Query 000686
Match_columns 1351
No_of_seqs 210 out of 1166
Neff 5.2
Searched_HMMs 46136
Date Mon Apr 1 21:49:21 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000686.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000686hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04780 DUF629: Protein of un 100.0 1E-128 2E-133 1127.4 35.6 428 237-704 1-466 (466)
2 KOG1887 Ubiquitin carboxyl-ter 100.0 1.6E-93 3.6E-98 856.1 16.4 742 410-1325 1-789 (806)
3 KOG1865 Ubiquitin carboxyl-ter 100.0 2.5E-49 5.3E-54 462.5 23.2 293 1000-1333 102-410 (545)
4 cd02660 Peptidase_C19D A subfa 100.0 2.2E-43 4.7E-48 403.1 29.8 296 1007-1331 1-328 (328)
5 cd02661 Peptidase_C19E A subfa 100.0 1.7E-43 3.8E-48 397.1 28.5 288 1006-1331 1-304 (304)
6 cd02657 Peptidase_C19A A subfa 100.0 1.9E-43 4E-48 400.1 28.8 286 1008-1331 1-305 (305)
7 cd02663 Peptidase_C19G A subfa 100.0 1E-43 2.2E-48 403.2 25.4 280 1008-1331 1-300 (300)
8 cd02668 Peptidase_C19L A subfa 100.0 2.9E-43 6.4E-48 403.5 27.7 288 1008-1331 1-324 (324)
9 cd02669 Peptidase_C19M A subfa 100.0 6.2E-43 1.3E-47 416.9 28.8 288 1005-1331 118-440 (440)
10 cd02658 Peptidase_C19B A subfa 100.0 6.8E-43 1.5E-47 396.9 27.3 280 1008-1331 1-311 (311)
11 cd02664 Peptidase_C19H A subfa 100.0 1.6E-42 3.4E-47 398.5 25.6 269 1008-1331 1-327 (327)
12 cd02671 Peptidase_C19O A subfa 100.0 8.8E-42 1.9E-46 393.6 26.0 280 1004-1331 22-332 (332)
13 cd02667 Peptidase_C19K A subfa 100.0 2.1E-41 4.6E-46 380.8 24.3 240 1008-1331 1-279 (279)
14 cd02659 peptidase_C19C A subfa 100.0 6.9E-41 1.5E-45 383.4 27.4 296 1005-1334 1-333 (334)
15 COG5560 UBP12 Ubiquitin C-term 100.0 1.6E-41 3.4E-46 395.8 13.2 315 1000-1333 259-822 (823)
16 COG5533 UBP5 Ubiquitin C-termi 100.0 3.2E-38 6.8E-43 345.1 17.8 303 1003-1333 68-414 (415)
17 cd02662 Peptidase_C19F A subfa 100.0 1.1E-36 2.3E-41 336.1 21.2 213 1008-1331 1-240 (240)
18 PF00443 UCH: Ubiquitin carbox 100.0 1.7E-35 3.6E-40 321.2 24.3 250 1006-1330 1-269 (269)
19 KOG1868 Ubiquitin C-terminal h 100.0 9.9E-35 2.1E-39 353.4 13.1 309 1004-1337 299-650 (653)
20 cd02674 Peptidase_C19R A subfa 100.0 3.1E-33 6.8E-38 303.3 19.2 214 1008-1331 1-230 (230)
21 cd02666 Peptidase_C19J A subfa 100.0 2.1E-33 4.6E-38 325.0 18.4 283 1006-1331 1-343 (343)
22 KOG1867 Ubiquitin-specific pro 100.0 1E-32 2.2E-37 330.4 17.9 306 1002-1334 157-485 (492)
23 cd02673 Peptidase_C19Q A subfa 100.0 9.8E-32 2.1E-36 298.4 19.3 211 1085-1331 26-245 (245)
24 KOG1866 Ubiquitin carboxyl-ter 100.0 2.2E-32 4.8E-37 323.5 5.6 309 1003-1340 92-441 (944)
25 cd02665 Peptidase_C19I A subfa 100.0 1.3E-30 2.7E-35 286.3 17.9 221 1008-1331 1-228 (228)
26 cd02257 Peptidase_C19 Peptidas 100.0 5.7E-30 1.2E-34 273.0 21.1 234 1008-1331 1-255 (255)
27 COG5077 Ubiquitin carboxyl-ter 100.0 2.4E-30 5.2E-35 306.1 8.5 301 1002-1335 189-513 (1089)
28 cd02672 Peptidase_C19P A subfa 100.0 9.9E-29 2.2E-33 277.8 14.4 228 1005-1331 14-268 (268)
29 KOG0944 Ubiquitin-specific pro 100.0 1.3E-27 2.8E-32 282.5 18.3 202 1002-1229 303-523 (763)
30 KOG1870 Ubiquitin C-terminal h 99.9 9.7E-27 2.1E-31 295.6 12.3 316 999-1333 239-841 (842)
31 COG5207 UBP14 Isopeptidase T [ 99.9 1.6E-25 3.5E-30 256.9 16.4 218 983-1228 266-510 (749)
32 KOG1863 Ubiquitin carboxyl-ter 99.9 8.4E-26 1.8E-30 293.4 13.6 299 1001-1334 165-486 (1093)
33 KOG1873 Ubiquitin-specific pro 99.9 5.4E-26 1.2E-30 270.8 9.8 149 1005-1157 204-387 (877)
34 PF04781 DUF627: Protein of un 99.9 3.2E-25 6.8E-30 216.2 10.9 104 23-135 1-110 (111)
35 PF13423 UCH_1: Ubiquitin carb 99.9 1.2E-23 2.6E-28 238.9 21.7 274 1007-1298 1-295 (295)
36 KOG4598 Putative ubiquitin-spe 99.9 7.8E-25 1.7E-29 256.7 8.1 281 1003-1339 84-447 (1203)
37 KOG1864 Ubiquitin-specific pro 99.9 3.4E-22 7.3E-27 243.7 13.3 295 1002-1311 228-560 (587)
38 cd02670 Peptidase_C19N A subfa 99.9 2.5E-21 5.5E-26 214.6 15.2 181 1091-1331 22-241 (241)
39 KOG1872 Ubiquitin-specific pro 99.8 1.6E-21 3.5E-26 226.0 9.7 301 1001-1332 100-468 (473)
40 KOG1871 Ubiquitin-specific pro 99.8 7.6E-19 1.6E-23 199.6 12.0 310 1001-1333 23-419 (420)
41 KOG2026 Spindle pole body prot 99.8 6.2E-18 1.3E-22 191.3 15.7 273 1005-1303 133-425 (442)
42 KOG1275 PAB-dependent poly(A) 99.4 5.5E-12 1.2E-16 154.5 15.1 307 1005-1333 498-863 (1118)
43 PF15499 Peptidase_C98: Ubiqui 98.3 3.1E-06 6.7E-11 93.9 9.5 235 1010-1298 6-253 (275)
44 PRK15359 type III secretion sy 96.8 0.01 2.2E-07 61.5 11.2 100 22-139 28-127 (144)
45 PLN03088 SGT1, suppressor of 96.8 0.0076 1.6E-07 71.6 11.6 99 22-138 6-104 (356)
46 TIGR02552 LcrH_SycD type III s 96.7 0.027 5.8E-07 56.3 13.2 102 14-132 13-114 (135)
47 PRK10370 formate-dependent nit 95.8 0.062 1.3E-06 58.9 11.0 112 14-139 69-180 (198)
48 PRK11189 lipoprotein NlpI; Pro 95.3 0.09 1.9E-06 60.8 10.3 101 21-139 67-167 (296)
49 PRK12370 invasion protein regu 95.1 0.092 2E-06 66.0 10.3 89 32-138 318-406 (553)
50 PF13894 zf-C2H2_4: C2H2-type 94.9 0.021 4.5E-07 40.6 2.4 24 292-315 1-24 (24)
51 cd00189 TPR Tetratricopeptide 94.6 0.48 1E-05 41.2 10.9 93 23-132 5-97 (100)
52 PF00096 zf-C2H2: Zinc finger, 94.3 0.031 6.7E-07 40.2 2.1 23 292-315 1-23 (23)
53 COG4783 Putative Zn-dependent 94.3 0.17 3.8E-06 61.6 9.5 102 22-141 310-411 (484)
54 KOG1887 Ubiquitin carboxyl-ter 93.4 0.068 1.5E-06 68.1 4.3 213 650-914 27-251 (806)
55 PF13432 TPR_16: Tetratricopep 93.3 0.13 2.7E-06 45.5 4.6 64 23-99 2-65 (65)
56 PRK12370 invasion protein regu 93.3 0.33 7.2E-06 61.1 10.0 110 15-141 335-444 (553)
57 PF13371 TPR_9: Tetratricopept 93.1 0.3 6.5E-06 43.9 6.8 69 27-108 4-72 (73)
58 COG3063 PilF Tfp pilus assembl 93.1 0.48 1E-05 53.4 9.6 109 7-132 20-132 (250)
59 TIGR02795 tol_pal_ybgF tol-pal 92.8 1 2.3E-05 43.2 10.6 97 19-132 3-105 (119)
60 TIGR02521 type_IV_pilW type IV 92.6 0.93 2E-05 47.6 10.9 98 18-132 31-128 (234)
61 TIGR00990 3a0801s09 mitochondr 92.5 0.61 1.3E-05 59.2 10.9 113 15-133 362-497 (615)
62 TIGR00990 3a0801s09 mitochondr 92.4 0.64 1.4E-05 59.1 10.9 112 15-132 328-462 (615)
63 PRK10803 tol-pal system protei 92.4 1 2.2E-05 51.9 11.4 97 17-130 141-244 (263)
64 TIGR03302 OM_YfiO outer membra 91.9 1.4 3.1E-05 48.4 11.6 112 7-132 23-144 (235)
65 KOG1864 Ubiquitin-specific pro 91.8 0.25 5.4E-06 62.5 6.2 103 1009-1111 34-153 (587)
66 PRK09782 bacteriophage N4 rece 91.4 1.6 3.5E-05 58.8 13.4 121 24-169 615-735 (987)
67 PRK15174 Vi polysaccharide exp 91.2 0.95 2.1E-05 58.3 10.7 100 25-138 219-318 (656)
68 PF13525 YfiO: Outer membrane 90.9 2 4.4E-05 47.1 11.4 115 14-130 38-168 (203)
69 PF08715 Viral_protease: Papai 89.9 2.6 5.5E-05 50.0 11.6 68 1014-1107 110-178 (320)
70 TIGR03302 OM_YfiO outer membra 89.3 4.1 9E-05 44.8 12.3 110 20-139 72-201 (235)
71 PRK10866 outer membrane biogen 89.2 4.2 9.1E-05 46.2 12.5 76 21-113 35-113 (243)
72 PRK15174 Vi polysaccharide exp 89.1 2.8 6.1E-05 54.1 12.3 99 17-132 245-347 (656)
73 PRK15179 Vi polysaccharide bio 88.1 2.3 5E-05 55.3 10.5 100 34-138 68-188 (694)
74 KOG0553 TPR repeat-containing 87.8 0.8 1.7E-05 53.3 5.5 68 61-132 76-144 (304)
75 TIGR02917 PEP_TPR_lipo putativ 86.7 3 6.6E-05 53.2 10.5 93 23-132 164-256 (899)
76 TIGR02521 type_IV_pilW type IV 86.6 4.8 0.0001 42.2 10.3 112 17-132 64-198 (234)
77 PF12895 Apc3: Anaphase-promot 85.9 3.3 7.2E-05 38.6 7.8 81 31-129 2-84 (84)
78 PF13371 TPR_9: Tetratricopept 85.9 1.7 3.7E-05 39.0 5.5 53 82-139 12-64 (73)
79 PF09295 ChAPs: ChAPs (Chs5p-A 85.6 2.1 4.6E-05 52.1 7.8 82 28-126 210-291 (395)
80 PF13414 TPR_11: TPR repeat; P 85.4 1.7 3.8E-05 38.5 5.3 66 51-132 2-67 (69)
81 PRK15359 type III secretion sy 84.6 4.4 9.5E-05 42.1 8.7 88 13-113 53-140 (144)
82 PRK10049 pgaA outer membrane p 84.5 4.3 9.3E-05 53.4 10.5 100 22-140 53-152 (765)
83 TIGR02917 PEP_TPR_lipo putativ 84.5 4.6 9.9E-05 51.6 10.6 105 22-132 740-866 (899)
84 PF13414 TPR_11: TPR repeat; P 84.4 2 4.3E-05 38.2 5.2 64 21-96 6-69 (69)
85 cd05804 StaR_like StaR_like; a 84.3 6.8 0.00015 45.6 11.0 107 21-132 46-177 (355)
86 PRK15179 Vi polysaccharide bio 84.2 4.7 0.0001 52.6 10.4 104 13-133 115-218 (694)
87 PF13432 TPR_16: Tetratricopep 83.9 2 4.3E-05 37.9 5.0 53 81-138 13-65 (65)
88 PRK02603 photosystem I assembl 83.8 5.1 0.00011 42.5 8.9 88 14-114 31-121 (172)
89 PRK09782 bacteriophage N4 rece 83.8 4.6 9.9E-05 54.6 10.4 53 82-139 626-678 (987)
90 PF13429 TPR_15: Tetratricopep 83.0 1.9 4.1E-05 49.0 5.7 100 22-139 150-249 (280)
91 PLN03088 SGT1, suppressor of 82.8 5.2 0.00011 47.9 9.4 86 15-113 33-118 (356)
92 PF14559 TPR_19: Tetratricopep 82.2 2.5 5.3E-05 37.4 4.9 67 29-108 2-68 (68)
93 PF12874 zf-met: Zinc-finger o 82.1 0.99 2.2E-05 33.0 1.9 22 292-313 1-22 (25)
94 PLN02789 farnesyltranstransfer 82.1 11 0.00024 44.7 11.7 114 5-132 19-137 (320)
95 PRK10049 pgaA outer membrane p 82.1 5.4 0.00012 52.4 10.0 114 8-143 8-121 (765)
96 COG5010 TadD Flp pilus assembl 81.4 8.4 0.00018 44.3 9.8 100 14-130 96-195 (257)
97 PRK11447 cellulose synthase su 80.9 11 0.00025 51.8 12.8 116 19-139 386-530 (1157)
98 PRK11906 transcriptional regul 80.1 18 0.0004 44.8 12.7 144 19-179 256-406 (458)
99 TIGR02552 LcrH_SycD type III s 79.9 6.9 0.00015 39.0 7.8 82 40-139 5-86 (135)
100 PRK10370 formate-dependent nit 79.2 6.6 0.00014 43.2 8.0 91 32-138 53-144 (198)
101 PF13512 TPR_18: Tetratricopep 78.6 11 0.00025 39.8 9.1 81 18-100 47-134 (142)
102 cd05804 StaR_like StaR_like; a 78.4 13 0.00028 43.3 10.6 104 12-132 108-215 (355)
103 TIGR00540 hemY_coli hemY prote 78.4 15 0.00033 44.6 11.5 102 20-139 86-188 (409)
104 PRK11906 transcriptional regul 78.3 12 0.00025 46.5 10.3 103 13-132 290-401 (458)
105 PF05605 zf-Di19: Drought indu 76.3 2 4.4E-05 37.7 2.4 25 293-318 4-28 (54)
106 PRK10747 putative protoheme IX 76.2 11 0.00024 45.6 9.5 102 17-139 262-363 (398)
107 COG4049 Uncharacterized protei 76.1 1.4 3E-05 39.3 1.3 30 290-319 16-45 (65)
108 PF12688 TPR_5: Tetratrico pep 75.5 39 0.00085 34.7 11.7 93 24-131 7-103 (120)
109 PRK10866 outer membrane biogen 75.3 23 0.00051 40.3 11.2 84 14-99 65-158 (243)
110 PRK15363 pathogenicity island 75.0 18 0.00038 39.1 9.4 94 20-126 37-133 (157)
111 PHA00616 hypothetical protein 74.9 1.5 3.2E-05 37.5 1.1 25 293-317 3-27 (44)
112 PRK11788 tetratricopeptide rep 74.7 12 0.00026 44.1 9.1 94 22-132 184-278 (389)
113 PF14559 TPR_19: Tetratricopep 74.6 6.7 0.00015 34.6 5.4 48 81-132 7-54 (68)
114 PF13525 YfiO: Outer membrane 74.4 68 0.0015 35.3 14.2 70 22-101 9-78 (203)
115 PF13512 TPR_18: Tetratricopep 74.0 31 0.00067 36.6 10.8 79 8-102 3-84 (142)
116 PF13429 TPR_15: Tetratricopep 73.8 6.1 0.00013 44.9 6.1 89 25-130 187-275 (280)
117 PRK11189 lipoprotein NlpI; Pro 73.7 21 0.00045 41.5 10.5 100 15-132 95-194 (296)
118 PRK11447 cellulose synthase su 73.1 16 0.00034 50.5 10.7 123 23-167 578-700 (1157)
119 PF12756 zf-C2H2_2: C2H2 type 73.0 2.7 5.7E-05 39.9 2.5 25 291-315 50-74 (100)
120 COG4235 Cytochrome c biogenesi 72.6 26 0.00056 41.2 10.7 100 28-141 166-265 (287)
121 PF04959 ARS2: Arsenite-resist 72.6 2 4.3E-05 48.2 1.7 33 286-319 73-105 (214)
122 smart00355 ZnF_C2H2 zinc finge 72.0 3 6.5E-05 29.6 2.1 23 293-316 2-24 (26)
123 PLN02789 farnesyltranstransfer 71.3 20 0.00044 42.6 9.8 102 16-132 69-171 (320)
124 PRK11788 tetratricopeptide rep 70.7 31 0.00068 40.6 11.3 106 23-132 112-243 (389)
125 PF12171 zf-C2H2_jaz: Zinc-fin 69.0 2.2 4.8E-05 32.2 0.8 22 292-313 2-23 (27)
126 PF09976 TPR_21: Tetratricopep 68.2 35 0.00076 35.2 9.7 89 23-128 16-110 (145)
127 PF13912 zf-C2H2_6: C2H2-type 68.0 3.5 7.5E-05 30.7 1.7 21 293-313 3-23 (27)
128 TIGR00540 hemY_coli hemY prote 67.0 32 0.00069 41.8 10.6 103 13-132 113-216 (409)
129 CHL00033 ycf3 photosystem I as 66.6 33 0.00072 36.1 9.4 97 22-131 39-141 (168)
130 PRK10153 DNA-binding transcrip 65.5 36 0.00079 43.1 10.9 110 22-139 343-488 (517)
131 CHL00033 ycf3 photosystem I as 65.4 32 0.0007 36.2 9.0 80 18-99 72-154 (168)
132 TIGR02795 tol_pal_ybgF tol-pal 65.3 28 0.00061 33.2 7.9 70 18-100 39-111 (119)
133 COG4105 ComL DNA uptake lipopr 64.7 35 0.00076 39.5 9.5 83 12-99 65-150 (254)
134 KOG4162 Predicted calmodulin-b 64.1 67 0.0015 42.1 12.6 116 17-138 392-513 (799)
135 PRK10747 putative protoheme IX 63.4 32 0.0007 41.7 9.6 93 22-132 298-390 (398)
136 PLN03098 LPA1 LOW PSII ACCUMUL 63.4 17 0.00036 45.1 7.1 70 46-132 69-141 (453)
137 KOG1125 TPR repeat-containing 63.2 12 0.00026 47.2 5.8 100 17-133 427-528 (579)
138 PF13913 zf-C2HC_2: zinc-finge 63.1 5.1 0.00011 30.2 1.7 19 293-312 4-22 (25)
139 PF14863 Alkyl_sulf_dimr: Alky 61.8 25 0.00055 37.2 7.2 67 19-87 71-137 (141)
140 KOG1126 DNA-binding cell divis 61.6 18 0.00038 46.3 7.0 105 30-139 433-558 (638)
141 KOG2076 RNA polymerase III tra 61.3 84 0.0018 41.9 12.9 123 24-169 420-543 (895)
142 KOG2076 RNA polymerase III tra 61.2 77 0.0017 42.2 12.5 110 18-131 139-269 (895)
143 PF03704 BTAD: Bacterial trans 60.6 1.3E+02 0.0028 30.7 12.2 112 19-132 7-132 (146)
144 PRK02603 photosystem I assembl 60.2 28 0.0006 36.9 7.4 81 20-102 74-157 (172)
145 PF13174 TPR_6: Tetratricopept 59.9 9.5 0.00021 28.7 2.8 29 23-51 5-33 (33)
146 PHA02768 hypothetical protein; 58.3 6.1 0.00013 35.4 1.7 23 293-316 7-29 (55)
147 PF13431 TPR_17: Tetratricopep 57.9 8.8 0.00019 30.6 2.4 33 87-123 1-33 (34)
148 KOG2610 Uncharacterized conser 57.2 24 0.00051 42.2 6.6 102 25-140 110-211 (491)
149 KOG1173 Anaphase-promoting com 55.2 1.2E+02 0.0026 38.8 12.3 106 27-140 287-416 (611)
150 KOG0624 dsRNA-activated protei 54.3 25 0.00054 42.2 6.1 101 14-131 34-134 (504)
151 PF13281 DUF4071: Domain of un 54.1 3.1E+02 0.0068 33.7 15.5 87 23-114 184-274 (374)
152 KOG3060 Uncharacterized conser 54.0 1.5E+02 0.0032 34.8 11.9 112 23-141 57-191 (289)
153 KOG0553 TPR repeat-containing 53.8 62 0.0014 38.3 9.2 88 28-132 91-178 (304)
154 COG4105 ComL DNA uptake lipopr 53.5 52 0.0011 38.1 8.4 70 23-103 39-109 (254)
155 PLN03098 LPA1 LOW PSII ACCUMUL 53.3 78 0.0017 39.5 10.3 70 13-95 70-142 (453)
156 PRK14574 hmsH outer membrane p 51.3 77 0.0017 42.6 10.7 107 11-138 27-136 (822)
157 PF04733 Coatomer_E: Coatomer 51.3 64 0.0014 37.8 9.0 94 24-132 137-230 (290)
158 PF06552 TOM20_plant: Plant sp 50.9 40 0.00088 37.2 6.7 76 22-99 32-114 (186)
159 COG1729 Uncharacterized protei 49.9 1.2E+02 0.0027 35.3 10.7 95 19-126 142-245 (262)
160 KOG2002 TPR-containing nuclear 49.4 1.5E+02 0.0033 40.0 12.4 76 59-139 666-751 (1018)
161 PF09237 GAGA: GAGA factor; I 49.3 14 0.0003 32.8 2.3 26 292-317 25-50 (54)
162 PF13945 NST1: Salt tolerance 48.0 8.4 0.00018 42.6 1.1 31 232-263 100-130 (190)
163 PF12756 zf-C2H2_2: C2H2 type 47.7 6.4 0.00014 37.3 0.1 27 294-320 2-28 (100)
164 KOG0548 Molecular co-chaperone 45.9 1.2E+02 0.0026 38.5 10.4 93 23-132 363-455 (539)
165 PHA00733 hypothetical protein 45.3 14 0.00031 38.2 2.3 25 292-316 100-124 (128)
166 PF13428 TPR_14: Tetratricopep 43.1 34 0.00073 28.3 3.7 38 23-60 6-43 (44)
167 PRK10153 DNA-binding transcrip 43.1 2E+02 0.0043 36.7 12.1 76 54-133 356-450 (517)
168 PF05408 Peptidase_C28: Foot-a 41.9 15 0.00033 40.3 1.9 32 1274-1308 138-170 (193)
169 KOG1156 N-terminal acetyltrans 41.6 1.2E+02 0.0027 39.1 9.7 132 20-179 9-140 (700)
170 smart00451 ZnF_U1 U1-like zinc 41.3 20 0.00044 28.1 2.1 22 293-314 5-26 (35)
171 cd00189 TPR Tetratricopeptide 40.8 90 0.002 26.7 6.4 47 82-132 17-63 (100)
172 KOG0543 FKBP-type peptidyl-pro 40.4 2.1E+02 0.0045 35.3 11.0 121 27-169 217-339 (397)
173 KOG0548 Molecular co-chaperone 40.0 86 0.0019 39.6 8.0 81 14-107 388-468 (539)
174 COG5010 TadD Flp pilus assembl 39.8 1.2E+02 0.0026 35.3 8.6 73 28-113 76-148 (257)
175 KOG0547 Translocase of outer m 39.4 3.8E+02 0.0083 34.1 13.0 107 19-132 277-423 (606)
176 PF05408 Peptidase_C28: Foot-a 38.5 57 0.0012 36.0 5.5 20 1006-1025 33-52 (193)
177 KOG4162 Predicted calmodulin-b 35.6 1.5E+02 0.0032 39.2 9.2 80 23-115 655-734 (799)
178 COG4783 Putative Zn-dependent 35.5 1.8E+02 0.0039 36.6 9.6 92 28-132 350-454 (484)
179 KOG2053 Mitochondrial inherita 35.1 1.6E+02 0.0035 39.4 9.6 96 20-132 11-106 (932)
180 KOG2002 TPR-containing nuclear 32.7 2.6E+02 0.0056 38.0 10.8 109 16-140 162-272 (1018)
181 KOG4648 Uncharacterized conser 32.4 47 0.001 39.9 3.9 54 75-132 107-160 (536)
182 PF12907 zf-met2: Zinc-binding 32.1 20 0.00043 30.3 0.7 26 293-318 3-31 (40)
183 PF05605 zf-Di19: Drought indu 31.7 26 0.00055 30.8 1.3 22 292-315 32-53 (54)
184 COG4235 Cytochrome c biogenesi 31.6 2.5E+02 0.0054 33.3 9.6 69 33-114 137-205 (287)
185 PF09295 ChAPs: ChAPs (Chs5p-A 30.9 3E+02 0.0065 34.1 10.6 87 26-132 176-263 (395)
186 PHA00732 hypothetical protein 30.8 34 0.00073 32.8 2.1 24 293-316 3-26 (79)
187 KOG0547 Translocase of outer m 30.3 2.5E+02 0.0054 35.7 9.5 111 15-132 357-491 (606)
188 PF12569 NARP1: NMDA receptor- 30.1 1.5E+02 0.0032 37.8 8.1 90 20-126 196-285 (517)
189 COG1592 Rubrerythrin [Energy p 30.0 37 0.0008 37.0 2.4 29 272-303 118-146 (166)
190 KOG1155 Anaphase-promoting com 29.8 2E+02 0.0044 36.1 8.7 57 30-99 342-398 (559)
191 PF14353 CpXC: CpXC protein 27.9 40 0.00086 34.5 2.2 14 1147-1160 1-14 (128)
192 PF01927 Mut7-C: Mut7-C RNAse 26.9 30 0.00065 36.5 1.1 12 290-301 123-134 (147)
193 PF13424 TPR_12: Tetratricopep 26.1 79 0.0017 28.7 3.6 48 84-132 24-75 (78)
194 PF14853 Fis1_TPR_C: Fis1 C-te 25.5 1.5E+02 0.0032 26.4 5.0 28 102-133 4-31 (53)
195 PF14853 Fis1_TPR_C: Fis1 C-te 25.4 1.8E+02 0.0038 26.0 5.4 44 24-67 7-50 (53)
196 KOG4340 Uncharacterized conser 25.3 3.1E+02 0.0067 32.9 8.7 82 28-126 20-101 (459)
197 PF15297 CKAP2_C: Cytoskeleton 25.0 19 0.00042 43.2 -0.8 51 238-295 81-146 (353)
198 KOG0551 Hsp90 co-chaperone CNS 24.8 4.4E+02 0.0095 32.2 9.9 68 82-172 136-203 (390)
199 PF08631 SPO22: Meiosis protei 23.6 3.9E+02 0.0085 30.9 9.5 137 28-168 3-151 (278)
200 PF09538 FYDLN_acid: Protein o 23.5 31 0.00067 35.0 0.4 14 292-305 10-23 (108)
201 PF09090 MIF4G_like_2: MIF4G l 23.4 7.2 0.00016 44.6 -4.6 74 471-553 56-138 (253)
202 COG2956 Predicted N-acetylgluc 23.0 3.5E+02 0.0076 32.8 8.7 86 33-130 156-241 (389)
203 PRK14574 hmsH outer membrane p 23.0 5.4E+02 0.012 34.9 11.6 104 18-139 416-519 (822)
204 PF10300 DUF3808: Protein of u 22.9 2.6E+02 0.0056 35.1 8.3 81 30-126 245-328 (468)
205 KOG0550 Molecular chaperone (D 22.8 2.8E+02 0.006 34.6 8.1 97 24-133 255-351 (486)
206 PF02259 FAT: FAT domain; Int 22.7 7.7E+02 0.017 28.6 11.8 98 17-114 183-307 (352)
207 PF02891 zf-MIZ: MIZ/SP-RING z 22.4 25 0.00055 30.7 -0.3 21 276-299 29-49 (50)
208 PF02892 zf-BED: BED zinc fing 21.3 60 0.0013 27.1 1.7 30 287-316 12-45 (45)
209 COG3898 Uncharacterized membra 20.9 1.1E+03 0.025 29.4 12.4 99 12-132 257-358 (531)
210 PRK10941 hypothetical protein; 20.8 5E+02 0.011 30.5 9.5 81 13-106 171-256 (269)
211 PRK14720 transcript cleavage f 20.3 4.3E+02 0.0093 36.2 9.8 102 22-139 34-151 (906)
212 KOG4234 TPR repeat-containing 20.3 4.7E+02 0.01 30.0 8.5 105 83-219 113-224 (271)
No 1
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=100.00 E-value=1.1e-128 Score=1127.37 Aligned_cols=428 Identities=32% Similarity=0.522 Sum_probs=410.6
Q ss_pred hhHHhhhhccCCHHHHcceeEEehHHHHHHHhcccc---hhhHHHHHHHHHhcCceeEeecCccccccCChHHHHHhHHh
Q 000686 237 NVAKSFWNNELSAEQKRSLFRVKIEDLKKHLTNRKE---KDLLSEAIEFAKAHRSWKFWECCDCSEKYGDWQSYMQHLCD 313 (1351)
Q Consensus 237 ~~~r~yW~~~ls~e~kr~FL~V~i~~L~~y~~~~~~---~~~Lseal~fak~n~sW~FW~C~~Cs~kF~d~~~~~~Hl~~ 313 (1351)
++||+||+ +||+|+||+||+|+|++|++||.+.++ +++|++||+||++|++|+||+||+|++||+|+++|++||++
T Consensus 1 ~~vr~yW~-sms~E~kr~FLkVsi~eL~sy~~~~~~~~a~~~Lseal~fak~n~sWrFWiCp~CskkF~d~~~~~~H~~~ 79 (466)
T PF04780_consen 1 DRVRSYWN-SMSSEQKRDFLKVSIDELKSYYESVYDREAADALSEALSFAKENKSWRFWICPRCSKKFSDAESCLSHMEQ 79 (466)
T ss_pred CchhHhhc-cCCHHHhcCceeeEHHHHHHHHHhccchHHHHHHHHHHHHHHhcCceeEeeCCcccceeCCHHHHHHHHHH
Confidence 47999999 999999999999999999999999954 99999999999999999999999999999999999999999
Q ss_pred hccccCcccccccCCCCCCHHHHhhhhcCCcccccHHHHHHHHHhhcccCcCCCCchhhhhhcCcCCCCCCCcchhhhhh
Q 000686 314 FHDLRIHQDLASIHPKIVDEDSREMIFNGEWKPVDTEEAIKILENQSKSESYNTDDSYMRAEKGQGEYKGCSDEDVLLTK 393 (1351)
Q Consensus 314 eH~~~l~p~l~~~~pq~id~~w~~~i~~~~WkPvD~~aa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (1351)
+|+++++|+++++|||+||++|++||++|+||||||+||++|||||+|++++ |.+
T Consensus 80 eH~~~l~P~lqs~lPqrId~~w~e~I~~~~WkPvD~~AA~~mik~~~k~~~~-----------~~~-------------- 134 (466)
T PF04780_consen 80 EHPAGLKPKLQSVLPQRIDDDWAEMISVGSWKPVDAVAAVEMIKNRLKDVKS-----------FVY-------------- 134 (466)
T ss_pred hhhhhcChhhhhhcCcccCHHHHHHHhcCCCccccHHHHHHHHHHHHhhcch-----------hhh--------------
Confidence 9999999999999999999999999999999999999999999999999887 555
Q ss_pred ccCCCCcccccCCCCCCCCCCChHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHhhcccCCccccc-cCCCC-C
Q 000686 394 QLGSESDKEASSIAPTDWPLSDDNKRIALLESLHGTFQFLLRYSFLIQVEIDEVIKYAVAMLKTRFSDSHLR-NLGPE-T 471 (1351)
Q Consensus 394 ~~~~~~~~~~~~~~~~dWPl~dD~eR~klL~kI~~~f~~l~~~k~Ls~s~~~~vi~ft~~~l~~~~s~~~l~-~~~~~-t 471 (1351)
+|||+++ ||||+|+||+|||||||.+|++||+||||||||+||||+||++||++++++++++ +|+++ |
T Consensus 135 --~~gw~~~--------WPla~DeeR~klLkkI~~ll~~l~~~k~Ls~s~~~~vi~ft~~~L~~l~v~~~~L~~~~l~~t 204 (466)
T PF04780_consen 135 --KNGWSKD--------WPLADDEERAKLLKKIHSLLKSLCKHKILSCSHRDWVIQFTVEELQKLEVSSQLLVNCSLDET 204 (466)
T ss_pred --hcCCCCC--------CCCCCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHhhHHHHhccCcchhhhhhccCCCC
Confidence 4555576 9999999999999999999999999999999999999999999999999655555 88888 9
Q ss_pred cceeeccCCcchHHHHHHHHHhhccccccCCCCCccccccccCCccccccceeecCCcceEEEeccc-------------
Q 000686 472 LKLVCFLESSQLNSIIHKLQHVAGTLSENTGIGNSTDEQLTGAKTFDIKEDVALNDNSSYLILDGVL------------- 538 (1351)
Q Consensus 472 p~~IcFLe~~~L~~il~fL~~l~~~l~~~~~~~~~~~~~~~~~~~~~vke~I~l~~~~s~LlLD~rl------------- 538 (1351)
|||||||||+||++||+||++|++. +++|+++|++++|+|+++++|||+|+||+|||+||||+||
T Consensus 205 P~~ICFLe~~~L~~Il~fL~~l~~~--~~~~~~~v~~~~~~~~~~~~vkekI~ld~~~S~LLLDkrll~~~~~~~dd~gt 282 (466)
T PF04780_consen 205 PQCICFLECSQLNKILKFLQELKCR--RDDGTSLVCRDVDSFWEGSRVKEKIDLDSDFSCLLLDKRLLKGELDPFDDEGT 282 (466)
T ss_pred CceeEecCcHHHHHHHHHHHHHhhc--cccCcccccccccccccccccceeeecCCccceeeechhhhccCCCccCcCCc
Confidence 9999999999999999999999988 9999999999999999999999999999999999999999
Q ss_pred --------------cCCCceeEeecccccchhhccchHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHH
Q 000686 539 --------------SYDTHIVSWLYLGHEVGEAIKLWARLRESNRGQRVKLFESFKMERSKFVKMYEERRKLSKKWDALE 604 (1351)
Q Consensus 539 --------------~~~D~~~sWL~~~~s~~e~~~sw~~~re~~~~~~~~vl~~~~~~~~~L~~~~~~K~~~l~y~~al~ 604 (1351)
|+||+|+||||+|||++++|++|+++|+||++||++|||+|++||++|+++|++|+++|+||+||+
T Consensus 283 i~~~~~~~~~~~~~~~gD~ilsWlf~~~s~~~~l~sw~~~~~~~~~~~~avl~~v~~~~~~L~~~y~kK~~~l~ye~aL~ 362 (466)
T PF04780_consen 283 INVFDPNVHYADVQPQGDDILSWLFDGPSIDEQLPSWIRMREHNLDIWVAVLRAVEKEFRTLQSKYEKKCEHLSYEEALQ 362 (466)
T ss_pred eeccCCCcccccCCCCCCceeEEeccCCcccccccchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhhcccCcchhhhhHHHHHHHHHHHH-HHhhhHhHhhhhHHHHHHHHHhhhhhhccccCcccc----cccc
Q 000686 605 AVNGIFADEKKRRDENPEYVWRTFESLLRERLKEL-EERIDAAAAAYQFELEFILNVLETDRAVAAFQFENT----SRVH 679 (1351)
Q Consensus 605 ~ve~lc~~e~~rR~~~~e~~~~~y~slL~~r~~e~-~~~~~~~~~~~~~~~~~i~~vl~~~~~~~~f~~~~~----~~~~ 679 (1351)
+|||||++|++||++++||+||+||||||+||||+ ++++| +++++|+|||||+|||+||++ |+|+|.+. |.|+
T Consensus 363 ~ve~lc~~E~~rR~~~~e~~~~~y~slL~~~~eel~~~~~d-~~~~~k~~l~~v~~Vl~~a~~-~~f~~~~~~~~~~~i~ 440 (466)
T PF04780_consen 363 AVENLCLEEDKRRENLPEDQWQSYASLLRKRCEELVENDDD-NSLSTKFELDAVRDVLKEAST-PTFNFFGYEDCTSLIR 440 (466)
T ss_pred HHHHHHhhcccccccccchhhHHHHHHHHHHHHHHhccccc-ccccchhhHHHHHHHHhhccc-CCCCCcccHHHHHHHh
Confidence 99999999999999999999999999999999999 57777 999999999999999999999 88888776 7999
Q ss_pred cccc-CchhHHHHHHhhhhhcccccc
Q 000686 680 ENWN-QSDEYVGEKILSWTNQLGNDI 704 (1351)
Q Consensus 680 ~~~~-~~d~~v~~~i~~~~~~~~~~~ 704 (1351)
++.+ .+|+.|.++|..++++|+.+|
T Consensus 441 ~~~s~~~dd~~~~~~~~l~s~v~~~~ 466 (466)
T PF04780_consen 441 DLKSGESDDRVKKSIHLLDSVVQFKV 466 (466)
T ss_pred cccccccchHHHHHHHHHHHHHhhcC
Confidence 9999 999999999999999998764
No 2
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-93 Score=856.13 Aligned_cols=742 Identities=21% Similarity=0.299 Sum_probs=622.3
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHhhcccC-CccccccCCCCCcceeeccCCcchHHHHH
Q 000686 410 DWPLSDDNKRIALLESLHGTFQFLLRYSFLIQVEIDEVIKYAVAMLKTRF-SDSHLRNLGPETLKLVCFLESSQLNSIIH 488 (1351)
Q Consensus 410 dWPl~dD~eR~klL~kI~~~f~~l~~~k~Ls~s~~~~vi~ft~~~l~~~~-s~~~l~~~~~~tp~~IcFLe~~~L~~il~ 488 (1351)
+||++.|++|+++|++||.+++.|+.+||+||++++|+|.||+.||..+. |.+.+.++.++|||+||||+++.|++|++
T Consensus 1 ~~~~~~~~~~~~llk~i~l~l~~~~~~k~~s~sir~~~m~~p~~~l~~~~~Seh~~~~~~v~t~qs~~~le~~~l~~i~~ 80 (806)
T KOG1887|consen 1 EWPLAEDEERSKLAKEIKLLLVSFCDRKILSCSIRDWLMGFPVKHLGQLEVSEHSLDSRLVETPQSICFLENPELYQVLD 80 (806)
T ss_pred CCchhhhhhHHHHHHHHHHHHhhhhhhhhccCcccchhhcCCHHHhccceecccccchhhhcccchhhhhccHHHHHHHH
Confidence 49999999999999999999999999999999999999999999998887 99999999999999999999999999999
Q ss_pred HHHHhhccccccCCCCCccccccccCCccccccceeecCCcceEEEeccc---------------------------cCC
Q 000686 489 KLQHVAGTLSENTGIGNSTDEQLTGAKTFDIKEDVALNDNSSYLILDGVL---------------------------SYD 541 (1351)
Q Consensus 489 fL~~l~~~l~~~~~~~~~~~~~~~~~~~~~vke~I~l~~~~s~LlLD~rl---------------------------~~~ 541 (1351)
||..+++. |++|++++++++++++..+.+|++|++|+++|+|++|+|+ ++|
T Consensus 81 ~~~~~~~~--~~~g~~l~~~~~~~~~~~~~~~~k~d~d~~~~~~~~~~rl~~~~~~~~~~~g~~n~~~p~~~~~~~~~~~ 158 (806)
T KOG1887|consen 81 FLKKIKCQ--RNDGTGLVCRAVYSFFSRTRVKSKIDFDAQFSVLLLDKRLLKSKGNRFDDEGTINVFDPEAHYAKTKSQL 158 (806)
T ss_pred HHHhhccc--cccCCccccccccceeeeeecccccCCchhhhhhhhcchhhhccCccccCCCcccccCchHhhhhhhhhc
Confidence 99999999 9999999999999999999999999999999999999999 899
Q ss_pred CceeEeecccccchhhccchHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhhhhhhhhhhcccCc
Q 000686 542 THIVSWLYLGHEVGEAIKLWARLRESNRGQRVKLFESFKMERSKFVKMYEERRKLSKKWDALEAVNGIFADEKKRRDENP 621 (1351)
Q Consensus 542 D~~~sWL~~~~s~~e~~~sw~~~re~~~~~~~~vl~~~~~~~~~L~~~~~~K~~~l~y~~al~~ve~lc~~e~~rR~~~~ 621 (1351)
|.+++||.++.+.+..| |+++|++|+++|++|++++++||.+|.++|++|+..+.|++|++.++|+|++||+||+|.+
T Consensus 159 d~iiswl~~~v~~d~~f--p~~~~~~nl~~~~~~~rav~~tc~~~~t~~~~~~~~~~~~~~~~~~~~k~~~ed~r~~n~~ 236 (806)
T KOG1887|consen 159 DDIISWLEDYVLENKIF--PRPIREHNLDIWMAVLRAKQFTCRTLATKYAKKILVLKYDAALTDPENKCMREDERRKNKP 236 (806)
T ss_pred chhhhhhhhhhhccccC--CchhhhccchhHHHHHHHHHHHHHHHhhHHHHHHHhhchhhhhcchhhhhcchhhhhhcch
Confidence 99999999988888887 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhHhHhhhhHHHHHHHHHhhhhhhccccCcccc----ccccccccCchhHHHHHHhhhh
Q 000686 622 EYVWRTFESLLRERLKELEERIDAAAAAYQFELEFILNVLETDRAVAAFQFENT----SRVHENWNQSDEYVGEKILSWT 697 (1351)
Q Consensus 622 e~~~~~y~slL~~r~~e~~~~~~~~~~~~~~~~~~i~~vl~~~~~~~~f~~~~~----~~~~~~~~~~d~~v~~~i~~~~ 697 (1351)
+++|..||++||+.|+|...+. .+.+++++++|++||.+++. |+|+|.+. +.+++|++.+|++|..+|..||
T Consensus 237 ~dq~~~y~~~~~~~~qe~~~~~---~~~~~~~~~~v~d~~~~~s~-p~~~~~~~~~c~N~~~~~~~~~~~~~~~~i~~l~ 312 (806)
T KOG1887|consen 237 EDQWLEYEQLLLDSCQEQQIEQ---SLQTKLFLCAVRDVLEGASS-PTFAFADASDCLNLIREHKQEKDDAVLPSIDLLK 312 (806)
T ss_pred HHHHHHHHHhchHHHHHHHHHh---hhhhhhHHHHHHhhhccccC-CCCCccchHhhcchhhhccccccceecCCcchhh
Confidence 9999999999999999985333 38899999999999999999 99999998 7999999999999999999999
Q ss_pred hccccccccchhhHHHhHHHHHHHhhhccccccccchhhhhhhhHHHHHHHHhhhhhHHHHHhHhhhhhccCCCCccccc
Q 000686 698 NQLGNDIWLENVRIITSIVSMKLFNLQLGEISAYEYQLILLPMFRSLVKSRLERHIDEEAVKKLNEIQKGLEEPDNKGQT 777 (1351)
Q Consensus 698 ~~~~~~~~~iD~~I~~~~~~~~~l~~~L~~~s~~Dyr~~ilp~~k~~l~~~L~~~~~~da~~k~~aa~~~~l~~~~~~~~ 777 (1351)
.+++.+|.++|++|+.++++|+.|.+.|.+++|||||+||++++|.|+ ++++.+|+.++|.+++...+ .+|++.
T Consensus 313 s~s~~~v~~~~s~il~~~~sr~~l~~~~~r~~~~~~~s~~~~~~~~~~---~~e~k~~~~k~k~~~~~~~l---~~e~ek 386 (806)
T KOG1887|consen 313 SVSTQKVLLKDSKILLISESRISLLNSLSRTSTFDNRSYDLRLKKPFL---LDEIKNMEKKAKKDLAEADL---LSELEK 386 (806)
T ss_pred hhhhheeccchhhhhccchhhhhhhhcccccccccchhhhhhhcchhh---hhhhhhcchhhhhhhhhhhh---hhHHHH
Confidence 999999999999999999999999999999999999999999999999 99999999999999754443 222222
Q ss_pred CCCCccccccccccccchhhhhhccccccCCCCccCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCcchhhhhhh
Q 000686 778 QGKSKNKKNKNKNKKRKDQREAKDFGVTRDIEQPLETGDTEQPSETGDMEQPSATRDIEQPSETGDIKQPSLPQEKAVQI 857 (1351)
Q Consensus 778 ~~~~~~~~~sk~kkk~~d~r~~kd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ee~~~~ 857 (1351)
++.+ ++++|+|+ .+- ++.+-..-++.-++..+|..++ ++++.|+++.++. .+|
T Consensus 387 ~~~~--~~~~~~k~-~~~-~~~~s~~~ss~l~~~~~~~~~~---------------~l~~~~s~~s~~~----~~e---- 439 (806)
T KOG1887|consen 387 EKPS--KHQSKKKK-QGS-NKRTSTSKSSLLDKTVEHKHSH---------------GLEPYSSSPSLGK----SEE---- 439 (806)
T ss_pred hhhc--cccccccc-ccc-ccCcccccCCcccccccccccc---------------ccCCCCCcccccc----ccC----
Confidence 2111 33333321 111 1221121222224666676666 7999999999999 998
Q ss_pred hHHHHHHHHhhhhhhhchHhhhhhhhhhcc--cccccccccccchhhhcccccCCCcccCCCCCCCCCCCCCccCCCCCC
Q 000686 858 VDDMQQLIATENAEKKSNEKEKSLEETDSK--GQTRGKSKNKKNKNKKRKYQGEHADFCATGDIERPLETGDIEQPSGTG 935 (1351)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~er~le~tl~~--~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 935 (1351)
+.|++ ++++.. |+.+++. +|.
T Consensus 440 -----~s~~~--------------~~~~~~e~g~le~s~--------------------------------------~~~ 462 (806)
T KOG1887|consen 440 -----GSMEP--------------EDGLSNENGNLEISS--------------------------------------NTR 462 (806)
T ss_pred -----Ccccc--------------cccccCCCcchhhcc--------------------------------------ccc
Confidence 88888 777777 5555543 677
Q ss_pred ccccccccCCCCCCCCCccccccCCCCCCCccccccccccccchhhhhcccccccchhhHHHhhccCcccCcccccCCC-
Q 000686 936 DIQQTSETGDIEQPSLPQEKAVQNDNPNSEKDERADDLQQSITTDEKLREENVKYQLQSEHEARLNVNVLGTGLGKEAA- 1014 (1351)
Q Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~g~~~~~~GL~Nl~G- 1014 (1351)
++.+.++.+ +|..+ |+ .++.+++ ......|.. . .
T Consensus 463 ~q~e~~k~~------------~~~~~-p~-------------------------e~~~s~~-----~e~~~~~~~-~-~~ 497 (806)
T KOG1887|consen 463 NQEEATKDP------------DMKNM-PP-------------------------EDSRSSH-----TESAIGGAA-A-RY 497 (806)
T ss_pred chhhcccCc------------ccccC-CC-------------------------ccccccc-----ccccccccc-c-ee
Confidence 676666552 22333 23 1111111 000000110 0 1
Q ss_pred ChHHHHHHHHhhCcHHHHHHHhcCCCccccCCCCchHHHHHHHHHHH---hc-CCCCcChHHHHHHHHhhccCCcccccc
Q 000686 1015 NNFLYMIIQSLWNLREFQEECKKKLDEVQKHDGNPCIVCAFFDICAA---KN-RGEAVDPTELRIALSTYYCNQNNFQEG 1090 (1351)
Q Consensus 1015 TCYLNSILQ~L~hip~FRe~LLs~~~~~h~~~~~pcV~caL~~LF~s---~~-~~~~vsP~~Lr~aL~k~~p~~~~F~~g 1090 (1351)
+.-+.++|-+++++..+.+.++..+.+.+. . .++++|+++|.. .. ....+....|...+..+. ..| .
T Consensus 498 ~saldm~lk~~~n~~i~~e~l~~~~q~~~~---~-~vp~al~~~~~~s~~~~~~~~~~~S~lL~~ll~~l~---~~~--~ 568 (806)
T KOG1887|consen 498 NSALDMTLKALLNIKVLKEDLLKNRQPLVA---L-QVPIALQNFFPASVSESIKHEGVYSELLSDLLLSLE---EVH--N 568 (806)
T ss_pred hhHHHHHHHHhhhhhhhhcccccccchhcc---c-cCcchhhhcCCcchHHHHHhhhhHHHHHHHHHhhhH---HHh--h
Confidence 334566777899999999988887654332 2 578888888832 11 223333444444444432 223 3
Q ss_pred ccccHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCccccccceeEEEeeeeeccCCCCcccccccceeeeecc
Q 000686 1091 QVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRSGYQKCTYLSFGIS 1170 (1351)
Q Consensus 1091 ~QqDA~EFL~~LLd~LH~~l~~~~s~~eSE~~~~~~~~c~~~~cIVh~LFgG~L~s~I~C~~Cg~~S~~~~F~dLsl~I~ 1170 (1351)
+..||++.+.++|+.+| +|.++...|+++++||+....++.|.+|+..+++.+++++++.|.
T Consensus 569 ~ss~~~~v~~aile~~~------------------~Wk~~er~~l~~~lf~l~~~e~~Sc~~cr~~~n~peqsS~~~~~~ 630 (806)
T KOG1887|consen 569 ASSSAADVVVAILEFWQ------------------CWKNPERESLVNRLFTLEEKERMSCSKCRRDLNYPEQSSYGIVIA 630 (806)
T ss_pred hcchhhHHHHHHHhccc------------------ccccHHHHHHHHhhhhhhhhhhccccccccCCCCcchhhhhhhcc
Confidence 45788888888888887 799998999999999999999999999999999999999999999
Q ss_pred cchhhhhcccccccCHHHHHHHhcCCCcccc-----cCCCcceEEEEEecCCceEEEEEEeecCCCccccccceeeccCc
Q 000686 1171 ANNLRSLKNEHMDMSSKKVLELMGLGEQMTC-----GCGQLNSIYHSLWRLPHVFVSVIDWQRGDESSEDISTTLSALSN 1245 (1351)
Q Consensus 1171 a~slr~~k~~~~~~SF~elLk~~~~~d~~~C-----~Cgkk~~kq~~I~rlP~VLtIhLkRFs~~~s~~dIsk~l~si~~ 1245 (1351)
+.++++.++.+++.+|.++|+...|++.+.| |||+.+.++|.|.++|+||||+|.|.+. ++..+|..|++.+.+
T Consensus 631 a~slr~~k~a~~n~~f~~ilk~i~m~~~m~cD~~~gGCgk~n~v~h~is~~P~vftIvlewEk~-ETe~eI~~T~~aL~t 709 (806)
T KOG1887|consen 631 ADSLRQLKCAFQNITFEDILKNIRMNDKMLCDKETGGCGKANLVHHILSPCPPVFTIVLEWEKS-ETEKEISETTKALAT 709 (806)
T ss_pred chhhhhHHHHhhhhhHHHHHHHhhhhhhhcccccCCCCcchhhhhhhcCCCCCeeEeeeehhcc-cchHHHHHHHHHHHh
Confidence 9999999998888999999999989999999 8999999999999999999999999876 788999999999999
Q ss_pred ccccccccc-CCCCCceEEEEEEEEEeCCCCeEEEEEEecCCCCCEE--EeeCCeeeEcCchhhhhhccCcccccccccc
Q 000686 1246 ELDLSKLFQ-GYLPDYTYFVVSMVCFCKDRQHSVCFLYDDQHDEHYV--QHSDSNVEAYSEVNILATDDNHSETLDMMIS 1322 (1351)
Q Consensus 1246 ~LDLs~~y~-gld~~~~Y~LvAVV~H~geGGHY~AyvR~~~~~g~Wy--~FDDs~Vt~VssWe~Vlsk~~~s~~~p~vl~ 1322 (1351)
++|++.+|+ |++|.++|.|++||++++++++|+|+++ ..|+|+ .++|..+++||+|.+|+..|......|+++|
T Consensus 710 eidis~~y~~g~ep~t~yrLVSmv~~~e~~~~~~C~Ay---e~Nrwvs~r~~~~~~e~iG~w~dvvr~c~e~~vrpeil~ 786 (806)
T KOG1887|consen 710 EIDISRLYREGLEPNTKYRLVSMVGNHEEGEEYICFAY---EPNRWVSLRHEDSQGEVVGDWKDVVRFCGERKVRPEILF 786 (806)
T ss_pred hhhHHHHhhhccCcCceeEEEEEeeeccccceEEEeec---cCCcchhhHHHHHHhhhccchHHHHHHHhcccccHHHHH
Confidence 999999995 8899999999999999978999999999 688999 8899999999999999998854445555555
Q ss_pred cce
Q 000686 1323 FQR 1325 (1351)
Q Consensus 1323 ~Qp 1325 (1351)
|++
T Consensus 787 ye~ 789 (806)
T KOG1887|consen 787 YEA 789 (806)
T ss_pred HHH
Confidence 554
No 3
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-49 Score=462.53 Aligned_cols=293 Identities=19% Similarity=0.284 Sum_probs=240.3
Q ss_pred ccCcccCcccccCCCChHHHHHHHHhhCcHHHHHHHhcCCCccccCCCCchHHHHHHHHHHH-hc-CCCCcChHHHHHHH
Q 000686 1000 LNVNVLGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKHDGNPCIVCAFFDICAA-KN-RGEAVDPTELRIAL 1077 (1351)
Q Consensus 1000 ~g~~~~~~GL~Nl~GTCYLNSILQ~L~hip~FRe~LLs~~~~~h~~~~~pcV~caL~~LF~s-~~-~~~~vsP~~Lr~aL 1077 (1351)
.+....+.||.|+|||||+||+||||.|+|+|.+||++..|....+....|++|+++..+.. +. .+.+++|..|..-|
T Consensus 102 ~~~~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~A~~~~g~pisP~~i~s~L 181 (545)
T KOG1865|consen 102 DRPAAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITRALHNPGHPISPSQILSNL 181 (545)
T ss_pred cccccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHHHhcCCCCccChHHHHHhh
Confidence 45677899999998899999999999999999999999987544445778999999999964 44 55599999999999
Q ss_pred HhhccCCccccccccccHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCccccccceeEEEeeeeeccCCCCcc
Q 000686 1078 STYYCNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRS 1157 (1351)
Q Consensus 1078 ~k~~p~~~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~s~~eSE~~~~~~~~c~~~~cIVh~LFgG~L~s~I~C~~Cg~~S 1157 (1351)
..+. ..|..|.|+||||||++++|.|+..+....... + .-...+++||++|||.++++|+|.+|.++|
T Consensus 182 ~~I~---~~f~~grQEDAHEFLr~~vd~mqk~cL~g~~~~---~------~~sq~ttlv~~iFGG~LrS~vkC~~C~~vS 249 (545)
T KOG1865|consen 182 RNIS---AHFGRGRQEDAHEFLRFTVDAMQKACLPGHKQV---D------PRSQDTTLVHQIFGGYLRSQIKCLHCKGVS 249 (545)
T ss_pred hhhc---ccccCCchhhHHHHHHHHHHHHHHhhcCCCccC---C------cccccceehhhhhccchhhceecccCCCcc
Confidence 8885 678889999999999999999999876322100 0 012357999999999999999999999999
Q ss_pred c-ccccceeeeecccchhhhhcccccccCHHHHHHHhc------CCCcccc-cCCCcce--EEEEEecCCceEEEEEEee
Q 000686 1158 G-YQKCTYLSFGISANNLRSLKNEHMDMSSKKVLELMG------LGEQMTC-GCGQLNS--IYHSLWRLPHVFVSVIDWQ 1227 (1351)
Q Consensus 1158 ~-~~~F~dLsl~I~a~slr~~k~~~~~~SF~elLk~~~------~~d~~~C-~Cgkk~~--kq~~I~rlP~VLtIhLkRF 1227 (1351)
+ |++++++.+.|.. . .++.++|+.|. .++.|+| +|++++. |+++|.+.|+|||||||||
T Consensus 250 ~tyE~~~dltvei~d--~---------~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF 318 (545)
T KOG1865|consen 250 DTYEPYLDLTLEIQD--A---------SSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRF 318 (545)
T ss_pred cccccccceEEEecc--c---------hhHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceEEEeeehh
Confidence 8 5689999888862 1 23444444432 3569999 9999875 7899999999999999999
Q ss_pred cCCCccccccceeeccCccccccccccCC-CCCceEEEEEEEEEeC---CCCeEEEEEEecCCCCCEEEeeCCeeeEcCc
Q 000686 1228 RGDESSEDISTTLSALSNELDLSKLFQGY-LPDYTYFVVSMVCFCK---DRQHSVCFLYDDQHDEHYVQHSDSNVEAYSE 1303 (1351)
Q Consensus 1228 s~~~s~~dIsk~l~si~~~LDLs~~y~gl-d~~~~Y~LvAVV~H~g---eGGHY~AyvR~~~~~g~Wy~FDDs~Vt~Vss 1303 (1351)
.. .+..+|.+ .+.||..|||.+|..+. +.+++|.|||||+|.| ..|||+||||. ..|.||.|||+.|+.++.
T Consensus 319 ~~-~~~gKI~K-~I~fPE~LDl~PyMS~~~e~s~~Y~LYavlVH~g~~~~~GHY~cYvks--~~g~Wy~~DDS~V~~~~~ 394 (545)
T KOG1865|consen 319 SN-GTGGKISK-PVSFPETLDLQPYMSQPNEGSTVYKLYAVLVHLGTSCHSGHYFCYVKS--QNGQWYKMDDSEVTQSSI 394 (545)
T ss_pred cc-Cccccccc-ccCCcccccccccccCCCCCCceEEEEEEEEeccccccCCceEEEEEc--CCCceEEccCceeeeccc
Confidence 87 56666655 36788899999976633 3467999999999997 57999999998 689999999999999874
Q ss_pred hhhhhhccCcccccccccccceEEEEEecC
Q 000686 1304 VNILATDDNHSETLDMMISFQRLIGLKQDH 1333 (1351)
Q Consensus 1304 We~Vlsk~~~s~~~p~vl~~QpYLLFYq~~ 1333 (1351)
+.|++ +|||||||.|.
T Consensus 395 -~~VLs-------------q~AYmLfY~R~ 410 (545)
T KOG1865|consen 395 -ESVLS-------------QQAYILFYARK 410 (545)
T ss_pred -cceec-------------ccceEEEEEee
Confidence 55654 78999999985
No 4
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.2e-43 Score=403.07 Aligned_cols=296 Identities=20% Similarity=0.274 Sum_probs=225.7
Q ss_pred cccccCCCChHHHHHHHHhhCcHHHHHHHhcCCCcc--ccCCCCchHHHHHHHHHHHhc---CCCCcChHHHHHHHHhhc
Q 000686 1007 TGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEV--QKHDGNPCIVCAFFDICAAKN---RGEAVDPTELRIALSTYY 1081 (1351)
Q Consensus 1007 ~GL~Nl~GTCYLNSILQ~L~hip~FRe~LLs~~~~~--h~~~~~pcV~caL~~LF~s~~---~~~~vsP~~Lr~aL~k~~ 1081 (1351)
+||.|+||||||||+||||+|+|+||++|+...+.. ..+....|+.|+|+.+|..+. ...++.|..|..+++...
