Query 000686
Match_columns 1351
No_of_seqs 201 out of 1166
Neff 5.2
Searched_HMMs 29240
Date Tue Mar 26 18:20:07 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000686.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_455-459//hhsearch_pdb/000686hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 1.0 1 1 416.8 30.8 315 1005-1338 7-363 (367)
2 2ayn_A Ubiquitin carboxyl-term 1.0 1 1 409.6 26.1 315 1000-1336 8-396 (404)
3 2gfo_A Ubiquitin carboxyl-term 1.0 1 1 408.5 27.0 303 1004-1334 60-396 (396)
4 3nhe_A Ubiquitin carboxyl-term 1.0 1 1 401.9 30.5 306 1004-1335 7-344 (348)
5 3i3t_A Ubiquitin carboxyl-term 1.0 1 1 401.7 25.6 307 1005-1337 2-354 (355)
6 1nb8_A Ubiquitin carboxyl-term 1.0 1 1 395.1 29.0 294 1004-1335 4-316 (353)
7 1vjv_A Ubiquitin carboxyl-term 1.0 1 1 394.8 25.8 290 1002-1334 20-414 (415)
8 3mhs_A Ubiquitin carboxyl-term 1.0 1 1 392.9 25.3 298 1005-1334 140-474 (476)
9 2f1z_A Ubiquitin carboxyl-term 1.0 1 1 392.4 27.9 295 1003-1335 172-485 (522)
10 3ihp_A Ubiquitin carboxyl-term 1.0 1 1 382.8 25.6 288 1004-1334 342-853 (854)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=1.00 E-value=1 Score=416.77 Aligned_cols=315 Identities=17% Similarity=0.256 Sum_probs=238.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCC-----CCCHHHHHHHHHHHHH-C-CCCCCCHHHHHHHH
Q ss_conf 676545699870889999992195889999963898666689-----9851899999999980-6-89976929999999
Q 000686 1005 LGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKHD-----GNPCIVCAFFDICAAK-N-RGEAVDPTELRIAL 1077 (1351)
Q Consensus 1005 ~~tGL~NlgGTCYLNSILQsL~hlp~FRe~LLs~~~~~h~~~-----~d~cI~caLq~LF~s~-~-~~~~vsP~~Lr~aL 1077 (1351)
+.+||.|+|||||||||||||+|+|+||++|+...+..+... ...++.++|+.||..+ . ...+++|..|+.++
T Consensus 7 g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~~~l 86 (367)
T 2y6e_A 7 GLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFKTQV 86 (367)
T ss_dssp TCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 98087648856498999999977799999997372255504469888642999999999999974899873879999999
Q ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC---------CCC-CCCCCCCCC--CCCCCCCCCCEEEEEE
Q ss_conf 8530178553133446589999999999999850389999---------985-210012445--7876401012167996
Q 000686 1078 STYYCNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDD---------KPE-DMYKDRLHC--VDSNCLVHRIFGMDIF 1145 (1351)
Q Consensus 1078 ~~~~p~~~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~sd~---------~sE-~~~~~~~~c--~~~~siVh~LFgG~l~ 1145 (1351)
+... +.|..++||||||||.+||+.||+++......+ .+. ......|.. ....++|+++|+|++.
T Consensus 87 ~~~~---~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l~ 163 (367)
T 2y6e_A 87 GRFA---PQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFK 163 (367)
T ss_dssp HHHC---GGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEEE
T ss_pred HHHH---HHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf 9740---4108987878799999999999999875125776445565679606778999999887069823013376884
Q ss_pred EEEECCCCCCCCCC-CCCCEEEEECCCCHHHHHCC--------CCCCCCHHHHHHHHCC------CCCCCC-CCCCCC--
Q ss_conf 26641579985563-22420110026200000000--------0234389999987168------982002-699842--
Q 000686 1146 ESIECINCHMRSGY-QKCTYLSFGISANNLRSLKN--------EHMDMSSKKVLELMGL------GEQMTC-GCGQLN-- 1207 (1351)
Q Consensus 1146 s~i~C~~Cg~~S~~-~~F~dLsl~I~a~slr~~k~--------~~~~~SFeelLk~~~~------dd~~~C-~Cgk~~-- 1207 (1351)
++++|..|+++|.+ ++|.+++++|+....+.... .....+++++|+.+.. ++.|.| +|++.+
T Consensus 164 s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~~~a 243 (367)
T 2y6e_A 164 STLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQA 243 (367)
T ss_dssp EEEECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEETTTTEEECC
T ss_pred EEEEECCCCCEEEEECCCEEEEEECCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 35890899998533756705773179876775013320564456788889999998616164789987248787887507
Q ss_pred EEEEEEECCCCEEEEEEEEECCCCC-CCCCCCEEECCCC-CCCCCCCCCCC-CCCCEEEEEEEEEEEC--CCCEEEEEEE
Q ss_conf 0898870379649999984068876-4333330330474-20156453578-9996089999999857--9980899998
Q 000686 1208 SIYHSLWRLPHVFVSVIDWQRGDES-SEDISTTLSALSN-ELDLSKLFQGY-LPDYTYFVVSMVCFCK--DRQHSVCFLY 1282 (1351)
Q Consensus 1208 ~k~~~IsrlP~VLtIhLkRF~~~~s-~~dIsktl~~i~~-pLDLs~~y~g~-d~~~~Y~L~AVV~H~g--eGGHYvAyvR 1282 (1351)
.++..|.++|+||+|||+||..... ..++ ...+.||. .|||+++.... .....|+|+|||+|.| ++|||+||+|
T Consensus 244 ~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~-~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~~~ 322 (367)
T 2y6e_A 244 TKKFDLWSLPKILVVHLKRFSYNRYWRDKL-DTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYGAMGVGHYTAYAK 322 (367)
T ss_dssp EEEEEEEECCSEEEEEEECEEECSSCEEEC-CCCEECCSSCEECGGGBSCSSSCCCEEEEEEEEEEECSSSSCEEEEEEE
T ss_pred EEEEEEECCCCEEEEEEECEEECCCCCEEC-CCEEEECCCCCCHHHHCCCCCCCCCEEEEEEEEECCCCCCCCEEEEEEE
T ss_conf 899888248857899984765057663353-7638931776775664258788971488998856289998873667887
Q ss_pred ECCCCCCEEEEECCEEEECCCHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 23899978996399044817604442025765200000124268999853899942
Q 000686 1283 DDQHDEHYVQHSDSNVEAYSEVNILATDDNHSETLDMMISFQRLIGLKQDHDGSRL 1338 (1351)
Q Consensus 1283 ~~~~~g~W~~FDDs~Vt~Vsswe~Vl~k~~~s~~~p~~l~~QpylLFYq~~~~s~~ 1338 (1351)
+. ..++||.|||+.|+.|+ ++.|+. .+||+|||++.+.++-
T Consensus 323 ~~-~~~~W~~fnD~~V~~v~-~~~v~~-------------~~aYiLfY~r~~~~~~ 363 (367)
T 2y6e_A 323 NK-LNGKWYYFDDSNVSLAS-EDQIVT-------------KAAYVLFYQRRDDEFY 363 (367)
T ss_dssp CT-TTCCEEEEETTEEEECC-GGGTSS-------------TTEEEEEEEECCC---
T ss_pred CC-CCCEEEEECCCCCEECC-HHHCCC-------------CCCEEEEEEECCCCCC
T ss_conf 69-99908997798733998-888688-------------9737999997389878
No 2
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=1.00 E-value=1 Score=409.58 Aligned_cols=315 Identities=14% Similarity=0.111 Sum_probs=231.9
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCC---CCCCHHHHHHHHHHHHHC-CCCCCCHHHHHH
Q ss_conf 0475567654569987088999999219588999996389866668---998518999999999806-899769299999
Q 000686 1000 LNVNVLGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKH---DGNPCIVCAFFDICAAKN-RGEAVDPTELRI 1075 (1351)
Q Consensus 1000 ~~~~~~~tGL~NlgGTCYLNSILQsL~hlp~FRe~LLs~~~~~h~~---~~d~cI~caLq~LF~s~~-~~~~vsP~~Lr~ 1075 (1351)
......++||.|+|||||||||||||+|+|+||++|++.......+ ....|++|+|+.||..+. ...++.|..|..
