Query 000685
Match_columns 1352
No_of_seqs 798 out of 4082
Neff 7.1
Searched_HMMs 29240
Date Tue Mar 26 17:43:57 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000685.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_455-459//hhsearch_pdb/000685hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkq_A Coatomer beta'-subunit; 1.0 1 1 655.2 79.8 767 3-1145 5-798 (814)
2 1nr0_A Actin interacting prote 1.0 1 1 343.2 52.6 334 8-405 15-358 (611)
3 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 341.1 53.2 402 4-527 608-1055(1249)
4 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 324.1 46.4 336 4-403 650-1035(1249)
5 1nr0_A Actin interacting prote 1.0 1 1 323.2 60.8 433 4-534 52-509 (611)
6 2ymu_A WD-40 repeat protein; u 1.0 1 1 322.1 62.1 320 4-402 9-334 (577)
7 1vyh_C Platelet-activating fac 1.0 1 1 315.7 40.3 289 4-401 101-410 (410)
8 2ymu_A WD-40 repeat protein; u 1.0 1 1 312.6 54.9 320 3-400 49-373 (577)
9 3mkq_A Coatomer beta'-subunit; 1.0 1 1 308.5 59.8 253 3-299 47-304 (814)
10 1got_B GT-beta; complex (GTP-b 1.0 1 1 298.0 43.2 288 3-399 47-340 (340)
No 1
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=1.00 E-value=1 Score=655.19 Aligned_cols=767 Identities=18% Similarity=0.251 Sum_probs=487.6
Q ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCEEEECCCCCEEEECCCCCCCCCCCCC
Q ss_conf 36993689998899999389999999968991999987988199998136755327743566525731245579853002
Q 000685 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAM 82 (1352)
Q Consensus 3 ~l~~L~gHs~~V~sIafSPdg~~LaTgs~DG~IrIWDl~tg~~i~tl~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l 82 (1352)
..+.|.+|++.|++++|||++++|++++.||.|+|||+.+++.+..+. +|...
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~-~~~~~-------------------------- 57 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ-VTETP-------------------------- 57 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSC--------------------------
T ss_pred CCEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE-CCCCC--------------------------
T ss_conf 000450589856899988999989999479989999899991677873-38996--------------------------
Q ss_pred CCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCEE-EEEEECCCCCCCCCCC
Q ss_conf 598437998709929999867754113356510246888866311068999299999659599-9991079610034112
Q 000685 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQE 161 (1352)
Q Consensus 83 ~~g~V~sVaF~Dg~IrIWDl~t~~~i~~~~~~~~~~~~~~V~siafspdg~~lLvsgs~D~~I-~wDl~t~~~~~i~~~~ 161 (1352)
|.+++|+|+++ ++++++.|+.+ +||+.+++. +....
T Consensus 58 ----------------------------------------v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~--~~~~~ 94 (814)
T 3mkq_A 58 ----------------------------------------VRAGKFIARKN-WIIVGSDDFRIRVFNYNTGEK--VVDFE 94 (814)
T ss_dssp ----------------------------------------EEEEEEEGGGT-EEEEEETTSEEEEEETTTCCE--EEEEE
T ss_pred ----------------------------------------EEEEEEECCCC-EEEEEECCCEEEEEECCCCCE--EEEEE
T ss_conf ----------------------------------------88999968999-899992899499998999958--79981
Q ss_pred CCCCCEEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCC-EEEEEEECCCCCCEEEEEEEEECC-CCCEEEEEECCCCE
Q ss_conf 5899837999912243699999999988992999977998-599999067787704999866379-99999999599909
Q 000685 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-KLVRRYTGGHKGSISCLMTFMASS-GEALLVSGGSDGLL 239 (1352)
Q Consensus 162 ~h~~~V~~Iaf~P~s~Spdg~~LvsGs~DGtIrIWDl~t~-~~i~~l~~gH~~~V~sI~wf~~s~-dg~~LaSgS~DGtI 239 (1352)
.|...|+++.| +++++++++++.||.|++||+.++ .....+. +|...|.+++ +++ ++..+++++.||.|
T Consensus 95 ~~~~~v~~~~~-----s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~~v~~~~---~~p~~~~~l~~~~~dg~v 165 (814)
T 3mkq_A 95 AHPDYIRSIAV-----HPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-GHEHFVMCVA---FNPKDPSTFASGCLDRTV 165 (814)
T ss_dssp CCSSCEEEEEE-----CSSSSEEEEEETTSEEEEEEGGGTSEEEEEEE-CCSSCEEEEE---EETTEEEEEEEEETTSEE
T ss_pred CCCCCEEEEEE-----ECCCCEEEEECCCCEEEEEECCCCCEEEEEEC-CCCCCEEEEE---EECCCCCEEEEEECCCEE
T ss_conf 68997899999-----58999899992899899998999954879983-7998688999---976999999999488949
Q ss_pred EEEECCCCCCCCEECCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCCCCCCCEEE
Q ss_conf 99967999842100132011134666499995102799999999979992999989998278884687854666776049
Q 000685 240 ILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWC 319 (1352)
Q Consensus 240 rIWDl~sg~~~~~~~~~~~l~gH~~~V~sIafsp~~~dg~~LvSgs~Dg~I~IWDl~tg~~l~~l~~~~~l~~hs~~V~s 319 (1352)
++||+.++.....+ ...+...+.+++|+|. .++.++++++.|+.|++||+.+++++.. +.+|...|.+
T Consensus 166 ~vwd~~~~~~~~~~-----~~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~------~~~~~~~v~~ 233 (814)
T 3mkq_A 166 KVWSLGQSTPNFTL-----TTGQERGVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVAT------LEGHMSNVSF 233 (814)
T ss_dssp EEEETTCSSCSEEE-----ECCCTTCCCEEEECCS-TTCCEEEEECTTSEEEEEETTTTEEEEE------EECCSSCEEE
T ss_pred EEEECCCCCCEEEE-----ECCCCCCEEEEEEEEC-CCCCEEEEEECCCEEEEEECCCCCEEEE------ECCCCCCEEE
T ss_conf 99989999610698-----3588897799999977-9998999993899799999999918899------8478888789
Q ss_pred EEECCCCCEE-EEECCCE--EEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCC-EEEEEECCCEEE
Q ss_conf 8747999899-9830872--99645786455666743557888981770588636899999049991-999997898499
Q 000685 320 HPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPH-LVATGTNVGVII 395 (1352)
Q Consensus 320 iafspdg~lL-S~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~I~~Ia~sp~~~~-lLatGs~DG~Il 395 (1352)
+.|+|++.++ +++.|+. +|++.++. ....+..+.. .+++++|+|.+.. +++++++++.
T Consensus 234 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~---------------~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~-- 295 (814)
T 3mkq_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYK---------------VEKTLNVGLE-RSWCIATHPTGRKNYIASGFDNGF-- 295 (814)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCS---------------EEEEECCSSS-SEEEEEECTTCGGGEEEEEETTEE--
T ss_pred EEECCCCCEEEEEECCCEEEEEECCCCC---------------EEEEEECCCC-CEEEEEECCCCCCEEEEEEECCCE--
T ss_conf 9985999999999089969999899994---------------7778406888-679999924999509999907987--
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCEEEEEECCE-----EEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf 99558999975566899999885189996592-----9999764046888888888522568863489950356652023
Q 000685 396 SEFDPRSLPAVAPLPTPSGSRDHSAVYIVERE-----LKLVNFQLSSAANPSLGNNGSLSETGRLKGDLPDALQIKQIKK 470 (1352)
Q Consensus 396 riWd~~s~p~i~~l~~~s~s~~~~~~~~~~~~-----lkl~~f~~~~~~n~~lg~~~~~S~~Gk~~~~~~~el~v~~~~k 470 (1352)
.+|+.........+ +.+...++..... +.......... ...+.... ...+
T Consensus 296 ~~~~~~~~~~~~~~-----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~---------~~~~ 350 (814)
T 3mkq_A 296 TVLSLGNDEPTLSL-----DPVGKLVWSGGKNAAASDIFTAVIRGNEE-----------VEQDEPLS---------LQTK 350 (814)
T ss_dssp EEEECSCCSCCEEE-----CSSSEEEEECCTTSCTTCEEEEECCSCCC-----------CCSSSCBC---------CCCE
T ss_pred EEEECCCCCCEEEE-----CCCCCEEEECCCCCCCEEEEEEECCCCCC-----------CCCCCCCE---------EEEE
T ss_conf 99976799741677-----79987899776366411246653046555-----------55676201---------4651
Q ss_pred CCCCCCCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 33355788984189993899989999889992899992782374216254998505998189984368898666888998
Q 000685 471 HISTPVPHDSYSILSVSSSGKYLAVVWPDIPYFSVYKVSDWSIVDSGSARLLAWDTCRDRFAILESALTPRLPIIPKGGS 550 (1352)
Q Consensus 471 ~i~t~~~~e~~s~l~~S~dGkyIav~~~~~g~~~Iy~is~~~~i~~G~~~~iaW~~~~~~favl~~~~~~~i~~~~k~~~ 550 (1352)
... ..... ...+.+||+|+++++.. ++.+.+|++..++....+.+..++|++++..+++.....
T Consensus 351 ~~~-~~~~~-~~~~~~spdg~~la~~~--~~~~~i~~~~~~~~~~~~~i~~~~~spdg~~la~~~~~g------------ 414 (814)
T 3mkq_A 351 ELG-SVDVF-PQSLAHSPNGRFVTVVG--DGEYVIYTALAWRNKAFGKCQDFVWGPDSNSYALIDETG------------ 414 (814)
T ss_dssp EEC-CCSSC-CSEEEECTTSSEEEEEE--TTEEEEEETTTTEEEEEEECSEEEECTTSSCEEEECTTC------------
T ss_pred CCC-CCCCC-CCEEEECCCCCEEEEEC--CCEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEEECCC------------
T ss_conf 178-87657-74068999999899942--988999987454456799547999947998599996898------------
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC--CCCCCEEEEEECCCCCCEEECCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 2347999999999999999862012435777314--89831367640799987000014511105540365334310011
Q 000685 551 SRKAKEAAAAAAAAQAAAASAASSATVQARILLD--DGTSNILMRSIGGSSEPVIGLHGGALLGVAYRTSRRISPIAATA 628 (1352)
Q Consensus 551 ~~k~ke~~~aaa~~~aaa~aaa~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~gg~llgv~~~~~~~~~~~~~~~ 628 (1352)
+ ++++.. .....+. .-...+.+++++.|+.+.