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~ 80 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSWKHS 80 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhc
Confidence 699999779999999999999999999999975432 223345599999999998763 456789999888886654
Q ss_pred cCCccccccccccHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCccccccceeEEEeeeeeccCCCCcccc-c
Q 000686 1082 CNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRSGY-Q 1160 (1351)
Q Consensus 1082 p~~~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~s~~eSE~~~~~~~~c~~~~cIVh~LFgG~L~s~I~C~~Cg~~S~~-~ 1160 (1351)
+.|.++.||||||||..||+.||+++........ .-....++++++|+|.+.++++|..|++.+.. +
T Consensus 81 ---~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~---------~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e 148 (328)
T cd02660 81 ---RNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEAN---------DESHCNCIIHQTFSGSLQSSVTCQRCGGVSTTVD 148 (328)
T ss_pred ---hhhcccccccHHHHHHHHHHHHHHHhhccccccc---------ccccCCceeEEecccEEEeeeEcCCCCCccceec
Confidence 5688889999999999999999998765421000 00123689999999999999999999998874 5
Q ss_pred ccceeeeecccchhhhh-c---ccccccCHHHHHHHhc----CC-Ccccc-cCCCcce--EEEEEecCCceEEEEEEeec
Q 000686 1161 KCTYLSFGISANNLRSL-K---NEHMDMSSKKVLELMG----LG-EQMTC-GCGQLNS--IYHSLWRLPHVFVSVIDWQR 1228 (1351)
Q Consensus 1161 ~F~dLsl~I~a~slr~~-k---~~~~~~SF~elLk~~~----~~-d~~~C-~Cgkk~~--kq~~I~rlP~VLtIhLkRFs 1228 (1351)
+|.+++++|+....... + ......++.++|+.+. ++ ..|.| +|+.... ++..|.++|+||+|||+||.
T Consensus 149 ~f~~lsl~i~~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~Lii~lkRf~ 228 (328)
T cd02660 149 PFLDLSLDIPNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFAYKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFE 228 (328)
T ss_pred ccceeeeeccccccccccccccCCCCCCCHHHHHHHhcCccccCCCCccCCCCCCccceEEEEEecCCCceeEEEEEeEE
Confidence 89999999876432110 0 0112368888887653 22 13789 9998753 56789999999999999997
Q ss_pred CCCc--cccccceeeccCccccccccccC----------CCCCceEEEEEEEEEeC--CCCeEEEEEEecCCCCCEEEee
Q 000686 1229 GDES--SEDISTTLSALSNELDLSKLFQG----------YLPDYTYFVVSMVCFCK--DRQHSVCFLYDDQHDEHYVQHS 1294 (1351)
Q Consensus 1229 ~~~s--~~dIsk~l~si~~~LDLs~~y~g----------ld~~~~Y~LvAVV~H~g--eGGHY~AyvR~~~~~g~Wy~FD 1294 (1351)
.... ..++ ...+.+|..|||+++... ...+..|+|+|||+|.| ++|||+||+|. .+++||.||
T Consensus 229 ~~~~~~~~K~-~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~~~~~~--~~~~W~~~n 305 (328)
T cd02660 229 HSLNKTSRKI-DTYVQFPLELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKGTLDTGHYTAYCRQ--GDGQWFKFD 305 (328)
T ss_pred ecCCCCCcCC-CcEEeCCCEechhhhcccccccccccccCCCCceEEEEEEEEeeccCCCCcEEEEEEC--CCCcEEEEE
Confidence 5331 1222 234567777898876542 12357899999999998 78999999996 359999999
Q ss_pred CCeeeEcCchhhhhhccCcccccccccccceEEEEEe
Q 000686 1295 DSNVEAYSEVNILATDDNHSETLDMMISFQRLIGLKQ 1331 (1351)
Q Consensus 1295 Ds~Vt~VssWe~Vlsk~~~s~~~p~vl~~QpYLLFYq 1331 (1351)
|+.|+.++ +++|+. .+||||||.
T Consensus 306 D~~V~~~~-~~~v~~-------------~~ayil~Y~ 328 (328)
T cd02660 306 DAMITRVS-EEEVLK-------------SQAYLLFYH 328 (328)
T ss_pred CCeeEECC-HHHhcC-------------CCcEEEEeC
Confidence 99999996 577764 479999994
No 5
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.7e-43 Score=397.14 Aligned_cols=288 Identities=19% Similarity=0.259 Sum_probs=225.4
Q ss_pred CcccccCCCChHHHHHHHHhhCcHHHHHHHhcCCCccccCCCCchHHHHHHHHHHHhc--CCCCcChHHHHHHHHhhccC
Q 000686 1006 GTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKHDGNPCIVCAFFDICAAKN--RGEAVDPTELRIALSTYYCN 1083 (1351)
Q Consensus 1006 ~~GL~Nl~GTCYLNSILQ~L~hip~FRe~LLs~~~~~h~~~~~pcV~caL~~LF~s~~--~~~~vsP~~Lr~aL~k~~p~ 1083 (1351)
|+||.|+||||||||+||+|+|+|+||+++++..+..+.+....|++|+|+.+|.++. ....+.|..|..++....
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~l~~~~-- 78 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALASSGPGSAPRIFSSNLKQIS-- 78 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhccCCcchHHHHHHHHHHHHHhCCCCccChHHHHHHHHHHH--
Confidence 6899999779999999999999999999999866543444556699999999997643 678899999999998875
Q ss_pred CccccccccccHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCccccccceeEEEeeeeeccCCCCcccc-ccc
Q 000686 1084 QNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRSGY-QKC 1162 (1351)
Q Consensus 1084 ~~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~s~~eSE~~~~~~~~c~~~~cIVh~LFgG~L~s~I~C~~Cg~~S~~-~~F 1162 (1351)
+.|..+.||||+|||..||+.||.++.........+ .......++++++|+|++.++++|.+|+..+.. .+|
T Consensus 79 -~~f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~------~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~~ 151 (304)
T cd02661 79 -KHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAV------DPSSQETTLVQQIFGGYLRSQVKCLNCKHVSNTYDPF 151 (304)
T ss_pred -HhhcCcchhhHHHHHHHHHHHHHHHHhhhccccccc------CccccCCChhhhcCCcEEeeeEEeCCCCCCcCccccc
Confidence 568889999999999999999998865432110000 011234689999999999999999999998874 478
Q ss_pred ceeeeecccchhhhhcccccccCHHHHHHHhc------CCCcccc-cCCCcce--EEEEEecCCceEEEEEEeecCCCcc
Q 000686 1163 TYLSFGISANNLRSLKNEHMDMSSKKVLELMG------LGEQMTC-GCGQLNS--IYHSLWRLPHVFVSVIDWQRGDESS 1233 (1351)
Q Consensus 1163 ~dLsl~I~a~slr~~k~~~~~~SF~elLk~~~------~~d~~~C-~Cgkk~~--kq~~I~rlP~VLtIhLkRFs~~~s~ 1233 (1351)
..++++|+.. .++.++|+... ..+.|.| .|++... ++..|.++|+||+|||+||... ..
T Consensus 152 ~~l~l~i~~~-----------~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~iL~i~l~Rf~~~-~~ 219 (304)
T cd02661 152 LDLSLDIKGA-----------DSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNF-RG 219 (304)
T ss_pred eeeeeecCCC-----------CcHHHHHHHhcCceeeCCCCCeeCCCCCCccceEEEEEEecCCcEEEEEEeccccC-Cc
Confidence 8888888752 24555555432 1235789 9988764 5677999999999999999864 22
Q ss_pred ccccceeeccCccccccccccC-CCCCceEEEEEEEEEeC---CCCeEEEEEEecCCCCCEEEeeCCeeeEcCchhhhhh
Q 000686 1234 EDISTTLSALSNELDLSKLFQG-YLPDYTYFVVSMVCFCK---DRQHSVCFLYDDQHDEHYVQHSDSNVEAYSEVNILAT 1309 (1351)
Q Consensus 1234 ~dIsk~l~si~~~LDLs~~y~g-ld~~~~Y~LvAVV~H~g---eGGHY~AyvR~~~~~g~Wy~FDDs~Vt~VssWe~Vls 1309 (1351)
.++.. ...++..|||.++... ......|+|+|||+|.| ++|||+||+|+ .+|+||.|||..|+.|+ |+.|++
T Consensus 220 ~Ki~~-~v~f~~~L~l~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~--~~~~W~~~nD~~V~~v~-~~~v~~ 295 (304)
T cd02661 220 GKINK-QISFPETLDLSPYMSQPNDGPLKYKLYAVLVHSGFSPHSGHYYCYVKS--SNGKWYNMDDSKVSPVS-IETVLS 295 (304)
T ss_pred cccCC-eEecCCeechhhccccCCCCCceeeEEEEEEECCCCCCCcCCEEEEEC--CCCCEEEEeCCeeEECC-HHHhcC
Confidence 33322 2467778899886553 44567999999999998 56999999997 58999999999999995 687765
Q ss_pred ccCcccccccccccceEEEEEe
Q 000686 1310 DDNHSETLDMMISFQRLIGLKQ 1331 (1351)
Q Consensus 1310 k~~~s~~~p~vl~~QpYLLFYq 1331 (1351)
.+||||||.
T Consensus 296 -------------~~aYil~Y~ 304 (304)
T cd02661 296 -------------QKAYILFYI 304 (304)
T ss_pred -------------CCcEEEEeC
Confidence 489999993
No 6
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.9e-43 Score=400.12 Aligned_cols=286 Identities=16% Similarity=0.156 Sum_probs=217.1
Q ss_pred ccccCCCChHHHHHHHHhhCcHHHHHHHhcCCCccc-cCCCCchHHHHHHHHHHHhc-CCCCcChHHHHHHHHhhccCCc
Q 000686 1008 GLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQ-KHDGNPCIVCAFFDICAAKN-RGEAVDPTELRIALSTYYCNQN 1085 (1351)
Q Consensus 1008 GL~Nl~GTCYLNSILQ~L~hip~FRe~LLs~~~~~h-~~~~~pcV~caL~~LF~s~~-~~~~vsP~~Lr~aL~k~~p~~~ 1085 (1351)
||.|+|+||||||+||||+|+|+||+++++...... .+....|++++|+.||..+. ...++.|..|...|.+.++
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~i~p~~~~~~l~~~~~--- 77 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKKQEPVPPIEFLQLLRMAFP--- 77 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhCCCcCCcHHHHHHHHHHCc---
Confidence 899997799999999999999999999998764321 22334599999999998776 5668999999999988763
Q ss_pred cc------cccccccHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCccccccceeEEEeeeeeccCCC-Cccc
Q 000686 1086 NF------QEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCH-MRSG 1158 (1351)
Q Consensus 1086 ~F------~~g~QqDA~EFL~~LLd~LH~~l~~~~s~~eSE~~~~~~~~c~~~~cIVh~LFgG~L~s~I~C~~Cg-~~S~ 1158 (1351)
.| ..++|||||||+..||+.||+.+... ....++|+++|+|.+.++++|..|+ .++.
T Consensus 78 ~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~----------------~~~~~~i~~~F~g~~~~~~~C~~C~~~~~~ 141 (305)
T cd02657 78 QFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGA----------------GSKGSFIDQLFGIELETKMKCTESPDEEEV 141 (305)
T ss_pred CcccccCCCCccccCHHHHHHHHHHHHHHHhccc----------------CCCCcHHHHhhceEEEEEEEcCCCCCCCcc
Confidence 44 34589999999999999999886532 1236789999999999999999999 6666
Q ss_pred -ccccceeeeecccchhhhhcccccccCHHHHHHHhcCC-Ccccc-cCCCcc--eEEEEEecCCceEEEEEEeecCCCcc
Q 000686 1159 -YQKCTYLSFGISANNLRSLKNEHMDMSSKKVLELMGLG-EQMTC-GCGQLN--SIYHSLWRLPHVFVSVIDWQRGDESS 1233 (1351)
Q Consensus 1159 -~~~F~dLsl~I~a~slr~~k~~~~~~SF~elLk~~~~~-d~~~C-~Cgkk~--~kq~~I~rlP~VLtIhLkRFs~~~s~ 1233 (1351)
..+|.+++++|+.... ..++.++|.....+ ....| .|+... .++..|.++|+||+|||+||......
T Consensus 142 ~~e~f~~Lsl~i~~~~~--------~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~vLii~LkRF~~~~~~ 213 (305)
T cd02657 142 STESEYKLQCHISITTE--------VNYLQDGLKKGLEEEIEKHSPTLGRDAIYTKTSRISRLPKYLTVQFVRFFWKRDI 213 (305)
T ss_pred ccccceEEEeecCCCcc--------cccHHHHHHHhhhhhhhhcCcccCCCceEEEEEEeccCCcEEEEEEECCcccccc
Confidence 5689999999986421 12455555543211 13457 676654 36778999999999999999743221
Q ss_pred ccccce--eeccCccccccccccCCCCCceEEEEEEEEEeC---CCCeEEEEEEecCCCCCEEEeeCCeeeEcCchhhhh
Q 000686 1234 EDISTT--LSALSNELDLSKLFQGYLPDYTYFVVSMVCFCK---DRQHSVCFLYDDQHDEHYVQHSDSNVEAYSEVNILA 1308 (1351)
Q Consensus 1234 ~dIsk~--l~si~~~LDLs~~y~gld~~~~Y~LvAVV~H~g---eGGHY~AyvR~~~~~g~Wy~FDDs~Vt~VssWe~Vl 1308 (1351)
....++ .+.+|..|||+++.. ++.+|+|+|||+|.| ++|||+||+|.. .++.||.|||+.|+.|+. +.|+
T Consensus 214 ~~~~Ki~~~v~fP~~Ldl~~~~~---~~~~Y~L~~vI~H~G~~~~~GHY~~~~~~~-~~~~W~~fdD~~V~~~~~-~~v~ 288 (305)
T cd02657 214 QKKAKILRKVKFPFELDLYELCT---PSGYYELVAVITHQGRSADSGHYVAWVRRK-NDGKWIKFDDDKVSEVTE-EDIL 288 (305)
T ss_pred CceeecCcEEECCceEecccccC---CCCcEEEEEEEEecCCCCCCcEEEEEEEcC-CCCeEEEEECCceEEeCH-HHHH
Confidence 112232 356677788887554 346999999999998 579999999975 459999999999999985 7777
Q ss_pred hccCcccccccccccceEEEEEe
Q 000686 1309 TDDNHSETLDMMISFQRLIGLKQ 1331 (1351)
Q Consensus 1309 sk~~~s~~~p~vl~~QpYLLFYq 1331 (1351)
.... . -...+||||||.
T Consensus 289 ~~~~---~---~~~~~aYiL~Y~ 305 (305)
T cd02657 289 KLSG---G---GDWHIAYILLYK 305 (305)
T ss_pred hhcC---C---CCCceEEEEEEC
Confidence 5211 1 013689999994
No 7
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1e-43 Score=403.21 Aligned_cols=280 Identities=18% Similarity=0.232 Sum_probs=208.5
Q ss_pred ccccCCCChHHHHHHHHhhCcHHHHHHHhcCCCccccCCCCchHHHHHHHHHHHhc----CCCCcChHHHHHHHHhhccC
Q 000686 1008 GLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKHDGNPCIVCAFFDICAAKN----RGEAVDPTELRIALSTYYCN 1083 (1351)
Q Consensus 1008 GL~Nl~GTCYLNSILQ~L~hip~FRe~LLs~~~~~h~~~~~pcV~caL~~LF~s~~----~~~~vsP~~Lr~aL~k~~p~ 1083 (1351)
||.|+|+||||||+||||+| .+++++|+.+|.++. ...+++|..|..+|+...
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~---------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~~-- 57 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF---------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKREN-- 57 (300)
T ss_pred CccCCCcceehhHHHHHhhh---------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhhc--
Confidence 99999779999999999998 279999999997654 345799999999998765
Q ss_pred CccccccccccHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCccccccceeEEEeeeeeccCCCCccc-cccc
Q 000686 1084 QNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRSG-YQKC 1162 (1351)
Q Consensus 1084 ~~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~s~~eSE~~~~~~~~c~~~~cIVh~LFgG~L~s~I~C~~Cg~~S~-~~~F 1162 (1351)
+.|..++||||||||..||+.||+++.........+.............++++++|+|.+.++++|..|+++|. .++|
T Consensus 58 -~~f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f 136 (300)
T cd02663 58 -ELFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLNNNNNAEPQPTWVHEIFQGILTNETRCLTCETVSSRDETF 136 (300)
T ss_pred -CCCCCCccccHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCcCCCChhhhCceEEEeeEEeCCCCCCcccccee
Confidence 57889999999999999999999998754310000000000111223468899999999999999999999887 4589
Q ss_pred ceeeeecccchhhhhcccccccCHHHHHHHhc----C--CCcccc-cCCCcce--EEEEEecCCceEEEEEEeecCCCcc
Q 000686 1163 TYLSFGISANNLRSLKNEHMDMSSKKVLELMG----L--GEQMTC-GCGQLNS--IYHSLWRLPHVFVSVIDWQRGDESS 1233 (1351)
Q Consensus 1163 ~dLsl~I~a~slr~~k~~~~~~SF~elLk~~~----~--~d~~~C-~Cgkk~~--kq~~I~rlP~VLtIhLkRFs~~~s~ 1233 (1351)
.+++++|+.. .+++++|+.+. + ++.|.| +|+.++. ++..|.++|+||+|||+||......
T Consensus 137 ~~Lsl~i~~~-----------~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~ 205 (300)
T cd02663 137 LDLSIDVEQN-----------TSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQL 205 (300)
T ss_pred EEeccCCCCc-----------CCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEEEEeccCCceeEEEEEeEEeeccc
Confidence 9988888652 35667776542 2 347899 9988763 6778999999999999999753322
Q ss_pred cccccee--eccCcccccccccc-CCCCCceEEEEEEEEEeC---CCCeEEEEEEecCCCCCEEEeeCCeeeEcCchhhh
Q 000686 1234 EDISTTL--SALSNELDLSKLFQ-GYLPDYTYFVVSMVCFCK---DRQHSVCFLYDDQHDEHYVQHSDSNVEAYSEVNIL 1307 (1351)
Q Consensus 1234 ~dIsk~l--~si~~~LDLs~~y~-gld~~~~Y~LvAVV~H~g---eGGHY~AyvR~~~~~g~Wy~FDDs~Vt~VssWe~V 1307 (1351)
....++. +.+|..|||..+.. ...++..|.|+|||+|.| ++|||+||+| .+|+||.|||+.|+.|+ ++.|
T Consensus 206 ~~~~Ki~~~v~fp~~L~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k---~~~~W~~fdD~~V~~~~-~~~v 281 (300)
T cd02663 206 NRYIKLFYRVVFPLELRLFNTTDDAENPDRLYELVAVVVHIGGGPNHGHYVSIVK---SHGGWLLFDDETVEKID-ENAV 281 (300)
T ss_pred CCceecCceEecCcEEeccccccccCCCCeEEEEEEEEEEecCCCCCCceEEEEE---CCCcEEEEcCCceEEcC-HHHH
Confidence 1122333 34455555554322 122457999999999998 5799999999 58999999999999996 5888
Q ss_pred hhccCcccccccccccceEEEEEe
Q 000686 1308 ATDDNHSETLDMMISFQRLIGLKQ 1331 (1351)
Q Consensus 1308 lsk~~~s~~~p~vl~~QpYLLFYq 1331 (1351)
..-.. ......+||||||+
T Consensus 282 ~~~~~-----~~~~~~~aYiLfY~ 300 (300)
T cd02663 282 EEFFG-----DSPNQATAYVLFYQ 300 (300)
T ss_pred HHhcC-----CCCCCCceEEEEeC
Confidence 64220 11235789999996
No 8
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.9e-43 Score=403.45 Aligned_cols=288 Identities=17% Similarity=0.210 Sum_probs=218.4
Q ss_pred ccccCCCChHHHHHHHHhhCcHHHHHHHhcCCCccccC---------CCCchHHHHHHHHHHHhc--CCCCcChHHHHHH
Q 000686 1008 GLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKH---------DGNPCIVCAFFDICAAKN--RGEAVDPTELRIA 1076 (1351)
Q Consensus 1008 GL~Nl~GTCYLNSILQ~L~hip~FRe~LLs~~~~~h~~---------~~~pcV~caL~~LF~s~~--~~~~vsP~~Lr~a 1076 (1351)
||.|+||||||||+||+|+|+|+||++++......+.. ....|++++|+.||.++. ...++.|..|..+
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~~ 80 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVKA 80 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHHHHH
Confidence 89999779999999999999999999999865432211 012489999999998655 6678999999888
Q ss_pred HHhhccCCccccccccccHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCccccccceeEEEeeeeeccCCCCc
Q 000686 1077 LSTYYCNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMR 1156 (1351)
Q Consensus 1077 L~k~~p~~~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~s~~eSE~~~~~~~~c~~~~cIVh~LFgG~L~s~I~C~~Cg~~ 1156 (1351)
|. |..++||||+||+..||+.||.++..... +...++++++|+|.+.++++|..|++.
T Consensus 81 l~--------~~~~~QqDa~EFl~~lLd~L~~~l~~~~~--------------~~~~~~i~~~F~G~~~~~~~C~~C~~~ 138 (324)
T cd02668 81 LG--------LDTGQQQDAQEFSKLFLSLLEAKLSKSKN--------------PDLKNIVQDLFRGEYSYVTQCSKCGRE 138 (324)
T ss_pred hC--------CCCccccCHHHHHHHHHHHHHHHHhhccC--------------CcccchhhhhcceEEEEEEEeCCCCCc
Confidence 73 34578999999999999999988764310 123578999999999999999999998
Q ss_pred cc-ccccceeeeecccchhhhhcccccccCHHHHHHHhc----C--CCcccc-cCCCcce--EEEEEecCCceEEEEEEe
Q 000686 1157 SG-YQKCTYLSFGISANNLRSLKNEHMDMSSKKVLELMG----L--GEQMTC-GCGQLNS--IYHSLWRLPHVFVSVIDW 1226 (1351)
Q Consensus 1157 S~-~~~F~dLsl~I~a~slr~~k~~~~~~SF~elLk~~~----~--~d~~~C-~Cgkk~~--kq~~I~rlP~VLtIhLkR 1226 (1351)
+. ..+|.+++++|+.. .+|.++|+.+. + ++.|.| +|+.+.. ++..|.++|+||+|||+|
T Consensus 139 s~~~e~f~~l~l~i~~~-----------~sl~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~~i~~lP~iLii~LkR 207 (324)
T cd02668 139 SSLPSKFYELELQLKGH-----------KTLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLR 207 (324)
T ss_pred cccccccEEEEEEeccc-----------CCHHHHHHHhhCceecCCCccccCCCCCceeeeEEEEEecCCCCeEEEEEEc
Confidence 76 45899888888641 35666665532 2 346899 9988764 667899999999999999
Q ss_pred ecCCC---ccccccceeeccCccccccccccCC-CCCceEEEEEEEEEeC---CCCeEEEEEEecCCCCCEEEeeCCeee
Q 000686 1227 QRGDE---SSEDISTTLSALSNELDLSKLFQGY-LPDYTYFVVSMVCFCK---DRQHSVCFLYDDQHDEHYVQHSDSNVE 1299 (1351)
Q Consensus 1227 Fs~~~---s~~dIsk~l~si~~~LDLs~~y~gl-d~~~~Y~LvAVV~H~g---eGGHY~AyvR~~~~~g~Wy~FDDs~Vt 1299 (1351)
|.... ...++ ...+.||..|||++++... ..+..|.|+|||+|.| ++|||+||+|+. .+|+||.|||+.|+
T Consensus 208 f~~d~~~~~~~Ki-~~~v~fp~~Ldl~~~~~~~~~~~~~Y~L~~vI~H~G~~~~~GHY~~~~k~~-~~~~W~~fdD~~V~ 285 (324)
T cd02668 208 FVFDRKTGAKKKL-NASISFPEILDMGEYLAESDEGSYVYELSGVLIHQGVSAYSGHYIAHIKDE-QTGEWYKFNDEDVE 285 (324)
T ss_pred ceeecccCcceeC-CcEEECCCeEechhhcccccCCCcEEEEEEEEEEcCCCCCCEeeEEEEECC-CCCcEEEEECCceE
Confidence 96422 12222 2335677789999876433 3457899999999998 579999999975 56999999999999
Q ss_pred EcCchhhhhhccCc-------cccc-ccccccceEEEEEe
Q 000686 1300 AYSEVNILATDDNH-------SETL-DMMISFQRLIGLKQ 1331 (1351)
Q Consensus 1300 ~VssWe~Vlsk~~~-------s~~~-p~vl~~QpYLLFYq 1331 (1351)
.|+ |+.|...... +... -++....||||||.
T Consensus 286 ~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 286 EMP-GKPLKLGNSEDPAKPRKSEIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred EcC-HHHhhcccccccccccccccCCCccccCceEEEEeC
Confidence 996 5766542210 0000 02457899999994
No 9
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.2e-43 Score=416.90 Aligned_cols=288 Identities=17% Similarity=0.153 Sum_probs=220.8
Q ss_pred cCcccccCCCChHHHHHHHHhhCcHHHHHHHhcCCCccccCCCCchHHHHHHHHHHH-hc---CCCCcChHHHHHHHHhh
Q 000686 1005 LGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKHDGNPCIVCAFFDICAA-KN---RGEAVDPTELRIALSTY 1080 (1351)
Q Consensus 1005 ~~~GL~Nl~GTCYLNSILQ~L~hip~FRe~LLs~~~~~h~~~~~pcV~caL~~LF~s-~~---~~~~vsP~~Lr~aL~k~ 1080 (1351)
+.+||.|+|+|||||||||||+|+|+||++|+...+.........|++++|..+|.. |. ...+++|..|..++...
T Consensus 118 G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl~~l~~~ 197 (440)
T cd02669 118 GFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENIKDRKSELVKRLSELIRKIWNPRNFKGHVSPHELLQAVSKV 197 (440)
T ss_pred CccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccccCCCcHHHHHHHHHHHHHhccccCCCccCHHHHHHHHHhh
Confidence 569999997799999999999999999999998764321112334899999999964 44 25789999999999876
Q ss_pred ccCCccccccccccHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCccccccceeEEEeeeeeccCCCC-----
Q 000686 1081 YCNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHM----- 1155 (1351)
Q Consensus 1081 ~p~~~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~s~~eSE~~~~~~~~c~~~~cIVh~LFgG~L~s~I~C~~Cg~----- 1155 (1351)
. .+.|..++||||||||..||+.||+++.... ....|+|+++|+|++.+.++|..|+.
T Consensus 198 ~--~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~---------------~~~~~ii~~~F~G~l~~~~~c~~~~~~~~~~ 260 (440)
T cd02669 198 S--KKKFSITEQSDPVEFLSWLLNTLHKDLGGSK---------------KPNSSIIHDCFQGKVQIETQKIKPHAEEEGS 260 (440)
T ss_pred c--ccccCCcccCCHHHHHHHHHHHHHHHhccCC---------------CCCCCcceeccCceEEEEEEeeccccccccc
Confidence 4 2578889999999999999999999876421 12378999999999999999876542
Q ss_pred ----------ccc-ccccceeeeecccchhhhh---cccccccCHHHHHHHhcCCCcccc-cCCCcc--eEEEEEecCCc
Q 000686 1156 ----------RSG-YQKCTYLSFGISANNLRSL---KNEHMDMSSKKVLELMGLGEQMTC-GCGQLN--SIYHSLWRLPH 1218 (1351)
Q Consensus 1156 ----------~S~-~~~F~dLsl~I~a~slr~~---k~~~~~~SF~elLk~~~~~d~~~C-~Cgkk~--~kq~~I~rlP~ 1218 (1351)
+|. ..||++++++|+....... ....++.+++++|+. |.| .|...+ .++..|.++|+
T Consensus 261 ~~~~~~c~~~~s~~~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L~k------y~~~~c~~~~~a~k~~~I~~LP~ 334 (440)
T cd02669 261 KDKFFKDSRVKKTSVSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLKK------YDGKTETELKDSLKRYLISRLPK 334 (440)
T ss_pred ccccccccccceeeeccceEEEecCCCCccccccccccccCcccHHHHHHh------cCCccceecccceEEEEEeeCCc
Confidence 333 3599999999987532110 111234688888854 455 554433 47788999999
Q ss_pred eEEEEEEeecCCCc-cccccceeeccCcc-cccccccc----CCCCCceEEEEEEEEEeC---CCCeEEEEEEecCCCCC
Q 000686 1219 VFVSVIDWQRGDES-SEDISTTLSALSNE-LDLSKLFQ----GYLPDYTYFVVSMVCFCK---DRQHSVCFLYDDQHDEH 1289 (1351)
Q Consensus 1219 VLtIhLkRFs~~~s-~~dIsk~l~si~~~-LDLs~~y~----gld~~~~Y~LvAVV~H~g---eGGHY~AyvR~~~~~g~ 1289 (1351)
||+||||||..... ..++ .+.+.||.. |||++|.. +..++.+|+|+|||+|.| ++|||+||+|+. .+|+
T Consensus 335 vLiihLKRF~~~~~~~~K~-~t~V~FP~~~LDm~~y~~~~~~~~~~~~~Y~L~avI~H~G~~~~sGHY~a~v~~~-~~~~ 412 (440)
T cd02669 335 YLIFHIKRFSKNNFFKEKN-PTIVNFPIKNLDLSDYVHFDKPSLNLSTKYNLVANIVHEGTPQEDGTWRVQLRHK-STNK 412 (440)
T ss_pred EEEEEEecccCCCCccccC-CCEEECCCCccchhhhhCccccccCCCceEEEEEEEEEeccCCCCeeEEEEEEcC-CCCe
Confidence 99999999975321 2222 355677775 79998753 223467999999999998 679999999975 6899
Q ss_pred EEEeeCCeeeEcCchhhhhhccCcccccccccccceEEEEEe
Q 000686 1290 YVQHSDSNVEAYSEVNILATDDNHSETLDMMISFQRLIGLKQ 1331 (1351)
Q Consensus 1290 Wy~FDDs~Vt~VssWe~Vlsk~~~s~~~p~vl~~QpYLLFYq 1331 (1351)
||.|||+.|+.++. +.|+. .++|||||+
T Consensus 413 W~~fdD~~V~~v~~-~~v~~-------------~eaYll~Y~ 440 (440)
T cd02669 413 WFEIQDLNVKEVLP-QLIFL-------------SESYIQIWE 440 (440)
T ss_pred EEEEECCeeeEcCH-HHhcc-------------CCceEEEeC
Confidence 99999999999974 66654 689999996
No 10
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.8e-43 Score=396.93 Aligned_cols=280 Identities=14% Similarity=0.161 Sum_probs=207.9
Q ss_pred ccccCCCChHHHHHHHHhhCcHHHHHHHhcCCCccccCC--CCchHHHHHHHHHHHhc----------------CCCCcC
Q 000686 1008 GLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKHD--GNPCIVCAFFDICAAKN----------------RGEAVD 1069 (1351)
Q Consensus 1008 GL~Nl~GTCYLNSILQ~L~hip~FRe~LLs~~~~~h~~~--~~pcV~caL~~LF~s~~----------------~~~~vs 1069 (1351)
||.|+||||||||+||||+|+|+||++|+.......... ...|+.|+|+++|..+. ...++.
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~ 80 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGIK 80 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccccC
Confidence 999997799999999999999999999987432111111 12389999999996543 134789
Q ss_pred hHHHHHHHHhhccCCccccccccccHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCccccccceeEEEeeeee
Q 000686 1070 PTELRIALSTYYCNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIE 1149 (1351)
Q Consensus 1070 P~~Lr~aL~k~~p~~~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~s~~eSE~~~~~~~~c~~~~cIVh~LFgG~L~s~I~ 1149 (1351)
|..|+.+++... +.|..+.|||||||+..||+.||.++.... ...+.++|+|.+.+.++
T Consensus 81 p~~~~~~l~~~~---~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~------------------~~~~~~~f~~~~~~~i~ 139 (311)
T cd02658 81 PSMFKALIGKGH---PEFSTMRQQDALEFLLHLIDKLDRESFKNL------------------GLNPNDLFKFMIEDRLE 139 (311)
T ss_pred cHHHHHHHhccC---hhhcccccccHHHHHHHHHHHHHHhhcccc------------------cCCchhheEEEeeEEEE
Confidence 999999998765 678889999999999999999998764211 23467999999999999
Q ss_pred ccCCCCccc-ccccceeeeecccchhhhhc---ccccccCHHHHHHHhcCCC--cccc-cCCCcce--EEEEEecCCceE
Q 000686 1150 CINCHMRSG-YQKCTYLSFGISANNLRSLK---NEHMDMSSKKVLELMGLGE--QMTC-GCGQLNS--IYHSLWRLPHVF 1220 (1351)
Q Consensus 1150 C~~Cg~~S~-~~~F~dLsl~I~a~slr~~k---~~~~~~SF~elLk~~~~~d--~~~C-~Cgkk~~--kq~~I~rlP~VL 1220 (1351)
|..|++++. ..+|.+++++|+........ ......++.++|+.+...+ .+.| .|++++. ++..|.++|+||
T Consensus 140 C~~C~~~s~~~e~~~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~~~C~~C~~~~~a~k~~~i~~lP~vL 219 (311)
T cd02658 140 CLSCKKVKYTSELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIEDFCSTCKEKTTATKTTGFKTFPDYL 219 (311)
T ss_pred cCCCCCEEEeecceeEEeeecccccccccccccccCCCCCHHHHHHHHcCcccccccccCCCCcccEEEEEEeecCCceE
Confidence 999998776 45788898888865321100 0112358999998754322 4568 8987764 677899999999
Q ss_pred EEEEEeecCCCccccccceeeccCccccccccccCCCCCceEEEEEEEEEeC---CCCeEEEEEEecC-CCCCEEEeeCC
Q 000686 1221 VSVIDWQRGDESSEDISTTLSALSNELDLSKLFQGYLPDYTYFVVSMVCFCK---DRQHSVCFLYDDQ-HDEHYVQHSDS 1296 (1351)
Q Consensus 1221 tIhLkRFs~~~s~~dIsk~l~si~~~LDLs~~y~gld~~~~Y~LvAVV~H~g---eGGHY~AyvR~~~-~~g~Wy~FDDs 1296 (1351)
+|||+||....... ..++...+.+|.++ .+..|+|+|||+|.| ++|||+||+|... .+|+||.|||+
T Consensus 220 ii~LkRF~~~~~~~-~~Ki~~~v~~p~~l--------~~~~Y~L~~vI~H~G~~~~~GHY~~~vk~~~~~~~~W~~fnD~ 290 (311)
T cd02658 220 VINMKRFQLLENWV-PKKLDVPIDVPEEL--------GPGKYELIAFISHKGTSVHSGHYVAHIKKEIDGEGKWVLFNDE 290 (311)
T ss_pred EEEeEEEEecCCCc-eEeeccccccCCcC--------CCCcEEEEEEEEccCCCCCCcceEEEEeCCCCCCCCEEEecCc
Confidence 99999997532111 11222233333333 346899999999998 5699999999630 13999999999
Q ss_pred eeeEcCchhhhhhccCcccccccccccceEEEEEe
Q 000686 1297 NVEAYSEVNILATDDNHSETLDMMISFQRLIGLKQ 1331 (1351)
Q Consensus 1297 ~Vt~VssWe~Vlsk~~~s~~~p~vl~~QpYLLFYq 1331 (1351)
.|+.++. ..|+ +.+||||||+
T Consensus 291 ~V~~~~~-~~~~-------------~~~~YilfY~ 311 (311)
T cd02658 291 KVVASQD-PPEM-------------KKLGYIYFYQ 311 (311)
T ss_pred eeEECCc-cccc-------------CCcceEEEEC
Confidence 9999986 3443 4689999996
No 11
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.6e-42 Score=398.52 Aligned_cols=269 Identities=16% Similarity=0.221 Sum_probs=202.1
Q ss_pred ccccCCCChHHHHHHHHhhCcHHHHHHHhcCCCccccCCCCchHHHHHHHHHHHhc--CCCCcChHH-HHHHHHhhccCC
Q 000686 1008 GLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKHDGNPCIVCAFFDICAAKN--RGEAVDPTE-LRIALSTYYCNQ 1084 (1351)
Q Consensus 1008 GL~Nl~GTCYLNSILQ~L~hip~FRe~LLs~~~~~h~~~~~pcV~caL~~LF~s~~--~~~~vsP~~-Lr~aL~k~~p~~ 1084 (1351)
||.|+|+||||||+||||+|+|+||+.+++...+ ......++.++|+.+|..+. .+.++.|.. +..++ . .
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~--~~~~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~l~~~---~--~ 73 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLP--RLGDSQSVMKKLQLLQAHLMHTQRRAEAPPDYFLEAS---R--P 73 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCcc--ccCCcchHHHHHHHHHHHHhhcCCcccCCHHHHHHHh---c--c
Confidence 8999977999999999999999999999997642 12234579999999998776 456677765 43332 2 2
Q ss_pred ccccccccccHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCccccccceeEEEeeeeeccCCCCcccc-cccc
Q 000686 1085 NNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRSGY-QKCT 1163 (1351)
Q Consensus 1085 ~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~s~~eSE~~~~~~~~c~~~~cIVh~LFgG~L~s~I~C~~Cg~~S~~-~~F~ 1163 (1351)
+.|..++|||||||+..||+.|| ++|.++|+|.+.++++|.+|+.++.+ .+|.
T Consensus 74 ~~f~~~~QqDa~EFl~~lLd~l~--------------------------~~i~~~F~G~~~~~i~C~~C~~~s~~~e~f~ 127 (327)
T cd02664 74 PWFTPGSQQDCSEYLRYLLDRLH--------------------------TLIEKMFGGKLSTTIRCLNCNSTSARTERFR 127 (327)
T ss_pred cccCCCCcCCHHHHHHHHHHHHH--------------------------HHHHhhCcEEeEeEEEcCCCCCEecccccce
Confidence 56888999999999999999998 24689999999999999999998874 4788
Q ss_pred eeeeecccchhhhhcccccccCHHHHHHHhc------CCCcccc-cCCCcce--EEEEEecCCceEEEEEEeecCCCccc
Q 000686 1164 YLSFGISANNLRSLKNEHMDMSSKKVLELMG------LGEQMTC-GCGQLNS--IYHSLWRLPHVFVSVIDWQRGDESSE 1234 (1351)
Q Consensus 1164 dLsl~I~a~slr~~k~~~~~~SF~elLk~~~------~~d~~~C-~Cgkk~~--kq~~I~rlP~VLtIhLkRFs~~~s~~ 1234 (1351)
.++++|+ ++.++|+.+. .++.|.| +|++.+. ++..|.++|+||+|||+||.......
T Consensus 128 ~l~L~i~--------------sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~ 193 (327)
T cd02664 128 DLDLSFP--------------SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKTH 193 (327)
T ss_pred eeecCCC--------------CHHHHHHHhcCeeEccCCCceeCCccCCccceeEEEEcccCChhhEEEeeeeEEccccC
Confidence 8887776 2344444432 2346999 9987653 67789999999999999996432211
Q ss_pred cccce--eeccCcccccccccc--------------------CCCCCceEEEEEEEEEeC---CCCeEEEEEEecCC---
Q 000686 1235 DISTT--LSALSNELDLSKLFQ--------------------GYLPDYTYFVVSMVCFCK---DRQHSVCFLYDDQH--- 1286 (1351)
Q Consensus 1235 dIsk~--l~si~~~LDLs~~y~--------------------gld~~~~Y~LvAVV~H~g---eGGHY~AyvR~~~~--- 1286 (1351)
...++ -+.||..|||..+.. +..++..|+|+|||+|.| ++|||+||+|.. .
T Consensus 194 ~~~Ki~~~v~fp~~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~Vi~H~G~~~~~GHY~a~~r~~-~~~~ 272 (327)
T cd02664 194 VREKIMDNVSINEVLSLPVRVESKSSESPLEKKEEESGDDGELVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQ-TDAD 272 (327)
T ss_pred cceecCceEecCCEEecCccccccccccccccccccccccccccCCCceEEEEEEEEEccCCCCCcceEEEEecC-Cccc
Confidence 11233 345666788875431 011356899999999998 579999999974 2
Q ss_pred -----------------CCCEEEeeCCeeeEcCchhhhhhccCcccccccccccceEEEEEe
Q 000686 1287 -----------------DEHYVQHSDSNVEAYSEVNILATDDNHSETLDMMISFQRLIGLKQ 1331 (1351)
Q Consensus 1287 -----------------~g~Wy~FDDs~Vt~VssWe~Vlsk~~~s~~~p~vl~~QpYLLFYq 1331 (1351)
.+.||.|||+.|+.|+ ++.|.+-- ..-....||||||+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~~~-~~~v~~~~------~~~~~~~aYlLfY~ 327 (327)
T cd02664 273 STGQECPEPKDAEENDESKNWYLFNDSRVTFSS-FESVQNVT------SRFPKDTPYILFYE 327 (327)
T ss_pred cccccccccccccccCCCCCEEEEeCCceEECC-HHHHHHhh------CCCCCCCEEEEEeC
Confidence 3899999999999996 57776410 01123689999995
No 12
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=8.8e-42 Score=393.60 Aligned_cols=280 Identities=15% Similarity=0.153 Sum_probs=204.6
Q ss_pred ccCcccccCCCChHHHHHHHHhhCcHHHHHHHhcCCCccccCCCCchHHHHHHHHHHH----hc-CCCCcChHHHHHHHH
Q 000686 1004 VLGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKHDGNPCIVCAFFDICAA----KN-RGEAVDPTELRIALS 1078 (1351)
Q Consensus 1004 ~~~~GL~Nl~GTCYLNSILQ~L~hip~FRe~LLs~~~~~h~~~~~pcV~caL~~LF~s----~~-~~~~vsP~~Lr~aL~ 1078 (1351)
.+.+||.|+|+||||||+||||+|+|.||+.+++.... . .....++.+|.. |. ......|..|..+++
T Consensus 22 ~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~------~-~~~~~~q~~~~~l~~~~~~~~~~~~P~~~~~~l~ 94 (332)
T cd02671 22 LPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSL------I-SSVEQLQSSFLLNPEKYNDELANQAPRRLLNALR 94 (332)
T ss_pred CCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhcc------c-CcHHHHHHHHHHHHHHHhhcccccCHHHHHHHHH
Confidence 37899999977999999999999999999998765311 0 112233333321 22 234457999999998
Q ss_pred hhccCCccccccccccHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCccccccceeEEEeeeeeccCCCCccc
Q 000686 1079 TYYCNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRSG 1158 (1351)
Q Consensus 1079 k~~p~~~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~s~~eSE~~~~~~~~c~~~~cIVh~LFgG~L~s~I~C~~Cg~~S~ 1158 (1351)
+.. +.|..+.||||||||..||+.||. +++++|+|.+.++++|.+|++.|.
T Consensus 95 ~~~---~~f~~~~QQDA~EFl~~LLd~L~~--------------------------~i~~~F~g~~~~~~~C~~C~~~s~ 145 (332)
T cd02671 95 EVN---PMYEGYLQHDAQEVLQCILGNIQE--------------------------LVEKDFQGQLVLRTRCLECETFTE 145 (332)
T ss_pred Hhc---cccCCccccCHHHHHHHHHHHHHH--------------------------HHHhhhceEEEEEEEeCCCCCeec
Confidence 765 678889999999999999999982 467899999999999999999988
Q ss_pred c-cccceeeeecccchhhhhcc--------cccccCHHHHHHHhc------CCCcccc-cCCCcce--EEEEEecCCceE
Q 000686 1159 Y-QKCTYLSFGISANNLRSLKN--------EHMDMSSKKVLELMG------LGEQMTC-GCGQLNS--IYHSLWRLPHVF 1220 (1351)
Q Consensus 1159 ~-~~F~dLsl~I~a~slr~~k~--------~~~~~SF~elLk~~~------~~d~~~C-~Cgkk~~--kq~~I~rlP~VL 1220 (1351)
+ ++|.+++++|+......... .....++.++|+.+. .++.|.| +|+..+. ++..|.++|+||
T Consensus 146 ~~E~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~a~k~~~~~~~P~vL 225 (332)
T cd02671 146 RREDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVI 225 (332)
T ss_pred eecccEEEEEEeCCCcccccccccccccccccccCCHHHHHHHhCCcceecCCCCeeCCCCCCceeEEEEEEEecCCCEE
Confidence 4 58999999998643211000 001247888887653 2347999 9988764 667899999999
Q ss_pred EEEEEeecCCCcc----ccccceeeccCcccccccc-ccCCCCCceEEEEEEEEEeC---CCCeEEEEEEecCCCCCEEE
Q 000686 1221 VSVIDWQRGDESS----EDISTTLSALSNELDLSKL-FQGYLPDYTYFVVSMVCFCK---DRQHSVCFLYDDQHDEHYVQ 1292 (1351)
Q Consensus 1221 tIhLkRFs~~~s~----~dIsk~l~si~~~LDLs~~-y~gld~~~~Y~LvAVV~H~g---eGGHY~AyvR~~~~~g~Wy~ 1292 (1351)
+|||+||...... ..+.++...+.+|++|+.. +.....+..|+|+|||+|.| ++|||+||+| ||.
T Consensus 226 ~i~LkRF~~~~~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~~~~~~~Y~L~~VI~H~G~~~~~GHY~a~vr-------W~~ 298 (332)
T cd02671 226 TIHLKCFAANGSEFDCYGGLSKVNTPLLTPLKLSLEEWSTKPKNDVYRLFAVVMHSGATISSGHYTAYVR-------WLL 298 (332)
T ss_pred EEEeeeeccccccccccCCceecCccccCccccccccccCCCCCCeEEEEEEEEEcCCCCCCCeEEEEEE-------EEE
Confidence 9999999853211 1234555556666665532 22223457999999999998 5799999998 999
Q ss_pred eeCCeeeEcCchhhhhhccCcccccccccccceEEEEEe
Q 000686 1293 HSDSNVEAYSEVNILATDDNHSETLDMMISFQRLIGLKQ 1331 (1351)
Q Consensus 1293 FDDs~Vt~VssWe~Vlsk~~~s~~~p~vl~~QpYLLFYq 1331 (1351)
|||+.|+.++ +++|.... ..+.....+||||||.
T Consensus 299 fdD~~V~~~~-~~~~~~~~----~~~~~~~~~aYiLfY~ 332 (332)
T cd02671 299 FDDSEVKVTE-EKDFLEAL----SPNTSSTSTPYLLFYK 332 (332)
T ss_pred EcCcceEEcc-HHHHHhhc----CCCCCCCCceEEEEEC
Confidence 9999999986 35665311 1113456899999995
No 13
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.1e-41 Score=380.76 Aligned_cols=240 Identities=19% Similarity=0.232 Sum_probs=189.9
Q ss_pred ccccCCCChHHHHHHHHhhCcHHHHHHHhcCCCccccCCCCchHHHHHHHHHHHhcCCCCcChHHHHHHHHhhccCCccc
Q 000686 1008 GLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKHDGNPCIVCAFFDICAAKNRGEAVDPTELRIALSTYYCNQNNF 1087 (1351)
Q Consensus 1008 GL~Nl~GTCYLNSILQ~L~hip~FRe~LLs~~~~~h~~~~~pcV~caL~~LF~s~~~~~~vsP~~Lr~aL~k~~p~~~~F 1087 (1351)
||.|+|+|||||||||||+|+|+||+++++ .|..|...+.... +.|
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~-------------------------------~P~~~~~~l~~~~---~~f 46 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE-------------------------------TPKELFSQVCRKA---PQF 46 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH-------------------------------CHHHHHHHHHHhh---Hhh
Confidence 999997799999999999999999999987 5666666666543 568
Q ss_pred cccccccHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCccccccceeEEEeeeeeccCCCCcccc-cccceee
Q 000686 1088 QEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRSGY-QKCTYLS 1166 (1351)
Q Consensus 1088 ~~g~QqDA~EFL~~LLd~LH~~l~~~~s~~eSE~~~~~~~~c~~~~cIVh~LFgG~L~s~I~C~~Cg~~S~~-~~F~dLs 1166 (1351)
..++||||+|||..||+.|| ++++++|+|++.++++|.+|++.|.. ++|.+++
T Consensus 47 ~~~~QqDA~Efl~~lld~l~--------------------------~~i~~~F~G~~~~~i~C~~C~~~s~~~E~f~~L~ 100 (279)
T cd02667 47 KGYQQQDSHELLRYLLDGLR--------------------------TFIDSIFGGELTSTIMCESCGTVSLVYEPFLDLS 100 (279)
T ss_pred cCCchhhHHHHHHHHHHHHH--------------------------HhhhhhcceEEEEEEEcCCCCCEeCccccceEEe
Confidence 88899999999999999998 24678999999999999999999874 5788877
Q ss_pred eecccchhhhhcccccccCHHHHHHHhc------CCCcccc-cCCCcceEEEEEecCCceEEEEEEeecCCCc--ccccc
Q 000686 1167 FGISANNLRSLKNEHMDMSSKKVLELMG------LGEQMTC-GCGQLNSIYHSLWRLPHVFVSVIDWQRGDES--SEDIS 1237 (1351)
Q Consensus 1167 l~I~a~slr~~k~~~~~~SF~elLk~~~------~~d~~~C-~Cgkk~~kq~~I~rlP~VLtIhLkRFs~~~s--~~dIs 1237 (1351)
++++... ....++.++|+.+. .++.|.| +|++ ..++..|.++|+||+|||+||..... ..++
T Consensus 101 Lp~~~~~-------~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~-a~k~~~i~~~P~~Lii~LkRF~~~~~~~~~Ki- 171 (279)
T cd02667 101 LPRSDEI-------KSECSIESCLKQFTEVEILEGNNKFACENCTK-AKKQYLISKLPPVLVIHLKRFQQPRSANLRKV- 171 (279)
T ss_pred cCCCccc-------CCCCCHHHHHHhhcCeeEecCCCcccCCccCc-eeeEeEhhhCCCeEEEEEeccccCcccCceec-
Confidence 7654311 12357888876643 2246899 9987 44677899999999999999975322 1222
Q ss_pred ceeeccCccccccccccC------CCCCceEEEEEEEEEeC--CCCeEEEEEEecCC---------------------CC
Q 000686 1238 TTLSALSNELDLSKLFQG------YLPDYTYFVVSMVCFCK--DRQHSVCFLYDDQH---------------------DE 1288 (1351)
Q Consensus 1238 k~l~si~~~LDLs~~y~g------ld~~~~Y~LvAVV~H~g--eGGHY~AyvR~~~~---------------------~g 1288 (1351)
...+.||..|||+++... ...+..|+|+|||+|.| ++|||+||+|.. . ++
T Consensus 172 ~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~GHY~a~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 250 (279)
T cd02667 172 SRHVSFPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTMRSGHYVAYVKVR-PPQQRLSDLTKSKPAADEAGPGSG 250 (279)
T ss_pred CceEeCCCccchhhccCccccccccCCCceEEEEEEEEEeCCCCCCEeEEEEEcC-ccccccccccccccccccCCCCCC
Confidence 233566778899887644 12356999999999998 789999999974 3 78
Q ss_pred CEEEeeCCeeeEcCchhhhhhccCcccccccccccceEEEEEe
Q 000686 1289 HYVQHSDSNVEAYSEVNILATDDNHSETLDMMISFQRLIGLKQ 1331 (1351)
Q Consensus 1289 ~Wy~FDDs~Vt~VssWe~Vlsk~~~s~~~p~vl~~QpYLLFYq 1331 (1351)
.||.|||+.|+.|+. +.|++ .+||||||+
T Consensus 251 ~W~~~dD~~V~~v~~-~~v~~-------------~~aYiLfYe 279 (279)
T cd02667 251 QWYYISDSDVREVSL-EEVLK-------------SEAYLLFYE 279 (279)
T ss_pred cEEEEECCccEECCH-HHhcc-------------CCcEEEEeC
Confidence 999999999999974 66654 479999995
No 14
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.9e-41 Score=383.42 Aligned_cols=296 Identities=15% Similarity=0.178 Sum_probs=216.0
Q ss_pred cCcccccCCCChHHHHHHHHhhCcHHHHHHHhcCCCccccCCCCchHHHHHHHHHHHhc--CCCCcChHHHHHHHHhhcc
Q 000686 1005 LGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKHDGNPCIVCAFFDICAAKN--RGEAVDPTELRIALSTYYC 1082 (1351)
Q Consensus 1005 ~~~GL~Nl~GTCYLNSILQ~L~hip~FRe~LLs~~~~~h~~~~~pcV~caL~~LF~s~~--~~~~vsP~~Lr~aL~k~~p 1082 (1351)
+.+||.|+||||||||+||||+|+|+||+++++... ........|+.|+|+.+|..+. ....+.|..+. .+....
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~-~~~~~~~~~~~~~l~~lf~~~~~~~~~~~~~~~~~-~~~~~~- 77 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPP-TEDDDDNKSVPLALQRLFLFLQLSESPVKTTELTD-KTRSFG- 77 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCC-cccCcccccHHHHHHHHHHHHHhCCccccCcchhh-eeccCC-
Confidence 358999997799999999999999999999998632 1223345589999999998765 33445554443 222221
Q ss_pred CCccccccccccHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCccccccceeEEEeeeeeccCCCCccc-ccc
Q 000686 1083 NQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRSG-YQK 1161 (1351)
Q Consensus 1083 ~~~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~s~~eSE~~~~~~~~c~~~~cIVh~LFgG~L~s~I~C~~Cg~~S~-~~~ 1161 (1351)
...|..+.||||+||+..||+.||..+.... ..+++.++|+|.+...++|..|+..+. ..+
T Consensus 78 -~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~-----------------~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~ 139 (334)
T cd02659 78 -WDSLNTFEQHDVQEFFRVLFDKLEEKLKGTG-----------------QEGLIKNLFGGKLVNYIICKECPHESEREEY 139 (334)
T ss_pred -CCCCCcccchhHHHHHHHHHHHHHHHhccCc-----------------ccchhhhhCceEEEeEEEecCCCceeccccc
Confidence 2456778999999999999999998765321 246789999999999999999998877 457
Q ss_pred cceeeeecccchhhhhcccccccCHHHHHHHhc------CCCcccc-cCCCcce--EEEEEecCCceEEEEEEeecCCCc
Q 000686 1162 CTYLSFGISANNLRSLKNEHMDMSSKKVLELMG------LGEQMTC-GCGQLNS--IYHSLWRLPHVFVSVIDWQRGDES 1232 (1351)
Q Consensus 1162 F~dLsl~I~a~slr~~k~~~~~~SF~elLk~~~------~~d~~~C-~Cgkk~~--kq~~I~rlP~VLtIhLkRFs~~~s 1232 (1351)
|.++.++++.. .++.++|+.+. ..+.|.| +|+++.. ++..|.++|+||+|||+||.....
T Consensus 140 f~~l~l~i~~~-----------~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~Rf~~~~~ 208 (334)
T cd02659 140 FLDLQVAVKGK-----------KNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFE 208 (334)
T ss_pred ceEEEEEcCCC-----------CCHHHHHHHhcCeeEecCCccEecCcCCCcccEEEEEEeecCCCEEEEEeeeeEEccc
Confidence 88888877641 23444444332 2346899 9988743 567899999999999999964211
Q ss_pred cccccc--eeeccCccccccccccCC------------CCCceEEEEEEEEEeC--CCCeEEEEEEecCCCCCEEEeeCC
Q 000686 1233 SEDIST--TLSALSNELDLSKLFQGY------------LPDYTYFVVSMVCFCK--DRQHSVCFLYDDQHDEHYVQHSDS 1296 (1351)
Q Consensus 1233 ~~dIsk--~l~si~~~LDLs~~y~gl------------d~~~~Y~LvAVV~H~g--eGGHY~AyvR~~~~~g~Wy~FDDs 1296 (1351)
.....+ ..+.|+..|||+++.... .....|+|+|||+|.| ++|||+||+|.. .+++||.|||+
T Consensus 209 ~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~vk~~-~~~~W~~~nD~ 287 (334)
T cd02659 209 TMMRIKINDRFEFPLELDMEPYTEKGLAKKEGDSEKKDSESYIYELHGVLVHSGDAHGGHYYSYIKDR-DDGKWYKFNDD 287 (334)
T ss_pred cCcceeCCceEeCCceecCccccccccccccccccccCCCCeeEEEEEEEEecCCCCCCCeEEEEECC-CCCceEEEeCc
Confidence 111112 235667788888764321 1246899999999998 689999999975 57999999999
Q ss_pred eeeEcCchhhhhhccCccccc---------ccccccceEEEEEecCC
Q 000686 1297 NVEAYSEVNILATDDNHSETL---------DMMISFQRLIGLKQDHD 1334 (1351)
Q Consensus 1297 ~Vt~VssWe~Vlsk~~~s~~~---------p~vl~~QpYLLFYq~~~ 1334 (1351)
.|+.++ ++.|+..|..-.-. +......||||||++.+
T Consensus 288 ~V~~i~-~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ay~l~Y~~~~ 333 (334)
T cd02659 288 VVTPFD-PNDAEEECFGGEETQKTYDSGPRAFKRTTNAYMLFYERKS 333 (334)
T ss_pred ccEECC-HHHHHHHcCCCccccccccccccccccccceEEEEEEEeC
Confidence 999996 58887655321111 12335779999999854
No 15
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-41 Score=395.80 Aligned_cols=315 Identities=17% Similarity=0.256 Sum_probs=244.3
Q ss_pred ccCcccCcccccCCCChHHHHHHHHhhCcHHHHHHHhcCCCccccCCCCc-----hHHHHHHHHHHHhc--CCCCcChHH
Q 000686 1000 LNVNVLGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKHDGNP-----CIVCAFFDICAAKN--RGEAVDPTE 1072 (1351)
Q Consensus 1000 ~g~~~~~~GL~Nl~GTCYLNSILQ~L~hip~FRe~LLs~~~~~h~~~~~p-----cV~caL~~LF~s~~--~~~~vsP~~ 1072 (1351)
....++.+||+|+||||||||.||||.|++.||+||++..+....+.++| .|+.++.+|+++.. ...+++|..
T Consensus 259 inke~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~haf~Ps~ 338 (823)
T COG5560 259 INKEAGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSG 338 (823)
T ss_pred HHhhccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccccccChHH
Confidence 33556778999998899999999999999999999999887555555555 67788888887644 778999999
Q ss_pred HHHHHHhhccCCccccccccccHHHHHHHHHHHHHHHhccCC-----CCC--CCcc------ccccccccC--CCccccc
Q 000686 1073 LRIALSTYYCNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVN-----SDD--KPED------MYKDRLHCV--DSNCLVH 1137 (1351)
Q Consensus 1073 Lr~aL~k~~p~~~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~-----s~~--eSE~------~~~~~~~c~--~~~cIVh 1137 (1351)
|+..+++++ ..|.+++|||.|||+.++||.||+++++.- +.+ -.++ ....+|... .+.+||.