T Consensus 8 ~~~~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~v~P~~~~~ 87 (404)
T 2ayn_A 8 ASAMELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIILLQ 87 (404)
T ss_dssp ---CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHCSEECCHHHHH
T ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 73669998865477043989999998768999999996451013478888543899999999999863898388699999
Q ss_pred HHHHHCCCCCCCC------CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCEEEEEEEE
Q ss_conf 9985301785531------33446589999999999999850389999985210012445--787640101216799626
Q 000686 1076 ALSTYYCNQNNFQ------EGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHC--VDSNCLVHRIFGMDIFES 1147 (1351)
Q Consensus 1076 aL~~~~p~~~~F~------~g~QqDA~EFL~~LLd~LH~~l~~~~sd~~sE~~~~~~~~c--~~~~siVh~LFgG~l~s~ 1147 (1351)
+|+... +.|. .+.||||||||.+||+.||+++.........+......|.. ....++|+++|+|++.++
T Consensus 88 ~l~~~~---~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~i~~~F~G~l~s~ 164 (404)
T 2ayn_A 88 FLHMAF---PQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETT 164 (404)
T ss_dssp HHHHHC---GGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC------------------CCHHHHHTCEEEEEE
T ss_pred HHHHHC---CHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHCCEEEEEE
T ss_conf 998857---00202356788665489999999999999874435677522100122100000113760245156799999
Q ss_pred EECCCCCCCC--C-CCCCCEEEEECCCCHHHHHCCCCCCCCHHHHHHHHCCC-CCCCC-CCCCCC--EEEEEEECCCCEE
Q ss_conf 6415799855--6-32242011002620000000002343899999871689-82002-699842--0898870379649
Q 000686 1148 IECINCHMRS--G-YQKCTYLSFGISANNLRSLKNEHMDMSSKKVLELMGLG-EQMTC-GCGQLN--SIYHSLWRLPHVF 1220 (1351)
Q Consensus 1148 i~C~~Cg~~S--~-~~~F~dLsl~I~a~slr~~k~~~~~~SFeelLk~~~~d-d~~~C-~Cgk~~--~k~~~IsrlP~VL 1220 (1351)
++|..|++.| . .++|.+++++|+... .++.++|+.+..+ -.+.| .|++.+ .++..|.++|+||
T Consensus 165 i~C~~C~~~s~s~~~e~f~~Lsl~i~~~~----------~~l~~~L~~~~~e~l~~~c~~c~~~~~~~k~~~i~~lP~vL 234 (404)
T 2ayn_A 165 MKCTESEEEEVTKGKENQLQLSCFINQEV----------KYLFTGLKLRLQEEITKQSPTLQRNALYIKSSKISRLPAYL 234 (404)
T ss_dssp EEESSSCCCCCBCCEEEESSEEEECSSSC----------CBHHHHHHHTTEECCCCEETTTTEECCEEEEEEEEECCSSE
T ss_pred EEECCCCCCCCCEEECCCCEEEEECCCCC----------CCHHHHHHHHCCCCEEECCHHHCCCCCEEEEEEHHHCCCCE
T ss_conf 98257898168524225746876569985----------42999998754401036252009830155553172199716
Q ss_pred EEEEEEECCCCCCCCCCCEE--ECCCCCCCCCCCCCC-------------------------------------------
Q ss_conf 99998406887643333303--304742015645357-------------------------------------------
Q 000686 1221 VSVIDWQRGDESSEDISTTL--SALSNELDLSKLFQG------------------------------------------- 1255 (1351)
Q Consensus 1221 tIhLkRF~~~~s~~dIsktl--~~i~~pLDLs~~y~g------------------------------------------- 1255 (1351)
+|||+||..........|+. +.||..|||++|...
T Consensus 235 ~i~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 314 (404)
T 2ayn_A 235 TIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPF 314 (404)
T ss_dssp EEEEECBCCCCSSSSCCBCCCCCBCCSEEECGGGBCHHHHHHTTTTTGGGTCTTC----------------------CCC
T ss_pred EEEEEEEEEECCCCCEECCCCEECCCCEEEHHHHCCHHHHHHCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 99999889824668310017446468256776744855541020135677655315401333110335555553334555
Q ss_pred -------CCCCCEEEEEEEEEEEC---CCCEEEEEEEECCCCCCEEEEECCEEEECCCHHHHHHCCCCCCCCCCCCCCCE
Q ss_conf -------89996089999999857---99808999982389997899639904481760444202576520000012426
Q 000686 1256 -------YLPDYTYFVVSMVCFCK---DRQHSVCFLYDDQHDEHYVQHSDSNVEAYSEVNILATDDNHSETLDMMISFQR 1325 (1351)
Q Consensus 1256 -------~d~~~~Y~L~AVV~H~g---eGGHYvAyvR~~~~~g~W~~FDDs~Vt~Vsswe~Vl~k~~~s~~~p~~l~~Qp 1325 (1351)
......|+|+|||+|.| ++|||+||+|+ ..++||.|||+.|+.|+ ++.|+....+ -....|
T Consensus 315 ~~~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~--~~~~W~~fnD~~V~~v~-~~~v~~~~~g------~~~~~a 385 (404)
T 2ayn_A 315 SFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKR--KQDEWIKFDDDKVSIVT-PEDILRLSGG------GDWHIA 385 (404)
T ss_dssp CCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEE--ETTEEEEEBTTBCCCBC-HHHHGGGGSS------SSSCEE
T ss_pred CCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEC--CCCEEEEEECCCCEECC-HHHHHHHHCC------CCCCEE
T ss_conf 55455576888539999999954899999886999989--99928996063456667-9999763079------977628
Q ss_pred EEEEEECCCCC
Q ss_conf 89998538999
Q 000686 1326 LIGLKQDHDGS 1336 (1351)
Q Consensus 1326 ylLFYq~~~~s 1336 (1351)
|||||++.+..
T Consensus 386 YiLfY~r~~~~ 396 (404)
T 2ayn_A 386 YVLLYGPRRVE 396 (404)
T ss_dssp EEEEEECC---
T ss_pred EEEEEEECCCC
T ss_conf 99999834777
No 3
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=1.00 E-value=1 Score=408.54 Aligned_cols=303 Identities=17% Similarity=0.252 Sum_probs=231.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCC-----CCCHHHHHHHHHHHH-HC-CCCCCCHHHHHHH
Q ss_conf 5676545699870889999992195889999963898666689-----985189999999998-06-8997692999999
Q 000686 1004 VLGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKHD-----GNPCIVCAFFDICAA-KN-RGEAVDPTELRIA 1076 (1351)
Q Consensus 1004 ~~~tGL~NlgGTCYLNSILQsL~hlp~FRe~LLs~~~~~h~~~-----~d~cI~caLq~LF~s-~~-~~~~vsP~~Lr~a 1076 (1351)
.+.+||.|+|||||||||||||+|+|+||++|+...+..+... ...++.++|+.++.. |. ...+++|..|+.+
T Consensus 60 ~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~~f~~~ 139 (396)
T 2gfo_A 60 PALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKIT 139 (396)
T ss_dssp TTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEECHHHHHHH
T ss_conf 78666561687416729999853788999999707421331235877741099999999999997099843778999999
Q ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC--C-------C-CCCCCCCCCC--CCCCCCCCCCEEEEE
Q ss_conf 98530178553133446589999999999999850389999--9-------8-5210012445--787640101216799
Q 000686 1077 LSTYYCNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDD--K-------P-EDMYKDRLHC--VDSNCLVHRIFGMDI 1144 (1351)
Q Consensus 1077 L~~~~p~~~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~sd~--~-------s-E~~~~~~~~c--~~~~siVh~LFgG~l 1144 (1351)
++... +.|..++||||||||.+||+.||+++....... + + .......|.. ....++|+++|+|++
T Consensus 140 l~~~~---~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~l 216 (396)
T 2gfo_A 140 IGKIN---DQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQF 216 (396)
T ss_dssp HHHHC---GGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCEEE
T ss_pred HHHHC---HHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCEE
T ss_conf 99745---433487887759999999999999986531455445555556642567789998766506883402008688
Q ss_pred EEEEECCCCCCCCCC-CCCCEEEEECCCCHHHHHCCCCCCCCHHHHHHHHCC------CCCCCC-CCCCCCE--EEEEEE
Q ss_conf 626641579985563-224201100262000000000234389999987168------982002-6998420--898870
Q 000686 1145 FESIECINCHMRSGY-QKCTYLSFGISANNLRSLKNEHMDMSSKKVLELMGL------GEQMTC-GCGQLNS--IYHSLW 1214 (1351)
Q Consensus 1145 ~s~i~C~~Cg~~S~~-~~F~dLsl~I~a~slr~~k~~~~~~SFeelLk~~~~------dd~~~C-~Cgk~~~--k~~~Is 1214 (1351)
.++++|..|+++|.+ ++|.+++++|+... ..+++++|+.+.. ++.|.| +|+..+. ++..|.