T Consensus 415 -------------------------~--v~l~~~~~~~~~~v~-----~~~~s~dg~~~~~l~~~~-------------- 448 (814)
T 3mkq_A 415 -------------------------Q--IKYYKNFKEVTSWSV-----PMHSAIDRLFSGALLGVK-------------- 448 (814)
T ss_dssp -------------------------C--EEEEETTEECTTCCC-----CCSSCCCEEECSSSEEEE--------------
T ss_pred -------------------------C--EEEEECCCCCCCEEE-----CCCCCCCCEECCEEEEEE--------------
T ss_conf -------------------------3--999977777524397-----378675523654699996--------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCEEEEE------
Q ss_conf 11112478878888887765334689888899887799847983135532013678998467987996699999------
Q 000685 629 ISTIQSMPLSGFGSSGLSSFTTFDDGFSSQKSPAEAAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA------ 702 (1352)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydw~~~~~~~~~~~~~~~~~w~~~~~~~a~~------ 702 (1352)
....+.+||+++++.++.+.....++.|++++.++++.
T Consensus 449 ------------------------------------~d~~v~~~d~~~~~~~~~~~~~~~~v~~s~dg~~la~~~~~~~~ 492 (814)
T 3mkq_A 449 ------------------------------------SDGFVYFFDWDNGTLVRRIDVNAKDVIWSDNGELVMIVNTNSNG 492 (814)
T ss_dssp ------------------------------------ETTEEEEECTTTCCEEEEESSCEEEEEECTTSSEEEEEECCCSS
T ss_pred ------------------------------------CCCEEEEEECCCCCEEEEEECCCCEEEECCCCCEEEEEECCCCC
T ss_conf ------------------------------------69989999987695999973588879996999999999867666
Q ss_pred EEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 50179997056433112310123554412221025774699614886427753112334677888788766210001023
Q 000685 703 YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLFVVTPTTIECVFVDAGVAAIDVETMKMKEEMKLKEVQSRAVAEHG 782 (1352)
Q Consensus 703 ~~~~i~i~~~~~~~~~~~~~~~~~~~s~~w~~~~~f~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (1352)
+++.++++.++....... . ..+. +.+..+++-.|.... ...+.+++++|.+
T Consensus 493 ~~~~~~~~~~~~~~~~~~-~-----~~~~-------~~~~~~~~~~~~~~~----------------~~~~~i~s~~w~~ 543 (814)
T 3mkq_A 493 DEASGYTLLFNKDAYLEA-A-----NNGN-------IDDSEGVDEAFDVLY----------------ELSESITSGKWVG 543 (814)
T ss_dssp CSCSEEEEEECHHHHHHH-H-----HHTC-------CBTTTBCTTTEEEEE----------------EECSCCSEEEEET
T ss_pred CCCEEEEEEECHHHHHHH-H-----HCCC-------CCCCCCHHHHEEEEE----------------EECCEEEEEEEEC
T ss_conf 774289999546886666-6-----4168-------762125022213645----------------7642787659808
Q ss_pred CHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEECCCCEEEE
Q ss_conf 11111240101222100014997101110100144678997544787643358999994101001221022127861358
Q 000685 783 ELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1352)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 862 (1352)
++++|+.. .+++.|..+|+..+
T Consensus 544 ~~~i~~t~----------------------------------------------------------~~~~~~~~~~~~~~ 565 (814)
T 3mkq_A 544 DVFIFTTA----------------------------------------------------------TNRLNYFVGGKTYN 565 (814)
T ss_dssp TEEEEECT----------------------------------------------------------TSEEEEEETTEEEE
T ss_pred CEEEEECC----------------------------------------------------------CCEEEEEECCEEEE
T ss_conf 88999768----------------------------------------------------------87089996986689
Q ss_pred EECCCCCCCCCCCCEEEEEE--ECCEEEEEECCCCEEEEECCHHHHHHHHHHHCCCHHHHHH-HHHHCC-HHHHHHHHHH
Q ss_conf 85168887899953699899--5887999937885899975913362067783599899999-886149-0257889999
Q 000685 863 VTRFPTEQKRPIGPLVVVGV--KDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVK-WASRLG-REHHDDLAQF 938 (1352)
Q Consensus 863 ~~~l~~~~~~~~~~~~l~g~--~~~~~~~~d~~~~~~~~~l~~~~~~f~~~~~~~d~~~a~~-~~~~i~-~~~~~~~a~f 938 (1352)
+.+++ .++|++|| .+++++++|++.++..|.|+..+++|++++.+++++.|.+ +++.++ +.+++.+++|
T Consensus 566 ~~~~~-------~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~i~~~~~~~~~~~~ 638 (814)
T 3mkq_A 566 LAHYT-------KEMYLLGYLARDNKVYLADREVHVYGYEISLEVLEFQTLTLRGEIEEAIENVLPNVEGKDSLTKIARF 638 (814)
T ss_dssp EEECS-------SCCEEEEEEGGGTEEEEECTTCCEEEEECCHHHHHHHHHHHTTCHHHHHHHTGGGCCCHHHHHHHHHH
T ss_pred EEECC-------CCEEEEEEEECCCEEEEECCCCCEEEEEECCHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99989-------66799999832999999928888799998909999969987079999998887428846789999999
Q ss_pred HHHCCCCHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99189601211345656765898540135399999998631366535999999873210000100101356561014559
Q 000685 939 MLGMGYATEALHLPGISKRLEFDLAMQSNDLKRALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFA 1018 (1352)
Q Consensus 939 l~~~G~~e~Al~~~~ds~~~kf~la~~~g~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1018 (1352)
|+++|++|+||+++.| +.++|++++++|+++.|++++ +.++.+
T Consensus 639 l~~~~~~~~a~~~~~~-~~~~f~~~l~~~~~~~A~~~~------~~~~~~------------------------------ 681 (814)
T 3mkq_A 639 LEGQEYYEEALNISPD-QDQKFELALKVGQLTLARDLL------TDESAE------------------------------ 681 (814)
T ss_dssp HHHTTCHHHHHHHCCC-HHHHHHHHHHHTCHHHHHHHH------TTCCCH------------------------------
T ss_pred HHHCCCHHHHEECCCC-CCHHEEHHHHCCCHHHHHHHH------HHHCCH------------------------------
T ss_conf 9868986896052789-314250214509999999999------861767------------------------------
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHH-H
Q ss_conf 999999999999199899999999998529942112112102357787504994679999999998299678999999-9
Q 000685 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFSAA-I 1097 (1352)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~L~ll~~~~g~~~~l~~l~~~a~~~~~~~~~af~~~-~ 1097 (1352)
.+|++||++|+.+|++++|++||+++ + |+++|.+||...|+.+++.+++++++..|++ +.||.++ +
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~---~---------d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~-~~A~~~~~~ 748 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNA---H---------DLESLFLLHSSFNNKEGLVTLAKDAETTGKF-NLAFNAYWI 748 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH---T---------CHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHC---C---------CHHHHHHHHHHCCCHHHHHHHHHHHHHCCCH-HHHHHHHHH
T ss_conf 68999999999849989999999870---2---------7135589987729999999999999985866-799999988
Q ss_pred CCCHHHHHHHHHHCCCCHHHHHHHHHCCCCC--HHHHHHHHHHHHHHHCC
Q ss_conf 0999999999998599279999999809996--68999999999853107
Q 000685 1098 LGDNALMEKAWQDTGMLAEAVLHAHAHGRPS--LKNLVEAWNKMLQKEVD 1145 (1352)
Q Consensus 1098 lgd~~~~~~~l~~~~~~~~A~~~A~t~~~~~--~~~~~~~w~~~l~~~~~ 1145 (1352)
+||+++|+++|++++|+++|+++|++|+|+. +++++++|++.|....+
T Consensus 749 ~g~~~~a~~~~~~~~~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~~~ 798 (814)
T 3mkq_A 749 AGDIQGAKDLLIKSQRFSEAAFLGSTYGLGDNEVNDIVTKWKENLILNGK 798 (814)
T ss_dssp HTCHHHHHHHHHHTTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 09999999999986994789999987099757889999999999876164
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=343.24 Aligned_cols=334 Identities=14% Similarity=0.166 Sum_probs=255.1
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCEEEEC--CCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf 689998899999389999999968991999987988199998136755327743--566525731245579853002598
Q 000685 8 RPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAMRGG 85 (1352)
Q Consensus 8 ~gHs~~V~sIafSPdg~~LaTgs~DG~IrIWDl~tg~~i~tl~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~~l~~g 85 (1352)
..+.+.+.+++|+|+|++|++++ ++.|++||+.+++.+..+. +|.+.+.++. |++++|++++
T Consensus 15 ~~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~-~h~~~v~~~~~spdg~~lasg~-------------- 78 (611)
T 1nr0_A 15 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYT-EHSHQTTVAKTSPSGYYCASGD-------------- 78 (611)
T ss_dssp CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEEC-CCSSCEEEEEECTTSSEEEEEE--------------
T ss_pred CCCCCCEEEEEECCCCCEEEECC-CCEEEEECCCCCCCCEEEC-CCCCCEEEEEECCCCCEEEEEE--------------
T ss_conf 74068236976679999799679-9979994578724273765-8998659999999996899994--------------
Q ss_pred CEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCC----EEEEEEECCCCCCCCCCC
Q ss_conf 4379987099299998677541133565102468888663110689992999996595----999991079610034112
Q 000685 86 SVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNK----AIFLDLVTMRGRDIPKQE 161 (1352)
Q Consensus 86 ~V~sVaF~Dg~IrIWDl~t~~~i~~~~~~~~~~~~~~V~siafspdg~~lLvsgs~D~----~I~wDl~t~~~~~i~~~~ 161 (1352)
.|+.|++||+.+++... .....+ |...|.+++|+|+++ .+++++.+. .+ +.+..+.. ...+.
