BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000686
(1351 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P15975|UBP53_MOUSE Inactive ubiquitin carboxyl-terminal hydrolase 53 OS=Mus musculus
GN=Usp53 PE=2 SV=2
Length = 1069
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/307 (24%), Positives = 117/307 (38%), Gaps = 44/307 (14%)
Query: 1008 GLGKEAANN--FLYMIIQSLWNLREFQEECKKKLDEVQKH--DGNPCIVCAFFDICAA-- 1061
GL E N FL +Q LW L F ++ L + H G+ CI CA I A
Sbjct: 31 GLLNEPGQNSCFLNSAVQVLWQLDIF----RRSLRALTGHICQGDACIFCALKTIFAQFQ 86
Query: 1062 KNRGEAVDPTELRIALSTYYCNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPED 1121
+R +A+ +R AL+ + ++ FQ G ++DA I +H F+ V + D D
Sbjct: 87 HSREKALPSDNIRHALAESFKDEQRFQLGLMDDAAECFENILARIH--FHLVPNRDA--D 142
Query: 1122 MYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRSGYQKCT----YLSFGISANNLRSL 1177
M C +C+ H+ F M ++E C +C S T Y+S N + +
Sbjct: 143 M------CTSKSCVTHQKFAMTLYEQCVCRSCGASSDPLPFTELVRYISTTALCNEVERM 196
Query: 1178 KNEHMDMSSKKVLELMGLG------EQMTCGCGQLNSIYHSLWRLPHVFVSVIDWQRGDE 1231
H + + EL+ + CGQ I L P + + W E
Sbjct: 197 MERHERVKPEMFAELLQAANTADDYRKCPSNCGQKIKIRRVLMNCPEIVTIGLVWD--SE 254
Query: 1232 SSEDISTTLSALSNELDLSKLFQGYL----PDYTYFVVSMVCFCKDRQHSVCF------- 1280
S+ + +L+ L L LF D +V M+C+ + F
Sbjct: 255 HSDLTEDVVRSLATHLYLPGLFYRVTDENATDSELHLVGMICYTSRHYCAFAFHTKSSKW 314
Query: 1281 -LYDDQH 1286
+DD H
Sbjct: 315 VFFDDAH 321
>sp|Q70EK8|UBP53_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase 53 OS=Homo sapiens
GN=USP53 PE=2 SV=2
Length = 1073
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/310 (24%), Positives = 122/310 (39%), Gaps = 35/310 (11%)
Query: 1008 GLGKEAANN--FLYMIIQSLWNLREFQEECKKKLDEVQKHDGNPCIVCAFFDICAA--KN 1063
GL E N FL +Q LW L F+ + V + G+ CI CA I A +
Sbjct: 31 GLLNEPGQNSCFLNSAVQVLWQLDIFRRSLRVLTGHVCQ--GDACIFCALKTIFAQFQHS 88
Query: 1064 RGEAVDPTELRIALSTYYCNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMY 1123
R +A+ +R AL+ + ++ FQ G ++DA + + +H F+ V S D DM
Sbjct: 89 REKALPSDNIRHALAESFKDEQRFQLGLMDDAAECFENMLERIH--FHIVPSRDA--DM- 143
Query: 1124 KDRLHCVDSNCLVHRIFGMDIFESIECINCHMRSGYQKCT----YLSFGISANNLRSLKN 1179
C +C+ H+ F M ++E C +C S T Y+S N + +
Sbjct: 144 -----CTSKSCITHQKFAMTLYEQCVCRSCGASSDPLPFTEFVRYISTTALCNEVERMLE 198
Query: 1180 EHMDMSSKKVLELMGLG------EQMTCGCGQLNSIYHSLWRLPHVFVSVIDWQRGDESS 1233