T Consensus 217 ~s~i~C~~C~~~s~~~e~f~~LsL~ip~~~---------~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~~~~a~k~~~i~ 287 (396)
T 2gfo_A 217 KSTVQCLTCHKKSRTFEAFMYLSLPLASTS---------KCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIW 287 (396)
T ss_dssp EEEEEETTTCCEEEEEEEESSEEECCSCSS---------EEEHHHHHHHHTSCEEECSTTCEEETTTTEEECEEEEEEEE
T ss_pred EEEEEECCCCCEECCCCCCEEEEECCCCCC---------CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
T ss_conf 777885799962032446312333266346---------57999999983772251687641157755545358999980
Q ss_pred CCCCEEEEEEEEECCCCC-CCCCCCEEECCCC-CCCCCCCCCCC-CCCCEEEEEEEEEEEC--CCCEEEEEEEECCCCCC
Q ss_conf 379649999984068876-4333330330474-20156453578-9996089999999857--99808999982389997
Q 000686 1215 RLPHVFVSVIDWQRGDES-SEDISTTLSALSN-ELDLSKLFQGY-LPDYTYFVVSMVCFCK--DRQHSVCFLYDDQHDEH 1289 (1351)
Q Consensus 1215 rlP~VLtIhLkRF~~~~s-~~dIsktl~~i~~-pLDLs~~y~g~-d~~~~Y~L~AVV~H~g--eGGHYvAyvR~~~~~g~ 1289 (1351)
++|+||+|||+||..... ..++ .+.+.|+. .|||+++..+. .....|+|+|||+|.| ++|||+||+|+. ..++
T Consensus 288 ~lP~vLiihLkRF~~~~~~~~K~-~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~-~~~~ 365 (396)
T 2gfo_A 288 KLPPVLLVHLKRFSYDGRWKQKL-QTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNA-ARQR 365 (396)
T ss_dssp ECCSEEEEEECCEEECSSSEEEC-CCEEECCSSCBCCGGGBCSCCSSCCCBEEEEEEEEESCTTTCEEEEEEEET-TTTE
T ss_pred CCCCEEEEEECCEECCCCCCEEC-CCEEECCHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEECCC-CCCC
T ss_conf 37857999850110257610016-744854534245664334777787358899999856999998307998579-9998
Q ss_pred EEEEECCEEEECCCHHHHHHCCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 899639904481760444202576520000012426899985389
Q 000686 1290 YVQHSDSNVEAYSEVNILATDDNHSETLDMMISFQRLIGLKQDHD 1334 (1351)
Q Consensus 1290 W~~FDDs~Vt~Vsswe~Vl~k~~~s~~~p~~l~~QpylLFYq~~~ 1334 (1351)
||.|||+.|+.|+ ++.|.. .+||+|||++.+
T Consensus 366 W~~fnD~~V~~v~-~~~v~~-------------~~aYiLfY~r~~ 396 (396)
T 2gfo_A 366 WFKFDDHEVSDIS-VSSVKS-------------SAAYILFYTSLG 396 (396)
T ss_dssp EEEEETTEEEECC-HHHHSC-------------TTEEEEEEECC-
T ss_pred EEEEECCCEEECC-HHHCCC-------------CCCEEEEEEECC
T ss_conf 7997488738988-888689-------------985699999759
No 4
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=1.00 E-value=1 Score=401.94 Aligned_cols=306 Identities=19% Similarity=0.246 Sum_probs=235.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCC---CCCCHHHHHHHHHHHH-H-C-CCCCCCHHHHHHHH
Q ss_conf 567654569987088999999219588999996389866668---9985189999999998-0-6-89976929999999
Q 000686 1004 VLGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKH---DGNPCIVCAFFDICAA-K-N-RGEAVDPTELRIAL 1077 (1351)
Q Consensus 1004 ~~~tGL~NlgGTCYLNSILQsL~hlp~FRe~LLs~~~~~h~~---~~d~cI~caLq~LF~s-~-~-~~~~vsP~~Lr~aL 1077 (1351)
.+.+||.|+||||||||+||||+|+|+||+++++..+..... ....+++++|+.+|.. + . ....++|..|..++
T Consensus 7 ~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~~~~~l 86 (348)
T 3nhe_A 7 QGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQI 86 (348)
T ss_dssp CSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTTCCTTCEECCHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 99977875883479889999996679999998524466761468873118999999999999717898724899999999
Q ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC--CC--------CCCCCCC--CCCCCCCCCCCEEEEEE
Q ss_conf 853017855313344658999999999999985038999998--52--------1001244--57876401012167996
Q 000686 1078 STYYCNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKP--ED--------MYKDRLH--CVDSNCLVHRIFGMDIF 1145 (1351)
Q Consensus 1078 ~~~~p~~~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~sd~~s--E~--------~~~~~~~--c~~~~siVh~LFgG~l~ 1145 (1351)
.... +.|..+.||||||||..||+.||+++......+.. +. .....|. .....++++++|+|++.
T Consensus 87 ~~~~---~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~ 163 (348)
T 3nhe_A 87 QRYA---PRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLK 163 (348)
T ss_dssp HHHS---GGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHHCEEEE
T ss_pred HHHH---HHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEE
T ss_conf 9860---6407987447999999999999998753046788775222468822778999999875069845555124999
Q ss_pred EEEECCCCCCCCCC-CCCCEEEEECCCCHHHHHCCCCCCCCHHHHHHHHCC------CCCCCC-CCCCCCE--EEEEEEC
Q ss_conf 26641579985563-224201100262000000000234389999987168------982002-6998420--8988703
Q 000686 1146 ESIECINCHMRSGY-QKCTYLSFGISANNLRSLKNEHMDMSSKKVLELMGL------GEQMTC-GCGQLNS--IYHSLWR 1215 (1351)
Q Consensus 1146 s~i~C~~Cg~~S~~-~~F~dLsl~I~a~slr~~k~~~~~~SFeelLk~~~~------dd~~~C-~Cgk~~~--k~~~Isr 1215 (1351)
++++|..|++.|.+ ++|.+++++|+... ....++.++|+.+.. +++|.| +|+..+. ++..|.+
T Consensus 164 ~~~~C~~C~~~s~~~e~f~~LsL~i~~~~-------~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~ 236 (348)
T 3nhe_A 164 SSLTCTDCGYCSTVFDPFWDLSLPIAKRG-------YPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQR 236 (348)
T ss_dssp EEEEETTTCCEEEEEEEESSEEECCCSSC-------SSCEEHHHHHHHHHSCEEECGGGCCEETTTTEECCEEEEEEEEE
T ss_pred EEEECCCCCCEEEEECCCEEEEEECCCCC-------CCCCCHHHHHHHHCCCEEECCCCCEECCCCCCCCCEEEEEEEEC
T ss_conf 89994899988644446547764279855-------67778999998746805716888567888888564899988132
Q ss_pred CCCEEEEEEEEECCCC-CCCCCCCEEECCCC-CCCCCCCCCCCCCCCEEEEEEEEEEEC--CCCEEEEEEEECCCCCCEE
Q ss_conf 7964999998406887-64333330330474-201564535789996089999999857--9980899998238999789
Q 000686 1216 LPHVFVSVIDWQRGDE-SSEDISTTLSALSN-ELDLSKLFQGYLPDYTYFVVSMVCFCK--DRQHSVCFLYDDQHDEHYV 1291 (1351)
Q Consensus 1216 lP~VLtIhLkRF~~~~-s~~dIsktl~~i~~-pLDLs~~y~g~d~~~~Y~L~AVV~H~g--eGGHYvAyvR~~~~~g~W~ 1291 (1351)
+|+||+|||+||.... ...++ ...+.++. .|||+++.........|+|+|||+|.| ++|||+||+|+. ..++||
T Consensus 237 lP~vL~i~lkRf~~~~~~~~K~-~~~v~fp~~~ldl~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~~~~-~~~~W~ 314 (348)
T 3nhe_A 237 FPKILVLHLKRFSESRIRTSKL-TTFVNFPLRDLDLREFASENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSP-GTGEWH 314 (348)
T ss_dssp CCSEEEEEECCBCCCSSCCCBC-CCCEECCSSCEECGGGBCTTCCCCEEEEEEEEEEEECSSCEEEEEEEECT-TTCCEE
T ss_pred CCCEEEEEEECCCCCCCCEEEC-CCCEECCCCCCCHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCC-CCCCEE
T ss_conf 9865799987534567741456-86230347758776606788899867999999704899996438888169-989379
Q ss_pred EEECCEEEECCCHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 96399044817604442025765200000124268999853899
Q 000686 1292 QHSDSNVEAYSEVNILATDDNHSETLDMMISFQRLIGLKQDHDG 1335 (1351)
Q Consensus 1292 ~FDDs~Vt~Vsswe~Vl~k~~~s~~~p~~l~~QpylLFYq~~~~ 1335 (1351)
.|||+.|+.|+. +.|.. .+||+|||++.+.
