Query 000688
Match_columns 1350
No_of_seqs 427 out of 1103
Neff 7.2
Searched_HMMs 46136
Date Mon Apr 1 21:53:42 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000688.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000688hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03076 ARF guanine nucleotid 100.0 1E-269 2E-274 2611.2 135.5 1345 1-1350 422-1778(1780)
2 KOG0929 Guanine nucleotide exc 100.0 8E-216 2E-220 2013.5 78.5 1172 1-1344 341-1513(1514)
3 KOG0928 Pattern-formation prot 100.0 2E-113 5E-118 1058.5 81.2 959 2-1091 366-1364(1386)
4 COG5307 SEC7 domain proteins [ 100.0 8.2E-87 1.8E-91 839.4 35.0 927 1-1080 66-1022(1024)
5 KOG0930 Guanine nucleotide exc 100.0 3.3E-54 7.3E-59 454.0 14.3 191 190-380 60-250 (395)
6 cd00171 Sec7 Sec7 domain; Doma 100.0 5.2E-52 1.1E-56 443.2 20.4 183 191-373 1-185 (185)
7 PF01369 Sec7: Sec7 domain; I 100.0 1.4E-51 3E-56 443.4 19.6 185 189-373 2-190 (190)
8 smart00222 Sec7 Sec7 domain. D 100.0 3.2E-51 6.9E-56 438.8 20.5 183 191-373 2-187 (187)
9 KOG0931 Predicted guanine nucl 100.0 1.2E-50 2.5E-55 450.9 12.4 194 192-385 198-397 (627)
10 KOG1848 Uncharacterized conser 100.0 8.2E-44 1.8E-48 438.6 41.5 628 440-1196 518-1233(1610)
11 KOG1846 Uncharacterized conser 100.0 3.5E-39 7.5E-44 377.7 53.5 958 239-1257 347-1594(1777)
12 KOG0932 Guanine nucleotide exc 100.0 3.3E-29 7.2E-34 285.9 12.8 154 223-376 307-460 (774)
13 PF09324 DUF1981: Domain of un 99.9 1.7E-22 3.6E-27 188.7 5.7 86 740-825 1-86 (86)
14 PF12783 Sec7_N: Guanine nucle 99.7 5.5E-18 1.2E-22 180.0 9.4 82 1-83 87-168 (168)
15 PLN03076 ARF guanine nucleotid 96.0 2 4.4E-05 60.7 29.2 144 911-1079 1130-1277(1780)
16 KOG0929 Guanine nucleotide exc 95.9 0.32 7E-06 65.9 19.6 150 912-1081 1065-1226(1514)
17 KOG2023 Nuclear transport rece 94.8 2.5 5.4E-05 52.7 20.9 314 704-1081 125-527 (885)
18 KOG2171 Karyopherin (importin) 93.8 13 0.00029 49.5 25.5 136 915-1077 115-253 (1075)
19 PF01602 Adaptin_N: Adaptin N 91.0 37 0.00081 42.7 24.7 293 659-1060 188-485 (526)
20 PF01602 Adaptin_N: Adaptin N 90.4 58 0.0013 41.0 31.6 126 683-825 54-179 (526)
21 PF14500 MMS19_N: Dos2-interac 83.0 51 0.0011 38.0 17.2 155 770-967 95-257 (262)
22 KOG1241 Karyopherin (importin) 80.4 71 0.0015 41.2 17.9 257 720-1053 10-283 (859)
23 PF11864 DUF3384: Domain of un 78.0 29 0.00063 43.3 14.2 142 653-807 207-353 (464)
24 PF12348 CLASP_N: CLASP N term 77.3 1.2E+02 0.0025 33.7 17.6 155 756-955 7-171 (228)
25 KOG1824 TATA-binding protein-i 77.1 2.7E+02 0.0058 37.3 26.9 270 768-1077 16-304 (1233)
26 PF12348 CLASP_N: CLASP N term 75.2 1.3E+02 0.0028 33.3 17.3 178 683-874 24-207 (228)
27 PF11640 TAN: Telomere-length 73.4 27 0.0006 36.7 10.5 137 924-1070 10-154 (155)
28 PF08767 CRM1_C: CRM1 C termin 72.6 1.4E+02 0.003 35.4 17.3 111 930-1062 83-198 (319)
29 KOG1848 Uncharacterized conser 72.6 4E+02 0.0087 37.2 34.8 252 681-962 857-1149(1610)
30 PF12783 Sec7_N: Guanine nucle 71.2 45 0.00097 35.4 11.7 121 661-786 8-146 (168)
31 PF12719 Cnd3: Nuclear condens 69.9 37 0.0008 39.7 11.6 65 931-1018 77-144 (298)
32 PF12717 Cnd1: non-SMC mitotic 69.4 46 0.001 35.8 11.4 112 724-850 1-112 (178)
33 PF10508 Proteasom_PSMB: Prote 66.1 3.2E+02 0.007 34.6 19.6 69 714-787 122-190 (503)
34 PTZ00429 beta-adaptin; Provisi 64.2 3.4E+02 0.0074 36.1 19.6 49 915-963 137-185 (746)
35 cd00020 ARM Armadillo/beta-cat 61.7 30 0.00065 33.4 7.6 107 715-825 11-118 (120)
36 PF02985 HEAT: HEAT repeat; I 61.7 13 0.00029 27.7 3.8 28 920-947 2-29 (31)
37 KOG2956 CLIP-associating prote 60.8 4.1E+02 0.0088 32.9 18.1 160 752-955 326-486 (516)
38 PF03378 CAS_CSE1: CAS/CSE pro 57.8 4.6E+02 0.01 32.6 27.6 270 709-1046 69-356 (435)
39 PF04510 DUF577: Family of unk 50.9 2E+02 0.0044 30.9 11.6 153 842-1059 6-165 (174)
40 PF12719 Cnd3: Nuclear condens 50.0 1.7E+02 0.0037 34.1 12.6 105 710-823 26-139 (298)
41 PF08767 CRM1_C: CRM1 C termin 49.3 2.7E+02 0.0059 33.0 14.1 128 777-930 92-226 (319)
42 PF12755 Vac14_Fab1_bd: Vacuol 47.0 1.2E+02 0.0026 29.4 8.7 73 754-828 25-97 (97)
43 KOG2956 CLIP-associating prote 47.0 2.6E+02 0.0057 34.5 13.1 114 919-1059 288-401 (516)
44 cd00020 ARM Armadillo/beta-cat 46.0 90 0.0019 30.0 8.1 109 920-1056 9-118 (120)
45 PF09324 DUF1981: Domain of un 45.7 1.1E+02 0.0024 28.8 8.1 54 1002-1055 32-85 (86)
46 PF12717 Cnd1: non-SMC mitotic 45.0 1.1E+02 0.0024 32.8 9.2 92 932-1059 2-93 (178)
47 cd03568 VHS_STAM VHS domain fa 44.9 1.1E+02 0.0023 32.0 8.6 80 721-823 47-129 (144)
48 KOG2023 Nuclear transport rece 43.6 3.1E+02 0.0067 35.3 13.2 154 663-827 128-285 (885)
49 KOG2171 Karyopherin (importin) 43.3 1.1E+03 0.023 32.6 42.7 352 720-1185 46-421 (1075)
50 KOG1248 Uncharacterized conser 39.5 1.2E+03 0.027 32.2 36.5 423 757-1341 97-542 (1176)
51 cd03567 VHS_GGA VHS domain fam 36.9 1.7E+02 0.0036 30.4 8.5 58 721-782 48-112 (139)
52 KOG1967 DNA repair/transcripti 35.4 3E+02 0.0066 36.7 11.9 154 773-963 143-300 (1030)
53 cd03569 VHS_Hrs_Vps27p VHS dom 34.9 2E+02 0.0044 29.9 8.8 58 721-782 51-110 (142)
54 PF10508 Proteasom_PSMB: Prote 33.0 1.1E+03 0.024 29.8 23.8 226 766-1056 86-317 (503)
55 PF12755 Vac14_Fab1_bd: Vacuol 30.7 4.7E+02 0.01 25.3 9.9 94 934-1057 2-95 (97)
56 KOG4535 HEAT and armadillo rep 29.6 1.2E+03 0.026 29.1 16.9 58 1014-1071 280-337 (728)
57 PF10521 DUF2454: Protein of u 28.1 6.9E+02 0.015 29.0 12.8 132 912-1062 113-257 (282)
58 PF13646 HEAT_2: HEAT repeats; 28.1 1.3E+02 0.0028 27.5 5.6 71 721-816 10-80 (88)
59 PF08427 DUF1741: Domain of un 27.6 9.5E+02 0.021 27.3 13.4 104 911-1024 58-172 (237)
60 PF08161 NUC173: NUC173 domain 27.6 8.6E+02 0.019 26.8 12.7 163 1145-1341 18-195 (198)
61 PRK09687 putative lyase; Provi 26.5 9.7E+02 0.021 27.8 13.5 92 716-827 28-120 (280)
62 PF02985 HEAT: HEAT repeat; I 26.2 1.1E+02 0.0024 22.7 3.8 27 713-739 2-28 (31)
63 KOG1824 TATA-binding protein-i 25.2 1.9E+03 0.041 30.0 44.1 127 923-1080 574-702 (1233)
64 PLN03205 ATR interacting prote 25.2 2E+02 0.0043 34.5 7.3 85 654-741 317-402 (652)
65 PF05004 IFRD: Interferon-rela 24.2 6.4E+02 0.014 29.8 11.6 77 1002-1078 57-136 (309)
66 COG5218 YCG1 Chromosome conden 23.6 3.6E+02 0.0078 34.2 9.2 93 931-1053 580-675 (885)
67 PF13513 HEAT_EZ: HEAT-like re 23.1 99 0.0021 26.0 3.5 52 1005-1056 4-55 (55)
68 KOG1993 Nuclear transport rece 23.1 9.9E+02 0.021 31.7 13.1 139 918-1085 526-670 (978)
69 cd03565 VHS_Tom1 VHS domain fa 23.0 8.5E+02 0.019 25.2 11.7 109 687-824 19-135 (141)
70 smart00288 VHS Domain present 23.0 3.5E+02 0.0076 27.7 8.0 58 722-783 48-108 (133)
71 KOG1766 Enhancer of rudimentar 22.7 1.6E+02 0.0035 28.2 4.8 31 994-1024 13-44 (104)
72 PF12830 Nipped-B_C: Sister ch 22.0 1E+03 0.022 25.7 12.3 82 715-805 12-97 (187)
No 1
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=100.00 E-value=1.1e-269 Score=2611.20 Aligned_cols=1345 Identities=57% Similarity=0.936 Sum_probs=1165.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHcCchhHHHHhHccCCCCCCh
Q 000688 1 MAVFQLQCSIFMSLLSKYRSGLKAEIGIFFPMLVLRVLENVLQPSFVQKMTVLNLLEKISQDSQIIVDVFVNYDCDVDSP 80 (1350)
Q Consensus 1 ~~vf~~s~~If~~l~~~~r~~lK~ei~vf~~~i~l~ile~~~~~~~~qk~~~L~~l~~l~~~p~~~vely~NYDCd~~~~ 80 (1350)
|+||++||+|||+|+.+||.|||.||||||++||+|+||++++++|+||+++|++|.+||+||+++||+|+|||||++++
T Consensus 422 ~~vf~lsl~If~~L~~~~R~~LK~eievF~~~I~l~ile~~~~~s~~qK~~~L~~L~~lc~dp~~lveiyvNYDCD~~~~ 501 (1780)
T PLN03076 422 MIIFQLSCSIFISLVSRFRAGLKAEIGVFFPMIVLRVLENVAQPNFQQKMIVLRFLDKLCVDSQILVDIFINYDCDVNSS 501 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCccHHHHHHhccCCCCCCc
Confidence 58999999999999999999999999999999999999987678899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhccCCCCCCCCCCCchhhHHHhHhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCC-CCCCCCCC--
Q 000688 81 NIFERIVNGLLKTALGPPPGSTTSLSPAQDIAFRYESVKCLVSIIRSMGTWMDQQLRIGETYLPKGSET-DSSIDNNS-- 157 (1350)
Q Consensus 81 Nife~lv~~L~k~a~~~~~~~~~~~~~~~e~~l~~~~l~~l~~il~sl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-- 157 (1350)
||||++|+.|+|+|+|.+++.+++..|+||+.||++||+||++||+||++|+++++..++.......+. ..+..+..