H + EL+ + CGQ I L P + + W E S
Sbjct: 199 RHERFKPEMFAELLQAANTTDDYRKCPSNCGQKIKIRRVLMNCPEIVTIGLVWD--SEHS 256
Query: 1234 EDISTTLSALSNELDLSKLFQGYLPDYT----YFVVSMVCFCKDRQHSVCFLYDDQHDEH 1289
+ + L+ L L LF + +V M+C+ QH F + + +
Sbjct: 257 DLTEAVVRNLATHLYLPGLFYRVTDENAKNSELNLVGMICYTS--QHYCAFAFHTKSSK- 313
Query: 1290 YVQHSDSNVE 1299
+V D+NV+
Sbjct: 314 WVFFDDANVK 323
>sp|Q8BL06|UBP54_MOUSE Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Mus musculus
GN=Usp54 PE=1 SV=2
Length = 1588
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 118/289 (40%), Gaps = 48/289 (16%)
Query: 1008 GLGKEAANN--FLYMIIQSLWNLREFQEECKKKLDEVQKHD--GNPCIVCAFFDI----- 1058
GL E N FL +Q LW+L F ++ ++ H G+ CI CA I
Sbjct: 32 GLSNEPGQNSCFLNSALQVLWHLDIF----RRSFRQLTTHKCMGDSCIFCALKGIFNQFQ 87
Query: 1059 CAAKNRGEAVDPTE-LRIALSTYYCNQNNFQEGQVNDAY-LFLLVIFKV-LHVAFYAVNS 1115
C++ E V P++ LR AL+ + ++ FQ G ++DA F ++ ++ H+A
Sbjct: 88 CSS----EKVLPSDTLRSALAKTFQDEQRFQLGIMDDAAECFENLLMRIHFHIA------ 137
Query: 1116 DDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRSG----YQKCTYLSFGISA 1171
D+ ED+ C +C+ H+ F M +FE C +C S Q Y+S
Sbjct: 138 DETKEDI------CTAQHCISHQKFAMTLFEQCVCSSCGATSDPLPFIQMVHYISTTALC 191
Query: 1172 NNLRSLKNEHMDMSSKKVLELM----GLGEQMTC--GCGQLNSIYHSLWRLPHVFVSVID 1225
N + + S EL+ +G+ C CG+ I L P + +
Sbjct: 192 NQAICMLEKREKPSPSMFGELLQNASTMGDLRNCPSNCGERIRIRRVLMNAPQIITIGLV 251
Query: 1226 WQRGDESSEDISTTLSALSNELDLSKLFQGYLPDYT----YFVVSMVCF 1270
W E S+ + +L L L LF D ++V M+C+
Sbjct: 252 WD--SEHSDLAEDVIHSLGTCLKLGDLFFRVTDDRAKQSELYLVGMICY 298
>sp|Q70EL1|UBP54_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Homo sapiens
GN=USP54 PE=1 SV=4
Length = 1684
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 121/291 (41%), Gaps = 52/291 (17%)
Query: 1008 GLGKEAANN--FLYMIIQSLWNLREFQEECKKKLDEVQKHD--GNPCIVCAFFDI----- 1058
GL E N FL +Q LW+L F ++ ++ H G+ CI CA I
Sbjct: 32 GLSNEPGQNSCFLNSALQVLWHLDIF----RRSFRQLTTHKCMGDSCIFCALKGIFNQFQ 87
Query: 1059 CAAKNRGEAVDPTE-LRIALSTYYCNQNNFQEGQVNDAY-LFLLVIFKV-LHVAFYAVNS 1115
C++ E V P++ LR AL+ + ++ FQ G ++DA F ++ ++ H+A
Sbjct: 88 CSS----EKVLPSDTLRSALAKTFQDEQRFQLGIMDDAAECFENLLMRIHFHIA------ 137
Query: 1116 DDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRSGYQKCTYLSFGISANNLR 1175
D+ ED+ C +C+ H+ F M +FE C +C S + IS +L