T Consensus 79 -------~d~~v~lWd~~~~~~~~--~~~~~~-~~~~v~~v~fs~dg~-~l~~~~~~~~~~~~v-~~wd~~~~--~~~l~ 144 (611)
T 1nr0_A 79 -------VHGNVRIWDTTQTTHIL--KTTIPV-FSGPVKDISWDSESK-RIAAVGEGRERFGHV-FLFDTGTS--NGNLT 144 (611)
T ss_dssp -------TTSEEEEEESSSTTCCE--EEEEEC-SSSCEEEEEECTTSC-EEEEEECCSSCSEEE-EETTTCCB--CBCCC
T ss_pred -------CCCCEEEEECCCCCCEE--EEEECC-CCCCEEEEEECCCCC-EEEEEECCCCCEEEE-EEEECCCC--CCEEC
T ss_conf -------89978994898984156--676225-578448999899999-799998997736699-99638997--63254
Q ss_pred CCCCCEEEEEEEECCCCCCCC-EEEEEECCCCEEEEECCCCEEEEEEECCCCCCEEEEEEEEECCCCCEEEEEECCCCEE
Q ss_conf 589983799991224369999-9999988992999977998599999067787704999866379999999995999099
Q 000685 162 LDNKSLVCMEFLSRSAVGDVP-LVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240 (1352)
Q Consensus 162 ~h~~~V~~Iaf~P~s~Spdg~-~LvsGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~sI~wf~~s~dg~~LaSgS~DGtIr 240 (1352)
.|...|++++| +|++. .+++|+.|++|++||..++++...+. +|...|.+++ |+|++++|++++.|++|+
T Consensus 145 gh~~~v~~v~f-----~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~-~H~~~V~~v~---fspdg~~las~s~D~~i~ 215 (611)
T 1nr0_A 145 GQARAMNSVDF-----KPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG-EHTKFVHSVR---YNPDGSLFASTGGDGTIV 215 (611)
T ss_dssp CCSSCEEEEEE-----CSSSSCEEEEEETTSCEEEEETTTBEEEEEEC-CCSSCEEEEE---ECTTSSEEEEEETTSCEE
T ss_pred CCCCCCEEEEE-----CCCCCEEEEEEECCCEEEEEECCCCEEEEEEC-CCCCCEEEEE---ECCCCCEEEEEECCCCEE
T ss_conf 78898369998-----89998299999289809999799975766520-0257169999---979999899998999199
Q ss_pred EEECCCCCCCCEEC-CCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCCCCCCCEEE
Q ss_conf 99679998421001-32011134666499995102799999999979992999989998278884687854666776049
Q 000685 241 LWSADHGQDSRELV-PKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWC 319 (1352)
Q Consensus 241 IWDl~sg~~~~~~~-~~~~l~gH~~~V~sIafsp~~~dg~~LvSgs~Dg~I~IWDl~tg~~l~~l~~~~~l~~hs~~V~s 319 (1352)
+||+.+++....+. ......+|.+.|++++|+| ++.+|++++.|++|++||+.+++++.++... ..+......
T Consensus 216 lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp---dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~---~~~~~~~~~ 289 (611)
T 1nr0_A 216 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP---DGTKIASASADKTIKIWNVATLKVEKTIPVG---TRIEDQQLG 289 (611)
T ss_dssp EEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT---TSSEEEEEETTSEEEEEETTTTEEEEEEECC---SSGGGCEEE
T ss_pred EEECCCCCEEEEECCCCCCCCCCCCCEEEEEECC---CCCEEEEEECCCEEEEEECCCCCEEEEECCC---CCCCCEEEE
T ss_conf 9889998286651366432356678789999979---9999999908980999968887013440478---876640689
Q ss_pred EEECCCCCEEEEECCCE--EEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 87479998999830872--9964578645566674355788898177058863689999904999199999789849999
Q 000685 320 HPRAPNLDILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISE 397 (1352)
Q Consensus 320 iafspdg~lLS~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~I~~Ia~sp~~~~lLatGs~DG~Ilri 397 (1352)
+.|. ...+++++.|+. +|+...+. ....+.+|.. .|++++|+| ++.++++++.||.| ++
T Consensus 290 ~~~~-~~~l~s~s~d~~i~~~~~~~~~---------------~~~~~~gh~~-~v~~l~~sp-dg~~l~s~s~D~~v-~~ 350 (611)
T 1nr0_A 290 IIWT-KQALVSISANGFINFVNPELGS---------------IDQVRYGHNK-AITALSSSA-DGKTLFSADAEGHI-NS 350 (611)
T ss_dssp EEEC-SSCEEEEETTCCEEEEETTTTE---------------EEEEECCCSS-CEEEEEECT-TSSEEEEEETTSCE-EE
T ss_pred EEEC-CCEEEEEECCCCEEEEECCCCC---------------CCEEECCCCC-CEEEEEEEC-CCCEEEEEECCCCE-EE
T ss_conf 9973-8879999589968999688997---------------4469837888-889999918-99989999589849-99
Q ss_pred ECCCCCCC
Q ss_conf 55899997
Q 000685 398 FDPRSLPA 405 (1352)
Q Consensus 398 Wd~~s~p~ 405 (1352)
||......
T Consensus 351 Wd~~~~~~ 358 (611)
T 1nr0_A 351 WDISTGIS 358 (611)
T ss_dssp EETTTCCE
T ss_pred EECCCCCE
T ss_conf 97887925
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=341.07 Aligned_cols=402 Identities=13% Similarity=0.116 Sum_probs=302.5
Q ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCEEEEC--CCCCEEEECCCCCCCCCCCC
Q ss_conf 6993689998899999389999999968991999987988199998136755327743--56652573124557985300
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEA 81 (1352)
Q Consensus 4 l~~L~gHs~~V~sIafSPdg~~LaTgs~DG~IrIWDl~tg~~i~tl~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~~ 81 (1352)
...+.+|.+.|++++|+|++++|++|+.||.|++||..+++.+.++. +|...+.++. ++++++++++
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~---------- 676 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK-AHEDEVLCCAFSSDDSYIATCS---------- 676 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEE----------
T ss_pred EEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEC-CCCCCEEEEEEECCCCEEEEEE----------
T ss_conf 27871666648999987999989999488949999989997888760-6777789999926999899981----------
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC-EEEEEEECCCEE-EEEEECCCCCCCCC
Q ss_conf 2598437998709929999867754113356510246888866311068999-299999659599-99910796100341
Q 000685 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGR-HFLVICCVNKAI-FLDLVTMRGRDIPK 159 (1352)
Q Consensus 82 l~~g~V~sVaF~Dg~IrIWDl~t~~~i~~~~~~~~~~~~~~V~siafspdg~-~lLvsgs~D~~I-~wDl~t~~~~~i~~ 159 (1352)
.|+.|++||+.+++++ ....+| ...|.+++|++++. .++++++.|+.+ +||+.++++ +..
T Consensus 677 -----------~d~~v~vwd~~~~~~~----~~~~~~-~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~--~~~ 738 (1249)
T 3sfz_A 677 -----------ADKKVKIWDSATGKLV----HTYDEH-SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC--RNT 738 (1249)
T ss_dssp -----------TTSEEEEEETTTCCEE----EEEECC-SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE--EEE
T ss_pred -----------CCCEEEEEECCCCCEE----EEECCC-CCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCH--HHE
T ss_conf -----------8995999877999368----999589-9737999984089965999980897099998999634--220
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCEEEEEEEC------------CCCCCEEEEEEEEECCCC
Q ss_conf 12589983799991224369999999998899299997799859999906------------778770499986637999
Q 000685 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTG------------GHKGSISCLMTFMASSGE 227 (1352)
Q Consensus 160 ~~~h~~~V~~Iaf~P~s~Spdg~~LvsGs~DGtIrIWDl~t~~~i~~l~~------------gH~~~V~sI~wf~~s~dg 227 (1352)
...|...|+++.| ++++.++++++.||.|++||+.+++....+.. .+...+.+++ +++++
T Consensus 739 ~~~h~~~v~~~~~-----sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~s~dg 810 (1249)
T 3sfz_A 739 MFGHTNSVNHCRF-----SPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCS---WSADG 810 (1249)
T ss_dssp ECCCSSCEEEEEE-----CSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCC---BCTTS
T ss_pred ECCCCCCEEEEEE-----ECCCCEEEEEECCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEE---ECCCC
T ss_conf 1277797889999-----259998999978985999968888655302023210246776445650179999---97899
Q ss_pred CEEEEEECCCCEEEEECCCCCCCCEECCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCEEEEECCCCEEEEEECCC
Q ss_conf 99999959990999967999842100132011134666499995102799999999979992999989998278884687
Q 000685 228 ALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPV 307 (1352)
Q Consensus 228 ~~LaSgS~DGtIrIWDl~sg~~~~~~~~~~~l~gH~~~V~sIafsp~~~dg~~LvSgs~Dg~I~IWDl~tg~~l~~l~~~ 307 (1352)
..+++++ ++.+.+||+.++.....+ ..+|...|.+++|+| ++.++++++.|+.|++||+.++..+..