T Consensus 502 NifE~lv~~Lsk~a~~~~~~~~~~~~~~qe~~lk~~aLecLv~il~sl~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (1780)
T PLN03076 502 NIFERMVNGLLKTAQGVPPGVETTLLPPQEAAMKLEAMKCLVAILRSMGDWMNKQLRLPDPASLKKLDAVENNLEPGSLP 581 (1780)
T ss_pred hHHHHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccchhhcccccccccc
Confidence 999999999999999988777777788999999999999999999999999988754433221111111 00000000
Q ss_pred --CCCCCCCCCCCcccccCCCCCCCChHHHHHHHHhHHHHHHHHHHhccCchhhHHHHHhcCCCCCCHHHHHHHHhcCCC
Q 000688 158 --IPNGEDGSVPDYEFHAEVNPEFSDAATLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTG 235 (1350)
Q Consensus 158 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~k~~K~~~~~~~~~Fn~~p~~gi~~l~~~~~i~~~p~~ia~fl~~~~~ 235 (1350)
..++.+. ....+..++.+...++++++|++|++|..+++|+.+||+|||+||+||+++|+++++|++||+||++++|
T Consensus 582 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~k~~K~~l~~g~~~FN~~Pk~Gi~~L~~~~~i~~~p~~iA~FL~~~~~ 660 (1780)
T PLN03076 582 VANGNGDEN-GEGSDSHSELSSETSDAATIEQRRAYKLELQEGISLFNRKPKKGIEFLINANKVGESPEEIAAFLKDASG 660 (1780)
T ss_pred ccccccccc-cccccccccccccCCcHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHcCCCCCCHHHHHHHHHhCCC
Confidence 0001110 0111122223334577889999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHhhhcccchhHHHHHHHHHhcCCCCCCCchHHHHHHhccCCCCCchHHHHHHHHHHHHHHhhhCCCCCCCccHH
Q 000688 236 LNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSADTA 315 (1350)
Q Consensus 236 l~k~~igeylg~~~~~~~~vl~~y~~~~df~~~~~~~alR~~l~~f~LpgE~q~idri~e~Fa~~y~~~np~~f~~~d~~ 315 (1350)
|||++||||||+++++|.+||++|++.|||+|++||+|||.||++||||||+|+||||||+||+|||+|||+.|.|+|+|
T Consensus 661 Ldk~~iGeyLg~~~~~~~~vl~~yv~~fdF~g~~~d~ALR~fL~~FrLPGEaQ~IdRime~Fa~rY~~~Np~~f~~~D~~ 740 (1780)
T PLN03076 661 LNKTLIGDYLGEREDLSLKVMHAYVDSFDFQGMEFDEAIRAFLQGFRLPGEAQKIDRIMEKFAERYCKCNPKAFSSADTA 740 (1780)
T ss_pred CCHHHHHHHHcCCChHHHHHHHHHHHhCCcCCCCHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhCCCcCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhcCCCCCHHHHHHhhcCCCCCCCCCHHHHHHHHHHHhhCcccccCCCCCchhhhhhhhhhhcc
Q 000688 316 YVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSSAPESKQANSLNKLLG 395 (1350)
Q Consensus 316 y~la~siimLntdlhn~~~k~kmt~~~Fi~n~~g~~~~~d~~~~~L~~iY~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~ 395 (1350)
|+||||+||||||+|||++|+|||+++|+||+||+|+|+|||+|||++|||+|+++||+|++|+.++.++++.+.+++.|
T Consensus 741 yvLaysiIMLnTDlHnp~vk~kMt~~~Fi~n~rgin~g~dlp~e~L~~iY~~I~~~ei~~~~~~~~~~~~~~~~~~~~~g 820 (1780)
T PLN03076 741 YVLAYSVIMLNTDAHNPMVKNKMSADDFIRNNRGIDDGKDLPEEFMRSLYERISKNEIKMKEDDLVPQQKQSANSNRILG 820 (1780)
T ss_pred HHHHHHHHHHhHHhcCCccCCCCCHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHhCcccCcccccccccccccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999887666555555566778
Q ss_pred cccchhhhhcchHHHHHhhhhHHHHHHHHHHHhcccCCCCCceEeccchhhHHHHHHHhHHHHHHHHHhhhhcCCcHHHH
Q 000688 396 LDGILNLVIGKQTEEKALGANGLLIRRIQEQFKSKSGKSESLYHAVTDPGILRFMVEVCWGPMLAAFSVTLDQSDDKLAT 475 (1350)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~Mfe~~W~~ilaals~~l~~s~D~~~~ 475 (1350)
++++++.+.|++.+++|+++++.+++.+++.++++..++++.|+.++|.+|+|+||+++|+|++||||++|++++|++++
T Consensus 821 ~~~~~~~~~r~~~~e~~~~~s~~l~~~~~~~~k~~~~~~~~~f~~a~~~~~~~~mfe~~W~p~laalS~~~~~s~d~~~~ 900 (1780)
T PLN03076 821 LDSILNIVIRKRGEDSYMETSDDLIKHMQEQFKEKARKSESVYYAATDVVILRFMVEVCWAPMLAAFSVPLDQSDDEVVT 900 (1780)
T ss_pred hHHHHhHhhHHHHHHHHHHhHHHHHHHHHHHHHHhhccccCceeecchHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 88888888898888999999999999999988877666778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHhccCCCccccchhhHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHH
Q 000688 476 NQCLQGFRHAVHVTAVMGMQTQRDAFVTSVAKFTYLHCAADMKQKNVDAVKAIISIAIEDGNHLQEAWEHILTCLSRIEH 555 (1350)
Q Consensus 476 ~~~L~g~~~~i~ia~~f~l~~~rdafl~sL~kft~L~~~~~~~~Knv~air~Ll~la~~~G~~L~~sW~~IL~~is~le~ 555 (1350)
+.||+||+.||+|||.|||+++||+||++|||||+|+++.+|++||++|+|+||+||+++||+|++||++||+|||||||
T Consensus 901 ~~cL~G~~~~i~ia~~f~l~~~rdafv~~L~kfT~L~~~~emk~Knv~Aik~ll~ia~~~Gn~L~~sW~~IL~cISqLer 980 (1780)
T PLN03076 901 FQCLEGFRHAIHVTAVMSMKTHRDAFVTSLAKFTSLHSPADIKQKNIDAIKAIVSIADEDGNYLQEAWEHILTCVSRFEH 980 (1780)
T ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHcCCCChhhhhHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCccccccccchhhh-hhcccCCCCCccccCCCCCCcchhhhcCCccccCCcCCCCCCCCCHHHHHHHhhh
Q 000688 556 LQLLGEGAPTDASFLTVSNVEADE-KTQKSMGFPSLKKKGTLQNPSVMAVVRGGSYDSTTVGVNSPGLVTPEQINHFIAN 634 (1350)
Q Consensus 556 lqli~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ss~~~~~~~~~~t~~ei~~~~~~ 634 (1350)
||||+.|++||+.+...|..+++. +..++...|...++++++.+.......++++++...++..+..++++++.....+
T Consensus 981 l~Li~~gv~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 1060 (1780)
T PLN03076 981 LHLLGEGAPPDATFFAAPQNESDKSKQAKSPILPVLKRKGPGKLQYAAAAVRRGSYDSAGVGGKASGVVTSEQMNNLVSN 1060 (1780)
T ss_pred HHHhhcCCCcchhhhcccccccccccccccccccccccccccccchhhhhhcccccccccccccccccCCHHHHHHHHhh
Confidence 999999999887666544333322 1223334555544444433333333456777765555555667888998887777
Q ss_pred hhhhhhhhhcchhHHHHhcccCChHHHHHHHHHHHHhchhhhcCCCCCCcchHHHHHHHHhhcccccccchhhhHHHHHH
Q 000688 635 LNLLDQIGNFELNHVFAHSQRLNSEAIVAFVKALCKVSISELQSPTDPRVFSLTKLVEIAHYNMNRIRLVWSRMWNVLSD 714 (1350)
Q Consensus 635 ~~~~~~i~~~~id~lF~~S~~L~~eai~~fv~AL~~vS~eel~~~~~pr~F~L~kLveva~~Nm~Ri~~~W~~iW~~l~~ 714 (1350)
++++++|+++.+|+||++|++|+++||++||+|||+||++|+++++.||+|+|+||||||+|||+|||++|+++|+++++
T Consensus 1061 l~~l~~i~~~~idkIF~~S~~L~~eai~~fv~AL~~vS~eEl~~~~~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~ 1140 (1780)
T PLN03076 1061 LNMLEQVGSFEMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSD 1140 (1780)
T ss_pred hhhhhhhhhhHHHHHHHhcccCCHHHHHHHHHHHHHhhHHHHccCCCCchhHHHHHHHHHHhcccchheehHhHHHHHHH
Confidence 77788899999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred HHHHhcCCccHhHHHHHHHHHHHHHHHhcchhhhhhhhhhhhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccC
Q 000688 715 FFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKS 794 (1350)
Q Consensus 715 ~f~~v~~~~n~~v~~~AidsLrqLs~kfLe~eEL~~f~fQ~~fL~Pf~~im~~~~~~eIre~iL~cl~~~l~~~~~~I~S 794 (1350)
||+++|||+|..|++||+|+|||++|||++++||++|+||++||+||++||.++.+.+|||+|++|+.|||++++++|+|
T Consensus 1141 hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkS 1220 (1780)
T PLN03076 1141 FFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKS 1220 (1780)
T ss_pred HHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhhcCCccccccchHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHH
Q 000688 795 GWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVK 874 (1350)
Q Consensus 795 GWk~IF~il~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~~~~d~niSL~Ai~~l~~~~~~ 874 (1350)
|||+||+||+.|+.++++.+|+.||+++++|++|||+.++.+..++|.|||+||.+|++|+.++||||+||++||.|+++
T Consensus 1221 GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~ 1300 (1780)
T PLN03076 1221 GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATK 1300 (1780)
T ss_pred CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998885556999999999999999999999999999999999999
Q ss_pred hhcCCcccccCCCC----CCCCCCCCCCCCCcccCCCCcccchhhHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHcC
Q 000688 875 LADGGLVCNEKGSV----DGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHG 950 (1350)
Q Consensus 875 L~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~L~~l~~d~R~eVR~~AlqtLF~iL~~~G 950 (1350)
++++.+........ .+.+.. ..+...+...+.+.+++.++|||||++|++++.|+|+|||++||+|||+||+.||
T Consensus 1301 La~~~~~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG 1379 (1780)
T PLN03076 1301 LAEGDLGSSSRNKDKEAPPSSPQS-GKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHG 1379 (1780)
T ss_pred HHhccccccccccccccccccccc-cccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhh
Confidence 98875433211000 000000 0111112223345566788999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHhHhhhhcccCCCCCCCCCCCCC--CCCCCcccccHHHhHHHHHHHHHHHHHHHHHhHHhhHH
Q 000688 951 HLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTS--HSPLSEGSTWDSETAAIGAECLVDIFICFFDVVRSQLP 1028 (1350)
Q Consensus 951 ~~f~~~~W~~i~~~VLfPi~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~W~~eT~~~al~~l~~lf~~yf~~l~~~l~ 1028 (1350)
+.|++++|+.||++||||||+.++...+....++++++.. ...+.+.++|++|||++||+++++||++||+.+..+|+
T Consensus 1380 ~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~ 1459 (1780)
T PLN03076 1380 HLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLK 1459 (1780)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987655433222111100 11245789999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCcchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhhchhhHHHhhhccccccCCCCCCcccc
Q 000688 1029 GVVSILTGFIRSPIQGPASTGVAALLHLAGELGSRLSQDEWREILLALKETTASTLPSFVKVLRTMNDIEIPNTSQSYAD 1108 (1350)
Q Consensus 1029 ~~L~lL~~~i~~~~~~la~ig~~~l~~Ll~~~~~~f~~~~W~~i~~~~~~l~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 1108 (1350)
++|++|.+||||+|++|||+|++||++||.+||++|++++|++|+++|.++|+.|+|.|........ .|.......+
T Consensus 1460 ~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf~~T~p~~~~~~~~~~---~~~~~~~~~~ 1536 (1780)
T PLN03076 1460 KVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAANATLPDFSYVVSGEY---MPAENIQDSE 1536 (1780)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhCCchhhcccccc---cccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999754321111 0110000000
Q ss_pred ccccCCCCCCCCCcchhhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhHhhhcCCH
Q 000688 1109 MEMDSDHGSINDNIDEDNLQTAAYVVSRMKSHITLQLLSVQVAANLYKLHLRLLSTTNVKILLDIFSSIASHAHELNSEL 1188 (1350)
Q Consensus 1109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~cvlqLllIq~~~eL~~~~~~~l~~~~l~~ll~~L~~s~~fA~~fN~~~ 1188 (1350)
.+....++...+.......++....+.++||+||+||+|||++.+||++++.+||++|+.+|++||.+||+||++||+|+
T Consensus 1537 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~kc~~v~QLllI~~~~~l~~~~~~~l~~~~l~~l~~~L~~s~~fA~~fN~d~ 1616 (1780)
T PLN03076 1537 NAEAASSSTADNDAEAERSRRLYAAISDAKCRAAVQLLLIQAVMEIYNMYRPRLSAKNTLVLFDALHTVASHAHKINSDT 1616 (1780)
T ss_pred cccccccccccchhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence 00000000111111111122222234458899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHHhhcCCCCcchHHhHHHHHHHHHHHHHHHHHccccchhHHHHhh
Q 000688 1189 VLQKKLQRVCLVLELSDPPMVHFENESYQTYLNFLRDSLTGNPSASEELNIESHLVEACEMILQMYLNCTGQQKVKAVKQ 1268 (1350)
Q Consensus 1189 ~Lr~~L~k~g~~~~~~~PnLlkQE~~S~~~~l~iL~~~~~d~~~~~~~~~~~~~L~~lc~~il~~y~~~~~~~~~~~~~~ 1268 (1350)
+||++|||+|||+++++|||||||++|+++|++||||||+|+++.+.+.++|+||+++|.+||++|+++++.+|++..+.
T Consensus 1617 ~lR~~l~~~g~~~~~~~PnLLkqE~~s~~~~l~il~~~~~d~~~~~~~~~~~~~l~~~c~~il~~y~~l~~~~~~~~~~~ 1696 (1780)
T PLN03076 1617 ALRSKLQELGSMTQMQDPPLLRLENESYQICLTFLQNLILDKPPLAKEAEVESRLVELCEEVLQFYIETSTAGQDSEDSS 1696 (1780)
T ss_pred HHHHHHHHhhhcccCCCCchhhHhHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 99999999999999999999999999999999999999999998889999999999999999999999998555222233
Q ss_pred hhhhhhhccCCchhhhhhhhhhhHHHHHHHHhhcCChHHHHHHhhhHhHHHHHHHcCCCCchhHHHHHHHHHHhhhhhcc
Q 000688 1269 QRVVRWILPLGSARKEELAARTSLVVSALRVLSGLERETFKKYLSNIFPLLIDLVRSEHSSREVQLVLGTMFQSCIGPIL 1348 (1350)
Q Consensus 1269 ~~~~~~~~~~~~~~~r~i~a~~pvvv~~L~~~~~l~~~~F~~~~~~~ypll~~Li~~~~~~~evr~aL~~~f~~rvg~~~ 1348 (1350)
+..++|.+|+|++++||++||+||||++|+||++||+++|++|+|.||||+++|++|||.++|||.||+.+|++||||++
T Consensus 1697 ~~~~~~~~p~~~~~~r~i~a~~pv~v~il~~~~~l~~~~f~~~~~~~y~l~~~l~~~e~~~~e~r~~l~~~~~~rvg~~~ 1776 (1780)
T PLN03076 1697 SQQPRWLIPLGSGKRRELAARAPLVVATLQAVCGLGDSSFEKNLVRFFPLLAGLISCEHGSNEVQVALSDMLSSWVGPVL 1776 (1780)
T ss_pred cccccccccccchhHHHHHhcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhhhH
Confidence 44569999999999999999999999999999999999999999999999999999998899999999999988999998
Q ss_pred cC
Q 000688 1349 LQ 1350 (1350)
Q Consensus 1349 ~~ 1350 (1350)
++
T Consensus 1777 ~~ 1778 (1780)
T PLN03076 1777 LQ 1778 (1780)
T ss_pred hc
Confidence 63
No 2
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.2e-216 Score=2013.54 Aligned_cols=1172 Identities=48% Similarity=0.771 Sum_probs=1014.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHcCchhHHHHhHccCCCCCCh
Q 000688 1 MAVFQLQCSIFMSLLSKYRSGLKAEIGIFFPMLVLRVLENVLQPSFVQKMTVLNLLEKISQDSQIIVDVFVNYDCDVDSP 80 (1350)
Q Consensus 1 ~~vf~~s~~If~~l~~~~r~~lK~ei~vf~~~i~l~ile~~~~~~~~qk~~~L~~l~~l~~~p~~~vely~NYDCd~~~~ 80 (1350)
|+|||+||+|||.|+.+||+++|.||||||++|+++++|..++ +++||+++|..+.++|.|||.+||+|+|||||.+.+
T Consensus 341 ~~vfe~s~~If~~lls~~r~~~K~ei~vff~~i~~~ile~~t~-s~~qk~~~l~~~~~ic~d~q~~Vdi~vnydcd~~~~ 419 (1514)
T KOG0929|consen 341 PMVFELSCTIFVSLLSNFRTHLKAEIEVFFSEIFLRILENNTS-SFQQKMMVLRILTRICADPQTLVDIYVNYDCDSNSQ 419 (1514)
T ss_pred hHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhcCCC-cccchhHHHHHHhhhcCCCccccccccCCccccCCc
Confidence 6899999999999999999999999999999999999999754 999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhccCCCCCCCCCCCchhhHHHhHhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCC
Q 000688 81 NIFERIVNGLLKTALGPPPGSTTSLSPAQDIAFRYESVKCLVSIIRSMGTWMDQQLRIGETYLPKGSETDSSIDNNSIPN 160 (1350)
Q Consensus 81 Nife~lv~~L~k~a~~~~~~~~~~~~~~~e~~l~~~~l~~l~~il~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (1350)
||||++++.++|+|+|+ +++....+|.||..+|..+++||++++++|..|.+++...+....+..... .+.. +
T Consensus 420 nifer~v~~ltk~a~g~-~~s~~~~~P~~~~~~~~~s~kcL~s~l~s~s~w~~~~~~~~~~~t~~~~~~-~~~~-----~ 492 (1514)
T KOG0929|consen 420 NIFERLVNGLSKIAQGR-TGSNLELSPVQELALRLKSLKCLVSILKSMSGWNDNQLNVEGVITGKKSST-TPIE-----N 492 (1514)
T ss_pred cHHHHHHhhHHHhhcCC-CccccCCCCchhhhHhhhhhhhHHHHHHhhhhhccccccCCCcccCccccC-cchh-----h
Confidence 99999999999999994 466677889999999999999999999999999987554333222211110 0000 0
Q ss_pred CCCCCCCCcccccCCCCCCCChHHHHHHHHhHHHHHHHHHHhccCchhhHHHHHhcCCCCCCHHHHHHHHhcCCCCChhH
Q 000688 161 GEDGSVPDYEFHAEVNPEFSDAATLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETM 240 (1350)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~k~~K~~~~~~~~~Fn~~p~~gi~~l~~~~~i~~~p~~ia~fl~~~~~l~k~~ 240 (1350)
.. +++ ..+...+++++++..|.+|. +++|+.+||.+|++||+||+++|+++.+|.+||+||+.+.||||+.