T Consensus 339 fK~tIG~fn---~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiIt 415 (823)
T COG5560 339 FKKTIGSFN---EEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIIT 415 (823)
T ss_pred HHHHHhhhH---HHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHH
Confidence 999999986 679999999999999999999999998532 111 0011 122366543 4679999
Q ss_pred cceeEEEeeeeeccCCCCccccc-ccceeeeecccchh---------------------------hh-------------
Q 000686 1138 RIFGMDIFESIECINCHMRSGYQ-KCTYLSFGISANNL---------------------------RS------------- 1176 (1351)
Q Consensus 1138 ~LFgG~L~s~I~C~~Cg~~S~~~-~F~dLsl~I~a~sl---------------------------r~------------- 1176 (1351)
++|.|...++++|+.|+.+|.++ ||.++.+++|.+.. ++
T Consensus 416 dLFqgmyKSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~pl~iel~~sSt~~~lk~lv~~~~gk~g 495 (823)
T COG5560 416 DLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEYGKLG 495 (823)
T ss_pred HHHHHHhhceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCceEEEEeccchHHHHHHHHHHHhccCC
Confidence 99999999999999999999865 99999888776531 00
Q ss_pred --------------------------------------------------------------------------------
Q 000686 1177 -------------------------------------------------------------------------------- 1176 (1351)
Q Consensus 1177 -------------------------------------------------------------------------------- 1176 (1351)
T Consensus 496 c~ei~v~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~gYks~rlFg~pflqlnv~~~~~i~ 575 (823)
T COG5560 496 CFEIKVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKGYKSKRLFGDPFLQLNVLIKASIY 575 (823)
T ss_pred ccceeEEEEEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEeccccccccchhhhCCcceEEEeecchhhH
Confidence
Q ss_pred --h-------------------------------------------------c-----------------c---------
Q 000686 1177 --L-------------------------------------------------K-----------------N--------- 1179 (1351)
Q Consensus 1177 --~-------------------------------------------------k-----------------~--------- 1179 (1351)
+ + |
T Consensus 576 ~kLvkE~~ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~veeE~~~n~nd~vvi~cew~ek~y~~ 655 (823)
T COG5560 576 DKLVKEFEELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLS 655 (823)
T ss_pred HHHHHHHHHHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhhhhccCCCcceEEeeeccccchhh
Confidence 0 0 0
Q ss_pred c---------------ccccCHHHHHHHhc------CCCcccc-cCCCcc--eEEEEEecCCceEEEEEEeecCCCc-cc
Q 000686 1180 E---------------HMDMSSKKVLELMG------LGEQMTC-GCGQLN--SIYHSLWRLPHVFVSVIDWQRGDES-SE 1234 (1351)
Q Consensus 1180 ~---------------~~~~SF~elLk~~~------~~d~~~C-~Cgkk~--~kq~~I~rlP~VLtIhLkRFs~~~s-~~ 1234 (1351)
. ....++.+||..+. ..|.|+| +|+... +|++-|+++|.||+||||||++..+ ..
T Consensus 656 lFsy~~lw~~~ei~~~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~rsfrd 735 (823)
T COG5560 656 LFSYDPLWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRD 735 (823)
T ss_pred hhcCCccchhHHhhhccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhcccchh
Confidence 0 02345667766653 3468999 998765 4788899999999999999975332 34
Q ss_pred cccceeeccCc-ccccccc-ccCCCCCceEEEEEEEEEeC--CCCeEEEEEEecCCCCCEEEeeCCeeeEcCchhhhhhc
Q 000686 1235 DISTTLSALSN-ELDLSKL-FQGYLPDYTYFVVSMVCFCK--DRQHSVCFLYDDQHDEHYVQHSDSNVEAYSEVNILATD 1310 (1351)
Q Consensus 1235 dIsk~l~si~~-~LDLs~~-y~gld~~~~Y~LvAVV~H~g--eGGHY~AyvR~~~~~g~Wy~FDDs~Vt~VssWe~Vlsk 1310 (1351)
+| ..++.+|. .|||+.+ +.-.+|.-.|+|+||=+||| .|||||||+|+. .+|+||.|||++|++|++-+.|.
T Consensus 736 Ki-ddlVeyPiddldLs~~~~~~~~p~liydlyavDNHygglsgGHYtAyarn~-~n~~wy~fdDsritevdped~vt-- 811 (823)
T COG5560 736 KI-DDLVEYPIDDLDLSGVEYMVDDPRLIYDLYAVDNHYGGLSGGHYTAYARNF-ANNGWYLFDDSRITEVDPEDSVT-- 811 (823)
T ss_pred hh-hhhhccccccccccceEEeecCcceEEEeeeccccccccCCcceeeeeecc-cCCceEEecCccccccCcccccc--
Confidence 44 34556553 6888874 34455667899999999997 889999999987 88999999999999999855453
Q ss_pred cCcccccccccccceEEEEEecC
Q 000686 1311 DNHSETLDMMISFQRLIGLKQDH 1333 (1351)
Q Consensus 1311 ~~~s~~~p~vl~~QpYLLFYq~~ 1333 (1351)
..+|+|||.|.
T Consensus 812 ------------ssaYvLFyrrk 822 (823)
T COG5560 812 ------------SSAYVLFYRRK 822 (823)
T ss_pred ------------ceeEEEEEEec
Confidence 47999999984
No 16
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-38 Score=345.09 Aligned_cols=303 Identities=16% Similarity=0.180 Sum_probs=207.4
Q ss_pred cccCcccccCCCChHHHHHHHHhhCcHHHHHHHhcCCCcc----ccCCCCch-HHH-HHHHHHHHh-c-CCCCcChHHHH
Q 000686 1003 NVLGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEV----QKHDGNPC-IVC-AFFDICAAK-N-RGEAVDPTELR 1074 (1351)
Q Consensus 1003 ~~~~~GL~Nl~GTCYLNSILQ~L~hip~FRe~LLs~~~~~----h~~~~~pc-V~c-aL~~LF~s~-~-~~~~vsP~~Lr 1074 (1351)
+.++.||.|.|||||||++||||+.+..+...|+...+.. +...+.+- +.. .+..+..-. . ....|+|..|.
T Consensus 68 n~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~sis~~nF~ 147 (415)
T COG5533 68 NLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPKSISPRNFI 147 (415)
T ss_pred ccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCcccchHHHH
Confidence 4588999999889999999999999999999555544332 22223321 222 222222111 2 44569999999
Q ss_pred HHHHhhccCCccccccccccHHHHHHHHHHHHHHHhccCCCCC---C-C-------ccccc-----ccccc--CCCcccc
Q 000686 1075 IALSTYYCNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDD---K-P-------EDMYK-----DRLHC--VDSNCLV 1136 (1351)
Q Consensus 1075 ~aL~k~~p~~~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~s~~---e-S-------E~~~~-----~~~~c--~~~~cIV 1136 (1351)
..++... +.|...+|||+|||+.++||.||++++...+.. + + |.+.. -.|.. ..+.++|
T Consensus 148 ~i~~~~n---~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn~S~v 224 (415)
T COG5533 148 DILSGRN---KLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSLV 224 (415)
T ss_pred HHHcccc---ccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccchHHH
Confidence 9998775 679888999999999999999999998876421 1 1 11111 12332 2456999
Q ss_pred ccceeEEEeeeeeccCCCCccccc-ccceeeeecccchhhhhcccccccCHHHHHHHhcCCCcccc-cCCCcce--EEEE
Q 000686 1137 HRIFGMDIFESIECINCHMRSGYQ-KCTYLSFGISANNLRSLKNEHMDMSSKKVLELMGLGEQMTC-GCGQLNS--IYHS 1212 (1351)
Q Consensus 1137 h~LFgG~L~s~I~C~~Cg~~S~~~-~F~dLsl~I~a~slr~~k~~~~~~SF~elLk~~~~~d~~~C-~Cgkk~~--kq~~ 1212 (1351)
-.+|.|+..++.+|..|+++|++. +|+.+.++++-..-..+. .|. ..|.+..+. ...|+|.| +|+++.. |+..
T Consensus 225 ~~~f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v~~~~l~-eC~-~~f~~~e~L-~g~d~W~CpkC~~k~ss~K~~~ 301 (415)
T COG5533 225 AKTFFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQ-ECI-DRFYEEEKL-EGKDAWRCPKCGRKESSRKRME 301 (415)
T ss_pred HHHHhhhhhhhhhhhhcCCceeEEeccceeeeccchheeecHH-HHH-HHhhhHHhh-cCcccccCchhcccccchheEE
Confidence 999999999999999999999966 899998777643211110 000 122222221 34579999 9998864 7888
Q ss_pred EecCCceEEEEEEeecCCCccccccceeeccCcc----ccc------ccccc-CCC-CCceEEEEEEEEEeC--CCCeEE
Q 000686 1213 LWRLPHVFVSVIDWQRGDESSEDISTTLSALSNE----LDL------SKLFQ-GYL-PDYTYFVVSMVCFCK--DRQHSV 1278 (1351)
Q Consensus 1213 I~rlP~VLtIhLkRFs~~~s~~dIsk~l~si~~~----LDL------s~~y~-gld-~~~~Y~LvAVV~H~g--eGGHY~ 1278 (1351)
|.++|.+|+||++||.-..... +++++| .++ ...+. |.. ++.+|.|+|||||+| +||||+
T Consensus 302 I~~lP~~LII~i~RF~i~V~~~------~kiD~p~gw~~~~~~e~~v~~~f~~~~~~~P~~Y~L~gv~Ch~G~L~gGHY~ 375 (415)
T COG5533 302 ILVLPDVLIIHISRFHISVMGR------KKIDTPQGWKNTASVEVNVTLLFNNGIGYIPRKYSLLGVVCHNGTLNGGHYF 375 (415)
T ss_pred EEecCceEEEEeeeeeEEeecc------cccCCCcchhccCCceecccccccCCCCCCccceeEEEEEeecceecCceeE
Confidence 9999999999999997211100 112221 111 11121 111 457999999999999 999999
Q ss_pred EEEEecCCCCCEEEeeCCeeeEcCchhhhhhccCcccccccccccceEEEEEecC
Q 000686 1279 CFLYDDQHDEHYVQHSDSNVEAYSEVNILATDDNHSETLDMMISFQRLIGLKQDH 1333 (1351)
Q Consensus 1279 AyvR~~~~~g~Wy~FDDs~Vt~VssWe~Vlsk~~~s~~~p~vl~~QpYLLFYq~~ 1333 (1351)
++|+ .+|.|+.|||+.|+.++---+. . +-.+|||||++.
T Consensus 376 s~v~---~~~~W~~~dDs~vr~~~~~t~~--------~-----~pSsYilFY~r~ 414 (415)
T COG5533 376 SEVK---RSGTWNVYDDSQVRKGSRTTSG--------S-----HPSSYILFYTRS 414 (415)
T ss_pred Eeee---ecCceEEechhheeeccceecc--------c-----CCcceEEEEEec
Confidence 9999 7899999999999998731111 1 236799999973
No 17
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.1e-36 Score=336.13 Aligned_cols=213 Identities=20% Similarity=0.270 Sum_probs=168.0
Q ss_pred ccccCCCChHHHHHHHHhhCcHHHHHHHhcCCCccccCCCCchHHHHHHHHHHHhcCCCCcChHHHHHHHHhhccCCccc
Q 000686 1008 GLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKHDGNPCIVCAFFDICAAKNRGEAVDPTELRIALSTYYCNQNNF 1087 (1351)
Q Consensus 1008 GL~Nl~GTCYLNSILQ~L~hip~FRe~LLs~~~~~h~~~~~pcV~caL~~LF~s~~~~~~vsP~~Lr~aL~k~~p~~~~F 1087 (1351)
||.|+|+||||||+||+|+|+|+||+++....
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~------------------------------------------------ 32 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL------------------------------------------------ 32 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH------------------------------------------------
Confidence 89999779999999999999999999887631
Q ss_pred cccccccHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCccccccceeEEEeeeeeccCCCCccc--cccccee
Q 000686 1088 QEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRSG--YQKCTYL 1165 (1351)
Q Consensus 1088 ~~g~QqDA~EFL~~LLd~LH~~l~~~~s~~eSE~~~~~~~~c~~~~cIVh~LFgG~L~s~I~C~~Cg~~S~--~~~F~dL 1165 (1351)
+||||||||..||+.|+. .+.++|.|.+.+.++|..|++.+. .++|.++
T Consensus 33 ---~QqDa~EFl~~ll~~l~~--------------------------~i~~~F~g~~~~~i~C~~C~~~s~~~~e~f~~L 83 (240)
T cd02662 33 ---EQQDAHELFQVLLETLEQ--------------------------LLKFPFDGLLASRIVCLQCGESSKVRYESFTML 83 (240)
T ss_pred ---hhcCHHHHHHHHHHHHHH--------------------------hccCccccEEEEEEEeCCCCCccCcceeeeeee
Confidence 799999999999999982 246889999999999999999876 4689999
Q ss_pred eeecccchhhhhcccccccCHHHHHHHhcCC---Ccccc-cCCCcceEEEEEecCCceEEEEEEeecCCCccccccceee
Q 000686 1166 SFGISANNLRSLKNEHMDMSSKKVLELMGLG---EQMTC-GCGQLNSIYHSLWRLPHVFVSVIDWQRGDESSEDISTTLS 1241 (1351)
Q Consensus 1166 sl~I~a~slr~~k~~~~~~SF~elLk~~~~~---d~~~C-~Cgkk~~kq~~I~rlP~VLtIhLkRFs~~~s~~dIsk~l~ 1241 (1351)
+++|+.... ....++.++|+.+... +.+.| +| +..|.++|+||+|||+||..... ....|...
T Consensus 84 sL~ip~~~~------~~~~sl~~~L~~~~~~E~l~~~~C~~C------~~~i~~lP~vLii~LkRF~~~~~-~~~~K~~~ 150 (240)
T cd02662 84 SLPVPNQSS------GSGTTLEHCLDDFLSTEIIDDYKCDRC------QTVIVRLPQILCIHLSRSVFDGR-GTSTKNSC 150 (240)
T ss_pred EecccccCC------CCCCCHHHHHHHhcCcccccCcCCCCC------eEEeecCCcEEEEEEEEEEEcCC-Cceeeecc
Confidence 998886421 1124677777765422 25789 88 56799999999999999974322 22234444
Q ss_pred ccCccccccccccCCCCCceEEEEEEEEEeC--CCCeEEEEEEecC-------------------CCCCEEEeeCCeeeE
Q 000686 1242 ALSNELDLSKLFQGYLPDYTYFVVSMVCFCK--DRQHSVCFLYDDQ-------------------HDEHYVQHSDSNVEA 1300 (1351)
Q Consensus 1242 si~~~LDLs~~y~gld~~~~Y~LvAVV~H~g--eGGHY~AyvR~~~-------------------~~g~Wy~FDDs~Vt~ 1300 (1351)
.+.+|..| ++..|+|+|||+|.| ++|||+||+|.+. ..+.||.|||+.|+.
T Consensus 151 ~v~fp~~l--------~~~~Y~L~avi~H~G~~~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~ 222 (240)
T cd02662 151 KVSFPERL--------PKVLYRLRAVVVHYGSHSSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISDTTVKE 222 (240)
T ss_pred EEECCCcc--------CCceEEEEEEEEEeccCCCceEEEEEeCCCcccccccccccccccccCccCCCEEEEechheEE
Confidence 55555554 467999999999998 7899999999630 139999999999999
Q ss_pred cCchhhhhhccCcccccccccccceEEEEEe
Q 000686 1301 YSEVNILATDDNHSETLDMMISFQRLIGLKQ 1331 (1351)
Q Consensus 1301 VssWe~Vlsk~~~s~~~p~vl~~QpYLLFYq 1331 (1351)
|+. +.|+. .-+||||||+
T Consensus 223 v~~-~~v~~------------~~~aY~LfYe 240 (240)
T cd02662 223 VSE-SEVLE------------QKSAYMLFYE 240 (240)
T ss_pred eCH-HHHhh------------CCCEEEEEeC
Confidence 974 66632 2479999995
No 18
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=1.7e-35 Score=321.23 Aligned_cols=250 Identities=19% Similarity=0.279 Sum_probs=187.0
Q ss_pred CcccccCCCChHHHHHHHHhhCcHHHHHHHhcCCCc----c-ccCCCCchHHHHHHHHHHHhc----CCCCcChHHHHHH
Q 000686 1006 GTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDE----V-QKHDGNPCIVCAFFDICAAKN----RGEAVDPTELRIA 1076 (1351)
Q Consensus 1006 ~~GL~Nl~GTCYLNSILQ~L~hip~FRe~LLs~~~~----~-h~~~~~pcV~caL~~LF~s~~----~~~~vsP~~Lr~a 1076 (1351)
++||.|.||||||||+||+|+|+|+|++++++.... . .......+++++|+++|..+. ....+.|..|..+
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 589999977999999999999999999999986210 0 111223489999999997654 3578999999999
Q ss_pred HHhhccCCccccccccccHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCccccccceeEEEeeeeeccCCCCc
Q 000686 1077 LSTYYCNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMR 1156 (1351)
Q Consensus 1077 L~k~~p~~~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~s~~eSE~~~~~~~~c~~~~cIVh~LFgG~L~s~I~C~~Cg~~ 1156 (1351)
|.... +.|..+.||||+|||..||+.|+........ .... ........++++++|++++.+.+.|..|+..
T Consensus 81 l~~~~---~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~f~~~~~~~~~c~~c~~~ 151 (269)
T PF00443_consen 81 LSSIN---PSFSNGEQQDAHEFLSFLLDWLDEEFNSSFK-----RKSW-KNTNSSEDSLISDLFGGQFESSIKCSSCKNS 151 (269)
T ss_dssp HHHHC---GGGGSSSTEEHHHHHHHHHHHHHHHHTSCSS-----HHHH-HHHHCCEESHHHHHH-EEEEEEEEETTTTCE
T ss_pred ccccc---cccccccccchhhhhcccccccchhhccccc-----cccc-ccccccccccccccccccccccccccccccc
Confidence 99876 4488899999999999999999998765321 0000 0011234688899999999999999999875
Q ss_pred ccccccceeeeecccchhhhhcccccccCHHHHHHHhcCCCcccccCCCcceEEEEEecCCceEEEEEEee--cCCC-cc
Q 000686 1157 SGYQKCTYLSFGISANNLRSLKNEHMDMSSKKVLELMGLGEQMTCGCGQLNSIYHSLWRLPHVFVSVIDWQ--RGDE-SS 1233 (1351)
Q Consensus 1157 S~~~~F~dLsl~I~a~slr~~k~~~~~~SF~elLk~~~~~d~~~C~Cgkk~~kq~~I~rlP~VLtIhLkRF--s~~~-s~ 1233 (1351)
+..|.++|+||+|+|+|| .... ..
T Consensus 152 -----------------------------------------------------~~~~~~~P~~L~i~l~R~~~~~~~~~~ 178 (269)
T PF00443_consen 152 -----------------------------------------------------QSSISSLPPILIIQLKRFEFDQETGRS 178 (269)
T ss_dssp -----------------------------------------------------EEEEEEBBSEEEEEEE-EEEESTSSEE
T ss_pred -----------------------------------------------------ccccccccceeeeccccceeccccccc
Confidence 456899999999999998 3211 12
Q ss_pred ccccceeeccC-ccccccccccCCCC----CceEEEEEEEEEeC--CCCeEEEEEEecCCCCCEEEeeCCeeeEcCchhh
Q 000686 1234 EDISTTLSALS-NELDLSKLFQGYLP----DYTYFVVSMVCFCK--DRQHSVCFLYDDQHDEHYVQHSDSNVEAYSEVNI 1306 (1351)
Q Consensus 1234 ~dIsk~l~si~-~~LDLs~~y~gld~----~~~Y~LvAVV~H~g--eGGHY~AyvR~~~~~g~Wy~FDDs~Vt~VssWe~ 1306 (1351)
.++ .....++ ..|||+.++..... ...|+|+|||+|.| ++|||+||+|+. ..++|+.|||+.|+.++ |+.
T Consensus 179 ~K~-~~~v~~~~~~l~l~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~a~v~~~-~~~~W~~~dD~~v~~~~-~~~ 255 (269)
T PF00443_consen 179 KKI-NNPVEFPLEELDLSPYLEKNNSECQSNVKYRLVAVIVHYGSADSGHYVAYVRDS-DDGKWYKFDDSRVTEVS-WEE 255 (269)
T ss_dssp EE---CEEB--SSEEEGGGGBSSCCCTHTSSSEEEEEEEEEEESSTTSEEEEEEEEET-TTTEEEEEETTEEEEES-HHH
T ss_pred ccc-ccccccCchhhhhhhhhccccccccccceeeehhhhccccccccceEEEeeccc-cCCeEEEeeCCceEECC-HHH
Confidence 222 2335667 57999976643332 47999999999998 789999999986 55679999999999996 588
Q ss_pred hhhccCcccccccccccceEEEEE
Q 000686 1307 LATDDNHSETLDMMISFQRLIGLK 1330 (1351)
Q Consensus 1307 Vlsk~~~s~~~p~vl~~QpYLLFY 1330 (1351)
|+..+ ...||||||
T Consensus 256 v~~~~----------~~~~yll~Y 269 (269)
T PF00443_consen 256 VIKSS----------NSTAYLLFY 269 (269)
T ss_dssp HCCGG----------STCEEEEEE
T ss_pred Hhhcc----------CCceEEEeC
Confidence 87522 468999999
No 19
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-35 Score=353.37 Aligned_cols=309 Identities=18% Similarity=0.198 Sum_probs=219.8
Q ss_pred ccCcccccCCCChHHHHHHHHhhCcHHHHHHHhcCCCccccCC----CCchHHHHHHHHH-HHhc--CCCCcChHHHHHH
Q 000686 1004 VLGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKHD----GNPCIVCAFFDIC-AAKN--RGEAVDPTELRIA 1076 (1351)
Q Consensus 1004 ~~~~GL~Nl~GTCYLNSILQ~L~hip~FRe~LLs~~~~~h~~~----~~pcV~caL~~LF-~s~~--~~~~vsP~~Lr~a 1076 (1351)
.+.+||.|+|+|||||+|||||+.++.||+.|++..+...... ..--+..++..++ ..+. ....+.|..|...
T Consensus 299 ~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~~~s~~P~~f~~~ 378 (653)
T KOG1868|consen 299 FGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHGQFSVLPRRFIRV 378 (653)
T ss_pred cCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCCceecCcHHHHHH
Confidence 3679999997799999999999999999999998765433331 1112344444444 3333 5667889999999
Q ss_pred HHhhccCCccccccccccHHHHHHHHHHHHHHHhccCCCC----CCC-------cccc-----ccccccC--CCcccccc
Q 000686 1077 LSTYYCNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSD----DKP-------EDMY-----KDRLHCV--DSNCLVHR 1138 (1351)
Q Consensus 1077 L~k~~p~~~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~s~----~eS-------E~~~-----~~~~~c~--~~~cIVh~ 1138 (1351)
+.++. +.|..+.|||||||+..+++.||++++..... +.. +... ...|.-. .....|.+
T Consensus 379 ~~~y~---~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i~~ 455 (653)
T KOG1868|consen 379 LKRYS---PNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKIGD 455 (653)
T ss_pred Hhhcc---cccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHHHH
Confidence 99886 56766789999999999999999999875320 000 0000 0122211 23455889
Q ss_pred ceeEEEeeeeeccCCCCcccc-cccceeeeecccchhhhhcccccccCHHHHHHHhc------CCCcccc-cCCCcce--
Q 000686 1139 IFGMDIFESIECINCHMRSGY-QKCTYLSFGISANNLRSLKNEHMDMSSKKVLELMG------LGEQMTC-GCGQLNS-- 1208 (1351)
Q Consensus 1139 LFgG~L~s~I~C~~Cg~~S~~-~~F~dLsl~I~a~slr~~k~~~~~~SF~elLk~~~------~~d~~~C-~Cgkk~~-- 1208 (1351)
+|.|++.+.++|..||+.|.+ .+|++++++|+....... ..++.+|++.+. .++.|.| .|+....
T Consensus 456 lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~~~-----~~~L~~C~~~ft~~ekle~~~~w~Cp~c~~~~~~~ 530 (653)
T KOG1868|consen 456 LFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFAGG-----KVSLEDCLSLFTKEEKLEGDEAWLCPRCKHKESSK 530 (653)
T ss_pred HHHHHHHhheehhhcCCcceeeecceeeEEeccccccccc-----ccchHhhhccccchhhcccccccCCccccCccccc
Confidence 999999999999999999985 489999999987543321 234666665543 3568999 9987652
Q ss_pred --EEEEEecCCceEEEEEEeecCCCccccccceeeccCcc---ccccccccC-CCCCceEEEEEEEEEeC--CCCeEEEE
Q 000686 1209 --IYHSLWRLPHVFVSVIDWQRGDESSEDISTTLSALSNE---LDLSKLFQG-YLPDYTYFVVSMVCFCK--DRQHSVCF 1280 (1351)
Q Consensus 1209 --kq~~I~rlP~VLtIhLkRFs~~~s~~dIsk~l~si~~~---LDLs~~y~g-ld~~~~Y~LvAVV~H~g--eGGHY~Ay 1280 (1351)
|+.+|.++|+||++||+||...... ..+....++++ .|+.+.+.. ......|.|+|||||+| +|||||||
T Consensus 531 ~lK~~~i~~lp~iLiihL~Rf~~~~~~--~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~Gtl~sGHYta~ 608 (653)
T KOG1868|consen 531 TLKKLTILRLPKILIIHLKRFSSDGNS--FNKLSTGVDFPLREADLSPRFAEKGNNPKSYRLYAVVNHSGTLNSGHYTAY 608 (653)
T ss_pred ccceeeeecCCHHHHHHHHHhccCccc--ccccceeeccchHhhhhchhccccCCCccceeeEEEEeccCcccCCceEEE
Confidence 5678999999999999999864311 11222333343 234432222 22234699999999999 89999999
Q ss_pred EEecCCCCCEEEeeCCeeeEcCchhhhhhccCcccccccccccceEEEEEecCCCCc
Q 000686 1281 LYDDQHDEHYVQHSDSNVEAYSEVNILATDDNHSETLDMMISFQRLIGLKQDHDGSR 1337 (1351)
Q Consensus 1281 vR~~~~~g~Wy~FDDs~Vt~VssWe~Vlsk~~~s~~~p~vl~~QpYLLFYq~~~~tp 1337 (1351)
|+.. ..+.|+.|||+.|+.++. .+| ....+|||||.+.+..+
T Consensus 609 ~~~~-~~~~W~~fdDs~Vs~~~~-~~~-------------~~s~aYIlFY~~~~~~~ 650 (653)
T KOG1868|consen 609 VYKN-EKQRWFTFDDSEVSPISE-TDV-------------GSSSAYILFYERLGIFE 650 (653)
T ss_pred Eeec-CCCceEEecCeeeecccc-ccc-------------cCCCceEEEeecCCccc
Confidence 9865 679999999999997764 333 24689999999987654
No 20
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.1e-33 Score=303.29 Aligned_cols=214 Identities=21% Similarity=0.332 Sum_probs=166.1
Q ss_pred ccccCCCChHHHHHHHHhhCcHHHHHHHhcCCCccccCCCCchHHHHHHHHHHHhcCCCCcChHHHHHHHHhhccCCccc
Q 000686 1008 GLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKHDGNPCIVCAFFDICAAKNRGEAVDPTELRIALSTYYCNQNNF 1087 (1351)
Q Consensus 1008 GL~Nl~GTCYLNSILQ~L~hip~FRe~LLs~~~~~h~~~~~pcV~caL~~LF~s~~~~~~vsP~~Lr~aL~k~~p~~~~F 1087 (1351)
||.|.||||||||+||||++
T Consensus 1 gl~n~~~~cy~n~~~Q~l~~------------------------------------------------------------ 20 (230)
T cd02674 1 GLRNLGNTCYMNSILQCLSA------------------------------------------------------------ 20 (230)
T ss_pred CccccCcchhhhHHHHHHHH------------------------------------------------------------
Confidence 89999779999999999999
Q ss_pred cccccccHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCccccccceeEEEeeeeeccCCCCcccc-cccceee
Q 000686 1088 QEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRSGY-QKCTYLS 1166 (1351)
Q Consensus 1088 ~~g~QqDA~EFL~~LLd~LH~~l~~~~s~~eSE~~~~~~~~c~~~~cIVh~LFgG~L~s~I~C~~Cg~~S~~-~~F~dLs 1166 (1351)
.||||+||+..||+.|| +++.++|+|.+.++++|..|+..+.. .+|..+.
T Consensus 21 ---~QqDa~Ef~~~ll~~l~--------------------------~~i~~~F~~~~~~~~~C~~C~~~~~~~e~~~~l~ 71 (230)
T cd02674 21 ---DQQDAQEFLLFLLDGLH--------------------------SIIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLS 71 (230)
T ss_pred ---hhhhHHHHHHHHHHHHh--------------------------hhHHheeCCEEeCcEEcCCCcCCcceecceeEEE
Confidence 68999999999999998 13678999999999999999998874 5899999
Q ss_pred eecccchhhhhcccccccCHHHHHHHhc------CCCcccc-cCCCcce--EEEEEecCCceEEEEEEeecCCCc-cccc
Q 000686 1167 FGISANNLRSLKNEHMDMSSKKVLELMG------LGEQMTC-GCGQLNS--IYHSLWRLPHVFVSVIDWQRGDES-SEDI 1236 (1351)
Q Consensus 1167 l~I~a~slr~~k~~~~~~SF~elLk~~~------~~d~~~C-~Cgkk~~--kq~~I~rlP~VLtIhLkRFs~~~s-~~dI 1236 (1351)
++|+..... ....++.++|+... ..+.+.| +|+.... ++..|.++|+||+|||+||..... ..++
T Consensus 72 l~ip~~~~~-----~~~~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~~~~~K~ 146 (230)
T cd02674 72 LPIPSGSGD-----APKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKL 146 (230)
T ss_pred EecccccCC-----CCCCCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecCCCCcccC
Confidence 988864311 12357888886532 1236889 8987764 566799999999999999975321 1111
Q ss_pred cceeeccCc-cccccccccC--CCCCceEEEEEEEEEeC--CCCeEEEEEEecCCCCCEEEeeCCeeeEcCchhhhhhcc
Q 000686 1237 STTLSALSN-ELDLSKLFQG--YLPDYTYFVVSMVCFCK--DRQHSVCFLYDDQHDEHYVQHSDSNVEAYSEVNILATDD 1311 (1351)
Q Consensus 1237 sk~l~si~~-~LDLs~~y~g--ld~~~~Y~LvAVV~H~g--eGGHY~AyvR~~~~~g~Wy~FDDs~Vt~VssWe~Vlsk~ 1311 (1351)
...+.++. .||++++... .....+|+|+|||+|.| ++|||+||+|.. .+++||.|||+.|+.|+.++ |.
T Consensus 147 -~~~v~~~~~~l~l~~~~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~-~~~~W~~fnD~~V~~i~~~~-~~--- 220 (230)
T cd02674 147 -TTPVTFPLNDLDLTPYVDTRSFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNN-ETNDWYKFDDSRVTKVSESS-VV--- 220 (230)
T ss_pred -CceEeccccccccccccCcccCCCCceEEEEEEEEeeCCCCCcEEEEEEECC-CCCceEEEcCCeEEEcCHHH-cc---
Confidence 12344553 4777765322 23456899999999998 679999999975 45999999999999998643 42
Q ss_pred CcccccccccccceEEEEEe
Q 000686 1312 NHSETLDMMISFQRLIGLKQ 1331 (1351)
Q Consensus 1312 ~~s~~~p~vl~~QpYLLFYq 1331 (1351)
..+||||||+
T Consensus 221 ----------~~~~YlL~Y~ 230 (230)
T cd02674 221 ----------SSSAYILFYE 230 (230)
T ss_pred ----------CCCceEEEeC
Confidence 3689999996
No 21
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.1e-33 Score=325.01 Aligned_cols=283 Identities=11% Similarity=0.076 Sum_probs=191.2
Q ss_pred CcccccCCCChHHHHHHHHhhCcHHHHHHHhcCCCccc----------cCCC----------CchHHHHHHHHHHHhc--
Q 000686 1006 GTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQ----------KHDG----------NPCIVCAFFDICAAKN-- 1063 (1351)
Q Consensus 1006 ~~GL~Nl~GTCYLNSILQ~L~hip~FRe~LLs~~~~~h----------~~~~----------~pcV~caL~~LF~s~~-- 1063 (1351)
|+||.|+||||||||+||+|+++|+||+++++...... ...+ ..+++++|+.||..+.
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 68999997799999999999999999999998652100 0000 1268999999998765
Q ss_pred CCCCcChHHHHHHHHhhccCCccccccccccHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCccccccceeEE
Q 000686 1064 RGEAVDPTELRIALSTYYCNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMD 1143 (1351)
Q Consensus 1064 ~~~~vsP~~Lr~aL~k~~p~~~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~s~~eSE~~~~~~~~c~~~~cIVh~LFgG~ 1143 (1351)
...++.|..+...+. | .||||+||+..+|+.||..+........ +.. ...-....++|+++|+|+
T Consensus 81 ~~~~v~P~~~l~~l~--------~---~QQDa~Ef~~~lld~Le~~lk~~~~~~~-~~~---~~~~~~~~~~I~~lF~G~ 145 (343)
T cd02666 81 NTRSVTPSKELAYLA--------L---RQQDVTECIDNVLFQLEVALEPISNAFA-GPD---TEDDKEQSDLIKRLFSGK 145 (343)
T ss_pred CCCccCcHHHHHhcc--------c---cccchHHHHHHHHHHHHHHhcCcccccc-Ccc---cccccchhhhhhHhceee
Confidence 558899998755442 2 7999999999999999999875431000 000 000113478999999999
Q ss_pred EeeeeeccCCC---Cccc-ccccceeeeecccchhhhhcccccccCHHHHHHHhcCCCcccccCCCcceEEEEEecCCce
Q 000686 1144 IFESIECINCH---MRSG-YQKCTYLSFGISANNLRSLKNEHMDMSSKKVLELMGLGEQMTCGCGQLNSIYHSLWRLPHV 1219 (1351)
Q Consensus 1144 L~s~I~C~~Cg---~~S~-~~~F~dLsl~I~a~slr~~k~~~~~~SF~elLk~~~~~d~~~C~Cgkk~~kq~~I~rlP~V 1219 (1351)
+.+.++|..|+ ..+. .++|.++.++|........ ......++.++|+.+...+. |.++|+|
T Consensus 146 ~~~~i~c~~~~~~~~~s~~~E~F~~L~l~I~~~~~~~~-~~~~~~~L~d~L~~~~~~e~--------------~~~~P~v 210 (343)
T cd02666 146 TKQQLVPESMGNQPSVRTKTERFLSLLVDVGKKGREIV-VLLEPKDLYDALDRYFDYDS--------------LTKLPQR 210 (343)
T ss_pred EEEEEEecccCCCCCCccccceeEEEEEecCccccccc-ccCCCCCHHHHHHHhcChhh--------------hccCCHH
Confidence 99999999997 5555 5689999998875211000 00112467777765422111 8999999
Q ss_pred EEEEEEeecCCCccccccceee--ccCccccccc------------------------------cccCCCCCceEEEEEE
Q 000686 1220 FVSVIDWQRGDESSEDISTTLS--ALSNELDLSK------------------------------LFQGYLPDYTYFVVSM 1267 (1351)
Q Consensus 1220 LtIhLkRFs~~~s~~dIsk~l~--si~~~LDLs~------------------------------~y~gld~~~~Y~LvAV 1267 (1351)
|.|||+. ........| .+. .++..+|..+ .|... .+..|.|+||
T Consensus 211 l~~qlq~-~~~~~~~~~--~~dry~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~Y~L~av 286 (343)
T cd02666 211 SQVQAQL-AQPLQRELI--SMDRYELPSSIDDIDELIREAIQSESSLVRQAQNELAELKHEIEKQFDDL-KSYGYRLHAV 286 (343)
T ss_pred HHHHHhh-cccccchhe--eeccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CCCceEEEEE
Confidence 9999871 110110000 111 1111111111 11111 3568999999
Q ss_pred EEEeC--CCCeEEEEEEecCCCCCEEEeeCCeeeEcCchhhhhhccCcccccccccccceEEEEEe
Q 000686 1268 VCFCK--DRQHSVCFLYDDQHDEHYVQHSDSNVEAYSEVNILATDDNHSETLDMMISFQRLIGLKQ 1331 (1351)
Q Consensus 1268 V~H~g--eGGHY~AyvR~~~~~g~Wy~FDDs~Vt~VssWe~Vlsk~~~s~~~p~vl~~QpYLLFYq 1331 (1351)
|+|.| ++|||++|+|+. .++.||.|||..|+.+.. +.|+... .-..-.||+|+|.
T Consensus 287 v~H~G~~~~GHY~~~~~~~-~~~~W~~~dD~~V~~v~~-~ev~~~~-------~~~~~~pY~l~Yv 343 (343)
T cd02666 287 FIHRGEASSGHYWVYIKDF-EENVWRKYNDETVTVVPA-SEVFLFT-------LGNTATPYFLVYV 343 (343)
T ss_pred EEeecCCCCCeEEEEEEEC-CCCeEEEEECCeeEEecH-HHHhhcc-------cCCCCCCEEEEeC
Confidence 99998 789999999986 679999999999999986 4555432 2234689999994
No 22
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-32 Score=330.36 Aligned_cols=306 Identities=18% Similarity=0.252 Sum_probs=229.3
Q ss_pred CcccCcccccCCCChHHHHHHHHhhCcHHHHHHHhcCCCccc-cCCCCchHHHHHHHHHHH-hc-C-CCCcChHHHHHHH
Q 000686 1002 VNVLGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQ-KHDGNPCIVCAFFDICAA-KN-R-GEAVDPTELRIAL 1077 (1351)
Q Consensus 1002 ~~~~~~GL~Nl~GTCYLNSILQ~L~hip~FRe~LLs~~~~~h-~~~~~pcV~caL~~LF~s-~~-~-~~~vsP~~Lr~aL 1077 (1351)
.....+||.|+|+|||||+|+|+|.|.+..+..++...+... .+.+.-|+.|++.++|.. |+ . +.++.|..+.+.+
T Consensus 157 ~~~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~~~l~~~ 236 (492)
T KOG1867|consen 157 TALGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEPSSSGSSCLVCDLDRLFQALYSGHNRTPYSPFELLNLV 236 (492)
T ss_pred eeecccccccccHHHHHHHHHHHhhccchhhccchhhhcccCCCCCCCcchhhhhhhhhhHhhcCCCCCCcChHHHHHHH
Confidence 345779999996699999999999999999999998876411 222345999999999965 55 5 8899999998888
Q ss_pred HhhccCCccccccccccHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCccccccceeEEEeeeeeccCCCCcc
Q 000686 1078 STYYCNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRS 1157 (1351)
Q Consensus 1078 ~k~~p~~~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~s~~eSE~~~~~~~~c~~~~cIVh~LFgG~L~s~I~C~~Cg~~S 1157 (1351)
++.. +.|+++.|||||||+..+++.+|.+. ... ++.+......-.| .|+++..|.|.+.++++|..|+..|
T Consensus 237 ~k~~---~~~~g~~Qqda~eF~~~~~~~~~~~~-~~~--~k~~~~~~~~~~c---~~iv~~~F~G~L~~~v~c~~c~~~S 307 (492)
T KOG1867|consen 237 WKHS---PNLAGYEQQDAHEFLIALLDRLHREK-DDC--GKSLIASQSNKQC---PCIVHTIFSGTLQSDVTCQTCGSKS 307 (492)
T ss_pred HHhC---cccccccccchHHHHHHhcccccccc-ccc--ccccccccCCccc---ccccceeecceeccceeehhhccee
Confidence 7765 67888999999999999999999987 111 0111111001123 7999999999999999999999999
Q ss_pred c-ccccceeeeecccchhhhhcccccccCHHHHHHHhc------CCCcccc-cCCCcce--EEEEEecCCceEEEEEEee
Q 000686 1158 G-YQKCTYLSFGISANNLRSLKNEHMDMSSKKVLELMG------LGEQMTC-GCGQLNS--IYHSLWRLPHVFVSVIDWQ 1227 (1351)
Q Consensus 1158 ~-~~~F~dLsl~I~a~slr~~k~~~~~~SF~elLk~~~------~~d~~~C-~Cgkk~~--kq~~I~rlP~VLtIhLkRF 1227 (1351)
+ +.||.+++++|+......... .....+.+++..+. ....+.| .|+.++. ++..|.++|.|+++||+||
T Consensus 308 ~~~dpf~disL~i~~~~~~~~~~-~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kql~~~~lP~~l~~~lkRf 386 (492)
T KOG1867|consen 308 TTYDPFMDISLDIPDQFTSSSVR-SPELTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQLTIRKLPAVLCLHLKRF 386 (492)
T ss_pred eeccCccceeeecchhccCcccc-cchhhhhhhhhhhhhhhhcCcccccccCCcccccccccccccccCCceeeeeeccc
Confidence 7 459999999998642211110 00122333333321 2347788 8988763 7889999999999999999
Q ss_pred cCCCcccc-ccceeeccCccccccccccC-----CC-CCceEEEEEEEEEeC--CCCeEEEEEEecCCCCCEEEeeCCee
Q 000686 1228 RGDESSED-ISTTLSALSNELDLSKLFQG-----YL-PDYTYFVVSMVCFCK--DRQHSVCFLYDDQHDEHYVQHSDSNV 1298 (1351)
Q Consensus 1228 s~~~s~~d-Isk~l~si~~~LDLs~~y~g-----ld-~~~~Y~LvAVV~H~g--eGGHY~AyvR~~~~~g~Wy~FDDs~V 1298 (1351)
........ .....+.+|..|++.+|+.. .+ +...|+|.|||+|+| ++|||+||.| ..+.||.|||+.|
T Consensus 387 e~~~~~~~~ki~~~v~fp~~l~m~p~~~~~~~~~~~~~~~~Y~L~AVV~H~G~~~SGHY~aY~r---~~~~~~~~dDs~v 463 (492)
T KOG1867|consen 387 EHSATGAREKIDSYVSFPVLLNMKPYCSSEKLKSQDNPDHLYELRAVVVHHGTVGSGHYVAYRR---QSGGWFKCDDSTV 463 (492)
T ss_pred cccccccccccCcccccchhhcCCccccccccccCCCCCceEEEEEEEEeccCCCCCceEEEEE---eCCCcEEEcCeEE
Confidence 64333222 12456778888999987642 11 357899999999998 7899999999 6899999999999
Q ss_pred eEcCchhhhhhccCcccccccccccceEEEEEecCC
Q 000686 1299 EAYSEVNILATDDNHSETLDMMISFQRLIGLKQDHD 1334 (1351)
Q Consensus 1299 t~VssWe~Vlsk~~~s~~~p~vl~~QpYLLFYq~~~ 1334 (1351)
+.++. +.|+. .++|+|||....
T Consensus 464 ~~~s~-~eVl~-------------~~aylLFY~~~~ 485 (492)
T KOG1867|consen 464 TKVSE-EEVLS-------------SQAYLLFYTQEQ 485 (492)
T ss_pred EEeeH-HHhhh-------------chhhheehhHHh
Confidence 99874 66654 789999998653
No 23
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.98 E-value=9.8e-32 Score=298.40 Aligned_cols=211 Identities=15% Similarity=0.197 Sum_probs=146.8
Q ss_pred ccccccccccHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCccccccceeEEEeeeeeccCCCCcccc-cccc
Q 000686 1085 NNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRSGY-QKCT 1163 (1351)
Q Consensus 1085 ~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~s~~eSE~~~~~~~~c~~~~cIVh~LFgG~L~s~I~C~~Cg~~S~~-~~F~ 1163 (1351)
+.|..++||||||||..||+.||+.+........+. .. ....+...++|+|++.++++|..|+++|.+ .+|.
T Consensus 26 ~~F~~~~QQDAhEFL~~LLd~l~~~~~~~~~~~~~~------~~-~~~~~~~~~~F~~~l~s~i~C~~C~~~s~~~e~~~ 98 (245)
T cd02673 26 TEFDNDDQQDAHEFLLTLLEAIDDIMQVNRTNVPPS------NI-EIKRLNPLEAFKYTIESSYVCIGCSFEENVSDVGN 98 (245)
T ss_pred hhcCCCchhhHHHHHHHHHHHHHHHHHhhcccCCCC------cc-cccccCHhHheeeEEEeEEEecCCCCeeeeccccc
Confidence 457789999999999999999998764432100000 00 001223468999999999999999999875 4788
Q ss_pred eeeeecccchhhhhcccccccCHHHHHHHhcC--CCcccc-cCCCcce-EEEEEecCCceEEEEEEeecCCCccccccce
Q 000686 1164 YLSFGISANNLRSLKNEHMDMSSKKVLELMGL--GEQMTC-GCGQLNS-IYHSLWRLPHVFVSVIDWQRGDESSEDISTT 1239 (1351)
Q Consensus 1164 dLsl~I~a~slr~~k~~~~~~SF~elLk~~~~--~d~~~C-~Cgkk~~-kq~~I~rlP~VLtIhLkRFs~~~s~~dIsk~ 1239 (1351)
++.++|+... ...+++++..+.. ...+.| +|+.... ++..|.++|+||+|||+||..... +..
T Consensus 99 ~L~L~i~~~~---------~~~le~l~~~~~~~~~~e~~C~~C~~~~a~k~~~i~~~P~vL~i~lkRf~~~~~---~~~- 165 (245)
T cd02673 99 FLDVSMIDNK---------LDIDELLISNFKTWSPIEKDCSSCKCESAISSERIMTFPECLSINLKRYKLRIA---TSD- 165 (245)
T ss_pred eeccccccCC---------cchHHHHHHHhhcccccCccCCCCCCccceeechhhhCChhhEEeeEeeeeccc---ccc-
Confidence 8888776521 1234455443321 226789 9987643 566799999999999999964221 110
Q ss_pred eeccCccccccccccCCCCCceEEEEEEEEEeC---CCCeEEEEEEecCC-CCCEEEeeCCeeeEcCchhhhhhccCccc
Q 000686 1240 LSALSNELDLSKLFQGYLPDYTYFVVSMVCFCK---DRQHSVCFLYDDQH-DEHYVQHSDSNVEAYSEVNILATDDNHSE 1315 (1351)
Q Consensus 1240 l~si~~~LDLs~~y~gld~~~~Y~LvAVV~H~g---eGGHY~AyvR~~~~-~g~Wy~FDDs~Vt~VssWe~Vlsk~~~s~ 1315 (1351)
...+ ..+++.++.. ++..|+|+|||+|.| ++|||+||+|.. . +|+||.|||+.|+.|+ +++|+..
T Consensus 166 ~~~~-~~~~~~~~~~---~~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~-~~~~~Wy~fnD~~V~~v~-~~~v~~~----- 234 (245)
T cd02673 166 YLKK-NEEIMKKYCG---TDAKYSLVAVICHLGESPYDGHYIAYTKEL-YNGSSWLYCSDDEIRPVS-KNDVSTN----- 234 (245)
T ss_pred cccc-cccccccccC---CCceEEEEEEEEECCCCCCCceEEEEEEcC-CCCCeEEEeeCceeeEcC-HHHHhhc-----
Confidence 1111 1334554322 356899999999998 569999999975 4 7899999999999996 4777631
Q ss_pred ccccccccceEEEEEe
Q 000686 1316 TLDMMISFQRLIGLKQ 1331 (1351)
Q Consensus 1316 ~~p~vl~~QpYLLFYq 1331 (1351)
...+||||||+
T Consensus 235 -----~~~~aYiLFY~ 245 (245)
T cd02673 235 -----ARSSGYLIFYD 245 (245)
T ss_pred -----cCCceEEEEEC
Confidence 12589999995
No 24
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.2e-32 Score=323.48 Aligned_cols=309 Identities=15% Similarity=0.175 Sum_probs=228.6
Q ss_pred cccCcccccCCCChHHHHHHHHhhCcHHHHHHHhcCCCccc--cCCCCchHHHHHHHHHHHhc--CCCCcChHHHHHHHH
Q 000686 1003 NVLGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQ--KHDGNPCIVCAFFDICAAKN--RGEAVDPTELRIALS 1078 (1351)
Q Consensus 1003 ~~~~~GL~Nl~GTCYLNSILQ~L~hip~FRe~LLs~~~~~h--~~~~~pcV~caL~~LF~s~~--~~~~vsP~~Lr~aL~ 1078 (1351)
+..-+||+|.|+|||||+++|-|+|+|.+|..++...+... .-.++..|+|.||.+|.... .-+++.|..|.+.+.
T Consensus 92 p~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s~~e~vl~~lQ~iF~hL~~s~lQyyVPeg~Wk~Fr 171 (944)
T KOG1866|consen 92 PEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMSGDEKVLRHLQVIFGHLAASQLQYYVPEGFWKQFR 171 (944)
T ss_pred CcceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHhh
Confidence 44679999996699999999999999999998887654311 11122259999999998765 678899999998886
Q ss_pred hhccCCccccccccccHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCccccccceeEEEeeeeeccCCCCccc
Q 000686 1079 TYYCNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRSG 1158 (1351)
Q Consensus 1079 k~~p~~~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~s~~eSE~~~~~~~~c~~~~cIVh~LFgG~L~s~I~C~~Cg~~S~ 1158 (1351)
-+ + .+.. ..+||||-|||..|||.|.+.++... ..-+....|+|....+..|..|-|.=.
T Consensus 172 ~~-~-~pln-~reqhDA~eFf~sLld~~De~LKklg-----------------~p~lf~n~f~G~ysdqKIC~~CpHRY~ 231 (944)
T KOG1866|consen 172 LW-G-EPLN-LREQHDALEFFNSLLDSLDEALKKLG-----------------HPQLFSNTFGGSYSDQKICQGCPHRYE 231 (944)
T ss_pred cc-C-Cccc-hHhhhhHHHHHHHHHHHHHHHHHHhC-----------------CcHHHHHHhcCccchhhhhccCCcccC
Confidence 54 2 2433 46899999999999999999887653 134678899999999999999997644
Q ss_pred -ccccceeeeecccchhhhhcccccccCHHHHHHHhc--CCCcccc-cCCCcce--EEEEEecCCceEEEEEEeecCC-C
Q 000686 1159 -YQKCTYLSFGISANNLRSLKNEHMDMSSKKVLELMG--LGEQMTC-GCGQLNS--IYHSLWRLPHVFVSVIDWQRGD-E 1231 (1351)
Q Consensus 1159 -~~~F~dLsl~I~a~slr~~k~~~~~~SF~elLk~~~--~~d~~~C-~Cgkk~~--kq~~I~rlP~VLtIhLkRFs~~-~ 1231 (1351)
.++|+.+++.|...++ ..+++..++... ..+.|+| +|+++.. ++..|.++|+||+|||+||... +
T Consensus 232 ~eE~F~~l~l~i~~~nL--------eesLeqfv~gevlEG~nAYhCeKCdeK~~TvkRt~ik~LPsvl~IqLkRF~yD~e 303 (944)
T KOG1866|consen 232 CEESFTTLNLDIRHQNL--------EESLEQFVKGEVLEGANAYHCEKCDEKVDTVKRTCIKKLPSVLAIQLKRFDYDWE 303 (944)
T ss_pred ccccceeeeeecccchH--------HHHHHHHHHHHHhcCcchhhhhhhhhhhHhHHHHHHhhCChhheehhhhccchhh
Confidence 5589999988874332 246666666543 3469999 9988764 5677999999999999999742 1
Q ss_pred cccccc-ceeeccCcccccccccc-CC--------C---------CCceEEEEEEEEEeC--CCCeEEEEEEec--CCCC
Q 000686 1232 SSEDIS-TTLSALSNELDLSKLFQ-GY--------L---------PDYTYFVVSMVCFCK--DRQHSVCFLYDD--QHDE 1288 (1351)
Q Consensus 1232 s~~dIs-k~l~si~~~LDLs~~y~-gl--------d---------~~~~Y~LvAVV~H~g--eGGHY~AyvR~~--~~~g 1288 (1351)
+..-|. .-...||+.|||.+|.- |. + ..++|+|+||++|+| .||||++|+++. ..+|
T Consensus 304 ~~~~iK~n~~frFP~~ldMePYtvsg~a~~e~~~~~~g~~~e~s~~t~~YeLvGVlvHSGqAsaGHYySfIk~rr~~~~~ 383 (944)
T KOG1866|consen 304 RECAIKFNDYFRFPRELDMEPYTVSGVAKLEGENVESGQQLEQSAGTTKYELVGVLVHSGQASAGHYYSFIKQRRGEDGN 383 (944)
T ss_pred hccccccchhcccchhhcCCceeehhhhhhccccCCcCcccccccCcceeEEEEEEEecccccCcchhhhhhhhccCCCC
Confidence 111110 12346788999998631 11 1 135899999999999 899999999875 3458
Q ss_pred CEEEeeCCeeeEcCchhhhhhccCcc---cccccc----cccceEEEEEecCCCCcccc
Q 000686 1289 HYVQHSDSNVEAYSEVNILATDDNHS---ETLDMM----ISFQRLIGLKQDHDGSRLAI 1340 (1351)
Q Consensus 1289 ~Wy~FDDs~Vt~VssWe~Vlsk~~~s---~~~p~v----l~~QpYLLFYq~~~~tp~~~ 1340 (1351)
+||+|||..|++.+ .+.+-.+|=.- +..|++ ...-||+|||+|.+.+|.+.
T Consensus 384 kWykfnD~~Vte~~-~n~me~~cfGGey~q~~~~~~~rrR~WNAYmlFYer~~d~p~~~ 441 (944)
T KOG1866|consen 384 KWYKFNDGDVTECK-MNEMENECFGGEYMQMMKRMSYRRRWWNAYMLFYERMDDIPTDD 441 (944)
T ss_pred ceEeccCccccccc-hhhHHHHhhcchhhhcccccchHHHhhhhHHHHHHHhcCCCccc
Confidence 99999999999975 34554444211 111111 35678999999998888764
No 25
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=1.3e-30 Score=286.25 Aligned_cols=221 Identities=13% Similarity=0.061 Sum_probs=161.4
Q ss_pred ccccCCCChHHHHHHHHhhCcHHHHHHHhcCCCccccCCCCchHHHHHHHHHHHhcCCCCcChHHHHHHHHhhccCCccc
Q 000686 1008 GLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKHDGNPCIVCAFFDICAAKNRGEAVDPTELRIALSTYYCNQNNF 1087 (1351)
Q Consensus 1008 GL~Nl~GTCYLNSILQ~L~hip~FRe~LLs~~~~~h~~~~~pcV~caL~~LF~s~~~~~~vsP~~Lr~aL~k~~p~~~~F 1087 (1351)
||.|.||||++|++.|+|+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 20 (228)
T cd02665 1 GLKNVGNTCWFSAVIQSLFS------------------------------------------------------------ 20 (228)
T ss_pred CccccCcchhHHHHHHHHHH------------------------------------------------------------
Confidence 89999779999999999987
Q ss_pred cccccccHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCccccccceeEEEeeeeeccCCCCccc-ccccceee
Q 000686 1088 QEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRSG-YQKCTYLS 1166 (1351)
Q Consensus 1088 ~~g~QqDA~EFL~~LLd~LH~~l~~~~s~~eSE~~~~~~~~c~~~~cIVh~LFgG~L~s~I~C~~Cg~~S~-~~~F~dLs 1166 (1351)
+|||||||+..||+.|+..+....... . ......++|.++|+|++.+++.| |+..|. .++|.++.
T Consensus 21 ---~QQDa~Ef~~~Lld~Le~~l~~~~~~~--------~-~~~~~~~~i~~lF~G~~~~~~~~--~~~~s~~~E~F~~L~ 86 (228)
T cd02665 21 ---QQQDVSEFTHLLLDWLEDAFQAAAEAI--------S-PGEKSKNPMVQLFYGTFLTEGVL--EGKPFCNCETFGQYP 86 (228)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhccccccc--------c-ccccccchHhhceEEEEEEEEEE--CCCcccccCccEEEE
Confidence 689999999999999999886432100 0 01134678999999999987777 777766 45899998
Q ss_pred eecccchhhhhcccccccCHHHHHHHhcCCC---cccc-cCCCcceEEEEEecCCceEEEEEEeecCCCccccccceeec
Q 000686 1167 FGISANNLRSLKNEHMDMSSKKVLELMGLGE---QMTC-GCGQLNSIYHSLWRLPHVFVSVIDWQRGDESSEDISTTLSA 1242 (1351)
Q Consensus 1167 l~I~a~slr~~k~~~~~~SF~elLk~~~~~d---~~~C-~Cgkk~~kq~~I~rlP~VLtIhLkRFs~~~s~~dIsk~l~s 1242 (1351)
++|... .++.++|+.+...+ ...| .| .+..++..|.++|+||+|||+||.... ....++...
T Consensus 87 l~i~~~-----------~~L~e~L~~~~~ee~l~~~~~~~~-~~~~~~~~i~~lP~vL~i~LkRF~~~~--~~~~Ki~~~ 152 (228)
T cd02665 87 LQVNGY-----------GNLHECLEAAMFEGEVELLPSDHS-VKSGQERWFTELPPVLTFELSRFEFNQ--GRPEKIHDK 152 (228)
T ss_pred EEECCC-----------CCHHHHHHHhhhhcccccccccch-hhhhhhhhhhhCChhhEEEeEeeEEcC--CccEECCEE
Confidence 877531 35666665542221 2223 22 122355679999999999999997532 222345556
Q ss_pred cCccccccccccCCCCCceEEEEEEEEEeC--CCCeEEEEEEecCCCCCEEEeeCCeeeEcCchhhhhhccCcccccccc
Q 000686 1243 LSNELDLSKLFQGYLPDYTYFVVSMVCFCK--DRQHSVCFLYDDQHDEHYVQHSDSNVEAYSEVNILATDDNHSETLDMM 1320 (1351)
Q Consensus 1243 i~~~LDLs~~y~gld~~~~Y~LvAVV~H~g--eGGHY~AyvR~~~~~g~Wy~FDDs~Vt~VssWe~Vlsk~~~s~~~p~v 1320 (1351)
+.+|+.|. ...|+|+|||+|.| ++|||+||+|+. .+++||.|||+.|++++ ++.|+..+- +..
T Consensus 153 v~FP~~l~--------~~~Y~L~aVi~H~G~~~~GHY~~~i~~~-~~~~W~~fdD~~V~~~~-~~~v~~~~f--Gg~--- 217 (228)
T cd02665 153 LEFPQIIQ--------QVPYELHAVLVHEGQANAGHYWAYIYKQ-SRQEWEKYNDISVTESS-WEEVERDSF--GGG--- 217 (228)
T ss_pred EEeeCccC--------CceeEEEEEEEecCCCCCCEEEEEEEcC-CCCEEEEEECCeeEEcC-HHHHhhhcc--CCC---
Confidence 66666653 46899999999998 789999999975 68999999999999996 577875320 111
Q ss_pred cccceEEEEEe
Q 000686 1321 ISFQRLIGLKQ 1331 (1351)
Q Consensus 1321 l~~QpYLLFYq 1331 (1351)
...+||||||.
T Consensus 218 ~~~~AYiLfYv 228 (228)
T cd02665 218 RNPSAYCLMYI 228 (228)
T ss_pred CCCceEEEEEC
Confidence 14689999995
No 26
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=5.7e-30 Score=272.99 Aligned_cols=234 Identities=24% Similarity=0.337 Sum_probs=168.9
Q ss_pred ccccCCCChHHHHHHHHhhCcHHHHHHHhcCCCccccCCCCchHHHHHHHHHHHhcCCCCcChHHHHHHHHhhccCCccc
Q 000686 1008 GLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKHDGNPCIVCAFFDICAAKNRGEAVDPTELRIALSTYYCNQNNF 1087 (1351)
Q Consensus 1008 GL~Nl~GTCYLNSILQ~L~hip~FRe~LLs~~~~~h~~~~~pcV~caL~~LF~s~~~~~~vsP~~Lr~aL~k~~p~~~~F 1087 (1351)
||.|.||||||||+||+|++
T Consensus 1 Gl~N~~n~Cy~ns~lq~l~~------------------------------------------------------------ 20 (255)
T cd02257 1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------ 20 (255)
T ss_pred CccccCcchHHhHHHHHHHH------------------------------------------------------------
Confidence 89999779999999999999
Q ss_pred cccccccHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCccccccceeEEEeeeeeccCCCCccccc-ccceee
Q 000686 1088 QEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRSGYQ-KCTYLS 1166 (1351)
Q Consensus 1088 ~~g~QqDA~EFL~~LLd~LH~~l~~~~s~~eSE~~~~~~~~c~~~~cIVh~LFgG~L~s~I~C~~Cg~~S~~~-~F~dLs 1166 (1351)
.||||+|||..+|+.|+..+...... ...+....++++++|+|.+.+.+.|..|+..+... .+..+.