T Consensus 315 ~~nD~~V~~v~~-~~v~~-------------~~aY~LfY~r~~~ 344 (348)
T 3nhe_A 315 TFNDSSVTPMSS-SQVRT-------------SDAYLLFYELASP 344 (348)
T ss_dssp EEETTEEEEECG-GGTCC-------------TTEEEEEEEECC-
T ss_pred EEECCCCEECCH-HHCCC-------------CCCEEEEEEECCC
T ss_conf 983898069988-88578-------------9836999996487
No 5
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=1.00 E-value=1 Score=401.74 Aligned_cols=307 Identities=19% Similarity=0.217 Sum_probs=232.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCC--CCCCHHHHHHHHHHHHHC---CCCCCCHHHHHHHHHH
Q ss_conf 67654569987088999999219588999996389866668--998518999999999806---8997692999999985
Q 000686 1005 LGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKH--DGNPCIVCAFFDICAAKN---RGEAVDPTELRIALST 1079 (1351)
Q Consensus 1005 ~~tGL~NlgGTCYLNSILQsL~hlp~FRe~LLs~~~~~h~~--~~d~cI~caLq~LF~s~~---~~~~vsP~~Lr~aL~~ 1079 (1351)
+.+||.|+||||||||+||||+|+|+||+++++........ ....++.++|+.+|..+. ...+++|..|..++..
T Consensus 2 G~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~~l~~ 81 (355)
T 3i3t_A 2 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQK 81 (355)
T ss_dssp -CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHHHHHH
T ss_pred CCCCCEECCCCHHHHHHHHHHHCCHHHHHHHHHCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 97475889826698999999867899999997254887567899526999999999999845898874458999999997
Q ss_pred HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC------------------C-------CCCCCCCCC--CCC
Q ss_conf 3017855313344658999999999999985038999998------------------5-------210012445--787
Q 000686 1080 YYCNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKP------------------E-------DMYKDRLHC--VDS 1132 (1351)
Q Consensus 1080 ~~p~~~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~sd~~s------------------E-------~~~~~~~~c--~~~ 1132 (1351)
.. +.|..+.||||||||.+||+.||+++........+ + ......|.. ...
T Consensus 82 ~~---~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (355)
T 3i3t_A 82 YV---PSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLERE 158 (355)
T ss_dssp HC---GGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHHC
T ss_pred HC---HHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 38---422898766789999999999999976541378752356766676444432235777887889999999852316
Q ss_pred CCCCCCCEEEEEEEEEECCCCCCCCCC-CCCCEEEEECCCCHHHHHCCCCCCCCHHHHHHHHCCC------CCCCC-CCC
Q ss_conf 640101216799626641579985563-2242011002620000000002343899999871689------82002-699
Q 000686 1133 NCLVHRIFGMDIFESIECINCHMRSGY-QKCTYLSFGISANNLRSLKNEHMDMSSKKVLELMGLG------EQMTC-GCG 1204 (1351)
Q Consensus 1133 ~siVh~LFgG~l~s~i~C~~Cg~~S~~-~~F~dLsl~I~a~slr~~k~~~~~~SFeelLk~~~~d------d~~~C-~Cg 1204 (1351)
.++|+++|+|++.++++|..|++.+.. ++|.+++++|+..... ....++.++|+.+... +.|.| +|+
T Consensus 159 ~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~-----~~~~sl~~~L~~~~~~e~l~~~n~~~C~~C~ 233 (355)
T 3i3t_A 159 DSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFA-----GGKVSLRDCFNLFTKEEELESENAPVCDRCR 233 (355)
T ss_dssp CSHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC------------CBHHHHHHHHHCCEEECGGGCCCCSSSC
T ss_pred CCCCCCCCCEEEEEEEEECCCCCCCEEECCCEEECCCCCCCCCC-----CCCCCHHHHHHHHCCCCCCCCCCCEECCCCC
T ss_conf 98154533579995589389999840222234652567864445-----6765899999985783545899985598878
Q ss_pred CCCE--EEEEEECCCCEEEEEEEEECCCCCC-CCCCCEEECCCC-CCCCCCCCCCCCCCCEEEEEEEEEEEC--CCCEEE
Q ss_conf 8420--8988703796499999840688764-333330330474-201564535789996089999999857--998089
Q 000686 1205 QLNS--IYHSLWRLPHVFVSVIDWQRGDESS-EDISTTLSALSN-ELDLSKLFQGYLPDYTYFVVSMVCFCK--DRQHSV 1278 (1351)
Q Consensus 1205 k~~~--k~~~IsrlP~VLtIhLkRF~~~~s~-~dIsktl~~i~~-pLDLs~~y~g~d~~~~Y~L~AVV~H~g--eGGHYv 1278 (1351)
+++. ++..|.++|+||+|||+||...... .++ .+.+.++. .|||+++.........|+|+|||+|.| ++|||+
T Consensus 234 ~~~~a~k~~~i~~lP~vL~i~lkRF~~~~~~~~K~-~~~v~fp~~~l~l~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~ 312 (355)
T 3i3t_A 234 QKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKS-SVGVDFPLQRLSLGDFASDKAGSPVYQLYALCNHSGSVHYGHYT 312 (355)
T ss_dssp CCCCEEEEEEEEECCSEEEEEECCEECCSSCCEEC-CCCCBCCSSCEECGGGBC----CCEEEEEEEEEEEEETTEEEEE
T ss_pred CCCCEEEEEECCCCCHHEEEEHHHEECCCCCCEEC-CCCEECCCCCCCCHHHCCCCCCCCCEEEEEEEEECCCCCCCEEE
T ss_conf 86623799881139813099760200378980478-86160776546730211589999645999998826789998079
Q ss_pred EEEEECCCCCCEEEEECCEEEECCCHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 99982389997899639904481760444202576520000012426899985389994
Q 000686 1279 CFLYDDQHDEHYVQHSDSNVEAYSEVNILATDDNHSETLDMMISFQRLIGLKQDHDGSR 1337 (1351)
Q Consensus 1279 AyvR~~~~~g~W~~FDDs~Vt~Vsswe~Vl~k~~~s~~~p~~l~~QpylLFYq~~~~s~ 1337 (1351)
||+| ..+.||.|||+.|+.|+ ++.|+. .+||+|||++.+..|
T Consensus 313 ~~~~---~~~~W~~~nD~~V~~v~-~~~v~~-------------~~aYiLfY~r~~~~~ 354 (355)
T 3i3t_A 313 ALCR---CQTGWHVYNDSRVSPVS-ENQVAS-------------SEGYVLFYQLMQEPP 354 (355)
T ss_dssp EEEE---ETTEEEEEETTEEEEEC-HHHHHT-------------SCCSEEEEEEC----
T ss_pred EEEE---CCCEEEEECCCCCEECC-HHHCCC-------------CCCEEEEEEECCCCC
T ss_conf 9997---29928998198717988-999078-------------986799999606889
No 6
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=1.00 E-value=1 Score=395.07 Aligned_cols=294 Identities=12% Similarity=0.124 Sum_probs=224.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHCC
Q ss_conf 567654569987088999999219588999996389866668998518999999999806-8997692999999985301
Q 000686 1004 VLGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKHDGNPCIVCAFFDICAAKN-RGEAVDPTELRIALSTYYC 1082 (1351)
Q Consensus 1004 ~~~tGL~NlgGTCYLNSILQsL~hlp~FRe~LLs~~~~~h~~~~d~cI~caLq~LF~s~~-~~~~vsP~~Lr~aL~~~~p 1082 (1351)
.+.+||.|+||||||||+||||+|+|+||++++..... ......+++++|+.+|..+. ...++.|..|...++.