T Consensus 493 ~~-----~s~---~~~~~~~~~~q~e~~k~ek~-l~~~i~~fN~kpkkgi~~l~s~~~v~~sp~eiaeFL~~t~~l~kt~ 563 (1514)
T KOG0929|consen 493 EL-----NSD---TQSNDADDPEQFEALKSEKQ-LQEGIQLFNGKPKKGISFLDSKGTVGTSPLEIAEFLIGTEGLSKTI 563 (1514)
T ss_pred hc-----cCc---cccccccChhhhhhhhhhcc-hHHHHHHhccCCccCchhhhhcCCCCCCHHHHHHHHHhccCCCHHH
Confidence 00 000 12234467889999999888 9999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccchhHHHHHHHHHhcCCCCCCCchHHHHHHhccCCCCCchHHHHHHHHHHHHHHhhhCCC-CCCCccHHHHHH
Q 000688 241 IGDYLGEREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPS-SFTSADTAYVLA 319 (1350)
Q Consensus 241 igeylg~~~~~~~~vl~~y~~~~df~~~~~~~alR~~l~~f~LpgE~q~idri~e~Fa~~y~~~np~-~f~~~d~~y~la 319 (1350)
+|+|||+++++|++|||+||+.|||++++|++|||.||++||||||||||||+|++||+|||+|||+ .|.|||+||+||
T Consensus 564 igdyLGe~d~~~~~VMhayVd~~dF~~~~~~~ALR~fL~~frLPgEaQkIDRiM~kFS~ry~~cNP~~lFssADtaYVLA 643 (1514)
T KOG0929|consen 564 LGDYLGEDDDFNKAVMHAYVDLFDFKNMSLVEALRKFLEGFRLPGEAQKIDRLMEKFSERYCKCNPGTLFSSADTAYVLA 643 (1514)
T ss_pred HHHHhcCCcchhHHHHHHHHHhhCcCCCcHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHhcCCCccCCCccchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHhhhhhhhhhhcCCCCCHHHHHHhhcCCCCCCCCCHHHHHHHHHHHhhCcccccCCCCCchhhhhhhhhhhcccccc
Q 000688 320 YSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSSAPESKQANSLNKLLGLDGI 399 (1350)
Q Consensus 320 ~siimLntdlhn~~~k~kmt~~~Fi~n~~g~~~~~d~~~~~L~~iY~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (1350)
||+||||||+|||+||+|||++|||+||||||+|+|+|+|||+.+||+|..+||+|.++...+...+.++..+..|.++.
T Consensus 644 fSlIMLnTDlHnp~vKnKMTK~dFI~nnrgind~~dlp~e~L~~lYd~I~~~Eikm~~~~~~~~~~~~s~~~~~~~~~~~ 723 (1514)
T KOG0929|consen 644 FSLIMLNTDLHNPNVKNKMTKADFIRNNRGINDGKDLPEEYLEALYDEIEYKEIKMKSDSLLPISSESSNLPKLLGLTGI 723 (1514)
T ss_pred HHHHHHhccccCchhhccccHHHHHHhcccccCcccChHHHHHHHHHHhhhccccccccccccccCCCCcchhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999998887666666666777788887
Q ss_pred hhhhhcchHHHHHhhhhHHHHHHHHHHHhcccCCCCCceEeccchhhHHHHHHHhHHHHHHHHHhhhhcCCcHHHHHHHH
Q 000688 400 LNLVIGKQTEEKALGANGLLIRRIQEQFKSKSGKSESLYHAVTDPGILRFMVEVCWGPMLAAFSVTLDQSDDKLATNQCL 479 (1350)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~Mfe~~W~~ilaals~~l~~s~D~~~~~~~L 479 (1350)
.|...+++.....+..+ +..++.++....+.||.++|.+|+|+||+.+|+|+++|++..++.++|..+...|+
T Consensus 724 ~~l~~~~r~~~~~~s~~-------~~~~~e~~s~~~s~~~~ath~~~Vr~m~e~~W~p~laafs~~~~~sdd~~~~n~cl 796 (1514)
T KOG0929|consen 724 LNLRSNSRMSAIDMSAS-------QSQLKEKGSLSESVFYSATHLISVRPMFESLWTPMLAAFSVGLQDSDDLEIANLCL 796 (1514)
T ss_pred cccchhhhhhHHHhhhh-------HHHHHHhcccccccceecccceeeeccccccccchhhhhchhhhcCCccccccccc
Confidence 77766665554444332 22333345555789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCchHHHHHHHHHHHhccCCCccccchhhHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHh
Q 000688 480 QGFRHAVHVTAVMGMQTQRDAFVTSVAKFTYLHCAADMKQKNVDAVKAIISIAIEDGNHLQEAWEHILTCLSRIEHLQLL 559 (1350)
Q Consensus 480 ~g~~~~i~ia~~f~l~~~rdafl~sL~kft~L~~~~~~~~Knv~air~Ll~la~~~G~~L~~sW~~IL~~is~le~lqli 559 (1350)
+||+.++||++.|+|+..||||+++|++||.|+.+.+|+.||++++|+++.||.++||++.++|.+|+.|++|+|++|++
T Consensus 797 ~g~r~ai~ia~~f~~~~~rdAfv~al~~ft~l~~~~e~k~kNi~aik~l~~ia~t~gn~l~~sW~~Il~cisqlE~~qli 876 (1514)
T KOG0929|consen 797 DGFRLAISIASIFSMELGRDAFVQALARFTNLHAPSEMKQKNIDAIKALLEIADTDGNKLFDSWLDILKCISQLEHTQLI 876 (1514)
T ss_pred cchhheeeehhhhcCCccccHHHHHHHHHHhccCHHHHhHhhHHHHHHHHHHhhcccchhHhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccccccccchhhhhhcccCCCCCccccCCCCCCcchhhhcCCccccCCcCCCCCCCCCHHHHHHHhhhhhhhh
Q 000688 560 GEGAPTDASFLTVSNVEADEKTQKSMGFPSLKKKGTLQNPSVMAVVRGGSYDSTTVGVNSPGLVTPEQINHFIANLNLLD 639 (1350)
Q Consensus 560 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ss~~~~~~~~~~t~~ei~~~~~~~~~~~ 639 (1350)
+.|++++...... +... .. .. .+|+|+..+.++.......+.++..+
T Consensus 877 ~sg~~~~~~~~~~----s~~~--------~~------~~-------~~~~~~~~~~~s~~e~~~~~~s~s~v-------- 923 (1514)
T KOG0929|consen 877 GSGSPPNKLPFVV----SQRE--------DY------KK-------PGGSYDSSGDGSRIENVGEKSSVSVV-------- 923 (1514)
T ss_pred cCCCCcccCcchh----hhch--------hc------cC-------CcccccccccccchhccccchhHHHH--------
Confidence 9999876432211 1000 00 00 02334333322222222222233222
Q ss_pred hhhhcchhHHHHhcccCChHHHHHHHHHHHHhchhhhcCCCCCCcchHHHHHHHHhhcccccccchhhhHHHHHHHHHHh
Q 000688 640 QIGNFELNHVFAHSQRLNSEAIVAFVKALCKVSISELQSPTDPRVFSLTKLVEIAHYNMNRIRLVWSRMWNVLSDFFVSV 719 (1350)
Q Consensus 640 ~i~~~~id~lF~~S~~L~~eai~~fv~AL~~vS~eel~~~~~pr~F~L~kLveva~~Nm~Ri~~~W~~iW~~l~~~f~~v 719 (1350)
.++|+||++|..++++||++||+|||+||++|+.++++||+|+|||+|||++|||.|||++|++||.++++||+.|
T Consensus 924 ----i~~d~Ift~S~~l~~eaIv~FvkaLc~vs~~eL~s~~~PrlfslqK~VeIs~ynM~rIrl~ws~iw~vlg~~F~~v 999 (1514)
T KOG0929|consen 924 ----IQMDRIFTSSQRLDSEAIVDFVKALCKVSMDELLSPSTPRLFSLQKLVEISYYNMNRIRLVWSRIWAVLGEFFVSV 999 (1514)
T ss_pred ----HHhhhhhcccccCCchHHHHHHHHHHHHHHHHhcCCCCCCeeecccceeeeccccccchhhHHHHHHHhhhhhhcc
Confidence 2499999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccHhHHHHHHHHHHHHHHHhcchhhhhhhhhhhhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCChHHH
Q 000688 720 GLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSV 799 (1350)
Q Consensus 720 ~~~~n~~v~~~AidsLrqLs~kfLe~eEL~~f~fQ~~fL~Pf~~im~~~~~~eIre~iL~cl~~~l~~~~~~I~SGWk~I 799 (1350)
||++|..|+.||+|+|||++|||++++|+++|+||++||+||+++|.++.+++|||+|+||+. +|++|||+.|
T Consensus 1000 g~~~n~~vaifa~DslRQlsmkfle~~el~~f~Fq~~fl~Pfe~im~~s~s~~Irelv~rC~~-------~nikSGWk~i 1072 (1514)
T KOG0929|consen 1000 GCNSNESVAIFALDSLRQLSMKFLERSELDNFRFQKDFLRPFEHIMKRSSSAEIRELVVRCIS-------SNIKSGWKNI 1072 (1514)
T ss_pred ccCCCCceEEEehhhhHHhhhhhcchhhhhhhhHHHhhcCcchHHhhccCcchhHHHHHhhhh-------hhhhhhhhHH
Confidence 999999999999999999999999999999999999999999999999999999999999998 8999999999
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHhhcCCccccccchHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHhhcCC
Q 000688 800 FSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGG 879 (1350)
Q Consensus 800 F~il~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~~~~d~niSL~Ai~~l~~~~~~L~~~~ 879 (1350)
|+|++.||.+.++.+|..+|+++..|++++|..+.+++.++|.||+.||.+|+++....++|++||+++|.|+.++.++
T Consensus 1073 f~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~- 1151 (1514)
T KOG0929|consen 1073 FKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVKCLEEFTKNLGFPDDSLNAIRFLRLCALKLAEG- 1151 (1514)
T ss_pred HHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhccc-
Confidence 9999999999999999999999999999999988866669999999999999999999999999999999999999876
Q ss_pred cccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHcCCCCChhhHH
Q 000688 880 LVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWM 959 (1350)
Q Consensus 880 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~L~~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~ 959 (1350)
.+.+.. + + ....+.+.|...|+|+|++|++++.|+|++||++|++++|+|+..||+.|..+||+
T Consensus 1152 -~~~~~~----------~----~-~~~~~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF~il~~~g~~F~~~~We 1215 (1514)
T KOG0929|consen 1152 -VYNEKL----------K----V-GKDSEFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLFDILKEHGDDFSKEFWE 1215 (1514)
T ss_pred -cchhhc----------c----c-ccccccccceeeeehhHhhhhHHhhccHHHHHHHHHHHHHHHHHhhhhhccHHHHH
Confidence 111110 0 0 00114556889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhhhhcccCCCCCCCCCCCCCCCCCCcccccHHHhHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHhhc
Q 000688 960 GVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGFIR 1039 (1350)
Q Consensus 960 ~i~~~VLfPi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~eT~~~al~~l~~lf~~yf~~l~~~l~~~L~lL~~~i~ 1039 (1350)
.+|+ +|||||+.++...... +..+|++|||++||+.+|+||++||+.++.+|+.++.+|.+|||
T Consensus 1216 ~v~~-~~fpIF~~~~~~~~~~---------------~~~eW~~tT~~~Al~~~v~lf~~~~~~l~~lL~~~~~ll~~ci~ 1279 (1514)
T KOG0929|consen 1216 DVFR-ILFPIFDNVKLDEDES---------------EKDEWLSTTCNHALQALVDLFTQFFKQLNNLLPKVLGLLVGCIK 1279 (1514)
T ss_pred HHHH-heeecccccCcccchh---------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999 9999999998754331 33449999999999999999999999999999999999999999
Q ss_pred cCCcchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhhchhhHHHhhhccccccCCCCCCccccccccCCCCCCC
Q 000688 1040 SPIQGPASTGVAALLHLAGELGSRLSQDEWREILLALKETTASTLPSFVKVLRTMNDIEIPNTSQSYADMEMDSDHGSIN 1119 (1350)
Q Consensus 1040 ~~~~~la~ig~~~l~~Ll~~~~~~f~~~~W~~i~~~~~~l~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1119 (1350)
|+|+++|++|++||++|+.+||.+|++++|+++++++.++|++|+|.++..++.+.+.. . ++
T Consensus 1280 ~~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~~~e~~~~T~p~~l~~~~~~~~~~--~------------~~---- 1341 (1514)
T KOG0929|consen 1280 QDNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNCILEAFKTTLPHELLTWRTMSDIS--S------------EQ---- 1341 (1514)
T ss_pred CcchhhHHhHHHHHHHHHHhcccccCHhhHHHHHHHHHHHHHhcCcHHHhcccccCCCc--c------------cc----
Confidence 99999999999999999999999999999999999999999999999998886554432 0 00
Q ss_pred CCcchhhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhHhhhcCCHHHHHHHHHhhc
Q 000688 1120 DNIDEDNLQTAAYVVSRMKSHITLQLLSVQVAANLYKLHLRLLSTTNVKILLDIFSSIASHAHELNSELVLQKKLQRVCL 1199 (1350)
Q Consensus 1120 ~~~~~~~~~~~~~~~~~~k~~cvlqLllIq~~~eL~~~~~~~l~~~~l~~ll~~L~~s~~fA~~fN~~~~Lr~~L~k~g~ 1199 (1350)
++.......-..+.....|.+ .++| .++.+||++|+.+|++||.++++||++||+|++||.+||++|.
T Consensus 1342 ~e~~~~~~~~v~~~~~~~k~~-----------~~~~-~~~~~l~~~~~~~l~d~l~~s~~fa~~fN~d~~lR~~l~~~~~ 1409 (1514)
T KOG0929|consen 1342 NELSQTISNIVFYPATESKED-----------TDLL-GMYTSLSAQHLLKLLDILSESHEFAKQFNSDYELRTKLWRAGK 1409 (1514)
T ss_pred ccccccccccccccccchHHH-----------HHHH-HHHhhCCHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhcc
Confidence 111110001122222333443 3444 7889999999999999999999999999999999999999995
Q ss_pred ccCCCCCCchhhhhHHHHHHHHHHHHhhcCCCCcchHHhHHHHHHHHHHHHHHHHHccccchhHHHHhhhhhhhhhccCC
Q 000688 1200 VLELSDPPMVHFENESYQTYLNFLRDSLTGNPSASEELNIESHLVEACEMILQMYLNCTGQQKVKAVKQQRVVRWILPLG 1279 (1350)
Q Consensus 1200 ~~~~~~PnLlkQE~~S~~~~l~iL~~~~~d~~~~~~~~~~~~~L~~lc~~il~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 1279 (1350)
+++ +|||||||++|+++||.|||+||.|+++.+ +++++||+++|.+||++|+++..+++
T Consensus 1410 ~~~--~pnLL~qE~~s~~~~l~~lf~~~~~~~~~~--~~i~~~l~~~c~~~l~~y~~~~~~~~----------------- 1468 (1514)
T KOG0929|consen 1410 GSQ--KPNLLRQETSSLACYLDILFRLLKDDPRVS--EEIESRLVTVCSEVLKGYLSLTSETH----------------- 1468 (1514)
T ss_pred cCC--CcchhhHHHHHHHHHHHHHHHHhccCcccc--HHHHHHHHHHHHHHHHHHHhccccch-----------------
Confidence 555 999999999999999999999999999876 99999999999999999999999888
Q ss_pred chhhhhhhhhhhHHHHHHHHhhcCChHHHHHHhhhHhHHHHHHHcCCCCchhHHHHHHHHHHhhh
Q 000688 1280 SARKEELAARTSLVVSALRVLSGLERETFKKYLSNIFPLLIDLVRSEHSSREVQLVLGTMFQSCI 1344 (1350)
Q Consensus 1280 ~~~~r~i~a~~pvvv~~L~~~~~l~~~~F~~~~~~~ypll~~Li~~~~~~~evr~aL~~~f~~rv 1344 (1350)
+|| +.. +++.|..|.|.+|++||+++.++ .++++|++++.||. ||
T Consensus 1469 -------~a~----------~~~-~~~~~~~~~~~~~~~l~~~~~~~-~~~~~r~~~~~~~l-r~ 1513 (1514)
T KOG0929|consen 1469 -------EAW----------LTP-SDEEFSARAPLYYALLCAMCAFD-LDPELRHLLRFFFL-RV 1513 (1514)
T ss_pred -------hhh----------cCC-cHHHHhccCchHHHHHHHHHHcC-CcHHHHHHHHHhhh-hc
Confidence 455 111 66677777777777777777776 34467777776665 44
No 3
>KOG0928 consensus Pattern-formation protein/guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-113 Score=1058.49 Aligned_cols=959 Identities=26% Similarity=0.400 Sum_probs=722.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHcCchhHHHHhHccCCCCCChh
Q 000688 2 AVFQLQCSIFMSLLSKYRSGLKAEIGIFFPMLVLRVLENVLQPSFVQKMTVLNLLEKISQDSQIIVDVFVNYDCDVDSPN 81 (1350)
Q Consensus 2 ~vf~~s~~If~~l~~~~r~~lK~ei~vf~~~i~l~ile~~~~~~~~qk~~~L~~l~~l~~~p~~~vely~NYDCd~~~~N 81 (1350)
.|+++-|++.++|..++|.++|.|+|.||+.+.+++......|+++|++++++++..+|+.|.+++|+|+|||||++|+|
T Consensus 366 ~~Lql~~s~vl~l~~~lr~~~k~qle~~Fs~l~~~~~~~~~~~~~~~~e~ale~lv~~~R~p~F~~e~yvNfDCd~~csn 445 (1386)
T KOG0928|consen 366 LVLQLFCSLVLNLYLALREQLKLQLEAFFSILLLRGTAEEYGPPYEQQEVALEALVLLCRIPSFLTEMYVNFDCDLYCSN 445 (1386)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHhcCCchhhhh
Confidence 37889999999999999999999999999999999998777889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCchhhHHHhHhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCC
Q 000688 82 IFERIVNGLLKTALGPPPGSTTSLSPAQDIAFRYESVKCLVSIIRSMGTWMDQQLRIGETYLPKGSETDSSIDNNSIPNG 161 (1350)
Q Consensus 82 ife~lv~~L~k~a~~~~~~~~~~~~~~~e~~l~~~~l~~l~~il~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (1350)
|||.+++.|+|.|++.....++...++ +. +.++.+|.+.+.......+.
