH----
Q 000685 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFS---- 1094 (1352)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~~af~---- 1094 (1352)
..++..|+.|...|+++.|.++|.++-... +..+. -+..++.+|...|+.+.....++.|....-..-.++.
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~---a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~ 78 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLD-PNNAE---LYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGT 78 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 567888999999999999999999985432 21111 1234556788889998888888877665433122222
Q ss_pred -HHHcCCHHHHHHHHHH
Q 000685 1095 -AAILGDNALMEKAWQD 1110 (1352)
Q Consensus 1095 -~~~lgd~~~~~~~l~~ 1110 (1352)
++.+|++++|++.|.+
T Consensus 79 ~~~~lg~~~eA~~~~~~ 95 (356)
T PLN03088 79 ACMKLEEYQTAKAALEK 95 (356)
T ss_pred HHHHhCCHHHHHHHHHH
Confidence 2267777777777653
No 497
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.05 E-value=35 Score=42.90 Aligned_cols=156 Identities=15% Similarity=0.112 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHhh---cChhh---HHHHHHHHHhCCcchhhcccccccCccEEEeec----------ccccHHHHHHHH
Q 000685 913 AYGDSVSAVKWASR---LGREH---HDDLAQFMLGMGYATEALHLPGISKRLEFDLAM----------QSNDLKRALQCL 976 (1352)
Q Consensus 913 ~~~d~~~a~~~~~~---i~~~~---~~~~a~fl~~~G~~e~Al~~~~ds~~~kf~la~----------~~g~l~~a~~~~ 976 (1352)
.+|+.-.|+...+. +++.+ +..+.-.+..++-++.|+..+.-....|=.-|+ +-|.||.|..+-
T Consensus 230 ~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Y 309 (966)
T KOG4626|consen 230 AQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTY 309 (966)
T ss_pred hcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHH
Q ss_pred hhcccccccCCCCCCCCccccccccccchhhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccccccc
Q 000685 977 ITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQG 1056 (1352)
Q Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~~~~~~~ 1056 (1352)
.+-++.. -.|..-+..|+.+--..|++..|+.||.++
T Consensus 310 -----kral~~~--------------------------P~F~~Ay~NlanALkd~G~V~ea~~cYnka------------ 346 (966)
T KOG4626|consen 310 -----KRALELQ--------------------------PNFPDAYNNLANALKDKGSVTEAVDCYNKA------------ 346 (966)
T ss_pred -----HHHHhcC--------------------------CCchHHHhHHHHHHHhccchHHHHHHHHHH------------
Q ss_pred ccchhhHHHHhccCChhHHHHHHHHHHHcCCcHHHHHHHH--HcCCHHHHHH-------HHHHcCCcHHHHHH
Q 000685 1057 HELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFSAA--ILGDNALMEK-------AWQDTGMLAEAVLH 1120 (1352)
Q Consensus 1057 ~~~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~~af~~~--~lgd~~~~~~-------~l~~~~~~~~A~~~ 1120 (1352)
|+.+-.-.+.|..|+++=.+.|+. .-|-..+ -+.=..+|-. +|++.|.+.+|+.+
T Consensus 347 --------L~l~p~hadam~NLgni~~E~~~~-e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~ 410 (966)
T KOG4626|consen 347 --------LRLCPNHADAMNNLGNIYREQGKI-EEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMC 410 (966)
T ss_pred --------HHhCCccHHHHHHHHHHHHHhccc-hHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHH
No 498
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=66.86 E-value=20 Score=35.98 Aligned_cols=26 Identities=15% Similarity=0.110 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000685 1019 KEFLDLIDAADATGQANIAREALKRL 1044 (1352)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~A~~~~~~~ 1044 (1352)
..|..+|......|+++.|+++|+++
T Consensus 52 ~~~~~la~~~~~~~~~~~A~~~~~~~ 77 (135)
T TIGR02552 52 RYWLGLAACCQMLKEYEEAIDAYALA 77 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888899998899999999888887
No 499
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=66.84 E-value=20 Score=40.19 Aligned_cols=70 Identities=16% Similarity=0.279 Sum_probs=47.9
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCCccceecccccc-c-------ccccceEEEEeeccCCCCCEEEEEECCCcEEEEEC
Q 000685 224 SSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSL-K-------AHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDT 295 (1352)
Q Consensus 224 s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l-~-------gH~~~V~slafsp~~~dg~~LaSgs~DgtV~IWDl 295 (1352)
..++++++.-+.+|.+++||+.+++.+........+ . .....|..+.++. +|.-|++-+ +|....||.
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~---~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS---NGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC---CCCEEEEEe-CCCEEEecc
Confidence 346778999999999999999998765432111111 1 3455677788876 666666665 477888886
Q ss_pred CC
Q 000685 296 VS 297 (1352)
Q Consensus 296 ~t 297 (1352)
.-
T Consensus 95 ~L 96 (219)
T PF07569_consen 95 DL 96 (219)
T ss_pred cc
Confidence 53
No 500
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=66.58 E-value=2.7e+02 Score=32.85 Aligned_cols=289 Identities=10% Similarity=-0.020 Sum_probs=0.0
Q ss_pred EEEECCCCcEEEEEeccCccceEEeccccceeEecccccCCCccccccCCceEEEEEcCCeEEEEEcCCccccccccccc
Q 000685 36 SVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTA 115 (1352)
Q Consensus 36 rVWDl~tg~~i~t~~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~~g~V~sVaF~Dg~IrlWDl~t~~~i~~~~~~~ 115 (1352)
+.-++.+...+..+.+......+.+...+..+-+.. ...+=..+........