T Consensus 4 ~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~--~~~~~~~~~~~l~~lf~~l~~~~~~~~~~~l~~~~~~--- 78 (353)
T 1nb8_A 4 TGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE--GDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGW--- 78 (353)
T ss_dssp SSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCT--TSCTTTCHHHHHHHHHHHHHHCSSCBCCHHHHHHHTC---
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCC--CCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCC---
T ss_conf 89987564745449899999997779999999837877--7765440999999999988605887787799864188---
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCC-CCC
Q ss_conf 7855313344658999999999999985038999998521001244578764010121679962664157998556-322
Q 000686 1083 NQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRSG-YQK 1161 (1351)
Q Consensus 1083 ~~~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~sd~~sE~~~~~~~~c~~~~siVh~LFgG~l~s~i~C~~Cg~~S~-~~~ 1161 (1351)
+.|..++||||||||.+||+.||+++... ...++|+++|+|++.++++|..|++.|. .++
T Consensus 79 --~~~~~~~QqDA~EFl~~LLd~L~~~~~~~-----------------~~~s~i~~~F~g~~~~~i~C~~C~~~s~~~e~ 139 (353)
T 1nb8_A 79 --ETLDSFMQHDVQELCRVLLDNVENKMKGT-----------------CVEGTIPKLFRGKMVSYIQCKEVDYRSDRRED 139 (353)
T ss_dssp --CBTTTTTTSCHHHHHHHHHHHHHHHTTTS-----------------TTTTHHHHHHCEEEEEEEEESSSCCEEEEEEE
T ss_pred --CCCCCCCCHHHHHHHHHHHHHHHHHHCCC-----------------CCCCHHHHHCEEEEEEEEEECCCCCEECEEEE
T ss_conf --77786532639999999999999884488-----------------75551235030589999992568970022223
Q ss_pred CCEEEEECCCCHHHHHCCCCCCCCHHHHHHHHC----C--CCCCCC-CCCCCC-EEEEEEECCCCEEEEEEEEECCCCC-
Q ss_conf 420110026200000000023438999998716----8--982002-699842-0898870379649999984068876-
Q 000686 1162 CTYLSFGISANNLRSLKNEHMDMSSKKVLELMG----L--GEQMTC-GCGQLN-SIYHSLWRLPHVFVSVIDWQRGDES- 1232 (1351)
Q Consensus 1162 F~dLsl~I~a~slr~~k~~~~~~SFeelLk~~~----~--dd~~~C-~Cgk~~-~k~~~IsrlP~VLtIhLkRF~~~~s- 1232 (1351)
|.+++++|+.. .++.++|..+. + ++.|.| .|+... .++..|.++|+||+|||+||.....
T Consensus 140 f~~LsL~i~~~-----------~~l~~~L~~~~~~E~l~~~~~~~C~~c~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~ 208 (353)
T 1nb8_A 140 YYDIQLSIKGK-----------KNIFESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQT 208 (353)
T ss_dssp ESCEEECCTTC-----------SBHHHHHHHHTCCEEECTTTCEECGGGCEECEEEEEEESCCCSEEEEEECCCC-----
T ss_pred EEEEEEEECCC-----------CCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEHHCCCCCEEEEEECEEEECCC
T ss_conf 27998897997-----------6457799985173424787531477675175689888400997259998367984235
Q ss_pred --CCCCCCEEECCCCCCCCCCCCCCCC--CCCEEEEEEEEEEEC--CCCEEEEEEEECCCCCCEEEEECCEEEECCCHHH
Q ss_conf --4333330330474201564535789--996089999999857--9980899998238999789963990448176044
Q 000686 1233 --SEDISTTLSALSNELDLSKLFQGYL--PDYTYFVVSMVCFCK--DRQHSVCFLYDDQHDEHYVQHSDSNVEAYSEVNI 1306 (1351)
Q Consensus 1233 --~~dIsktl~~i~~pLDLs~~y~g~d--~~~~Y~L~AVV~H~g--eGGHYvAyvR~~~~~g~W~~FDDs~Vt~Vsswe~ 1306 (1351)
..++ ...+.+|..|||+++....+ ....|+|+|||+|.| ++|||+||+|+. ..++||.|||+.|+.|+ ++.
T Consensus 209 ~~~~K~-~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~-~~~~W~~fnD~~V~~v~-~~~ 285 (353)
T 1nb8_A 209 DQNIKI-NDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPK-GDGKWCKFDDDVVSRCT-KEE 285 (353)
T ss_dssp ---CCC-CCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEESSTTCCCEEEEECTT-SSSCCEEEETTEEEECC-HHH
T ss_pred CCEEEC-CCEEECCCEEEHHHHHCCCCCCCCCEEEEEEEEEEECCCCCCEEEEEEECC-CCCCEEEEECCCEEECC-HHH
T ss_conf 950755-828977976652352213378998159999999974789886799999459-99988999896028978-899
Q ss_pred HHHCCCCCCCCC--CCCCCCEEEEEEECCCC
Q ss_conf 420257652000--00124268999853899
Q 000686 1307 LATDDNHSETLD--MMISFQRLIGLKQDHDG 1335 (1351)
Q Consensus 1307 Vl~k~~~s~~~p--~~l~~QpylLFYq~~~~ 1335 (1351)
|+..+-+..-.. .....+||+|||++.+.
T Consensus 286 v~~~~~gg~~~~~~~~~~~~aYiLfY~r~~~ 316 (353)
T 1nb8_A 286 AIEHNYGGHDDDLSVRHCTNAYMLVYIRESK 316 (353)
T ss_dssp HTGGGSCCC-------CCEEEEEEEEEETTT
T ss_pred HHHHHCCCCCCCCCCCCCCEEEEEEEEECCH
T ss_conf 9887238976544467688079999998853
No 7
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=1.00 E-value=1 Score=394.81 Aligned_cols=290 Identities=14% Similarity=0.112 Sum_probs=221.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCC-------CCHHHHHHHHHHHHHC--CCCCCCHHH
Q ss_conf 7556765456998708899999921958899999638986666899-------8518999999999806--899769299
Q 000686 1002 VNVLGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKHDG-------NPCIVCAFFDICAAKN--RGEAVDPTE 1072 (1351)
Q Consensus 1002 ~~~~~tGL~NlgGTCYLNSILQsL~hlp~FRe~LLs~~~~~h~~~~-------d~cI~caLq~LF~s~~--~~~~vsP~~ 1072 (1351)
....++||.|+|||||||||||||+|+|+||++|++.......... ..|++++|+.||..+. ...+++|..
T Consensus 20 ~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p~~ 99 (415)
T 1vjv_A 20 FAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLPVV 99 (415)
T ss_dssp CCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECCHH
T ss_pred CCCCCCCCEECCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 57898887738851399999999974799999997126544667764334441138999999999998607998437799
Q ss_pred HHHHHHHHCCCCCCCC-------CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 9999985301785531-------334465899999999999998503899999852100124457876401012167996
Q 000686 1073 LRIALSTYYCNQNNFQ-------EGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIF 1145 (1351)
Q Consensus 1073 Lr~aL~~~~p~~~~F~-------~g~QqDA~EFL~~LLd~LH~~l~~~~sd~~sE~~~~~~~~c~~~~siVh~LFgG~l~ 1145 (1351)
|..+|.... +.|. .+.||||+|||.+||+.||.++. .++++++|+ ++.