T Consensus 446 lfedl~k~LtknafP~sg~~tt~~i~~---------l~--l~~v~~l~e~~~~~l~~~d~-------------------- 494 (1386)
T KOG0928|consen 446 LFEDLIKLLTKNAFPVSGPLTTASILP---------LD--LEGVLGLAENMIDELQDSDR-------------------- 494 (1386)
T ss_pred hHHHHHHHHHHccCCcccccccccccc---------hH--HHHHHHHHHHHHhhccccCc--------------------
Confidence 999999999999997654333322222 22 33444555544332211100
Q ss_pred CCCCCCCcccccCCCCCCCChHHHHHHHHhHHHHHHHHHHhccCchhhHHHHHhcCCCC--CCHHHHHHHHhcCCCCChh
Q 000688 162 EDGSVPDYEFHAEVNPEFSDAATLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVG--DSPEEVASFLKNTTGLNET 239 (1350)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~e~~k~~K~~~~~~~~~Fn~~p~~gi~~l~~~~~i~--~~p~~ia~fl~~~~~l~k~ 239 (1350)
++-..... + .+ ..+.+.|++|+++..|++.||+||||||+||+++|+|+ .+|..+|.|++++++|||+
T Consensus 495 ~ef~~~k~--------e-~~-v~~iR~rk~K~~li~gae~FNe~pkKGi~fL~ek~li~~~~d~~~~~~ffr~n~rLdKk 564 (1386)
T KOG0928|consen 495 EEFWTDKC--------E-VW-VLFIRSRKRKRELILGAELFNEDPKKGIEFLQEKGLIPSDLDPTSVAEFFRYNPRLDKK 564 (1386)
T ss_pred CccccCCc--------c-hh-hhhhccchhhHHHHHHHHHhccChhhHHHHHHhcCccCCCCChHHHHHHHHhCccccHH
Confidence 00000000 0 11 12233333689999999999999999999999999998 5899999999999999999
Q ss_pred HHHhhhcccchhHHHHHHHHHhcCCCCCCCchHHHHHHhccCCCCCchHHHHHHHHHHHHHHhhhCC-CCCCCccHHHHH
Q 000688 240 MIGDYLGEREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNP-SSFTSADTAYVL 318 (1350)
Q Consensus 240 ~igeylg~~~~~~~~vl~~y~~~~df~~~~~~~alR~~l~~f~LpgE~q~idri~e~Fa~~y~~~np-~~f~~~d~~y~l 318 (1350)
+||+|||++++ .+||++|++.|||+||++|+|||.||++||||||+|+|+|+||+||+|||++|+ ++|.++|+||+|
T Consensus 565 ~iGdfLc~~k~--~~vLn~Fi~tFdF~gmrlDeALRl~L~sFRLPGESQ~IeRVlEAFSery~~~n~~~~~~~kDavFvL 642 (1386)
T KOG0928|consen 565 TIGDFLCDPKN--VSVLNEFIGTFDFQGMRLDEALRLFLESFRLPGESQKIERVLEAFSERYYSDNSPDIFADKDAVFVL 642 (1386)
T ss_pred HHHHHhcCcch--HHHHHHHHHhcCcCCCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhcCCCccccccchhhhh
Confidence 99999999988 689999999999999999999999999999999999999999999999999888 899999999999
Q ss_pred HHHHHhhhhhhhhhhcCCCCCHHHHHHhhcCCCCCCCCCHHHHHHHHHHHhhCcccccCCCCCchhhhhhhhhhhccccc
Q 000688 319 AYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSSAPESKQANSLNKLLGLDG 398 (1350)
Q Consensus 319 a~siimLntdlhn~~~k~kmt~~~Fi~n~~g~~~~~d~~~~~L~~iY~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (1350)
||||||||||+||||||+|||++||+||+||+|+|+|||+|||++||++|+.+||+||+++++.....+.
T Consensus 643 sYSIIMLNTDqHNpqVK~~MT~dDf~rNlrg~n~g~DFpreyLseiY~SIk~~EIvmPee~hG~~~~~~~---------- 712 (1386)
T KOG0928|consen 643 SYSIIMLNTDQHNPQVKRKMTFDDFIRNLRGINGGKDFPREYLSEIYQSIKTNEIVMPEEHHGTEEMFEY---------- 712 (1386)
T ss_pred hhhhheecccccChhhhccCCHHHHhhhcccccCCCCCCHHHHHHHHHHHhhcceecccccCCchhhhHH----------
Confidence 9999999999999999999999999999999999999999999999999999999999998875432211
Q ss_pred chhhhhcchHHHHHhhhhHHHHHHHHHHHhcccCCCCCceEeccchhhHHHHHHHhHHHHHHHHHhhhhcCCcHHHHHHH
Q 000688 399 ILNLVIGKQTEEKALGANGLLIRRIQEQFKSKSGKSESLYHAVTDPGILRFMVEVCWGPMLAAFSVTLDQSDDKLATNQC 478 (1350)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~Mfe~~W~~ilaals~~l~~s~D~~~~~~~ 478 (1350)
.|.. ++ .++.+.+..+.......+.|.||..+|+|++||++++|+.+.++++.+.|
T Consensus 713 -----~W~~-----------L~--------~~sktt~~~~~~~~~~~~drdlF~~v~gp~iaals~vFd~a~~d~I~~r~ 768 (1386)
T KOG0928|consen 713 -----RWIN-----------LI--------SRSKTTEPFILRDFTLVYDRDLFAMVWGPIIAALSYVFDVAESDTILQRC 768 (1386)
T ss_pred -----HHHH-----------HH--------hcccccCceeeccchhhhhHHHHHHHccchHHHHHHHhchhhHHHHHHHH
Confidence 2211 11 12444556666777778999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCchHHHHHHHHHHHhccCCCccc----c------chhhHHHHHHHHHHHHhcCCchhhhhHHHHH
Q 000688 479 LQGFRHAVHVTAVMGMQTQRDAFVTSVAKFTYLHCAAD----M------KQKNVDAVKAIISIAIEDGNHLQEAWEHILT 548 (1350)
Q Consensus 479 L~g~~~~i~ia~~f~l~~~rdafl~sL~kft~L~~~~~----~------~~Knv~air~Ll~la~~~G~~L~~sW~~IL~ 548 (1350)
++|+++|+.|++++|+.+..|..+.+|||||.|.+|.. . ..|--.|..|++-+|+..|++++.+|+.|++
T Consensus 769 i~g~~k~a~isA~y~l~dv~ddli~slCkfTtL~~~s~~~eel~~~fged~ka~~At~tvf~~~n~~Gd~i~~gw~nI~~ 848 (1386)
T KOG0928|consen 769 IDGIRKCAKISAYYGLKDVFDDLIISLCKFTTLLNPSSTPEELVLAFGEDTKARMATLTVFFGANKFGDLIRVGWRNIVE 848 (1386)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccccCCccCchHHHHHhcccchhHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999976642 1 1255678999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCccccccccchhhhhhcc-cCCCCCccccCCCCCCcchhhhcCCccccCCcCCCCCCCCCHHH
Q 000688 549 CLSRIEHLQLLGEGAPTDASFLTVSNVEADEKTQK-SMGFPSLKKKGTLQNPSVMAVVRGGSYDSTTVGVNSPGLVTPEQ 627 (1350)
Q Consensus 549 ~is~le~lqli~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~ss~~~~~~~~~~t~~e 627 (1350)
|+.++.+++++...+-++..+.+. ...-.+... +...| ..+ +++. .+-..+.++|.+.. +...++.+|+++
T Consensus 849 ~~l~l~r~~llp~~~~e~~~~~~~--~~~~~~~~~~~~~~~-~~k--~~~s--s~Lls~fs~~Ls~d-~e~~~~~Ptee~ 920 (1386)
T KOG0928|consen 849 CLLQLNRLVLLPLRLIEDLKNEPE--LLKLNKLPVPQQEIS-INK--PRKS--SGLLSRFSSYLSGD-EEEERPCPTEEE 920 (1386)
T ss_pred HHHHHHhhccCcHhhhhhhhcCcc--ccccCCCCCCccccC-ccc--cccc--chHHHHHHHhcCCc-ccccCCCCcHHH
Confidence 999999999987765443322210 000000000 00000 000 0011 11122334454422 334567899999
Q ss_pred HHHHhhhhhhhhhhhhcchhHHHHhcccCChHHHHHHHHHHHHhchhhhcCCCCCCcchHHHHHHHHhhcccccccchhh
Q 000688 628 INHFIANLNLLDQIGNFELNHVFAHSQRLNSEAIVAFVKALCKVSISELQSPTDPRVFSLTKLVEIAHYNMNRIRLVWSR 707 (1350)
Q Consensus 628 i~~~~~~~~~~~~i~~~~id~lF~~S~~L~~eai~~fv~AL~~vS~eel~~~~~pr~F~L~kLveva~~Nm~Ri~~~W~~ 707 (1350)
++....+ .+||.+|+++++|++|+.|..+++.+++++|...+...-...++.+.|++++|+.|...|.+||.+.|..
T Consensus 921 l~~~~~a---~~cIk~c~i~~if~~s~~l~~~~l~~Ll~Sli~~s~~~s~~de~s~~F~lElli~I~l~nrdri~l~w~~ 997 (1386)
T KOG0928|consen 921 LSASKKA---LECIKECHIDQIFTKSKFLQAKSLLTLLKSLIAASNDLSMEDEESAVFCLELLIAITLSNRDRILLSWFA 997 (1386)
T ss_pred HhhhHHH---hhHHHhcCHHHHhhhcccccHHHHHHHHHHHHHhcCCccCcccchHHHHHHHHHHHHhccccceEeeehh
Confidence 9887765 5789999999999999999999999999999999876411124678999999999999999999999998
Q ss_pred hHHHHHHHHHHhcCCccHhHHHHHHHHHHHHHHHhcchhhhhhhhhhhhhhhhHHHHHhcC--CcHHHHHHHHHHHHHHH
Q 000688 708 MWNVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKS--GSAEIRELIIRCISQMV 785 (1350)
Q Consensus 708 iW~~l~~~f~~v~~~~n~~v~~~AidsLrqLs~kfLe~eEL~~f~fQ~~fL~Pf~~im~~~--~~~eIre~iL~cl~~~l 785 (1350)
+.+++-..++..-..+.. ....|+-.+.+++.|.+..++ ..-.++++++..+.... -....-+.|---+.+++
T Consensus 998 ~~e~ll~~~~~~~~~~~~-lvek~v~gl~rv~~rll~yk~----~l~d~l~~sl~~ll~L~~ki~d~~~~ki~i~~~~lv 1072 (1386)
T KOG0928|consen 998 VYEHLLGLLIQTLMGSPL-LVEKAVSGLLRVVNRLLPYKE----FLSDELLDSLRILLKLDPKILDAFLDKIAIFVSKLV 1072 (1386)
T ss_pred hHHHHHHHHHHhhcCCch-hHHHHHHHHHHHHHHHhhhhh----hhhHHHhhhHHHHHhhcHHHHHHHHHHHHHHHHHHH
Confidence 888877777653322222 334555567778888887433 12456778887765543 23456777778888899
Q ss_pred HhccccccC--ChHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhhcCCccccccchHHHHHHHHHHHHcCCCCc-cccH
Q 000688 786 LSRVSNVKS--GWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNS-DVCL 862 (1350)
Q Consensus 786 ~~~~~~I~S--GWk~IF~il~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~~~~d~-niSL 862 (1350)
.++..++++ ||+++|..|..+++. ++.-..+|..+.-.+.|-.+.. ++.|..||+|...|+.....+ .-++
T Consensus 1073 ~~n~~~v~~~~~w~~~~slL~~~~~h--~~a~~~~~~~~l~~m~e~~hl~----~~~fe~~v~~~~~fve~~~~~~~~~l 1146 (1386)
T KOG0928|consen 1073 KANAANVHSKDGWALLFSLLELTARH--PEADFLKFYRLLSKMSEASHLT----PDNFELYVDCGSTFVEARVGQIMRSL 1146 (1386)
T ss_pred HHHHHHhhccccHHHHHHHHHHHhcC--CchhHHHHHHHHHHhhccccCC----hHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888765 999999999999874 4444555666665555544433 589999999999998542210 0111
Q ss_pred HHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCC-CCcccchhhHHHHHHHHhhhcCCChHHHHHHHHHH
Q 000688 863 NAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSF-SDKDDNSSFWVPLLTGLSKLTSDSRSTIRKSSLEV 941 (1350)
Q Consensus 863 ~Ai~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lW~pLL~~L~~l~~d~R~eVR~~Alqt 941 (1350)
.. -|.++..+..- .+...+ .++...++... .+.......|.+|+.++.++|.|+|.+||+.|++.
T Consensus 1147 ~~-------lde~s~sg~~~-~kw~~~------~~~~~~~~~~~~~~~~~~~~~wl~l~~~~~kl~L~~r~~vRn~aL~~ 1212 (1386)
T KOG0928|consen 1147 SL-------LDEMSSSGEVL-DKWEIE------AKNATESGDESKKSNNYRSEIWLILLQIIRKLCLLSRRGVRNAALTK 1212 (1386)
T ss_pred ch-------hhhhcccccch-hHHHHH------HhhhhcccccccccchhhHHHHHHHHHHhhhcchhhhhhhHHHHHHH
Confidence 11 11111111000 000000 00000011101 11122345999999999999999999999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHHHhHhhhhcccCCCCCCCCCCCCCCCCCCcccccHHHhHHHHHHHHHHHHHHHHH
Q 000688 942 LFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGAECLVDIFICFFD 1021 (1350)
Q Consensus 942 LF~iL~~~G~~f~~~~W~~i~~~VLfPi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~eT~~~al~~l~~lf~~yf~ 1021 (1350)
+.+++..-+..+.+..|..||+.|+||+++.+....... .+...-+..|..+|.+.++++|.+|+.
T Consensus 1213 lqr~~~~~~q~l~~~~~~~Cf~~vlfpll~~l~~~l~~~--------------~~~~~~me~t~~~~~~Ll~k~~L~~lq 1278 (1386)
T KOG0928|consen 1213 LQRIIGALDQGLAHSYWNPCFDLVLFPLLTDLLELLSDA--------------SEKGNEMEVTLLLATKLLSKVFLQELQ 1278 (1386)
T ss_pred HHHHHHhhhcccchHHHHHHHHHHhHHHHHHHHHHhccc--------------ccccchHHHHHHHHhhhhHHHHHHHHH
Confidence 999877889999999999999999999999997643221 111114578999999999999999997
Q ss_pred hHH------hhHHHHHHHHHHhhccCC-----cchhHHHHHHHHHHHHh--hCCCC-------CHHHHHHHHHHHHHHHh
Q 000688 1022 VVR------SQLPGVVSILTGFIRSPI-----QGPASTGVAALLHLAGE--LGSRL-------SQDEWREILLALKETTA 1081 (1350)
Q Consensus 1022 ~l~------~~l~~~L~lL~~~i~~~~-----~~la~ig~~~l~~Ll~~--~~~~f-------~~~~W~~i~~~~~~l~~ 1081 (1350)
.+. .+|.++++.++.|+.-.. +.+..+....++..+.. .++-+ .+.-|+.....+.