Sbjct: 138 DETKEDI------CTAQHCISHQKFAMTLFEQCVCTSCGATSDPLPFIQMVHYISTTSLC 191
Query: 1176 SLKNEHMDMSSKKVLELMG--------LGEQMTC--GCGQLNSIYHSLWRLPHVFVSVID 1225
+ ++ K + G +G+ C CG+ I L P + +
Sbjct: 192 NQAICMLERREKPSPSMFGELLQNASTMGDLRNCPSNCGERIRIRRVLMNAPQIITIGLV 251
Query: 1226 WQRGDES--SEDISTTLSALSNELDLSKLFQGYLPDYT----YFVVSMVCF 1270
W D S +ED+ + +L L L LF D ++V M+C+
Sbjct: 252 WD-SDHSDLAEDV---IHSLGTCLKLGDLFFRVTDDRAKQSELYLVGMICY 298
>sp|Q6IE24|UBP54_RAT Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Rattus
norvegicus GN=Usp54 PE=2 SV=2
Length = 1588
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/291 (25%), Positives = 121/291 (41%), Gaps = 52/291 (17%)
Query: 1008 GLGKEAANN--FLYMIIQSLWNLREFQEECKKKLDEVQKHD--GNPCIVCAFFDI----- 1058
GL E N FL +Q LW+L F ++ ++ H G+ CI CA I
Sbjct: 32 GLSNEPGQNSCFLNSALQVLWHLDIF----RRSFRQLTSHKCMGDSCIFCALKGIFKQFQ 87
Query: 1059 CAAKNRGEAVDPTE-LRIALSTYYCNQNNFQEGQVNDAY-LFLLVIFKV-LHVAFYAVNS 1115
C++ E V P++ LR AL+ + ++ FQ G ++DA F ++ ++ H+A
Sbjct: 88 CSS----EKVLPSDTLRSALAKTFQDEQRFQLGIMDDAAECFENLLMRIHFHIA------ 137
Query: 1116 DDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRSG----YQKCTYLSFGISA 1171
D+ ED+ C +C+ H+ F M +FE C +C S Q Y+S
Sbjct: 138 DETKEDI------CTAPHCISHQKFAMTLFEQCVCTSCGATSDPLPFIQMVHYISTTSLC 191
Query: 1172 NNLRSLKNEHMDMSSKKVLELM----GLGEQMTC--GCGQLNSIYHSLWRLPHVFVSVID 1225
N + + S EL+ +G+ C CG+ I L P + +
Sbjct: 192 NQAICMLEKREKPSPGMFGELLQNASTMGDLRDCPSNCGERIRIRRVLMNAPQIITIGLV 251
Query: 1226 WQRGDES--SEDISTTLSALSNELDLSKLFQGYLPDYT----YFVVSMVCF 1270
W D S +ED+ + +L L L LF D ++V M+C+
Sbjct: 252 WD-SDHSDLAEDV---IHSLGTCLKLGDLFFRVTDDRAKQSELYLVGMICY 298
>sp|Q6H236|PEG3_BOVIN Paternally-expressed gene 3 protein OS=Bos taurus GN=PEG3 PE=2 SV=1
Length = 2387
Score = 38.9 bits (89), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 808 IEQPLETGDTEQPSETGDMEQPSATRDIEQPSETGDIKQP---SLPQEKAVQIV--DDMQ 862
E+P +T TE+P++T ++P+ T E+P++T ++P S QE A + Q
Sbjct: 1394 TEEPAQTSYTEEPAQTSYTQEPAQTSYTEEPAQTSYTEEPAQTSYAQEPAQTSYAEEPAQ 1453
Query: 863 QLIATENAEKKSNEKEKSLEETDSKGQTRGKSKNKKNKNKKRKYQGEHADFCATGDIERP 922
A E A+ E+ T QT N + + Y E A T E P
Sbjct: 1454 TSYAEEPAQTSYAEEPAQTSYTQEPAQT-----NYTEEPAEASYTEEPAQ---TSYAEEP 1505
Query: 923 LETGDIEQPSGTGDIQQTSETGDIEQP---SLPQEKA 956
+T E+P+ T ++ ++T E+P S P+E A
Sbjct: 1506 AQTSYPEEPAQTSYAEEPAQTSYAEEPAQTSYPEEPA 1542