T Consensus 100 ~~~~l~~~~---~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~---------------------~~~i~~~F~-~~~ 154 (415)
T 1vjv_A 100 LLNTLRKCY---PQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFG---------------------DKFSEDFRI-QFK 154 (415)
T ss_dssp HHHHHHHHC---GGGGCBC----CBCCCCHHHHHHHHHHHHHHHHT---------------------HHHHTTTCE-EEE
T ss_pred HHHHHHHHC---CHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC---------------------CCHHHHHHH-HHE
T ss_conf 999998758---5021046677776666899999999999998734---------------------346999998-611
Q ss_pred EEEECCCCCCCC---CCCCCCEEEEECCCCHHHHHCCCCCCCCHHHHHHHHCCC-CCCCC-CCCCCC--EEEEEEECCCC
Q ss_conf 266415799855---632242011002620000000002343899999871689-82002-699842--08988703796
Q 000686 1146 ESIECINCHMRS---GYQKCTYLSFGISANNLRSLKNEHMDMSSKKVLELMGLG-EQMTC-GCGQLN--SIYHSLWRLPH 1218 (1351)
Q Consensus 1146 s~i~C~~Cg~~S---~~~~F~dLsl~I~a~slr~~k~~~~~~SFeelLk~~~~d-d~~~C-~Cgk~~--~k~~~IsrlP~ 1218 (1351)
++++|..|++.| ..++|.+++++|+... .++.++|+.+..+ -.+.| .|+..+ .++..|.++|+
T Consensus 155 ~~~~C~~C~~~s~s~~~e~f~~Lsl~i~~~~----------~~l~~~L~~~~~e~i~~~c~~c~~~~~a~k~~~i~~lP~ 224 (415)
T 1vjv_A 155 TTIKDTANDNDITVKENESDSKLQCHISGTT----------NFMRNGLLEGLNEKIEKRSDLTGANSIYSVEKKISRLPK 224 (415)
T ss_dssp EEEEETTEEEEEEEECCCEESCEEECCCTTC----------CBHHHHHHHHHEEC---------CCCCEEEEEEEEECBS
T ss_pred EEEEECCCCCCCCCCCCCCCEEEEECCCCCC----------CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC
T ss_conf 7999779998746313545436651256661----------238999998744555314612178642788877026997
Q ss_pred EEEEEEEEECCCCCCCCCCCE--EECCCCCCCCCCCCCC-----------------------------------------
Q ss_conf 499999840688764333330--3304742015645357-----------------------------------------
Q 000686 1219 VFVSVIDWQRGDESSEDISTT--LSALSNELDLSKLFQG----------------------------------------- 1255 (1351)
Q Consensus 1219 VLtIhLkRF~~~~s~~dIskt--l~~i~~pLDLs~~y~g----------------------------------------- 1255 (1351)
||+|||+||..........|+ .+.||..|||++|...
T Consensus 225 vL~i~LkRF~~~~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~~ 304 (415)
T 1vjv_A 225 FLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVM 304 (415)
T ss_dssp EEEEEECCEEEETTTTEEEECCCCCBCCSEEECGGGBCHHHHHHHHHHHHHHHHHHHHHHHC----------------CC
T ss_pred EEEEEEEEEEEECCCCCCHHHCCCCCCCCEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 15999988998378884043167647995767678428333222121579999875333345665531022555444434
Q ss_pred -----------------------------------CCCCCEEEEEEEEEEEC---CCCEEEEEEEE-CCCCCCEEEEECC
Q ss_conf -----------------------------------89996089999999857---99808999982-3899978996399
Q 000686 1256 -----------------------------------YLPDYTYFVVSMVCFCK---DRQHSVCFLYD-DQHDEHYVQHSDS 1296 (1351)
Q Consensus 1256 -----------------------------------~d~~~~Y~L~AVV~H~g---eGGHYvAyvR~-~~~~g~W~~FDDs 1296 (1351)
......|+|+|||+|.| ++|||+||+|+ . ..++||.|||+
T Consensus 305 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~-~~~~W~~fnD~ 383 (415)
T 1vjv_A 305 TPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDEL-DENKWYKFNDD 383 (415)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEEEEESSSTTSSEEEEEEECSS-CTTCEEEEETT
T ss_pred CCCHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEECCC-CCCCEEEEECC
T ss_conf 53102220125677655443332053334323235678843889999993589999988799994788-89948996788
Q ss_pred EEEECCCHHHHHHCCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 04481760444202576520000012426899985389
Q 000686 1297 NVEAYSEVNILATDDNHSETLDMMISFQRLIGLKQDHD 1334 (1351)
Q Consensus 1297 ~Vt~Vsswe~Vl~k~~~s~~~p~~l~~QpylLFYq~~~ 1334 (1351)
.|+.|+ ++.|+....+. ....||+|||++.+
T Consensus 384 ~V~~v~-~~~v~~~~~g~------~~~~aYiLfY~r~~ 414 (415)
T 1vjv_A 384 KVSVVE-KEKIESLAGGG------ESDSALILMYKGFG 414 (415)
T ss_dssp EEEEEC-HHHHHGGGCCT------TSCEEEEEEEEETT
T ss_pred CCEECC-HHHHHHHCCCC------CCCEEEEEEEEECC
T ss_conf 576727-99976420798------76607999999547
No 8
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=1.00 E-value=1 Score=392.87 Aligned_cols=298 Identities=17% Similarity=0.230 Sum_probs=224.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCC--CCCCHHHHHHHHHHHHH-C----------CCCCCCHH
Q ss_conf 67654569987088999999219588999996389866668--99851899999999980-6----------89976929
Q 000686 1005 LGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKH--DGNPCIVCAFFDICAAK-N----------RGEAVDPT 1071 (1351)
Q Consensus 1005 ~~tGL~NlgGTCYLNSILQsL~hlp~FRe~LLs~~~~~h~~--~~d~cI~caLq~LF~s~-~----------~~~~vsP~ 1071 (1351)
+.+||.|+|||||||||||||+|+|+||++|+...+..... ....|+.|+|+.+|..+ . ....+.|.
T Consensus 140 G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~ 219 (476)
T 3mhs_A 140 GLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSSTSTNRQT 219 (476)
T ss_dssp CCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHSCCCC--------CCCSCH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 99787708846799899999867899999987450355445788641058999999999961203333456665565750
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECC
Q ss_conf 99999985301785531334465899999999999998503899999852100124457876401012167996266415
Q 000686 1072 ELRIALSTYYCNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECI 1151 (1351)
Q Consensus 1072 ~Lr~aL~~~~p~~~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~sd~~sE~~~~~~~~c~~~~siVh~LFgG~l~s~i~C~ 1151 (1351)
.+...+...+...+.|..+.||||||||.+||+.||+++......... . .........|+|+++|+|++.++++|.