T Consensus 1279 ~ls~~~~f~~Lwl~~ld~m~~l~~~~~~e~~~~~l~e~~pe~l~~~~~~m~~~ei~~~~~~~~~~~~w~~tw~~~~---- 1354 (1386)
T KOG0928|consen 1279 DLSSLSMFSTLWLGVLDRMEKLMRGKTSEETSDKLNEIVPELLKNMLLVMKLQEIILDKDEIGKDSLWEITWERLN---- 1354 (1386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHhhhhhhhhhhhhhhhccccccCcccccccchHHHHHHHHH----
Confidence 654 579999999999998643 66677777777666654 11111 2236876665543
Q ss_pred hchhhHHHhh
Q 000688 1082 STLPSFVKVL 1091 (1350)
Q Consensus 1082 ~t~~~~~~~~ 1091 (1350)
.+.|+..+-+
T Consensus 1355 ~~~p~l~~El 1364 (1386)
T KOG0928|consen 1355 KIAPSLRDEL 1364 (1386)
T ss_pred hcCchhhhhh
Confidence 3666655433
No 4
>COG5307 SEC7 domain proteins [General function prediction only]
Probab=100.00 E-value=8.2e-87 Score=839.38 Aligned_cols=927 Identities=26% Similarity=0.364 Sum_probs=697.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHcCchhHHHHhHccCCCCC-C
Q 000688 1 MAVFQLQCSIFMSLLSKYRSGLKAEIGIFFPMLVLRVLENVLQPSFVQKMTVLNLLEKISQDSQIIVDVFVNYDCDVD-S 79 (1350)
Q Consensus 1 ~~vf~~s~~If~~l~~~~r~~lK~ei~vf~~~i~l~ile~~~~~~~~qk~~~L~~l~~l~~~p~~~vely~NYDCd~~-~ 79 (1350)
.+||+.+|+|+|.++..++..+|.|+++||.++|+++++.+ +++..||..-|....+.|..|+ ++.|+||||... .
T Consensus 66 ~~v~~v~~~i~~~~~~~~~~~f~~~~~~~f~s~~f~i~~~~-~~s~~q~~~~l~~~~~~~~~~r--l~~~i~~d~~~~~~ 142 (1024)
T COG5307 66 LPVFEVGLEIIGLRLSNLPKLFKLESSVFFISIYFPISHTT-STSLQQKSSELSTSQVVILLSR--LERYINYDVGRGFM 142 (1024)
T ss_pred hhhhhhhHHHHHHHHhhhhhhhhhccchHHHHHhhhhhccc-ccchhhhhHHhHhhhhhhcccc--hhhhcccccccccc
Confidence 37999999999999999999999999999999999999986 7888999999999999999999 999999999987 8
Q ss_pred hhHHHHHHHHHHhhccCCCCCC----------CC------CCCchhhHHHhHhhHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 000688 80 PNIFERIVNGLLKTALGPPPGS----------TT------SLSPAQDIAFRYESVKCLVSIIRSMGTWMDQQLRIGETYL 143 (1350)
Q Consensus 80 ~Nife~lv~~L~k~a~~~~~~~----------~~------~~~~~~e~~l~~~~l~~l~~il~sl~~~~~~~~~~~~~~~ 143 (1350)
.|++++....+++.+...|+-. .. .+...-++..+.....|.+++++++.. ..+.......
T Consensus 143 ~~~~~~~~~~~s~~~t~~p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~is~l~~l~~---~sl~~s~~~~ 219 (1024)
T COG5307 143 ENITERTAFPLSRPSTNDPPETRSLIIEQLSILWISSPYFFLTLISDFQCDLDSSDCSISFLKGLTK---NSLVPSAYYT 219 (1024)
T ss_pred hhhhhccCCccccccccCCCcchhhhhhhhhhcCCCCCccccccccchhhhhHHHHHHHHHHHHHhh---cccchhhhhc
Confidence 9999999999998774433211 00 001123667889999999999998872 2111100000
Q ss_pred CCCC-----CCCC--CCCCCC-CCCCCCCCCCCcccccCCCCCCCChHHHHHHHHhHHHHHHHHHHhccCchhhHHHHHh
Q 000688 144 PKGS-----ETDS--SIDNNS-IPNGEDGSVPDYEFHAEVNPEFSDAATLEQRRAYKIELQKGISLFNRKPSKGIEFLIN 215 (1350)
Q Consensus 144 ~~~~-----~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~k~~K~~~~~~~~~Fn~~p~~gi~~l~~ 215 (1350)
.++. |... +.+.++ ..++. .+ ++.....+..-.....|++|..+++++..||.+|++||..|.+
T Consensus 220 ~~~~~~~s~e~~~~~~~~~~~~~~~~~------~d--~~s~~~~~~~~~~~~~k~rkt~~~e~~~~fn~kp~~gi~~l~~ 291 (1024)
T COG5307 220 NKDVPPLSGEGLVSGSKSMVNSMKNSS------RD--SSSFVNSDSSIVNLGIKKRKTELIECIQAFNEKPKKGIASLID 291 (1024)
T ss_pred ccCCCCcccchhhhcCCcccccccccc------cC--hhhhccchHHHhhhccccchHHHHHHHHHhhhcCcccchhhcc
Confidence 0000 0000 000000 00000 00 0000000111122236778999999999999999999999999
Q ss_pred cCCCC-CCHHHHHHHHhcCCC-CChhHHHhhhcccchhHHHHHHHHHhcCCCCCCCchHHHHHHhccCCCCCchHHHHHH
Q 000688 216 SKKVG-DSPEEVASFLKNTTG-LNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRI 293 (1350)
Q Consensus 216 ~~~i~-~~p~~ia~fl~~~~~-l~k~~igeylg~~~~~~~~vl~~y~~~~df~~~~~~~alR~~l~~f~LpgE~q~idri 293 (1350)
.+++. +++.++|.||..+.+ +||+.+|+|||++++.|..||++|++.|||+|++||+|||.||+.||||||+|+||||
T Consensus 292 ~~~i~~d~~~sia~~L~~~~~~l~k~~lg~~L~~~~~kn~~vL~~Fi~~fdFk~~~i~eALR~lL~sfrLPgEaQqIDRi 371 (1024)
T COG5307 292 SEFIDSDSHKSIAEILEGTEGRLDKKKLGLYLGTDDDKNNAVLREFISLFDFKGLDIDEALRKLLQSFRLPGEAQQIDRI 371 (1024)
T ss_pred cccCCcccchHHHHHHHhccCcccHHHHHHHhcCCchhHHHHHHHHHHhcCcCCCcHHHHHHHHHHheecCchHHHHHHH
Confidence 99997 589999999998776 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCCCCc-cHHHHHHHHHHhhhhhhhhhhcCCCCCHHHHHHhhcCCCCCCCCCHHHHHHHHHHHhhCc
Q 000688 294 MEKFAERYCKCNPSSFTSA-DTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNE 372 (1350)
Q Consensus 294 ~e~Fa~~y~~~np~~f~~~-d~~y~la~siimLntdlhn~~~k~kmt~~~Fi~n~~g~~~~~d~~~~~L~~iY~~I~~~~ 372 (1350)
||+||.+||.|||+.|.++ |+||+||||+||||||+|||++|.|||++||++|+||+|+|+|||++||+++|++|+++|
T Consensus 372 le~FS~~Y~~~Np~~~~~~~D~vyiLafSlimLNTDlHNp~iK~kMT~~df~~N~~g~n~g~~~~~~~L~~~Y~~I~~ke 451 (1024)
T COG5307 372 LEAFSDKYYSDNPKKFSSKPDSVYILAFSLIMLNTDLHNPNIKAKMTFEDFSKNLRGENTGRDFPEEFLEEFYDNIKKKE 451 (1024)
T ss_pred HHHHHHHHHHhCcccccCccceeehhHHHHHHHhccccChhhhccccHHHHHhhhcccCCccccCHHHHHHHHHHHhhcc
Confidence 9999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCchhhhhhhhhhhcccccchhhhhcchHHHHHhhhhHHHHHHHHHHHhcccCCCCCceEeccchhhHHHHHH
Q 000688 373 IKMNADSSAPESKQANSLNKLLGLDGILNLVIGKQTEEKALGANGLLIRRIQEQFKSKSGKSESLYHAVTDPGILRFMVE 452 (1350)
Q Consensus 373 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~Mfe 452 (1350)
|+++++++.........+....... ..+. . .+++......+.+.+++.++++
T Consensus 452 i~~~e~~~~~~~~~~~~~~~~~ss~-----------------------~~~~-~----~~rd~~~~~~~~~f~~v~~~~e 503 (1024)
T COG5307 452 IVLPEEHHSSETSPEDNWPSLDSSF-----------------------TNIA-E----FGRDNQRVADATHFDHVGPIFE 503 (1024)
T ss_pred ccchhhcccccccccccchhhhhhh-----------------------hhhh-h----cccccccchhHhhhhhcchHHH
Confidence 9999988754332221111100000 0000 0 0111122224678899999999
Q ss_pred HhHHHHHHHHHhhhhcCCcHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHhccCCCccccchhhHHHHHHHHHHH
Q 000688 453 VCWGPMLAAFSVTLDQSDDKLATNQCLQGFRHAVHVTAVMGMQTQRDAFVTSVAKFTYLHCAADMKQKNVDAVKAIISIA 532 (1350)
Q Consensus 453 ~~W~~ilaals~~l~~s~D~~~~~~~L~g~~~~i~ia~~f~l~~~rdafl~sL~kft~L~~~~~~~~Knv~air~Ll~la 532 (1350)
.+|.+++++++..+..++....+..|.+ +|+.|+++.+|++|+.+++++|.+++..
T Consensus 504 t~~~~i~~s~s~~~~~s~~~~si~~~~~-------ia~~f~~n~p~~~~~~~~s~~t~l~~~S----------------- 559 (1024)
T COG5307 504 TSLFPILMSASDDLYSSDGVVSISKCTR-------IAANFDFNDPRDAFLESLSEFTTLINSS----------------- 559 (1024)
T ss_pred HHHHHHHhhhcchhcccccchHhhcccc-------hhhcceecchhHHHHHHhhccCCccccC-----------------
Confidence 9999999999999998888766655554 9999999999999999999999987544
Q ss_pred HhcCCchhhhhHHHHHHHHHHHHHHHhcCCCCCCccccccccchhhhhhcccCCCCCccccCCCCCCcchhhhcCCcccc
Q 000688 533 IEDGNHLQEAWEHILTCLSRIEHLQLLGEGAPTDASFLTVSNVEADEKTQKSMGFPSLKKKGTLQNPSVMAVVRGGSYDS 612 (1350)
Q Consensus 533 ~~~G~~L~~sW~~IL~~is~le~lqli~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~s 612 (1350)
..+|+++..+|..++.+++++++.+.++.|. .+. + +++-......+. ..+...+.+... ... ....-.+..
T Consensus 560 ~~~~~~~~~~~~d~~~~is~~~~~~~i~~~~-~~q--l--~~v~~~~~~~k~-~~~~i~~s~~~~--~i~-~~~~~~~~~ 630 (1024)
T COG5307 560 VSEGPYLFIPSEDSLLSISVLELAARIGRGF-EDQ--L--SDVKLFRLRSKS-GNKEILSSSLLS--NIE-NKSLKLYLS 630 (1024)
T ss_pred ccccccccCccccccchhhHHHHHHHhcccc-hhh--c--chhHHhHHhhcc-ccccccchhhhh--hhh-hhHhhhhhh
Confidence 7889999999999999999999999999887 221 1 111010000000 000000000000 000 000000000
Q ss_pred CCcCCCCCCCCCHHHHHHHhhhhhhhhhhhhcchhHHHHhcccCCh-HHHHHHHHHHHHhchhhhcCCCCCCcchHHHHH
Q 000688 613 TTVGVNSPGLVTPEQINHFIANLNLLDQIGNFELNHVFAHSQRLNS-EAIVAFVKALCKVSISELQSPTDPRVFSLTKLV 691 (1350)
Q Consensus 613 s~~~~~~~~~~t~~ei~~~~~~~~~~~~i~~~~id~lF~~S~~L~~-eai~~fv~AL~~vS~eel~~~~~pr~F~L~kLv 691 (1350)
.-...+ ...+++.. ......++. ...++++...+.++. .++++++++++.... ..| .+|+.+
T Consensus 631 ~l~~~~--~~~~~~~~-~~~~~~~~~-----~~~~~i~~~~s~~s~~~~~l~~~k~~~~~d~------~~~---~~q~~v 693 (1024)
T COG5307 631 SLIEDG--KHFSPSIV-KKLGSPELP-----KLNPDISSGKSKLSVWSAVLSVFKAILSSDL------PSP---PLQKEV 693 (1024)
T ss_pred hhcCCC--cccccccc-ccccCcccc-----ccCcccccccccccccchHHHHHHHHHhccC------CCC---CcHHhh
Confidence 000000 00011000 000000110 136778899999999 899999999999321 123 899999
Q ss_pred HHHhhcccccccchhhhHHHHHHHHHHhcCCccHhHHHHHHHHHHHHHHHhcchhhhhhhhhhhhhhhhHHHHHhcCCcH
Q 000688 692 EIAHYNMNRIRLVWSRMWNVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSA 771 (1350)
Q Consensus 692 eva~~Nm~Ri~~~W~~iW~~l~~~f~~v~~~~n~~v~~~AidsLrqLs~kfLe~eEL~~f~fQ~~fL~Pf~~im~~~~~~ 771 (1350)
+++++||.||+.+ ..||+++...+..++++.+..+..+++|+.+|+.++|++.+|+.++.||..|+.|+++.+......
T Consensus 694 ~~s~~n~~~i~~~-~~i~~~~~~~~~~~~~~~~~~l~~s~~~~~~q~s~~f~~iee~~~~~f~~~~~~~~~~~~~~~~~~ 772 (1024)
T COG5307 694 DISKKNVDIIKSE-SKISNVLFKNSEGLSPDLNKTLLESALDSKSQLSSRFLEIEELSDFGFQIALLLPFEYSVEVSLVV 772 (1024)
T ss_pred hHHhhhhhhhhhh-hHHHhhcccchhhccccccccchhcccchhhhhccccCChhhhcchhHHHHHhcccccccccccee
Confidence 9999999999987 999999999999999999999999999999999999999999999999999999999988888889
Q ss_pred HHHHHHHHHHHHHHHhccccccCChHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhhcCCccccccchHHHHHHHHHHH
Q 000688 772 EIRELIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTF 851 (1350)
Q Consensus 772 eIre~iL~cl~~~l~~~~~~I~SGWk~IF~il~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F 851 (1350)
.|++..+.|..+++.++...+.+| +++|.++..+..... +...++.+.. .|. +. .+.++|.+.+-+-...
T Consensus 773 ~v~~~~~~~~~~~~~~~~s~~~s~-~~i~~~~~~~~~~~~---~~~~~s~~~~--~e~---v~-s~~n~f~~~~~~~~~~ 842 (1024)
T COG5307 773 AVKELVIGCSDNLLTEAASSIASG-KTIFEISAYEDLSST---LRYILSSLSN--DEL---VL-SQENLFIELLSSKNEG 842 (1024)
T ss_pred eeeeeehhhHHHHHHHHHHhhhcc-ccceeeeecccccch---hhhHHHHhcc--hhh---hh-ChhhHHHHHHhhhHHH
Confidence 999999999999999999999999 999999988765422 4444444422 122 21 1238899988888888
Q ss_pred HcCCCCccccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhHHHHHHHHhhh-cCCC
Q 000688 852 TNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKL-TSDS 930 (1350)
Q Consensus 852 ~~~~~d~niSL~Ai~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~L~~l-~~d~ 930 (1350)
..+..++.+.+.++++++..-..... |.-. .. .....+...+.|+++|.++.++ ++-.
T Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~----wk~~---------------~~--~~~~~~~~~~~~~~~l~~~~~i~~~~~ 901 (1024)
T COG5307 843 KQNDKNLELRLHSVDYLRFLLPNVEN----WKNL---------------SS--VLSANSNFSKDIFSYLEKYVKIGSSAL 901 (1024)
T ss_pred HHhccchhhhhccHHHHHHHhHHHHH----HHHH---------------HH--HHHhhhhhhHHHHHHHHHHHHhchhhh
Confidence 87777888888888887765444322 1000 00 0011122367999999999998 4667
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhHhhhhcccCCCCCCCCCCCCCCCCCCcccccHHHhHHHHHH
Q 000688 931 RSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGAE 1010 (1350)
Q Consensus 931 R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~eT~~~al~ 1010 (1350)
..++ |..+..++..|..++|+.+++.-++|++.......-.. . ... +++..-+|+++|...|+.