T Consensus 21 ---~q~Da~E~l~~ll~~l~~~~~~~~~~---------~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~~~~~~~~~l~ 88 (255)
T cd02257 21 ---EQQDAHEFLLFLLDKLHEELKKSSKR---------TSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFLS 88 (255)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhhccc---------ccccccCCchhhhhcccEEeeEEECCCCCCCccCcccceeEE
Confidence 68999999999999999987653210 01122346789999999999999999999766533 555566
Q ss_pred eecccchhhhhcccccccCHHHHHHHhcC---CCcccc-cCC--Ccc--eEEEEEecCCceEEEEEEeecCCC--ccccc
Q 000686 1167 FGISANNLRSLKNEHMDMSSKKVLELMGL---GEQMTC-GCG--QLN--SIYHSLWRLPHVFVSVIDWQRGDE--SSEDI 1236 (1351)
Q Consensus 1167 l~I~a~slr~~k~~~~~~SF~elLk~~~~---~d~~~C-~Cg--kk~--~kq~~I~rlP~VLtIhLkRFs~~~--s~~dI 1236 (1351)
++++.... ...+|.++|+.... .+...| .|+ ... .++..|.++|+||+|+|+||.... ...++
T Consensus 89 l~~~~~~~-------~~~~l~~~l~~~~~~e~~~~~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~k~ 161 (255)
T cd02257 89 LPLPVKGL-------PQVSLEDCLEKFFKEEILEGDNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKL 161 (255)
T ss_pred eeccCCCC-------CCCcHHHHHHHhhhhhccCCCCcccCCCCcccceeEEEecccCCceeEEEeeceeeccccccccC
Confidence 66654210 12467777766432 234566 776 222 367789999999999999996422 11111
Q ss_pred cceeeccCcccccccccc-------CCCCCceEEEEEEEEEeC---CCCeEEEEEEecCCCCCEEEeeCCeeeEcCchhh
Q 000686 1237 STTLSALSNELDLSKLFQ-------GYLPDYTYFVVSMVCFCK---DRQHSVCFLYDDQHDEHYVQHSDSNVEAYSEVNI 1306 (1351)
Q Consensus 1237 sk~l~si~~~LDLs~~y~-------gld~~~~Y~LvAVV~H~g---eGGHY~AyvR~~~~~g~Wy~FDDs~Vt~VssWe~ 1306 (1351)
...+.++..|++..++. +......|+|+|||+|.| ++|||+||+|.. ..++||.|||..|++|+. +.
T Consensus 162 -~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~-~~~~W~~~nD~~V~~v~~-~~ 238 (255)
T cd02257 162 -NTKVSFPLELDLSPYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDP-SDGKWYKFNDDKVTEVSE-EE 238 (255)
T ss_pred -CCeEeCCCcccCccccccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCC-CCCceEEEeccccEEcCH-HH
Confidence 23355666777765542 222456899999999997 479999999975 459999999999999975 55
Q ss_pred hhhccCcccccccccccceEEEEEe
Q 000686 1307 LATDDNHSETLDMMISFQRLIGLKQ 1331 (1351)
Q Consensus 1307 Vlsk~~~s~~~p~vl~~QpYLLFYq 1331 (1351)
+... .....+||+|||+
T Consensus 239 ~~~~--------~~~~~~~yll~Y~ 255 (255)
T cd02257 239 VLEF--------GSLSSSAYILFYE 255 (255)
T ss_pred hhhc--------cCCCCceEEEEEC
Confidence 5321 1235799999995
No 27
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.4e-30 Score=306.10 Aligned_cols=301 Identities=15% Similarity=0.166 Sum_probs=227.7
Q ss_pred CcccCcccccCCCChHHHHHHHHhhCcHHHHHHHhcCCCccccCCCCchHHHHHHHHHHHhc-CCCCcChHHHHHHHHhh
Q 000686 1002 VNVLGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKHDGNPCIVCAFFDICAAKN-RGEAVDPTELRIALSTY 1080 (1351)
Q Consensus 1002 ~~~~~~GL~Nl~GTCYLNSILQ~L~hip~FRe~LLs~~~~~h~~~~~pcV~caL~~LF~s~~-~~~~vsP~~Lr~aL~k~ 1080 (1351)
...+..||+|+|.||||||.||+|+.+..||+.....+. .|.. +...|+-|||++|..++ ...+|+.++|...+++-
T Consensus 189 keTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipT-d~p~-grdSValaLQr~Fynlq~~~~PvdTteltrsfgWd 266 (1089)
T COG5077 189 KETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPT-DHPR-GRDSVALALQRLFYNLQTGEEPVDTTELTRSFGWD 266 (1089)
T ss_pred cceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCC-CCCC-ccchHHHHHHHHHHHHhccCCCcchHHhhhhcCcc
Confidence 345789999995599999999999999999999998863 2333 33369999999999888 88999999998888753
Q ss_pred ccCCccccccccccHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCccccccceeEEEeeeeeccCCCCccccc
Q 000686 1081 YCNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRSGYQ 1160 (1351)
Q Consensus 1081 ~p~~~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~s~~eSE~~~~~~~~c~~~~cIVh~LFgG~L~s~I~C~~Cg~~S~~~ 1160 (1351)
. ...| +|||.|||-+.+.|.|..++.+.. -.-.++.+|-|.+.+.+.|.+-.+.|...
T Consensus 267 s--~dsf---~QHDiqEfnrVl~DnLEksmrgt~-----------------VEnaln~ifVgkmksyikCvnvnyEsarv 324 (1089)
T COG5077 267 S--DDSF---MQHDIQEFNRVLQDNLEKSMRGTV-----------------VENALNGIFVGKMKSYIKCVNVNYESARV 324 (1089)
T ss_pred c--chHH---HHHhHHHHHHHHHHHHHHhhcCCh-----------------hhhHHhHHHHHHhhceeeEEEechhhhhH
Confidence 2 2334 899999999999999998654332 13346789999999999999999998865
Q ss_pred -ccceeeeecccchhhhhcccccccCHHHHHHHhcC--CCcccc-cCCCcc-eEEEEEecCCceEEEEEEeecCCCcccc
Q 000686 1161 -KCTYLSFGISANNLRSLKNEHMDMSSKKVLELMGL--GEQMTC-GCGQLN-SIYHSLWRLPHVFVSVIDWQRGDESSED 1235 (1351)
Q Consensus 1161 -~F~dLsl~I~a~slr~~k~~~~~~SF~elLk~~~~--~d~~~C-~Cgkk~-~kq~~I~rlP~VLtIhLkRFs~~~s~~d 1235 (1351)
.|+++.+++-. +...+.||...++...+ ++.|.| +-|-.. +|-.++..+||||-++||||...-..+-
T Consensus 325 edfwdiqlNvK~-------~knLqeSfr~yIqvE~l~GdN~Y~ae~~GlqdAkKGViFeSlPpVlhlqLKRFeyDfe~d~ 397 (1089)
T COG5077 325 EDFWDIQLNVKG-------MKNLQESFRRYIQVETLDGDNRYNAEKHGLQDAKKGVIFESLPPVLHLQLKRFEYDFERDM 397 (1089)
T ss_pred HHHHHHHhcccc-------hhhHHHHHHHhhhheeccCCcccccccccchhhccceeeccCchHHHHHHHHhccccccCc
Confidence 68888776543 12345688888877654 357777 444332 3567899999999999999975333332
Q ss_pred cccee--eccCccccccccccC-CC----CCceEEEEEEEEEeC--CCCeEEEEEEecCCCCCEEEeeCCeeeEcCchhh
Q 000686 1236 ISTTL--SALSNELDLSKLFQG-YL----PDYTYFVVSMVCFCK--DRQHSVCFLYDDQHDEHYVQHSDSNVEAYSEVNI 1306 (1351)
Q Consensus 1236 Isk~l--~si~~~LDLs~~y~g-ld----~~~~Y~LvAVV~H~g--eGGHY~AyvR~~~~~g~Wy~FDDs~Vt~VssWe~ 1306 (1351)
+-++- ..||.+|||.+|... .+ ..+.|.|+||++|+| ++|||+|+++.. .+|+||.|||..|+.++. ..
T Consensus 398 mvKINDryEFP~eiDl~pfld~da~ksen~d~vY~LygVlVHsGDl~~GHyYallKpe-~dg~WykfdDtrVtrat~-ke 475 (1089)
T COG5077 398 MVKINDRYEFPLEIDLLPFLDRDADKSENSDAVYVLYGVLVHSGDLHEGHYYALLKPE-KDGRWYKFDDTRVTRATE-KE 475 (1089)
T ss_pred eeeecccccCcchhccccccCchhhhhcccCcEEEEEEEEEeccccCCceEEEEeccc-cCCCceeecceehhhHHH-HH
Confidence 32332 246678899987642 21 237999999999999 789999999987 999999999999999875 66
Q ss_pred hhhccC---------cccccccccccceEEEEEecCCC
Q 000686 1307 LATDDN---------HSETLDMMISFQRLIGLKQDHDG 1335 (1351)
Q Consensus 1307 Vlsk~~---------~s~~~p~vl~~QpYLLFYq~~~~ 1335 (1351)
|+...= .....|...|..||+|.|-|.+.
T Consensus 476 vleeNfGgd~~~~~k~r~~~~~kRfmsAYmLvYlRks~ 513 (1089)
T COG5077 476 VLEENFGGDHPYKDKIRDHSGIKRFMSAYMLVYLRKSM 513 (1089)
T ss_pred HHHHhcCCCCCCcccccCCchhhhhhhhheeeeehHhH
Confidence 776431 11223334577889999998753
No 28
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=9.9e-29 Score=277.76 Aligned_cols=228 Identities=17% Similarity=0.201 Sum_probs=163.7
Q ss_pred cCcccccCCCChHHHHHHHHhhCcHHHHHHHhcCCCccccCCCCchHHHHHHHHHHHhcCCCCcChHHHHHHHHhhccCC
Q 000686 1005 LGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKHDGNPCIVCAFFDICAAKNRGEAVDPTELRIALSTYYCNQ 1084 (1351)
Q Consensus 1005 ~~~GL~Nl~GTCYLNSILQ~L~hip~FRe~LLs~~~~~h~~~~~pcV~caL~~LF~s~~~~~~vsP~~Lr~aL~k~~p~~ 1084 (1351)
..+||.|.+.|||+||+||+|+++|+||+.+.. ..+.|..+.|++|+|.-||. . +
T Consensus 14 ~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~~~---~~~~~~~~~~l~~el~~lfs-----------~----~------- 68 (268)
T cd02672 14 NYAGLENHITNSYCNSLLQLLYFIPPFRNFTAI---ILVACPKESCLLCELGYLFS-----------T----L------- 68 (268)
T ss_pred cccccccCCccchHHHHHHHHHhcHHHHHHHHh---hcccCCcCccHHHHHHHHHH-----------H----H-------
Confidence 579999995599999999999999999998322 24567777899999999990 0 1
Q ss_pred ccccccccccHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCccccccceeEEEeeeeeccCCCCcccc-cccc
Q 000686 1085 NNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRSGY-QKCT 1163 (1351)
Q Consensus 1085 ~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~s~~eSE~~~~~~~~c~~~~cIVh~LFgG~L~s~I~C~~Cg~~S~~-~~F~ 1163 (1351)
.+-|-.+|++.++..... .+ ..|++++.. .+|.
T Consensus 69 ----------iq~F~~fll~~i~~~~~~--------------------------~~----------~~C~~~s~~~~~~~ 102 (268)
T cd02672 69 ----------IQNFTRFLLETISQDQLG--------------------------TP----------FSCGTSRNSVSLLY 102 (268)
T ss_pred ----------HHHHHHHHHHHHHHHhcc--------------------------cC----------CCCCceeeccccce
Confidence 133556677777743210 00 578888874 4899
Q ss_pred eeeeecccchhhhhcccccccCHHHHHHHhcC---CCcccc-cCCCcce--EEEEEecCCc----eEEEEEEeecCCCcc
Q 000686 1164 YLSFGISANNLRSLKNEHMDMSSKKVLELMGL---GEQMTC-GCGQLNS--IYHSLWRLPH----VFVSVIDWQRGDESS 1233 (1351)
Q Consensus 1164 dLsl~I~a~slr~~k~~~~~~SF~elLk~~~~---~d~~~C-~Cgkk~~--kq~~I~rlP~----VLtIhLkRFs~~~s~ 1233 (1351)
++++++|... .....+|.++|+.+.. .+.+.| .|++.+. ++.+|+++|+ ||+|||+||+.....
T Consensus 103 ~LsLpip~~~------~~~~~sl~~cL~~~~~~E~~~~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~ 176 (268)
T cd02672 103 TLSLPLGSTK------TSKESTFLQLLKRSLDLEKVTKAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGEFDD 176 (268)
T ss_pred eeeeecCccc------cccCCCHHHHHHHHhhhhhcccccccccCcccccEEEEEeecCCCcccceEEEEEeccChhhcc
Confidence 9999988632 1123588889887642 236789 9987764 7888999999 999999999742111
Q ss_pred --------ccccceeeccCccccccccc-cCCCCCceEEEEEEEEEeC---CCCeEEEEEEecCC----CCCEEEeeCCe
Q 000686 1234 --------EDISTTLSALSNELDLSKLF-QGYLPDYTYFVVSMVCFCK---DRQHSVCFLYDDQH----DEHYVQHSDSN 1297 (1351)
Q Consensus 1234 --------~dIsk~l~si~~~LDLs~~y-~gld~~~~Y~LvAVV~H~g---eGGHY~AyvR~~~~----~g~Wy~FDDs~ 1297 (1351)
.++ ...+.++..+|+.... .+.....+|+|+|||+|.| +||||+||+|.. . .++||+|||..
T Consensus 177 ~~~~~~~~~~~-~~~v~f~~~~~~~~~~~~~~~~~~~Y~L~gvV~hig~~~~~GHyva~vk~~-~~~~~~~~WylFND~~ 254 (268)
T cd02672 177 INVVLPSGKVM-QNKVSPKAIDHDKLVKNRGQESIYKYELVGYVCEINDSSRGQHNVVFVIKV-NEESTHGRWYLFNDFL 254 (268)
T ss_pred cCcceeEEEec-CCeecccccccchhhhccCCCCCceEEEEEEEEEecCCCCCCcEEEEEEcc-CCCCCCCcEEEecCeE
Confidence 111 1123333334443222 2333456899999999996 579999999964 2 68999999999
Q ss_pred eeEcCchhhhhhccCcccccccccccceEEEEEe
Q 000686 1298 VEAYSEVNILATDDNHSETLDMMISFQRLIGLKQ 1331 (1351)
Q Consensus 1298 Vt~VssWe~Vlsk~~~s~~~p~vl~~QpYLLFYq 1331 (1351)
|++|+. +||||||+
T Consensus 255 V~~vs~--------------------~aYiLfY~ 268 (268)
T cd02672 255 VTPVSE--------------------LAYILLYQ 268 (268)
T ss_pred EEEcCc--------------------hheeeecC
Confidence 999974 59999996
No 29
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.3e-27 Score=282.51 Aligned_cols=202 Identities=13% Similarity=0.185 Sum_probs=147.7
Q ss_pred CcccCcccccCCCChHHHHHHHHhhCcHHHHHHHhcCCCccccCCCCc--hHHHHHHHHHHHhc-----C-------CCC
Q 000686 1002 VNVLGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKHDGNP--CIVCAFFDICAAKN-----R-------GEA 1067 (1351)
Q Consensus 1002 ~~~~~~GL~Nl~GTCYLNSILQ~L~hip~FRe~LLs~~~~~h~~~~~p--cV~caL~~LF~s~~-----~-------~~~ 1067 (1351)
...+.+||.|+||+||||||||+|+++|.|...++........-..+| |+.|++.+|...+. + ...
T Consensus 303 ~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~qng 382 (763)
T KOG0944|consen 303 FGPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSNQNG 382 (763)
T ss_pred cCCCccceeecCcchhHHHHHHHheecccHHHhhccccceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCccccCC
Confidence 344679999998899999999999999999999988732222222233 89999999995321 2 368
Q ss_pred cChHHHHHHHHhhccCCccccccccccHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCccccccceeEEEeee
Q 000686 1068 VDPTELRIALSTYYCNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFES 1147 (1351)
Q Consensus 1068 vsP~~Lr~aL~k~~p~~~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~s~~eSE~~~~~~~~c~~~~cIVh~LFgG~L~s~ 1147 (1351)
++|..|+..+++-. +.|...+||||+|||.+||+.|.+..-. ...-++.+|...+..+
T Consensus 383 IsP~mFK~~igknH---peFst~~QQDA~EFllfLl~ki~~n~rs-------------------~~~nptd~frF~ve~R 440 (763)
T KOG0944|consen 383 ISPLMFKALIGKNH---PEFSTNRQQDAQEFLLFLLEKIRENSRS-------------------SLPNPTDLFRFEVEDR 440 (763)
T ss_pred cCHHHHHHHHcCCC---ccccchhhhhHHHHHHHHHHHHhhcccc-------------------cCCCHHHHHHhhhhhh
Confidence 99999999998654 7899999999999999999999853211 1133579999999999
Q ss_pred eeccCCCCcccccccceeeeecccchhhhhcccccccCHHHHHHHhcCC--Ccccc-cCCCcce--EEEEEecCCceEEE
Q 000686 1148 IECINCHMRSGYQKCTYLSFGISANNLRSLKNEHMDMSSKKVLELMGLG--EQMTC-GCGQLNS--IYHSLWRLPHVFVS 1222 (1351)
Q Consensus 1148 I~C~~Cg~~S~~~~F~dLsl~I~a~slr~~k~~~~~~SF~elLk~~~~~--d~~~C-~Cgkk~~--kq~~I~rlP~VLtI 1222 (1351)
+.|..|++++.+. +.++.+.++..-.. .......|..+|+.+... +.+.| .||.+.. +...+.++|.+|+|
T Consensus 441 v~C~~c~kVrYs~-~~~~~i~lpv~~~~---~v~~~v~~~~cleaff~pq~~df~s~ac~~K~~a~kt~~~ksfP~yLii 516 (763)
T KOG0944|consen 441 VSCLGCRKVRYSY-ESEYLIQLPVPMTN---EVREKVPISACLEAFFEPQVDDFWSTACGEKKGATKTTRFKSFPDYLII 516 (763)
T ss_pred hhhhccccccccc-hhheeeEeeccccc---cccccCCHHHHHHHhcCCcchhhhhHhhcCccccccccccccCCceEEE
Confidence 9999999997643 22344444432100 011235788888887543 24445 9987764 45579999999999
Q ss_pred EEEeecC
Q 000686 1223 VIDWQRG 1229 (1351)
Q Consensus 1223 hLkRFs~ 1229 (1351)
|.+||..
T Consensus 517 qv~rf~~ 523 (763)
T KOG0944|consen 517 QVGRFTL 523 (763)
T ss_pred EeeEEEe
Confidence 9999964
No 30
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=9.7e-27 Score=295.60 Aligned_cols=316 Identities=20% Similarity=0.266 Sum_probs=226.6
Q ss_pred hccCcccCcccccCCCChHHHHHHHHhhCcHHHHHHHhcCCCccccCCCCc-----hHHHHHHHHHHH-hc-CCCCcChH
Q 000686 999 RLNVNVLGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKHDGNP-----CIVCAFFDICAA-KN-RGEAVDPT 1071 (1351)
Q Consensus 999 ~~g~~~~~~GL~Nl~GTCYLNSILQ~L~hip~FRe~LLs~~~~~h~~~~~p-----cV~caL~~LF~s-~~-~~~~vsP~ 1071 (1351)
..+...+.+||.|+|||||||+.+|||.+.+.++++|+...+....+-.++ -+..++.++..+ |. ....+.|.
T Consensus 239 ~~~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~~~v~~~ 318 (842)
T KOG1870|consen 239 SSPSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGNKSAVAPT 318 (842)
T ss_pred cCCCcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCCccccCch
Confidence 345667889999998899999999999999999999998654321121111 345566666654 44 33479999
Q ss_pred HHHHHHHhhccCCccccccccccHHHHHHHHHHHHHHHhccCCCCC---------CC-cccccccccc--CCCccccccc
Q 000686 1072 ELRIALSTYYCNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDD---------KP-EDMYKDRLHC--VDSNCLVHRI 1139 (1351)
Q Consensus 1072 ~Lr~aL~k~~p~~~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~s~~---------eS-E~~~~~~~~c--~~~~cIVh~L 1139 (1351)
.++..++... +.|.++.|+|.+||+.++||.||+++......+ .. .....+.|.- ..+.++++.+
T Consensus 319 ~~~~~~~~~a---~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~s~i~d~ 395 (842)
T KOG1870|consen 319 SFRTSLASFA---SEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKRNRSVIVDL 395 (842)
T ss_pred hhhhhhhhcc---ccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhhccceeeee
Confidence 9999998875 578889999999999999999999998765321 00 1112334543 3467899999
Q ss_pred eeEEEeeeeeccCCCCccccc-ccceeeeecccchh--------------------------------------------
Q 000686 1140 FGMDIFESIECINCHMRSGYQ-KCTYLSFGISANNL-------------------------------------------- 1174 (1351)
Q Consensus 1140 FgG~L~s~I~C~~Cg~~S~~~-~F~dLsl~I~a~sl-------------------------------------------- 1174 (1351)
|.|.+.+.+.|..|+.+|.++ +|..++++++....
T Consensus 396 ~~~~~~S~~~c~~C~~~svt~d~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 475 (842)
T KOG1870|consen 396 FDGTYKSTLQCPTCGKVSVTFDPFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGALGVSVAKNGRIRDLLEYLSRTVGLLS 475 (842)
T ss_pred ecceecccccCccCCCceEEeeccccccccCCCCcccceeEEEecCCCCCChhheeeeccccchHHHHHHHHHHHhccch
Confidence 999999999999999888654 66555555442110
Q ss_pred --------------------------------------h-----------------------------------------
Q 000686 1175 --------------------------------------R----------------------------------------- 1175 (1351)
Q Consensus 1175 --------------------------------------r----------------------------------------- 1175 (1351)
.
T Consensus 476 ~~l~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~ 555 (842)
T KOG1870|consen 476 WELKPVEILFDCFNKIFAADELKLDSIYSDEELFDYELGVLKVQGSIYAIIVVRFRSRLPRSKGIRSHVSSKLFGLPLLV 555 (842)
T ss_pred hhcccceeccchhhhhhccCccccccccCCcceEEeecccccccccceEEEEEeeccccccccCcccCCCccccCCccee
Confidence 0
Q ss_pred -----h--------------------h-----------------c---------------------------c-------
Q 000686 1176 -----S--------------------L-----------------K---------------------------N------- 1179 (1351)
Q Consensus 1176 -----~--------------------~-----------------k---------------------------~------- 1179 (1351)
. . . .
T Consensus 556 ~~~~~~~~t~~~l~~~~~~~~s~~~~~~~~~v~~~~~~~~~~~~~e~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (842)
T KOG1870|consen 556 SVLSGAQSTEEDLLSVICHRTSRYSREPPLNVGYGVDDQSLKEVSEQSAESSSSVSRDPSEDDNSDQDLSLECLSEESAL 635 (842)
T ss_pred eccCCCcccccchhhHHhhcccccCCcCccccccCCCcccccccccccccccccccCCChhHhccccccchhhccCcccc
Confidence 0 0 0 0
Q ss_pred --------------------------------------------------------cccccCHHHHHHHhc----C--CC
Q 000686 1180 --------------------------------------------------------EHMDMSSKKVLELMG----L--GE 1197 (1351)
Q Consensus 1180 --------------------------------------------------------~~~~~SF~elLk~~~----~--~d 1197 (1351)
.....++.+|+..+. + ++
T Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cl~~F~~~E~L~~~~ 715 (842)
T KOG1870|consen 636 RFFQSLESRNKSDSEFEPGSTSIAVDWSPSAKYKYSSSLVSQPPEVEPRGASRSKGSPAPNSLESCLELFSEPETLGKDD 715 (842)
T ss_pred cccccccccccccccccCCCceeecccChhhccccccccccccccccccccccccCCCCcccHHHHHHhhcchhcCCccc
Confidence 000123334444332 2 35
Q ss_pred cccc-cCCCcc--eEEEEEecCCceEEEEEEeecCCCccccccceeeccCc-cccccccccCCCCCceEEEEEEEEEeC-
Q 000686 1198 QMTC-GCGQLN--SIYHSLWRLPHVFVSVIDWQRGDESSEDISTTLSALSN-ELDLSKLFQGYLPDYTYFVVSMVCFCK- 1272 (1351)
Q Consensus 1198 ~~~C-~Cgkk~--~kq~~I~rlP~VLtIhLkRFs~~~s~~dIsk~l~si~~-~LDLs~~y~gld~~~~Y~LvAVV~H~g- 1272 (1351)
.|+| +|++.+ .|+..|+++|.||+||||||.........-+..+.+|. .||+++|..+.++ ..|+|+||++|||
T Consensus 716 ~w~C~~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~r~~~~k~~~~v~fPi~~ld~s~~~~~~~~-~~Y~l~av~nHyG~ 794 (842)
T KOG1870|consen 716 RWYCPQCKELRQATKKLDLWRLPEILIIHLKRFQYSRESSSKVKTKVEFPLGSLDLSEFVVNKEQ-VLYDLYAVGNHYGQ 794 (842)
T ss_pred cccChHHHHHHHHhhhhhhhhCCceEEEEeecceeechhhhhhCccccCCCcCCCcchhhccCcc-ceeeeeeeecccCC
Confidence 8899 998765 37788999999999999999753322222345566664 6888887655544 8999999999998
Q ss_pred -CCCeEEEEEEecCCCCCEEEeeCCeeeEcCchhhhhhccCcccccccccccceEEEEEecC
Q 000686 1273 -DRQHSVCFLYDDQHDEHYVQHSDSNVEAYSEVNILATDDNHSETLDMMISFQRLIGLKQDH 1333 (1351)
Q Consensus 1273 -eGGHY~AyvR~~~~~g~Wy~FDDs~Vt~VssWe~Vlsk~~~s~~~p~vl~~QpYLLFYq~~ 1333 (1351)
.||||+||+|+. .+++||.|||+.|+.++++ .+.+ ..||+|||++.
T Consensus 795 l~~GHYta~~k~~-~~~~w~~fdDs~v~~~~~~-~i~t-------------~~aY~Lfy~r~ 841 (842)
T KOG1870|consen 795 LSGGHYTAYAKNV-GDGKWYLFDDSSVSEVDED-EIDT-------------EAAYVLFYRRL 841 (842)
T ss_pred cCCcchhhhhhcC-CCCceEEeccccCCCCChh-hccc-------------ccceEEEEEec
Confidence 789999999986 7999999999999998873 4443 57999999985
No 31
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.6e-25 Score=256.88 Aligned_cols=218 Identities=18% Similarity=0.216 Sum_probs=161.0
Q ss_pred hcccccccchhhHHHh--------h------ccCcccCcccccCCCChHHHHHHHHhhCcHHHHHHHhcCCCccccCCC-
Q 000686 983 LREENVKYQLQSEHEA--------R------LNVNVLGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKHDG- 1047 (1351)
Q Consensus 983 ~~~~~~~~~~~~E~~~--------~------~g~~~~~~GL~Nl~GTCYLNSILQ~L~hip~FRe~LLs~~~~~h~~~~- 1047 (1351)
..++.+++++|+|++. + .-++.+++||.|+||+||||||||+|+....+...|....+....-..
T Consensus 266 ~~~Eksl~~lq~eqn~nw~F~~~~~~~~sk~~~~ps~~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~ 345 (749)
T COG5207 266 KTEEKSLRKLQSEQNANWEFLEKKRAPESKGESVPSPYVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKN 345 (749)
T ss_pred cchHHHHHHHHHhhhcCcchhccccCchhhcccCCCCccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecC
Confidence 3467778999999831 1 124556899999988999999999999999999888765543222122
Q ss_pred -CchHHHHHHHHHHHh-c-----CCCCcChHHHHHHHHhhccCCccccccccccHHHHHHHHHHHHHHHhccCCCCCCCc
Q 000686 1048 -NPCIVCAFFDICAAK-N-----RGEAVDPTELRIALSTYYCNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPE 1120 (1351)
Q Consensus 1048 -~pcV~caL~~LF~s~-~-----~~~~vsP~~Lr~aL~k~~p~~~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~s~~eSE 1120 (1351)
..|+.|+|-.|...+ . ....+.|..|+..++.- ++.|...+||||+|||.+||+.|.......
T Consensus 346 P~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk~~igq~---h~eFg~~~QQDA~EFLlfLL~kirk~~~S~------- 415 (749)
T COG5207 346 PLECLFCQLMKLLSKMKETPDNEYVNGISPLDFKMLIGQD---HPEFGKFAQQDAHEFLLFLLEKIRKGERSY------- 415 (749)
T ss_pred CchhHHHHHHHHHhhccCCCCccccCCcChhhHHHHHcCC---chhhhhhhhhhHHHHHHHHHHHHhhccchh-------
Confidence 339999999999643 2 45679999999999754 478988999999999999999998532211
Q ss_pred cccccccccCCCccccccceeEEEeeeeeccCCCCcccccccceeeeecccchhhhhcccccccCHHHHHHHhcCCC--c
Q 000686 1121 DMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRSGYQKCTYLSFGISANNLRSLKNEHMDMSSKKVLELMGLGE--Q 1198 (1351)
Q Consensus 1121 ~~~~~~~~c~~~~cIVh~LFgG~L~s~I~C~~Cg~~S~~~~F~dLsl~I~a~slr~~k~~~~~~SF~elLk~~~~~d--~ 1198 (1351)
..+.|..+|...+..++.|..|+.++...+- ...+.|+... .....++.+.++.+...+ +
T Consensus 416 -----------~~~~It~lf~Fe~e~rlsC~~C~~v~ySye~-~~~i~i~le~------n~E~~di~~~v~a~f~pdtiE 477 (749)
T COG5207 416 -----------LIPPITSLFEFEVERRLSCSGCMDVSYSYES-MLMICIFLEG------NDEPQDIRKSVEAFFLPDTIE 477 (749)
T ss_pred -----------cCCCcchhhhhhhcceecccccccccccccc-eEEEEeeccc------CcchhhHHHHHHheECcccee
Confidence 1345779999999999999999999874431 2334444421 112235666777765666 8
Q ss_pred ccc-cCCCcceE--EEEEecCCceEEEEEEeec
Q 000686 1199 MTC-GCGQLNSI--YHSLWRLPHVFVSVIDWQR 1228 (1351)
Q Consensus 1199 ~~C-~Cgkk~~k--q~~I~rlP~VLtIhLkRFs 1228 (1351)
|.| +|+.+... ...|..+|.+|+++-.||+
T Consensus 478 ~~CenCk~K~~a~~k~~~kslPk~LIlq~~R~~ 510 (749)
T COG5207 478 WSCENCKGKKKASRKPFIKSLPKYLILQVGRYS 510 (749)
T ss_pred eehhhhcCcccccccchhhccCceeEEecceee
Confidence 999 89877653 3468999999999998885
No 32
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=8.4e-26 Score=293.36 Aligned_cols=299 Identities=15% Similarity=0.147 Sum_probs=220.6
Q ss_pred cCcccCcccccCCCChHHHHHHHHhhCcHHHHHHHhcCCC-ccccCCCCchHHHHHHHHHHHhc--CCCCcChHHHHHHH
Q 000686 1001 NVNVLGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLD-EVQKHDGNPCIVCAFFDICAAKN--RGEAVDPTELRIAL 1077 (1351)
Q Consensus 1001 g~~~~~~GL~Nl~GTCYLNSILQ~L~hip~FRe~LLs~~~-~~h~~~~~pcV~caL~~LF~s~~--~~~~vsP~~Lr~aL 1077 (1351)
..+..++||.|+|+||||||+||+|++++.||+.+.+.+. .+|.-... .++.+|+.+|..++ ...+|.|..+...+
T Consensus 165 ~~tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~~~~~~~~~-~v~~~lq~lF~~LQ~s~~k~Vdt~~~~~~~ 243 (1093)
T KOG1863|consen 165 RLTGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPPFTGHEDPRR-SIPLALQRLFYELQMSKRKYVDTSELTKSL 243 (1093)
T ss_pred hcCCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCCCCCcccccc-hHHHHHHHHHHHHhhcCCCCcCchhhhhhh
Confidence 3445679999996699999999999999999999999874 12332223 58999999999887 55599999999998
Q ss_pred HhhccCCccccccccccHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCccccccceeEEEeeeeeccCCCCcc
Q 000686 1078 STYYCNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRS 1157 (1351)
Q Consensus 1078 ~k~~p~~~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~s~~eSE~~~~~~~~c~~~~cIVh~LFgG~L~s~I~C~~Cg~~S 1157 (1351)
++.. ....+|||+|||+..+++.|...+.... ....+..+|.|.+.+.+.|..|+..|
T Consensus 244 ~~~~-----~~~~~QqDvqEf~~~l~d~LE~~~~~~~-----------------~~~~l~~lf~g~~~~~i~c~~~~~~s 301 (1093)
T KOG1863|consen 244 GWDS-----NDSFEQQDVQEFLTKLLDWLEDSMIDAK-----------------VENTLQDLFTGKMKSVIKCIDVDFES 301 (1093)
T ss_pred hccc-----ccHHhhhhHHHHHHHHHHHHHhhccchh-----------------hhhhhhhhhcCCcceEEEEEeeeeec
Confidence 7653 2335999999999999999998765432 13467899999999999999999988
Q ss_pred c-ccccceeeeecccchhhhhcccccccCHHHHHHHhc-CCCcccc-cCCCcce--EEEEEecCCceEEEEEEeecCCCc
Q 000686 1158 G-YQKCTYLSFGISANNLRSLKNEHMDMSSKKVLELMG-LGEQMTC-GCGQLNS--IYHSLWRLPHVFVSVIDWQRGDES 1232 (1351)
Q Consensus 1158 ~-~~~F~dLsl~I~a~slr~~k~~~~~~SF~elLk~~~-~~d~~~C-~Cgkk~~--kq~~I~rlP~VLtIhLkRFs~~~s 1232 (1351)
. ...|.++-+++-. .. ....+|..++.... .++.-+| +|...+. +...+..+|+||+|+|+||.....
T Consensus 302 ~r~e~f~d~ql~~~g--~~-----nl~~sf~~y~~~E~l~gdn~~~~~~~~~~~a~k~~~f~~lPpvl~~qL~Rf~~~~~ 374 (1093)
T KOG1863|consen 302 SRSESFLDLQLNGKG--VK-----NLEDSLHLYFEAEILLGDNKYDAECHGLQDAKKGVLFDSLPPVLFIQLMRFEYDFS 374 (1093)
T ss_pred cccccccCccccccc--hh-----hHHHHHHHhhhHHHhcCCccccccccchhhhhcceeeccCCchhhhhhhheeeecc
Confidence 5 4567766554432 11 13357777776443 3444467 8987763 557889999999999999976444
Q ss_pred cccccceeeccCcc--cccccccc--CCC---CCceEEEEEEEEEeC--CCCeEEEEEEecCCCCCEEEeeCCeeeEcCc
Q 000686 1233 SEDISTTLSALSNE--LDLSKLFQ--GYL---PDYTYFVVSMVCFCK--DRQHSVCFLYDDQHDEHYVQHSDSNVEAYSE 1303 (1351)
Q Consensus 1233 ~~dIsk~l~si~~~--LDLs~~y~--gld---~~~~Y~LvAVV~H~g--eGGHY~AyvR~~~~~g~Wy~FDDs~Vt~Vss 1303 (1351)
.+.+.++...+.+| |++.+++. ..+ ..+.|.|.||.+|.| ++|||++|++.. ..++|+.|||..|+.++.
T Consensus 375 ~~~~~Ki~d~~~fp~~i~~d~~~~~~~~~~~~~~~~y~l~~v~vh~g~~~~ghy~~~i~~~-~~~~w~kfdd~~v~~~~~ 453 (1093)
T KOG1863|consen 375 TGQKIKINDKFEFPLIIDMDRYLSRFKAEESERSAVYSLHAVLVHSGDAHSGHYVAYINPK-LDGKWVKFDDLVVTVVSE 453 (1093)
T ss_pred CCceeehhhccCCccccccchhccccchhhhhccceeccchhhcccccccCccceeeecch-hhccceeccCceeeeccH
Confidence 44444555556555 55555433 222 234999999999987 789999999987 899999999999999998
Q ss_pred hhhhhhccCcccccccccccc------eEEEEEecCC
Q 000686 1304 VNILATDDNHSETLDMMISFQ------RLIGLKQDHD 1334 (1351)
Q Consensus 1304 We~Vlsk~~~s~~~p~vl~~Q------pYLLFYq~~~ 1334 (1351)
++ |+..+- ..+...... ||.|+|.+.+
T Consensus 454 ~~-~l~~~~---g~~~~~~~~~~~~~~~~~lv~~~~s 486 (1093)
T KOG1863|consen 454 KE-ALEQNY---GTEEIELSSTADFKNAYMLVYIRDS 486 (1093)
T ss_pred HH-HHHhhC---CCcchhhhcccccCCcceEEEEecC
Confidence 54 444321 111222222 8999999853
No 33
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.4e-26 Score=270.84 Aligned_cols=149 Identities=15% Similarity=0.194 Sum_probs=104.4
Q ss_pred cCcccccCCCChHHHHHHHHhhCcHHHHHHHhcCCCcccc-CCCC----------------chHHHHHHHHHHHhc-CCC
Q 000686 1005 LGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQK-HDGN----------------PCIVCAFFDICAAKN-RGE 1066 (1351)
Q Consensus 1005 ~~~GL~Nl~GTCYLNSILQ~L~hip~FRe~LLs~~~~~h~-~~~~----------------pcV~caL~~LF~s~~-~~~ 1066 (1351)
..+||.|+|||||+|||+|+|..+|.||+.|......... .+.. -.+..+|..+..+.+ ...
T Consensus 204 ~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~~~e~~e~~ks 283 (877)
T KOG1873|consen 204 IVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALANLLEMSETTKS 283 (877)
T ss_pred cccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHhhhhhhhccCC
Confidence 4699999977999999999999999999999876653211 1110 134556666555555 778
Q ss_pred CcChHHHHHHHHhhccCCccccccccccHHHHHHHHHHHHHHHhccCC-------CCCCCcccccccccc----------
Q 000686 1067 AVDPTELRIALSTYYCNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVN-------SDDKPEDMYKDRLHC---------- 1129 (1351)
Q Consensus 1067 ~vsP~~Lr~aL~k~~p~~~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~-------s~~eSE~~~~~~~~c---------- 1129 (1351)
++.|..|-..|.... +.|.+++||||||+|+.|||.|..+-.... +.+++... ..+..|
T Consensus 284 v~~Pr~lF~~~C~k~---pqF~g~~QhDsHELLR~LLD~l~~EE~~~~kk~Il~~fG~~t~~l-~scle~~q~sKvYe~f 359 (877)
T KOG1873|consen 284 VITPRTLFGQFCSKA---PQFRGYDQHDSHELLRCLLDSLRSEESRRRKKNILSNFGGETSSL-VSCLECGQKSKVYEPF 359 (877)
T ss_pred ccCHHHHHHHHHHhC---CcccccccccHHHHHHHHHHhhhHHHHHHHHHhHHHhhCccccch-hhhhhccchhhccccc
Confidence 899999877777654 789999999999999999999976533211 11111000 000111
Q ss_pred CCCccccccceeEEEeeeeeccCCCCcc
Q 000686 1130 VDSNCLVHRIFGMDIFESIECINCHMRS 1157 (1351)
Q Consensus 1130 ~~~~cIVh~LFgG~L~s~I~C~~Cg~~S 1157 (1351)
..-..++-+.|+|.+.+++.|..|...+
T Consensus 360 ~~~~~~vp~~~~~~~~s~~~~~~~~vss 387 (877)
T KOG1873|consen 360 KDLSLPVPLSFNGPLTSQIECQACDVSS 387 (877)
T ss_pred ccCCcccccccCCCcccchhhhccceec
Confidence 1124566799999999999999997544
No 34
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=99.92 E-value=3.2e-25 Score=216.21 Aligned_cols=104 Identities=25% Similarity=0.332 Sum_probs=98.7
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhcCC---cchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCch
Q 000686 23 RAAIAAYDEGDYVGALKCIKNSESRYRK---CPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSST 99 (1351)
Q Consensus 23 ~~al~~~~rg~~~~Alk~~k~la~~~~~---s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl 99 (1351)
++|+++++||||.|||++|+|++++|++ +|++|++||+||+++|.+++|| ++|++||++||+||++|+.|+|.+
T Consensus 1 e~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~--d~k~~yLl~sve~~s~a~~Lsp~~- 77 (111)
T PF04781_consen 1 EKAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENP--DVKFRYLLGSVECFSRAVELSPDS- 77 (111)
T ss_pred ChHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCc--hHHHHHHHHhHHHHHHHhccChhH-
Confidence 3799999999999999999999999964 4599999999999999999999 999999999999999999999988
Q ss_pred HHHHHHHHHHHHhhhcch---HHHHHHHHHHHHhCCCCC
Q 000686 100 IIAYFCACALYDLASFNR---EYYKVIRECNRALGIENP 135 (1351)
Q Consensus 100 ~~a~f~A~lL~~La~~~~---~Y~~av~ec~RaL~i~~P 135 (1351)
|++||+||++.+ .|++||++|+|||+|++|
T Consensus 78 ------A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~~p 110 (111)
T PF04781_consen 78 ------AHSLFELASQLGSVKYYKKAVKKAKRGLSVTNP 110 (111)
T ss_pred ------HHHHHHHHHHhhhHHHHHHHHHHHHHHhcccCC
Confidence 999999999944 699999999999999999
No 35
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.91 E-value=1.2e-23 Score=238.91 Aligned_cols=274 Identities=16% Similarity=0.233 Sum_probs=192.4
Q ss_pred cccccCCCChHHHHHHHHhhCcHHHHHHHhcCCCccccCCCCchHHHHHHHHHHHhc---CCCCcChHHHHHHHHhhccC
Q 000686 1007 TGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKHDGNPCIVCAFFDICAAKN---RGEAVDPTELRIALSTYYCN 1083 (1351)
Q Consensus 1007 ~GL~Nl~GTCYLNSILQ~L~hip~FRe~LLs~~~~~h~~~~~pcV~caL~~LF~s~~---~~~~vsP~~Lr~aL~k~~p~ 1083 (1351)
.||.|-+.|||+||+||+|+.+|++|+.+++.. .|..+.|+.|+|.=||.++. .+..+.++.|..+|+..-
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~----~c~~e~cL~cELgfLf~ml~~~~~g~~cq~sNflr~l~~~~-- 74 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL----ECPKEFCLLCELGFLFDMLDSKAKGINCQASNFLRALSWIP-- 74 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc----CCCccccHHHHHHHHHHHhhhhcCCCcChHHHHHHHHhcCH--
Confidence 499997559999999999999999999998864 26667799999999998876 566777888888887652
Q ss_pred CccccccccccHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCccccccceeEEEeeeeeccCCCCcccccccc
Q 000686 1084 QNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRSGYQKCT 1163 (1351)
Q Consensus 1084 ~~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~s~~eSE~~~~~~~~c~~~~cIVh~LFgG~L~s~I~C~~Cg~~S~~~~F~ 1163 (1351)
.....+.++|.++|+.+||+.||..+.....+... ............+.++|+......++|..|+..+.... .
T Consensus 75 -~a~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~f~~~~~~~~~c~~c~~~~~~~~-~ 148 (295)
T PF13423_consen 75 -EAAALGLQQDIQSLNRFLLEQLSMELLTFKPDIFH----TSENSSSSPESSISQLFGTSFETTIRCTSCGHESVKES-S 148 (295)
T ss_pred -HHHhcchhHHHHHHHHHHHHHHhHHHHhcCccccc----ccccccCCCcchHHHHhCcceeeeecccccCCeEEeec-c
Confidence 22334679999999999999999998765421100 00001123456789999999999999999999876432 2
Q ss_pred eeeeecccchhhhhcccccccCHHHHHHHhcC---CCcccc-cCCCcce--EEEEEecCCceEEEEEEeecCCCcccccc
Q 000686 1164 YLSFGISANNLRSLKNEHMDMSSKKVLELMGL---GEQMTC-GCGQLNS--IYHSLWRLPHVFVSVIDWQRGDESSEDIS 1237 (1351)
Q Consensus 1164 dLsl~I~a~slr~~k~~~~~~SF~elLk~~~~---~d~~~C-~Cgkk~~--kq~~I~rlP~VLtIhLkRFs~~~s~~dIs 1237 (1351)
.+.+++.... .....+|.++|+.... .....| .|++... .++.|.++|+||+|.+++.+.......-.
T Consensus 149 ~~~~~l~yp~------~~~~~tf~~~Le~sl~~e~~~~a~C~~C~~~~~~~~~r~i~~LPpVL~In~~~~~~~~~w~~~~ 222 (295)
T PF13423_consen 149 TLVLDLPYPP------SNSNVTFSQVLEHSLNREQQTRAWCEKCNKYQPTEQRRTIRSLPPVLSINLNRYSEEEFWPKKN 222 (295)
T ss_pred eeeeeccCCC------CCccchHHHHHHHHHhhcccccccccccccccceeeeeeccCCCcEEEEEccCCCccccccccc
Confidence 2333332211 1123689999987422 234679 9988654 56679999999999999987531110000
Q ss_pred ceeeccCcccccccccc--------CCCCCceEEEEEEEEEeC---CCCeEEEEEEecC-CCCCEEEeeCCee
Q 000686 1238 TTLSALSNELDLSKLFQ--------GYLPDYTYFVVSMVCFCK---DRQHSVCFLYDDQ-HDEHYVQHSDSNV 1298 (1351)
Q Consensus 1238 k~l~si~~~LDLs~~y~--------gld~~~~Y~LvAVV~H~g---eGGHY~AyvR~~~-~~g~Wy~FDDs~V 1298 (1351)
...+.|+..+++..+.. +.....+|.|.|+|||.| ++||||||+|-.. .+.+||+|||-.|
T Consensus 223 ~~~~~ip~~i~~~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~~~~HlVs~vrv~~~~~~~W~lFNDflV 295 (295)
T PF13423_consen 223 WLKIWIPPSINLPHFIADDSQSDLEGESGIFKYELRSMVCHIGDSIESGHLVSLVRVGPSDDSQWYLFNDFLV 295 (295)
T ss_pred CCceecceeeeccccccccccccccCCCCceEEEEEEEEEEecCCCCCCceEEEEEcCCCCCCcEEEECcEeC
Confidence 12233444555554321 122346999999999997 5799999999641 1379999999765
No 36
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=7.8e-25 Score=256.68 Aligned_cols=281 Identities=13% Similarity=0.163 Sum_probs=198.0
Q ss_pred cccCcccccCCCChHHHHHHHHhhCcHHHHHHHhcCCCccccCCCCchHHHHHHHHHHHhcCCCCcChHHHHHHHHhhcc
Q 000686 1003 NVLGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKHDGNPCIVCAFFDICAAKNRGEAVDPTELRIALSTYYC 1082 (1351)
Q Consensus 1003 ~~~~~GL~Nl~GTCYLNSILQ~L~hip~FRe~LLs~~~~~h~~~~~pcV~caL~~LF~s~~~~~~vsP~~Lr~aL~k~~p 1082 (1351)
+....||.|..-|||||+.+|+|+..|.|++.+.... ..++-.+.|.+.+++..
T Consensus 84 ~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts~-------------------------~~~~et~dlt~sfgw~s- 137 (1203)
T KOG4598|consen 84 GHRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTSE-------------------------NDSLETKDLTQSFGWTS- 137 (1203)
T ss_pred CcceEeehhhHHHHHHHHHhhhhccChhhhhhhhCCC-------------------------cccccchhhHhhcCCCc-
Confidence 4467899999559999999999999999998876321 23445556767776543
Q ss_pred CCccccccccccHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCccccccceeEEEeeeeeccCCCCccccc-c
Q 000686 1083 NQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRSGYQ-K 1161 (1351)
Q Consensus 1083 ~~~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~s~~eSE~~~~~~~~c~~~~cIVh~LFgG~L~s~I~C~~Cg~~S~~~-~ 1161 (1351)
. ...+|||.||+.+.++|.|.-. |..++..-+|..++.|.+..-+.|..||..+... -
T Consensus 138 -~---ea~~qhdiqelcr~mfdalehk-----------------~k~t~~~~li~~ly~g~m~d~v~cl~c~~e~~~~d~ 196 (1203)
T KOG4598|consen 138 -N---EAYDQHDVQELCRLMFDALEHK-----------------WKGTEHEKLIQDLYRGTMEDFVACLKCGRESVKTDY 196 (1203)
T ss_pred -c---hhhhhhhHHHHHHHHHHHHHhh-----------------hcCchHHHHHHHHhcchHHHHHHHHHcCccccccce
Confidence 1 2358999999999999999743 4445567799999999999999999999998843 4
Q ss_pred cceeeeecccchhhhhcccccccCHHHHHHHhc------CCCcccc-cCCCcce--EEEEEecCCceEEEEEEeecCC-C
Q 000686 1162 CTYLSFGISANNLRSLKNEHMDMSSKKVLELMG------LGEQMTC-GCGQLNS--IYHSLWRLPHVFVSVIDWQRGD-E 1231 (1351)
Q Consensus 1162 F~dLsl~I~a~slr~~k~~~~~~SF~elLk~~~------~~d~~~C-~Cgkk~~--kq~~I~rlP~VLtIhLkRFs~~-~ 1231 (1351)
|.++-+.+-+ +.. ...-.+.+++|+.+. .+++|.| +|+++.. |-+.|..+|.+||||||||... .
T Consensus 197 fld~pl~v~p--fg~---~~ay~sieeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~ 271 (1203)
T KOG4598|consen 197 FLDLPLAVKP--FGA---IHAYKSVEEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYN 271 (1203)
T ss_pred eecccccccC--Ccc---hhhhhhHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceeeEEeeecccccch
Confidence 5544333322 211 122357888988864 2469999 9998874 6778999999999999999642 1
Q ss_pred cccccccee--eccCcccccccccc-----C---------C---------------------------------------
Q 000686 1232 SSEDISTTL--SALSNELDLSKLFQ-----G---------Y--------------------------------------- 1256 (1351)
Q Consensus 1232 s~~dIsk~l--~si~~~LDLs~~y~-----g---------l--------------------------------------- 1256 (1351)
+--.| ++- ..||..|||..|.. + .
T Consensus 272 tmhri-klnd~~tfp~~l~ln~~in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~n~~~g 350 (1203)
T KOG4598|consen 272 TMHRI-KLNDKMTFPDVLDLNDYVNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQSPNRYQGSENVCVG 350 (1203)
T ss_pred heeee-eecccccCcccccHHHhhhhccCCcchhHhhhcccccccccccccccCCCCcccCcccccCcccccCccccccC
Confidence 11111 111 23455677765421 0 0
Q ss_pred -C-------------CCceEEEEEEEEEeC--CCCeEEEEEEecCCCCCEEEeeCCeeeEcCchhhhhhccC-ccccccc
Q 000686 1257 -L-------------PDYTYFVVSMVCFCK--DRQHSVCFLYDDQHDEHYVQHSDSNVEAYSEVNILATDDN-HSETLDM 1319 (1351)
Q Consensus 1257 -d-------------~~~~Y~LvAVV~H~g--eGGHY~AyvR~~~~~g~Wy~FDDs~Vt~VssWe~Vlsk~~-~s~~~p~ 1319 (1351)
+ ....|+|++|.+|+| .||||+||+++. .+++||.|||.+|+.+.. .++..-.. +.+.+ +
T Consensus 351 ~~~~~~~~~~~~~~sg~~~yelf~imihsg~a~gghy~ayik~~-d~~~w~~fnd~~v~~~t~-~~i~~sfgg~~~~~-~ 427 (1203)
T KOG4598|consen 351 QPIDHAAVDDIVKTSGDNVYELFSVMVHSGNAAGGHYFAYIKNL-DQDRWYVFNDTRVDFATP-LEIEKSFGGHPSGW-N 427 (1203)
T ss_pred CcCchhhhhhHhhcCCccHHHhhhhheecCCCCCceeeeeeccc-CcCceEEecCccccccCH-HHHHHhhCCCCCCc-c
Confidence 0 024799999999998 789999999998 999999999999999876 33322111 11122 2
Q ss_pred ccccceEEEEEecCCCCccc
Q 000686 1320 MISFQRLIGLKQDHDGSRLA 1339 (1351)
Q Consensus 1320 vl~~QpYLLFYq~~~~tp~~ 1339 (1351)
-..-.+|+|.|.+.+..+-+
T Consensus 428 ~s~tnaymlmyr~id~krn~ 447 (1203)
T KOG4598|consen 428 QSNTNAYMLMYRRIDPKRNA 447 (1203)
T ss_pred ccCcchhhhhhhhcCccccc
Confidence 23456899999988765533
No 37
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=3.4e-22 Score=243.65 Aligned_cols=295 Identities=18% Similarity=0.204 Sum_probs=203.2
Q ss_pred CcccCcccccCCCChHHH--HHHHHhhCcHHHHHHHhcCCCccccC-CCCchHHHHHHHHHH----HhcCCCCcChHHHH
Q 000686 1002 VNVLGTGLGKEAANNFLY--MIIQSLWNLREFQEECKKKLDEVQKH-DGNPCIVCAFFDICA----AKNRGEAVDPTELR 1074 (1351)
Q Consensus 1002 ~~~~~~GL~Nl~GTCYLN--SILQ~L~hip~FRe~LLs~~~~~h~~-~~~pcV~caL~~LF~----s~~~~~~vsP~~Lr 1074 (1351)
.+....|..|.+++|+-| ++.|.+.-...+++..+......... ...--+...+.++|. .......+.|..++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~~~~ 307 (587)
T KOG1864|consen 228 ANERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLKRSYIIKEELLTCLLDLFSSISSRKKLVGRISPTRFI 307 (587)
T ss_pred ccccccCccccCccccccchhhHHHHHhhhhhcccccchhhcccchhhhhHHHHHHhhhhccchhhhcccccccCcchhh
Confidence 334667888886699999 99999999888885444332110000 011123333445552 12255678899998
Q ss_pred HHHHhhccCCccccccccccHHHHHHHHHHHHHHHhccCCCCC----C---Cccc---cccccccC-----CCccccccc
Q 000686 1075 IALSTYYCNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDD----K---PEDM---YKDRLHCV-----DSNCLVHRI 1139 (1351)
Q Consensus 1075 ~aL~k~~p~~~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~s~~----e---SE~~---~~~~~~c~-----~~~cIVh~L 1139 (1351)
..+.+.. ..|..++|||||||+.++++.+++.+....... . ++.+ ...+|.+. ....+++.+
T Consensus 308 ~~~~~~~---~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~v~~l 384 (587)
T KOG1864|consen 308 SDLIKEN---ELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKSLRENWVSKL 384 (587)
T ss_pred hhhhhcC---CccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccccccccchhHHHHh
Confidence 8887653 679999999999999999999998876543100 1 1111 12233332 256889999
Q ss_pred eeEEEeeeeeccCCCCccccc-ccceeeeecccchhhhhcccccccCHHHHHHHhc------CCCcccc-cCCCcce--E
Q 000686 1140 FGMDIFESIECINCHMRSGYQ-KCTYLSFGISANNLRSLKNEHMDMSSKKVLELMG------LGEQMTC-GCGQLNS--I 1209 (1351)
Q Consensus 1140 FgG~L~s~I~C~~Cg~~S~~~-~F~dLsl~I~a~slr~~k~~~~~~SF~elLk~~~------~~d~~~C-~Cgkk~~--k 1209 (1351)
|.|.+..+..|.+|+..+..+ .|.|+.+.+... ...+...+++.+. .++.|+| +|...+. +
T Consensus 385 f~g~l~~et~Clsc~t~T~~de~f~D~~~~v~~d---------e~~si~~~l~~~~~~e~l~g~nky~c~~c~s~qeae~ 455 (587)
T KOG1864|consen 385 FQGILTNETRCLSCETITSRDEGFLDLSVAVEID---------ENTSITNLLKSFSSTETLSGENKYSCENCCSLQEAER 455 (587)
T ss_pred hcCeeeeeeeeccccccccccccccccceecccc---------ccccHHHHHHHhcchhhccCCCcccccccCchhhHHH
Confidence 999999999999999988765 789998877643 1234555655542 3468999 8877664 5
Q ss_pred EEEEecCCceEEEEEEeecCCCccccccceeeccCccccccccccC---CCCCceEEEEEEEEEeC---CCCeEEEEEEe
Q 000686 1210 YHSLWRLPHVFVSVIDWQRGDESSEDISTTLSALSNELDLSKLFQG---YLPDYTYFVVSMVCFCK---DRQHSVCFLYD 1283 (1351)
Q Consensus 1210 q~~I~rlP~VLtIhLkRFs~~~s~~dIsk~l~si~~~LDLs~~y~g---ld~~~~Y~LvAVV~H~g---eGGHY~AyvR~ 1283 (1351)
++.|..+|.+|+|||+||+..+....-.+++..+.+|+-+...... ..+...|+|+|||||.| +.|||+||+|.
T Consensus 456 ~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~~v~~plel~l~~~~~~~~~~~~~Y~L~avVvH~G~~p~~GHYia~~r~ 535 (587)
T KOG1864|consen 456 RLKIKKLPYVLTLHLKRFKYSEQQNRYTKLLYRVVFPLELRLKDTLKDDNNPDRKYDLVAVVVHLGSTPNRGHYVAYVKS 535 (587)
T ss_pred hccccCCcceeeeehhccccccccccccccccccccccceeeccccccccCccceeeEEEEEEeccCCCCCcceEEEEee
Confidence 6778999999999999998654332223566666677666532211 11236899999999998 56999999996
Q ss_pred cCCCCCEEEeeCCeeeEcCchhhhhhcc
Q 000686 1284 DQHDEHYVQHSDSNVEAYSEVNILATDD 1311 (1351)
Q Consensus 1284 ~~~~g~Wy~FDDs~Vt~VssWe~Vlsk~ 1311 (1351)
. ...|+.|||..|+.++. +.|....