Score = 38.1 bits (87), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 6/149 (4%)
Query: 808 IEQPLETGDTEQPSETGDMEQPSATRDIEQPSETGDIKQP---SLPQEKA-VQIVDDMQQ 863
E+P +T TE+P++T ++P+ T E+P++T ++P S QE A ++ Q
Sbjct: 1277 TEEPAQTSCTEEPAQTSYTQEPAQTSCTEEPAQTSCTEEPAQTSYTQEPAQTSCTEEPAQ 1336
Query: 864 LIAT-ENAEKKSNEKEKSLEETDSKGQTRGKSKNKKNKNKKRKYQGEHADFCA-TGDIER 921
T E A+ E+ T+ QT + + + Q + A T E
Sbjct: 1337 TSYTQEPAQTSCTEEPAQTSYTEEPAQTSYTEEPAQTSYTQEPAQTSCTEEPAQTSYTEE 1396
Query: 922 PLETGDIEQPSGTGDIQQTSETGDIEQPS 950
P +T E+P+ T Q+ ++T E+P+
Sbjct: 1397 PAQTSYTEEPAQTSYTQEPAQTSYTEEPA 1425
Score = 37.7 bits (86), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 799 AKDFGVTRDIEQPLETGDTEQPSETGDMEQPSATRDIEQPSETGDIKQP---SLPQEKAV 855
A++ T E+P +T T++P++T E+P+ E+P++T ++P S P+E A
Sbjct: 1457 AEEPAQTSYAEEPAQTSYTQEPAQTNYTEEPAEASYTEEPAQTSYAEEPAQTSYPEEPA- 1515
Query: 856 QIVDDMQQLIATENAEKKSNEKEKSLEETDSKGQTRGKSKNKKNKNKKRKYQGEHADFCA 915
Q A E A+ E+ + QT + + K Q + + A
Sbjct: 1516 ------QTSYAEEPAQTSYAEEPAQTSYPEEPAQTSYTEEPAQTSYAKEPAQTSYPEEPA 1569
Query: 916 -TGDIERPLETGDIEQPSGTGDIQQTSETGDIEQPS 950
T E P +T E+P+ T ++ ++T E+P+
Sbjct: 1570 QTSYAEEPAQTSYAEEPAQTSYAEEPAQTSYSEEPA 1605
Score = 35.4 bits (80), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 13/148 (8%)
Query: 808 IEQPLETGDTEQPSETGDMEQPSATRDIEQPSETGDIKQP---SLPQEKAVQ--IVDDMQ 862
++P +T TE+P++T E+P+ T ++P++T K+P S +E A I + Q
Sbjct: 1142 TQEPAQTSCTEEPAQTSCTEEPAQTSYTQEPAQTSYTKEPAEASYTEEPAQTSCIEEPAQ 1201
Query: 863 QLIATENAEKKSNEKEKSLEETDSKGQTRGKSKNKKNKNKKRKYQGEHADFCATGDIERP 922
E+A+ E+ TD +T + + + Y E A+ T E P
Sbjct: 1202 TNYTKESAKASYTEEPAQTSYTDPAAET-----SYTEEPAQTNYTVESAEASYT---EEP 1253
Query: 923 LETGDIEQPSGTGDIQQTSETGDIEQPS 950
+T IE+P+ T ++T E+P+
Sbjct: 1254 SQTSCIEEPAQTSYTDSAADTSCTEEPA 1281
Score = 35.0 bits (79), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 58/143 (40%), Gaps = 12/143 (8%)
Query: 808 IEQPLETGDTEQPSETGDMEQPSATRDIEQPSETGDIKQPSLPQEKAVQIVDDMQQLIAT 867
E+P +T TE P+E E+P+ T IE+P++T P + + Q
Sbjct: 980 AEEPAQTSYTEAPAEASYTEEPAQTSCIEEPAQTSYTN----PAAETSYAEEPAQTSYTE 1035
Query: 868 ENAEKKSNEKEKSLEETDSKGQTRGKSKNKKNKNKKRKYQGEHADFCATGDIERPLETGD 927
AE E+ + QT + N + Y E A T E P E
Sbjct: 1036 APAEASYTEEPAQTSCIEEPAQT-----SYTNPAAETSYTEEPAQ---TSYTEAPAEASG 1087
Query: 928 IEQPSGTGDIQQTSETGDIEQPS 950
IE+P+ T ++++E E+PS