T Consensus 9 ~~v~l~t~~~l~dV~F~d~~~G~~VG~~g~il~T~D---------------------GG~tW~~~~~~~~~~~------- 60 (302)
T PF14870_consen 9 QQVSLPTDKPLLDVAFVDPNHGWAVGAYGTILKTTD---------------------GGKTWQPVSLDLDNPF------- 60 (302)
T ss_dssp EEEE-S-SS-EEEEEESSSS-EEEEETTTEEEEESS---------------------TTSS-EE-----S----------
T ss_pred EEeecCCCCceEEEEEecCCEEEEEecCCEEEEECC---------------------CCccccccccCCCccc-------
Q ss_pred cccCCCCeeeeeecCCCCeEEEEEecCcEEEEEeeCCccccccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEE
Q 000685 116 VSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRV 195 (1352)
Q Consensus 116 ~~~~~~~V~slafspdg~~lLasgs~D~~I~wDl~t~~~~~i~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DGtIrI 195 (1352)
...+.++.|..+. .+++|....+++-.-.-..-..+.....-......+... +...+...+..|.|..
T Consensus 61 ----~~~l~~I~f~~~~--g~ivG~~g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l------~~~~~~l~~~~G~iy~ 128 (302)
T PF14870_consen 61 ----DYHLNSISFDGNE--GWIVGEPGLLLHTTDGGKTWERVPLSSKLPGSPFGITAL------GDGSAELAGDRGAIYR 128 (302)
T ss_dssp ------EEEEEEEETTE--EEEEEETTEEEEESSTTSS-EE----TT-SS-EEEEEEE------ETTEEEEEETT--EEE
T ss_pred ----eeeEEEEEecCCc--eEEEcCCceEEEecCCCCCcEEeecCCCCCCCeeEEEEc------CCCcEEEEcCCCcEEE
Q ss_pred EECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccC
Q 000685 196 LSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVM 275 (1352)
Q Consensus 196 WDl~t~~~i~~l~~gH~~~V~slawf~~s~dg~~LaSgS~DGtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~slafsp~~ 275 (1352)
=.=....-..... .-.+.+..+. .+++|++++.++......-||-........ -......|.++.|.|
T Consensus 129 T~DgG~tW~~~~~-~~~gs~~~~~---r~~dG~~vavs~~G~~~~s~~~G~~~w~~~------~r~~~~riq~~gf~~-- 196 (302)
T PF14870_consen 129 TTDGGKTWQAVVS-ETSGSINDIT---RSSDGRYVAVSSRGNFYSSWDPGQTTWQPH------NRNSSRRIQSMGFSP-- 196 (302)
T ss_dssp ESSTTSSEEEEE--S----EEEEE---E-TTS-EEEEETTSSEEEEE-TT-SS-EEE------E--SSS-EEEEEE-T--
T ss_pred eCCCCCCeeEccc-CCcceeEeEE---ECCCCcEEEEECcccEEEEecCCCccceEE------ccCccceehhceecC--
Q ss_pred CCCCEEEEEECCCcEEEEE-CCCCeEEEEecCCCcccccCCceeEEEeCCCCCEEEEecCCeEEeccCCcccccccCccc
Q 000685 276 GGSPQLITIGADKTLAIWD-TVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAIEHPTYSALTRPLCE 354 (1352)
Q Consensus 276 ~dg~~LaSgs~DgtV~IWD-l~tg~~l~~~~~~~~l~~hs~~V~svafspdg~lLS~s~Dg~IWDi~t~~~~~~~~~l~~ 354 (1352)
++.+.+.+ ..|.|++=+ ....+.... .........-.+..++|.+++.+.+++..|.|+--..+
T Consensus 197 -~~~lw~~~-~Gg~~~~s~~~~~~~~w~~--~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~Dg----------- 261 (302)
T PF14870_consen 197 -DGNLWMLA-RGGQIQFSDDPDDGETWSE--PIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDG----------- 261 (302)
T ss_dssp -TS-EEEEE-TTTEEEEEE-TTEEEEE-----B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESST-----------
T ss_pred -CCCEEEEe-CCcEEEEccCCCCcccccc--ccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCCC-----------
Q ss_pred cCCCCCCeEEec--CCcccEEEEEEecCCCcEEEEEECCCeEEE
Q 000685 355 LSSLVPPQVLAH--HKKLRVYCMVAHSLQPHLVATGTNVGVIIS 396 (1352)
Q Consensus 355 ~~~~~~~~~l~~--h~~~~V~~la~sp~~~~lLatGs~DG~Ilr 396 (1352)
.+.-..... +-...++.|.|.+ +..-++-+.+|+++|
T Consensus 262 ---GktW~~~~~~~~~~~n~~~i~f~~--~~~gf~lG~~G~ll~ 300 (302)
T PF14870_consen 262 ---GKTWQKDRVGENVPSNLYRIVFVN--PDKGFVLGQDGVLLR 300 (302)
T ss_dssp ---TSS-EE-GGGTTSSS---EEEEEE--TTEEEEE-STTEEEE
T ss_pred ---CccceECccccCCCCceEEEEEcC--CCceEEECCCcEEEE
Done!