T Consensus 536 ~--~~nWl~fdD~~V~~~s~-~~v~~~~ 560 (587)
T KOG1864|consen 536 L--DFNWLLFDDDNVEPISE-EPVSEFT 560 (587)
T ss_pred C--CCCceecccccccccCc-chhhhcc
Confidence 3 33399999999999875 7776543
No 38
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.86 E-value=2.5e-21 Score=214.61 Aligned_cols=181 Identities=12% Similarity=0.136 Sum_probs=115.6
Q ss_pred ccccHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCccccccceeEEEeeeeeccCCCCcccccccceeeeecc
Q 000686 1091 QVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRSGYQKCTYLSFGIS 1170 (1351)
Q Consensus 1091 ~QqDA~EFL~~LLd~LH~~l~~~~s~~eSE~~~~~~~~c~~~~cIVh~LFgG~L~s~I~C~~Cg~~S~~~~F~dLsl~I~ 1170 (1351)
.|+|+.||+..|++.|..-+... .-++|+|.-..+--+ ..++ .. .+.++|+
T Consensus 22 ~q~D~~e~~~~l~~~~~~~~~~~----------------------~~~~~~~g~~~~~~~---~~~~--e~--~l~l~ip 72 (241)
T cd02670 22 EQQDPEEFFNFITDKLLMPLLEP----------------------KVDIIHGGKKDQDDD---KLVN--ER--LLQIPVP 72 (241)
T ss_pred HhcCHHHHHHHHHHHHhhhhhhH----------------------HHHHHhcCccccccc---cccc--cc--eEEeecc
Confidence 68999999999999997533321 124444422211000 1111 12 3444554
Q ss_pred cchhhhhcccccccCHHHHHHHhcCCCcccccCCCcceEEEEEecCCceEEEEEEeecCCCc-cccccceeeccCccccc
Q 000686 1171 ANNLRSLKNEHMDMSSKKVLELMGLGEQMTCGCGQLNSIYHSLWRLPHVFVSVIDWQRGDES-SEDISTTLSALSNELDL 1249 (1351)
Q Consensus 1171 a~slr~~k~~~~~~SF~elLk~~~~~d~~~C~Cgkk~~kq~~I~rlP~VLtIhLkRFs~~~s-~~dIsk~l~si~~~LDL 1249 (1351)
...- ....++.++|+.+...+. |.++|+||+||||||..... ..++ ...+.+|..|||
T Consensus 73 ~~~~------~~~~tLedcLe~~~~~e~--------------i~~lP~vLiIhLKRF~~~~~~~~Kl-~~~I~fP~~Ldl 131 (241)
T cd02670 73 DDDD------GGGITLEQCLEQYFNNSV--------------FAKAPSCLIICLKRYGKTEGKAQKM-FKKILIPDEIDI 131 (241)
T ss_pred cCCC------CCcCCHHHHHHHHhchhh--------------hhhCCCeEEEEEEccccCCCcceeC-CcEECCCCcCCc
Confidence 3210 123688999977533211 89999999999999986431 1222 244567778999
Q ss_pred cccccCC-----------------------CCCceEEEEEEEEEeC---CCCeEEEEEEecCC-----------CCCEEE
Q 000686 1250 SKLFQGY-----------------------LPDYTYFVVSMVCFCK---DRQHSVCFLYDDQH-----------DEHYVQ 1292 (1351)
Q Consensus 1250 s~~y~gl-----------------------d~~~~Y~LvAVV~H~g---eGGHY~AyvR~~~~-----------~g~Wy~ 1292 (1351)
+++..+. .....|.|+|||+|+| ++||||||||+. . ++.||.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~-~~~~~~~~~~~~~~~W~~ 210 (241)
T cd02670 132 PDFVADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYG-SYSLTETDNEAYNAQWVF 210 (241)
T ss_pred hhhcccccccccccccccccccccccccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECC-cccccccccCCCCCeEEE
Confidence 8875321 1235899999999998 579999999986 3 389999
Q ss_pred eeCCeeeEcCchhhhhhccCcccccc-cccccceEEEEEe
Q 000686 1293 HSDSNVEAYSEVNILATDDNHSETLD-MMISFQRLIGLKQ 1331 (1351)
Q Consensus 1293 FDDs~Vt~VssWe~Vlsk~~~s~~~p-~vl~~QpYLLFYq 1331 (1351)
|||..|+.+.. ... . +| .+...+|||||||
T Consensus 211 FDD~~v~~~~~-~~~-~-------~~~~~~~~~aYmLFYq 241 (241)
T cd02670 211 FDDMADRDGVS-NGF-N-------IPAARLLEDPYMLFYQ 241 (241)
T ss_pred ecCcccccccc-ccc-c-------cchhcccCCceEEEeC
Confidence 99999988643 110 0 11 2445789999997
No 39
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.6e-21 Score=225.97 Aligned_cols=301 Identities=14% Similarity=0.076 Sum_probs=206.0
Q ss_pred cCcccCcccccCCCChHHHHHHHHhhCcHHHHHHHhcCCCccccCC---CCchHHHHHHHHHHHhcCCCCcChHHHHHHH
Q 000686 1001 NVNVLGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKHD---GNPCIVCAFFDICAAKNRGEAVDPTELRIAL 1077 (1351)
Q Consensus 1001 g~~~~~~GL~Nl~GTCYLNSILQ~L~hip~FRe~LLs~~~~~h~~~---~~pcV~caL~~LF~s~~~~~~vsP~~Lr~aL 1077 (1351)
.....++||.|+|||||||+++|||-.+|+++..+........... ...-+.-+++.+|..+.+.+++.|..+...+
T Consensus 100 ~~~~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~~~v~pi~llqtl 179 (473)
T KOG1872|consen 100 AALPLPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRRRISIETRTCFRPLCEKGAVAPINLLQTL 179 (473)
T ss_pred hhccCCccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhhhHHHHHHHHHHhhhccCCcchHHHHHHH
Confidence 4456788999997799999999999999999988766542111110 0125788999999988855999999999999
Q ss_pred HhhccCCccccc------cccccHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCccccccceeEEEeeeeecc
Q 000686 1078 STYYCNQNNFQE------GQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECI 1151 (1351)
Q Consensus 1078 ~k~~p~~~~F~~------g~QqDA~EFL~~LLd~LH~~l~~~~s~~eSE~~~~~~~~c~~~~cIVh~LFgG~L~s~I~C~ 1151 (1351)
.+.+| .|.. ++||||.|++..++-.+|+.+..... -+.....+..+|+..+..++.|.
T Consensus 180 ~~~~P---qfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~-------------~~~~~~~~d~~f~~~~~~t~~~~ 243 (473)
T KOG1872|consen 180 SSQYP---QFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATE-------------APCLEAEAAAGFGAEFSTTMSCS 243 (473)
T ss_pred HHHhH---HHHHHhhhhhHHHHHHhHhHHHhhhheecccccccc-------------ccchhHHHHHhhccccccceeec
Confidence 99884 5544 67999999999999999987654421 11246778999999999999998
Q ss_pred CCCCccc---ccccceeeeecccchhhhhcccccccCHHHHHHHhcCCCcccccCCCcceEEEEEecCCceEEEEEEeec
Q 000686 1152 NCHMRSG---YQKCTYLSFGISANNLRSLKNEHMDMSSKKVLELMGLGEQMTCGCGQLNSIYHSLWRLPHVFVSVIDWQR 1228 (1351)
Q Consensus 1152 ~Cg~~S~---~~~F~dLsl~I~a~slr~~k~~~~~~SF~elLk~~~~~d~~~C~Cgkk~~kq~~I~rlP~VLtIhLkRFs 1228 (1351)
.=...+. .+.|.+|.+-|.-.- ..++. .....+.+.+... .+.. |-.....+...|+++|.+||+++.||.
T Consensus 244 e~e~~~~~~~~E~~~~L~c~i~~~~-~~~k~-Gl~~~~~e~~~K~--s~~l--gr~a~y~k~~~isrlP~ylTvq~vrf~ 317 (473)
T KOG1872|consen 244 EGEDEGGGAGRELVDQLKCIINKTV-HDMRF-GLKSGLSEEIQKI--SSIL--GRPAAYQKVMYISRLPEYLTVQEVRFF 317 (473)
T ss_pred cCcccccccccccccccceEEeeee-chhhh-hhhhhhhhhhhcc--Cccc--CCChHHHHHhHhhcCcccceEEEEEEE
Confidence 7776544 335666666555421 11110 0011222222111 1111 222223355679999999999999996
Q ss_pred CCCccccccceeeccCcccccccc--ccC----------------------C---------C------------------
Q 000686 1229 GDESSEDISTTLSALSNELDLSKL--FQG----------------------Y---------L------------------ 1257 (1351)
Q Consensus 1229 ~~~s~~dIsk~l~si~~~LDLs~~--y~g----------------------l---------d------------------ 1257 (1351)
.........+++.++.||+|+..+ +.. . +
T Consensus 318 ~k~k~~~~akil~~V~fP~~ld~~d~ct~el~~k~~~~r~k~r~~edkk~~~~~~~k~~~~~~~~~~~~~e~~~~~~~~~ 397 (473)
T KOG1872|consen 318 SKAKIMVVAKILNAVNFPKDLDQQDLCTPELKKKLLCRRKKHRKVEDKKKEEDVMPKVKGAQERLKEVPLEGMYNKSGGK 397 (473)
T ss_pred eccccchHHHHHHhccChhhhhHHHhhCHHhhcCccchHHHHHHHHhcCCchhhcccccCcCcccccccccchhcccccc
Confidence 544434346788888898887632 210 0 0
Q ss_pred -C-CceEEEEEEEEEeC---CCCeEEEEEEecCCCCCEEEeeCCeeeEcCchhhhhhccCcccccccccccceEEEEEec
Q 000686 1258 -P-DYTYFVVSMVCFCK---DRQHSVCFLYDDQHDEHYVQHSDSNVEAYSEVNILATDDNHSETLDMMISFQRLIGLKQD 1332 (1351)
Q Consensus 1258 -~-~~~Y~LvAVV~H~g---eGGHY~AyvR~~~~~g~Wy~FDDs~Vt~VssWe~Vlsk~~~s~~~p~vl~~QpYLLFYq~ 1332 (1351)
. ...|+|.|||.|.| .+|||++++|. .++.|++|||+.|..|.. +..+. .+++.. --.+|||.|..
T Consensus 398 s~~~g~y~l~~vithkgrss~sghy~aw~r~--s~~~w~~fdd~~vs~v~~-e~i~~---lsgggd---~~~ayvllyk~ 468 (473)
T KOG1872|consen 398 SRNSGLYDLQLVITHKGRSSKSGHYVAWNRV--SEDKWGHFDDDMVSFVLG-ETILS---LSGGGD---WHSAYVLLYKA 468 (473)
T ss_pred ccccceeeeeEeeeccccccCCCcceEEEec--cCCceeeccccccccccc-cceee---ecCCCc---cchhhheeecc
Confidence 0 13699999999998 67999999998 577999999999999864 33332 122221 23689999975
No 40
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=7.6e-19 Score=199.58 Aligned_cols=310 Identities=17% Similarity=0.136 Sum_probs=194.2
Q ss_pred cCcccCcccccCCCChHHHHHHHHhhCcHHHHHHHhcCCCc--cccCCCCchHHHHHHHHHHHhc---------------
Q 000686 1001 NVNVLGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDE--VQKHDGNPCIVCAFFDICAAKN--------------- 1063 (1351)
Q Consensus 1001 g~~~~~~GL~Nl~GTCYLNSILQ~L~hip~FRe~LLs~~~~--~h~~~~~pcV~caL~~LF~s~~--------------- 1063 (1351)
.++.-++|+.|-+|-||||||||+|..+++|-+-+-...-. ...+ +....+.|+..+...+.
T Consensus 23 p~~i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~~~-~stp~lda~~~~~~df~n~~~~k~~r~N~~~~ 101 (420)
T KOG1871|consen 23 PVPIDPRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGTVKE-GSTPLLDASRPASSDFNNDSDAKLPRKNSLRV 101 (420)
T ss_pred ccccCCccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCceec-ccchhHHHHHHHHhhccccchhhhhhhccCCc
Confidence 35678999999977999999999999999999877654311 1111 11123333333332111
Q ss_pred ---------------CCCCcChHHHHHHHHhhccCCccccccccccHHHHHHHHHHHHHHHhccCCC-------C-----
Q 000686 1064 ---------------RGEAVDPTELRIALSTYYCNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNS-------D----- 1116 (1351)
Q Consensus 1064 ---------------~~~~vsP~~Lr~aL~k~~p~~~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~s-------~----- 1116 (1351)
++.++.|..+...+... +....-+.|.|+||.||+..+||.||+++..... +
T Consensus 102 ~~~~~~~ses~~~d~~~dav~~d~~~~~l~t~-~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~ 180 (420)
T KOG1871|consen 102 PEHVVEKSESNKSDLQGDAVKPDPIYLDLLTM-SRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRG 180 (420)
T ss_pred cccccchhhhhhhcccCccccCCchhhhcccC-CchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCcccccccc
Confidence 33445554444344322 2222335689999999999999999999765431 0
Q ss_pred --------C--CCcccccc--c-cc-c--------C----CCccccccceeEEEeeeeeccCCCCcccccccceeeeecc
Q 000686 1117 --------D--KPEDMYKD--R-LH-C--------V----DSNCLVHRIFGMDIFESIECINCHMRSGYQKCTYLSFGIS 1170 (1351)
Q Consensus 1117 --------~--eSE~~~~~--~-~~-c--------~----~~~cIVh~LFgG~L~s~I~C~~Cg~~S~~~~F~dLsl~I~ 1170 (1351)
+ +++....+ . |. | + -..+.++++|||++++.+.=.+-+-.-.-.||..+.++|.
T Consensus 181 ~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~nkeS~tlqPF~tlqldiq 260 (420)
T KOG1871|consen 181 LINNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPSNKESATLQPFFTLQLDIQ 260 (420)
T ss_pred cccccccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceeccccccccccCccceeeeeee
Confidence 0 00111100 0 10 0 0 1356889999999999877655444323459999999997
Q ss_pred cchhhhhcccccccCHHHHHHHhcCCC---cccccCCCcc--eEEEEEecCCceEEEEEEeecCC--Cccccccceeecc
Q 000686 1171 ANNLRSLKNEHMDMSSKKVLELMGLGE---QMTCGCGQLN--SIYHSLWRLPHVFVSVIDWQRGD--ESSEDISTTLSAL 1243 (1351)
Q Consensus 1171 a~slr~~k~~~~~~SF~elLk~~~~~d---~~~C~Cgkk~--~kq~~I~rlP~VLtIhLkRFs~~--~s~~dIsk~l~si 1243 (1351)
...+.. ..+++..+...+ .++-+-+..+ .++..|.++|+||++||+||... ..-.++.+. ..+
T Consensus 261 ~~~i~s---------v~~ales~~~re~lp~~st~s~~eV~~s~q~~leklp~vlilhlkrF~ye~tgg~~k~~K~-i~~ 330 (420)
T KOG1871|consen 261 SEKIHS---------VQDALESLVARESLPGYSTKSGQEVEASSQTTLEKLPPVLILHLKRFVYEKTGGARKLGKK-IEY 330 (420)
T ss_pred ccccCC---------HHHHhhccChhhcccceecCCCCeechhhhhhHhhcchhhhhhhhHHHHHhccchhhhchh-hhc
Confidence 654443 233333322111 1111212222 35778999999999999999532 111122221 245
Q ss_pred Ccccccccccc--CCC-----CCceEEEEEEEEEeC---CCCeEEEEEEecCCCCCEEEeeCCeeeEcCchhhhhhccCc
Q 000686 1244 SNELDLSKLFQ--GYL-----PDYTYFVVSMVCFCK---DRQHSVCFLYDDQHDEHYVQHSDSNVEAYSEVNILATDDNH 1313 (1351)
Q Consensus 1244 ~~~LDLs~~y~--gld-----~~~~Y~LvAVV~H~g---eGGHY~AyvR~~~~~g~Wy~FDDs~Vt~VssWe~Vlsk~~~ 1313 (1351)
++++.++.-+. ++- -...|.|++||.|.| .+|||+.-+.+. ..+.|+.+||..|+.+.. ++|+. .
T Consensus 331 ~~~l~i~~~~~s~gvk~~~~~~~~~yks~~vvyhtgtsatvghYl~dv~~s-~~~gw~rIDD~~i~~v~q-~dv~~--~- 405 (420)
T KOG1871|consen 331 PWTLKISKNCFSQGLKIRILIATRPYKSLAVVYHTGTSATVGHYLEDVSRS-VPSGWQRIDDALILFVAQ-EDVEK--V- 405 (420)
T ss_pred cceeeechhhhccccchhhhccccccceEEEEEecccccccCceEEeeeec-ccCceeEeccceeeeccH-hhhcc--c-
Confidence 66677664322 222 134799999999997 689999999988 899999999999999976 78876 1
Q ss_pred ccccccccccceEEEEEecC
Q 000686 1314 SETLDMMISFQRLIGLKQDH 1333 (1351)
Q Consensus 1314 s~~~p~vl~~QpYLLFYq~~ 1333 (1351)
-..-.||+|+|++-
T Consensus 406 ------t~~r~~yllyY~~~ 419 (420)
T KOG1871|consen 406 ------TGSRTPYLLYYIEA 419 (420)
T ss_pred ------cCccchheeEeeec
Confidence 22356999999874
No 41
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.76 E-value=6.2e-18 Score=191.35 Aligned_cols=273 Identities=16% Similarity=0.173 Sum_probs=197.4
Q ss_pred cCcccccCCCChHHHHHHHHhhCcHHHHHHHhcCCCccccCCCCchHHHHHHHHH-HHhc---CCCCcChHHHHHHHHhh
Q 000686 1005 LGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKHDGNPCIVCAFFDIC-AAKN---RGEAVDPTELRIALSTY 1080 (1351)
Q Consensus 1005 ~~~GL~Nl~GTCYLNSILQ~L~hip~FRe~LLs~~~~~h~~~~~pcV~caL~~LF-~s~~---~~~~vsP~~Lr~aL~k~ 1080 (1351)
+..||.|+..+=|.|++||+|.|.+++|++|+...-+.+.+. -++..|..+. +-|. -...|+|.++..++...
T Consensus 133 G~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n~~d~~~---~lv~rl~~l~rklw~~r~fk~hvSphe~lqaV~~~ 209 (442)
T KOG2026|consen 133 GFVGLNNIKANDYANAVLQALSHVVPLRNYFLLEENYFDNLT---ELVQRLGELIRKLWNPRNFKGHVSPHEFLQAVMKL 209 (442)
T ss_pred eeeccchhhhHHHHHHHHHHHhccchhhhhhcccccccchhH---HHHHHHHHHHHHhcChhhhcccCCHHHHHHHHHHH
Confidence 458999995599999999999999999999998753222221 1233344444 2344 45779999999999876
Q ss_pred ccCCccccccccccHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCccccccceeEEEeeeeeccCCCCccc--
Q 000686 1081 YCNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRSG-- 1158 (1351)
Q Consensus 1081 ~p~~~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~s~~eSE~~~~~~~~c~~~~cIVh~LFgG~L~s~I~C~~Cg~~S~-- 1158 (1351)
. ...|+.++|.|+.||+..+|+.||.++.+.. +..+|||..|.|.++-...=.. .+..+
T Consensus 210 s--~k~f~i~~q~DpveFlswllntlhs~l~~~k----------------~~~SIi~~~fqG~~ri~k~~~~-~~~~~~~ 270 (442)
T KOG2026|consen 210 S--KKRFRIGQQSDPVEFLSWLLNTLHSDLRGSK----------------KASSIIHKSFQGEVRIVKEKQG-EASENEN 270 (442)
T ss_pred h--hhheecCCCCCHHHHHHHHHHHHHHHhCCCC----------------CchhHhhHhhcceEEeeeeccc-ccccccc
Confidence 4 4689999999999999999999999887543 2368999999999874322221 11111
Q ss_pred ----ccccceeeeecccchhh-hh--cccccccCHHHHHHHhcCCC--cccccCCCcceEEEEEecCCceEEEEEEeecC
Q 000686 1159 ----YQKCTYLSFGISANNLR-SL--KNEHMDMSSKKVLELMGLGE--QMTCGCGQLNSIYHSLWRLPHVFVSVIDWQRG 1229 (1351)
Q Consensus 1159 ----~~~F~dLsl~I~a~slr-~~--k~~~~~~SF~elLk~~~~~d--~~~C~Cgkk~~kq~~I~rlP~VLtIhLkRFs~ 1229 (1351)
..||.-|.+++|+..+- +. +...++..+.++|+.+...- ++ . .-+-.++..+.++|++|++|++||..
T Consensus 271 ~~i~~~~Fl~LtLDLP~~plfkD~~e~niiPQV~l~~lL~Kf~g~t~~e~--~-~~~~~~rf~l~k~P~ylifh~~rF~k 347 (442)
T KOG2026|consen 271 KEISVMPFLYLTLDLPPPPLFKDVMEKNIIPQVALFDLLKKFDGETVTEV--V-TPKLAMRFRLTKLPRYLIFHMKRFKK 347 (442)
T ss_pred ceEEEEeeEEEEecCCCCCcccchhhhcccccchHHHHHHHhcCceeeee--c-chhhhhheeeecCCceEEEEeeeccc
Confidence 23799999999886542 22 12456788999998874321 11 0 00011567799999999999999975
Q ss_pred CCccccccceeeccC-ccccccccc----cCCCCCceEEEEEEEEEeCCCCeEEEEEEecCCCCCEEEeeCCeeeEcCc
Q 000686 1230 DESSEDISTTLSALS-NELDLSKLF----QGYLPDYTYFVVSMVCFCKDRQHSVCFLYDDQHDEHYVQHSDSNVEAYSE 1303 (1351)
Q Consensus 1230 ~~s~~dIsk~l~si~-~~LDLs~~y----~gld~~~~Y~LvAVV~H~geGGHY~AyvR~~~~~g~Wy~FDDs~Vt~Vss 1303 (1351)
+...+.-..|+..++ .++|+.++. ....+-+.|.|+|-+.|--+-|||..++++. ..++||..+|-.|+...+
T Consensus 348 Nn~f~ekNpTl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~i~~~e~~~~riqi~~~-~s~kW~eiqdl~v~e~~~ 425 (442)
T KOG2026|consen 348 NNFFKEKNPTLVEFPYSEVDILHVLDRLKAVNHKVTQYSLVANAIHEDEDGNFRIQIYDN-SSEKWYEIQDLHVTERLP 425 (442)
T ss_pred cCcccccCCceeeccCCccchhhhhhhcccccCccccccchhhhhcCcccCceEEEEEeC-CCcceEEecccchhhhhh
Confidence 444444467888888 678776542 1222347899999999987789999999998 999999999999998754
No 42
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.36 E-value=5.5e-12 Score=154.54 Aligned_cols=307 Identities=16% Similarity=0.116 Sum_probs=178.7
Q ss_pred cCcccccCCCChHHHHHHHHhhCcHHHHHHHhcCCCccccCCCCchHHHHHHHHHHHhc--CCCCcChHHHHHHHHhhcc
Q 000686 1005 LGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKHDGNPCIVCAFFDICAAKN--RGEAVDPTELRIALSTYYC 1082 (1351)
Q Consensus 1005 ~~~GL~Nl~GTCYLNSILQ~L~hip~FRe~LLs~~~~~h~~~~~pcV~caL~~LF~s~~--~~~~vsP~~Lr~aL~k~~p 1082 (1351)
...||.--+-|-|-|++||.|+.+|++|..++. |.|..+.|+.|+|.=||.++. .+.+.....|..+|...-
T Consensus 498 ~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~-----H~C~~e~CL~CELGFLF~Ml~~S~G~~Cqa~NFlraf~t~~- 571 (1118)
T KOG1275|consen 498 TYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLR-----HICTKEFCLLCELGFLFTMLDSSTGDPCQANNFLRAFRTNP- 571 (1118)
T ss_pred eeeccCCCCchHHHHHHHHHHHhccHHHHHHHc-----CccchhHHHHHHHHHHHHHHhhhcCCccchhHHHHHHhhCh-
Confidence 456776553399999999999999999999986 467778899999999999987 666777778888876542
Q ss_pred CCcccccccccc--HHHHHHHHHHHHHHHhccCCC--------------CCCCccccccccccCCCccccccceeEEEee
Q 000686 1083 NQNNFQEGQVND--AYLFLLVIFKVLHVAFYAVNS--------------DDKPEDMYKDRLHCVDSNCLVHRIFGMDIFE 1146 (1351)
Q Consensus 1083 ~~~~F~~g~QqD--A~EFL~~LLd~LH~~l~~~~s--------------~~eSE~~~~~~~~c~~~~cIVh~LFgG~L~s 1146 (1351)
..... ++.-.| +.+.+. +.++-+......+ ...++. -.+...|.+....+.+.|+.....
T Consensus 572 ~a~~L-G~vl~d~~~~~~~~--~~~liq~~~~~~~set~~~~d~~~~~~~~~s~~-~~~~~~~vn~~~~l~q~F~~~~e~ 647 (1118)
T KOG1275|consen 572 EASAL-GLVLSDTQISGTVN--DDVLIQDAEGFISSETSRHLDCQDCRGLQQSES-VDGESFKVNYAPVLQQSFCQEIEK 647 (1118)
T ss_pred Hhhhh-cccccchhhccccc--hHHHhhhhhhccchhhhhhhhHHHhhhhhhhhc-ccCceeeecchhHHHHHhhhHHHH
Confidence 11111 111111 122111 1112111111100 000000 001122345567889999999999
Q ss_pred eeeccCCCCcccccccceeeeecccchhhhhcccccccCHHHHHHHhc-C--CCcccc-cCCCcce--EEEEEecCCceE
Q 000686 1147 SIECINCHMRSGYQKCTYLSFGISANNLRSLKNEHMDMSSKKVLELMG-L--GEQMTC-GCGQLNS--IYHSLWRLPHVF 1220 (1351)
Q Consensus 1147 ~I~C~~Cg~~S~~~~F~dLsl~I~a~slr~~k~~~~~~SF~elLk~~~-~--~d~~~C-~Cgkk~~--kq~~I~rlP~VL 1220 (1351)
...|..||..+.... ..+.+++......-.+......-|.++|+... + +-+--| .|++... .+..+..+|.+|
T Consensus 648 ~~~Cg~C~~~~~~~k-~l~~~~lsyp~~~~id~~~~~~~F~~iL~R~l~l~kn~~~~C~~C~k~ep~~q~~~vr~LPd~L 726 (1118)
T KOG1275|consen 648 SLRCGECGDEKQKSK-SLLRKVLSYPNVLLIDTLAKSNNFVEILKRSLSLFKNKQAWCETCTKPEPTSQKKNVRSLPDCL 726 (1118)
T ss_pred hhhcccccchhhhhh-hhhheeecCCCccchhhcccccchHHHhhhhhhcccccccccccccCCCCcccccccccCccee
Confidence 999999998766443 22333332211110000112245778877642 1 123568 8988764 455799999999
Q ss_pred EEEEEeecCCCccccc----cceee--ccCccccccc----------c-------ccCCCCC--ceEEEEEEEEEeC---
Q 000686 1221 VSVIDWQRGDESSEDI----STTLS--ALSNELDLSK----------L-------FQGYLPD--YTYFVVSMVCFCK--- 1272 (1351)
Q Consensus 1221 tIhLkRFs~~~s~~dI----sk~l~--si~~~LDLs~----------~-------y~gld~~--~~Y~LvAVV~H~g--- 1272 (1351)
.|...-+.... .++ .+.+. .+|..+-+.. . ..+.+.. .+|.|.|||+|.+
T Consensus 727 ~in~~~~~~~~--~~~~a~q~~~~~~vWLP~~~~~~~~k~~~~~v~~~s~~~~~~~~~~d~~~~~vYeL~a~V~~I~d~~ 804 (1118)
T KOG1275|consen 727 SINTCLNVHEL--VDFWARQNKLLEDVWLPEWFHMIISKNKAQLVSTISDLDVSPLPDYDEPSAVVYELDAMVHAIGDNE 804 (1118)
T ss_pred eeeeeccchhh--hhhHHHhhccccccccchheeEEEecccceeeeeeccccCCCCccccCCceEEEEeeeEEEEeccCC
Confidence 99974332110 000 01111 1222221111 0 0112222 5899999999996
Q ss_pred CCCeEEEEEEec-------CCCCCEEEeeCCeeeEcCchhhhhhccCcccccccccccceEEEEEecC
Q 000686 1273 DRQHSVCFLYDD-------QHDEHYVQHSDSNVEAYSEVNILATDDNHSETLDMMISFQRLIGLKQDH 1333 (1351)
Q Consensus 1273 eGGHY~AyvR~~-------~~~g~Wy~FDDs~Vt~VssWe~Vlsk~~~s~~~p~vl~~QpYLLFYq~~ 1333 (1351)
+++|.+++++-. ..+.+||+|||--|++|+.-++|-= ...-=-|.||||-+.
T Consensus 805 ~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl~~---------~~~WKvP~Il~Y~d~ 863 (1118)
T KOG1275|consen 805 NEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEALHF---------DGPWKVPAILYYCDK 863 (1118)
T ss_pred CccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHheEe---------ccCccCcEEEEEecc
Confidence 569999999753 2447999999999999987443321 112235899999443
No 43
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=98.26 E-value=3.1e-06 Score=93.87 Aligned_cols=235 Identities=14% Similarity=0.165 Sum_probs=127.3
Q ss_pred ccCCCChHHHHHHHHhhCcHHHHHHHhcCCCccccCCCCchHHHHHHHHHHH----hc--CCCCcChHHHHHHHHhhccC
Q 000686 1010 GKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKHDGNPCIVCAFFDICAA----KN--RGEAVDPTELRIALSTYYCN 1083 (1351)
Q Consensus 1010 ~Nl~GTCYLNSILQ~L~hip~FRe~LLs~~~~~h~~~~~pcV~caL~~LF~s----~~--~~~~vsP~~Lr~aL~k~~p~ 1083 (1351)
+|..+.|+|.+||=+|.|+..+|+..-.... .+.+++..|..-+.+ .. +...+.+......=.
T Consensus 6 ~N~~aLCWLDciLsaLVh~~~Lk~~~~~~~~------~e~s~~~~L~~~Y~qa~~ll~~~q~~~~~~~~~~~~~~----- 74 (275)
T PF15499_consen 6 KNSNALCWLDCILSALVHLESLKNAVTELCS------KEESVFWRLFTKYNQANKLLHTCQLDGVKDDDCKKVPS----- 74 (275)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHhhhcc------ccccHHHHHHHHHHHHHHHHHhhhhcCCCCcccccCch-----
Confidence 4554499999999999999999988865321 122555544444421 11 122221111100000
Q ss_pred CccccccccccHHHHHHHHHHHHHHHhccCCCCCCCcccccc-ccccCCCccccccceeEEEeeeeeccCCCCccc-ccc
Q 000686 1084 QNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKD-RLHCVDSNCLVHRIFGMDIFESIECINCHMRSG-YQK 1161 (1351)
Q Consensus 1084 ~~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~s~~eSE~~~~~-~~~c~~~~cIVh~LFgG~L~s~I~C~~Cg~~S~-~~~ 1161 (1351)
..+.. .-.+-.|+=..|++.|+-.+.-.-.+.+| .-.. +.- -.-...+..+|...+.=...|..||+... +..
T Consensus 75 -~~l~~-ae~~Ln~vR~~iF~~LqPkL~C~LG~~ES--PVFAlPLL-Lk~d~~~E~lF~~sf~WeFeC~~Cg~~~~~R~~ 149 (275)
T PF15499_consen 75 -EILAK-AETCLNEVRMEIFIQLQPKLRCKLGDMES--PVFALPLL-LKLDPWIEKLFLYSFSWEFECSQCGHKYQNRCT 149 (275)
T ss_pred -HHHHH-HHHHHHHHHHHHHHHhCccCCCCCCCccC--cHHHhHHH-HhcchHHHhHhheeeEEEEEccccCChhhhhhe
Confidence 01100 00123334444455554333221122222 1000 000 01245668899999999999999998643 110
Q ss_pred cceeeeecccchhhhhcccccccCHHHHHHHh---cCCCcccc-cCCCcce-EEEEEecCCceEEEEEEeecCCCccccc
Q 000686 1162 CTYLSFGISANNLRSLKNEHMDMSSKKVLELM---GLGEQMTC-GCGQLNS-IYHSLWRLPHVFVSVIDWQRGDESSEDI 1236 (1351)
Q Consensus 1162 F~dLsl~I~a~slr~~k~~~~~~SF~elLk~~---~~~d~~~C-~Cgkk~~-kq~~I~rlP~VLtIhLkRFs~~~s~~dI 1236 (1351)
- .+ .+|+.++-.. ....-..| .|+.+.. .++.+.+.|+||++||.=-= ...
T Consensus 150 K-----~L--------------~TFtnv~pdwhPLnA~h~~pCn~C~~ksQ~rkMvlekv~~vfmLHFVeGL---P~n-- 205 (275)
T PF15499_consen 150 K-----TL--------------VTFTNVIPDWHPLNAVHFGPCNSCNSKSQRRKMVLEKVPPVFMLHFVEGL---PHN-- 205 (275)
T ss_pred e-----ee--------------cccCCCCCCCCcccccccCCCcccCChHHhHhhhhhcCchhhhhhhhccC---Ccc--
Confidence 0 00 1121111000 01123478 8988765 46789999999999973211 111
Q ss_pred cceeeccCccccccccccCCCCCceEEEEEEEEEeCCCCeEEEEEEecCCCCCEEEeeCCee
Q 000686 1237 STTLSALSNELDLSKLFQGYLPDYTYFVVSMVCFCKDRQHSVCFLYDDQHDEHYVQHSDSNV 1298 (1351)
Q Consensus 1237 sk~l~si~~~LDLs~~y~gld~~~~Y~LvAVV~H~geGGHY~AyvR~~~~~g~Wy~FDDs~V 1298 (1351)
|+.. |.-.-.+..|.+.+||-|.-+..|+++++++ .+|.|..|||-+-
T Consensus 206 -----------dl~~-ysF~feg~~Y~Vt~VIQY~~~~~HFvtWi~~--~dGsWLecDDLkg 253 (275)
T PF15499_consen 206 -----------DLQH-YSFHFEGCLYQVTSVIQYQANLNHFVTWIRD--SDGSWLECDDLKG 253 (275)
T ss_pred -----------CCCc-cceeecCeeEEEEEEEEEeccCceeEEEEEc--CCCCeEeeccCCC
Confidence 2221 2111135789999999999556999999998 5899999999764
No 44
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.80 E-value=0.01 Score=61.50 Aligned_cols=100 Identities=16% Similarity=-0.037 Sum_probs=89.4
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHH
Q 000686 22 GRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTII 101 (1351)
Q Consensus 22 ~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~ 101 (1351)
...+....++|++.+|+.....++...|..+.+|+..|.++..+.+- ..|+.++.+|..+.|+....
T Consensus 28 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~-------------~~A~~~y~~Al~l~p~~~~a 94 (144)
T PRK15359 28 YASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEY-------------TTAINFYGHALMLDASHPEP 94 (144)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH-------------HHHHHHHHHHHhcCCCCcHH
Confidence 34678889999999999999999999999999999999999988765 33999999999999999999
Q ss_pred HHHHHHHHHHhhhcchHHHHHHHHHHHHhCCCCCCCCC
Q 000686 102 AYFCACALYDLASFNREYYKVIRECNRALGIENPMEPE 139 (1351)
Q Consensus 102 a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i~~P~DP~ 139 (1351)
....|..++.+| .|++|+..+.+|+.+. |.+|.
T Consensus 95 ~~~lg~~l~~~g----~~~eAi~~~~~Al~~~-p~~~~ 127 (144)
T PRK15359 95 VYQTGVCLKMMG----EPGLAREAFQTAIKMS-YADAS 127 (144)
T ss_pred HHHHHHHHHHcC----CHHHHHHHHHHHHHhC-CCChH
Confidence 999999999999 9999999999999874 55543
No 45
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.80 E-value=0.0076 Score=71.63 Aligned_cols=99 Identities=17% Similarity=0.060 Sum_probs=87.1
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHH
Q 000686 22 GRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTII 101 (1351)
Q Consensus 22 ~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~ 101 (1351)
...|..++..|++.+|+......+...|..+.+++..|.+++.+.+- ..|+..+.+|..+.|+....
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~-------------~eAl~~~~~Al~l~P~~~~a 72 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNF-------------TEAVADANKAIELDPSLAKA 72 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-------------HHHHHHHHHHHHhCcCCHHH
Confidence 45688899999999999999999999999999999999988876432 56999999999999999999
Q ss_pred HHHHHHHHHHhhhcchHHHHHHHHHHHHhCCCCCCCC
Q 000686 102 AYFCACALYDLASFNREYYKVIRECNRALGIENPMEP 138 (1351)
Q Consensus 102 a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i~~P~DP 138 (1351)
...+|.+++.+| .|++|+.-+.+|+.+. |.+|
T Consensus 73 ~~~lg~~~~~lg----~~~eA~~~~~~al~l~-P~~~ 104 (356)
T PLN03088 73 YLRKGTACMKLE----EYQTAKAALEKGASLA-PGDS 104 (356)
T ss_pred HHHHHHHHHHhC----CHHHHHHHHHHHHHhC-CCCH
Confidence 999999999999 9999999999999763 4443
No 46
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.71 E-value=0.027 Score=56.28 Aligned_cols=102 Identities=20% Similarity=0.059 Sum_probs=89.4
Q ss_pred CCCCchHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhh
Q 000686 14 PPFDTTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASF 93 (1351)
Q Consensus 14 ~~~~~~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~ 93 (1351)
+|.....-...|...+..|++.+|+...+.++..+|..+.++...|..++.+.+- ..|+..+.+|..
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~-------------~~A~~~~~~~~~ 79 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEY-------------EEAIDAYALAAA 79 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHh
Confidence 4445566778888999999999999999999999999999999999888887543 348888999999
Q ss_pred hccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCC
Q 000686 94 LLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGI 132 (1351)
Q Consensus 94 l~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i 132 (1351)
..|.......+.|.+++.++ .|++|+..-.+++..
T Consensus 80 ~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALG----EPESALKALDLAIEI 114 (135)
T ss_pred cCCCChHHHHHHHHHHHHcC----CHHHHHHHHHHHHHh
Confidence 99999999999999999988 899999999999976
No 47
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=95.82 E-value=0.062 Score=58.86 Aligned_cols=112 Identities=17% Similarity=0.081 Sum_probs=91.8
Q ss_pred CCCCchHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhh
Q 000686 14 PPFDTTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASF 93 (1351)
Q Consensus 14 ~~~~~~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~ 93 (1351)
.|.+..+-..-+.-....|++.+|+...+....-.|..+-++...|.+++....... ...|...+.+|..
T Consensus 69 ~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~----------~~~A~~~l~~al~ 138 (198)
T PRK10370 69 NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHM----------TPQTREMIDKALA 138 (198)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCC----------cHHHHHHHHHHHH
Confidence 344555555556667788999999999999999999999999998988754443321 1348999999999
Q ss_pred hccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCCCCCCCCC
Q 000686 94 LLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGIENPMEPE 139 (1351)
Q Consensus 94 l~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i~~P~DP~ 139 (1351)
+.|+....-...|..++.+| .|++|+.-..++|....|.|+.
T Consensus 139 ~dP~~~~al~~LA~~~~~~g----~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 139 LDANEVTALMLLASDAFMQA----DYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred hCCCChhHHHHHHHHHHHcC----CHHHHHHHHHHHHhhCCCCccH
Confidence 99999999999999999999 9999999999999987775543
No 48
>PRK11189 lipoprotein NlpI; Provisional
Probab=95.25 E-value=0.09 Score=60.83 Aligned_cols=101 Identities=11% Similarity=-0.115 Sum_probs=86.5
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchH
Q 000686 21 EGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTI 100 (1351)
Q Consensus 21 e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~ 100 (1351)
-..++......|+..+|+...++.....|..+.++...|.++....+- ..|++++.+|..+.|+...
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~-------------~~A~~~~~~Al~l~P~~~~ 133 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNF-------------DAAYEAFDSVLELDPTYNY 133 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCH-------------HHHHHHHHHHHHhCCCCHH
Confidence 345566667788999999999999999999999999999888776644 3499999999999999999
Q ss_pred HHHHHHHHHHHhhhcchHHHHHHHHHHHHhCCCCCCCCC
Q 000686 101 IAYFCACALYDLASFNREYYKVIRECNRALGIENPMEPE 139 (1351)
Q Consensus 101 ~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i~~P~DP~ 139 (1351)
....++.+++.+| .|++|+.-+.+++.+ +|.||.
T Consensus 134 a~~~lg~~l~~~g----~~~eA~~~~~~al~~-~P~~~~ 167 (296)
T PRK11189 134 AYLNRGIALYYGG----RYELAQDDLLAFYQD-DPNDPY 167 (296)
T ss_pred HHHHHHHHHHHCC----CHHHHHHHHHHHHHh-CCCCHH
Confidence 8899999999888 999999999999976 577763
No 49
>PRK12370 invasion protein regulator; Provisional
Probab=95.06 E-value=0.092 Score=65.96 Aligned_cols=89 Identities=15% Similarity=0.117 Sum_probs=47.8
Q ss_pred CChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 000686 32 GDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTIIAYFCACALYD 111 (1351)
Q Consensus 32 g~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~a~f~A~lL~~ 111 (1351)
|...+|+..+++.....|+.+.+|...|.++..... . ..|+..+.+|..+.|++.....++|.+++.
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~----~---------~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 384 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE----Y---------IVGSLLFKQANLLSPISADIKYYYGWNLFM 384 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC----H---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 345556666666555566666666655555543321 1 225555555555555555555555555555
Q ss_pred hhhcchHHHHHHHHHHHHhCCCCCCCC
Q 000686 112 LASFNREYYKVIRECNRALGIENPMEP 138 (1351)
Q Consensus 112 La~~~~~Y~~av~ec~RaL~i~~P~DP 138 (1351)
+| .|++|+..+.+|+.+ +|.+|
T Consensus 385 ~G----~~~eAi~~~~~Al~l-~P~~~ 406 (553)
T PRK12370 385 AG----QLEEALQTINECLKL-DPTRA 406 (553)
T ss_pred CC----CHHHHHHHHHHHHhc-CCCCh
Confidence 55 555555555555554 34444
No 50
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=94.87 E-value=0.021 Score=40.64 Aligned_cols=24 Identities=21% Similarity=0.530 Sum_probs=20.6
Q ss_pred eecCccccccCChHHHHHhHHhhc
Q 000686 292 WECCDCSEKYGDWQSYMQHLCDFH 315 (1351)
Q Consensus 292 W~C~~Cs~kF~d~~~~~~Hl~~eH 315 (1351)
|.|+.|++.|.+..+++.|+...|
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred CCCcCCCCcCCcHHHHHHHHHhhC
Confidence 789999999999999999998776
No 51
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=94.58 E-value=0.48 Score=41.25 Aligned_cols=93 Identities=23% Similarity=0.174 Sum_probs=76.8
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHHH
Q 000686 23 RAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTIIA 102 (1351)
Q Consensus 23 ~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~a 102 (1351)
..|......|++.+|+...+.....+|..+.++...|.++.....- ..|++.+.++....|......
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~a~~~~~~~~~~~~~~~~~~ 71 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKY-------------EEALEDYEKALELDPDNAKAY 71 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhCCCcchhHH
Confidence 4566677889999999999999999999888888888888776322 348888999999999998777
Q ss_pred HHHHHHHHHhhhcchHHHHHHHHHHHHhCC
Q 000686 103 YFCACALYDLASFNREYYKVIRECNRALGI 132 (1351)
Q Consensus 103 ~f~A~lL~~La~~~~~Y~~av~ec~RaL~i 132 (1351)
.-.|..++..+ .|+++.....+++.+
T Consensus 72 ~~~~~~~~~~~----~~~~a~~~~~~~~~~ 97 (100)
T cd00189 72 YNLGLAYYKLG----KYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHHH----hHHHHHHHHHHHHcc
Confidence 77788888877 799998888888755
No 52
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=94.28 E-value=0.031 Score=40.17 Aligned_cols=23 Identities=17% Similarity=0.567 Sum_probs=21.3
Q ss_pred eecCccccccCChHHHHHhHHhhc
Q 000686 292 WECCDCSEKYGDWQSYMQHLCDFH 315 (1351)
Q Consensus 292 W~C~~Cs~kF~d~~~~~~Hl~~eH 315 (1351)
+.|+.|++.|.+...|..|+.. |
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~-H 23 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRR-H 23 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHH-H
T ss_pred CCCCCCCCccCCHHHHHHHHhH-C
Confidence 5899999999999999999976 5
No 53
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=94.27 E-value=0.17 Score=61.58 Aligned_cols=102 Identities=25% Similarity=0.214 Sum_probs=91.1
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHH
Q 000686 22 GRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTII 101 (1351)
Q Consensus 22 ~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~ 101 (1351)
=-.|+..++-|...+|++....|...+|+.+.+..+.|.|.+++-+.- .|.+.+.+|..+.|++..+
T Consensus 310 YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~-------------~A~e~~~kal~l~P~~~~l 376 (484)
T COG4783 310 YGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAK-------------EAIERLKKALALDPNSPLL 376 (484)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH-------------HHHHHHHHHHhcCCCccHH
Confidence 346888999999999999999999999999999999999999887663 3999999999999999999
Q ss_pred HHHHHHHHHHhhhcchHHHHHHHHHHHHhCCCCCCCCCcC
Q 000686 102 AYFCACALYDLASFNREYYKVIRECNRALGIENPMEPERS 141 (1351)
Q Consensus 102 a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i~~P~DP~~~ 141 (1351)
-.-+|..|+.+| .+++++++-+|++.- .|.||..-
T Consensus 377 ~~~~a~all~~g----~~~eai~~L~~~~~~-~p~dp~~w 411 (484)
T COG4783 377 QLNLAQALLKGG----KPQEAIRILNRYLFN-DPEDPNGW 411 (484)
T ss_pred HHHHHHHHHhcC----ChHHHHHHHHHHhhc-CCCCchHH
Confidence 999999999999 888999999998843 57777644
No 54
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=0.068 Score=68.06 Aligned_cols=213 Identities=11% Similarity=-0.066 Sum_probs=121.4
Q ss_pred hhHHHHHHHHHhhhhhhccccCccccccccccccCchhHHHHHHhhhhhccccccccchhhHHHhHHHHHHHhhhccccc
Q 000686 650 YQFELEFILNVLETDRAVAAFQFENTSRVHENWNQSDEYVGEKILSWTNQLGNDIWLENVRIITSIVSMKLFNLQLGEIS 729 (1351)
Q Consensus 650 ~~~~~~~i~~vl~~~~~~~~f~~~~~~~~~~~~~~~d~~v~~~i~~~~~~~~~~~~~iD~~I~~~~~~~~~l~~~L~~~s 729 (1351)
.++.-|-||+++-. |--.+...+.+..|-. ....++..+..++...-.++++--++..+.++++..+..+.+
T Consensus 27 ~k~~s~sir~~~m~------~p~~~l~~~~~Seh~~--~~~~v~t~qs~~~le~~~l~~i~~~~~~~~~~~~~g~~l~~~ 98 (806)
T KOG1887|consen 27 RKILSCSIRDWLMG------FPVKHLGQLEVSEHSL--DSRLVETPQSICFLENPELYQVLDFLKKIKCQRNDGTGLVCR 98 (806)
T ss_pred hhhccCcccchhhc------CCHHHhccceeccccc--chhhhcccchhhhhccHHHHHHHHHHHhhccccccCCccccc
Confidence 45556667777632 1111113455666655 778899999999999999999999999999999999999999
Q ss_pred cccchhhhhhhhHHHHHHHHhhhhhHHHHHhHhhhhhcc--CC-CCcccccCCCCccccc----cccccccchhhhhhcc
Q 000686 730 AYEYQLILLPMFRSLVKSRLERHIDEEAVKKLNEIQKGL--EE-PDNKGQTQGKSKNKKN----KNKNKKRKDQREAKDF 802 (1351)
Q Consensus 730 ~~Dyr~~ilp~~k~~l~~~L~~~~~~da~~k~~aa~~~~--l~-~~~~~~~~~~~~~~~~----sk~kkk~~d~r~~kd~ 802 (1351)
+-||--...|.-+ + +|+.++..++.++. +. .+...-. +|..++.. ..++|...|.+...-.
T Consensus 99 ~~~~~~~~~~~~~-k----------~d~d~~~~~~~~~~rl~~~~~~~~~~-~g~~n~~~p~~~~~~~~~~~d~iiswl~ 166 (806)
T KOG1887|consen 99 AVYSFFSRTRVKS-K----------IDFDAQFSVLLLDKRLLKSKGNRFDD-EGTINVFDPEAHYAKTKSQLDDIISWLE 166 (806)
T ss_pred cccceeeeeeccc-c----------cCCchhhhhhhhcchhhhccCccccC-CCcccccCchHhhhhhhhhcchhhhhhh
Confidence 9999877665543 3 23333333332221 11 4444444 45555544 2222233333322211
Q ss_pred ccccCCCCccCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCcchhhhhhhhH-HHH----HHHHhhhhhhhchHh
Q 000686 803 GVTRDIEQPLETGDTEQPSETGDMEQPSATRDIEQPSETGDIKQPSLPQEKAVQIVD-DMQ----QLIATENAEKKSNEK 877 (1351)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ee~~~~~~-~~~----~~~~~~~~~~~~~~~ 877 (1351)
. + +.-|+.+|.+.++.- +. .-+.++-|||-+- .+. .++.. .+-.+++
T Consensus 167 ~-~----------------v~~d~~fp~~~~~~n-------l~-~~~~~~rav~~tc~~~~t~~~~~~~~---~~~~~~~ 218 (806)
T KOG1887|consen 167 D-Y----------------VLENKIFPRPIREHN-------LD-IWMAVLRAKQFTCRTLATKYAKKILV---LKYDAAL 218 (806)
T ss_pred h-h----------------hhccccCCchhhhcc-------ch-hHHHHHHHHHHHHHHHhhHHHHHHHh---hchhhhh
Confidence 1 1 122333343333111 11 1123566666554 211 22222 3444777
Q ss_pred hhhhhhhhcccccccccccccchhhhcccccCCCccc
Q 000686 878 EKSLEETDSKGQTRGKSKNKKNKNKKRKYQGEHADFC 914 (1351)
Q Consensus 878 er~le~tl~~~~~~~~~k~k~~~~~~~~~~~~~~~~~ 914 (1351)
.+..-.+..+ +.|++||.+ .|.++|...-+|+|
T Consensus 219 ~~~~~k~~~e-d~r~~n~~~---dq~~~y~~~~~~~~ 251 (806)
T KOG1887|consen 219 TDPENKCMRE-DERRKNKPE---DQWLEYEQLLLDSC 251 (806)
T ss_pred cchhhhhcch-hhhhhcchH---HHHHHHHHhchHHH
Confidence 7777777777 777777555 78888886666655
No 55
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=93.28 E-value=0.13 Score=45.48 Aligned_cols=64 Identities=23% Similarity=0.161 Sum_probs=55.2
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCch
Q 000686 23 RAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSST 99 (1351)
Q Consensus 23 ~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl 99 (1351)
..|...++.|++.+|++..+.+...+|..+.+++..|.+++.+.+- ..|+..+.+|+.+.|++.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~-------------~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRY-------------DEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-H-------------HHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH-------------HHHHHHHHHHHHHCcCCC
Confidence 3577889999999999999999999999999999999999977644 348899999999999863
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=93.27 E-value=0.33 Score=61.06 Aligned_cols=110 Identities=12% Similarity=-0.036 Sum_probs=84.1
Q ss_pred CCCchHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhh
Q 000686 15 PFDTTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFL 94 (1351)
Q Consensus 15 ~~~~~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l 94 (1351)
|.+..+-...+.-....|++.+|+...+......|+++.+|+.-|.+++...+- ..|+..+.+|..+
T Consensus 335 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~-------------~eAi~~~~~Al~l 401 (553)
T PRK12370 335 HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQL-------------EEALQTINECLKL 401 (553)
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-------------HHHHHHHHHHHhc
Confidence 333333444455566788999999999999999999999998888887765332 4589999999999
Q ss_pred ccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCCCCCCCCCcC
Q 000686 95 LSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGIENPMEPERS 141 (1351)
Q Consensus 95 ~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i~~P~DP~~~ 141 (1351)
.|.........+..+|.++ .|++|+..+.+++....|.+|...
T Consensus 402 ~P~~~~~~~~~~~~~~~~g----~~eeA~~~~~~~l~~~~p~~~~~~ 444 (553)
T PRK12370 402 DPTRAAAGITKLWITYYHT----GIDDAIRLGDELRSQHLQDNPILL 444 (553)
T ss_pred CCCChhhHHHHHHHHHhcc----CHHHHHHHHHHHHHhccccCHHHH
Confidence 9998877666666777766 789999999998877667777643
No 57
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=93.10 E-value=0.3 Score=43.86 Aligned_cols=69 Identities=17% Similarity=0.071 Sum_probs=62.0
Q ss_pred HHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHHHHHHH
Q 000686 27 AAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTIIAYFCA 106 (1351)
Q Consensus 27 ~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~a~f~A 106 (1351)
-.++.++..+|++.+..+..-+|.++.+++..|.+++++.+-. .|+..+.++....|+........|
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~-------------~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYE-------------EALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHH-------------HHHHHHHHHHHHCCCcHHHHHHHH
Confidence 3578899999999999999999999999999999999988663 499999999999999999888877
Q ss_pred HH
Q 000686 107 CA 108 (1351)
Q Consensus 107 ~l 108 (1351)
++
T Consensus 71 ~l 72 (73)
T PF13371_consen 71 ML 72 (73)
T ss_pred hc
Confidence 64
No 58
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.07 E-value=0.48 Score=53.38 Aligned_cols=109 Identities=18% Similarity=0.145 Sum_probs=85.7
Q ss_pred CCCCCCCCCCCchHH----HHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHH
Q 000686 7 SEQPPPLPPFDTTAE----GRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIE 82 (1351)
Q Consensus 7 ~~~~~~~~~~~~~~e----~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~ 82 (1351)
+.+|+|.--++.+.+ ..-|+..++.|+.+.|.+..++..+.-|+++++|++.++++-++... +.
T Consensus 20 vt~~~~~~~~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~--~~---------- 87 (250)
T COG3063 20 VTDPAPSRQTDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGEN--DL---------- 87 (250)
T ss_pred cCCCCccccccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCh--hh----------
Confidence 345555434454433 45688999999999999999999999999999999999998776533 33
Q ss_pred HHHHHHHHHhhhccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCC
Q 000686 83 EAAMSALQASFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGI 132 (1351)
Q Consensus 83 ~al~~~~~Aa~l~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i 132 (1351)
|-+.|++|+.+.|+.-.+--=|---|...| .|+++..--.+|+.-
T Consensus 88 -A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg----~~~eA~q~F~~Al~~ 132 (250)
T COG3063 88 -ADESYRKALSLAPNNGDVLNNYGAFLCAQG----RPEEAMQQFERALAD 132 (250)
T ss_pred -HHHHHHHHHhcCCCccchhhhhhHHHHhCC----ChHHHHHHHHHHHhC
Confidence 889999999999999966555555555555 899999999999854
No 59
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=92.82 E-value=1 Score=43.18 Aligned_cols=97 Identities=18% Similarity=0.098 Sum_probs=73.6
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcc---hhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhc
Q 000686 19 TAEGRAAIAAYDEGDYVGALKCIKNSESRYRKCP---FYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLL 95 (1351)
Q Consensus 19 ~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~---~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~ 95 (1351)
......+....+.|++.+|.+..+.+...+|.++ -+++..|.++++...- ..|+..+.++..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------------~~A~~~~~~~~~~~ 69 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKY-------------ADAAKAFLAVVKKY 69 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccH-------------HHHHHHHHHHHHHC
Confidence 3445678888999999999999999999998774 4566666665554432 45899999999999
Q ss_pred cCch---HHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCC
Q 000686 96 SSST---IIAYFCACALYDLASFNREYYKVIRECNRALGI 132 (1351)
Q Consensus 96 p~sl---~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i 132 (1351)
|++. .+....|.+++.++ .|++|+.-..+++..
T Consensus 70 p~~~~~~~~~~~~~~~~~~~~----~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 70 PKSPKAPDALLKLGMSLQELG----DKEKAKATLQQVIKR 105 (119)
T ss_pred CCCCcccHHHHHHHHHHHHhC----ChHHHHHHHHHHHHH
Confidence 9963 45556667777766 788888888887765
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=92.65 E-value=0.93 Score=47.60 Aligned_cols=98 Identities=14% Similarity=0.078 Sum_probs=82.3
Q ss_pred chHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccC
Q 000686 18 TTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSS 97 (1351)
Q Consensus 18 ~~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~ 97 (1351)
.......+......|++.+|+...++....+|..+.++...|.++.... +. ..|+..+.+|..+.|+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~----~~---------~~A~~~~~~al~~~~~ 97 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLG----EL---------EKAEDSFRRALTLNPN 97 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC----CH---------HHHHHHHHHHHhhCCC
Confidence 3445566788889999999999999999999999999998888777653 22 4588999999999999
Q ss_pred chHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCC
Q 000686 98 STIIAYFCACALYDLASFNREYYKVIRECNRALGI 132 (1351)
Q Consensus 98 sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i 132 (1351)
........|..++..| .|++|..-+.+++..
T Consensus 98 ~~~~~~~~~~~~~~~g----~~~~A~~~~~~~~~~ 128 (234)
T TIGR02521 98 NGDVLNNYGTFLCQQG----KYEQAMQQFEQAIED 128 (234)
T ss_pred CHHHHHHHHHHHHHcc----cHHHHHHHHHHHHhc
Confidence 9888888888888887 899999999999864
No 61
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=92.51 E-value=0.61 Score=59.24 Aligned_cols=113 Identities=12% Similarity=0.070 Sum_probs=78.0
Q ss_pred CCCchHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHH------------HhhcCCCCCcchhhH--
Q 000686 15 PFDTTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKI------------ALQNNDHDGGTVRNY-- 80 (1351)
Q Consensus 15 ~~~~~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~------------A~~~d~~~~~~K~~~-- 80 (1351)
|.........+.-.+..|++.+|+...+......|..+.++...|.+++.. |..+++. .....+
T Consensus 362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~--~~~~~~~l 439 (615)
T TIGR00990 362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD--FIFSHIQL 439 (615)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc--CHHHHHHH
Confidence 344455566666777777777777777777777777777777777766543 2222221 111111
Q ss_pred ---------HHHHHHHHHHHhhhccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCCC
Q 000686 81 ---------IEEAAMSALQASFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGIE 133 (1351)
Q Consensus 81 ---------L~~al~~~~~Aa~l~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i~ 133 (1351)
+..|+..+.+|..++|++..+-.+++.++..+| .|++|+....+|+.+.
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g----~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQN----KFDEAIEKFDTAIELE 497 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc----CHHHHHHHHHHHHhcC
Confidence 356788888888888888888888888888877 7888888888888774
No 62
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=92.42 E-value=0.64 Score=59.09 Aligned_cols=112 Identities=13% Similarity=-0.005 Sum_probs=71.7
Q ss_pred CCCchHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHH------------HhhcCCCCCcchhhH--
Q 000686 15 PFDTTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKI------------ALQNNDHDGGTVRNY-- 80 (1351)
Q Consensus 15 ~~~~~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~------------A~~~d~~~~~~K~~~-- 80 (1351)
|.....-...+.-....|++.+|+...+......|..+.++...|.+++.+ |..+++. +...-|
T Consensus 328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~l 405 (615)
T TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE--DPDIYYHR 405 (615)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHH
Confidence 333344455666677899999999999999999999999998888887653 2222221 111111
Q ss_pred ---------HHHHHHHHHHHhhhccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCC
Q 000686 81 ---------IEEAAMSALQASFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGI 132 (1351)
Q Consensus 81 ---------L~~al~~~~~Aa~l~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i 132 (1351)
+..|+.++.+|..+.|+........|.+++.+| .|++|+....+++.+
T Consensus 406 g~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g----~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 406 AQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEG----SIASSMATFRRCKKN 462 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHh
Confidence 224556666666666666655555566666555 566666666666644
No 63
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=92.39 E-value=1 Score=51.92 Aligned_cols=97 Identities=16% Similarity=0.080 Sum_probs=71.8
Q ss_pred CchHHHHHHHHH-hhcCChHHHHHHHHHHHHhcCCcc---hhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHh
Q 000686 17 DTTAEGRAAIAA-YDEGDYVGALKCIKNSESRYRKCP---FYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQAS 92 (1351)
Q Consensus 17 ~~~~e~~~al~~-~~rg~~~~Alk~~k~la~~~~~s~---~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa 92 (1351)
+-...-..|++. +..|++.+|+...+.+...||+|+ -+|+.-|.+++....- ..|+..|.+++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~-------------~~A~~~f~~vv 207 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKK-------------DDAAYYFASVV 207 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCH-------------HHHHHHHHHHH
Confidence 345566688876 667999999999999999999984 6899888888765322 45999999999
Q ss_pred hhccCchHHHHHH---HHHHHHhhhcchHHHHHHHHHHHHh
Q 000686 93 FLLSSSTIIAYFC---ACALYDLASFNREYYKVIRECNRAL 130 (1351)
Q Consensus 93 ~l~p~sl~~a~f~---A~lL~~La~~~~~Y~~av~ec~RaL 130 (1351)
..+|++....-.+ |..++.++ .|++|.....+.+
T Consensus 208 ~~yP~s~~~~dAl~klg~~~~~~g----~~~~A~~~~~~vi 244 (263)
T PRK10803 208 KNYPKSPKAADAMFKVGVIMQDKG----DTAKAKAVYQQVI 244 (263)
T ss_pred HHCCCCcchhHHHHHHHHHHHHcC----CHHHHHHHHHHHH
Confidence 9999987555444 44444555 5666666655544
No 64
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=91.88 E-value=1.4 Score=48.40 Aligned_cols=112 Identities=23% Similarity=0.218 Sum_probs=84.7
Q ss_pred CCCCCCCCCCCchHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcc---hhhHhhHHHHHHHHhhcCCCCCcchhhHHHH
Q 000686 7 SEQPPPLPPFDTTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKCP---FYQHAKAFILYKIALQNNDHDGGTVRNYIEE 83 (1351)
Q Consensus 7 ~~~~~~~~~~~~~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~---~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~ 83 (1351)
.|+. |.+.-.+..--..+...+..|+..+|+....++...+|.++ .+++..|.++++... . ..