T Consensus 811 ~~l~~~~-~~~v~~~d~~~~~~~~~~-----~~~~~~~v~~~~~sp---~~~~l~~~~~dg~v~vwd~~~~~~~~~---- 877 (1249)
T 3sfz_A 811 DKIIVAA-KNKVLLFDIHTSGLLAEI-----HTGHHSTIQYCDFSP---YDHLAVIALSQYCVELWNIDSRLKVAD---- 877 (1249)
T ss_dssp SEEEEEE-TTEEEEEETTTCCEEEEE-----ECSSSSCCCEEEECS---STTEEEEECSSSCEEEEETTTTEEEEE----
T ss_pred CEEEEEC-CCCEEEEEECCCCCEEEE-----CCCCCCCEEEEEECC---CCCEEEEEECCCEEEEEECCCCCEEEE----
T ss_conf 8899975-895999995689723577-----478777607999827---888899994798699998678956532----
Q ss_pred CCCCCCCCCEEEEEECCCCCEE-EEECCCE--EEECCCCCCCCCCC-----------------------CCCCCCCCCCC
Q ss_conf 8546667760498747999899-9830872--99645786455666-----------------------74355788898
Q 000685 308 PKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTR-----------------------PLCELSSLVPP 361 (1352)
Q Consensus 308 ~~l~~hs~~V~siafspdg~lL-S~s~Dg~--IWDi~t~~~~~~~~-----------------------~l~~~~~~~~~ 361 (1352)
+.+|...|+++.|+|++..+ +++.|+. +|++.......... ...........
T Consensus 878 --~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 955 (1249)
T 3sfz_A 878 --CRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQ 955 (1249)
T ss_dssp --ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCC
T ss_pred --CCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCE
T ss_conf --278766568999989999899995897289887466520102113310368975998689981377624898447650
Q ss_pred EEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEEECCCCCC
Q ss_conf 17705886368999990499919999978984999955899997556689999988518999659299997640468888
Q 000685 362 QVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPLPTPSGSRDHSAVYIVERELKLVNFQLSSAANP 441 (1352)
Q Consensus 362 ~~l~~h~~~~I~~Ia~sp~~~~lLatGs~DG~IlriWd~~s~p~i~~l~~~s~s~~~~~~~~~~~~lkl~~f~~~~~~n~ 441 (1352)
....... .+.+++|+| ++.++++|+.+|.| ++|+.........+...
T Consensus 956 -~~~~~~~-~i~~~~~sp-~g~~l~~g~~~g~i-~i~d~~~~~~~~~~~~h----------------------------- 1002 (1249)
T 3sfz_A 956 -IDYLPEA-QVSCCCLSP-HLEYVAFGDEDGAI-KIIELPNNRVFSSGVGH----------------------------- 1002 (1249)
T ss_dssp -EEEECCS-CEEEEEECT-TSSEEEEEETTSCC-EEEETTTTSCEEECCCC-----------------------------
T ss_pred -EEECCCC-CEEEEEECC-CCCEEEEECCCCCE-EEEECCCCCEEEECCCC-----------------------------
T ss_conf -8972567-278999958-99779998699988-99975787234430367-----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCEEEE----CC
Q ss_conf 88888522568863489950356652023333557889841899938999899998899928999927823742----16
Q 000685 442 SLGNNGSLSETGRLKGDLPDALQIKQIKKHISTPVPHDSYSILSVSSSGKYLAVVWPDIPYFSVYKVSDWSIVD----SG 517 (1352)
Q Consensus 442 ~lg~~~~~S~~Gk~~~~~~~el~v~~~~k~i~t~~~~e~~s~l~~S~dGkyIav~~~~~g~~~Iy~is~~~~i~----~G 517 (1352)
......+.++++|+++ +....++.+.+|++....... .+
T Consensus 1003 ------------------------------------~~~v~~l~~s~dg~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~ 1045 (1249)
T 3sfz_A 1003 ------------------------------------KKAVRHIQFTADGKTL-ISSSEDSVIQVWNWQTGDYVFLQAHQE 1045 (1249)
T ss_dssp ------------------------------------SSCCCCEEECSSSSCE-EEECSSSBEEEEETTTTEEECCBCCSS
T ss_pred ------------------------------------CCCEEEEEECCCCCEE-EEECCCCEEEEEECCCCCEEEEECCCC
T ss_conf ------------------------------------7716899998999989-998699879999879996689852787
Q ss_pred CEEEEEECCC
Q ss_conf 2549985059
Q 000685 518 SARLLAWDTC 527 (1352)
Q Consensus 518 ~~~~iaW~~~ 527 (1352)
....++|+++
T Consensus 1046 ~v~~~~~~~~ 1055 (1249)
T 3sfz_A 1046 TVKDFRLLQD 1055 (1249)
T ss_dssp CEEEEEECSS
T ss_pred CEEEEEECCC
T ss_conf 3899999089
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=324.09 Aligned_cols=336 Identities=17% Similarity=0.210 Sum_probs=184.0
Q ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCEEEEC--C--CCCEEEECCCCCCCCCC
Q ss_conf 6993689998899999389999999968991999987988199998136755327743--5--66525731245579853
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--A--KLEKLAEGELEHKGKPT 79 (1352)
Q Consensus 4 l~~L~gHs~~V~sIafSPdg~~LaTgs~DG~IrIWDl~tg~~i~tl~~~~~~~i~~vs--~--dg~~Lasgs~d~~g~~l 79 (1352)
++.+.+|.+.|.+++|+|++++|++++.|+.|++||+.+++++..+. +|...+.++. + +...+++++
T Consensus 650 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~sg~-------- 720 (1249)
T 3sfz_A 650 LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD-EHSEQVNCCHFTNKSNHLLLATGS-------- 720 (1249)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSSCCEEEEEE--------
T ss_pred EEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEC-CCCCCEEEEEEECCCCCEEEEEEE--------
T ss_conf 88760677778999992699989998189959998779993689995-899737999984089965999980--------
Q ss_pred CCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCEE-EEEEECCCCCCCC
Q ss_conf 002598437998709929999867754113356510246888866311068999299999659599-9991079610034
Q 000685 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIP 158 (1352)
Q Consensus 80 ~~l~~g~V~sVaF~Dg~IrIWDl~t~~~i~~~~~~~~~~~~~~V~siafspdg~~lLvsgs~D~~I-~wDl~t~~~~~i~ 158 (1352)
.|+.+++||+.++++. ....+| ...|.+++|+|+++ ++++++.|+.+ +||+.++......
T Consensus 721 -------------~d~~v~vwd~~~~~~~----~~~~~h-~~~v~~~~~sp~~~-~l~s~s~dg~v~vwd~~~~~~~~~~ 781 (1249)
T 3sfz_A 721 -------------NDFFLKLWDLNQKECR----NTMFGH-TNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSI 781 (1249)
T ss_dssp -------------TTSCEEEEETTSSSEE----EEECCC-SSCEEEEEECSSTT-EEEEEESSSEEEEEEGGGTEEEEEE
T ss_pred -------------CCCEEEEEECCCCCHH----HEECCC-CCCEEEEEEECCCC-EEEEEECCCEEEEEECCCCCCCCEE
T ss_conf -------------8970999989996342----201277-79788999925999-8999978985999968888655302
Q ss_pred CC-----------CCCCCCEEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCEEEEEEEEECCCC
Q ss_conf 11-----------2589983799991224369999999998899299997799859999906778770499986637999
Q 000685 159 KQ-----------ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGE 227 (1352)
Q Consensus 159 ~~-----------~~h~~~V~~Iaf~P~s~Spdg~~LvsGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~sI~wf~~s~dg 227 (1352)
.. ......+.++.| ++++..+++++ ++.+.+||..++.....+..+|...+.+++ +++++
T Consensus 782 ~~~~~~~~~~~~~~~~~~~v~~~~~-----s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~---~sp~~ 852 (1249)
T 3sfz_A 782 NVKRFFLSSEDPPEDVEVIVKCCSW-----SADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCD---FSPYD 852 (1249)
T ss_dssp ECCCCC--------CCCCCBCCCCB-----CTTSSEEEEEE-TTEEEEEETTTCCEEEEEECSSSSCCCEEE---ECSST
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEEE-----CCCCCEEEEEC-CCCEEEEEECCCCCEEEECCCCCCCEEEEE---ECCCC
T ss_conf 0232102467764456501799999-----78998899975-895999995689723577478777607999---82788
Q ss_pred CEEEEEECCCCEEEEECCCCCCCCEECCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCEEEEECCCCEE-------
Q ss_conf 9999995999099996799984210013201113466649999510279999999997999299998999827-------
Q 000685 228 ALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKE------- 300 (1352)
Q Consensus 228 ~~LaSgS~DGtIrIWDl~sg~~~~~~~~~~~l~gH~~~V~sIafsp~~~dg~~LvSgs~Dg~I~IWDl~tg~~------- 300 (1352)
..+++++.||.|++|++.++..... +.+|...|.+++|+| ++.++++++.|+.|++|++.+...
T Consensus 853 ~~l~~~~~dg~v~vwd~~~~~~~~~------~~~h~~~v~~v~~sp---dg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~ 923 (1249)
T 3sfz_A 853 HLAVIALSQYCVELWNIDSRLKVAD------CRGHLSWVHGVMFSP---DGSSFLTASDDQTIRVWETKKVCKNSAIVLK 923 (1249)
T ss_dssp TEEEEECSSSCEEEEETTTTEEEEE------ECCCSSCEEEEEECT---TSSEEEEEETTSCEEEEEHHHHHSCCSSSEE
T ss_pred CEEEEEECCCEEEEEECCCCCEEEE------CCCCCCCEEEEEECC---CCCEEEEEECCCEEEEEECCCCCEEEEECCC
T ss_conf 8899994798699998678956532------278766568999989---9998999958972898874665201021133
Q ss_pred ------------------------EEEECCCCCCCCCCCCEEEEEECCCCCEE-EEECCCE--EEECCCCCCCCCCCCCC
Q ss_conf ------------------------88846878546667760498747999899-9830872--99645786455666743
Q 000685 301 ------------------------LRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLC 353 (1352)
Q Consensus 301 ------------------------l~~l~~~~~l~~hs~~V~siafspdg~lL-S~s~Dg~--IWDi~t~~~~~~~~~l~ 353 (1352)
............+...+.+++|+|++.++ +++.||. +|++.++.
T Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~--------- 994 (1249)
T 3sfz_A 924 QEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR--------- 994 (1249)
T ss_dssp EEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTS---------
T ss_pred CEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCC---------
T ss_conf 10368975998689981377624898447650897256727899995899779998699988999757872---------
Q ss_pred CCCCCCCCEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 55788898177058863689999904999199999789849999558999
Q 000685 354 ELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSL 403 (1352)
Q Consensus 354 ~~~~~~~~~~l~~h~~~~I~~Ia~sp~~~~lLatGs~DG~IlriWd~~s~ 403 (1352)
....+..|.. .|.+++|+| ++.++++++.||.| ++|+....
T Consensus 995 ------~~~~~~~h~~-~v~~l~~s~-dg~~l~s~~~dg~i-~vwd~~~~ 1035 (1249)
T 3sfz_A 995 ------VFSSGVGHKK-AVRHIQFTA-DGKTLISSSEDSVI-QVWNWQTG 1035 (1249)
T ss_dssp ------CEEECCCCSS-CCCCEEECS-SSSCEEEECSSSBE-EEEETTTT
T ss_pred ------EEEECCCCCC-CEEEEEECC-CCCEEEEECCCCEE-EEEECCCC
T ss_conf ------3443036777-168999989-99989998699879-99987999
No 5
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=323.15 Aligned_cols=433 Identities=11% Similarity=0.112 Sum_probs=302.1
Q ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC--EEEEEECCCCCCEEEEC--CCCCEEEECCCCCCCCCC
Q ss_conf 69936899988999993899999999689919999879881--99998136755327743--566525731245579853
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQ--VIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPT 79 (1352)
Q Consensus 4 l~~L~gHs~~V~sIafSPdg~~LaTgs~DG~IrIWDl~tg~--~i~tl~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l 79 (1352)
++.|.+|.+.|++++|+|+|++|++|+.|++|+|||+.+++ ....+. +|...+..+. ++++.|++++.+..
T Consensus 52 ~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~-~~~~~v~~v~fs~dg~~l~~~~~~~~---- 126 (611)
T 1nr0_A 52 TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP-VFSGPVKDISWDSESKRIAAVGEGRE---- 126 (611)
T ss_dssp CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEE-CSSSCEEEEEECTTSCEEEEEECCSS----
T ss_pred CEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEEEC-CCCCCEEEEEECCCCCEEEEEECCCC----
T ss_conf 7376589986599999999968999948997899489898415667622-55784489998999997999989977----
Q ss_pred CCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCEE-EEEEECCCCCCCC
Q ss_conf 002598437998709929999867754113356510246888866311068999299999659599-9991079610034
Q 000685 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIP 158 (1352)
Q Consensus 80 ~~l~~g~V~sVaF~Dg~IrIWDl~t~~~i~~~~~~~~~~~~~~V~siafspdg~~lLvsgs~D~~I-~wDl~t~~~~~i~ 158 (1352)
.++.+++||. +... ....+| ...|.+++|+|+++..+++++.|+.+ +||..++++ ..
T Consensus 127 -------------~~~~v~~wd~--~~~~----~~l~gh-~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~--~~ 184 (611)
T 1nr0_A 127 -------------RFGHVFLFDT--GTSN----GNLTGQ-ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF--KS 184 (611)
T ss_dssp -------------CSEEEEETTT--CCBC----BCCCCC-SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE--EE
T ss_pred -------------CEEEEEEEEC--CCCC----CEECCC-CCCCEEEEECCCCCEEEEEEECCCEEEEEECCCCEE--EE
T ss_conf -------------3669999638--9976----325478-898369998899982999992898099997999757--66
Q ss_pred CCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCEEEEEEEC------CCCCCEEEEEEEEECCCCCEEEE
Q ss_conf 112589983799991224369999999998899299997799859999906------77877049998663799999999
Q 000685 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTG------GHKGSISCLMTFMASSGEALLVS 232 (1352)
Q Consensus 159 ~~~~h~~~V~~Iaf~P~s~Spdg~~LvsGs~DGtIrIWDl~t~~~i~~l~~------gH~~~V~sI~wf~~s~dg~~LaS 232 (1352)
.+..|...|++++| +|++.++++|+.|++|++||..+++.+..+.. +|.+.|.+++ ++|++.+|++
T Consensus 185 ~l~~H~~~V~~v~f-----spdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~---~spdg~~l~s 256 (611)
T 1nr0_A 185 TFGEHTKFVHSVRY-----NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT---WSPDGTKIAS 256 (611)
T ss_dssp EECCCSSCEEEEEE-----CTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEE---ECTTSSEEEE
T ss_pred EECCCCCCEEEEEE-----CCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEE---ECCCCCEEEE
T ss_conf 52002571699999-----799998999989991999889998286651366432356678789999---9799999999
Q ss_pred EECCCCEEEEECCCCCCCCEECCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCCC
Q ss_conf 95999099996799984210013201113466649999510279999999997999299998999827888468785466
Q 000685 233 GGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLAC 312 (1352)
Q Consensus 233 gS~DGtIrIWDl~sg~~~~~~~~~~~l~gH~~~V~sIafsp~~~dg~~LvSgs~Dg~I~IWDl~tg~~l~~l~~~~~l~~ 312 (1352)
++.|++|++||+.++++...+... ..+...+..+.| ++..+++++.|+.+++|+...+.+.+. +.+
T Consensus 257 ~s~D~~v~lWd~~~~~~~~~~~~~---~~~~~~~~~~~~-----~~~~l~s~s~d~~i~~~~~~~~~~~~~------~~g 322 (611)
T 1nr0_A 257 ASADKTIKIWNVATLKVEKTIPVG---TRIEDQQLGIIW-----TKQALVSISANGFINFVNPELGSIDQV------RYG 322 (611)
T ss_dssp EETTSEEEEEETTTTEEEEEEECC---SSGGGCEEEEEE-----CSSCEEEEETTCCEEEEETTTTEEEEE------ECC
T ss_pred EECCCEEEEEECCCCCEEEEECCC---CCCCCEEEEEEE-----CCCEEEEEECCCCEEEEECCCCCCCEE------ECC
T ss_conf 908980999968887013440478---876640689997-----388799995899689996889974469------837
Q ss_pred CCCCEEEEEECCCCCEE-EEECCCE--EEECCCCCCCCCCCCCCCCCCCCCCEEE-ECCCCCCEEEEEEECCCCCEEEEE
Q ss_conf 67760498747999899-9830872--9964578645566674355788898177-058863689999904999199999
Q 000685 313 HSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVL-AHHKKLRVYCMVAHSLQPHLVATG 388 (1352)
Q Consensus 313 hs~~V~siafspdg~lL-S~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l-~~h~~~~I~~Ia~sp~~~~lLatG 388 (1352)
|...|++++|+|++.+| +++.|++ +||+.++.. ...+ ..|.. .|.++.|++ ++. ++++
T Consensus 323 h~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~---------------~~~~~~~h~~-~v~~~~~s~-~~~-l~s~ 384 (611)
T 1nr0_A 323 HNKAITALSSSADGKTLFSADAEGHINSWDISTGIS---------------NRVFPDVHAT-MITGIKTTS-KGD-LFTV 384 (611)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---------------EECSSCSCSS-CEEEEEECT-TSC-EEEE
T ss_pred CCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCE---------------EEECCCCCCC-EEEEEEECC-CCC-EEEE
T ss_conf 888889999918999899995898499997887925---------------6321667765-078999878-996-9999
Q ss_pred ECCCEEEEEECCCCCCCCCCCC---CCCCCCCCEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 7898499995589999755668---9999988518999659299997640468888888885225688634899503566
Q 000685 389 TNVGVIISEFDPRSLPAVAPLP---TPSGSRDHSAVYIVERELKLVNFQLSSAANPSLGNNGSLSETGRLKGDLPDALQI 465 (1352)
Q Consensus 389 s~DG~IlriWd~~s~p~i~~l~---~~s~s~~~~~~~~~~~~lkl~~f~~~~~~n~~lg~~~~~S~~Gk~~~~~~~el~v 465 (1352)
+.|+.+ ++|+........... ..... ...+.+..++...+ .+.++. +.+
T Consensus 385 s~d~~v-~~w~~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~~~------------------~~~~~~--------v~~ 436 (611)
T 1nr0_A 385 SWDDHL-KVVPAGGSGVDSSKAVANKLSSQ-PLGLAVSADGDIAV------------------AACYKH--------IAI 436 (611)
T ss_dssp ETTTEE-EEECSSSSSSCTTSCCEEECSSC-EEEEEECTTSSCEE------------------EEESSE--------EEE
T ss_pred ECCCCE-EEEECCCCCCCCCCEEEEECCCC-CCEEEEECCCCEEE------------------EEECCE--------EEE
T ss_conf 848966-89546885435652120014899-70799807996999------------------996763--------999
Q ss_pred HHCCCCCCC-CCCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCEE------EECCCEEEEEECCCCCEEEEE
Q ss_conf 520233335-578898418999389998999988999289999278237------421625499850599818998
Q 000685 466 KQIKKHIST-PVPHDSYSILSVSSSGKYLAVVWPDIPYFSVYKVSDWSI------VDSGSARLLAWDTCRDRFAIL 534 (1352)
Q Consensus 466 ~~~~k~i~t-~~~~e~~s~l~~S~dGkyIav~~~~~g~~~Iy~is~~~~------i~~G~~~~iaW~~~~~~favl 534 (1352)
....+ +.. ..... ...+.+||||+++ +....++.+.+|++..... ...+.+..++|++++..++.-
T Consensus 437 ~~~~~-~~~~~~~~~-v~~va~spdg~~l-asgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~ 509 (611)
T 1nr0_A 437 YSHGK-LTEVPISYN-SSCVALSNDKQFV-AVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVAT 509 (611)
T ss_dssp EETTE-EEEEECSSC-EEEEEECTTSCEE-EEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred EECCC-EEEEECCCC-CEEEEEECCCCEE-EEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCCEEEEE
T ss_conf 84894-346406889-5499992899899-9968997399999459922241015778860799998999989999
No 6
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=322.07 Aligned_cols=320 Identities=18% Similarity=0.265 Sum_probs=241.6
Q ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCEEEEC--CCCCEEEECCCCCCCCCCCC
Q ss_conf 6993689998899999389999999968991999987988199998136755327743--56652573124557985300
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEA 81 (1352)
Q Consensus 4 l~~L~gHs~~V~sIafSPdg~~LaTgs~DG~IrIWDl~tg~~i~tl~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~~ 81 (1352)
.+.|+||++.|++++|||+|++|++|+.|+.|+||| .+++++.++. +|...+.++. |++++|++++
T Consensus 9 ~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd-~~~~~~~~l~-gh~~~V~~l~fspdg~~las~~---------- 76 (577)
T 2ymu_A 9 RNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT-GHSSSVWGVAFSPDGQTIASAS---------- 76 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC-TTSCEEEEEE-CCSSCEEEEEECTTSSEEEEEE----------
T ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE-CCCCEEEEEE-CCCCCEEEEEECCCCCEEEEEE----------
T ss_conf 439878998579999989989999993899899997-9997899996-8989989999989999999996----------
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCEEEE-EEECCCCCCCCCC
Q ss_conf 259843799870992999986775411335651024688886631106899929999965959999-9107961003411
Q 000685 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQ 160 (1352)
Q Consensus 82 l~~g~V~sVaF~Dg~IrIWDl~t~~~i~~~~~~~~~~~~~~V~siafspdg~~lLvsgs~D~~I~w-Dl~t~~~~~i~~~ 160 (1352)
.|+.|++||.. ++++ ....+| ...|.+++|+|+++ ++++++.|+.+++ +..... ....