Sbjct: 1088 IEEPAQTNYTEESAEVSYTEEPS 1110
>sp|Q8SX83|SPEN_DROME Protein split ends OS=Drosophila melanogaster GN=spen PE=1 SV=2
Length = 5560
Score = 37.0 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 4/139 (2%)
Query: 765 QKGLEEPDNKGQTQGKSKNKKNKNKNKKRKDQREAKDFGVTRDIEQPLETGDTEQPSETG 824
+K + E D + + Q + + N+ K + KD RE K+ E+ L ++ E
Sbjct: 2002 EKEIREKDLREKEQ---RERDNREKELRDKDLRE-KEMREKEQREKELHREKDQREREHR 2057
Query: 825 DMEQPSATRDIEQPSETGDIKQPSLPQEKAVQIVDDMQQLIATENAEKKSNEKEKSLEET 884
+ EQ D+EQ G +++ S Q+ + I + L A + K N + + T
Sbjct: 2058 EKEQSRRAMDVEQEGRGGRMRELSSYQKSKMDIAGEASSLTAIDCQHNKENAMDTIAQGT 2117
Query: 885 DSKGQTRGKSKNKKNKNKK 903
+ K +++K
Sbjct: 2118 PGASPSTPSDNTPKERSRK 2136
>sp|C5DX05|EIS1_ZYGRC Eisosome protein 1 OS=Zygosaccharomyces rouxii (strain ATCC 2623 /
CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) GN=EIS1
PE=3 SV=1
Length = 848
Score = 34.7 bits (78), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 87/212 (41%), Gaps = 57/212 (26%)
Query: 569 RGQRVKLFESFKMERSKFVKMYEERRKLSKKWDALEAVNGIFADEKKRRDENPEYVWRTF 628
+GQ K E + E+ + V+ YEER LE VN R
Sbjct: 523 KGQHAKELEEAREEQRRLVQPYEER---------LEEVN------------------REH 555
Query: 629 ESLLRERLKELEE--RIDAAAAAYQFEL-----------------EFILNVLETDRAVAA 669
ESL++ER EE R+ + +Q+++ E L LETDR
Sbjct: 556 ESLVQERTAINEEIARLHESIKEHQYQISKYEREIKSHEEQNASAEEELKKLETDR--EG 613
Query: 670 FQFENTSRVHENWNQSDEYVGEKILSWTNQLGNDIWLENVRIITSIVSMKLFNLQLGEIS 729
Q V N N++ E + +LS + L+N++ + +I++ + L E
Sbjct: 614 IQSHYNDNVVVNANKAKE---QALLS-----SEEARLQNLK-VDAIINERKTELNRTEQE 664
Query: 730 AYEYQLILLPMFRSLVKSRLERHIDEEAVKKL 761
+L +L R ++R + +IDEE VK+L
Sbjct: 665 LQREKLNMLEAMRKTAEARGDENIDEERVKQL 696
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 504,524,383
Number of Sequences: 539616
Number of extensions: 22239515
Number of successful extensions: 105027
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 1492
Number of HSP's that attempted gapping in prelim test: 94126
Number of HSP's gapped (non-prelim): 9308
length of query: 1351
length of database: 191,569,459
effective HSP length: 130
effective length of query: 1221
effective length of database: 121,419,379
effective search space: 148253061759
effective search space used: 148253061759
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 68 (30.8 bits)