BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000686
(1351 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IAR|A Chain A, The Crystal Structure Of Human Adenosine Deaminase
Length = 367
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 9/55 (16%)
Query: 340 FNGEWKPVDTEEAIKILENQSKSESYNTDDSYMRAEKGQGEYKGCSDEDVLLTKQ 394
G WKP DTE A+ L+N + S NTDD + +K D D +TK+
Sbjct: 265 LTGAWKP-DTEHAVIRLKNDQANYSLNTDDPLI--------FKSTLDTDYQMTKR 310
>pdb|4A18|E Chain E, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 1
pdb|4A1B|E Chain E, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 3.
pdb|4A1D|E Chain E, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 4.
pdb|4A19|E Chain E, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 2
Length = 191
Score = 30.4 bits (67), Expect = 6.8, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 158 KQELRELMKKSERKKRWAAISSVETIQESIKAAVKRVDEIKNQLA 202
K EL E KK E +++ A + + + AAVK+V+ +KN LA
Sbjct: 131 KAELTEEQKKKETERKNARKQDQQAVDTPLLAAVKKVEFLKNYLA 175
>pdb|2BGN|E Chain E, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|F Chain F, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|G Chain G, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|H Chain H, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
Length = 363
Score = 30.4 bits (67), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 340 FNGEWKPVDTEEAIKILENQSKSESYNTDDSYMRAEKGQGEYKGCSDEDVLLTKQ 394
G WKP DTE A+ +N + S NTDD + +K D D +TK+
Sbjct: 268 LTGAWKP-DTEHAVIRFKNDQVNYSLNTDDPLI--------FKSTLDTDYQMTKK 313
>pdb|1W1I|E Chain E, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|F Chain F, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|G Chain G, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|H Chain H, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
Length = 357
Score = 30.4 bits (67), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 340 FNGEWKPVDTEEAIKILENQSKSESYNTDDSYMRAEKGQGEYKGCSDEDVLLTKQ 394
G WKP DTE A+ +N + S NTDD + +K D D +TK+
Sbjct: 268 LTGAWKP-DTEHAVIRFKNDQVNYSLNTDDPLI--------FKSTLDTDYQMTKK 313
>pdb|1NDV|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
Fr117016
pdb|1NDW|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
Fr221647
pdb|1NDY|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
Fr230513
pdb|1NDZ|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
Fr235999
pdb|1O5R|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With A
Potent Inhibitor
pdb|1UML|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With A
Potent Inhibitor Fr233624
pdb|1V79|A Chain A, Crystal Structures Of Adenosine Deaminase Complexed With
Potent Inhibitors
pdb|1V7A|A Chain A, Crystal Structures Of Adenosine Deaminase Complexed With
Potent Inhibitors
pdb|1VFL|A Chain A, Adenosine Deaminase
pdb|1WXY|A Chain A, Crystal Structure Of Adenosine Deaminase Ligated With A
Potent Inhibitor
pdb|1WXZ|A Chain A, Crystal Structure Of Adenosine Deaminase Ligated With A
Potent Inhibitor
pdb|2E1W|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
Potent Inhibitors
pdb|2Z7G|A Chain A, Crystal Structure Of Adenosine Deaminase Ligated With Ehna
Length = 356
Score = 30.4 bits (67), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 340 FNGEWKPVDTEEAIKILENQSKSESYNTDDSYMRAEKGQGEYKGCSDEDVLLTKQ 394
G WKP DTE A+ +N + S NTDD + +K D D +TK+
Sbjct: 267 LTGAWKP-DTEHAVIRFKNDQVNYSLNTDDPLI--------FKSTLDTDYQMTKK 312
>pdb|1KRM|A Chain A, Crystal Structure Of Bovine Adenosine Deaminase Complexed
With 6-Hydroxyl-1,6-Dihydropurine Riboside
pdb|1QXL|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
Fr235380
Length = 356
Score = 30.0 bits (66), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 340 FNGEWKPVDTEEAIKILENQSKSESYNTDDSYMRAEKGQGEYKGCSDEDVLLTKQ 394
G WKP DTE A+ +N + S NTDD + +K D D +TK+
Sbjct: 267 LTGAWKP-DTEHAVIRFKNDQVNYSLNTDDPLI--------FKSTLDTDYQMTKK 312
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,427,201
Number of Sequences: 62578
Number of extensions: 1516176
Number of successful extensions: 3529
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3527
Number of HSP's gapped (non-prelim): 11
length of query: 1351
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1240
effective length of database: 8,027,179
effective search space: 9953701960
effective search space used: 9953701960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)