T Consensus 77 -----------~d~~i~vWd~~-~~~~----~~~~~~-~~~v~~~~~s~d~~-~l~~~~~d~~~~~~~~~~~~---~~~~ 135 (577)
T 2ymu_A 77 -----------DDKTVKLWNRN-GQLL----QTLTGH-SSSVRGVAFSPDGQ-TIASASDDKTVKLWNRNGQL---LQTL 135 (577)
T ss_dssp -----------TTSCEEEEETT-SCEE----EEECCC-SSCEEEEEECTTSS-EEEEEETTSCEEEEETTCCE---EEEE
T ss_pred -----------CCCEEEEEECC-CCEE----EEEECC-CCCEEEEEECCCCC-EEEEECCCCCEEECCCCCCE---EEEC
T ss_conf -----------98979999899-9789----999789-99889999989999-89998079833520235520---0110
Q ss_pred CCCCCCEEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCEEEEEEEEECCCCCEEEEEECCCCEE
Q ss_conf 25899837999912243699999999988992999977998599999067787704999866379999999995999099
Q 000685 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240 (1352)
Q Consensus 161 ~~h~~~V~~Iaf~P~s~Spdg~~LvsGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~sI~wf~~s~dg~~LaSgS~DGtIr 240 (1352)
..+...+.++.+ ++++..++.++.++.+++|+..... ..... .|...|.++. +++++..+++++.|+.|+
T Consensus 136 ~~~~~~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~v~~~~---~~~~~~~l~~~~~d~~v~ 205 (577)
T 2ymu_A 136 TGHSSSVWGVAF-----SPDGQTIASASDDKTVKLWNRNGQL-LQTLT-GHSSSVWGVA---FSPDGQTIASASDDKTVK 205 (577)
T ss_dssp CCCSSCEEEEEE-----CTTSSCEEEEETTSEEEEECTTSCE-EEEEE-CCSSCEEEEE---ECTTSSCEEEEETTSEEE
T ss_pred CCCCCCEEEEEE-----ECCCCCCEECCCCCCEECCCCCEEE-EEECC-CCCCCEEEEE---ECCCCCEEEEECCCCEEE
T ss_conf 477774355542-----0377632002555310000000000-00026-8776356654---169977899985999899
Q ss_pred EEECCCCCCCCEECCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCCCCCCCEEEE
Q ss_conf 99679998421001320111346664999951027999999999799929999899982788846878546667760498
Q 000685 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCH 320 (1352)
Q Consensus 241 IWDl~sg~~~~~~~~~~~l~gH~~~V~sIafsp~~~dg~~LvSgs~Dg~I~IWDl~tg~~l~~l~~~~~l~~hs~~V~si 320 (1352)
+||.. ++.... +.+|...|.+++|+| ++.+|++++.|+.|++||.. ++.+.. +.+|...|.++
T Consensus 206 ~w~~~-~~~~~~------~~~~~~~v~~~~~s~---dg~~l~~~~~d~~i~~w~~~-~~~~~~------~~~~~~~v~~v 268 (577)
T 2ymu_A 206 LWNRN-GQLLQT------LTGHSSSVRGVAFSP---DGQTIASASDDKTVKLWNRN-GQLLQT------LTGHSSSVNGV 268 (577)
T ss_dssp EECTT-SCEEEE------EECCSSCEEEEEECT---TSSCEEEEETTSCEEEECTT-SCEEEE------ECCCSSCEEEE
T ss_pred EEECC-CCEEEE------EECCCCCEEEEEECC---CCCEEEEEECCCEEEEEECC-CCEEEE------EECCCCCEEEE
T ss_conf 99499-968999------946889889999979---99999999189989999599-979999------80688987999
Q ss_pred EECCCCCEE-EEECCCE--EEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 747999899-9830872--9964578645566674355788898177058863689999904999199999789849999
Q 000685 321 PRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISE 397 (1352)
Q Consensus 321 afspdg~lL-S~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~I~~Ia~sp~~~~lLatGs~DG~Ilri 397 (1352)
.|+|++..+ +++.|+. +|+.... ....+.+|.. .|++++|+| ++.++++++.||.+ ++
T Consensus 269 ~~~~d~~~l~~~~~d~~i~~w~~~~~----------------~~~~~~~h~~-~v~~~~~~~-~~~~l~t~~~d~~i-~~ 329 (577)
T 2ymu_A 269 AFRPDGQTIASASDDKTVKLWNRNGQ----------------LLQTLTGHSS-SVWGVAFSP-DGQTIASASDDKTV-KL 329 (577)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTSC----------------EEEEECCCSS-CEEEEEECT-TSSEEEEEETTSCE-EE
T ss_pred EECCCCCEEEEEECCCEEEEEECCCC----------------EEEEEECCCC-CEEEEEECC-CCCEEEEEECCCEE-EE
T ss_conf 99689999999959997999948995----------------8999706889-769999999-99999999699959-99
Q ss_pred ECCCC
Q ss_conf 55899
Q 000685 398 FDPRS 402 (1352)
Q Consensus 398 Wd~~s 402 (1352)
|+...
T Consensus 330 w~~~~ 334 (577)
T 2ymu_A 330 WNRNG 334 (577)
T ss_dssp EETTS
T ss_pred EECCC
T ss_conf 96999
No 7
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=315.75 Aligned_cols=289 Identities=19% Similarity=0.301 Sum_probs=236.0
Q ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCEEEECCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 69936899988999993899999999689919999879881999981367553277435665257312455798530025
Q 000685 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1352)
Q Consensus 4 l~~L~gHs~~V~sIafSPdg~~LaTgs~DG~IrIWDl~tg~~i~tl~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l~ 83 (1352)
...+.+|.+.|++++|+|++++|++|+.||+|+|||+.+++.+..+.
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~--------------------------------- 147 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK--------------------------------- 147 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC---------------------------------
T ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE---------------------------------
T ss_conf 07661667768999996999989999389859999899993778881---------------------------------
Q ss_pred CCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCEE-EEEEECCCCCCCCCCCC
Q ss_conf 98437998709929999867754113356510246888866311068999299999659599-99910796100341125
Q 000685 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1352)
Q Consensus 84 ~g~V~sVaF~Dg~IrIWDl~t~~~i~~~~~~~~~~~~~~V~siafspdg~~lLvsgs~D~~I-~wDl~t~~~~~i~~~~~ 162 (1352)
+| ...|.+++|+++++ ++++|+.|+.+ +||+.++++ +.....
T Consensus 148 ---------------------------------~h-~~~V~~v~~~~~~~-~l~sgs~D~~i~iwd~~~~~~--~~~~~~ 190 (410)
T 1vyh_C 148 ---------------------------------GH-TDSVQDISFDHSGK-LLASCSADMTIKLWDFQGFEC--IRTMHG 190 (410)
T ss_dssp ---------------------------------CC-SSCEEEEEECTTSS-EEEEEETTSCCCEEETTSSCE--EECCCC
T ss_pred ---------------------------------CC-CCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCCE--EEEECC
T ss_conf ---------------------------------66-78687899859999-999991898199995899826--699828
Q ss_pred CCCCEEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCEEEEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf 89983799991224369999999998899299997799859999906778770499986637999999999599909999
Q 000685 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1352)
Q Consensus 163 h~~~V~~Iaf~P~s~Spdg~~LvsGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~sI~wf~~s~dg~~LaSgS~DGtIrIW 242 (1352)
|...|.++.| +|++.++++|+.|++|++||++++.++..+. +|...|.++. +++++.+|++|+.|++|++|
T Consensus 191 h~~~V~~v~~-----~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~-~h~~~v~~~~---~~~~g~~l~s~s~D~~v~vw 261 (410)
T 1vyh_C 191 HDHNVSSVSI-----MPNGDHIVSASRDKTIKMWEVQTGYCVKTFT-GHREWVRMVR---PNQDGTLIASCSNDQTVRVW 261 (410)
T ss_dssp CSSCEEEEEE-----CSSSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEE---ECTTSSEEEEEETTSCEEEE
T ss_pred CCCCEEEEEE-----ECCCCEEEEEECCCEEEEEECCCCCEEEEEE-CCCCCEEEEE---ECCCCCEEEEECCCCEEEEE
T ss_conf 9997789999-----6799999999689969999899994899992-7886289999---98999999999189909999
Q ss_pred ECCCCCCCCEECCCCCCCCCCCCEEEEEEECCCC-----------------CCCEEEEEECCCCEEEEECCCCEEEEEEC
Q ss_conf 6799984210013201113466649999510279-----------------99999999799929999899982788846
Q 000685 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMG-----------------GSPQLITIGADKTLAIWDTVSFKELRRIK 305 (1352)
Q Consensus 243 Dl~sg~~~~~~~~~~~l~gH~~~V~sIafsp~~~-----------------dg~~LvSgs~Dg~I~IWDl~tg~~l~~l~ 305 (1352)
|+.++.+... +.+|...|.++.|+|... .+.+|++|+.|+.|++||+.++.++..