T Consensus 220 ~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~-~---~~~~~~~~~s~i~~~F~G~l~~~~~C~ 295 (476)
T 3mhs_A 220 GFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKE-V---SRANNKQCECIVHTVFEGSLESSIVCP 295 (476)
T ss_dssp HHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC-----------CCCSCCSHHHHHSCEEEEEEEECT
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC-C---CCCCCCCCCCCCEEECCEEEEEEEEEC
T ss_conf 089999998874512388877599999999999999997641566533-4---544556688800211325999889989
Q ss_pred CCCCCCC--CCCCCEEEEECCCCHHHHHCCCCCCCCHHHHHHHHCC-----CCCCCC-CCCCCCE--EEEEEECCCCEEE
Q ss_conf 7998556--3224201100262000000000234389999987168-----982002-6998420--8988703796499
Q 000686 1152 NCHMRSG--YQKCTYLSFGISANNLRSLKNEHMDMSSKKVLELMGL-----GEQMTC-GCGQLNS--IYHSLWRLPHVFV 1221 (1351)
Q Consensus 1152 ~Cg~~S~--~~~F~dLsl~I~a~slr~~k~~~~~~SFeelLk~~~~-----dd~~~C-~Cgk~~~--k~~~IsrlP~VLt 1221 (1351)
.|+++|. .++|.+++++|+.. .++.++|+.+.. ++.|.| +|+..+. ++..|.++|+||+
T Consensus 296 ~C~~~s~~~~e~f~~LsL~i~~~-----------~sl~~~L~~~~~~E~l~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~ 364 (476)
T 3mhs_A 296 GCQNNSKTTIDPFLDLSLDIKDK-----------KKLYECLDSFHKKEQLKDFNYHCGECNSTQDAIKQLGIHKLPSVLV 364 (476)
T ss_dssp TTCCCCEEEEEEESCEEECCTTC-----------CBHHHHHHHHHCCEECSSCCCEETTTTEECCCEEEEEEEEBCSEEE
T ss_pred CCCCEECCCCCCHHHHCCCHHHH-----------HHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCEE
T ss_conf 99985178656666613201246-----------6899999986384221477876886688565789987014971139
Q ss_pred EEEEEECCCCC--CCCCCCEEECCCCCCCCCCCCCCC----------CCCCEEEEEEEEEEEC--CCCEEEEEEEECCCC
Q ss_conf 99984068876--433333033047420156453578----------9996089999999857--998089999823899
Q 000686 1222 SVIDWQRGDES--SEDISTTLSALSNELDLSKLFQGY----------LPDYTYFVVSMVCFCK--DRQHSVCFLYDDQHD 1287 (1351)
Q Consensus 1222 IhLkRF~~~~s--~~dIsktl~~i~~pLDLs~~y~g~----------d~~~~Y~L~AVV~H~g--eGGHYvAyvR~~~~~ 1287 (1351)
|||+||..... ..++ .+.+.++..|||+++.... .+...|+|+|||+|.| ++|||+||+|. .+
T Consensus 365 i~LkRF~~~~~~~~~K~-~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~vr~--~~ 441 (476)
T 3mhs_A 365 LQLKRFEHLLNGSNRKL-DDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHYIAFCKI--SG 441 (476)
T ss_dssp EEECCEEECTTSCEEEC-CCCCBCCSEEECGGGBSCCBCCC--CCCBCCCEEEEEEEEEEEEECSSSEEEEEEEEC--TT
T ss_pred EEEEECCCCCCCCEEEC-CEEECCCCEEECHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEEEEEC--CC
T ss_conf 98440215489971789-8787389700034323753234322346789973899999996899988754999988--98
Q ss_pred CCEEEEECCEEEECCCHHHHHHCCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 97899639904481760444202576520000012426899985389
Q 000686 1288 EHYVQHSDSNVEAYSEVNILATDDNHSETLDMMISFQRLIGLKQDHD 1334 (1351)
Q Consensus 1288 g~W~~FDDs~Vt~Vsswe~Vl~k~~~s~~~p~~l~~QpylLFYq~~~ 1334 (1351)
++||.|||+.|+.|+ ++.|+. .+||+|||++.+
T Consensus 442 ~~W~~fnD~~V~~v~-~~~v~~-------------~~aYiLfY~r~~ 474 (476)
T 3mhs_A 442 GQWFKFNDSMVSSIS-QEEVLK-------------EQAYLLFYTIRQ 474 (476)
T ss_dssp SCEEEEETTEEEEEC-HHHHTT-------------SCEEEEEEEEEE
T ss_pred CCEEEEECCCEEECC-HHHHCC-------------CCCEEEEEEEEC
T ss_conf 918999498158999-899566-------------986799999843
No 9
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=1.00 E-value=1 Score=392.42 Aligned_cols=295 Identities=12% Similarity=0.121 Sum_probs=223.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHC
Q ss_conf 5567654569987088999999219588999996389866668998518999999999806-899769299999998530
Q 000686 1003 NVLGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKHDGNPCIVCAFFDICAAKN-RGEAVDPTELRIALSTYY 1081 (1351)
Q Consensus 1003 ~~~~tGL~NlgGTCYLNSILQsL~hlp~FRe~LLs~~~~~h~~~~d~cI~caLq~LF~s~~-~~~~vsP~~Lr~aL~~~~ 1081 (1351)
..+.+||.|+||||||||+||||+|+|+||++++..... ......+++++|+.+|..+. ...++.|..|...++.
T Consensus 172 ~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~--~~~~~~~~~~~l~~lf~~l~~~~~~~~~~~l~~~~~~-- 247 (522)
T 2f1z_A 172 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE--GDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGW-- 247 (522)
T ss_dssp TTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCC--SSCTTTCHHHHHHHHHHHHHHCSSCBCCTTHHHHTCC--
T ss_pred CCCCCCEECCCCCHHHHHHHHHHHCCHHHHHHHHHCCCC--CCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCC--
T ss_conf 678544113863188889999986129999999606656--7765652899999999998637985576788864187--
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCC-C
Q ss_conf 178553133446589999999999999850389999985210012445787640101216799626641579985563-2
Q 000686 1082 CNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRSGY-Q 1160 (1351)
Q Consensus 1082 p~~~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~sd~~sE~~~~~~~~c~~~~siVh~LFgG~l~s~i~C~~Cg~~S~~-~ 1160 (1351)
+.|..++||||||||.+||+.||+++.... ..++|+++|+|++.++++|..|++.|.+ +
T Consensus 248 ---~~~~~~~QqDa~Efl~~LLd~L~~~l~~~~-----------------~~s~i~~lF~G~~~s~i~C~~C~~~s~~~e 307 (522)
T 2f1z_A 248 ---ETLDSFMQHDVQELCRVLLDNVENKMKGTC-----------------VEGTIPKLFRGKMVSYIQCKEVDYRSDRRE 307 (522)
T ss_dssp ---CTTTSSTTSCHHHHHHHHHHHHHHHHTTST-----------------TTTHHHHHHCEEEEEEECCSSSCCCCCEEE
T ss_pred ---CCCCCCCCCCHHHHHHHHHHHHHHHCCCCC-----------------CCCCHHHHEEEEEEEEEECCCCCCEEEEEE
T ss_conf ---657876264699999999999986415886-----------------566021313379999887278995553663
Q ss_pred CCCEEEEECCCCHHHHHCCCCCCCCHHHHHHHHC----C--CCCCCC-CCCCCC-EEEEEEECCCCEEEEEEEEECCCCC
Q ss_conf 2420110026200000000023438999998716----8--982002-699842-0898870379649999984068876
Q 000686 1161 KCTYLSFGISANNLRSLKNEHMDMSSKKVLELMG----L--GEQMTC-GCGQLN-SIYHSLWRLPHVFVSVIDWQRGDES 1232 (1351)
Q Consensus 1161 ~F~dLsl~I~a~slr~~k~~~~~~SFeelLk~~~----~--dd~~~C-~Cgk~~-~k~~~IsrlP~VLtIhLkRF~~~~s 1232 (1351)
+|.+++++|+.. .++.++|+.+. + ++.|.| .|+... .++..|.++|+||+|||+||.....
T Consensus 308 ~f~~LsL~i~~~-----------~~l~~~L~~~~~~E~l~~~n~~~C~~c~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~ 376 (522)
T 2f1z_A 308 DYYDIQLSIKGK-----------KNIFESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQ 376 (522)
T ss_dssp EESCEEECCTTC-----------CBHHHHHHHHTCEEEECTTSCBCCGGGCSBCEEEEEEESCCCSEEEEEECCEEECSS
T ss_pred EEEEEEEEECCC-----------CCCHHHHHHHHCEEECCCCCEEECCCCCCCCEEEEEEEECCCCEEEEEEEEEEECCC
T ss_conf 207898884786-----------440679987405022277620404767765367999934199638999874788166
Q ss_pred ---CCCCCCEEECCCCCCCCCCCCCCCC--CCCEEEEEEEEEEEC--CCCEEEEEEEECCCCCCEEEEECCEEEECCCHH
Q ss_conf ---4333330330474201564535789--996089999999857--998089999823899978996399044817604
Q 000686 1233 ---SEDISTTLSALSNELDLSKLFQGYL--PDYTYFVVSMVCFCK--DRQHSVCFLYDDQHDEHYVQHSDSNVEAYSEVN 1305 (1351)
Q Consensus 1233 ---~~dIsktl~~i~~pLDLs~~y~g~d--~~~~Y~L~AVV~H~g--eGGHYvAyvR~~~~~g~W~~FDDs~Vt~Vsswe 1305 (1351)
..++ ...+.++..|||+++....+ ....|+|+|||+|.| ++|||+||+|+. ..++||.|||+.|+.|+ ++
T Consensus 377 ~~~~~Ki-~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~-~~~~W~~fnD~~V~~v~-~~ 453 (522)
T 2f1z_A 377 TDQNIKI-NDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPK-GDGKWCKFDDDVVSRCT-KE 453 (522)
T ss_dssp SSCEEEC-CCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEECSSSCSEEEEEECTT-SSSCCEEEETTEEEECC-HH
T ss_pred CCCCEEC-CCEEECCCEECCHHHHCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEECC-CCCCEEEEECCEEEECC-HH
T ss_conf 7852676-827967881344354054468998379999999964569986689999438-99989999783248998-99
Q ss_pred HHHHCCCCCCCC--CCCCCCCEEEEEEECCCC
Q ss_conf 442025765200--000124268999853899
Q 000686 1306 ILATDDNHSETL--DMMISFQRLIGLKQDHDG 1335 (1351)
Q Consensus 1306 ~Vl~k~~~s~~~--p~~l~~QpylLFYq~~~~ 1335 (1351)
.|+..+-+..-. ......+||+|||++.+.