T Consensus 23 ~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~----~---------~~ 88 (235)
T TIGR03302 23 KEAD-PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGD----Y---------AE 88 (235)
T ss_pred cccC-CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCC----H---------HH
Confidence 3344 67777778888888899999999999999999999999876 466777877776532 2 55
Q ss_pred HHHHHHHHhhhccCchHH--H-HHHHHHHHHhhh----cchHHHHHHHHHHHHhCC
Q 000686 84 AAMSALQASFLLSSSTII--A-YFCACALYDLAS----FNREYYKVIRECNRALGI 132 (1351)
Q Consensus 84 al~~~~~Aa~l~p~sl~~--a-~f~A~lL~~La~----~~~~Y~~av~ec~RaL~i 132 (1351)
|+..+.++...+|++... + ...+..++.+.. ..+.|++|+....+++..
T Consensus 89 A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 89 AIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred HHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 999999999999998874 2 334555555411 113688899988888855
No 65
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=91.80 E-value=0.25 Score=62.53 Aligned_cols=103 Identities=14% Similarity=0.090 Sum_probs=56.9
Q ss_pred cccCCCChHHHHHHHHhhCcHHHHHHHhcCCCccccC---------CCCc--hHHHHHHHHHHHhc-C---CCCcC--hH
Q 000686 1009 LGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKH---------DGNP--CIVCAFFDICAAKN-R---GEAVD--PT 1071 (1351)
Q Consensus 1009 L~Nl~GTCYLNSILQ~L~hip~FRe~LLs~~~~~h~~---------~~~p--cV~caL~~LF~s~~-~---~~~vs--P~ 1071 (1351)
|.|.||+||.|++||||..+|.|+-.+....-..+.. .... |-.+.+...-..+. . .+.+. -+
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 113 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKNSSSNESFNLSVT 113 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhccCCccccccchHH
Confidence 9999779999999999999999999776643211111 0111 11121111111111 1 11111 22
Q ss_pred HHHHHHHhhccCCccccccccccHHHHHHHHHHHHHHHhc
Q 000686 1072 ELRIALSTYYCNQNNFQEGQVNDAYLFLLVIFKVLHVAFY 1111 (1351)
Q Consensus 1072 ~Lr~aL~k~~p~~~~F~~g~QqDA~EFL~~LLd~LH~~l~ 1111 (1351)
.+-..+.+.......|....|.||++++..++-.+...+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~~ 153 (587)
T KOG1864|consen 114 QLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVMG 153 (587)
T ss_pred HHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhcc
Confidence 3333332222122345567899999999988877765443
No 66
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=91.45 E-value=1.6 Score=58.79 Aligned_cols=121 Identities=11% Similarity=0.012 Sum_probs=79.2
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHHHH
Q 000686 24 AAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTIIAY 103 (1351)
Q Consensus 24 ~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~a~ 103 (1351)
.+....+.|++.+|+..........|+.+.+|..-|.++....+ ...|++.+.+|..+.|++..+-.
T Consensus 615 LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~-------------~eeAi~~l~~AL~l~P~~~~a~~ 681 (987)
T PRK09782 615 RATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGD-------------IAQSREMLERAHKGLPDDPALIR 681 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHHhCCCCHHHHH
Confidence 33444455555555555555555555555555555555444322 24588899999999999999999
Q ss_pred HHHHHHHHhhhcchHHHHHHHHHHHHhCCCCCCCCCcCccccCCCCchhhHHHHHHHHHHHHHHHH
Q 000686 104 FCACALYDLASFNREYYKVIRECNRALGIENPMEPERSSFVFKDPSQEWGIEKTKQELRELMKKSE 169 (1351)
Q Consensus 104 f~A~lL~~La~~~~~Y~~av~ec~RaL~i~~P~DP~~~~l~~~~~~~~~ri~~~k~eL~~Li~ka~ 169 (1351)
..|.+++.+| .|++|+..+++|+.+. |..-.+. ..-+.+...+..+++..+...
T Consensus 682 nLA~al~~lG----d~~eA~~~l~~Al~l~----P~~a~i~----~~~g~~~~~~~~~~~a~~~~~ 735 (987)
T PRK09782 682 QLAYVNQRLD----DMAATQHYARLVIDDI----DNQALIT----PLTPEQNQQRFNFRRLHEEVG 735 (987)
T ss_pred HHHHHHHHCC----CHHHHHHHHHHHHhcC----CCCchhh----hhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999 8999999999999663 4433322 233445555555666665554
No 67
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=91.24 E-value=0.95 Score=58.34 Aligned_cols=100 Identities=18% Similarity=0.106 Sum_probs=78.9
Q ss_pred HHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHHHHH
Q 000686 25 AIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTIIAYF 104 (1351)
Q Consensus 25 al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~a~f 104 (1351)
+....+.|++.+|+....+....+|..+.+++.-|.+++...+--+ . + ..|+..+.+|..+.|++...-..
T Consensus 219 ~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~e-A----~----~~A~~~~~~Al~l~P~~~~a~~~ 289 (656)
T PRK15174 219 VDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSRE-A----K----LQAAEHWRHALQFNSDNVRIVTL 289 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchh-h----H----HHHHHHHHHHHhhCCCCHHHHHH
Confidence 4455677888888888888888888888888888877776543211 1 0 34899999999999999999999
Q ss_pred HHHHHHHhhhcchHHHHHHHHHHHHhCCCCCCCC
Q 000686 105 CACALYDLASFNREYYKVIRECNRALGIENPMEP 138 (1351)
Q Consensus 105 ~A~lL~~La~~~~~Y~~av~ec~RaL~i~~P~DP 138 (1351)
+|.+++..| .|++|+...++++.+ .|.+|
T Consensus 290 lg~~l~~~g----~~~eA~~~l~~al~l-~P~~~ 318 (656)
T PRK15174 290 YADALIRTG----QNEKAIPLLQQSLAT-HPDLP 318 (656)
T ss_pred HHHHHHHCC----CHHHHHHHHHHHHHh-CCCCH
Confidence 999999988 899999999999976 34444
No 68
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=90.88 E-value=2 Score=47.13 Aligned_cols=115 Identities=17% Similarity=0.090 Sum_probs=77.7
Q ss_pred CCCCchHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcch---hhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHH
Q 000686 14 PPFDTTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPF---YQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQ 90 (1351)
Q Consensus 14 ~~~~~~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~---~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~ 90 (1351)
++.--.+.-.-|-..++.|++..|+...+.++..||.++. +++..|..++++....-.. .-.....+.|+..+..
T Consensus 38 s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~--~~D~~~~~~A~~~~~~ 115 (203)
T PF13525_consen 38 SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRS--DRDQTSTRKAIEEFEE 115 (203)
T ss_dssp STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-T--T---HHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhc--ccChHHHHHHHHHHHH
Confidence 4444456667788889999999999999999999998765 7889999999998775222 3446788999999999
Q ss_pred HhhhccCchHHHHHHH----------HHHHHhhhc---chHHHHHHHHHHHHh
Q 000686 91 ASFLLSSSTIIAYFCA----------CALYDLASF---NREYYKVIRECNRAL 130 (1351)
Q Consensus 91 Aa~l~p~sl~~a~f~A----------~lL~~La~~---~~~Y~~av~ec~RaL 130 (1351)
-+..+|+|.-..--.. .--+..|+. .+.|..|+.-+...+
T Consensus 116 li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~ 168 (203)
T PF13525_consen 116 LIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVI 168 (203)
T ss_dssp HHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHH
T ss_pred HHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 9999999985432211 111222221 225888888887766
No 69
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=89.87 E-value=2.6 Score=50.00 Aligned_cols=68 Identities=18% Similarity=0.179 Sum_probs=34.5
Q ss_pred CChHHHHHHHHhhCcHH-HHHHHhcCCCccccCCCCchHHHHHHHHHHHhcCCCCcChHHHHHHHHhhccCCcccccccc
Q 000686 1014 ANNFLYMIIQSLWNLRE-FQEECKKKLDEVQKHDGNPCIVCAFFDICAAKNRGEAVDPTELRIALSTYYCNQNNFQEGQV 1092 (1351)
Q Consensus 1014 GTCYLNSILQ~L~hip~-FRe~LLs~~~~~h~~~~~pcV~caL~~LF~s~~~~~~vsP~~Lr~aL~k~~p~~~~F~~g~Q 1092 (1351)
||||+||++=.|=++.. |+ . -++++++..|..+. |..|-..+-.. ..+..|+.
T Consensus 110 NNCwVna~~~~LQ~~~~~f~---------------~----~~l~~aw~~f~~G~---~~~fVa~~Ya~----~~~~~G~~ 163 (320)
T PF08715_consen 110 NNCWVNAACLQLQALKIKFK---------------S----PGLDEAWNEFKAGD---PAPFVAWCYAS----TNAKKGDP 163 (320)
T ss_dssp TTHHHHHHHHHHTTST--BS---------------S----HHHHHHHHHHHTT-----HHHHHHHHHH----TT--TTS-
T ss_pred CCcHHHHHHHHHHhcCCccC---------------C----HHHHHHHHHHhCCC---hHHHHHHHHHH----cCCCCCCC
Confidence 59999999865543321 11 1 14555555554332 33333222221 22345899
Q ss_pred ccHHHHHHHHHHHHH
Q 000686 1093 NDAYLFLLVIFKVLH 1107 (1351)
Q Consensus 1093 qDA~EFL~~LLd~LH 1107 (1351)
.||+++|..||+-++
T Consensus 164 gDa~~~L~~ll~~~~ 178 (320)
T PF08715_consen 164 GDAEYVLSKLLKDAD 178 (320)
T ss_dssp --HHHHHHHHHTTB-
T ss_pred cCHHHHHHHHHHhcc
Confidence 999999999998776
No 70
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=89.32 E-value=4.1 Score=44.76 Aligned_cols=110 Identities=16% Similarity=0.079 Sum_probs=79.4
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcch---hhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 000686 20 AEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPF---YQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLS 96 (1351)
Q Consensus 20 ~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~---~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p 96 (1351)
+-...+......|+..+|+...+++...+|+++. +++..|.++++.. ... .........|+..+.+++...|
T Consensus 72 a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~---~~~--~~~~~~~~~A~~~~~~~~~~~p 146 (235)
T TIGR03302 72 AQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQI---DRV--DRDQTAAREAFEAFQELIRRYP 146 (235)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhc---ccc--cCCHHHHHHHHHHHHHHHHHCC
Confidence 3355667788899999999999999999998876 6888888887762 222 3334456779999999999999
Q ss_pred CchHHHHH-----------------HHHHHHHhhhcchHHHHHHHHHHHHhCCCCCCCCC
Q 000686 97 SSTIIAYF-----------------CACALYDLASFNREYYKVIRECNRALGIENPMEPE 139 (1351)
Q Consensus 97 ~sl~~a~f-----------------~A~lL~~La~~~~~Y~~av~ec~RaL~i~~P~DP~ 139 (1351)
++...... .|..++..| .|.+|+.-..+++.. .|.+|.
T Consensus 147 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g----~~~~A~~~~~~al~~-~p~~~~ 201 (235)
T TIGR03302 147 NSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRG----AYVAAINRFETVVEN-YPDTPA 201 (235)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----ChHHHHHHHHHHHHH-CCCCcc
Confidence 98643211 233334444 799999999998865 344443
No 71
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=89.21 E-value=4.2 Score=46.24 Aligned_cols=76 Identities=20% Similarity=0.189 Sum_probs=60.7
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhh---HhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccC
Q 000686 21 EGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQ---HAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSS 97 (1351)
Q Consensus 21 e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h---~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~ 97 (1351)
.=..|...++.|++.+|...-+++...||+++.+. +--|+++++... ...|+..+.+++.+.|+
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~-------------y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD-------------LPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC-------------HHHHHHHHHHHHHhCcC
Confidence 34789999999999999999999999999998877 444566655432 25699999999999999
Q ss_pred chHHHHHHHHHHHHhh
Q 000686 98 STIIAYFCACALYDLA 113 (1351)
Q Consensus 98 sl~~a~f~A~lL~~La 113 (1351)
+... +-++|.+|
T Consensus 102 ~~~~----~~a~Y~~g 113 (243)
T PRK10866 102 HPNI----DYVLYMRG 113 (243)
T ss_pred CCch----HHHHHHHH
Confidence 9866 44555555
No 72
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=89.08 E-value=2.8 Score=54.12 Aligned_cols=99 Identities=14% Similarity=0.013 Sum_probs=69.0
Q ss_pred CchHHHHHHHHHhhcCChHH----HHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHh
Q 000686 17 DTTAEGRAAIAAYDEGDYVG----ALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQAS 92 (1351)
Q Consensus 17 ~~~~e~~~al~~~~rg~~~~----Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa 92 (1351)
+...-..-+....+.|+..+ |+...+......|..+.++...|.++.+..+- ..|+..+.+|.
T Consensus 245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~-------------~eA~~~l~~al 311 (656)
T PRK15174 245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQN-------------EKAIPLLQQSL 311 (656)
T ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH-------------HHHHHHHHHHH
Confidence 34444445566677787764 78888888888888888888888887765432 23667777777
Q ss_pred hhccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCC
Q 000686 93 FLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGI 132 (1351)
Q Consensus 93 ~l~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i 132 (1351)
.+.|+...+...+|..+..+| .|++|+....+++..
T Consensus 312 ~l~P~~~~a~~~La~~l~~~G----~~~eA~~~l~~al~~ 347 (656)
T PRK15174 312 ATHPDLPYVRAMYARALRQVG----QYTAASDEFVQLARE 347 (656)
T ss_pred HhCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHh
Confidence 777777777667777777666 677777777776654
No 73
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=88.06 E-value=2.3 Score=55.29 Aligned_cols=100 Identities=16% Similarity=-0.027 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcC-----------CCCC----------cchhhHHHHHHHHHHHHh
Q 000686 34 YVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNN-----------DHDG----------GTVRNYIEEAAMSALQAS 92 (1351)
Q Consensus 34 ~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d-----------~~~~----------~~K~~~L~~al~~~~~Aa 92 (1351)
.+.||..+.+++.+||..+-+|++-|.|...+.+--+ .|+. =.+..++..|+..+.++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l 147 (694)
T PRK15179 68 PAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF 147 (694)
T ss_pred hHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 4455555556666666556666555555444332111 0100 012234455777777777
Q ss_pred hhccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCCCCCCCC
Q 000686 93 FLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGIENPMEP 138 (1351)
Q Consensus 93 ~l~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i~~P~DP 138 (1351)
...|++...-+-.|++|-.+| .|++|..--.|++. ..|.+|
T Consensus 148 ~~~p~~~~~~~~~a~~l~~~g----~~~~A~~~y~~~~~-~~p~~~ 188 (694)
T PRK15179 148 SGGSSSAREILLEAKSWDEIG----QSEQADACFERLSR-QHPEFE 188 (694)
T ss_pred hcCCCCHHHHHHHHHHHHHhc----chHHHHHHHHHHHh-cCCCcH
Confidence 777777777777777777777 77777777777776 444433
No 74
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.76 E-value=0.8 Score=53.26 Aligned_cols=68 Identities=21% Similarity=0.162 Sum_probs=55.6
Q ss_pred HHHHHHhhcCCC-CCcchhhHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCC
Q 000686 61 ILYKIALQNNDH-DGGTVRNYIEEAAMSALQASFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGI 132 (1351)
Q Consensus 61 i~~~~A~~~d~~-~~~~K~~~L~~al~~~~~Aa~l~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i 132 (1351)
....+|..+.+- ..-+|-.=...||+.|.+|..|.|++.++..=+|-++..|| +|+.||+-|+.||.|
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg----~~~~AVkDce~Al~i 144 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLG----EYEDAVKDCESALSI 144 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhc----chHHHHHHHHHHHhc
Confidence 455566666543 00334444577999999999999999999999999999999 999999999999988
No 75
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=86.73 E-value=3 Score=53.21 Aligned_cols=93 Identities=17% Similarity=0.059 Sum_probs=57.2
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHHH
Q 000686 23 RAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTIIA 102 (1351)
Q Consensus 23 ~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~a 102 (1351)
..|......|++.+|++.++......|..+.++...|.++.... + ...|+..+.+|..+.|++....
T Consensus 164 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~---------~~~A~~~~~~a~~~~p~~~~~~ 230 (899)
T TIGR02917 164 GLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLG----N---------IELALAAYRKAIALRPNNPAVL 230 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC----C---------HHHHHHHHHHHHhhCCCCHHHH
Confidence 33344444455555555555554445544444444444433321 1 1347778888888888888888
Q ss_pred HHHHHHHHHhhhcchHHHHHHHHHHHHhCC
Q 000686 103 YFCACALYDLASFNREYYKVIRECNRALGI 132 (1351)
Q Consensus 103 ~f~A~lL~~La~~~~~Y~~av~ec~RaL~i 132 (1351)
...|..++..| .|++|.....+++..
T Consensus 231 ~~~~~~~~~~g----~~~~A~~~~~~~~~~ 256 (899)
T TIGR02917 231 LALATILIEAG----EFEEAEKHADALLKK 256 (899)
T ss_pred HHHHHHHHHcC----CHHHHHHHHHHHHHh
Confidence 88888887777 788888887777754
No 76
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=86.60 E-value=4.8 Score=42.24 Aligned_cols=112 Identities=11% Similarity=-0.079 Sum_probs=77.7
Q ss_pred CchHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHH------------hhcCCCCCcchh------
Q 000686 17 DTTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIA------------LQNNDHDGGTVR------ 78 (1351)
Q Consensus 17 ~~~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A------------~~~d~~~~~~K~------ 78 (1351)
........+......|+..+|++..+.....+|..+.++...|.+++... ....+.+.....
T Consensus 64 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 143 (234)
T TIGR02521 64 DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGL 143 (234)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 34555667778888999999999999999888887777766666554332 111110001111
Q ss_pred -----hHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCC
Q 000686 79 -----NYIEEAAMSALQASFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGI 132 (1351)
Q Consensus 79 -----~~L~~al~~~~~Aa~l~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i 132 (1351)
.-+..|...+.+|....|+........|.+++..+ .|++|+.-..+++.+
T Consensus 144 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~----~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 144 CALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRG----QYKDARAYLERYQQT 198 (234)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcC----CHHHHHHHHHHHHHh
Confidence 11345788888888889988887777888888777 788888888888876
No 77
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=85.94 E-value=3.3 Score=38.55 Aligned_cols=81 Identities=23% Similarity=0.213 Sum_probs=60.4
Q ss_pred cCChHHHHHHHHHHHHhcCCc--chhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 000686 31 EGDYVGALKCIKNSESRYRKC--PFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTIIAYFCACA 108 (1351)
Q Consensus 31 rg~~~~Alk~~k~la~~~~~s--~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~a~f~A~l 108 (1351)
.|++.+|+...+++.+..|.. +.+.+.-|.++++...- ..|+..+.+ ....|..+......|+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y-------------~~A~~~~~~-~~~~~~~~~~~~l~a~~ 67 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKY-------------EEAIELLQK-LKLDPSNPDIHYLLARC 67 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHH-------------HHHHHHHHC-HTHHHCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCH-------------HHHHHHHHH-hCCCCCCHHHHHHHHHH
Confidence 578999999999999999953 22333346666655432 457888887 78888889999999999
Q ss_pred HHHhhhcchHHHHHHHHHHHH
Q 000686 109 LYDLASFNREYYKVIRECNRA 129 (1351)
Q Consensus 109 L~~La~~~~~Y~~av~ec~Ra 129 (1351)
++.|+ .|++|+.-=.+|
T Consensus 68 ~~~l~----~y~eAi~~l~~~ 84 (84)
T PF12895_consen 68 LLKLG----KYEEAIKALEKA 84 (84)
T ss_dssp HHHTT-----HHHHHHHHHHH
T ss_pred HHHhC----CHHHHHHHHhcC
Confidence 99999 899998765543
No 78
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=85.85 E-value=1.7 Score=38.97 Aligned_cols=53 Identities=26% Similarity=0.320 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhhhccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCCCCCCCCC
Q 000686 82 EEAAMSALQASFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGIENPMEPE 139 (1351)
Q Consensus 82 ~~al~~~~~Aa~l~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i~~P~DP~ 139 (1351)
..|+.++.+++.+.|++...-..+|..++.+| .|.+|+....++|.+. |.+|.
T Consensus 12 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g----~~~~A~~~l~~~l~~~-p~~~~ 64 (73)
T PF13371_consen 12 EEALEVLERALELDPDDPELWLQRARCLFQLG----RYEEALEDLERALELS-PDDPD 64 (73)
T ss_pred HHHHHHHHHHHHhCcccchhhHHHHHHHHHhc----cHHHHHHHHHHHHHHC-CCcHH
Confidence 56999999999999999999999999999999 9999999999999663 44443
No 79
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=85.63 E-value=2.1 Score=52.08 Aligned_cols=82 Identities=16% Similarity=0.005 Sum_probs=69.1
Q ss_pred HhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHHHHHHHH
Q 000686 28 AYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTIIAYFCAC 107 (1351)
Q Consensus 28 ~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~a~f~A~ 107 (1351)
.+.-++..+|++++++.....|.++.+..+|+..++...+- .-|+..+.+|+.+.|++.+.=...|.
T Consensus 210 ~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~-------------~lAL~iAk~av~lsP~~f~~W~~La~ 276 (395)
T PF09295_consen 210 YLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY-------------ELALEIAKKAVELSPSEFETWYQLAE 276 (395)
T ss_pred HHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH-------------HHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 33456788999999999999999988888888877765533 34999999999999999999999999
Q ss_pred HHHHhhhcchHHHHHHHHH
Q 000686 108 ALYDLASFNREYYKVIREC 126 (1351)
Q Consensus 108 lL~~La~~~~~Y~~av~ec 126 (1351)
.+..++ .|+.|+.-.
T Consensus 277 ~Yi~~~----d~e~ALlaL 291 (395)
T PF09295_consen 277 CYIQLG----DFENALLAL 291 (395)
T ss_pred HHHhcC----CHHHHHHHH
Confidence 999999 999998554
No 80
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=85.39 E-value=1.7 Score=38.53 Aligned_cols=66 Identities=20% Similarity=0.094 Sum_probs=53.8
Q ss_pred cchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHh
Q 000686 51 CPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRAL 130 (1351)
Q Consensus 51 s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL 130 (1351)
.|.+++..|.+++..-.- ..|+..+.+|+.+.|++..+-.-+|.+++.+++ .|++|+..+.+||
T Consensus 2 ~a~~~~~~g~~~~~~~~~-------------~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~---~~~~A~~~~~~al 65 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDY-------------EEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGK---DYEEAIEDFEKAL 65 (69)
T ss_dssp SHHHHHHHHHHHHHTTHH-------------HHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTT---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCH-------------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCc---cHHHHHHHHHHHH
Confidence 355677777777764432 459999999999999999999999999998872 5999999999998
Q ss_pred CC
Q 000686 131 GI 132 (1351)
Q Consensus 131 ~i 132 (1351)
.+
T Consensus 66 ~l 67 (69)
T PF13414_consen 66 KL 67 (69)
T ss_dssp HH
T ss_pred Hc
Confidence 65
No 81
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=84.64 E-value=4.4 Score=42.14 Aligned_cols=88 Identities=11% Similarity=-0.097 Sum_probs=76.0
Q ss_pred CCCCCchHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHh
Q 000686 13 LPPFDTTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQAS 92 (1351)
Q Consensus 13 ~~~~~~~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa 92 (1351)
+.|.+...-...+......|++.+|+..........|..+.+|+-.|.++..+.+- ..|+.++.+|.
T Consensus 53 ~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~-------------~eAi~~~~~Al 119 (144)
T PRK15359 53 AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEP-------------GLAREAFQTAI 119 (144)
T ss_pred cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH-------------HHHHHHHHHHH
Confidence 34566777788888899999999999999999999999999999999999887654 34999999999
Q ss_pred hhccCchHHHHHHHHHHHHhh
Q 000686 93 FLLSSSTIIAYFCACALYDLA 113 (1351)
Q Consensus 93 ~l~p~sl~~a~f~A~lL~~La 113 (1351)
.+.|+......-++.++..|.
T Consensus 120 ~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 120 KMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred HhCCCChHHHHHHHHHHHHHH
Confidence 999999998888888777654
No 82
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=84.53 E-value=4.3 Score=53.37 Aligned_cols=100 Identities=16% Similarity=0.070 Sum_probs=57.8
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHH
Q 000686 22 GRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTII 101 (1351)
Q Consensus 22 ~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~ 101 (1351)
...|......|+..+|+...+.+.+..|.++-++...|.++.+..+- ..|+..+.+++.+.|++..
T Consensus 53 ~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~-------------~eA~~~l~~~l~~~P~~~~- 118 (765)
T PRK10049 53 AAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQY-------------DEALVKAKQLVSGAPDKAN- 118 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-------------HHHHHHHHHHHHhCCCCHH-
Confidence 44444566667777777777777777777666666555544332211 2356666666666666666
Q ss_pred HHHHHHHHHHhhhcchHHHHHHHHHHHHhCCCCCCCCCc
Q 000686 102 AYFCACALYDLASFNREYYKVIRECNRALGIENPMEPER 140 (1351)
Q Consensus 102 a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i~~P~DP~~ 140 (1351)
....|.++..++ .+++|+....+++.+ .|.+|..
T Consensus 119 ~~~la~~l~~~g----~~~~Al~~l~~al~~-~P~~~~~ 152 (765)
T PRK10049 119 LLALAYVYKRAG----RHWDELRAMTQALPR-APQTQQY 152 (765)
T ss_pred HHHHHHHHHHCC----CHHHHHHHHHHHHHh-CCCCHHH
Confidence 555555555554 566666666666655 3555443
No 83
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=84.50 E-value=4.6 Score=51.63 Aligned_cols=105 Identities=15% Similarity=0.021 Sum_probs=70.1
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHH------------HhhcCCCCCcchhhHH--------
Q 000686 22 GRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKI------------ALQNNDHDGGTVRNYI-------- 81 (1351)
Q Consensus 22 ~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~------------A~~~d~~~~~~K~~~L-------- 81 (1351)
..-+....+.|+..+|++.+......+|..+.+++..|.++... +....+. +....+-
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD--NAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhc
Confidence 33455566777788888888888888888777777777766632 1111111 1110000
Q ss_pred --HHHHHHHHHHhhhccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCC
Q 000686 82 --EEAAMSALQASFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGI 132 (1351)
Q Consensus 82 --~~al~~~~~Aa~l~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i 132 (1351)
..|+..+.+|..+.|++..+...+|.+++.+| .|++|+...++++.+
T Consensus 818 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 818 KDPRALEYAEKALKLAPNIPAILDTLGWLLVEKG----EADRALPLLRKAVNI 866 (899)
T ss_pred CcHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC----CHHHHHHHHHHHHhh
Confidence 23677788888888888888888888888777 788888888888865
No 84
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=84.37 E-value=2 Score=38.18 Aligned_cols=64 Identities=17% Similarity=0.047 Sum_probs=55.6
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 000686 21 EGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLS 96 (1351)
Q Consensus 21 e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p 96 (1351)
....+...++.|++.+|+...+..+...|+.+.++.-.|.++.++.. +. ..|+..+.+|..+.|
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~---~~---------~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGK---DY---------EEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTT---HH---------HHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCc---cH---------HHHHHHHHHHHHcCc
Confidence 34677888999999999999999999999999999999999988862 12 458999999999988
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=84.31 E-value=6.8 Score=45.61 Aligned_cols=107 Identities=13% Similarity=-0.009 Sum_probs=67.6
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcC--------------CCCCcchhh-------
Q 000686 21 EGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNN--------------DHDGGTVRN------- 79 (1351)
Q Consensus 21 e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d--------------~~~~~~K~~------- 79 (1351)
...+++..+.+|+..+|++..+.+...+|..+.++.+ |..++.+..... +.+...-..
T Consensus 46 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ 124 (355)
T cd05804 46 AHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGL 124 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHH
Confidence 4556888899999999999999999999998876654 433333221111 000000000
Q ss_pred ----HHHHHHHHHHHHhhhccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCC
Q 000686 80 ----YIEEAAMSALQASFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGI 132 (1351)
Q Consensus 80 ----~L~~al~~~~~Aa~l~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i 132 (1351)
.+..|+..+.+|..+.|++....+..|..+++.| .|++++.-+.+++..
T Consensus 125 ~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g----~~~eA~~~l~~~l~~ 177 (355)
T cd05804 125 EEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQG----RFKEGIAFMESWRDT 177 (355)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC----CHHHHHHHHHhhhhc
Confidence 1344666666666677776666666666666666 666666666666654
No 86
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=84.16 E-value=4.7 Score=52.55 Aligned_cols=104 Identities=12% Similarity=-0.182 Sum_probs=88.6
Q ss_pred CCCCCchHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHh
Q 000686 13 LPPFDTTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQAS 92 (1351)
Q Consensus 13 ~~~~~~~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa 92 (1351)
+-|-.+.+-...|....+++...+|+..+..+...-|.++.+|+..|..+.++.+- ..|.++|++|.
T Consensus 115 ~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~-------------~~A~~~y~~~~ 181 (694)
T PRK15179 115 RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQS-------------EQADACFERLS 181 (694)
T ss_pred hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcch-------------HHHHHHHHHHH
Confidence 34555666677788888888899999999999888899999999888888877654 34899999999
Q ss_pred hhccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCCC
Q 000686 93 FLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGIE 133 (1351)
Q Consensus 93 ~l~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i~ 133 (1351)
...|+....-.-+|++|-++| .+++|+.-+++|+...
T Consensus 182 ~~~p~~~~~~~~~a~~l~~~G----~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 182 RQHPEFENGYVGWAQSLTRRG----ALWRARDVLQAGLDAI 218 (694)
T ss_pred hcCCCcHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhh
Confidence 999999999999999999999 8999999999999664
No 87
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=83.86 E-value=2 Score=37.85 Aligned_cols=53 Identities=25% Similarity=0.277 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhhhccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCCCCCCCC
Q 000686 81 IEEAAMSALQASFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGIENPMEP 138 (1351)
Q Consensus 81 L~~al~~~~~Aa~l~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i~~P~DP 138 (1351)
...|+..+.+++...|++...-...|.+++..| .|++|+.-..+++.+ +|.+|
T Consensus 13 ~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g----~~~~A~~~~~~a~~~-~P~~p 65 (65)
T PF13432_consen 13 YDEAIAAFEQALKQDPDNPEAWYLLGRILYQQG----RYDEALAYYERALEL-DPDNP 65 (65)
T ss_dssp HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHH-STT-H
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHH-CcCCC
Confidence 456999999999999999999999999999999 899999888888865 35554
No 88
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=83.80 E-value=5.1 Score=42.51 Aligned_cols=88 Identities=14% Similarity=0.015 Sum_probs=67.5
Q ss_pred CCCCchHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCc---chhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHH
Q 000686 14 PPFDTTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKC---PFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQ 90 (1351)
Q Consensus 14 ~~~~~~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s---~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~ 90 (1351)
.+......-..+......|++.+|+...++.+...|.. +.+++.-|.++..+..- ..|+..+.+
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~-------------~~A~~~~~~ 97 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEH-------------DKALEYYHQ 97 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCH-------------HHHHHHHHH
Confidence 44455556677778888999999999999999877654 35666666666554321 458889999
Q ss_pred HhhhccCchHHHHHHHHHHHHhhh
Q 000686 91 ASFLLSSSTIIAYFCACALYDLAS 114 (1351)
Q Consensus 91 Aa~l~p~sl~~a~f~A~lL~~La~ 114 (1351)
|....|+........+.+++.+|.
T Consensus 98 al~~~p~~~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 98 ALELNPKQPSALNNIAVIYHKRGE 121 (172)
T ss_pred HHHhCcccHHHHHHHHHHHHHcCC
Confidence 999999998888888999988875
No 89
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=83.76 E-value=4.6 Score=54.63 Aligned_cols=53 Identities=19% Similarity=0.065 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhhccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCCCCCCCCC
Q 000686 82 EEAAMSALQASFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGIENPMEPE 139 (1351)
Q Consensus 82 ~~al~~~~~Aa~l~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i~~P~DP~ 139 (1351)
..|+..+.+|..+.|++.....-.|.+|..+| .|++|+.-..+|+.+ .|.+|.
T Consensus 626 deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G----~~eeAi~~l~~AL~l-~P~~~~ 678 (987)
T PRK09782 626 PAAVSDLRAALELEPNNSNYQAALGYALWDSG----DIAQSREMLERAHKG-LPDDPA 678 (987)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHh-CCCCHH
Confidence 34788888888899998888888888888877 788888888888876 355553
No 90
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=83.00 E-value=1.9 Score=49.02 Aligned_cols=100 Identities=22% Similarity=0.124 Sum_probs=52.0
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHH
Q 000686 22 GRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTII 101 (1351)
Q Consensus 22 ~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~ 101 (1351)
...|.-..+.|+..+|++..+......|+++.+...-|.+.. +.. +..=++.++..+.++. |.+..+
T Consensus 150 ~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li------~~~----~~~~~~~~l~~~~~~~---~~~~~~ 216 (280)
T PF13429_consen 150 LALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLI------DMG----DYDEAREALKRLLKAA---PDDPDL 216 (280)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHC------TTC----HHHHHHHHHHHHHHH----HTSCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH------HCC----ChHHHHHHHHHHHHHC---cCHHHH
Confidence 444455556666677777777777777766665554444332 111 1111344444444444 555555
Q ss_pred HHHHHHHHHHhhhcchHHHHHHHHHHHHhCCCCCCCCC
Q 000686 102 AYFCACALYDLASFNREYYKVIRECNRALGIENPMEPE 139 (1351)
Q Consensus 102 a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i~~P~DP~ 139 (1351)
-..+|.+++.|| .|++|+.-..+++. .+|.||.
T Consensus 217 ~~~la~~~~~lg----~~~~Al~~~~~~~~-~~p~d~~ 249 (280)
T PF13429_consen 217 WDALAAAYLQLG----RYEEALEYLEKALK-LNPDDPL 249 (280)
T ss_dssp CHHHHHHHHHHT-----HHHHHHHHHHHHH-HSTT-HH
T ss_pred HHHHHHHhcccc----cccccccccccccc-ccccccc
Confidence 556666677666 66677666666664 3455554
No 91
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=82.80 E-value=5.2 Score=47.91 Aligned_cols=86 Identities=12% Similarity=0.000 Sum_probs=71.8
Q ss_pred CCCchHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhh
Q 000686 15 PFDTTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFL 94 (1351)
Q Consensus 15 ~~~~~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l 94 (1351)
|-+...-..+|...+..|++.+|+..+..++.-.|..+.+|+..|.+++.+..- ..|+..+.+|..+
T Consensus 33 P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~-------------~eA~~~~~~al~l 99 (356)
T PLN03088 33 PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY-------------QTAKAALEKGASL 99 (356)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH-------------HHHHHHHHHHHHh
Confidence 344566778889999999999999999999999999999999999999876433 3489999999999
Q ss_pred ccCchHHHHHHHHHHHHhh
Q 000686 95 LSSSTIIAYFCACALYDLA 113 (1351)
Q Consensus 95 ~p~sl~~a~f~A~lL~~La 113 (1351)
.|+...+....++....|.
T Consensus 100 ~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 100 APGDSRFTKLIKECDEKIA 118 (356)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999987777666655554
No 92
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=82.15 E-value=2.5 Score=37.36 Aligned_cols=67 Identities=16% Similarity=0.043 Sum_probs=56.2
Q ss_pred hhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 000686 29 YDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTIIAYFCACA 108 (1351)
Q Consensus 29 ~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~a~f~A~l 108 (1351)
++.|++.+|+...+.+...+|+.+-+.+.-|.++++...- ..|...+.++....|+...+....|++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~-------------~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQY-------------DEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-H-------------HHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH-------------HHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 5789999999999999999999999999888887776544 348899999999999988877777753
No 93
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=82.11 E-value=0.99 Score=33.03 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.5
Q ss_pred eecCccccccCChHHHHHhHHh
Q 000686 292 WECCDCSEKYGDWQSYMQHLCD 313 (1351)
Q Consensus 292 W~C~~Cs~kF~d~~~~~~Hl~~ 313 (1351)
|.|..|...|.+...+..|+..
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s 22 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRS 22 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTT
T ss_pred CCCCCCCCCcCCHHHHHHHHCc
Confidence 7899999999999999999965
No 94
>PLN02789 farnesyltranstransferase
Probab=82.11 E-value=11 Score=44.71 Aligned_cols=114 Identities=17% Similarity=0.057 Sum_probs=90.6
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHhh-----cCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhh
Q 000686 5 GQSEQPPPLPPFDTTAEGRAAIAAYD-----EGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRN 79 (1351)
Q Consensus 5 ~~~~~~~~~~~~~~~~e~~~al~~~~-----rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~ 79 (1351)
-|...|+|+.....+.+=..|.+.++ .+...+||.+..+++.-.|...-+.+.+|.++.++. .
T Consensus 19 ~~~~~~~~~~~i~y~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~------------~ 86 (320)
T PLN02789 19 PQDDGPNPVVPIAYTPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALD------------A 86 (320)
T ss_pred CCCCCCCcccceeeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcc------------h
Confidence 35666788888888877666665443 456889999999999999999999999999988762 2
Q ss_pred HHHHHHHHHHHHhhhccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCC
Q 000686 80 YIEEAAMSALQASFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGI 132 (1351)
Q Consensus 80 ~L~~al~~~~~Aa~l~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i 132 (1351)
.+..+++.+.+++...|++..+=+.++-++..++. ..|++++.-|.++|.+
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~--~~~~~el~~~~kal~~ 137 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP--DAANKELEFTRKILSL 137 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc--hhhHHHHHHHHHHHHh
Confidence 35779999999999999999998888888877772 1256777778888865
No 95
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=82.10 E-value=5.4 Score=52.42 Aligned_cols=114 Identities=10% Similarity=-0.059 Sum_probs=89.1
Q ss_pred CCCCCCCCCCchHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHH
Q 000686 8 EQPPPLPPFDTTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMS 87 (1351)
Q Consensus 8 ~~~~~~~~~~~~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~ 87 (1351)
...-|+.+..|+.-... +...|+..+|++....+....|..+.+|...|.++..+.. . ..|+..
T Consensus 8 ~~~~~~~~~~~~d~~~i---a~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~----~---------~~A~~~ 71 (765)
T PRK10049 8 ALKSALSNNQIADWLQI---ALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQ----W---------QNSLTL 71 (765)
T ss_pred hhccCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----H---------HHHHHH
Confidence 33456666666655443 3467889999999988888778888888877766655543 2 359999
Q ss_pred HHHHhhhccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCCCCCCCCCcCcc
Q 000686 88 ALQASFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGIENPMEPERSSF 143 (1351)
Q Consensus 88 ~~~Aa~l~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i~~P~DP~~~~l 143 (1351)
+.+|..+.|++.......|.++...+ .|.+|+..+.+++.. .|.++. ...
T Consensus 72 ~~~al~~~P~~~~a~~~la~~l~~~g----~~~eA~~~l~~~l~~-~P~~~~-~~~ 121 (765)
T PRK10049 72 WQKALSLEPQNDDYQRGLILTLADAG----QYDEALVKAKQLVSG-APDKAN-LLA 121 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHh-CCCCHH-HHH
Confidence 99999999999998888888888887 899999999999987 788887 433
No 96
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=81.35 E-value=8.4 Score=44.32 Aligned_cols=100 Identities=13% Similarity=-0.039 Sum_probs=84.8
Q ss_pred CCCCchHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhh
Q 000686 14 PPFDTTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASF 93 (1351)
Q Consensus 14 ~~~~~~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~ 93 (1351)
++.|+.-...-....++.||...|+..+.+.+.--|..|.++-.-|.++.++.+.-. |--.|.+|.+
T Consensus 96 ~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~-------------Ar~ay~qAl~ 162 (257)
T COG5010 96 YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDE-------------ARRAYRQALE 162 (257)
T ss_pred CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhH-------------HHHHHHHHHH
Confidence 344443333467788999999999999999999999999999999999988876622 6778999999
Q ss_pred hccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHh
Q 000686 94 LLSSSTIIAYFCACALYDLASFNREYYKVIRECNRAL 130 (1351)
Q Consensus 94 l~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL 130 (1351)
|+|+...+.-=.|.+++.=| .++.|+..-.+|-
T Consensus 163 L~~~~p~~~nNlgms~~L~g----d~~~A~~lll~a~ 195 (257)
T COG5010 163 LAPNEPSIANNLGMSLLLRG----DLEDAETLLLPAY 195 (257)
T ss_pred hccCCchhhhhHHHHHHHcC----CHHHHHHHHHHHH
Confidence 99999999999999999877 8999999888776
No 97
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=80.86 E-value=11 Score=51.81 Aligned_cols=116 Identities=16% Similarity=-0.016 Sum_probs=77.0
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHH----H----hhcCCC----CC------------
Q 000686 19 TAEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKI----A----LQNNDH----DG------------ 74 (1351)
Q Consensus 19 ~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~----A----~~~d~~----~~------------ 74 (1351)
.+-..-+......|+..+|++..++.....|..+.+++--|.++... | ..+... ..
T Consensus 386 ~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~ 465 (1157)
T PRK11447 386 YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLA 465 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHH
Confidence 34444555666777788888888877777777766665555544210 0 000000 00
Q ss_pred -----cchhhHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCCCCCCCCC
Q 000686 75 -----GTVRNYIEEAAMSALQASFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGIENPMEPE 139 (1351)
Q Consensus 75 -----~~K~~~L~~al~~~~~Aa~l~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i~~P~DP~ 139 (1351)
-...--...|+..+.+|..+.|++..+....|.+++.+| .|++|+...++++.. .|.+|.
T Consensus 466 ~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G----~~~~A~~~l~~al~~-~P~~~~ 530 (1157)
T PRK11447 466 QQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAG----QRSQADALMRRLAQQ-KPNDPE 530 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHc-CCCCHH
Confidence 000112356889999999999999999999999999998 899999999999864 355543
No 98
>PRK11906 transcriptional regulator; Provisional
Probab=80.14 E-value=18 Score=44.80 Aligned_cols=144 Identities=8% Similarity=-0.162 Sum_probs=100.2
Q ss_pred hHHHHHHHHHhhcCC---hHHHHHHHHHHH---HhcCCcchhhHhhHHHHHHHHh-hcCCCCCcchhhHHHHHHHHHHHH
Q 000686 19 TAEGRAAIAAYDEGD---YVGALKCIKNSE---SRYRKCPFYQHAKAFILYKIAL-QNNDHDGGTVRNYIEEAAMSALQA 91 (1351)
Q Consensus 19 ~~e~~~al~~~~rg~---~~~Alk~~k~la---~~~~~s~~~h~~qg~i~~~~A~-~~d~~~~~~K~~~L~~al~~~~~A 91 (1351)
.....+++.-+.+++ ...|+.+..+.. .--|..+.+|..-+..++..+- +.. + ...-...|+..+.+|
T Consensus 256 ~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~----~-~~~~~~~a~~~A~rA 330 (458)
T PRK11906 256 SDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKS----E-LELAAQKALELLDYV 330 (458)
T ss_pred hHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCC----C-chHHHHHHHHHHHHH
Confidence 355788888888887 556888888888 5557789999988888877643 211 2 456678899999999
Q ss_pred hhhccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCCCCCCCCCcCccccCCCCchhhHHHHHHHHHHHHHHHHHH
Q 000686 92 SFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGIENPMEPERSSFVFKDPSQEWGIEKTKQELRELMKKSERK 171 (1351)
Q Consensus 92 a~l~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i~~P~DP~~~~l~~~~~~~~~ri~~~k~eL~~Li~ka~~k 171 (1351)
+++.|++..--...|.++...+ .|+.+...-+||+.+ +|..+...-. -+.+.....+...=++.++.-
T Consensus 331 veld~~Da~a~~~~g~~~~~~~----~~~~a~~~f~rA~~L-~Pn~A~~~~~-------~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 331 SDITTVDGKILAIMGLITGLSG----QAKVSHILFEQAKIH-STDIASLYYY-------RALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HhcCCCCHHHHHHHHHHHHhhc----chhhHHHHHHHHhhc-CCccHHHHHH-------HHHHHHHcCCHHHHHHHHHHH
Confidence 9999999988888888888888 799999999999966 4555443311 111111222222223333344
Q ss_pred hhhhhhhh
Q 000686 172 KRWAAISS 179 (1351)
Q Consensus 172 i~~~~~r~ 179 (1351)
+|+-|.|+
T Consensus 399 lrLsP~~~ 406 (458)
T PRK11906 399 LQLEPRRR 406 (458)
T ss_pred hccCchhh
Confidence 77888877
No 99
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=79.95 E-value=6.9 Score=38.98 Aligned_cols=82 Identities=18% Similarity=0.049 Sum_probs=65.8
Q ss_pred HHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHhhhcchHH
Q 000686 40 CIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTIIAYFCACALYDLASFNREY 119 (1351)
Q Consensus 40 ~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~a~f~A~lL~~La~~~~~Y 119 (1351)
..+...+..|..+.+++..|..+++...- ..|...+.+++.+.|.....-...|.+++.++ .|
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~-------------~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~----~~ 67 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRY-------------DEALKLFQLLAAYDPYNSRYWLGLAACCQMLK----EY 67 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccH-------------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH----HH
Confidence 34566777888888888888887765422 45889999999999999999999999999998 89
Q ss_pred HHHHHHHHHHhCCCCCCCCC
Q 000686 120 YKVIRECNRALGIENPMEPE 139 (1351)
Q Consensus 120 ~~av~ec~RaL~i~~P~DP~ 139 (1351)
.+|+.-+.+++.+. |.+|.
T Consensus 68 ~~A~~~~~~~~~~~-p~~~~ 86 (135)
T TIGR02552 68 EEAIDAYALAAALD-PDDPR 86 (135)
T ss_pred HHHHHHHHHHHhcC-CCChH
Confidence 99999999999873 44443
No 100
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=79.20 E-value=6.6 Score=43.20 Aligned_cols=91 Identities=12% Similarity=-0.017 Sum_probs=69.5
Q ss_pred CChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHHHHHHHHHHH-
Q 000686 32 GDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTIIAYFCACALY- 110 (1351)
Q Consensus 32 g~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~a~f~A~lL~- 110 (1351)
+...+++...+......|..+-++..-|.++....+- ..|+.++.+|..+.|+...+...+|.+|+
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~-------------~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~ 119 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDY-------------DNALLAYRQALQLRGENAELYAALATVLYY 119 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH-------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3456777777777888888888888888777654433 45999999999999999999999999875
Q ss_pred HhhhcchHHHHHHHHHHHHhCCCCCCCC
Q 000686 111 DLASFNREYYKVIRECNRALGIENPMEP 138 (1351)
Q Consensus 111 ~La~~~~~Y~~av~ec~RaL~i~~P~DP 138 (1351)
..|+ ..|+++..-..+||... |.+|
T Consensus 120 ~~g~--~~~~~A~~~l~~al~~d-P~~~ 144 (198)
T PRK10370 120 QAGQ--HMTPQTREMIDKALALD-ANEV 144 (198)
T ss_pred hcCC--CCcHHHHHHHHHHHHhC-CCCh
Confidence 4441 12789999999999773 4444
No 101
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=78.59 E-value=11 Score=39.80 Aligned_cols=81 Identities=15% Similarity=0.016 Sum_probs=54.9
Q ss_pred chHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCc---chhhHhhHHHHHHHHhh----cCCCCCcchhhHHHHHHHHHHH
Q 000686 18 TTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKC---PFYQHAKAFILYKIALQ----NNDHDGGTVRNYIEEAAMSALQ 90 (1351)
Q Consensus 18 ~~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s---~~~h~~qg~i~~~~A~~----~d~~~~~~K~~~L~~al~~~~~ 90 (1351)
-.++..-+-..++.|+..+|+..+++++.-||.+ +-|.+..|-+.+++... +-.. +--.++.+.|+..+.+
T Consensus 47 ~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~--drD~~~~~~A~~~f~~ 124 (142)
T PF13512_consen 47 EQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRS--DRDPTPARQAFRDFEQ 124 (142)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhccc--ccCcHHHHHHHHHHHH
Confidence 3455555666677777777777777777777654 44556677777776540 0022 4445678889999999
Q ss_pred HhhhccCchH
Q 000686 91 ASFLLSSSTI 100 (1351)
Q Consensus 91 Aa~l~p~sl~ 100 (1351)
-+..+|+|.-
T Consensus 125 lv~~yP~S~y 134 (142)
T PF13512_consen 125 LVRRYPNSEY 134 (142)
T ss_pred HHHHCcCChh
Confidence 9999999863
No 102
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=78.45 E-value=13 Score=43.26 Aligned_cols=104 Identities=14% Similarity=0.071 Sum_probs=79.7
Q ss_pred CCCCCCchHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHH
Q 000686 12 PLPPFDTTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQA 91 (1351)
Q Consensus 12 ~~~~~~~~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~A 91 (1351)
|..|......+..++.....|.+.+|+...+......|..+.+++.-|+++++..+- ..|+..+.++
T Consensus 108 ~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~-------------~eA~~~l~~~ 174 (355)
T cd05804 108 PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRF-------------KEGIAFMESW 174 (355)
T ss_pred cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH-------------HHHHHHHHhh
Confidence 445555666677788889999999999999999999999999999999999886544 3377778888
Q ss_pred hhhccCchHH-H---HHHHHHHHHhhhcchHHHHHHHHHHHHhCC
Q 000686 92 SFLLSSSTII-A---YFCACALYDLASFNREYYKVIRECNRALGI 132 (1351)
Q Consensus 92 a~l~p~sl~~-a---~f~A~lL~~La~~~~~Y~~av~ec~RaL~i 132 (1351)
..+.|.+... . ...|..++..| .|++|...-.+++..
T Consensus 175 l~~~~~~~~~~~~~~~~la~~~~~~G----~~~~A~~~~~~~~~~ 215 (355)
T cd05804 175 RDTWDCSSMLRGHNWWHLALFYLERG----DYEAALAIYDTHIAP 215 (355)
T ss_pred hhccCCCcchhHHHHHHHHHHHHHCC----CHHHHHHHHHHHhcc
Confidence 8887754322 1 23566777777 899998888887644
No 103
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=78.40 E-value=15 Score=44.58 Aligned_cols=102 Identities=20% Similarity=0.167 Sum_probs=75.7
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCch
Q 000686 20 AEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSST 99 (1351)
Q Consensus 20 ~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl 99 (1351)
....+++-.+..|+...|.+.+.+....-|...+...+.|.+ |....+. ..|..-+.+|+..+|++-
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~a----a~~~g~~---------~~A~~~l~~a~~~~p~~~ 152 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEA----AQQRGDE---------ARANQHLEEAAELAGNDN 152 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH----HHHCCCH---------HHHHHHHHHHHHhCCcCc
Confidence 345678888999999999999998877777776666655544 3344454 346666666777888884
Q ss_pred -HHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCCCCCCCCC
Q 000686 100 -IIAYFCACALYDLASFNREYYKVIRECNRALGIENPMEPE 139 (1351)
Q Consensus 100 -~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i~~P~DP~ 139 (1351)
.+-..+|++++..+ .|++|.....+.+.. .|.+|.
T Consensus 153 l~~~~~~a~l~l~~~----~~~~Al~~l~~l~~~-~P~~~~ 188 (409)
T TIGR00540 153 ILVEIARTRILLAQN----ELHAARHGVDKLLEM-APRHKE 188 (409)
T ss_pred hHHHHHHHHHHHHCC----CHHHHHHHHHHHHHh-CCCCHH
Confidence 46666799988887 899999999888877 377774
No 104
>PRK11906 transcriptional regulator; Provisional
Probab=78.27 E-value=12 Score=46.48 Aligned_cols=103 Identities=10% Similarity=-0.054 Sum_probs=81.5
Q ss_pred CCCCCchHHHHHHHHHhhc---------CChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHH
Q 000686 13 LPPFDTTAEGRAAIAAYDE---------GDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEE 83 (1351)
Q Consensus 13 ~~~~~~~~e~~~al~~~~r---------g~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~ 83 (1351)
+.|-...+.|-.|.--+.+ .+.++|+.+|....+--|..|.+|..-|++..-.+.- ..
T Consensus 290 ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~-------------~~ 356 (458)
T PRK11906 290 IQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQA-------------KV 356 (458)
T ss_pred CCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcch-------------hh
Confidence 4444445555444433332 3477888888888888899999999999987766652 33
Q ss_pred HHHHHHHHhhhccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCC
Q 000686 84 AAMSALQASFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGI 132 (1351)
Q Consensus 84 al~~~~~Aa~l~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i 132 (1351)
|...+.+|..|.|++.-...++|-+++..| ..++++....|||..
T Consensus 357 a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G----~~~~a~~~i~~alrL 401 (458)
T PRK11906 357 SHILFEQAKIHSTDIASLYYYRALVHFHNE----KIEEARICIDKSLQL 401 (458)
T ss_pred HHHHHHHHhhcCCccHHHHHHHHHHHHHcC----CHHHHHHHHHHHhcc
Confidence 788999999999999999999999999999 899999999999966
No 105
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=76.27 E-value=2 Score=37.65 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=22.7
Q ss_pred ecCccccccCChHHHHHhHHhhcccc
Q 000686 293 ECCDCSEKYGDWQSYMQHLCDFHDLR 318 (1351)
Q Consensus 293 ~C~~Cs~kF~d~~~~~~Hl~~eH~~~ 318 (1351)
.||+|++ -.|..+|..|+..+|...
T Consensus 4 ~CP~C~~-~~~~~~L~~H~~~~H~~~ 28 (54)
T PF05605_consen 4 TCPYCGK-GFSESSLVEHCEDEHRSE 28 (54)
T ss_pred CCCCCCC-ccCHHHHHHHHHhHCcCC
Confidence 5999999 678899999999999975
No 106
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=76.17 E-value=11 Score=45.62 Aligned_cols=102 Identities=13% Similarity=-0.020 Sum_probs=50.0
Q ss_pred CchHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 000686 17 DTTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLS 96 (1351)
Q Consensus 17 ~~~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p 96 (1351)
+......-|......|++.+|.+.+++.....|+ +.+-.+.|++ . .+++ ..++..+.+.....|
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~-~~l~~l~~~l----~--~~~~---------~~al~~~e~~lk~~P 325 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKRQYD-ERLVLLIPRL----K--TNNP---------EQLEKVLRQQIKQHG 325 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHhhc----c--CCCh---------HHHHHHHHHHHhhCC
Confidence 3444445555555556666666666555553332 2222222222 1 1232 234555555555566
Q ss_pred CchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCCCCCCCCC
Q 000686 97 SSTIIAYFCACALYDLASFNREYYKVIRECNRALGIENPMEPE 139 (1351)
Q Consensus 97 ~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i~~P~DP~ 139 (1351)
++..+...+|++++..+ .|.+|...-++++.+. |.++.
T Consensus 326 ~~~~l~l~lgrl~~~~~----~~~~A~~~le~al~~~-P~~~~ 363 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHG----EWQEASLAFRAALKQR-PDAYD 363 (398)
T ss_pred CCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHhcC-CCHHH
Confidence 66665555666555555 5555555555555542 44443
No 107
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=76.13 E-value=1.4 Score=39.28 Aligned_cols=30 Identities=20% Similarity=0.541 Sum_probs=26.9
Q ss_pred eEeecCccccccCChHHHHHhHHhhccccC
Q 000686 290 KFWECCDCSEKYGDWQSYMQHLCDFHDLRI 319 (1351)
Q Consensus 290 ~FW~C~~Cs~kF~d~~~~~~Hl~~eH~~~l 319 (1351)
.|..||+|++.|-+.+++..|+-.-|.-.+
T Consensus 16 ~~lrCPRC~~~FR~~K~Y~RHVNKaH~~~~ 45 (65)
T COG4049 16 EFLRCPRCGMVFRRRKDYIRHVNKAHGWLF 45 (65)
T ss_pred eeeeCCchhHHHHHhHHHHHHhhHHhhhhh
Confidence 689999999999999999999988887544
No 108
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=75.48 E-value=39 Score=34.69 Aligned_cols=93 Identities=19% Similarity=0.084 Sum_probs=65.7
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhh-cCCCCCcchhhHHHHHHHHHHHHhhhccC---ch
Q 000686 24 AAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQ-NNDHDGGTVRNYIEEAAMSALQASFLLSS---ST 99 (1351)
Q Consensus 24 ~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~-~d~~~~~~K~~~L~~al~~~~~Aa~l~p~---sl 99 (1351)
.|-..-..|...+|+..-....+.=.. -.+..++.|-+.-+.. +-.+ ..|+..++++...+|+ +.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~--~~~~~~a~i~lastlr~LG~~---------deA~~~L~~~~~~~p~~~~~~ 75 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLS--GADRRRALIQLASTLRNLGRY---------DEALALLEEALEEFPDDELNA 75 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC--chHHHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHCCCccccH
Confidence 444455567788999888887664322 2233344443332222 1122 4588899999999999 88
Q ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHHHhC
Q 000686 100 IIAYFCACALYDLASFNREYYKVIRECNRALG 131 (1351)
Q Consensus 100 ~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~ 131 (1351)
.+..|+|..|+.+| .|++++...-++|.
T Consensus 76 ~l~~f~Al~L~~~g----r~~eAl~~~l~~la 103 (120)
T PF12688_consen 76 ALRVFLALALYNLG----RPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHHHCC----CHHHHHHHHHHHHH
Confidence 99999999999999 89999999988873
No 109
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=75.29 E-value=23 Score=40.29 Aligned_cols=84 Identities=10% Similarity=-0.035 Sum_probs=63.0
Q ss_pred CCCCchHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCc---chhhHhhHHHHHHHHhh-------cCCCCCcchhhHHHH
Q 000686 14 PPFDTTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKC---PFYQHAKAFILYKIALQ-------NNDHDGGTVRNYIEE 83 (1351)
Q Consensus 14 ~~~~~~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s---~~~h~~qg~i~~~~A~~-------~d~~~~~~K~~~L~~ 83 (1351)
++.-..+.-.-|...++.|+..+|+...++++..||.+ +-+++..|...+.+... ++.+ ...+...+.