T Consensus 262 d~~~~~~~~~------~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~-- 333 (410)
T 1vyh_C 262 VVATKECKAE------LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT-- 333 (410)
T ss_dssp ETTTCCEEEE------ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE--
T ss_pred ECCCCCEEEE------ECCCCCEEEEEEECCCCCCCCHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEE--
T ss_conf 8989743667------33787458999985865543101212555556678888999993898499998899966999--
Q ss_pred CCCCCCCCCCCEEEEEECCCCC-EEEEECCCE--EEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCC
Q ss_conf 8785466677604987479998-999830872--9964578645566674355788898177058863689999904999
Q 000685 306 PVPKLACHSVASWCHPRAPNLD-ILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQP 382 (1352)
Q Consensus 306 ~~~~l~~hs~~V~siafspdg~-lLS~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~I~~Ia~sp~~~ 382 (1352)
+.+|...|+++.|+|++. +++++.|+. +||+.++ .....+..|.. .|++++|+| ++
T Consensus 334 ----~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~---------------~~~~~~~~h~~-~v~~l~~~~-~~ 392 (410)
T 1vyh_C 334 ----LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK---------------RCMKTLNAHEH-FVTSLDFHK-TA 392 (410)
T ss_dssp ----EECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS---------------CCCEEEECCSS-CEEEEEECS-SS
T ss_pred ----EECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC---------------CEEEEECCCCC-CEEEEEECC-CC
T ss_conf ----9778885899999499899999959792999989999---------------06899847778-689999828-99
Q ss_pred CEEEEEECCCEEEEEECCC
Q ss_conf 1999997898499995589
Q 000685 383 HLVATGTNVGVIISEFDPR 401 (1352)
Q Consensus 383 ~lLatGs~DG~IlriWd~~ 401 (1352)
.++++|+.||.| ++|+.+
T Consensus 393 ~~l~sgs~D~~i-~vW~~r 410 (410)
T 1vyh_C 393 PYVVTGSVDQTV-KVWECR 410 (410)
T ss_dssp SCEEEEETTSEE-EEEC--
T ss_pred CEEEEEECCCCE-EEEECC
T ss_conf 999999279948-997379
No 8
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=312.65 Aligned_cols=320 Identities=19% Similarity=0.290 Sum_probs=209.0
Q ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCEEEEC--CCCCEEEECCCCCCCCCCC
Q ss_conf 36993689998899999389999999968991999987988199998136755327743--5665257312455798530
Q 000685 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTE 80 (1352)
Q Consensus 3 ~l~~L~gHs~~V~sIafSPdg~~LaTgs~DG~IrIWDl~tg~~i~tl~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~ 80 (1352)
.+++|.+|.+.|++++|+|++++|++++.|++|+|||. +++++..+. +|...+..+. ++++.+++++
T Consensus 49 ~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~--------- 117 (577)
T 2ymu_A 49 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVRGVAFSPDGQTIASAS--------- 117 (577)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEEC-CCSSCEEEEEECTTSSEEEEEE---------
T ss_pred EEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEEE-CCCCCEEEEEECCCCCEEEEEC---------
T ss_conf 89999689899899999899999999969897999989-997899997-8999889999989999899980---------
Q ss_pred CCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCEEEEEEECCCCCCCCCC
Q ss_conf 02598437998709929999867754113356510246888866311068999299999659599999107961003411
Q 000685 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQ 160 (1352)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrIWDl~t~~~i~~~~~~~~~~~~~~V~siafspdg~~lLvsgs~D~~I~wDl~t~~~~~i~~~ 160 (1352)
.|+.+++|+....... ....+ ...+.++.|++++. .++.++.+..+.+...... .....
T Consensus 118 ------------~d~~~~~~~~~~~~~~-----~~~~~-~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~ 176 (577)
T 2ymu_A 118 ------------DDKTVKLWNRNGQLLQ-----TLTGH-SSSVWGVAFSPDGQ-TIASASDDKTVKLWNRNGQ--LLQTL 176 (577)
T ss_dssp ------------TTSCEEEEETTCCEEE-----EECCC-SSCEEEEEECTTSS-CEEEEETTSEEEEECTTSC--EEEEE
T ss_pred ------------CCCCEEECCCCCCEEE-----ECCCC-CCCEEEEEEECCCC-CCEECCCCCCEECCCCCEE--EEEEC
T ss_conf ------------7983352023552001-----10477-77435554203776-3200255531000000000--00002
Q ss_pred CCCCCCEEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCEEEEEEEEECCCCCEEEEEECCCCEE
Q ss_conf 25899837999912243699999999988992999977998599999067787704999866379999999995999099
Q 000685 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240 (1352)
Q Consensus 161 ~~h~~~V~~Iaf~P~s~Spdg~~LvsGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~sI~wf~~s~dg~~LaSgS~DGtIr 240 (1352)
..+...+.++.| ++++.++++++.|+.|++||. +++.+..+. +|...|.+++ +++++..|++++.|+.|+
T Consensus 177 ~~~~~~v~~~~~-----~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~-~~~~~v~~~~---~s~dg~~l~~~~~d~~i~ 246 (577)
T 2ymu_A 177 TGHSSSVWGVAF-----SPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVRGVA---FSPDGQTIASASDDKTVK 246 (577)
T ss_dssp ECCSSCEEEEEE-----CTTSSCEEEEETTSEEEEECT-TSCEEEEEE-CCSSCEEEEE---ECTTSSCEEEEETTSCEE
T ss_pred CCCCCCEEEEEE-----CCCCCEEEEECCCCEEEEEEC-CCCEEEEEE-CCCCCEEEEE---ECCCCCEEEEEECCCEEE
T ss_conf 687763566541-----699778999859998999949-996899994-6889889999---979999999991899899
Q ss_pred EEECCCCCCCCEECCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCCCCCCCEEEE
Q ss_conf 99679998421001320111346664999951027999999999799929999899982788846878546667760498
Q 000685 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCH 320 (1352)
Q Consensus 241 IWDl~sg~~~~~~~~~~~l~gH~~~V~sIafsp~~~dg~~LvSgs~Dg~I~IWDl~tg~~l~~l~~~~~l~~hs~~V~si 320 (1352)
+|+.. ++.+. .+.+|...|++++|+| ++..+++++.|+.|++|+.. ++.++. +.+|...|+++
T Consensus 247 ~w~~~-~~~~~------~~~~~~~~v~~v~~~~---d~~~l~~~~~d~~i~~w~~~-~~~~~~------~~~h~~~v~~~ 309 (577)
T 2ymu_A 247 LWNRN-GQLLQ------TLTGHSSSVNGVAFRP---DGQTIASASDDKTVKLWNRN-GQLLQT------LTGHSSSVWGV 309 (577)
T ss_dssp EECTT-SCEEE------EECCCSSCEEEEEECT---TSSEEEEEETTSCEEEEETT-SCEEEE------ECCCSSCEEEE
T ss_pred EEECC-CCEEE------EEECCCCCEEEEEECC---CCCEEEEEECCCEEEEEECC-CCEEEE------EECCCCCEEEE
T ss_conf 99599-97999------9806889879999968---99999999599979999489-958999------70688976999
Q ss_pred EECCCCCEE-EEECCCE--EEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 747999899-9830872--9964578645566674355788898177058863689999904999199999789849999
Q 000685 321 PRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISE 397 (1352)
Q Consensus 321 afspdg~lL-S~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~I~~Ia~sp~~~~lLatGs~DG~Ilri 397 (1352)
+|+|++..+ +++.|+. +|+..... ...+..|.. .+++++|+| ++.++++|+.||.+ ++
T Consensus 310 ~~~~~~~~l~t~~~d~~i~~w~~~~~~----------------~~~~~~~~~-~v~~~~~s~-~g~~l~~~~~dg~v-~~ 370 (577)
T 2ymu_A 310 AFSPDGQTIASASDDKTVKLWNRNGQH----------------LQTLTGHSS-SVWGVAFSP-DGQTIASASDDKTV-KL 370 (577)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTSCE----------------EEEECCCSS-CEEEEEECT-TSSEEEEEETTSEE-EE
T ss_pred EECCCCCEEEEEECCCEEEEEECCCCE----------------EEEEECCCC-CEEEEEECC-CCCEEEEEECCCEE-EE
T ss_conf 999999999999699959999699972----------------578747889-779999989-99999999699989-99
Q ss_pred ECC
Q ss_conf 558
Q 000685 398 FDP 400 (1352)
Q Consensus 398 Wd~ 400 (1352)
|+.
T Consensus 371 ~~~ 373 (577)
T 2ymu_A 371 WNR 373 (577)
T ss_dssp EET
T ss_pred ECC
T ss_conf 908
No 9
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=1.00 E-value=1 Score=308.51 Aligned_cols=253 Identities=13% Similarity=0.219 Sum_probs=200.1
Q ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCEEEEC--CCCCEEEECCCCCCCCCCC
Q ss_conf 36993689998899999389999999968991999987988199998136755327743--5665257312455798530
Q 000685 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTE 80 (1352)
Q Consensus 3 ~l~~L~gHs~~V~sIafSPdg~~LaTgs~DG~IrIWDl~tg~~i~tl~~~~~~~i~~vs--~dg~~Lasgs~d~~g~~l~ 80 (1352)
.++.+.+|...|++++|+|++++|++++.||.|++||+.+++.+..+. +|...+..+. ++++.+++++
T Consensus 47 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~--------- 116 (814)
T 3mkq_A 47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE-AHPDYIRSIAVHPTKPYVLSGS--------- 116 (814)
T ss_dssp EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSSEEEEEE---------
T ss_pred EEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEE-CCCCCEEEEEEECCCCEEEEEC---------
T ss_conf 677873389968899996899989999289949999899995879981-6899789999958999899992---------
Q ss_pred CCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECC-CCCEEEEEEECCCEE-EEEEECCCCCCCC
Q ss_conf 02598437998709929999867754113356510246888866311068-999299999659599-9991079610034
Q 000685 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPST-KGRHFLVICCVNKAI-FLDLVTMRGRDIP 158 (1352)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrIWDl~t~~~i~~~~~~~~~~~~~~V~siafsp-dg~~lLvsgs~D~~I-~wDl~t~~~~~i~ 158 (1352)
.|+.+++|++.++.... ....+| ...+.+++|+| ++. .+++++.|+.+ +||+.++.....