T Consensus 454 ~v~~~~~Gg~~~~~~~~~~~~aYiLfY~r~~~ 485 (522)
T 2f1z_A 454 EAIEHNYGGHDDDLSVRHCTNAYMLVYIRESK 485 (522)
T ss_dssp HHSTTSSCCC--------CEEEEEEEEEETTS
T ss_pred HHHHHHCCCCCCCCCCCCCCCEEEEEEEECCC
T ss_conf 99886338875433457689349999998882
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=382.80 Aligned_cols=288 Identities=15% Similarity=0.159 Sum_probs=219.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCC---CCCCCCCHHHHHHHHHHHHHC-----------------
Q ss_conf 567654569987088999999219588999996389866---668998518999999999806-----------------
Q 000686 1004 VLGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEV---QKHDGNPCIVCAFFDICAAKN----------------- 1063 (1351)
Q Consensus 1004 ~~~tGL~NlgGTCYLNSILQsL~hlp~FRe~LLs~~~~~---h~~~~d~cI~caLq~LF~s~~----------------- 1063 (1351)
.+.+||.|+|||||||||||||+|+|+||++|+...... .......++.|+|+.+|..+.
T Consensus 342 ~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~~~~~ 421 (854)
T 3ihp_A 342 PGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGERV 421 (854)
T ss_dssp TTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC--------------
T ss_pred CCCCCEEECCCCEEHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 88655176677620337999985729999999854344302566785411889999999987456645444211222233
Q ss_pred -----CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -----899769299999998530178553133446589999999999999850389999985210012445787640101
Q 000686 1064 -----RGEAVDPTELRIALSTYYCNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHR 1138 (1351)
Q Consensus 1064 -----~~~~vsP~~Lr~aL~~~~p~~~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~sd~~sE~~~~~~~~c~~~~siVh~ 1138 (1351)
...+++|..|+.+++... +.|..++||||+|||.+||+.||+++.. .+++++
T Consensus 422 ~~~~~~~~~isP~~f~~~l~~~~---~~F~~~~QQDA~EFl~~LLd~L~~el~~--------------------~s~i~~ 478 (854)
T 3ihp_A 422 PEQKEVQDGIAPRMFKALIGKGH---PEFSTNRQQDAQEFFLHLINMVERNCRS--------------------SENPNE 478 (854)
T ss_dssp -------CCBCCHHHHHHHTTTC---TTTTSSSCCBHHHHHHHHHHHHHHTCTT--------------------SCCGGG
T ss_pred CCCCCCCCCCCHHHHHHHHHHHC---CCCCCCCCCCHHHHHHHHHHHHHHHHCC--------------------CCCCHH
T ss_conf 33346777548199999986403---3112144337899999999999987365--------------------688222
Q ss_pred CEEEEEEEEEECCCCCCCCCC-CCCCEEEEECCCCHHHHHC---------------------CCCCCCCHHHHHHHHCCC
Q ss_conf 216799626641579985563-2242011002620000000---------------------002343899999871689
Q 000686 1139 IFGMDIFESIECINCHMRSGY-QKCTYLSFGISANNLRSLK---------------------NEHMDMSSKKVLELMGLG 1196 (1351)
Q Consensus 1139 LFgG~l~s~i~C~~Cg~~S~~-~~F~dLsl~I~a~slr~~k---------------------~~~~~~SFeelLk~~~~d 1196 (1351)
+|+|.+.++++|..|++++.+ .+|.+++++|+........ ......++.++|+.+...
T Consensus 479 lF~G~l~s~i~C~~C~~vs~t~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~sL~dcL~~f~~~ 558 (854)
T 3ihp_A 479 VFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMALPELVRAQVPFSSCLEAYGAP 558 (854)
T ss_dssp GTCEEEEEEEEETTTTEEEEEEEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHHTTCCCCCCCCEECCHHHHHHHHHSC
T ss_pred HCCCEEEEEEEECCCCCEEEEEEECEEEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
T ss_conf 10735889999648997767763064788457863234421000100111100023554432456777799999985584
Q ss_pred C---CCCC-CCCCCCE--EEEEEECCCCEEEEEEEEECCCCC--CCCCCCEEECCCCCCCCCCCCC-CC-----------
Q ss_conf 8---2002-6998420--898870379649999984068876--4333330330474201564535-78-----------
Q 000686 1197 E---QMTC-GCGQLNS--IYHSLWRLPHVFVSVIDWQRGDES--SEDISTTLSALSNELDLSKLFQ-GY----------- 1256 (1351)
Q Consensus 1197 d---~~~C-~Cgk~~~--k~~~IsrlP~VLtIhLkRF~~~~s--~~dIsktl~~i~~pLDLs~~y~-g~----------- 1256 (1351)
+ .|.| +|+.++. ++..|.++|+||+|||+||..... ..++ .+.+.|+..|||++|.. +.
T Consensus 559 E~Le~y~C~~C~~k~~a~K~~~i~~lP~vLiihLkRF~~d~~~~~~Ki-~~~V~FP~~LDl~~y~~~~~q~~E~~lp~~~ 637 (854)
T 3ihp_A 559 EQVDDFWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKL-DVSIEMPEELDISQLRGTGLQPGEEELPDIA 637 (854)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEESSCCSEEEEEECCEEECGGGCEEEC-CEECCCCSEEECGGGBCCCSCTTCCBCCCC-
T ss_pred EEEEEEECCCCCCCCEEEEEEEEEECCCEEEEEEEHHEECCCCCEEEC-CEEEECCCCEEHHHHCCCCCCCCCEECCCCC
T ss_conf 075331035568730053888821289667999453135677732778-8698568807068850678898721213356
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000686 1257 -------------------------------------------------------------------------------- 1256 (1351)
Q Consensus 1257 -------------------------------------------------------------------------------- 1256 (1351)
T Consensus 638 ~~~~~~~~~~~~~~d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmdd~di~~p~~~~~~~~~~s~~~~~~ 717 (854)
T 3ihp_A 638 PPLVTPDEPKAPMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSGPGSTSAAAD 717 (854)
T ss_dssp ---------------CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTTSCGGGSCCCCC-------------
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 65556554456676889999998648977888888863179856777677764167633246555666666666555568
Q ss_pred --------------------------------------------------------------------------CCCCEE
Q ss_conf --------------------------------------------------------------------------999608
Q 000686 1257 --------------------------------------------------------------------------LPDYTY 1262 (1351)
Q Consensus 1257 --------------------------------------------------------------------------d~~~~Y 1262 (1351)
+....|
T Consensus 718 ~~~~e~i~~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 797 (854)
T 3ihp_A 718 PPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLDAEAAMDISEGRSAADSISESVPVGPKVRDGPGKY 797 (854)
T ss_dssp -CCHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC------------------CCCCCCCSEE
T ss_pred CCCHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 89989999999828878899999986057387777764068443343210012222334565434455557888898459
Q ss_pred EEEEEEEEEC---CCCEEEEEEEECCCCCCEEEEECCEEEECCCHHHHHHCCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 9999999857---99808999982389997899639904481760444202576520000012426899985389
Q 000686 1263 FVVSMVCFCK---DRQHSVCFLYDDQHDEHYVQHSDSNVEAYSEVNILATDDNHSETLDMMISFQRLIGLKQDHD 1334 (1351)
Q Consensus 1263 ~L~AVV~H~g---eGGHYvAyvR~~~~~g~W~~FDDs~Vt~Vsswe~Vl~k~~~s~~~p~~l~~QpylLFYq~~~ 1334 (1351)
+|+|||+|.| ++|||+||+| ..++||.|||+.|+.+.. .....+|||||++.+
T Consensus 798 ~L~avi~H~G~~~~~GHY~~~~~---~~~~W~~~nD~~V~~~~~----------------~~~~~aYilfY~R~~ 853 (854)
T 3ihp_A 798 QLFAFISHMGTSTMCGHYVCHIK---KEGRWVIYNDQKVCASEK----------------PPKDLGYIYFYQRVA 853 (854)
T ss_dssp EEEEEEEEESSCSSCCEEEEEEE---ETTEEEEEETTEEEECSS----------------CCTTSCSEEEEEECC
T ss_pred EEEEEEEEECCCCCCCCEEEEEE---ECCEEEEEECCEEEECCC----------------CCCCCCEEEEEEECC
T ss_conf 99999996448999728299997---599899997771587146----------------677851699999568
Done!