T Consensus 65 s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~--~rD~~~~~~ 142 (243)
T PRK10866 65 GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRS--DRDPQHARA 142 (243)
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCcc--ccCHHHHHH
Confidence 34444444556677799999999999999999999866 55566677665555422 2333 555778899
Q ss_pred HHHHHHHHhhhccCch
Q 000686 84 AAMSALQASFLLSSST 99 (1351)
Q Consensus 84 al~~~~~Aa~l~p~sl 99 (1351)
|+..+.+-+..+|+|-
T Consensus 143 A~~~~~~li~~yP~S~ 158 (243)
T PRK10866 143 AFRDFSKLVRGYPNSQ 158 (243)
T ss_pred HHHHHHHHHHHCcCCh
Confidence 9999999999999996
No 110
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=75.04 E-value=18 Score=39.06 Aligned_cols=94 Identities=13% Similarity=-0.007 Sum_probs=72.5
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCch
Q 000686 20 AEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSST 99 (1351)
Q Consensus 20 ~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl 99 (1351)
.-=.-|-...+.|+..+|.++-+-++.--|..+..++--|-++-.+.. +..|+++|.+|..|.|++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~-------------~~~AI~aY~~A~~L~~ddp 103 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKH-------------WGEAIYAYGRAAQIKIDAP 103 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh-------------HHHHHHHHHHHHhcCCCCc
Confidence 333455667788888888888888888888887777766665544432 3559999999999999999
Q ss_pred HHHHHHHHHHHHhhhcch---HHHHHHHHH
Q 000686 100 IIAYFCACALYDLASFNR---EYYKVIREC 126 (1351)
Q Consensus 100 ~~a~f~A~lL~~La~~~~---~Y~~av~ec 126 (1351)
+.....|..++.+|+-.. .++.|+..|
T Consensus 104 ~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 104 QAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 988888888888886643 478888888
No 111
>PHA00616 hypothetical protein
Probab=74.86 E-value=1.5 Score=37.53 Aligned_cols=25 Identities=20% Similarity=0.538 Sum_probs=22.5
Q ss_pred ecCccccccCChHHHHHhHHhhccc
Q 000686 293 ECCDCSEKYGDWQSYMQHLCDFHDL 317 (1351)
Q Consensus 293 ~C~~Cs~kF~d~~~~~~Hl~~eH~~ 317 (1351)
.|+.||+.|....++..|+..-|-.
T Consensus 3 qC~~CG~~F~~~s~l~~H~r~~hg~ 27 (44)
T PHA00616 3 QCLRCGGIFRKKKEVIEHLLSVHKQ 27 (44)
T ss_pred ccchhhHHHhhHHHHHHHHHHhcCC
Confidence 6999999999999999999777755
No 112
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=74.71 E-value=12 Score=44.07 Aligned_cols=94 Identities=13% Similarity=-0.094 Sum_probs=59.9
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHH
Q 000686 22 GRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTII 101 (1351)
Q Consensus 22 ~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~ 101 (1351)
...+....+.|+..+|++..++.....|..+.++..-|.++.+... . ..|+..+.++....|.....
T Consensus 184 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----~---------~~A~~~~~~~~~~~p~~~~~ 250 (389)
T PRK11788 184 CELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGD----Y---------AAAIEALERVEEQDPEYLSE 250 (389)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCC----H---------HHHHHHHHHHHHHChhhHHH
Confidence 4556667888999999999999999899888888887777766432 2 23555555555555554321
Q ss_pred -HHHHHHHHHHhhhcchHHHHHHHHHHHHhCC
Q 000686 102 -AYFCACALYDLASFNREYYKVIRECNRALGI 132 (1351)
Q Consensus 102 -a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i 132 (1351)
....|.+++.+| .+++|+....+++.+
T Consensus 251 ~~~~l~~~~~~~g----~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 251 VLPKLMECYQALG----DEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHHHHcC----CHHHHHHHHHHHHHh
Confidence 223344444444 566666666555554
No 113
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=74.57 E-value=6.7 Score=34.57 Aligned_cols=48 Identities=15% Similarity=-0.011 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhhhccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCC
Q 000686 81 IEEAAMSALQASFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGI 132 (1351)
Q Consensus 81 L~~al~~~~~Aa~l~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i 132 (1351)
...|+..+.+|....|++..+-..+|..++.+| .|++|...+.+++..
T Consensus 7 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g----~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 7 YDEAIELLEKALQRNPDNPEARLLLAQCYLKQG----QYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-----HHHHHHHHHCCHGG
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999 999999999888854
No 114
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=74.39 E-value=68 Score=35.26 Aligned_cols=70 Identities=24% Similarity=0.262 Sum_probs=48.1
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHH
Q 000686 22 GRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTII 101 (1351)
Q Consensus 22 ~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~ 101 (1351)
=..|...++.|++.+|.+..+++..+||+|+.+-..+ +.+|.. --+..-...|+..+.+-..++|++..+
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~----l~la~a------~y~~~~y~~A~~~~~~fi~~yP~~~~~ 78 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQ----LMLAYA------YYKQGDYEEAIAAYERFIKLYPNSPKA 78 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHH----HHHHHH------HHHTT-HHHHHHHHHHHHHH-TT-TTH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHH----HHHHHH------HHHcCCHHHHHHHHHHHHHHCCCCcch
Confidence 3578899999999999999999999999987766532 222221 111122466899999999999998853
No 115
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=73.95 E-value=31 Score=36.64 Aligned_cols=79 Identities=25% Similarity=0.235 Sum_probs=58.0
Q ss_pred CCCCCCCCCCchHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcc---hhhHhhHHHHHHHHhhcCCCCCcchhhHHHHH
Q 000686 8 EQPPPLPPFDTTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKCP---FYQHAKAFILYKIALQNNDHDGGTVRNYIEEA 84 (1351)
Q Consensus 8 ~~~~~~~~~~~~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~---~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~a 84 (1351)
+-.|-.|+.++-.+ |...++.||+.+|.+..++|-.|||.++ .++.--|+.+++...- ..|
T Consensus 3 ~~~~~~~~~~ly~~---a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y-------------~~A 66 (142)
T PF13512_consen 3 EVVPDKSPQELYQE---AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDY-------------EEA 66 (142)
T ss_pred CCCCCCCHHHHHHH---HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCH-------------HHH
Confidence 34556666655554 5566789999999999999999998655 4555555555554322 348
Q ss_pred HHHHHHHhhhccCchHHH
Q 000686 85 AMSALQASFLLSSSTIIA 102 (1351)
Q Consensus 85 l~~~~~Aa~l~p~sl~~a 102 (1351)
+..+.+-+.|.|++..+.
T Consensus 67 ~a~~~rFirLhP~hp~vd 84 (142)
T PF13512_consen 67 IAAYDRFIRLHPTHPNVD 84 (142)
T ss_pred HHHHHHHHHhCCCCCCcc
Confidence 999999999999998643
No 116
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=73.81 E-value=6.1 Score=44.93 Aligned_cols=89 Identities=24% Similarity=0.088 Sum_probs=60.0
Q ss_pred HHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHHHHH
Q 000686 25 AIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTIIAYF 104 (1351)
Q Consensus 25 al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~a~f 104 (1351)
+.-.+..|+..+|....+.+....|.++.++..-|.+++.+.+- ..|+..+.++....|+++.+-..
T Consensus 187 ~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~-------------~~Al~~~~~~~~~~p~d~~~~~~ 253 (280)
T PF13429_consen 187 AWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRY-------------EEALEYLEKALKLNPDDPLWLLA 253 (280)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-H-------------HHHHHHHHHHHHHSTT-HHHHHH
T ss_pred HHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccc-------------ccccccccccccccccccccccc
Confidence 33456778889888888888888888888888888888887644 45999999999999999999999
Q ss_pred HHHHHHHhhhcchHHHHHHHHHHHHh
Q 000686 105 CACALYDLASFNREYYKVIRECNRAL 130 (1351)
Q Consensus 105 ~A~lL~~La~~~~~Y~~av~ec~RaL 130 (1351)
+|-+|..+| .+++|..--.+++
T Consensus 254 ~a~~l~~~g----~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 254 YADALEQAG----RKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHT--------------------
T ss_pred ccccccccc----ccccccccccccc
Confidence 999999999 6666666555554
No 117
>PRK11189 lipoprotein NlpI; Provisional
Probab=73.69 E-value=21 Score=41.53 Aligned_cols=100 Identities=13% Similarity=-0.025 Sum_probs=75.6
Q ss_pred CCCchHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhh
Q 000686 15 PFDTTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFL 94 (1351)
Q Consensus 15 ~~~~~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l 94 (1351)
|.+.......+......|++.+|+........-.|+.+.++...|.+++...+- ..|+..+.+|..+
T Consensus 95 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~-------------~eA~~~~~~al~~ 161 (296)
T PRK11189 95 PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRY-------------ELAQDDLLAFYQD 161 (296)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-------------HHHHHHHHHHHHh
Confidence 344556677788889999999999999999999999999999999999875433 4499999999999
Q ss_pred ccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCC
Q 000686 95 LSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGI 132 (1351)
Q Consensus 95 ~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i 132 (1351)
.|++... +. +..++...+.+++|.....+++..
T Consensus 162 ~P~~~~~----~~-~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 162 DPNDPYR----AL-WLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred CCCCHHH----HH-HHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999732 11 112222233688888888777633
No 118
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=73.07 E-value=16 Score=50.54 Aligned_cols=123 Identities=7% Similarity=-0.141 Sum_probs=74.2
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHHH
Q 000686 23 RAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTIIA 102 (1351)
Q Consensus 23 ~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~a 102 (1351)
..|-.....|+..+|+.+.+ .+|.++.++...|.++.+... . ..|++.+.+|..+.|+....-
T Consensus 578 ~~a~~l~~~G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~----~---------~~A~~~y~~al~~~P~~~~a~ 640 (1157)
T PRK11447 578 ETANRLRDSGKEAEAEALLR----QQPPSTRIDLTLADWAQQRGD----Y---------AAARAAYQRVLTREPGNADAR 640 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCC----H---------HHHHHHHHHHHHhCCCCHHHH
Confidence 34445567777888877655 678888777777776654432 2 447777777777777777776
Q ss_pred HHHHHHHHHhhhcchHHHHHHHHHHHHhCCCCCCCCCcCccccCCCCchhhHHHHHHHHHHHHHH
Q 000686 103 YFCACALYDLASFNREYYKVIRECNRALGIENPMEPERSSFVFKDPSQEWGIEKTKQELRELMKK 167 (1351)
Q Consensus 103 ~f~A~lL~~La~~~~~Y~~av~ec~RaL~i~~P~DP~~~~l~~~~~~~~~ri~~~k~eL~~Li~k 167 (1351)
.-.|.+++.++ .|++|+....+++.. .|.+|......-.......+.....+.++.++..
T Consensus 641 ~~la~~~~~~g----~~~eA~~~l~~ll~~-~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 641 LGLIEVDIAQG----DLAAARAQLAKLPAT-ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHCC----CHHHHHHHHHHHhcc-CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 66777777666 677777777766654 4555543321100001123344455555555554
No 119
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=72.98 E-value=2.7 Score=39.94 Aligned_cols=25 Identities=16% Similarity=0.491 Sum_probs=21.9
Q ss_pred EeecCccccccCChHHHHHhHHhhc
Q 000686 291 FWECCDCSEKYGDWQSYMQHLCDFH 315 (1351)
Q Consensus 291 FW~C~~Cs~kF~d~~~~~~Hl~~eH 315 (1351)
-|.|..|++.|.+...+..||...|
T Consensus 50 ~~~C~~C~~~f~s~~~l~~Hm~~~~ 74 (100)
T PF12756_consen 50 SFRCPYCNKTFRSREALQEHMRSKH 74 (100)
T ss_dssp SEEBSSSS-EESSHHHHHHHHHHTT
T ss_pred CCCCCccCCCCcCHHHHHHHHcCcc
Confidence 5899999999999999999998764
No 120
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=72.62 E-value=26 Score=41.21 Aligned_cols=100 Identities=21% Similarity=0.094 Sum_probs=77.0
Q ss_pred HhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHHHHHHHH
Q 000686 28 AYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTIIAYFCAC 107 (1351)
Q Consensus 28 ~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~a~f~A~ 107 (1351)
....|+...|+..-.....--|..+-+...-|.+++..|.+.+++ .+-..+.+|..+.|..+.--.++|.
T Consensus 166 ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta----------~a~~ll~~al~~D~~~iral~lLA~ 235 (287)
T COG4235 166 YMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTA----------KARALLRQALALDPANIRALSLLAF 235 (287)
T ss_pred HHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccH----------HHHHHHHHHHhcCCccHHHHHHHHH
Confidence 445556666655555544455788888888888888888777665 3667788888999999999999999
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhCCCCCCCCCcC
Q 000686 108 ALYDLASFNREYYKVIRECNRALGIENPMEPERS 141 (1351)
Q Consensus 108 lL~~La~~~~~Y~~av~ec~RaL~i~~P~DP~~~ 141 (1351)
..|+-| .|++|+.-=..=|+...|.||...
T Consensus 236 ~afe~g----~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 236 AAFEQG----DYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHHHcc----cHHHHHHHHHHHHhcCCCCCchHH
Confidence 999888 899998877777788888888855
No 121
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=72.56 E-value=2 Score=48.23 Aligned_cols=33 Identities=18% Similarity=0.407 Sum_probs=25.9
Q ss_pred cCceeEeecCccccccCChHHHHHhHHhhccccC
Q 000686 286 HRSWKFWECCDCSEKYGDWQSYMQHLCDFHDLRI 319 (1351)
Q Consensus 286 n~sW~FW~C~~Cs~kF~d~~~~~~Hl~~eH~~~l 319 (1351)
...|+ |.|+.|+|+|.-.+=-+.|+..+|...+
T Consensus 73 ~~~~K-~~C~lc~KlFkg~eFV~KHI~nKH~e~v 105 (214)
T PF04959_consen 73 EDEDK-WRCPLCGKLFKGPEFVRKHIFNKHPEKV 105 (214)
T ss_dssp SSSEE-EEE-SSS-EESSHHHHHHHHHHH-HHHH
T ss_pred HcCCE-ECCCCCCcccCChHHHHHHHhhcCHHHH
Confidence 46676 8999999999999999999999998554
No 122
>smart00355 ZnF_C2H2 zinc finger.
Probab=72.05 E-value=3 Score=29.61 Aligned_cols=23 Identities=17% Similarity=0.528 Sum_probs=20.7
Q ss_pred ecCccccccCChHHHHHhHHhhcc
Q 000686 293 ECCDCSEKYGDWQSYMQHLCDFHD 316 (1351)
Q Consensus 293 ~C~~Cs~kF~d~~~~~~Hl~~eH~ 316 (1351)
.|..|++.|.+...+..|+. .|.
T Consensus 2 ~C~~C~~~f~~~~~l~~H~~-~H~ 24 (26)
T smart00355 2 RCPECGKVFKSKSALKEHMR-THX 24 (26)
T ss_pred CCCCCcchhCCHHHHHHHHH-Hhc
Confidence 69999999999999999997 665
No 123
>PLN02789 farnesyltranstransferase
Probab=71.27 E-value=20 Score=42.56 Aligned_cols=102 Identities=11% Similarity=-0.025 Sum_probs=80.9
Q ss_pred CCchHHHHHHHHHhhcC-ChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhh
Q 000686 16 FDTTAEGRAAIAAYDEG-DYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFL 94 (1351)
Q Consensus 16 ~~~~~e~~~al~~~~rg-~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l 94 (1351)
...++---|..-....| ...+|+.....++..+|.+.-+.+-.|-+..++... +..++++.+.+|..+
T Consensus 69 ~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~-----------~~~~el~~~~kal~~ 137 (320)
T PLN02789 69 GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPD-----------AANKELEFTRKILSL 137 (320)
T ss_pred hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCch-----------hhHHHHHHHHHHHHh
Confidence 33344444444444456 478999999999999999999988888887665421 134589999999999
Q ss_pred ccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCC
Q 000686 95 LSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGI 132 (1351)
Q Consensus 95 ~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i 132 (1351)
.|+....-..++-++..++ .|++++.-|.++|.+
T Consensus 138 dpkNy~AW~~R~w~l~~l~----~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 138 DAKNYHAWSHRQWVLRTLG----GWEDELEYCHQLLEE 171 (320)
T ss_pred CcccHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHH
Confidence 9999999999999999998 799999999999977
No 124
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=70.66 E-value=31 Score=40.61 Aligned_cols=106 Identities=8% Similarity=-0.141 Sum_probs=62.9
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhh------------cCCCCCc--------------c
Q 000686 23 RAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQ------------NNDHDGG--------------T 76 (1351)
Q Consensus 23 ~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~------------~d~~~~~--------------~ 76 (1351)
.-+......|++.+|++..++.....|....++...|.++.+..+- ..+.+.. .
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL 191 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 3355566777777777777777766666666666555555432110 0110000 0
Q ss_pred hhhHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCC
Q 000686 77 VRNYIEEAAMSALQASFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGI 132 (1351)
Q Consensus 77 K~~~L~~al~~~~~Aa~l~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i 132 (1351)
+..-+..|+..+.++....|++.......|.+++..+ .|++|+.-..+++..
T Consensus 192 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 192 ARGDLDAARALLKKALAADPQCVRASILLGDLALAQG----DYAAAIEALERVEEQ 243 (389)
T ss_pred hCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHH
Confidence 0011244777777777778877776666677776666 677777777777754
No 125
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=69.00 E-value=2.2 Score=32.16 Aligned_cols=22 Identities=18% Similarity=0.462 Sum_probs=19.9
Q ss_pred eecCccccccCChHHHHHhHHh
Q 000686 292 WECCDCSEKYGDWQSYMQHLCD 313 (1351)
Q Consensus 292 W~C~~Cs~kF~d~~~~~~Hl~~ 313 (1351)
|.|..|++.|.+...+.+|+..
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCcccCCCCcCCHHHHHHHHcc
Confidence 5799999999999999999865
No 126
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=68.16 E-value=35 Score=35.19 Aligned_cols=89 Identities=18% Similarity=0.159 Sum_probs=62.8
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhcCCcc---hhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCch
Q 000686 23 RAAIAAYDEGDYVGALKCIKNSESRYRKCP---FYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSST 99 (1351)
Q Consensus 23 ~~al~~~~rg~~~~Alk~~k~la~~~~~s~---~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl 99 (1351)
..++..+..|+..++-..+..++..||+++ ++.+..|.+++.. . -+..|+..+..+....|+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~----g---------~~~~A~~~l~~~~~~~~d~~ 82 (145)
T PF09976_consen 16 EQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQ----G---------DYDEAKAALEKALANAPDPE 82 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHC----C---------CHHHHHHHHHHHHhhCCCHH
Confidence 456677788999999999999999999884 4444444444432 1 23558888888888776553
Q ss_pred --HHHHH-HHHHHHHhhhcchHHHHHHHHHHH
Q 000686 100 --IIAYF-CACALYDLASFNREYYKVIRECNR 128 (1351)
Q Consensus 100 --~~a~f-~A~lL~~La~~~~~Y~~av~ec~R 128 (1351)
.++.+ .|++++..+ .|++|+.....
T Consensus 83 l~~~a~l~LA~~~~~~~----~~d~Al~~L~~ 110 (145)
T PF09976_consen 83 LKPLARLRLARILLQQG----QYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHHHHHHcC----CHHHHHHHHHh
Confidence 23333 688888877 89998888733
No 127
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=67.96 E-value=3.5 Score=30.72 Aligned_cols=21 Identities=19% Similarity=0.582 Sum_probs=19.1
Q ss_pred ecCccccccCChHHHHHhHHh
Q 000686 293 ECCDCSEKYGDWQSYMQHLCD 313 (1351)
Q Consensus 293 ~C~~Cs~kF~d~~~~~~Hl~~ 313 (1351)
.|..|++.|.+...|..|+..
T Consensus 3 ~C~~C~~~F~~~~~l~~H~~~ 23 (27)
T PF13912_consen 3 ECDECGKTFSSLSALREHKRS 23 (27)
T ss_dssp EETTTTEEESSHHHHHHHHCT
T ss_pred CCCccCCccCChhHHHHHhHH
Confidence 599999999999999999943
No 128
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=66.99 E-value=32 Score=41.80 Aligned_cols=103 Identities=13% Similarity=-0.011 Sum_probs=79.9
Q ss_pred CCCCCchHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcch-hhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHH
Q 000686 13 LPPFDTTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPF-YQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQA 91 (1351)
Q Consensus 13 ~~~~~~~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~-~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~A 91 (1351)
.+|.........|..+.++|++.+|....++....+|.+.+ +...++.+.+.. .+. ..|+..+.+.
T Consensus 113 ~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~----~~~---------~~Al~~l~~l 179 (409)
T TIGR00540 113 HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ----NEL---------HAARHGVDKL 179 (409)
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC----CCH---------HHHHHHHHHH
Confidence 34444566677888899999999999999999999998874 555455555442 222 3588889999
Q ss_pred hhhccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCC
Q 000686 92 SFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGI 132 (1351)
Q Consensus 92 a~l~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i 132 (1351)
....|++.......+.++..++ .|+++..--.+.+..
T Consensus 180 ~~~~P~~~~~l~ll~~~~~~~~----d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 180 LEMAPRHKEVLKLAEEAYIRSG----AWQALDDIIDNMAKA 216 (409)
T ss_pred HHhCCCCHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHc
Confidence 9999999999888888888888 898888776666644
No 129
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=66.60 E-value=33 Score=36.07 Aligned_cols=97 Identities=13% Similarity=-0.087 Sum_probs=66.1
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhcCCc---chhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCc
Q 000686 22 GRAAIAAYDEGDYVGALKCIKNSESRYRKC---PFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSS 98 (1351)
Q Consensus 22 ~~~al~~~~rg~~~~Alk~~k~la~~~~~s---~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~s 98 (1351)
...+......|++.+|+...+....-.|.+ +.++.--|.++..... ...|+..+.+|..+.|..
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~-------------~~eA~~~~~~Al~~~~~~ 105 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE-------------HTKALEYYFQALERNPFL 105 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCcCc
Confidence 455667778899999999999987776653 2345545555444322 245888999999999998
Q ss_pred hHHHHHHHHHHHHhhhc---chHHHHHHHHHHHHhC
Q 000686 99 TIIAYFCACALYDLASF---NREYYKVIRECNRALG 131 (1351)
Q Consensus 99 l~~a~f~A~lL~~La~~---~~~Y~~av~ec~RaL~ 131 (1351)
.......|.++..+|.. .+.|++++.-+.+|+.
T Consensus 106 ~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~ 141 (168)
T CHL00033 106 PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAE 141 (168)
T ss_pred HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHH
Confidence 88877788888866532 2246666555555543
No 130
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=65.53 E-value=36 Score=43.12 Aligned_cols=110 Identities=14% Similarity=-0.061 Sum_probs=66.3
Q ss_pred HHHHHHHhhcCC---hHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHH-----------------h---hc--CCCCCcc
Q 000686 22 GRAAIAAYDEGD---YVGALKCIKNSESRYRKCPFYQHAKAFILYKIA-----------------L---QN--NDHDGGT 76 (1351)
Q Consensus 22 ~~~al~~~~rg~---~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A-----------------~---~~--d~~~~~~ 76 (1351)
..+|+..+.+++ ..+|+.+.++.++.-|+.+.+|-.-+.++.... . .+ ++. +.
T Consensus 343 ~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~--~~ 420 (517)
T PRK10153 343 FYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV--LP 420 (517)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC--Ch
Confidence 445556655554 788998999999999888777765444332110 0 10 111 11
Q ss_pred h-----------hhHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCCCCCCCCC
Q 000686 77 V-----------RNYIEEAAMSALQASFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGIENPMEPE 139 (1351)
Q Consensus 77 K-----------~~~L~~al~~~~~Aa~l~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i~~P~DP~ 139 (1351)
. ..-...|...+.+|..|-|+ ...-.+.++.+...| .+++|+....||+.+ +|.+|.
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G----~~~eA~~~~~~A~~L-~P~~pt 488 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKG----DNRLAADAYSTAFNL-RPGENT 488 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcC----CHHHHHHHHHHHHhc-CCCCch
Confidence 0 11134566778888888884 433444466666666 788888888888766 466663
No 131
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=65.40 E-value=32 Score=36.17 Aligned_cols=80 Identities=18% Similarity=0.047 Sum_probs=65.6
Q ss_pred chHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhh---cCCCCCcchhhHHHHHHHHHHHHhhh
Q 000686 18 TTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQ---NNDHDGGTVRNYIEEAAMSALQASFL 94 (1351)
Q Consensus 18 ~~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~---~d~~~~~~K~~~L~~al~~~~~Aa~l 94 (1351)
...-..-++-....|.+.+|++..+.....+|..+..|..-|.++..+++. ..+. ..-..++..|+..+.+|..+
T Consensus 72 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~--~~A~~~~~~a~~~~~~a~~~ 149 (168)
T CHL00033 72 SYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDS--EIAEAWFDQAAEYWKQAIAL 149 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccH--HHHHHHHHHHHHHHHHHHHh
Confidence 345667778888999999999999999999999889999999999988753 3333 44456788899999999999
Q ss_pred ccCch
Q 000686 95 LSSST 99 (1351)
Q Consensus 95 ~p~sl 99 (1351)
.|+..
T Consensus 150 ~p~~~ 154 (168)
T CHL00033 150 APGNY 154 (168)
T ss_pred CcccH
Confidence 99776
No 132
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=65.29 E-value=28 Score=33.23 Aligned_cols=70 Identities=23% Similarity=0.210 Sum_probs=55.0
Q ss_pred chHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCc---chhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhh
Q 000686 18 TTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKC---PFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFL 94 (1351)
Q Consensus 18 ~~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s---~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l 94 (1351)
.......+....+.|++..|+...+.+...+|.. +.++..-|.++.++ .+. ..|+..+.++...
T Consensus 39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~---------~~A~~~~~~~~~~ 105 (119)
T TIGR02795 39 PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQEL----GDK---------EKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHh----CCh---------HHHHHHHHHHHHH
Confidence 3455668888999999999999999999999876 45677777776543 333 4588899999999
Q ss_pred ccCchH
Q 000686 95 LSSSTI 100 (1351)
Q Consensus 95 ~p~sl~ 100 (1351)
.|++..
T Consensus 106 ~p~~~~ 111 (119)
T TIGR02795 106 YPGSSA 111 (119)
T ss_pred CcCChh
Confidence 999864
No 133
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=64.66 E-value=35 Score=39.47 Aligned_cols=83 Identities=20% Similarity=0.185 Sum_probs=63.3
Q ss_pred CCCCCCchHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCc---chhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHH
Q 000686 12 PLPPFDTTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKC---PFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSA 88 (1351)
Q Consensus 12 ~~~~~~~~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s---~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~ 88 (1351)
|.+|.-=.+...-|-...+-|++..|+..+.++...||.+ .-+.+++|-.. -..++++ +-.+.+-++|...+
T Consensus 65 p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~---~~~i~~~--~rDq~~~~~A~~~f 139 (254)
T COG4105 65 PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSY---FFQIDDV--TRDQSAARAAFAAF 139 (254)
T ss_pred CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH---hccCCcc--ccCHHHHHHHHHHH
Confidence 3344444556667777888888888888888888888655 45566666663 3456777 77789999999999
Q ss_pred HHHhhhccCch
Q 000686 89 LQASFLLSSST 99 (1351)
Q Consensus 89 ~~Aa~l~p~sl 99 (1351)
..-+..+|+|-
T Consensus 140 ~~~i~ryPnS~ 150 (254)
T COG4105 140 KELVQRYPNSR 150 (254)
T ss_pred HHHHHHCCCCc
Confidence 99999999996
No 134
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=64.14 E-value=67 Score=42.10 Aligned_cols=116 Identities=12% Similarity=-0.011 Sum_probs=84.0
Q ss_pred CchHHHHHHHHHhhc-CChHHHHHHHHHHHHhc-----CCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHH
Q 000686 17 DTTAEGRAAIAAYDE-GDYVGALKCIKNSESRY-----RKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQ 90 (1351)
Q Consensus 17 ~~~~e~~~al~~~~r-g~~~~Alk~~k~la~~~-----~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~ 90 (1351)
||..---++.-+.++ |+..+++.-|.+.++.+ .--|+.|++.|--+=.+|+.-... .-+-+++.-+|+++.+
T Consensus 392 ~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~--seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 392 DISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLK--SERDALHKKSLQALEE 469 (799)
T ss_pred cchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCCh--HHHHHHHHHHHHHHHH
Confidence 344444444444444 44666777777777655 236899999998888888888878 8888999999999999
Q ss_pred HhhhccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCCCCCCCC
Q 000686 91 ASFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGIENPMEP 138 (1351)
Q Consensus 91 Aa~l~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i~~P~DP 138 (1351)
|+...|++. .+.||+-+-|-+- +.-..|+.-|+|+|.+..-.++
T Consensus 470 av~~d~~dp-~~if~lalq~A~~---R~l~sAl~~~~eaL~l~~~~~~ 513 (799)
T KOG4162|consen 470 AVQFDPTDP-LVIFYLALQYAEQ---RQLTSALDYAREALALNRGDSA 513 (799)
T ss_pred HHhcCCCCc-hHHHHHHHHHHHH---HhHHHHHHHHHHHHHhcCCccH
Confidence 999999999 5555555554333 2578999999999988543333
No 135
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=63.40 E-value=32 Score=41.69 Aligned_cols=93 Identities=14% Similarity=-0.011 Sum_probs=71.1
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHH
Q 000686 22 GRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTII 101 (1351)
Q Consensus 22 ~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~ 101 (1351)
......-+..|+..+|++.++.+..+||+++.++...|.+++..-.- ..|.+.+.++..+.|++...
T Consensus 298 l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~-------------~~A~~~le~al~~~P~~~~~ 364 (398)
T PRK10747 298 LVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEW-------------QEASLAFRAALKQRPDAYDY 364 (398)
T ss_pred HHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH-------------HHHHHHHHHHHhcCCCHHHH
Confidence 33445555668899999999999999999999999888888765432 34889999999999998663
Q ss_pred HHHHHHHHHHhhhcchHHHHHHHHHHHHhCC
Q 000686 102 AYFCACALYDLASFNREYYKVIRECNRALGI 132 (1351)
Q Consensus 102 a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i 132 (1351)
...|.++-.+| .-++|..--++||..
T Consensus 365 -~~La~~~~~~g----~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 365 -AWLADALDRLH----KPEEAAAMRRDGLML 390 (398)
T ss_pred -HHHHHHHHHcC----CHHHHHHHHHHHHhh
Confidence 35777777777 566666666677765
No 136
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=63.36 E-value=17 Score=45.11 Aligned_cols=70 Identities=17% Similarity=-0.054 Sum_probs=56.5
Q ss_pred HhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHH---HHHHHHHHHHhhhcchHHHHH
Q 000686 46 SRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTII---AYFCACALYDLASFNREYYKV 122 (1351)
Q Consensus 46 ~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~---a~f~A~lL~~La~~~~~Y~~a 122 (1351)
...|..+.+|+-.|.+++++.+- ..|+.++++|..+.|++... -+..|..+..+| .+++|
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGry-------------eEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LG----r~dEA 131 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRV-------------KDALAQFETALELNPNPDEAQAAYYNKACCHAYRE----EGKKA 131 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCH-------------HHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcC----CHHHH
Confidence 34578888999999988776443 44999999999999999864 566677777777 89999
Q ss_pred HHHHHHHhCC
Q 000686 123 IRECNRALGI 132 (1351)
Q Consensus 123 v~ec~RaL~i 132 (1351)
+....||+.+
T Consensus 132 la~LrrALel 141 (453)
T PLN03098 132 ADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHh
Confidence 9999999987
No 137
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=63.17 E-value=12 Score=47.17 Aligned_cols=100 Identities=13% Similarity=0.189 Sum_probs=80.0
Q ss_pred CchHHHHHHHHHh--hcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhh
Q 000686 17 DTTAEGRAAIAAY--DEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFL 94 (1351)
Q Consensus 17 ~~~~e~~~al~~~--~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l 94 (1351)
-|..++..+|+.+ -.|++.+|..+-+-...--|+..++.. ++...+.|+.+. ..||.+|+||..|
T Consensus 427 ~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWN-------RLGAtLAN~~~s------~EAIsAY~rALqL 493 (579)
T KOG1125|consen 427 KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWN-------RLGATLANGNRS------EEAISAYNRALQL 493 (579)
T ss_pred CCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHH-------HhhHHhcCCccc------HHHHHHHHHHHhc
Confidence 3666777777665 457789999999888888898877665 444444444111 3499999999999
Q ss_pred ccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCCC
Q 000686 95 LSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGIE 133 (1351)
Q Consensus 95 ~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i~ 133 (1351)
-|+=++.=+=.|.++..|| .|++|+..--+||.|.
T Consensus 494 qP~yVR~RyNlgIS~mNlG----~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 494 QPGYVRVRYNLGISCMNLG----AYKEAVKHLLEALSMQ 528 (579)
T ss_pred CCCeeeeehhhhhhhhhhh----hHHHHHHHHHHHHHhh
Confidence 9999999999999999999 9999999999999984
No 138
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=63.13 E-value=5.1 Score=30.17 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=16.4
Q ss_pred ecCccccccCChHHHHHhHH
Q 000686 293 ECCDCSEKYGDWQSYMQHLC 312 (1351)
Q Consensus 293 ~C~~Cs~kF~d~~~~~~Hl~ 312 (1351)
.||.|+.+| ..+++..|+-
T Consensus 4 ~C~~CgR~F-~~~~l~~H~~ 22 (25)
T PF13913_consen 4 PCPICGRKF-NPDRLEKHEK 22 (25)
T ss_pred cCCCCCCEE-CHHHHHHHHH
Confidence 599999999 7888888863
No 139
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=61.79 E-value=25 Score=37.19 Aligned_cols=67 Identities=19% Similarity=0.069 Sum_probs=55.7
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHH
Q 000686 19 TAEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMS 87 (1351)
Q Consensus 19 ~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~ 87 (1351)
.+...+|.+++..|++.-|+.++..++.-.|...-+..+.+.++-+++...+++ ..+--||-+|.+.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~~--~~Rn~yL~~A~EL 137 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSENA--NWRNYYLTGAKEL 137 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SSH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccCH--HHHHHHHHHHHHH
Confidence 345567788899999999999999999999999999999999999999999998 8888788877764
No 140
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=61.62 E-value=18 Score=46.33 Aligned_cols=105 Identities=17% Similarity=0.124 Sum_probs=83.0
Q ss_pred hcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHH------------HHhhcCCC-------CC--cchhhHHHHHHHHH
Q 000686 30 DEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYK------------IALQNNDH-------DG--GTVRNYIEEAAMSA 88 (1351)
Q Consensus 30 ~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~------------~A~~~d~~-------~~--~~K~~~L~~al~~~ 88 (1351)
-.++|..|+|.+++.+.--|.-+-+|.++||=+.. .|-+.+.- -| ..|+-=+..|.--+
T Consensus 433 LQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~f 512 (638)
T KOG1126|consen 433 LQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHF 512 (638)
T ss_pred hhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHH
Confidence 35679999999999999999999999999986533 23333311 00 34555566677789
Q ss_pred HHHhhhccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCCCCCCCCC
Q 000686 89 LQASFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGIENPMEPE 139 (1351)
Q Consensus 89 ~~Aa~l~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i~~P~DP~ 139 (1351)
.+|++.-|.+.+|-..+-+.+..++ .+++|+.--++|+.+ +|.||.
T Consensus 513 qkA~~INP~nsvi~~~~g~~~~~~k----~~d~AL~~~~~A~~l-d~kn~l 558 (638)
T KOG1126|consen 513 QKAVEINPSNSVILCHIGRIQHQLK----RKDKALQLYEKAIHL-DPKNPL 558 (638)
T ss_pred HhhhcCCccchhHHhhhhHHHHHhh----hhhHHHHHHHHHHhc-CCCCch
Confidence 9999999999999999999999999 899999999999977 366665
No 141
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=61.31 E-value=84 Score=41.85 Aligned_cols=123 Identities=18% Similarity=0.072 Sum_probs=92.4
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHhcC-CcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHHH
Q 000686 24 AAIAAYDEGDYVGALKCIKNSESRYR-KCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTIIA 102 (1351)
Q Consensus 24 ~al~~~~rg~~~~Alk~~k~la~~~~-~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~a 102 (1351)
.|-...++|++..|++.+-.+..+-+ +.+.+...+|-++..+..- ..|.++|-++..+.|+.+..=
T Consensus 420 ~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~-------------e~A~e~y~kvl~~~p~~~D~R 486 (895)
T KOG2076|consen 420 LADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY-------------EEAIEFYEKVLILAPDNLDAR 486 (895)
T ss_pred HHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH-------------HHHHHHHHHHHhcCCCchhhh
Confidence 45556789999999999999988876 3566666677666666533 449999999999999999988
Q ss_pred HHHHHHHHHhhhcchHHHHHHHHHHHHhCCCCCCCCCcCccccCCCCchhhHHHHHHHHHHHHHHHH
Q 000686 103 YFCACALYDLASFNREYYKVIRECNRALGIENPMEPERSSFVFKDPSQEWGIEKTKQELRELMKKSE 169 (1351)
Q Consensus 103 ~f~A~lL~~La~~~~~Y~~av~ec~RaL~i~~P~DP~~~~l~~~~~~~~~ri~~~k~eL~~Li~ka~ 169 (1351)
--.|.++..+| ..++|+. + +++|.+|........+-.|+.||.-.+..+..-+.+.+
T Consensus 487 i~Lasl~~~~g----~~EkalE----t--L~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E 543 (895)
T KOG2076|consen 487 ITLASLYQQLG----NHEKALE----T--LEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE 543 (895)
T ss_pred hhHHHHHHhcC----CHHHHHH----H--HhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence 88899999999 5554432 2 25566776666667788899999877766666666655
No 142
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=61.17 E-value=77 Score=42.17 Aligned_cols=110 Identities=14% Similarity=0.004 Sum_probs=84.2
Q ss_pred chHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHH------------HhhcCCCCC---------cc
Q 000686 18 TTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKI------------ALQNNDHDG---------GT 76 (1351)
Q Consensus 18 ~~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~------------A~~~d~~~~---------~~ 76 (1351)
+++=-.-|--.+-||+..+|.++.++.+.--|.-+.++..-|.|+-++ |.-+++.+- ..
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 455555566778889999999999999999998888888877777665 333333311 22
Q ss_pred hhhHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhC
Q 000686 77 VRNYIEEAAMSALQASFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALG 131 (1351)
Q Consensus 77 K~~~L~~al~~~~~Aa~l~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~ 131 (1351)
++-++..|.=||+||..+-|....+-.=++.++-.+| .+.+|+.=-.+.|-
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G----~~~~Am~~f~~l~~ 269 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTG----DLKRAMETFLQLLQ 269 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC----hHHHHHHHHHHHHh
Confidence 3446788889999999999999999999999998889 77777776666663
No 143
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=60.62 E-value=1.3e+02 Score=30.71 Aligned_cols=112 Identities=20% Similarity=0.050 Sum_probs=70.2
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhH--------hhHHH---HHHHHhhcCCCCCcchhhHHHHHHHH
Q 000686 19 TAEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQH--------AKAFI---LYKIALQNNDHDGGTVRNYIEEAAMS 87 (1351)
Q Consensus 19 ~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~--------~qg~i---~~~~A~~~d~~~~~~K~~~L~~al~~ 87 (1351)
...+..|......|.+..++...++.++-|.+..+.-. ....+ +......+-.. -....-...|+..
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~--~~~~~~~~~a~~~ 84 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEA--LLEAGDYEEALRL 84 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHH--HHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH--HHhccCHHHHHHH
Confidence 34567788888999999999999999999943332221 11111 11111111111 1112234679999
Q ss_pred HHHHhhhccCchHHHHHHHHHHHHhhhcch---HHHHHHHHHHHHhCC
Q 000686 88 ALQASFLLSSSTIIAYFCACALYDLASFNR---EYYKVIRECNRALGI 132 (1351)
Q Consensus 88 ~~~Aa~l~p~sl~~a~f~A~lL~~La~~~~---~Y~~av~ec~RaL~i 132 (1351)
+.++..+.|-+..+....-+++..+|+... .|+++.+.-.+-|++
T Consensus 85 ~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~ 132 (146)
T PF03704_consen 85 LQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGI 132 (146)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999997755 377777777777766
No 144
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=60.24 E-value=28 Score=36.93 Aligned_cols=81 Identities=21% Similarity=0.067 Sum_probs=63.6
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhh---cCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 000686 20 AEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQ---NNDHDGGTVRNYIEEAAMSALQASFLLS 96 (1351)
Q Consensus 20 ~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~---~d~~~~~~K~~~L~~al~~~~~Aa~l~p 96 (1351)
.....+....+.|++.+|+....+....+|..+.++..-|.++..++.. ..+. .....++..|++++.+|..+.|
T Consensus 74 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~--~~A~~~~~~A~~~~~~a~~~~p 151 (172)
T PRK02603 74 ILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQ--DEAEALFDKAAEYWKQAIRLAP 151 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCH--HHHHHHHHHHHHHHHHHHhhCc
Confidence 4445566678889999999999999999999999998889999887542 2233 4556678889999999999999
Q ss_pred CchHHH
Q 000686 97 SSTIIA 102 (1351)
Q Consensus 97 ~sl~~a 102 (1351)
+....+
T Consensus 152 ~~~~~~ 157 (172)
T PRK02603 152 NNYIEA 157 (172)
T ss_pred hhHHHH
Confidence 985333
No 145
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=59.92 E-value=9.5 Score=28.73 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=25.3
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhcCCc
Q 000686 23 RAAIAAYDEGDYVGALKCIKNSESRYRKC 51 (1351)
Q Consensus 23 ~~al~~~~rg~~~~Alk~~k~la~~~~~s 51 (1351)
..|.-..+.|+..+|++..+.++.+||+|
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 34666777899999999999999999987
No 146
>PHA02768 hypothetical protein; Provisional
Probab=58.29 E-value=6.1 Score=35.44 Aligned_cols=23 Identities=39% Similarity=0.671 Sum_probs=21.1
Q ss_pred ecCccccccCChHHHHHhHHhhcc
Q 000686 293 ECCDCSEKYGDWQSYMQHLCDFHD 316 (1351)
Q Consensus 293 ~C~~Cs~kF~d~~~~~~Hl~~eH~ 316 (1351)
.|+.|++.|+....|..|+.- |.
T Consensus 7 ~C~~CGK~Fs~~~~L~~H~r~-H~ 29 (55)
T PHA02768 7 ECPICGEIYIKRKSMITHLRK-HN 29 (55)
T ss_pred CcchhCCeeccHHHHHHHHHh-cC
Confidence 799999999999999999976 65
No 147
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=57.89 E-value=8.8 Score=30.57 Aligned_cols=33 Identities=15% Similarity=-0.001 Sum_probs=29.3
Q ss_pred HHHHHhhhccCchHHHHHHHHHHHHhhhcchHHHHHH
Q 000686 87 SALQASFLLSSSTIIAYFCACALYDLASFNREYYKVI 123 (1351)
Q Consensus 87 ~~~~Aa~l~p~sl~~a~f~A~lL~~La~~~~~Y~~av 123 (1351)
++.+|+++.|+....-.-+|.+|...| .|++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g----~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQG----DYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCc----CHHhhc
Confidence 478999999999999999999999888 777764
No 148
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.16 E-value=24 Score=42.20 Aligned_cols=102 Identities=17% Similarity=0.020 Sum_probs=62.4
Q ss_pred HHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHHHHH
Q 000686 25 AIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTIIAYF 104 (1351)
Q Consensus 25 al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~a~f 104 (1351)
|--.|.||++.+|--.=.++..+||..-++--+.-+.++...+. +.|..-+...+.--. .--|=+.-+.-.
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~------~~~k~ai~kIip~wn---~dlp~~sYv~Gm 180 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQ------IGKKNAIEKIIPKWN---ADLPCYSYVHGM 180 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccch------hhhhhHHHHhccccC---CCCcHHHHHHHH
Confidence 34467899999998888899999997654433333333333332 222222221111111 001111234456
Q ss_pred HHHHHHHhhhcchHHHHHHHHHHHHhCCCCCCCCCc
Q 000686 105 CACALYDLASFNREYYKVIRECNRALGIENPMEPER 140 (1351)
Q Consensus 105 ~A~lL~~La~~~~~Y~~av~ec~RaL~i~~P~DP~~ 140 (1351)
||..|.++| .|++|..-+.|||.| ||+|-.-
T Consensus 181 yaFgL~E~g----~y~dAEk~A~ralqi-N~~D~Wa 211 (491)
T KOG2610|consen 181 YAFGLEECG----IYDDAEKQADRALQI-NRFDCWA 211 (491)
T ss_pred HHhhHHHhc----cchhHHHHHHhhccC-CCcchHH
Confidence 888899999 999999999999998 5676653
No 149
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=55.20 E-value=1.2e+02 Score=38.79 Aligned_cols=106 Identities=11% Similarity=0.120 Sum_probs=73.8
Q ss_pred HHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHH------------HhhcCCCCCcchhhH---------HHHHH
Q 000686 27 AAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKI------------ALQNNDHDGGTVRNY---------IEEAA 85 (1351)
Q Consensus 27 ~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~------------A~~~d~~~~~~K~~~---------L~~al 85 (1351)
-..+.|+..+=.-+.-+|+.+||++|+-.+.-|.-++-+ |..+|+++|-.-..| ...|.
T Consensus 287 ~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAm 366 (611)
T KOG1173|consen 287 CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAM 366 (611)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHH
Confidence 455677777888889999999999999888888766544 444556555333222 34589
Q ss_pred HHHHHHhhhccCchHHHHHHHHHHHHhhhc---chHHHHHHHHHHHHhCCCCCCCCCc
Q 000686 86 MSALQASFLLSSSTIIAYFCACALYDLASF---NREYYKVIRECNRALGIENPMEPER 140 (1351)
Q Consensus 86 ~~~~~Aa~l~p~sl~~a~f~A~lL~~La~~---~~~Y~~av~ec~RaL~i~~P~DP~~ 140 (1351)
.|+..|+.|+|++-.=..|.+.=+-.+.+. .++|..|+..| |.||--
T Consensus 367 aaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~--------P~Dplv 416 (611)
T KOG1173|consen 367 AAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA--------PSDPLV 416 (611)
T ss_pred HHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC--------CCcchh
Confidence 999999999999977666666555444432 22466666665 999973
No 150
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=54.29 E-value=25 Score=42.17 Aligned_cols=101 Identities=11% Similarity=0.007 Sum_probs=84.4
Q ss_pred CCCCchHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhh
Q 000686 14 PPFDTTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASF 93 (1351)
Q Consensus 14 ~~~~~~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~ 93 (1351)
+|.++.+..+-.-..+-||..+.||-.--..+.-.|++..+.+-+|++++.+.+. +.||..+++..+
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGks-------------k~al~Dl~rVle 100 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKS-------------KAALQDLSRVLE 100 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCC-------------ccchhhHHHHHh
Confidence 4456666666677788999999999888888888899999999999999999876 338999999999
Q ss_pred hccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhC
Q 000686 94 LLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALG 131 (1351)
Q Consensus 94 l~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~ 131 (1351)
|-|+=..--.=++.+|+..| .|+.|...-..-|.
T Consensus 101 lKpDF~~ARiQRg~vllK~G----ele~A~~DF~~vl~ 134 (504)
T KOG0624|consen 101 LKPDFMAARIQRGVVLLKQG----ELEQAEADFDQVLQ 134 (504)
T ss_pred cCccHHHHHHHhchhhhhcc----cHHHHHHHHHHHHh
Confidence 99997776677888898888 88888888766663
No 151
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=54.11 E-value=3.1e+02 Score=33.70 Aligned_cols=87 Identities=18% Similarity=0.001 Sum_probs=66.1
Q ss_pred HHHHHHhh---cCChHHHHHHHHH-HHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCc
Q 000686 23 RAAIAAYD---EGDYVGALKCIKN-SESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSS 98 (1351)
Q Consensus 23 ~~al~~~~---rg~~~~Alk~~k~-la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~s 98 (1351)
.-|++..+ -|++.+|+..+.. +....+.+|-...+-|.|+-..+...... ...+|..|++.|.+|-++.|+-
T Consensus 184 ~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~----d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 184 QYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFT----DRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCcc----chHHHHHHHHHHHHHHcCCccc
Confidence 45777778 7899999999999 77777889999999999999998765433 3345999999999999999643
Q ss_pred hHHHHHHHHHHHHhhh
Q 000686 99 TIIAYFCACALYDLAS 114 (1351)
Q Consensus 99 l~~a~f~A~lL~~La~ 114 (1351)
- -.-=+|-+|...|.
T Consensus 260 Y-~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 260 Y-SGINAATLLMLAGH 274 (374)
T ss_pred c-chHHHHHHHHHcCC
Confidence 2 12223445555554
No 152
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.97 E-value=1.5e+02 Score=34.78 Aligned_cols=112 Identities=21% Similarity=0.119 Sum_probs=82.9
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHH-----------hhcCCCCCcchhhHHH---------
Q 000686 23 RAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIA-----------LQNNDHDGGTVRNYIE--------- 82 (1351)
Q Consensus 23 ~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A-----------~~~d~~~~~~K~~~L~--------- 82 (1351)
..+++++.+|...-|.++.+.|-.++|+|.++-.+.|..+-..+ ..-||| .+-..|-+
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddp--t~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDP--TDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCc--chhHHHHHHHHHHHHcC
Confidence 35677778888889999999999999999999988885443222 222345 33333322
Q ss_pred ---HHHHHHHHHhhhccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCCCCCCCCCcC
Q 000686 83 ---EAAMSALQASFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGIENPMEPERS 141 (1351)
Q Consensus 83 ---~al~~~~~Aa~l~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i~~P~DP~~~ 141 (1351)
.|+.....=...||++.+.=+-.|-+++.++ +|++|+- |-.-+=..+|..|.-+
T Consensus 135 K~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~----~f~kA~f-ClEE~ll~~P~n~l~f 191 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEG----DFEKAAF-CLEELLLIQPFNPLYF 191 (289)
T ss_pred CcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHh----HHHHHHH-HHHHHHHcCCCcHHHH
Confidence 2455566667899999999999999999999 8888763 6666667789999866
No 153
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=53.75 E-value=62 Score=38.27 Aligned_cols=88 Identities=17% Similarity=0.102 Sum_probs=68.8
Q ss_pred HhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHHHHHHHH
Q 000686 28 AYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTIIAYFCAC 107 (1351)
Q Consensus 28 ~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~a~f~A~ 107 (1351)
..+.+++.+|+..=...+.--|..|..|.-++.++.+|..- ..||....+|+.+.|..-..-.-.-.
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~-------------~~AVkDce~Al~iDp~yskay~RLG~ 157 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEY-------------EDAVKDCESALSIDPHYSKAYGRLGL 157 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcch-------------HHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 34556688888888888887899999999888888877633 23888899899998887766555566
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhCC
Q 000686 108 ALYDLASFNREYYKVIRECNRALGI 132 (1351)
Q Consensus 108 lL~~La~~~~~Y~~av~ec~RaL~i 132 (1351)
+++-+| .|++|+.--++||.|
T Consensus 158 A~~~~g----k~~~A~~aykKaLel 178 (304)
T KOG0553|consen 158 AYLALG----KYEEAIEAYKKALEL 178 (304)
T ss_pred HHHccC----cHHHHHHHHHhhhcc
Confidence 666666 899999999999977
No 154
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=53.46 E-value=52 Score=38.09 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=53.2
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhh-cCCCCCcchhhHHHHHHHHHHHHhhhccCchHH
Q 000686 23 RAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQ-NNDHDGGTVRNYIEEAAMSALQASFLLSSSTII 101 (1351)
Q Consensus 23 ~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~-~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~ 101 (1351)
..+++-++.||..+|.+.-+.+.++||+++.. -|+.+...+|-= ..+ ..-|+..+.|-..++|++..+
T Consensus 39 ~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~--~qa~l~l~yA~Yk~~~---------y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 39 NEGLTELQKGNYEEAIKYFEALDSRHPFSPYS--EQAQLDLAYAYYKNGE---------YDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc--HHHHHHHHHHHHhccc---------HHHHHHHHHHHHHhCCCCCCh
Confidence 56888999999999999999999999988877 344444444321 222 245888999999999999876
Q ss_pred HH
Q 000686 102 AY 103 (1351)
Q Consensus 102 a~ 103 (1351)
..
T Consensus 108 dY 109 (254)
T COG4105 108 DY 109 (254)
T ss_pred hH
Confidence 54
No 155
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=53.25 E-value=78 Score=39.52 Aligned_cols=70 Identities=11% Similarity=-0.117 Sum_probs=58.1
Q ss_pred CCCCCchHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcch---hhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHH
Q 000686 13 LPPFDTTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPF---YQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSAL 89 (1351)
Q Consensus 13 ~~~~~~~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~---~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~ 89 (1351)
--|-+..+....+......|++.+|+...+...+-.|+.+- +|+-.|..+..+.+. ..|++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~-------------dEAla~Lr 136 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEG-------------KKAADCLR 136 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCH-------------HHHHHHHH
Confidence 34667788889999999999999999999999999999884 488888888777544 34899999
Q ss_pred HHhhhc
Q 000686 90 QASFLL 95 (1351)
Q Consensus 90 ~Aa~l~ 95 (1351)
+|..+.
T Consensus 137 rALels 142 (453)
T PLN03098 137 TALRDY 142 (453)
T ss_pred HHHHhc
Confidence 888873
No 156
>PRK14574 hmsH outer membrane protein; Provisional
Probab=51.34 E-value=77 Score=42.56 Aligned_cols=107 Identities=13% Similarity=0.053 Sum_probs=71.7
Q ss_pred CCCCCCCchHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcc-hhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHH
Q 000686 11 PPLPPFDTTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKCP-FYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSAL 89 (1351)
Q Consensus 11 ~~~~~~~~~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~-~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~ 89 (1351)
-++-|.-+...=+.|+-.++.|++..|+...++.....|.++ .++ .. +.++....+. ..|+..+.
T Consensus 27 ~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~---dl--l~l~~~~G~~---------~~A~~~~e 92 (822)
T PRK14574 27 FVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD---DW--LQIAGWAGRD---------QEVIDVYE 92 (822)
T ss_pred cccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH---HH--HHHHHHcCCc---------HHHHHHHH
Confidence 344555566777889999999999999999999999999885 444 22 2222222222 23666677
Q ss_pred HHhhhccCchHHHHHH--HHHHHHhhhcchHHHHHHHHHHHHhCCCCCCCC
Q 000686 90 QASFLLSSSTIIAYFC--ACALYDLASFNREYYKVIRECNRALGIENPMEP 138 (1351)
Q Consensus 90 ~Aa~l~p~sl~~a~f~--A~lL~~La~~~~~Y~~av~ec~RaL~i~~P~DP 138 (1351)
+|+ .|...-.-.+. |+++...+ .|++|+.-.+++|... |.+|
T Consensus 93 ka~--~p~n~~~~~llalA~ly~~~g----dyd~Aiely~kaL~~d-P~n~ 136 (822)
T PRK14574 93 RYQ--SSMNISSRGLASAARAYRNEK----RWDQALALWQSSLKKD-PTNP 136 (822)
T ss_pred Hhc--cCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhhC-CCCH
Confidence 776 44444444444 66777667 8889998888888663 4443
No 157
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=51.27 E-value=64 Score=37.85 Aligned_cols=94 Identities=17% Similarity=-0.006 Sum_probs=71.3
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHHHH
Q 000686 24 AAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTIIAY 103 (1351)
Q Consensus 24 ~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~a~ 103 (1351)
.+.-.++-|...-|.+..+.+..-.+.+.+.+..++.|-+..+. +.. ..|.-.|..-...+|.+..+..
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~--e~~---------~~A~y~f~El~~~~~~t~~~ln 205 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGG--EKY---------QDAFYIFEELSDKFGSTPKLLN 205 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTT--TCC---------CHHHHHHHHHHCCS--SHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCc--hhH---------HHHHHHHHHHHhccCCCHHHHH
Confidence 44555666667777777777766668999999999987666554 443 3477788888889999999999
Q ss_pred HHHHHHHHhhhcchHHHHHHHHHHHHhCC
Q 000686 104 FCACALYDLASFNREYYKVIRECNRALGI 132 (1351)
Q Consensus 104 f~A~lL~~La~~~~~Y~~av~ec~RaL~i 132 (1351)
..|.+.+.+| .|++|..-...||..
T Consensus 206 g~A~~~l~~~----~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 206 GLAVCHLQLG----HYEEAEELLEEALEK 230 (290)
T ss_dssp HHHHHHHHCT-----HHHHHHHHHHHCCC
T ss_pred HHHHHHHHhC----CHHHHHHHHHHHHHh
Confidence 9999999999 999999999999964
No 158
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=50.85 E-value=40 Score=37.24 Aligned_cols=76 Identities=14% Similarity=0.035 Sum_probs=57.5
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhc-------CCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhh
Q 000686 22 GRAAIAAYDEGDYVGALKCIKNSESRY-------RKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFL 94 (1351)
Q Consensus 22 ~~~al~~~~rg~~~~Alk~~k~la~~~-------~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l 94 (1351)
+-+-+...+..+..+|.+++++.++.+ |+-..++.-=|..+..+|.-+.+. ..-.-|...|.++|.+|+.+
T Consensus 32 G~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~--~~A~~~F~kA~~~FqkAv~~ 109 (186)
T PF06552_consen 32 GGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDT--AEAEEYFEKATEYFQKAVDE 109 (186)
T ss_dssp HHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---H--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCCh--HHHHHHHHHHHHHHHHHHhc
Confidence 344455555556668888999999888 999999999999999999988877 77778899999999999999
Q ss_pred ccCch
Q 000686 95 LSSST 99 (1351)
Q Consensus 95 ~p~sl 99 (1351)
-|++-
T Consensus 110 ~P~ne 114 (186)
T PF06552_consen 110 DPNNE 114 (186)
T ss_dssp -TT-H
T ss_pred CCCcH
Confidence 99863
No 159
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.92 E-value=1.2e+02 Score=35.33 Aligned_cols=95 Identities=20% Similarity=0.127 Sum_probs=73.4
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCc---chhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhc
Q 000686 19 TAEGRAAIAAYDEGDYVGALKCIKNSESRYRKC---PFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLL 95 (1351)
Q Consensus 19 ~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s---~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~ 95 (1351)
+.+=..|++.+.-|.+..|-..-.+++.+||+| +.+|+--|..+|.+..-.+ |...|.+++.-+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~-------------Aa~~f~~~~k~~ 208 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYED-------------AAYIFARVVKDY 208 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchH-------------HHHHHHHHHHhC
Confidence 447899999999999999999999999999865 7889999999988765432 677777888888
Q ss_pred cCchHH---HHHHHHHHHHhhhcch---HHHHHHHHH
Q 000686 96 SSSTII---AYFCACALYDLASFNR---EYYKVIREC 126 (1351)
Q Consensus 96 p~sl~~---a~f~A~lL~~La~~~~---~Y~~av~ec 126 (1351)
|.|... -.=.|..+..|++.-. .|++++.+-
T Consensus 209 P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 209 PKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred CCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 888754 3335667777775533 366666664
No 160
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=49.40 E-value=1.5e+02 Score=40.00 Aligned_cols=76 Identities=11% Similarity=-0.033 Sum_probs=51.4
Q ss_pred HHHHHHHHhhcC-CCCCcchhhH-------HHHHHHHHHHHhhhcc--CchHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Q 000686 59 AFILYKIALQNN-DHDGGTVRNY-------IEEAAMSALQASFLLS--SSTIIAYFCACALYDLASFNREYYKVIRECNR 128 (1351)
Q Consensus 59 g~i~~~~A~~~d-~~~~~~K~~~-------L~~al~~~~~Aa~l~p--~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~R 128 (1351)
+.||-++...+. +++.-.-..| -..|++.|.....-|- ++..+-+..|+++|..| .|++|+.-..+
T Consensus 666 ~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~----~~~eak~~ll~ 741 (1018)
T KOG2002|consen 666 RDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAG----KLQEAKEALLK 741 (1018)
T ss_pred HHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhh----hHHHHHHHHHH
Confidence 345666655555 2322222222 2447777777766665 56788889999999999 79888888888
Q ss_pred HhCCCCCCCCC
Q 000686 129 ALGIENPMEPE 139 (1351)
Q Consensus 129 aL~i~~P~DP~ 139 (1351)
|+.. .|.||.