T Consensus 117 ------------~dg~i~vw~~~~~~~~~---~~~~~~-~~~v~~~~~~p~~~~-~l~~~~~dg~v~vwd~~~~~~~~~- 178 (814)
T 3mkq_A 117 ------------DDLTVKLWNWENNWALE---QTFEGH-EHFVMCVAFNPKDPS-TFASGCLDRTVKVWSLGQSTPNFT- 178 (814)
T ss_dssp ------------TTSEEEEEEGGGTSEEE---EEEECC-SSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCSSCSEE-
T ss_pred ------------CCCEEEEEECCCCCEEE---EEECCC-CCCEEEEEEECCCCC-EEEEEECCCEEEEEECCCCCCEEE-
T ss_conf ------------89989999899995487---998379-986889999769999-999994889499998999961069-
Q ss_pred CCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCEEEEEEEEECCCCCEEEEEECCCC
Q ss_conf 11258998379999122436999999999889929999779985999990677877049998663799999999959990
Q 000685 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL 238 (1352)
Q Consensus 159 ~~~~h~~~V~~Iaf~P~s~Spdg~~LvsGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~sI~wf~~s~dg~~LaSgS~DGt 238 (1352)
....+...+.++.|+| .+++.++++++.||.|++||+.+++.+..+. +|...|.+++ +++++..+++++.||.
T Consensus 179 ~~~~~~~~v~~~~~~~---~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~v~~~~---~~~~~~~l~~~~~dg~ 251 (814)
T 3mkq_A 179 LTTGQERGVNYVDYYP---LPDKPYMITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAV---FHPTLPIIISGSEDGT 251 (814)
T ss_dssp EECCCTTCCCEEEECC---STTCCEEEEECTTSEEEEEETTTTEEEEEEE-CCSSCEEEEE---ECSSSSEEEEEETTSC
T ss_pred EECCCCCCEEEEEEEE---CCCCCEEEEEECCCEEEEEECCCCCEEEEEC-CCCCCEEEEE---ECCCCCEEEEEECCCE
T ss_conf 8358889779999997---7999899999389979999999991889984-7888878999---8599999999908996
Q ss_pred EEEEECCCCCCCCEECCCCCCCCCCCCEEEEEEECCCCCCC-EEEEEECCCCEEEEECCCCE
Q ss_conf 99996799984210013201113466649999510279999-99999799929999899982
Q 000685 239 LILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSP-QLITIGADKTLAIWDTVSFK 299 (1352)
Q Consensus 239 IrIWDl~sg~~~~~~~~~~~l~gH~~~V~sIafsp~~~dg~-~LvSgs~Dg~I~IWDl~tg~ 299 (1352)
|++||+.+++.... +..|...+.+++|+| ++. .+++.+.|+.+.+|++....
T Consensus 252 v~vwd~~~~~~~~~------~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 252 LKIWNSSTYKVEKT------LNVGLERSWCIATHP---TGRKNYIASGFDNGFTVLSLGNDE 304 (814)
T ss_dssp EEEEETTTCSEEEE------ECCSSSSEEEEEECT---TCGGGEEEEEETTEEEEEECSCCS
T ss_pred EEEEECCCCCEEEE------EECCCCCEEEEEECC---CCCCEEEEEEECCCEEEEECCCCC
T ss_conf 99998999947778------406888679999924---999509999907987999767997
No 10
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=1.00 E-value=1 Score=298.04 Aligned_cols=288 Identities=19% Similarity=0.259 Sum_probs=242.0
Q ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCEEEECCCCCEEEECCCCCCCCCCCCC
Q ss_conf 36993689998899999389999999968991999987988199998136755327743566525731245579853002
Q 000685 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAM 82 (1352)
Q Consensus 3 ~l~~L~gHs~~V~sIafSPdg~~LaTgs~DG~IrIWDl~tg~~i~tl~~~~~~~i~~vs~dg~~Lasgs~d~~g~~l~~l 82 (1352)
..++|++|.+.|++++|+|++++|++++.||.|++||..+++.+..+..+
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~------------------------------ 96 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLR------------------------------ 96 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECS------------------------------
T ss_pred HHEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECC------------------------------
T ss_conf 10010487783689998899999999818896899989998743376038------------------------------
Q ss_pred CCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCEE-EEEEECCCC--CCCCC
Q ss_conf 598437998709929999867754113356510246888866311068999299999659599-999107961--00341
Q 000685 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRG--RDIPK 159 (1352)
Q Consensus 83 ~~g~V~sVaF~Dg~IrIWDl~t~~~i~~~~~~~~~~~~~~V~siafspdg~~lLvsgs~D~~I-~wDl~t~~~--~~i~~ 159 (1352)
...+.+++|+|+++ ++++++.|+.+ +|++.+... .....
T Consensus 97 -------------------------------------~~~v~~~~~s~~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~~ 138 (340)
T 1got_B 97 -------------------------------------SSWVMTCAYAPSGN-YVACGGLDNICSIYNLKTREGNVRVSRE 138 (340)
T ss_dssp -------------------------------------SSCEEEEEECTTSS-EEEEEETTCEEEEEETTTCSBSCEEEEE
T ss_pred -------------------------------------CCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCCCCCEEEEE
T ss_conf -------------------------------------86188999999999-9999808981999979668886136778
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCEEEEEEEEECCCCCEEEEEECCCCE
Q ss_conf 12589983799991224369999999998899299997799859999906778770499986637999999999599909
Q 000685 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1352)
Q Consensus 160 ~~~h~~~V~~Iaf~P~s~Spdg~~LvsGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~sI~wf~~s~dg~~LaSgS~DGtI 239 (1352)
...|...|.++.|. +++ .+++++.|+.|++||+.+++.+..+. +|...|.+++ +++++.++++|+.|++|
T Consensus 139 ~~~h~~~v~~~~~~-----~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~---~~~~~~~l~sg~~d~~v 208 (340)
T 1got_B 139 LAGHTGYLSCCRFL-----DDN-QIVTSSGDTTCALWDIETGQQTTTFT-GHTGDVMSLS---LAPDTRLFVSGACDASA 208 (340)
T ss_dssp EECCSSCEEEEEEE-----ETT-EEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEE---ECTTSSEEEEEETTSCE
T ss_pred ECCCCCCEEEEEEC-----CCC-CEEEEECCCCEEEEECCCCCEEEEEC-CCCCCEEEEE---ECCCCCEEEEEECCCCE
T ss_conf 44877638999987-----999-69999899929999899991889976-9998668999---98999999999389939
Q ss_pred EEEECCCCCCCCEECCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCCCCCCCEEE
Q ss_conf 99967999842100132011134666499995102799999999979992999989998278884687854666776049
Q 000685 240 ILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWC 319 (1352)
Q Consensus 240 rIWDl~sg~~~~~~~~~~~l~gH~~~V~sIafsp~~~dg~~LvSgs~Dg~I~IWDl~tg~~l~~l~~~~~l~~hs~~V~s 319 (1352)
++||++++.+... +.+|...|++++|+| ++.+|++++.|++|++||+++++.+..+. ...+...|.+
T Consensus 209 ~~wd~~~~~~~~~------~~~h~~~v~~v~~~p---~~~~l~s~s~d~~v~iwd~~~~~~~~~~~----~~~~~~~v~~ 275 (340)
T 1got_B 209 KLWDVREGMCRQT------FTGHESDINAICFFP---NGNAFATGSDDATCRLFDLRADQELMTYS----HDNIICGITS 275 (340)
T ss_dssp EEEETTTCSEEEE------ECCCSSCEEEEEECT---TSSEEEEEETTSCEEEEETTTTEEEEEEC----CTTCCSCEEE
T ss_pred EEEECCCCEEEEE------ECCCCCCEEEEEECC---CCCEEEEECCCCCEEEEECCCCCEEEEEC----CCCCCCCEEE
T ss_conf 9977899816789------748768779999949---99989997489819999889991899972----6885241699
Q ss_pred EEECCCCCEE-EEECCCE--EEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 8747999899-9830872--996457864556667435578889817705886368999990499919999978984999
Q 000685 320 HPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIIS 396 (1352)
Q Consensus 320 iafspdg~lL-S~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~~l~~h~~~~I~~Ia~sp~~~~lLatGs~DG~Ilr 396 (1352)
++|+|++.++ +++.|+. +||+.+.. ....+.+|.. .|++++|+| ++.++++|+.||.| +
T Consensus 276 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~---------------~~~~~~~h~~-~v~~~~~s~-dg~~l~s~s~D~~i-~ 337 (340)
T 1got_B 276 VSFSKSGRLLLAGYDDFNCNVWDALKAD---------------RAGVLAGHDN-RVSCLGVTD-DGMAVATGSWDSFL-K 337 (340)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCC---------------EEEEEECCSS-CEEEEEECT-TSSCEEEEETTSCE-E
T ss_pred EEECCCCCEEEEECCCCEEEEEECCCCC---------------EEEEEECCCC-CEEEEEECC-CCCEEEEECCCCCE-E
T ss_conf 9998999999997799909998841383---------------8658505778-488999829-99989997288618-9
Q ss_pred EEC
Q ss_conf 955
Q 000685 397 EFD 399 (1352)
Q Consensus 397 iWd 399 (1352)
+||
T Consensus 338 iWd 340 (340)
T 1got_B 338 IWN 340 (340)
T ss_dssp EEC
T ss_pred ECC
T ss_conf 559
Done!