T Consensus 902 ~l~~--------f~~~l~~~d~~~~~~~e~i~~~~~~~~~~~~~~~~~~~--~-----~~~-~~~~~~~~~~~~~l~~l~ 965 (1024)
T COG5307 902 DLEN--------FDQLLSLLDDFMSAFWEKISKKESFYIKSGASGPNSDK--T-----NLD-NDEIELVWASTDLLAALK 965 (1024)
T ss_pred hHHH--------HHHHHHhhhHHHHHHHHHHhhhhhheeccccccCcccc--c-----ccc-chHHHHHHHHHHHHHHHH
Confidence 7777 99999999999999999999999999998775321110 0 111 235667899999999999
Q ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 000688 1011 CLVDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGSRLSQDEWREILLALKETT 1080 (1350)
Q Consensus 1011 ~l~~lf~~yf~~l~~~l~~~L~lL~~~i~~~~~~la~ig~~~l~~Ll~~~~~~f~~~~W~~i~~~~~~l~ 1080 (1350)
..+.+|..+|+.+. .+.+.+.++..| .+|.+++...+...|.+-.|+++-..+.+++
T Consensus 966 ~~~~~~~~~~e~~~-~~~~~~~l~~~c------------~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~ 1022 (1024)
T COG5307 966 EFIELFNSIFEKLE-ILAGKLILLHQC------------LNNCDQLGLGAIETLEEILWNKIDVPTNELF 1022 (1024)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhh------------cCcHhhhhhhhHHHHhhhhHHHhhcccchhc
Confidence 99999999999999 999999999999 7899999999999999999999987766654
No 5
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-54 Score=453.97 Aligned_cols=191 Identities=52% Similarity=0.886 Sum_probs=186.1
Q ss_pred HhHHHHHHHHHHhccCchhhHHHHHhcCCCCCCHHHHHHHHhcCCCCChhHHHhhhcccchhHHHHHHHHHhcCCCCCCC
Q 000688 190 AYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMD 269 (1350)
Q Consensus 190 ~~K~~~~~~~~~Fn~~p~~gi~~l~~~~~i~~~p~~ia~fl~~~~~l~k~~igeylg~~~~~~~~vl~~y~~~~df~~~~ 269 (1350)
++-+.+..|-.+||.+|+|||+||+++.++.++|++||+||+..+||+|++||+|||++++||++||++|++.+.|++++
T Consensus 60 q~~k~~~~GRKKFNmDP~Kgiq~l~e~~ll~~dpq~iA~flykGEGLnKtaIG~yLGer~~~nl~vL~aFv~~Hef~dln 139 (395)
T KOG0930|consen 60 QRNKQVAMGRKKFNMDPKKGIQFLIENDLLQNDPEDIARFLYKGEGLNKTAIGDYLGERDEFNLQVLHAFVDLHEFTDLN 139 (395)
T ss_pred HHhHHHhhchhhcCCChHHHhHHHHHcccccCCHHHHHHHHHhcCCcchhhHhhhhccCchhHHHHHHHHHHHHHhccch
Confidence 34455778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHhccCCCCCchHHHHHHHHHHHHHHhhhCCCCCCCccHHHHHHHHHHhhhhhhhhhhcCCCCCHHHHHHhhcC
Q 000688 270 FGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRG 349 (1350)
Q Consensus 270 ~~~alR~~l~~f~LpgE~q~idri~e~Fa~~y~~~np~~f~~~d~~y~la~siimLntdlhn~~~k~kmt~~~Fi~n~~g 349 (1350)
++.|||+||-+||||||||||||+||+||+|||.|||++|.|+|++|+|+||+|||||.|||||||+|-++|-||.+|||
T Consensus 140 lVqALRQfLwSFRLPGEaQKIdRmmEaFA~rYclcNPgvfqstDtcyvlsfs~IMlNTsLHNpNVrDkP~lErfi~MNrg 219 (395)
T KOG0930|consen 140 LVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSFAIIMLNTSLHNPNVKDKPTLERFIAMNRG 219 (395)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCcccccCceeeeeeehhhhhcccccCCCCCCCccHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCcccccCCCC
Q 000688 350 IDDGKDLPEEYLGVLYDQIVKNEIKMNADSS 380 (1350)
Q Consensus 350 ~~~~~d~~~~~L~~iY~~I~~~~i~~~~~~~ 380 (1350)
||.|.|+|+|.|..+|++|+.+++++|+|..
T Consensus 220 ineggdlpee~LrnlyeSi~~epFkIPeddg 250 (395)
T KOG0930|consen 220 INEGGDLPEELLRNLYESIKNEPFKIPEDDG 250 (395)
T ss_pred cccCCCCcHHHHHHHHHHhcCCCCCCCcccC
Confidence 9999999999999999999999999998865
No 6
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=100.00 E-value=5.2e-52 Score=443.24 Aligned_cols=183 Identities=60% Similarity=1.012 Sum_probs=179.6
Q ss_pred hHHHHHHHHHHhccCchhhHHHHHhcCCC-CCCHHHHHHHHhcCCCCChhHHHhhhcccchhHHHHHHHHHhcCCCCCCC
Q 000688 191 YKIELQKGISLFNRKPSKGIEFLINSKKV-GDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMD 269 (1350)
Q Consensus 191 ~K~~~~~~~~~Fn~~p~~gi~~l~~~~~i-~~~p~~ia~fl~~~~~l~k~~igeylg~~~~~~~~vl~~y~~~~df~~~~ 269 (1350)
+|..+++|+.+||++|++||+||++.+++ +++|++||+||+.+++|||.+||+|||++++++.+||++|++.|||+|++
T Consensus 1 ~k~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~~~~~iA~fl~~~~~l~k~~ig~~L~~~~~~~~~vL~~y~~~f~f~~~~ 80 (185)
T cd00171 1 RKTLLSEGRQLFNRKPKKGISFLIEKGFLEDDSPKEIAKFLYETEGLNKKAIGEYLGENNEFNSLVLHEFVDLFDFSGLR 80 (185)
T ss_pred CcHHHHHHHHHHccCHHHHHHHHHHCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHcCCchHHHHHHHHHHHhcCCCCCC
Confidence 36789999999999999999999999999 88999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHhccCCCCCchHHHHHHHHHHHHHHhhhCCCCCC-CccHHHHHHHHHHhhhhhhhhhhcCCCCCHHHHHHhhc
Q 000688 270 FGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFT-SADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNR 348 (1350)
Q Consensus 270 ~~~alR~~l~~f~LpgE~q~idri~e~Fa~~y~~~np~~f~-~~d~~y~la~siimLntdlhn~~~k~kmt~~~Fi~n~~ 348 (1350)
|++|||.||.+|+||||+|+|||||++||+|||+|||+.+. |+|++|+||||+||||||+|||++|+|||+++|++|++
T Consensus 81 i~~ALR~~l~~f~lpgE~Q~Idrile~Fs~~y~~~Np~~~~~~~d~v~~l~~sllmLnTdlHn~~~~~kmt~~~Fi~~~~ 160 (185)
T cd00171 81 LDEALRKFLQSFRLPGEAQKIDRLLEKFSERYCECNPGIFSSSADAAYTLAYSIIMLNTDLHNPNVKKKMTLEDFIKNLR 160 (185)
T ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHCCCCCCCChhHHHHHHHHHHHHhHHhcCcccCCCCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCcc
Q 000688 349 GIDDGKDLPEEYLGVLYDQIVKNEI 373 (1350)
Q Consensus 349 g~~~~~d~~~~~L~~iY~~I~~~~i 373 (1350)
|+++|+++|+++|++||++|+.+||
T Consensus 161 ~~~~~~~~~~~~L~~iY~~I~~~~~ 185 (185)
T cd00171 161 GINDGEDFPREFLKELYDSIKNNEI 185 (185)
T ss_pred cccCCCCCCHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999986
No 7
>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ]. The 3D structure of the domain displays several alpha-helices []. It was found to be associated with other domains involved in guanine nucleotide exchange (e.g., CDC25, Dbl) in mammalian factors [].; GO: 0005086 ARF guanyl-nucleotide exchange factor activity, 0032012 regulation of ARF protein signal transduction, 0005622 intracellular; PDB: 3SWV_A 3L8N_A 2R09_A 2R0D_B 1RE0_B 3LTL_A 1KU1_A 1XSZ_A 1XT0_B 1R8Q_E ....
Probab=100.00 E-value=1.4e-51 Score=443.43 Aligned_cols=185 Identities=53% Similarity=0.965 Sum_probs=169.9
Q ss_pred HHhHHHHHHHHHHhccCchhhHHHHHhcCCC--CCCHHHHHHHHhcCCCCChhHHHhhhcccchhHHHHHHHHHhcCCCC
Q 000688 189 RAYKIELQKGISLFNRKPSKGIEFLINSKKV--GDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFK 266 (1350)
Q Consensus 189 k~~K~~~~~~~~~Fn~~p~~gi~~l~~~~~i--~~~p~~ia~fl~~~~~l~k~~igeylg~~~~~~~~vl~~y~~~~df~ 266 (1350)
|++|..+.+|+.+||.+|++||+||++.|++ +++|++||+||+.+++|||.+||+|||+++++|.+||++|++.|||+
T Consensus 2 k~~k~~l~~~~~~FN~~p~~gi~~l~~~~~~~~~~~~~~iA~fL~~~~~l~k~~ige~Lg~~~~~n~~vL~~y~~~fdf~ 81 (190)
T PF01369_consen 2 KKRKRQLEEGVELFNKNPKKGIEYLIQNGFLENEDDPKSIAKFLFQTPGLDKKKIGEYLGKDNPFNRDVLKEYISLFDFS 81 (190)
T ss_dssp GHHHHHHHHHHHHHHHSHHHHHHHHHHTTSSTS-SSHHHHHHHHHHTTTS-HHHHHHHHTSSSHHHHHHHHHHHHTSS-T
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHhccchHHHHHHHHHHHHcCCc
Confidence 5678999999999999999999999999998 78999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHhccCCCCCchHHHHHHHHHHHHHHhhhCCC--CCCCccHHHHHHHHHHhhhhhhhhhhcCCCCCHHHHH
Q 000688 267 GMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPS--SFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFI 344 (1350)
Q Consensus 267 ~~~~~~alR~~l~~f~LpgE~q~idri~e~Fa~~y~~~np~--~f~~~d~~y~la~siimLntdlhn~~~k~kmt~~~Fi 344 (1350)
|+++++|||.||.+|+||||+|+|||||+.||++||+|||+ .|.|+|+||+|+||+||||||+|||++++|||+++|+
T Consensus 82 ~~~i~~ALR~~l~~f~LpgE~q~idril~~Fs~~y~~~Np~~~~~~~~d~v~~l~~slimLnTdlHn~~~~~kmt~~~Fi 161 (190)
T PF01369_consen 82 GMSIDEALRKFLSSFRLPGESQQIDRILEAFSERYYECNPNSTPFKSPDTVYILAYSLIMLNTDLHNPNIKKKMTKEDFI 161 (190)
T ss_dssp TS-HHHHHHHHCTSS-BTSSHHHHHHHHHHHHHHHHHHTTTGCSSSSHHHHHHHHHHHHHHHHHHH-TTSSSS--HHHHH
T ss_pred CccHHHHHHHhcceeeeccchHHHHHHHHHHHHHHHHhCCcccccccHhHHHHHHHHHHHHhHHHHhhccccCCcHHHHH
Confidence 99999999999999999999999999999999999999996 8999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCCHHHHHHHHHHHhhCcc
Q 000688 345 RNNRGIDDGKDLPEEYLGVLYDQIVKNEI 373 (1350)
Q Consensus 345 ~n~~g~~~~~d~~~~~L~~iY~~I~~~~i 373 (1350)
+|++|+++|+++|+++|++||++|+++||
T Consensus 162 ~~~~~~~~~~~~~~~~L~~iY~~I~~~~~ 190 (190)
T PF01369_consen 162 KNTRGIDDGKDIPEEFLESIYDSIKANPF 190 (190)
T ss_dssp HHTTTTBTTBS--HHHHHHHHHHHHHS--
T ss_pred HHhhcccCCCCCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999986
No 8
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=100.00 E-value=3.2e-51 Score=438.75 Aligned_cols=183 Identities=57% Similarity=0.946 Sum_probs=179.5
Q ss_pred hHHHHHHHHHHhccCchhhHHHHHhcCCCC-CCHHHHHHHHhcCCCCChhHHHhhhcccchhHHHHHHHHHhcCCCCCCC
Q 000688 191 YKIELQKGISLFNRKPSKGIEFLINSKKVG-DSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMD 269 (1350)
Q Consensus 191 ~K~~~~~~~~~Fn~~p~~gi~~l~~~~~i~-~~p~~ia~fl~~~~~l~k~~igeylg~~~~~~~~vl~~y~~~~df~~~~ 269 (1350)
+|..+.+|+.+||.+|++||+||++.|++. ++|++||+||+++++|||++||+|||+++++|.+||++|++.|||+|++
T Consensus 2 ~k~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~~~~~ia~fl~~~~~l~k~~ig~~l~~~~~~~~~vL~~y~~~f~f~~~~ 81 (187)
T smart00222 2 RKKLLSEGSVKFNDKPKKGIDSLQEKGFLAKDDPQDVADFLSKNEGLNKKAIGDYLGEHDEFNRLVLHAFVDLFDFSAKD 81 (187)
T ss_pred chHHHHHHHHHHccCHHHHHHHHHHcCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHcCCChHHHHHHHHHHHhcCcCCCc
Confidence 467799999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHhccCCCCCchHHHHHHHHHHHHHHhhhCCCCCC--CccHHHHHHHHHHhhhhhhhhhhcCCCCCHHHHHHhh
Q 000688 270 FGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFT--SADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNN 347 (1350)
Q Consensus 270 ~~~alR~~l~~f~LpgE~q~idri~e~Fa~~y~~~np~~f~--~~d~~y~la~siimLntdlhn~~~k~kmt~~~Fi~n~ 347 (1350)
||+|||.||.+|+||||+|+|||||++||++||+|||+.+. |+|++|+||||+||||||+|||++|+|||+++|++|+
T Consensus 82 i~~ALR~~l~~f~lpgE~q~Idrile~Fs~~y~~~N~~~~~~~~~d~~y~l~~s~lmLnTdlhn~~~k~kmt~~~Fi~~~ 161 (187)
T smart00222 82 LDQALREFLESFRLPGEAQKIDRLLEAFSSRYCECNPSVFSKLNADAAYTLAYSLIMLNTDLHNPNVKKKMTLEDFIKNV 161 (187)
T ss_pred HHHHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHCCCccCCCChhHHHHHHHHHHHHhHHhcCCccCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999987 9999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHHhhCcc
Q 000688 348 RGIDDGKDLPEEYLGVLYDQIVKNEI 373 (1350)
Q Consensus 348 ~g~~~~~d~~~~~L~~iY~~I~~~~i 373 (1350)
+|+++|.++|+++|++||++|+.+||
T Consensus 162 ~~~~~~~~~~~~~L~~iY~~I~~~~i 187 (187)
T smart00222 162 RGSNDGEDLPREFLEELYDSIKNNEI 187 (187)
T ss_pred hccCCCCCCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999986
No 9
>KOG0931 consensus Predicted guanine nucleotide exchange factor, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-50 Score=450.93 Aligned_cols=194 Identities=44% Similarity=0.813 Sum_probs=185.9
Q ss_pred HHHHHHHHHHhccCchhhHHHHHhcCCCCCCHHHHHHHHhcCCCCChhHHHhhhccc-chhHHHHHHHHHhcCCCCCCCc
Q 000688 192 KIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGER-EEFSLKVMHAYVDSFNFKGMDF 270 (1350)
Q Consensus 192 K~~~~~~~~~Fn~~p~~gi~~l~~~~~i~~~p~~ia~fl~~~~~l~k~~igeylg~~-~~~~~~vl~~y~~~~df~~~~~ 270 (1350)
|....-|..+||.||.|||+||++.||++++|..+|+||+...||+|+|||||||.+ ++||..||+++|+.+||++|.+
T Consensus 198 kr~YriGlnlfn~kPekGvQ~Li~rGFv~dtPvgvAhfllqRkGLSrqMIGEflGn~~kqfnrdVLdcvvdemDfssmel 277 (627)
T KOG0931|consen 198 KRHYRIGLNLFNKKPEKGVQYLIERGFVPDTPVGVAHFLLQRKGLSRQMIGEFLGNRQKQFNRDVLDCVVDEMDFSSMEL 277 (627)
T ss_pred HHHhhhccchhcCCcchhhhhhhhhcccCCCchHHHHHHHhhccchHHHHHHHhccccchhhhHHHHHHHhhhccccchH
Confidence 555666999999999999999999999999999999999999999999999999984 7899999999999999999999
Q ss_pred hHHHHHHhccCCCCCchHHHHHHHHHHHHHHhhhCCC---CCCCccHHHHHHHHHHhhhhhhhhhhcC--CCCCHHHHHH
Q 000688 271 GHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPS---SFTSADTAYVLAYSVIMLNTDAHNSMVK--DKMTKADFIR 345 (1350)
Q Consensus 271 ~~alR~~l~~f~LpgE~q~idri~e~Fa~~y~~~np~---~f~~~d~~y~la~siimLntdlhn~~~k--~kmt~~~Fi~ 345 (1350)
|+|||.|...||+|||||||||++|+||.|||.|||. .|.|.|++|+|||+|||||||+|+|||| +||+++||||
T Consensus 278 DeALRKfqahirvqgEAqKveRlIeAFsqrYc~cNP~~v~qfrnpDTIfiLaFAIIlLNTDmySPnVKperkM~leDFik 357 (627)
T KOG0931|consen 278 DEALRKFQAHIRVQGEAQKVERLIEAFSQRYCKCNPKVVRQFRNPDTIFILAFAIILLNTDMYSPNVKPERKMKLEDFIK 357 (627)
T ss_pred HHHHHHHHHHeecccHHHHHHHHHHHHHHHHhccCHHHHhhccCCCeehHHHHHHHHhcccccCCCCCHHHhhhHHHHHH
Confidence 9999999999999999999999999999999999998 4999999999999999999999999999 8999999999
Q ss_pred hhcCCCCCCCCCHHHHHHHHHHHhhCcccccCCCCCchhh
Q 000688 346 NNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSSAPESK 385 (1350)
Q Consensus 346 n~~g~~~~~d~~~~~L~~iY~~I~~~~i~~~~~~~~~~~~ 385 (1350)
|.||.|+|.|+|++.|.+||++|+++|++..+||....++
T Consensus 358 NLRGvDnGeDIpRell~GIYeRIqk~ELktndDHVsqVqk 397 (627)
T KOG0931|consen 358 NLRGVDNGEDIPRELLVGIYERIQKRELKTNDDHVSQVQK 397 (627)
T ss_pred hccCCCCcccCcHHHHHHHHHHHHHhhcccCcchHHHHHH
Confidence 9999999999999999999999999999999998765443
No 10
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=8.2e-44 Score=438.55 Aligned_cols=628 Identities=16% Similarity=0.160 Sum_probs=446.5
Q ss_pred eccchhhHHHHHHHhHHHHHHHHHhhhhcCCcHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHhccCC-------
Q 000688 440 AVTDPGILRFMVEVCWGPMLAAFSVTLDQSDDKLATNQCLQGFRHAVHVTAVMGMQTQRDAFVTSVAKFTYLH------- 512 (1350)
Q Consensus 440 ~~~~~~~~~~Mfe~~W~~ilaals~~l~~s~D~~~~~~~L~g~~~~i~ia~~f~l~~~rdafl~sL~kft~L~------- 512 (1350)
..+..+..+.|....|..++++++..+.++.|+.+.+..+.+...++..+|..+-+++.++++.+||+|+...