T Consensus 742 a~~~-~p~~~~ 751 (1018)
T KOG2002|consen 742 ARHL-APSNTS 751 (1018)
T ss_pred HHHh-CCccch
Confidence 8865 477776
No 161
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=49.32 E-value=14 Score=32.85 Aligned_cols=26 Identities=19% Similarity=0.112 Sum_probs=21.0
Q ss_pred eecCccccccCChHHHHHhHHhhccc
Q 000686 292 WECCDCSEKYGDWQSYMQHLCDFHDL 317 (1351)
Q Consensus 292 W~C~~Cs~kF~d~~~~~~Hl~~eH~~ 317 (1351)
=.||.|+..+.....++.||+--|..
T Consensus 25 atCP~C~a~~~~srnLrRHle~~H~~ 50 (54)
T PF09237_consen 25 ATCPICGAVIRQSRNLRRHLEIRHFK 50 (54)
T ss_dssp EE-TTT--EESSHHHHHHHHHHHTTT
T ss_pred CCCCcchhhccchhhHHHHHHHHhcc
Confidence 47999999999999999999999974
No 162
>PF13945 NST1: Salt tolerance down-regulator
Probab=47.98 E-value=8.4 Score=42.60 Aligned_cols=31 Identities=35% Similarity=0.667 Sum_probs=25.5
Q ss_pred hchhhhhHHhhhhccCCHHHHcceeEEehHHH
Q 000686 232 NLEKGNVAKSFWNNELSAEQKRSLFRVKIEDL 263 (1351)
Q Consensus 232 ~~~~~~~~r~yW~~~ls~e~kr~FL~V~i~~L 263 (1351)
..+....++.||. +|+.++||++++|.=+.+
T Consensus 100 s~eEre~LkeFW~-SL~eeERr~LVkIEKe~V 130 (190)
T PF13945_consen 100 SQEEREKLKEFWE-SLSEEERRSLVKIEKEAV 130 (190)
T ss_pred hHHHHHHHHHHHH-ccCHHHHHHHHHhhHHHH
Confidence 3455678999999 999999999999975443
No 163
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=47.72 E-value=6.4 Score=37.34 Aligned_cols=27 Identities=26% Similarity=0.561 Sum_probs=0.0
Q ss_pred cCccccccCChHHHHHhHHhhccccCc
Q 000686 294 CCDCSEKYGDWQSYMQHLCDFHDLRIH 320 (1351)
Q Consensus 294 C~~Cs~kF~d~~~~~~Hl~~eH~~~l~ 320 (1351)
|..|...|.+...++.||...|.-.+.
T Consensus 2 C~~C~~~f~~~~~l~~H~~~~H~~~~~ 28 (100)
T PF12756_consen 2 CLFCDESFSSVDDLLQHMKKKHGFDIP 28 (100)
T ss_dssp ---------------------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999976543
No 164
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=45.94 E-value=1.2e+02 Score=38.46 Aligned_cols=93 Identities=22% Similarity=0.161 Sum_probs=76.2
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHHH
Q 000686 23 RAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTIIA 102 (1351)
Q Consensus 23 ~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~a 102 (1351)
...-++++.|++..|++.--+.+.+-|..++++.=+|..+.++..- -.||.++..+.+|.|+-+.--
T Consensus 363 ~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~-------------~~aL~Da~~~ieL~p~~~kgy 429 (539)
T KOG0548|consen 363 EKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEY-------------PEALKDAKKCIELDPNFIKAY 429 (539)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhH-------------HHHHHHHHHHHhcCchHHHHH
Confidence 3456789999999999999999999999999999999888888643 348888999999988877544
Q ss_pred HHHHHHHHHhhhcchHHHHHHHHHHHHhCC
Q 000686 103 YFCACALYDLASFNREYYKVIRECNRALGI 132 (1351)
Q Consensus 103 ~f~A~lL~~La~~~~~Y~~av~ec~RaL~i 132 (1351)
.--|..|+-+- .|.+|+.-+..||-.
T Consensus 430 ~RKg~al~~mk----~ydkAleay~eale~ 455 (539)
T KOG0548|consen 430 LRKGAALRAMK----EYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhc
Confidence 44466677666 799999999999955
No 165
>PHA00733 hypothetical protein
Probab=45.31 E-value=14 Score=38.24 Aligned_cols=25 Identities=24% Similarity=0.625 Sum_probs=22.4
Q ss_pred eecCccccccCChHHHHHhHHhhcc
Q 000686 292 WECCDCSEKYGDWQSYMQHLCDFHD 316 (1351)
Q Consensus 292 W~C~~Cs~kF~d~~~~~~Hl~~eH~ 316 (1351)
..|+.|++.|.....|..|++.+|-
T Consensus 100 ~~C~~CgK~F~~~~sL~~H~~~~h~ 124 (128)
T PHA00733 100 KVCPVCGKEFRNTDSTLDHVCKKHN 124 (128)
T ss_pred ccCCCCCCccCCHHHHHHHHHHhcC
Confidence 3899999999999999999999884
No 166
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=43.11 E-value=34 Score=28.34 Aligned_cols=38 Identities=18% Similarity=-0.075 Sum_probs=32.7
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHH
Q 000686 23 RAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAF 60 (1351)
Q Consensus 23 ~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~ 60 (1351)
.-|....+.|++.+|.+..++..+.+|+.+.+++.-|.
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 44667889999999999999999999999988876553
No 167
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=43.05 E-value=2e+02 Score=36.68 Aligned_cols=76 Identities=14% Similarity=0.049 Sum_probs=42.2
Q ss_pred hhHhhHHHHHHHHhhcCCCCCcch-----------------hhHHHHHHHHHHHHhhh--ccCchHHHHHHHHHHHHhhh
Q 000686 54 YQHAKAFILYKIALQNNDHDGGTV-----------------RNYIEEAAMSALQASFL--LSSSTIIAYFCACALYDLAS 114 (1351)
Q Consensus 54 ~h~~qg~i~~~~A~~~d~~~~~~K-----------------~~~L~~al~~~~~Aa~l--~p~sl~~a~f~A~lL~~La~ 114 (1351)
-++.+|.-+++.|-.+|+.+...- ..-+..+.+.+.+|..+ .|.... .+.|..+..+.
T Consensus 356 ~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~--~~~ala~~~~~- 432 (517)
T PRK10153 356 KSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPR--IYEILAVQALV- 432 (517)
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChH--HHHHHHHHHHh-
Confidence 344566667788877776522000 11123334444444443 444432 23444444443
Q ss_pred cchHHHHHHHHHHHHhCCC
Q 000686 115 FNREYYKVIRECNRALGIE 133 (1351)
Q Consensus 115 ~~~~Y~~av~ec~RaL~i~ 133 (1351)
.+.|++|+.+.+||+...
T Consensus 433 -~g~~~~A~~~l~rAl~L~ 450 (517)
T PRK10153 433 -KGKTDEAYQAINKAIDLE 450 (517)
T ss_pred -cCCHHHHHHHHHHHHHcC
Confidence 247999999999999885
No 168
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=41.85 E-value=15 Score=40.27 Aligned_cols=32 Identities=9% Similarity=0.173 Sum_probs=24.3
Q ss_pred CCeEEEEEEecCCCCCEEEeeCCeeeEcCc-hhhhh
Q 000686 1274 RQHSVCFLYDDQHDEHYVQHSDSNVEAYSE-VNILA 1308 (1351)
Q Consensus 1274 GGHY~AyvR~~~~~g~Wy~FDDs~Vt~Vss-We~Vl 1308 (1351)
.||-+.++. ..+.||.+||..+-.-++ |.+|+
T Consensus 138 ~~Havfa~~---ts~gWy~iDDe~~y~~tPdp~~VL 170 (193)
T PF05408_consen 138 QEHAVFACV---TSDGWYAIDDEDFYPWTPDPSDVL 170 (193)
T ss_dssp TTEEEEEEE---ETTCEEEEETTEEEE----GGGEE
T ss_pred CcceEEEEE---eeCcEEEecCCeeeeCCCChhheE
Confidence 589998888 588999999999877664 77665
No 169
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=41.63 E-value=1.2e+02 Score=39.14 Aligned_cols=132 Identities=18% Similarity=0.156 Sum_probs=99.2
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCch
Q 000686 20 AEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSST 99 (1351)
Q Consensus 20 ~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl 99 (1351)
+--.++++..+-+.+-+.||.++.+.++||.-+--....|-....+.+..+ |.+..+.+..-.|.|-
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~e-------------a~~~vr~glr~d~~S~ 75 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEE-------------AYELVRLGLRNDLKSH 75 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHH-------------HHHHHHHHhccCcccc
Confidence 345789999999999999999999999999887777888888888877644 7788888887666664
Q ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCCCCCCCCCcCccccCCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 000686 100 IIAYFCACALYDLASFNREYYKVIRECNRALGIENPMEPERSSFVFKDPSQEWGIEKTKQELRELMKKSERKKRWAAISS 179 (1351)
Q Consensus 100 ~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i~~P~DP~~~~l~~~~~~~~~ri~~~k~eL~~Li~ka~~ki~~~~~r~ 179 (1351)
+ |=+.|=.+-+..+.|++|++=-..||.++ |...+| -...+-+|.++|.+-..+..+-++++.|-
T Consensus 76 v----CwHv~gl~~R~dK~Y~eaiKcy~nAl~~~----~dN~qi-------lrDlslLQ~QmRd~~~~~~tr~~LLql~~ 140 (700)
T KOG1156|consen 76 V----CWHVLGLLQRSDKKYDEAIKCYRNALKIE----KDNLQI-------LRDLSLLQIQMRDYEGYLETRNQLLQLRP 140 (700)
T ss_pred h----hHHHHHHHHhhhhhHHHHHHHHHHHHhcC----CCcHHH-------HHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 4 44444444444558999999999999884 333221 23477888999988888887666666433
No 170
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=41.33 E-value=20 Score=28.06 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=19.5
Q ss_pred ecCccccccCChHHHHHhHHhh
Q 000686 293 ECCDCSEKYGDWQSYMQHLCDF 314 (1351)
Q Consensus 293 ~C~~Cs~kF~d~~~~~~Hl~~e 314 (1351)
.|..|.+.|.+..++..|+..+
T Consensus 5 ~C~~C~~~~~~~~~~~~H~~gk 26 (35)
T smart00451 5 YCKLCNVTFTDEISVEAHLKGK 26 (35)
T ss_pred EccccCCccCCHHHHHHHHChH
Confidence 4999999999999999998654
No 171
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=40.76 E-value=90 Score=26.67 Aligned_cols=47 Identities=26% Similarity=0.274 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhhccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCC
Q 000686 82 EEAAMSALQASFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGI 132 (1351)
Q Consensus 82 ~~al~~~~~Aa~l~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i 132 (1351)
..|+..+.++....|....+....|..++..+ .|++++.-+.+++.+
T Consensus 17 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~a~~~~~~~~~~ 63 (100)
T cd00189 17 DEALEYYEKALELDPDNADAYYNLAAAYYKLG----KYEEALEDYEKALEL 63 (100)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhC
Confidence 45889999999999999877777888888777 899999999999876
No 172
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=40.45 E-value=2.1e+02 Score=35.34 Aligned_cols=121 Identities=22% Similarity=0.149 Sum_probs=80.0
Q ss_pred HHhhcCChHHHHHHHHHHHHhcCCcchh--hHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHHHHH
Q 000686 27 AAYDEGDYVGALKCIKNSESRYRKCPFY--QHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTIIAYF 104 (1351)
Q Consensus 27 ~~~~rg~~~~Alk~~k~la~~~~~s~~~--h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~a~f 104 (1351)
..+++|++..|..+=+..++--+++..+ +.-+-.--++++--++-+..-.|...-+.|+++..++..+-|+.+.=-.=
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyR 296 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYR 296 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHH
Confidence 5678888888888766655444322211 22111111111222221111456666678999999999999999987777
Q ss_pred HHHHHHHhhhcchHHHHHHHHHHHHhCCCCCCCCCcCccccCCCCchhhHHHHHHHHHHHHHHHH
Q 000686 105 CACALYDLASFNREYYKVIRECNRALGIENPMEPERSSFVFKDPSQEWGIEKTKQELRELMKKSE 169 (1351)
Q Consensus 105 ~A~lL~~La~~~~~Y~~av~ec~RaL~i~~P~DP~~~~l~~~~~~~~~ri~~~k~eL~~Li~ka~ 169 (1351)
+++++..++ +|+.|..--++|+.++ |... .++.||..|.+++.
T Consensus 297 rG~A~l~~~----e~~~A~~df~ka~k~~----P~Nk--------------a~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 297 RGQALLALG----EYDLARDDFQKALKLE----PSNK--------------AARAELIKLKQKIR 339 (397)
T ss_pred HHHHHHhhc----cHHHHHHHHHHHHHhC----CCcH--------------HHHHHHHHHHHHHH
Confidence 899999999 9999999999999773 4433 36777777777764
No 173
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=40.00 E-value=86 Score=39.63 Aligned_cols=81 Identities=20% Similarity=-0.020 Sum_probs=67.1
Q ss_pred CCCCchHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhh
Q 000686 14 PPFDTTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASF 93 (1351)
Q Consensus 14 ~~~~~~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~ 93 (1351)
-|-|-+..|.||+-.+..|+...||+-++..++-+|.-..++.-+|.++.-+=+= + .|+++|.+|.+
T Consensus 388 ~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~y--d-----------kAleay~eale 454 (539)
T KOG0548|consen 388 DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEY--D-----------KALEAYQEALE 454 (539)
T ss_pred CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH--H-----------HHHHHHHHHHh
Confidence 3678899999999999999999999999999999999888888888877654332 1 28899999999
Q ss_pred hccCchHHHHHHHH
Q 000686 94 LLSSSTIIAYFCAC 107 (1351)
Q Consensus 94 l~p~sl~~a~f~A~ 107 (1351)
+.|++-++.-.+=+
T Consensus 455 ~dp~~~e~~~~~~r 468 (539)
T KOG0548|consen 455 LDPSNAEAIDGYRR 468 (539)
T ss_pred cCchhHHHHHHHHH
Confidence 99988776654443
No 174
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=39.79 E-value=1.2e+02 Score=35.27 Aligned_cols=73 Identities=21% Similarity=0.104 Sum_probs=37.3
Q ss_pred HhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHHHHHHHH
Q 000686 28 AYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTIIAYFCAC 107 (1351)
Q Consensus 28 ~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~a~f~A~ 107 (1351)
..-+|....++..+-.++-.||...-+++.+|.-.+... |. ..|+..+++|+.+.|++-+.-...+-
T Consensus 76 ~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g----~~---------~~A~~~~rkA~~l~p~d~~~~~~lga 142 (257)
T COG5010 76 LYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNG----NF---------GEAVSVLRKAARLAPTDWEAWNLLGA 142 (257)
T ss_pred HHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhc----ch---------HHHHHHHHHHhccCCCChhhhhHHHH
Confidence 334444444444555555555554444444333222221 11 34666666666666666666666666
Q ss_pred HHHHhh
Q 000686 108 ALYDLA 113 (1351)
Q Consensus 108 lL~~La 113 (1351)
.|-.+|
T Consensus 143 aldq~G 148 (257)
T COG5010 143 ALDQLG 148 (257)
T ss_pred HHHHcc
Confidence 666666
No 175
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.44 E-value=3.8e+02 Score=34.12 Aligned_cols=107 Identities=17% Similarity=0.157 Sum_probs=80.8
Q ss_pred hHHHHHHHHHhhcC---ChHHHHHHHHHHHHhcCCc-------------chhhHhhHHHHH------------HHHhhcC
Q 000686 19 TAEGRAAIAAYDEG---DYVGALKCIKNSESRYRKC-------------PFYQHAKAFILY------------KIALQNN 70 (1351)
Q Consensus 19 ~~e~~~al~~~~rg---~~~~Alk~~k~la~~~~~s-------------~~~h~~qg~i~~------------~~A~~~d 70 (1351)
.++-..++.++..| ++.+|-..+.+-+..+..+ +.+|.+.|+.++ .-|-.++
T Consensus 277 Da~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~ 356 (606)
T KOG0547|consen 277 DAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD 356 (606)
T ss_pred hhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC
Confidence 34455666677666 7999999998888777332 677788887654 3344444
Q ss_pred CCCCcchhhHHHHHHH------------HHHHHhhhccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCC
Q 000686 71 DHDGGTVRNYIEEAAM------------SALQASFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGI 132 (1351)
Q Consensus 71 ~~~~~~K~~~L~~al~------------~~~~Aa~l~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i 132 (1351)
.. .. ..|+++|+. -|.+|..+.|+...+-|-+|...|.|. .|+.|+..-..|.++
T Consensus 357 ~~--~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~----q~e~A~aDF~Kai~L 423 (606)
T KOG0547|consen 357 PA--FN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQ----QYEEAIADFQKAISL 423 (606)
T ss_pred cc--cc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHH----HHHHHHHHHHHHhhc
Confidence 33 22 338777764 467899999999999999999999999 999999999999977
No 176
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=38.52 E-value=57 Score=36.04 Aligned_cols=20 Identities=30% Similarity=0.378 Sum_probs=13.4
Q ss_pred CcccccCCCChHHHHHHHHh
Q 000686 1006 GTGLGKEAANNFLYMIIQSL 1025 (1351)
Q Consensus 1006 ~~GL~Nl~GTCYLNSILQ~L 1025 (1351)
.+|+-|.++||++||++|-+
T Consensus 33 ft~~PN~~dnCWlNaL~QL~ 52 (193)
T PF05408_consen 33 FTGLPNNHDNCWLNALLQLF 52 (193)
T ss_dssp EE----SSSTHHHHHHHHHH
T ss_pred EecCCCCCCChHHHHHHHHH
Confidence 45999997799999999964
No 177
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=35.56 E-value=1.5e+02 Score=39.16 Aligned_cols=80 Identities=20% Similarity=-0.002 Sum_probs=70.1
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHHH
Q 000686 23 RAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTIIA 102 (1351)
Q Consensus 23 ~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~a 102 (1351)
.+|.-..+-||..+|..+.-+...-+|.|+.+++..|.+......- ..|.++|.-|..+.|+++.+-
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~-------------~EA~~af~~Al~ldP~hv~s~ 721 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQL-------------EEAKEAFLVALALDPDHVPSM 721 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhh-------------HHHHHHHHHHHhcCCCCcHHH
Confidence 5667778888999999999999999999999999999888766544 338999999999999999999
Q ss_pred HHHHHHHHHhhhc
Q 000686 103 YFCACALYDLASF 115 (1351)
Q Consensus 103 ~f~A~lL~~La~~ 115 (1351)
.-.|.+|.++|+.
T Consensus 722 ~Ala~~lle~G~~ 734 (799)
T KOG4162|consen 722 TALAELLLELGSP 734 (799)
T ss_pred HHHHHHHHHhCCc
Confidence 9999999999943
No 178
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=35.51 E-value=1.8e+02 Score=36.63 Aligned_cols=92 Identities=17% Similarity=-0.016 Sum_probs=70.1
Q ss_pred HhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHHHHHHHH
Q 000686 28 AYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTIIAYFCAC 107 (1351)
Q Consensus 28 ~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~a~f~A~ 107 (1351)
.++.+...+|....++..+..|+++.+....|.++++...-- .|+....+...-.|+....=...|.
T Consensus 350 ~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~-------------eai~~L~~~~~~~p~dp~~w~~LAq 416 (484)
T COG4783 350 LLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ-------------EAIRILNRYLFNDPEDPNGWDLLAQ 416 (484)
T ss_pred HHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH-------------HHHHHHHHHhhcCCCCchHHHHHHH
Confidence 345667999999999999999999999999999988765332 4777777777778888888888888
Q ss_pred HHHHhhhcch-------------HHHHHHHHHHHHhCC
Q 000686 108 ALYDLASFNR-------------EYYKVIRECNRALGI 132 (1351)
Q Consensus 108 lL~~La~~~~-------------~Y~~av~ec~RaL~i 132 (1351)
.+=++|+..+ .|++|+.-..||..-
T Consensus 417 ay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 417 AYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 8877775522 366666666666544
No 179
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=35.12 E-value=1.6e+02 Score=39.39 Aligned_cols=96 Identities=15% Similarity=0.104 Sum_probs=72.9
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCch
Q 000686 20 AEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSST 99 (1351)
Q Consensus 20 ~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl 99 (1351)
+-.+-..|.+.+||.-+|++....+-.+||+++-+-.+.|.+++++.+.-+ |+.|..--..+-+++.
T Consensus 11 rr~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~e-------------a~~~Le~~~~~~~~D~ 77 (932)
T KOG2053|consen 11 RRLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDE-------------ALKLLEALYGLKGTDD 77 (932)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchh-------------HHHHHhhhccCCCCch
Confidence 445678899999999999999999999999999999999999999987744 3444444445555555
Q ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCC
Q 000686 100 IIAYFCACALYDLASFNREYYKVIRECNRALGI 132 (1351)
Q Consensus 100 ~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i 132 (1351)
..--|.-.-+-+++ .|++|+.--+||...
T Consensus 78 ~tLq~l~~~y~d~~----~~d~~~~~Ye~~~~~ 106 (932)
T KOG2053|consen 78 LTLQFLQNVYRDLG----KLDEAVHLYERANQK 106 (932)
T ss_pred HHHHHHHHHHHHHh----hhhHHHHHHHHHHhh
Confidence 55555555556666 678888877777743
No 180
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=32.67 E-value=2.6e+02 Score=38.00 Aligned_cols=109 Identities=23% Similarity=0.198 Sum_probs=78.0
Q ss_pred CCchHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCc-chhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhh
Q 000686 16 FDTTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKC-PFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFL 94 (1351)
Q Consensus 16 ~~~~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s-~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l 94 (1351)
.-|.+=.-+|.=++.|||+..||+.-+.+.--.|.+ |=+-.--||-|.++.... .|+-++.||..|
T Consensus 162 ~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~-------------~a~~a~~ralqL 228 (1018)
T KOG2002|consen 162 DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSE-------------KALLAFERALQL 228 (1018)
T ss_pred cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchh-------------hHHHHHHHHHhc
Confidence 344444556777899999999999999988778765 445556678887766543 388899999999
Q ss_pred ccCchHHHHHHHHHHHHhhhcch-HHHHHHHHHHHHhCCCCCCCCCc
Q 000686 95 LSSSTIIAYFCACALYDLASFNR-EYYKVIRECNRALGIENPMEPER 140 (1351)
Q Consensus 95 ~p~sl~~a~f~A~lL~~La~~~~-~Y~~av~ec~RaL~i~~P~DP~~ 140 (1351)
.|.++.. ..|-..+.|..... .|++++.--.||..+ +|.+|-.
T Consensus 229 dp~~v~a--lv~L~~~~l~~~d~~s~~~~~~ll~~ay~~-n~~nP~~ 272 (1018)
T KOG2002|consen 229 DPTCVSA--LVALGEVDLNFNDSDSYKKGVQLLQRAYKE-NNENPVA 272 (1018)
T ss_pred ChhhHHH--HHHHHHHHHHccchHHHHHHHHHHHHHHhh-cCCCcHH
Confidence 9966544 44445555554433 699999999999876 4666653
No 181
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=32.37 E-value=47 Score=39.88 Aligned_cols=54 Identities=15% Similarity=0.106 Sum_probs=45.5
Q ss_pred cchhhHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCC
Q 000686 75 GTVRNYIEEAAMSALQASFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGI 132 (1351)
Q Consensus 75 ~~K~~~L~~al~~~~~Aa~l~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i 132 (1351)
--|+--...|++||++++.+.|-..++..-+|.++|.+- .|--|...|..|+.+
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K----~FA~AE~DC~~AiaL 160 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQK----SFAQAEEDCEAAIAL 160 (536)
T ss_pred hhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHH----HHHHHHHhHHHHHHh
Confidence 344445567999999999999999999999999999887 677888889988865
No 182
>PF12907 zf-met2: Zinc-binding
Probab=32.11 E-value=20 Score=30.29 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=21.7
Q ss_pred ecCcccccc---CChHHHHHhHHhhcccc
Q 000686 293 ECCDCSEKY---GDWQSYMQHLCDFHDLR 318 (1351)
Q Consensus 293 ~C~~Cs~kF---~d~~~~~~Hl~~eH~~~ 318 (1351)
+|.+|-+.| ++...|..|.+++|+..
T Consensus 3 ~C~iC~qtF~~t~~~~~L~eH~enKHpK~ 31 (40)
T PF12907_consen 3 ICKICRQTFMQTTNEPQLKEHAENKHPKN 31 (40)
T ss_pred CcHHhhHHHHhcCCHHHHHHHHHccCCCC
Confidence 699999777 55577999999999863
No 183
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=31.72 E-value=26 Score=30.82 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=18.9
Q ss_pred eecCccccccCChHHHHHhHHhhc
Q 000686 292 WECCDCSEKYGDWQSYMQHLCDFH 315 (1351)
Q Consensus 292 W~C~~Cs~kF~d~~~~~~Hl~~eH 315 (1351)
-+||.|+.++++ .+..||...|
T Consensus 32 v~CPiC~~~~~~--~l~~Hl~~~H 53 (54)
T PF05605_consen 32 VVCPICSSRVTD--NLIRHLNSQH 53 (54)
T ss_pred ccCCCchhhhhh--HHHHHHHHhc
Confidence 489999998775 8999998877
No 184
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=31.63 E-value=2.5e+02 Score=33.31 Aligned_cols=69 Identities=13% Similarity=-0.036 Sum_probs=58.1
Q ss_pred ChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHh
Q 000686 33 DYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTIIAYFCACALYDL 112 (1351)
Q Consensus 33 ~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~a~f~A~lL~~L 112 (1351)
++......++.-...+|+.+-=..+-|.+++.+.+..+ |+.+|++|..|.|+...+...+|..|+.-
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~-------------A~~AY~~A~rL~g~n~~~~~g~aeaL~~~ 203 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASD-------------ALLAYRNALRLAGDNPEILLGLAEALYYQ 203 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhH-------------HHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 35556666777777789988888888888888876644 99999999999999999999999999988
Q ss_pred hh
Q 000686 113 AS 114 (1351)
Q Consensus 113 a~ 114 (1351)
+.
T Consensus 204 a~ 205 (287)
T COG4235 204 AG 205 (287)
T ss_pred cC
Confidence 73
No 185
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=30.92 E-value=3e+02 Score=34.05 Aligned_cols=87 Identities=15% Similarity=0.102 Sum_probs=63.7
Q ss_pred HHHhhc-CChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHHHHH
Q 000686 26 IAAYDE-GDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTIIAYF 104 (1351)
Q Consensus 26 l~~~~r-g~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~a~f 104 (1351)
+.+++. +....|+.+.++|.+++|....+ .+++....++. ..|+..+.+|....|++..+-..
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~pev~~~-------LA~v~l~~~~E---------~~AI~ll~~aL~~~p~d~~LL~~ 239 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERDPEVAVL-------LARVYLLMNEE---------VEAIRLLNEALKENPQDSELLNL 239 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcCCcHHHH-------HHHHHHhcCcH---------HHHHHHHHHHHHhCCCCHHHHHH
Confidence 344443 35889999999999999863221 22222223332 35788899999999999888888
Q ss_pred HHHHHHHhhhcchHHHHHHHHHHHHhCC
Q 000686 105 CACALYDLASFNREYYKVIRECNRALGI 132 (1351)
Q Consensus 105 ~A~lL~~La~~~~~Y~~av~ec~RaL~i 132 (1351)
-|..|+.-+ .|+.|+.-|++|..+
T Consensus 240 Qa~fLl~k~----~~~lAL~iAk~av~l 263 (395)
T PF09295_consen 240 QAEFLLSKK----KYELALEIAKKAVEL 263 (395)
T ss_pred HHHHHHhcC----CHHHHHHHHHHHHHh
Confidence 888887766 899999999999977
No 186
>PHA00732 hypothetical protein
Probab=30.75 E-value=34 Score=32.83 Aligned_cols=24 Identities=21% Similarity=0.183 Sum_probs=21.4
Q ss_pred ecCccccccCChHHHHHhHHhhcc
Q 000686 293 ECCDCSEKYGDWQSYMQHLCDFHD 316 (1351)
Q Consensus 293 ~C~~Cs~kF~d~~~~~~Hl~~eH~ 316 (1351)
.|..|++.|.+...+..|+...|.
T Consensus 3 ~C~~Cgk~F~s~s~Lk~H~r~~H~ 26 (79)
T PHA00732 3 KCPICGFTTVTLFALKQHARRNHT 26 (79)
T ss_pred cCCCCCCccCCHHHHHHHhhcccC
Confidence 599999999999999999976665
No 187
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.25 E-value=2.5e+02 Score=35.65 Aligned_cols=111 Identities=16% Similarity=0.144 Sum_probs=67.0
Q ss_pred CCCchHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHH------------HhhcCCCCCcchhhH--
Q 000686 15 PFDTTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKI------------ALQNNDHDGGTVRNY-- 80 (1351)
Q Consensus 15 ~~~~~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~------------A~~~d~~~~~~K~~~-- 80 (1351)
|..+.-...+|+...++.+..+--+--.+...=.|.-|-++|-+|.|.+=+ |..+++ .--.+|
T Consensus 357 ~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p---e~~~~~iQ 433 (606)
T KOG0547|consen 357 PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP---ENAYAYIQ 433 (606)
T ss_pred cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh---hhhHHHHH
Confidence 344444777788888877766655555555555565555555566665422 122222 112222
Q ss_pred ----------HHHHHHHHHHHhhhccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCC
Q 000686 81 ----------IEEAAMSALQASFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGI 132 (1351)
Q Consensus 81 ----------L~~al~~~~~Aa~l~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i 132 (1351)
+..+.--|..|...||++.+.-.|+|..|-.=. .+++|+.--..|.-.
T Consensus 434 l~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqq----qFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 434 LCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQ----QFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHH----hHHHHHHHHHHHHhh
Confidence 233555678889999999999999999998766 444444444444433
No 188
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=30.14 E-value=1.5e+02 Score=37.84 Aligned_cols=90 Identities=22% Similarity=0.034 Sum_probs=78.6
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCch
Q 000686 20 AEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSST 99 (1351)
Q Consensus 20 ~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl 99 (1351)
.-.--|.-....|++.+|+..+...+..-|.++-+|.+.|.|+-....- ..|++.+..|..|.+.+=
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~-------------~~Aa~~~~~Ar~LD~~DR 262 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDL-------------KEAAEAMDEARELDLADR 262 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH-------------HHHHHHHHHHHhCChhhH
Confidence 3344566777899999999999999999999999999999998776533 569999999999999999
Q ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHH
Q 000686 100 IIAYFCACALYDLASFNREYYKVIREC 126 (1351)
Q Consensus 100 ~~a~f~A~lL~~La~~~~~Y~~av~ec 126 (1351)
-|..=+|+-++-.+ .+++|+.-|
T Consensus 263 yiNsK~aKy~LRa~----~~e~A~~~~ 285 (517)
T PF12569_consen 263 YINSKCAKYLLRAG----RIEEAEKTA 285 (517)
T ss_pred HHHHHHHHHHHHCC----CHHHHHHHH
Confidence 99999999999988 888888777
No 189
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=29.97 E-value=37 Score=36.99 Aligned_cols=29 Identities=14% Similarity=0.393 Sum_probs=23.6
Q ss_pred chhhHHHHHHHHHhcCceeEeecCccccccCC
Q 000686 272 EKDLLSEAIEFAKAHRSWKFWECCDCSEKYGD 303 (1351)
Q Consensus 272 ~~~~Lseal~fak~n~sW~FW~C~~Cs~kF~d 303 (1351)
+..-+..+|+..+++. .|+||.||=.+.+
T Consensus 118 H~~~~~~~Le~~~~~~---~~vC~vCGy~~~g 146 (166)
T COG1592 118 HAEMFRGLLERLEEGK---VWVCPVCGYTHEG 146 (166)
T ss_pred HHHHHHHHHHhhhcCC---EEEcCCCCCcccC
Confidence 4889999999999777 9999999765543
No 190
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=29.81 E-value=2e+02 Score=36.15 Aligned_cols=57 Identities=11% Similarity=-0.106 Sum_probs=48.6
Q ss_pred hcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCch
Q 000686 30 DEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSST 99 (1351)
Q Consensus 30 ~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl 99 (1351)
-|+.|.+|++--+....=.|+..-||.+=||=++++- |+ .+|++++++|+...|.+-
T Consensus 342 lr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmK----Nt---------~AAi~sYRrAvdi~p~Dy 398 (559)
T KOG1155|consen 342 LRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMK----NT---------HAAIESYRRAVDINPRDY 398 (559)
T ss_pred HHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhc----cc---------HHHHHHHHHHHhcCchhH
Confidence 4667888888888888888999999999999998853 44 569999999999999986
No 191
>PF14353 CpXC: CpXC protein
Probab=27.89 E-value=40 Score=34.54 Aligned_cols=14 Identities=21% Similarity=0.634 Sum_probs=10.9
Q ss_pred eeeccCCCCccccc
Q 000686 1147 SIECINCHMRSGYQ 1160 (1351)
Q Consensus 1147 ~I~C~~Cg~~S~~~ 1160 (1351)
+++|++||+.....
T Consensus 1 ~itCP~C~~~~~~~ 14 (128)
T PF14353_consen 1 EITCPHCGHEFEFE 14 (128)
T ss_pred CcCCCCCCCeeEEE
Confidence 47999999986643
No 192
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=26.87 E-value=30 Score=36.52 Aligned_cols=12 Identities=42% Similarity=1.389 Sum_probs=11.0
Q ss_pred eEeecCcccccc
Q 000686 290 KFWECCDCSEKY 301 (1351)
Q Consensus 290 ~FW~C~~Cs~kF 301 (1351)
.||.||.|++.|
T Consensus 123 ~f~~C~~C~kiy 134 (147)
T PF01927_consen 123 EFWRCPGCGKIY 134 (147)
T ss_pred eEEECCCCCCEe
Confidence 499999999988
No 193
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=26.09 E-value=79 Score=28.66 Aligned_cols=48 Identities=19% Similarity=-0.002 Sum_probs=25.6
Q ss_pred HHHHHHHHhhhccCchH-HHHHHHHHHHHhhhc---chHHHHHHHHHHHHhCC
Q 000686 84 AAMSALQASFLLSSSTI-IAYFCACALYDLASF---NREYYKVIRECNRALGI 132 (1351)
Q Consensus 84 al~~~~~Aa~l~p~sl~-~a~f~A~lL~~La~~---~~~Y~~av~ec~RaL~i 132 (1351)
|++.+.+|..+. ..+. -....|.+++.+|.- .+.|++|+.-..+|+.|
T Consensus 24 A~~~~~~al~~~-~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 24 ALDYYEKALDIE-EQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHH-HHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 555555555441 1111 122335555555543 22688888888888755
No 194
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=25.52 E-value=1.5e+02 Score=26.43 Aligned_cols=28 Identities=43% Similarity=0.681 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhhcchHHHHHHHHHHHHhCCC
Q 000686 102 AYFCACALYDLASFNREYYKVIRECNRALGIE 133 (1351)
Q Consensus 102 a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i~ 133 (1351)
-++.|...|-|+ .|.+|.+-|.+.|.++
T Consensus 4 lY~lAig~ykl~----~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 4 LYYLAIGHYKLG----EYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHTT-----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh----hHHHHHHHHHHHHhhC
Confidence 467788889999 9999999999999884
No 195
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=25.42 E-value=1.8e+02 Score=25.99 Aligned_cols=44 Identities=25% Similarity=0.139 Sum_probs=37.8
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHh
Q 000686 24 AAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIAL 67 (1351)
Q Consensus 24 ~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~ 67 (1351)
-|++..+.|++.+|++.++.+..-.|+...+..++..|.-+.++
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k 50 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK 50 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence 47889999999999999999999999999999999888877765
No 196
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.31 E-value=3.1e+02 Score=32.91 Aligned_cols=82 Identities=16% Similarity=0.146 Sum_probs=67.3
Q ss_pred HhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHHHHHHHH
Q 000686 28 AYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTIIAYFCAC 107 (1351)
Q Consensus 28 ~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~a~f~A~ 107 (1351)
.++...+.+|.+++.-.-+|.|.+--..-+-||.+|..-.= -+|.+|+.+--.++|.--.+-.++|.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f-------------~~AA~CYeQL~ql~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEF-------------ALAAECYEQLGQLHPELEQYRLYQAQ 86 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 34555688899999888888887777777888888765433 24889999999999999999999999
Q ss_pred HHHHhhhcchHHHHHHHHH
Q 000686 108 ALYDLASFNREYYKVIREC 126 (1351)
Q Consensus 108 lL~~La~~~~~Y~~av~ec 126 (1351)
+||.++ -|-+|++..
T Consensus 87 SLY~A~----i~ADALrV~ 101 (459)
T KOG4340|consen 87 SLYKAC----IYADALRVA 101 (459)
T ss_pred HHHHhc----ccHHHHHHH
Confidence 999999 777777765
No 197
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=24.96 E-value=19 Score=43.15 Aligned_cols=51 Identities=29% Similarity=0.561 Sum_probs=36.6
Q ss_pred hHHhhhhccCCHHHHcceeEEehHHHHHHHhcc--cc------hhhHH-------HHHHHHHhcCceeEeecC
Q 000686 238 VAKSFWNNELSAEQKRSLFRVKIEDLKKHLTNR--KE------KDLLS-------EAIEFAKAHRSWKFWECC 295 (1351)
Q Consensus 238 ~~r~yW~~~ls~e~kr~FL~V~i~~L~~y~~~~--~~------~~~Ls-------eal~fak~n~sW~FW~C~ 295 (1351)
-+.+||. +|..|.....++-.|....+-|-+. .| ..+|+ +|-.||| ||+|.
T Consensus 81 ~~~sFw~-tm~eEde~~~~t~kvn~tlsECl~Li~eGcp~eei~~~L~~li~~IP~A~K~aK------YWIC~ 146 (353)
T PF15297_consen 81 PVGSFWT-TMAEEDEQRLFTEKVNKTLSECLNLIEEGCPKEEILATLSDLIKNIPDAKKLAK------YWICL 146 (353)
T ss_pred Ccccccc-chhhhhhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCchHHHHHH------HHHHH
Confidence 4789999 9988876666666666555555444 33 56788 7777776 99995
No 198
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=24.76 E-value=4.4e+02 Score=32.16 Aligned_cols=68 Identities=24% Similarity=0.263 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhhhccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCCCCCCCCCcCccccCCCCchhhHHHHHHHH
Q 000686 82 EEAAMSALQASFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGIENPMEPERSSFVFKDPSQEWGIEKTKQEL 161 (1351)
Q Consensus 82 ~~al~~~~~Aa~l~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i~~P~DP~~~~l~~~~~~~~~ri~~~k~eL 161 (1351)
|.|+...++|..+-|..+.--.=-|+.+|+|- -+..|+.=|..+|-|. -.++.--+|
T Consensus 136 Rs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe----~~~~a~nw~ee~~~~d-------------------~e~K~~~~l 192 (390)
T KOG0551|consen 136 RSALNDCSAALKLKPTHLKAYIRGAKCLLELE----RFAEAVNWCEEGLQID-------------------DEAKKAIEL 192 (390)
T ss_pred HHHHHHHHHHHhcCcchhhhhhhhhHHHHHHH----HHHHHHHHHhhhhhhh-------------------HHHHHHHHH
Confidence 45788888888888888876666788888887 7888999998887662 244555678
Q ss_pred HHHHHHHHHHh
Q 000686 162 RELMKKSERKK 172 (1351)
Q Consensus 162 ~~Li~ka~~ki 172 (1351)
++||.+....+
T Consensus 193 ~~l~~k~~~~~ 203 (390)
T KOG0551|consen 193 RNLIHKNDKLK 203 (390)
T ss_pred HhhcCcchHHH
Confidence 88888776433
No 199
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=23.56 E-value=3.9e+02 Score=30.92 Aligned_cols=137 Identities=15% Similarity=0.089 Sum_probs=83.2
Q ss_pred HhhcCChHHHHHHHHHHHHhc-CCcchhhHhhHHHHHHHHhhcCCCC-C-cchhhHHHHHHHHHHHHhhhccCchHHHHH
Q 000686 28 AYDEGDYVGALKCIKNSESRY-RKCPFYQHAKAFILYKIALQNNDHD-G-GTVRNYIEEAAMSALQASFLLSSSTIIAYF 104 (1351)
Q Consensus 28 ~~~rg~~~~Alk~~k~la~~~-~~s~~~h~~qg~i~~~~A~~~d~~~-~-~~K~~~L~~al~~~~~Aa~l~p~sl~~a~f 104 (1351)
+|+.|+..-|..+..+.-... .-+|-....-+.++|.++..+-... . ..=..+|.+|.+.+......-..+..+...
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 678899888877776665555 4566666777889999877665431 0 344667999999987755555566656555
Q ss_pred HHHHHHHhhhc---chHHHHHHHHHHHHhCC---CCCCCCCcCccc---cCCCCchhhHHHHHHHHHHHHHHH
Q 000686 105 CACALYDLASF---NREYYKVIRECNRALGI---ENPMEPERSSFV---FKDPSQEWGIEKTKQELRELMKKS 168 (1351)
Q Consensus 105 ~A~lL~~La~~---~~~Y~~av~ec~RaL~i---~~P~DP~~~~l~---~~~~~~~~ri~~~k~eL~~Li~ka 168 (1351)
+++.|..|++- .+.| +.+.+|.+++.. +-|.-|...-+. ..+ ..+......+|+++|...
T Consensus 83 r~~iL~~La~~~l~~~~~-~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~---~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTY-ESVEKALNALRLLESEYGNKPEVFLLKLEILLK---SFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhc---cCChhHHHHHHHHHHHhc
Confidence 55555555532 1133 344557777665 344434333222 222 444556667777777664
No 200
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=23.54 E-value=31 Score=35.04 Aligned_cols=14 Identities=29% Similarity=0.669 Sum_probs=12.6
Q ss_pred eecCccccccCChH
Q 000686 292 WECCDCSEKYGDWQ 305 (1351)
Q Consensus 292 W~C~~Cs~kF~d~~ 305 (1351)
++||.||.||.|..
T Consensus 10 R~Cp~CG~kFYDLn 23 (108)
T PF09538_consen 10 RTCPSCGAKFYDLN 23 (108)
T ss_pred ccCCCCcchhccCC
Confidence 58999999999987
No 201
>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 2", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=23.44 E-value=7.2 Score=44.64 Aligned_cols=74 Identities=16% Similarity=0.252 Sum_probs=52.5
Q ss_pred CcceeeccCCcchHHHHHHHHHhhcccccc----CCCCC-ccccccccCCccccccceeecCCcceEEEeccc----cCC
Q 000686 471 TLKLVCFLESSQLNSIIHKLQHVAGTLSEN----TGIGN-STDEQLTGAKTFDIKEDVALNDNSSYLILDGVL----SYD 541 (1351)
Q Consensus 471 tp~~IcFLe~~~L~~il~fL~~l~~~l~~~----~~~~~-~~~~~~~~~~~~~vke~I~l~~~~s~LlLD~rl----~~~ 541 (1351)
--||+|+++...|-|.+.+|.+-...|..- .+... ..+.+-.+|.+. +|.-+|++|+=+ ...
T Consensus 56 ~~q~ll~~GSkS~SH~~~~lery~~~Lk~l~~~~~~~q~~il~~v~~~W~~~---------~q~~~li~dkll~~~ii~~ 126 (253)
T PF09090_consen 56 FVQCLLHIGSKSFSHVLSALERYKEVLKELEAESEEAQFWILDAVFRFWKNN---------PQMGFLIIDKLLNYGIISP 126 (253)
T ss_dssp HHHHHHHHTTTSHHHHHHHHHHTHHHHHHH-TSSHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHTTSS-H
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhcC---------CceehHHHHHHHhcCCCCH
Confidence 358999999999999999888877763322 11111 445566677777 888889999877 666
Q ss_pred CceeEeeccccc
Q 000686 542 THIVSWLYLGHE 553 (1351)
Q Consensus 542 D~~~sWL~~~~s 553 (1351)
-+++.|+|+...
T Consensus 127 ~~Vv~w~f~~~~ 138 (253)
T PF09090_consen 127 SAVVNWVFSPEN 138 (253)
T ss_dssp HHHHHHHTSGGG
T ss_pred HHHHHHHcCccc
Confidence 779999997433
No 202
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=23.04 E-value=3.5e+02 Score=32.84 Aligned_cols=86 Identities=9% Similarity=0.004 Sum_probs=63.6
Q ss_pred ChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHh
Q 000686 33 DYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTIIAYFCACALYDL 112 (1351)
Q Consensus 33 ~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~a~f~A~lL~~L 112 (1351)
...||+..|.++++--+.--.+...|=|.-+.+....++. +.+|++-+.+|..-.|+++.-.....++....
T Consensus 156 eW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~--------~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~ 227 (389)
T COG2956 156 EWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD--------VDRARELLKKALQADKKCVRASIILGRVELAK 227 (389)
T ss_pred HHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh--------HHHHHHHHHHHHhhCccceehhhhhhHHHHhc
Confidence 4678888888888877766656555544433333333332 24488889999999999999999888888877
Q ss_pred hhcchHHHHHHHHHHHHh
Q 000686 113 ASFNREYYKVIRECNRAL 130 (1351)
Q Consensus 113 a~~~~~Y~~av~ec~RaL 130 (1351)
| .|++||..-++.+
T Consensus 228 g----~y~~AV~~~e~v~ 241 (389)
T COG2956 228 G----DYQKAVEALERVL 241 (389)
T ss_pred c----chHHHHHHHHHHH
Confidence 7 8999998887777
No 203
>PRK14574 hmsH outer membrane protein; Provisional
Probab=22.97 E-value=5.4e+02 Score=34.93 Aligned_cols=104 Identities=14% Similarity=0.003 Sum_probs=82.5
Q ss_pred chHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccC
Q 000686 18 TTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSS 97 (1351)
Q Consensus 18 ~~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~ 97 (1351)
.+.....|....-+|+..+|.+++.++...-|+.+-+...+|.|.. ....| ++|...+++|..+.|+
T Consensus 416 ~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~----~Rg~p---------~~A~~~~k~a~~l~P~ 482 (822)
T PRK14574 416 IEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYL----ARDLP---------RKAEQELKAVESLAPR 482 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH----hcCCH---------HHHHHHHHHHhhhCCc
Confidence 3566677888899999999999999999999998888886666543 33355 7899999999999999
Q ss_pred chHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCCCCCCCCC
Q 000686 98 STIIAYFCACALYDLASFNREYYKVIRECNRALGIENPMEPE 139 (1351)
Q Consensus 98 sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i~~P~DP~ 139 (1351)
+...=.-.|.....|+ .|+.|..... .|--..|.||.
T Consensus 483 ~~~~~~~~~~~al~l~----e~~~A~~~~~-~l~~~~Pe~~~ 519 (822)
T PRK14574 483 SLILERAQAETAMALQ----EWHQMELLTD-DVISRSPEDIP 519 (822)
T ss_pred cHHHHHHHHHHHHhhh----hHHHHHHHHH-HHHhhCCCchh
Confidence 9988888888888887 8888866553 33344677775
No 204
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=22.91 E-value=2.6e+02 Score=35.15 Aligned_cols=81 Identities=12% Similarity=0.038 Sum_probs=56.2
Q ss_pred hcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHHHHHHHHHH
Q 000686 30 DEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTIIAYFCACAL 109 (1351)
Q Consensus 30 ~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~a~f~A~lL 109 (1351)
..++...|.++......+||+|++..+.+|.+....... ..|++.+.+|.... -..--+.+..+
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~-------------~~Ai~~~~~a~~~q---~~~~Ql~~l~~ 308 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNL-------------EEAIESFERAIESQ---SEWKQLHHLCY 308 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCH-------------HHHHHHHHHhccch---hhHHhHHHHHH
Confidence 345678899999999999999999999999987765533 45888888777322 22334555557
Q ss_pred HHhhhcc---hHHHHHHHHH
Q 000686 110 YDLASFN---REYYKVIREC 126 (1351)
Q Consensus 110 ~~La~~~---~~Y~~av~ec 126 (1351)
|++|=-. ..|++|..-.
T Consensus 309 ~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 309 FELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHHchHHHHHHHH
Confidence 7776331 1477775443
No 205
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=22.80 E-value=2.8e+02 Score=34.57 Aligned_cols=97 Identities=18% Similarity=0.162 Sum_probs=74.8
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCchHHHH
Q 000686 24 AAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTIIAY 103 (1351)
Q Consensus 24 ~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~a~ 103 (1351)
++=++++.|++.+|-..-.+.+.--|.+ --.-+..++..|.+ ..+...|+.|+..-.+|+.+.|.-+.--+
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~n---~~~naklY~nra~v------~~rLgrl~eaisdc~~Al~iD~syikall 325 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPSN---KKTNAKLYGNRALV------NIRLGRLREAISDCNEALKIDSSYIKALL 325 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCccc---cchhHHHHHHhHhh------hcccCCchhhhhhhhhhhhcCHHHHHHHH
Confidence 4456778888888888877777666653 11122345555555 55667788899999999999999999999
Q ss_pred HHHHHHHHhhhcchHHHHHHHHHHHHhCCC
Q 000686 104 FCACALYDLASFNREYYKVIRECNRALGIE 133 (1351)
Q Consensus 104 f~A~lL~~La~~~~~Y~~av~ec~RaL~i~ 133 (1351)
-+|.....|. .|+.||+-.+.|+..+
T Consensus 326 ~ra~c~l~le----~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 326 RRANCHLALE----KWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHhhc
Confidence 9999999998 9999999999998664
No 206
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=22.70 E-value=7.7e+02 Score=28.57 Aligned_cols=98 Identities=13% Similarity=-0.112 Sum_probs=65.6
Q ss_pred CchHHHHHHHHHhhcCChHHHHHHHHHHHHhc-CCc--------------------------chhhHhhHHHHHHHHhhc
Q 000686 17 DTTAEGRAAIAAYDEGDYVGALKCIKNSESRY-RKC--------------------------PFYQHAKAFILYKIALQN 69 (1351)
Q Consensus 17 ~~~~e~~~al~~~~rg~~~~Alk~~k~la~~~-~~s--------------------------~~~h~~qg~i~~~~A~~~ 69 (1351)
...-..+.|.-.|.+|+..+|+..+++++..+ ... ..-....|.+++.+|+=.
T Consensus 183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~ 262 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL 262 (352)
T ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence 44567788999999999999999999999843 211 111244455666665543
Q ss_pred CCCCCcchhhHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHhhh
Q 000686 70 NDHDGGTVRNYIEEAAMSALQASFLLSSSTIIAYFCACALYDLAS 114 (1351)
Q Consensus 70 d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl~~a~f~A~lL~~La~ 114 (1351)
+...+.....-...++..|..|+.+.|+...--+.+|..+..+-.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~ 307 (352)
T PF02259_consen 263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLE 307 (352)
T ss_pred HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH
Confidence 321001122335668999999999999998877777777766653
No 207
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=22.40 E-value=25 Score=30.71 Aligned_cols=21 Identities=24% Similarity=0.616 Sum_probs=9.1
Q ss_pred HHHHHHHHHhcCceeEeecCcccc
Q 000686 276 LSEAIEFAKAHRSWKFWECCDCSE 299 (1351)
Q Consensus 276 Lseal~fak~n~sW~FW~C~~Cs~ 299 (1351)
|..-|++.+.++. |.||.|++
T Consensus 29 l~~fl~~~~~~~~---W~CPiC~~ 49 (50)
T PF02891_consen 29 LESFLESNQRTPK---WKCPICNK 49 (50)
T ss_dssp HHHHHHHHHHS------B-TTT--
T ss_pred HHHHHHHhhccCC---eECcCCcC
Confidence 4444555554444 89999975
No 208
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=21.26 E-value=60 Score=27.07 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=22.0
Q ss_pred CceeEeecCccccccC----ChHHHHHhHHhhcc
Q 000686 287 RSWKFWECCDCSEKYG----DWQSYMQHLCDFHD 316 (1351)
Q Consensus 287 ~sW~FW~C~~Cs~kF~----d~~~~~~Hl~~eH~ 316 (1351)
+...+..|..|++.+. .+..++.||...|+
T Consensus 12 ~~~~~a~C~~C~~~~~~~~~~ts~l~~HL~~~hp 45 (45)
T PF02892_consen 12 GDKKKAKCKYCGKVIKYSSGGTSNLKRHLKKKHP 45 (45)
T ss_dssp GCSS-EEETTTTEE-----SSTHHHHHHHHHTTH
T ss_pred CCcCeEEeCCCCeEEeeCCCcHHHHHHhhhhhCc
Confidence 3456789999999874 57899999988774
No 209
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=20.95 E-value=1.1e+03 Score=29.44 Aligned_cols=99 Identities=17% Similarity=0.045 Sum_probs=73.0
Q ss_pred CCCCCCchHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHH
Q 000686 12 PLPPFDTTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQA 91 (1351)
Q Consensus 12 ~~~~~~~~~e~~~al~~~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~A 91 (1351)
-|-|-..++++..|...++.||..|+-++.+-.=...|+..++.. |--|+..|.+ ++-+.||
T Consensus 257 KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~l------Y~~ar~gdta------------~dRlkRa 318 (531)
T COG3898 257 KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALL------YVRARSGDTA------------LDRLKRA 318 (531)
T ss_pred hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHH------HHHhcCCCcH------------HHHHHHH
Confidence 355667789999999999999999999999888777777655543 3334544433 3333333
Q ss_pred ---hhhccCchHHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCC
Q 000686 92 ---SFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGI 132 (1351)
Q Consensus 92 ---a~l~p~sl~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i 132 (1351)
.++=||..+.....|.+-+..+ +|-.+-.+++-+..+
T Consensus 319 ~~L~slk~nnaes~~~va~aAlda~----e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 319 KKLESLKPNNAESSLAVAEAALDAG----EFSAARAKAEAAARE 358 (531)
T ss_pred HHHHhcCccchHHHHHHHHHHHhcc----chHHHHHHHHHHhhh
Confidence 3456899999999999999888 888888888766654
No 210
>PRK10941 hypothetical protein; Provisional
Probab=20.84 E-value=5e+02 Score=30.49 Aligned_cols=81 Identities=14% Similarity=0.025 Sum_probs=63.9
Q ss_pred CCCCCchHHHHHHHHH-----hhcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHH
Q 000686 13 LPPFDTTAEGRAAIAA-----YDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMS 87 (1351)
Q Consensus 13 ~~~~~~~~e~~~al~~-----~~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~ 87 (1351)
|-+.+-+.-..|.+.- .+++++.+||+..+.+..=.|.+|.-.+-.|.+++++.. + ..|+..
T Consensus 171 L~~a~~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c----~---------~~A~~D 237 (269)
T PRK10941 171 LDEADNIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDC----E---------HVALSD 237 (269)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----c---------HHHHHH
Confidence 4444545555555554 578899999999999999999999999999999887643 2 558999
Q ss_pred HHHHhhhccCchHHHHHHH
Q 000686 88 ALQASFLLSSSTIIAYFCA 106 (1351)
Q Consensus 88 ~~~Aa~l~p~sl~~a~f~A 106 (1351)
+...++.+|++........
T Consensus 238 L~~fl~~~P~dp~a~~ik~ 256 (269)
T PRK10941 238 LSYFVEQCPEDPISEMIRA 256 (269)
T ss_pred HHHHHHhCCCchhHHHHHH
Confidence 9999999999987655544
No 211
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=20.29 E-value=4.3e+02 Score=36.16 Aligned_cols=102 Identities=20% Similarity=0.090 Sum_probs=64.4
Q ss_pred HHHHHHHh-hcCChHHHHHHHHHHHHhcCCcchhhHhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhhhccCch-
Q 000686 22 GRAAIAAY-DEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSST- 99 (1351)
Q Consensus 22 ~~~al~~~-~rg~~~~Alk~~k~la~~~~~s~~~h~~qg~i~~~~A~~~d~~~~~~K~~~L~~al~~~~~Aa~l~p~sl- 99 (1351)
-...+.+. ..|+..+|....+.....+|++..+++..|.++++. ..+++. . |.++++.+. ..-
T Consensus 34 ~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~-~~~~~~--~-----lv~~l~~~~-------~~~~ 98 (906)
T PRK14720 34 LDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSR-RPLNDS--N-----LLNLIDSFS-------QNLK 98 (906)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhh-cchhhh--h-----hhhhhhhcc-------cccc
Confidence 34445555 777899999999999999999999999999955544 344444 1 113333322 222
Q ss_pred --HHHHHHH---------HHHHHhhhcc---hHHHHHHHHHHHHhCCCCCCCCC
Q 000686 100 --IIAYFCA---------CALYDLASFN---REYYKVIRECNRALGIENPMEPE 139 (1351)
Q Consensus 100 --~~a~f~A---------~lL~~La~~~---~~Y~~av~ec~RaL~i~~P~DP~ 139 (1351)
.+.++|. .+||.||.-- +.++++...-.|+|.+. |.+|.
T Consensus 99 ~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~ 151 (906)
T PRK14720 99 WAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPE 151 (906)
T ss_pred hhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHH
Confidence 2223332 2444444321 36889999999999886 55554
No 212
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=20.28 E-value=4.7e+02 Score=29.97 Aligned_cols=105 Identities=20% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhccCch-----HHHHHHHHHHHHhhhcchHHHHHHHHHHHHhCCCCCCCCCcCccccCCCCchhhHHHH
Q 000686 83 EAAMSALQASFLLSSST-----IIAYFCACALYDLASFNREYYKVIRECNRALGIENPMEPERSSFVFKDPSQEWGIEKT 157 (1351)
Q Consensus 83 ~al~~~~~Aa~l~p~sl-----~~a~f~A~lL~~La~~~~~Y~~av~ec~RaL~i~~P~DP~~~~l~~~~~~~~~ri~~~ 157 (1351)
.|...|.+|..++|... .+..=+|-.++.|+ -++.|+..|-.|+-+.---..+.. |-+.+
T Consensus 113 eA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~----k~e~aI~dcsKaiel~pty~kAl~-----------RRAea 177 (271)
T KOG4234|consen 113 EANSKYQEALESCPSTSTEERSILYSNRAAALIKLR----KWESAIEDCSKAIELNPTYEKALE-----------RRAEA 177 (271)
T ss_pred HHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhh----hHHHHHHHHHhhHhcCchhHHHHH-----------HHHHH
Q ss_pred HHHHHHHHHHHH--HHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHhhhccCCCchhhhhhHHHH
Q 000686 158 KQELRELMKKSE--RKKRWAAISSVETIQESIKAAVKRVDEIKNQLARLRDSPEEEEMEPKLEE 219 (1351)
Q Consensus 158 k~eL~~Li~ka~--~ki~~~~~r~~~~~~~e~k~~~kt~~eie~~v~~~r~~~~~~~~~~~~~~ 219 (1351)
...+.-+=.-.+ .|| ....|+-=|+|=+-+|+.|...+...++.+
T Consensus 178 yek~ek~eealeDyKki-----------------~E~dPs~~ear~~i~rl~~~i~ernEkmKe 224 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKI-----------------LESDPSRREAREAIARLPPKINERNEKMKE 224 (271)
T ss_pred HHhhhhHHHHHHHHHHH-----------------HHhCcchHHHHHHHHhcCHHHHHHHHHHHH
Done!