T Consensus 518 ~~~kLe~i~~a~~snq~tildalks~l~~st~e~is~qvl~s~stltsa~~~~~Ade~lna~~~~l~~~~~~s~r~vs~l 597 (1610)
T KOG1848|consen 518 RQTKLEIIFDAVLSNQSTILDALKSTLPESTDEIISAQVLASYSTLTSACGRCSADEVLNALKEALVPFKDFSPRPVSRL 597 (1610)
T ss_pred cceeehhHHHHHhhccccHHHHhhhhccccccchhhHHHHhchHHHHhccccccchhHHHHHHHhhCCcccCCccHHHHH
Confidence 3455677888899999999999999999999999999999999999999999999999999999999997521
Q ss_pred ----------------------------------------------CccccchhhHHHHHHHHHHHHhcCCchhhhhHHH
Q 000688 513 ----------------------------------------------CAADMKQKNVDAVKAIISIAIEDGNHLQEAWEHI 546 (1350)
Q Consensus 513 ----------------------------------------------~~~~~~~Knv~air~Ll~la~~~G~~L~~sW~~I 546 (1350)
++..++.||++++|+.++++..+-+.++.+|.++
T Consensus 598 r~l~s~Spv~gr~~~sew~~dfetw~~~t~~~~~~p~~~~~s~ss~~~v~lT~snvqa~rsf~t~~~~~~~sy~~sw~ll 677 (1610)
T KOG1848|consen 598 RCLNSESPVVGRKMGSEWKIDFETWDKATIILNRSPTSKHLSTSSLNRVNLTNSNVQASRSFSTLMDYELVSYKNSWSLL 677 (1610)
T ss_pred hhccccCccccccCCcceEEEEeeccceeeEecCCCCCccccccCCCccccccchHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 0123567999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccchhhhhhcccCCCCCccccCCCCCCcchhhhcCCccccCCcCCCCCCCCCHH
Q 000688 547 LTCLSRIEHLQLLGEGAPTDASFLTVSNVEADEKTQKSMGFPSLKKKGTLQNPSVMAVVRGGSYDSTTVGVNSPGLVTPE 626 (1350)
Q Consensus 547 L~~is~le~lqli~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ss~~~~~~~~~~t~~ 626 (1350)
+.+.+.|.+ ..+.-|...... .+. + .+.+|-.++.+
T Consensus 678 m~t~~~ls~---~~~m~p~qt~l~----------------------------------v~t------~-~~~hp~~p~~~ 713 (1610)
T KOG1848|consen 678 MYTTSSLSQ---PAYMEPLQTLLA----------------------------------VIT------S-SSVHPIQPLTA 713 (1610)
T ss_pred HHHHHHhcc---hhhcCHHHhhHH----------------------------------HHh------c-CCCCCCCcchh
Confidence 988755442 111111100000 000 0 01111111111
Q ss_pred HHHHHhhhhhhhhhhhhcchhHHHHhcccCChHHHHHHHHHHHHhchhhhcCC-----CCCCc--chHHHHHHHHhhccc
Q 000688 627 QINHFIANLNLLDQIGNFELNHVFAHSQRLNSEAIVAFVKALCKVSISELQSP-----TDPRV--FSLTKLVEIAHYNMN 699 (1350)
Q Consensus 627 ei~~~~~~~~~~~~i~~~~id~lF~~S~~L~~eai~~fv~AL~~vS~eel~~~-----~~pr~--F~L~kLveva~~Nm~ 699 (1350)
-. ....+. .+.+.-.+++|.+++.++..+....++||.+++.+-+... ..-|. +-++-.+-.+..|--
T Consensus 714 ~~-~~ynd~----~~lssl~~~v~~~~a~~~~ss~~slL~ali~ls~~sli~~~~~~~sslr~~~~~l~v~~~~~~l~e~ 788 (1610)
T KOG1848|consen 714 PR-QSYNDD----LLLSSLKNSVYKTSANRSISSGISLLRALIELSYSSLILETVCSCSSLRFLDSKLDVSGWSLILKEL 788 (1610)
T ss_pred hH-HHHHHH----HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhhccccccccccchhhhhHHHHHHHHh
Confidence 00 001111 1122347889999999999999999999999998754311 11121 233333333333322
Q ss_pred ccccchhhhHHHHHHHHHHhcCCccHhHHHHHHHHHHHHHHHhcchhhhhhhhhh-------hhhhhhHHHHHhcCCcHH
Q 000688 700 RIRLVWSRMWNVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQ-------NEFLRPFVIIMQKSGSAE 772 (1350)
Q Consensus 700 Ri~~~W~~iW~~l~~~f~~v~~~~n~~v~~~AidsLrqLs~kfLe~eEL~~f~fQ-------~~fL~Pf~~im~~~~~~e 772 (1350)
|-. .-|..-.+||.+.+||--.++..- +++.++.- .-.+.+.+| .+++-.++.....++..|
T Consensus 789 snq----~~~~naa~~l~t~~n~vl~s~~~~-~asals~d------a~~dv~sk~ti~~es~~~~l~sl~v~~~s~~~~e 857 (1610)
T KOG1848|consen 789 SNQ----FKIINAAPELRTRANNVLASILVD-VASALSND------ASPDVYSKQTIFFESLGMLLPSLEVSDNSSRGVE 857 (1610)
T ss_pred hhH----HHHHHhHHHHHHHHHHHHHHHHhh-hhhhhhcc------cccchhccceeeHhhhHHHHHHHHHHHhcCccce
Confidence 222 224445566666655433222211 12222210 011222333 344444444455677889
Q ss_pred HHHHHHHHHHHHHHhccccccCChHHHHHHHHHhhcc---chHHHHHHHHHHHHHHHHhhcCCccccccchHHHHHHHHH
Q 000688 773 IRELIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAAD---ERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLL 849 (1350)
Q Consensus 773 Ire~iL~cl~~~l~~~~~~I~SGWk~IF~il~~aa~~---~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~ 849 (1350)
+|---++||-.++++.|+.+-+||..||++|+.++.. ++.++|++||+++++|++||++++| .+|+.+||+++.
T Consensus 858 vr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp---~sci~~lidtl~ 934 (1610)
T KOG1848|consen 858 VRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLP---TSCILDLIDTLL 934 (1610)
T ss_pred eeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCC---hHHHHHHHHHHH
Confidence 9999999999999999999999999999999987653 4789999999999999999999999 799999999999
Q ss_pred HHHcCCCCccccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCccc--CCCCcccchhhHHHHHHHHhhhc
Q 000688 850 TFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQ--SFSDKDDNSSFWVPLLTGLSKLT 927 (1350)
Q Consensus 850 ~F~~~~~d~niSL~Ai~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lW~pLL~~L~~l~ 927 (1350)
.|++|+.|+||||+||++||.++|+++.......+. +..+. +.+++. ...+..-++.+|+.||..|+++|
T Consensus 935 ~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed----~~~~~----~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~ 1006 (1610)
T KOG1848|consen 935 VFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSED----SCAYN----SVEDLYSSMKSKEILPEVLWIMLLVHLADLC 1006 (1610)
T ss_pred HHHhhhccccccHHHHHHHHHHHHHHHhhhhccchh----hhhhc----chhhhcccccchhhhhhHHHHHHHHHHHHHh
Confidence 999999999999999999999999998632221111 11111 011111 11122347899999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhHhhhhcccCCCCCCCCCCCCCCCCCCcccccHHHhHHH
Q 000688 928 SDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAI 1007 (1350)
Q Consensus 928 ~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~eT~~~ 1007 (1350)
.|+|+||||+|.||||+|+.+||+.|++..|+.|||.|++|+++...... .++| +..+.+++|. ||+++
T Consensus 1007 ~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~----~~ew------ngkeiqkqwt-et~~l 1075 (1610)
T KOG1848|consen 1007 EDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQN----VSEW------NGKEIQKQWT-ETSCL 1075 (1610)
T ss_pred ccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccc----hhhh------cchhHhhhhh-hhhhh
Confidence 99999999999999999999999999999999999999999999876533 1222 2244469997 99999
Q ss_pred HHHHHHHHHHHHHHhHH------hhHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHh--hCCCCCHHHHHHHHHHHHHH
Q 000688 1008 GAECLVDIFICFFDVVR------SQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGE--LGSRLSQDEWREILLALKET 1079 (1350)
Q Consensus 1008 al~~l~~lf~~yf~~l~------~~l~~~L~lL~~~i~~~~~~la~ig~~~l~~Ll~~--~~~~f~~~~W~~i~~~~~~l 1079 (1350)
+++|++++|..||..+. ..|..+|++|.+.++..+.+++-.++.|||+++.+ ...+.+...-.+++..|..
T Consensus 1076 tisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~sii~~~~ln~~~~~k~n~vf~~- 1154 (1610)
T KOG1848|consen 1076 TISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFSIIEFGKLNATFTLKINLVFIN- 1154 (1610)
T ss_pred hHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHHhhhccccchHHHHhhhhhhh-
Confidence 99999999999998765 46999999999999999999999999999999998 4466776666677776665
Q ss_pred HhhchhhHHHhhhccccccCCCCCCccccccccCCCCCCCCCcchhhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHH--
Q 000688 1080 TASTLPSFVKVLRTMNDIEIPNTSQSYADMEMDSDHGSINDNIDEDNLQTAAYVVSRMKSHITLQLLSVQVAANLYKL-- 1157 (1350)
Q Consensus 1080 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~cvlqLllIq~~~eL~~~-- 1157 (1350)
++.+++... ..+.+ ..++| -++++.++.+.|+.
T Consensus 1155 y~~~~~~~s------------------------------------sas~~-------t~~kv--~~eiltgl~~~vqs~s 1189 (1610)
T KOG1848|consen 1155 YGRFCEVSS------------------------------------SASER-------TLAKV--SQEILTGLIESVQSLS 1189 (1610)
T ss_pred Hhhhccccc------------------------------------ccchh-------HHHHH--HHHHHhhhHHHHHHHH
Confidence 555553210 00011 11233 35667777777664
Q ss_pred HhccCCHHHHHHHHHHHHHH------hhhHhhhcCCHHHHHHHHH
Q 000688 1158 HLRLLSTTNVKILLDIFSSI------ASHAHELNSELVLQKKLQR 1196 (1350)
Q Consensus 1158 ~~~~l~~~~l~~ll~~L~~s------~~fA~~fN~~~~Lr~~L~k 1196 (1350)
.++....+++...+..+.+. ..|+.+...++ ++..+..
T Consensus 1190 k~d~~~~e~~~~slll~~kai~yp~~~~ft~d~hvps-vq~avls 1233 (1610)
T KOG1848|consen 1190 KADNFGIEEIKDSLLLVRKAIFYPESTSFTLDVHVPS-VQLAVLS 1233 (1610)
T ss_pred hhcchhHHHHHHHHHHhhhccccCCCchhhhhccCCh-HHHHHHh
Confidence 45677888888888888884 67777777755 4444443
No 11
>KOG1846 consensus Uncharacterized conserved protein, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-39 Score=377.65 Aligned_cols=958 Identities=17% Similarity=0.226 Sum_probs=603.5
Q ss_pred hHHHhhhcccc----hhHHHHHHHHHhcCCCCCCCchHHHHHHhccCC--CC-----CchHHHHHHHHHHHHHHhhh---
Q 000688 239 TMIGDYLGERE----EFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFR--LP-----GEAQKIDRIMEKFAERYCKC--- 304 (1350)
Q Consensus 239 ~~igeylg~~~----~~~~~vl~~y~~~~df~~~~~~~alR~~l~~f~--Lp-----gE~q~idri~e~Fa~~y~~~--- 304 (1350)
+++-+-+|+.. ..+++.++.-|.+.|= +.= -+-|.|++... +| .-+-..|.++..||-++|+.
T Consensus 347 rmlmdCiaecslpqaaLSidalKnivamlde--adQ-hSahkFfqdlEgllpkLiadsfscedDTalnnFalkccegvsd 423 (1777)
T KOG1846|consen 347 RMLMDCIAECSLPQAALSIDALKNIVAMLDE--ADQ-HSAHKFFQDLEGLLPKLIADSFSCEDDTALNNFALKCCEGVSD 423 (1777)
T ss_pred HHHHHHHHhccCchHHhhHHHHHHHHHHHhh--HHH-HHHHHHHHhhhhhHHHHHhhccchhhHHHHHHHHHHHhcCccc
Confidence 34555555532 3455566655544331 111 12355665543 33 23468899999999999975
Q ss_pred --CCC----------CCCCccHHHHHHHHHHhhhh-hhhhhhc-----C----CCCCHHHHHHhhcCCCCCCCCCHHHHH
Q 000688 305 --NPS----------SFTSADTAYVLAYSVIMLNT-DAHNSMV-----K----DKMTKADFIRNNRGIDDGKDLPEEYLG 362 (1350)
Q Consensus 305 --np~----------~f~~~d~~y~la~siimLnt-dlhn~~~-----k----~kmt~~~Fi~n~~g~~~~~d~~~~~L~ 362 (1350)
.|+ ...|||.-|..|---.++|. .+-.... | .+-|..+|++....-.-.--+.+.+.+
T Consensus 424 icspdeDgensfdfqmlmnAdedpmAAhcakLenkfklahgatrrssekdeslapgtaKdFmkalqeSgldiiaapanie 503 (1777)
T KOG1846|consen 424 ICSPDEDGENSFDFQMLMNADEDPMAAHCAKLENKFKLAHGATRRSSEKDESLAPGTAKDFMKALQESGLDIIAAPANIE 503 (1777)
T ss_pred ccCCCCCccchhhHHHhcCCCcchHHHHHHHHHHHhccCcccccchhccCcccCcchHHHHHHHHHhcCceeeeccccHH
Confidence 343 23588888888887777772 2221111 1 266889999988643333456788999
Q ss_pred HHHHHHhhCcccccC-------CCCCchhhhhhhhhhhcccccchhhhhcchHHHHHhhhhHHHHHH----HHHHHhccc
Q 000688 363 VLYDQIVKNEIKMNA-------DSSAPESKQANSLNKLLGLDGILNLVIGKQTEEKALGANGLLIRR----IQEQFKSKS 431 (1350)
Q Consensus 363 ~iY~~I~~~~i~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 431 (1350)
+||+.|.....-..+ |...+..+.. ...+|....- +..+ ++..++.+ .-+.++.+.
T Consensus 504 eideaiLdfnmlfeagfcgshaDaskplikil---------qdflntdagl--esaa--aggcliahaaTeslealkkri 570 (1777)
T KOG1846|consen 504 EIDEAILDFNMLFEAGFCGSHADASKPLIKIL---------QDFLNTDAGL--ESAA--AGGCLIAHAATESLEALKKRI 570 (1777)
T ss_pred HHHHHHHhhhhccccccccCchhccccHHHHH---------HHhhhhhHHH--HHHh--hcceeeccccccCHHHHhhhc
Confidence 999999987654322 1111111100 0011110000 0000 01111100 000111111
Q ss_pred CCCCCceEeccchhhHHHHHHHhHHHHHHHHHhhhhc-----C----------------------CcHHHHHHHHHHHHH
Q 000688 432 GKSESLYHAVTDPGILRFMVEVCWGPMLAAFSVTLDQ-----S----------------------DDKLATNQCLQGFRH 484 (1350)
Q Consensus 432 ~~~~~~f~~~~~~~~~~~Mfe~~W~~ilaals~~l~~-----s----------------------~D~~~~~~~L~g~~~ 484 (1350)
.. + ..+.++.+.+...-.+|..+..+++.+.-. . -.++....-.+|+++
T Consensus 571 dd--S--gcVagVAfarldkVfcnkkliDalsspilpglmagindfdafakGlladgeKekniKeRqddaeCmeedglak 646 (1777)
T KOG1846|consen 571 DD--S--GCVAGVAFARLDKVFCNKKLIDALSSPILPGLMAGINDFDAFAKGLLADGEKEKNIKERQDDAECMEEDGLAK 646 (1777)
T ss_pred cc--c--cceeehhhhHHHHhhhhhhhhhhhccccchhhhhcccchHHHHhhhhhhhHHHhhhhhhhcchhhhchhhHHH
Confidence 11 1 134566666666667888888887766211 1 112344556899999
Q ss_pred HHHHHHhhCCchHHHHHHHHHHHhccCCC---------ccc-----------------------cchhhHHHHHHHHHHH
Q 000688 485 AVHVTAVMGMQTQRDAFVTSVAKFTYLHC---------AAD-----------------------MKQKNVDAVKAIISIA 532 (1350)
Q Consensus 485 ~i~ia~~f~l~~~rdafl~sL~kft~L~~---------~~~-----------------------~~~Knv~air~Ll~la 532 (1350)
+++++|..|....++..++-|+-...-.. |.+ ...-++.|+.+.|...
T Consensus 647 aarlscaagvaaicasalaflAaaecrkeeeeeREAiepSdagmqnkcaVaQkLelegkcggifehlaetlCceadLrdd 726 (1777)
T KOG1846|consen 647 AARLSCAAGVAAICASALAFLAAAECRKEEEEEREAIEPSDAGMQNKCAVAQKLELEGKCGGIFEHLAETLCCEADLRDD 726 (1777)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcChHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhch
Confidence 99999999999888888888776644321 110 0123456778888999
Q ss_pred HhcCCchhhhhHHHHHHHHHHHHHHHh--cCCCCCCccccc--cccchhhhh--------hcccCCCCCccccCCCC---
Q 000688 533 IEDGNHLQEAWEHILTCLSRIEHLQLL--GEGAPTDASFLT--VSNVEADEK--------TQKSMGFPSLKKKGTLQ--- 597 (1350)
Q Consensus 533 ~~~G~~L~~sW~~IL~~is~le~lqli--~~g~~~~~~~~~--~~~~~~~~~--------~~~~~~~~~~~~~~~~~--- 597 (1350)
...|.+-.++|+++.+..-.+-.|+.. ..|....+.-.. .++.-...+ -.+++.....++....+
T Consensus 727 aeaGshnddcqkhtcrscEhlgalehnhdeagaaihalscskcseqkaegeagilGdaeCeekPpehkferqgredkead 806 (1777)
T KOG1846|consen 727 AEAGSHNDDCQKHTCRSCEHLGALEHNHDEAGAAIHALSCSKCSEQKAEGEAGILGDAECEEKPPEHKFERQGREDKEAD 806 (1777)
T ss_pred hhhcCCCCccccccchHHHHHHHHHhhcccccccCCccchhccchhhhhccccccCChhhcCCCcccChhhcCccccccc
Confidence 999999999999999876554444432 222210000000 010000000 00000000000000000
Q ss_pred --CCc------------chhhhcCCccccCCcCCCCCCCCCHHHHHHHhhhhhhhhhhhhcchhHHHHhc-ccCChHHHH
Q 000688 598 --NPS------------VMAVVRGGSYDSTTVGVNSPGLVTPEQINHFIANLNLLDQIGNFELNHVFAHS-QRLNSEAIV 662 (1350)
Q Consensus 598 --~~~------------~~~~~~~~s~~ss~~~~~~~~~~t~~ei~~~~~~~~~~~~i~~~~id~lF~~S-~~L~~eai~ 662 (1350)
.+. ..+..|+||..|.. -.+. +-|..+..+||+|+.. ..|..-|+.
T Consensus 807 keeklsaaDlsiEgalGdapdfrggslmSgh------------Saak-------aictLiakaDRffedacdeLcLmALg 867 (1777)
T KOG1846|consen 807 KEEKLSAADLSIEGALGDAPDFRGGSLMSGH------------SAAK-------AICTLIAKADRFFEDACDELCLMALG 867 (1777)
T ss_pred ccccccHHhhhhccccCCCcccccccccccc------------hHHH-------HHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 000 01112333332211 1111 2344456799999987 889999999
Q ss_pred HHHHHHHHhchhhhcCC---------CCC--------C--cchHHHHHHHHh---hcccccccchhhhHHHHHHHHHHh-
Q 000688 663 AFVKALCKVSISELQSP---------TDP--------R--VFSLTKLVEIAH---YNMNRIRLVWSRMWNVLSDFFVSV- 719 (1350)
Q Consensus 663 ~fv~AL~~vS~eel~~~---------~~p--------r--~F~L~kLveva~---~Nm~Ri~~~W~~iW~~l~~~f~~v- 719 (1350)
+|.-|+...|...+..+ .-| | ...|-||++... ...-|+.++-..+|..+..||+++
T Consensus 868 dfcvaiikaSenqlFhsvTaqkdihLaaPgevkstqdrksalhLfRigdaiirilrhkaRPLlHqMfcwpLVaaHfVeas 947 (1777)
T KOG1846|consen 868 DFCVAIIKASENQLFHSVTAQKDIHLAAPGEVKSTQDRKSALHLFRIGDAIIRILRHKARPLLHQMFCWPLVAAHFVEAS 947 (1777)
T ss_pred HHHHHHHHhhhcceeeeeccceeeEeecCcccccchhhHHHHHHHHHHHHHHHHHHhcccchhHHHHHHhhhhHHHHhHH
Confidence 99999999998876532 112 2 367788887332 223489999999999999999999
Q ss_pred cCCccHhHHHHHHHHHHHHHHHhcc-hhhhhhhhhhhhhhhhHHHHHhc-CCcHHHHHHHHHHHHHHHHhccccccCChH
Q 000688 720 GLSENLSVAIFVMDSLRQLAMKFLE-REELANYNFQNEFLRPFVIIMQK-SGSAEIRELIIRCISQMVLSRVSNVKSGWK 797 (1350)
Q Consensus 720 ~~~~n~~v~~~AidsLrqLs~kfLe-~eEL~~f~fQ~~fL~Pf~~im~~-~~~~eIre~iL~cl~~~l~~~~~~I~SGWk 797 (1350)
+||...+|+..|+..+..+.++.|. ..|-++|+|.+.++.||+.+|+. +|+.|+++++|..+.++|+.+++.|.||||
T Consensus 948 aCdkErhvSqiAaSaiadilTelLtdwnEpPgfhFNeaLfgPFeramclElCdEdtkdQflsSigeLVescadkIgSGWk 1027 (1777)
T KOG1846|consen 948 ACDKERHVSQIAASAIADILTELLTDWNEPPGFHFNEALFGPFERAMCLELCDEDTKDQFLSSIGELVESCADKIGSGWK 1027 (1777)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCcchhHhhhchHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 8999999999999999999888884 67889999999999999999984 699999999999999999999999999999
Q ss_pred HHHHHHHHhhccchHH----HH---------HHHHHHHHHH-HHhhcCCccccccchHHHHHHHHHHHHcCCC-------
Q 000688 798 SVFSIFTAAAADERKN----IV---------LLAFETMEKI-VREYFPHITETESTTFTDCVKCLLTFTNSRF------- 856 (1350)
Q Consensus 798 ~IF~il~~aa~~~~~~----iV---------~~aF~~l~~I-~~d~l~~l~~~~~~~f~d~I~cL~~F~~~~~------- 856 (1350)
++|+.|.++...+..+ ++ .-+|++++.- ..|..+.+ .++...||.|+.+|.++-.
T Consensus 1028 PLFgaLeaVgggnksemkaaldedysmgKghacafDVfeafLniDnipVf----anaalecimClmkflkgleevDckei 1103 (1777)
T KOG1846|consen 1028 PLFGALEAVGGGNKSEMKAALDEDYSMGKGHACAFDVFEAFLNIDNIPVF----ANAALECIMCLMKFLKGLEEVDCKEI 1103 (1777)
T ss_pred hhHHHHHHhcCCcHHHHHHHHhcccccccccchhhHHHHHHhccCchHhH----HHHHHHHHHHHHHHHhcccccccchh
Confidence 9999999987543221 22 2477777633 23444433 5889999999999986532
Q ss_pred ----------CccccHHHHHHHHHHHHHhhcCC---ccc----ccCCCCCC---CCCCCCCCCCCc-------ccCCCCc
Q 000688 857 ----------NSDVCLNAIAFLRFCAVKLADGG---LVC----NEKGSVDG---SSSPPVNDNAPD-------LQSFSDK 909 (1350)
Q Consensus 857 ----------d~niSL~Ai~~l~~~~~~L~~~~---~~~----~~~~~~~~---~~~~~~~~~~~~-------~~~~~~~ 909 (1350)
..+++|.|+++|.+|..-++.-+ .+. ......+. .......++++. ...+.+.
T Consensus 1104 gdcapapgapstdKOGaALdlLpncsqLiakiYkmPhkPifhlghladLprkcldqsamdeDgIEsphgpfpvledfddd 1183 (1777)
T KOG1846|consen 1104 GDCAPAPGAPSTDLCLAALDLLPNCSQLIAKIYKMPHKPIFHLGHLADLPRKCLDQSAMDEDGIESPHGPFPVLEDFDDD 1183 (1777)
T ss_pred cccCCCCCCCcchhhHHHHHHHHhHHHHHHHHHcCCCchhhhhhhhhcchHHHHhhhhcccCCccCCCCCcccccccccc
Confidence 24678999999999987665321 100 00000000 000000001110 1122233
Q ss_pred ccchhhHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHHHhHhhhhcccCCCCCCCCCCC
Q 000688 910 DDNSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLF-PRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSP 988 (1350)
Q Consensus 910 ~~~~~lW~pLL~~L~~l~~d~R~eVR~~AlqtLF~iL~~~G~~f-~~~~W~~i~~~VLfPi~~~l~~~~~~~~~~~~~~~ 988 (1350)
.....+|+.+|..+.....++.+.-+..-+..+|++|....... ++.+...+...+|+|.+..|..+.
T Consensus 1184 iagiElfiiflEQicaallncppnhQknlLDlifeLLrDiskkPlGadfGgvamsaliLPvmqkWiRRl----------- 1252 (1777)
T KOG1846|consen 1184 IAGIELFIIFLEQICAALLNCPPNHQKNLLDLIFELLRDISKKPLGADFGGVAMSALILPVMQKWIRRL----------- 1252 (1777)
T ss_pred chhHHHHHHHHHHHHHHHhcCCcccCccHHHHHHHHHHHhccCCCCCCCccchhhHHHHHHHHHHHHHh-----------
Confidence 34678999999999999888889999999999999999876544 888888999999999999998743
Q ss_pred CCCCCCCcccccHHH--hHHHHHHHHHHHHHHHHH-------------hHHhhHHHHHHHHHHhhccCCcchhHHHHHHH
Q 000688 989 TSHSPLSEGSTWDSE--TAAIGAECLVDIFICFFD-------------VVRSQLPGVVSILTGFIRSPIQGPASTGVAAL 1053 (1350)
Q Consensus 989 ~~~~~~~~~~~W~~e--T~~~al~~l~~lf~~yf~-------------~l~~~l~~~L~lL~~~i~~~~~~la~ig~~~l 1053 (1350)
+.+.+.|.-. -..+|+..-+.+...+.+ .+..++.+.+.+...|...+.+.+.++|++|.
T Consensus 1253 -----dkdesywdmakaifKhaIGaccelVidhielekhSswddRlerdIcalikdcfefdkaCaaaPaefiliagcsci 1327 (1777)
T KOG1846|consen 1253 -----DKDESYWDMAKAIFKHAIGACCELVIDHIELEKHSSWDDRLERDICALIKDCFEFDKACAAAPAEFILIAGCSCI 1327 (1777)
T ss_pred -----chhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHhhcchh
Confidence 4466778633 456777766666555442 34567889999999999999999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHHHhhchhhHHHhhhcc----ccc---------cCCCCCCccc-ccc---------
Q 000688 1054 LHLAGELGSRLSQDEWREILLALKETTASTLPSFVKVLRTM----NDI---------EIPNTSQSYA-DME--------- 1110 (1350)
Q Consensus 1054 ~~Ll~~~~~~f~~~~W~~i~~~~~~l~~~t~~~~~~~~~~~----~~~---------~~~~~~~~~~-~~~--------- 1110 (1350)
+.++...|++|++++|+..|.++.++|..|+.+..+++... .+. ..|..+.+.. +.|
T Consensus 1328 ryvlvtagpkFseemWniaccaLadAfsasLkhVkdLlgcFhrgsedenGdgcqigdaapSsnPgaeaerqlIaAmaqls 1407 (1777)
T KOG1846|consen 1328 RYVLVTAGPKFSEEMWNIACCALADAFSASLKHVKDLLGCFHRGSEDENGDGCQIGDAAPSSNPGAEAERQLIAAMAQLS 1407 (1777)
T ss_pred eeeeeccCccccHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhcCCcccCCCcceeccccCCCCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887765421 111 1122222211 111
Q ss_pred ---ccCCCCCCCCC---------------cchhhhh---hhhHH--hhhhhhHHHHHHHHHHHHHHHH------------
Q 000688 1111 ---MDSDHGSINDN---------------IDEDNLQ---TAAYV--VSRMKSHITLQLLSVQVAANLY------------ 1155 (1350)
Q Consensus 1111 ---~~~~~~~~~~~---------------~~~~~~~---~~~~~--~~~~k~~cvlqLllIq~~~eL~------------ 1155 (1350)
..+..+..+.+ .+++|.. +..|. ++...+||++..++-..+-+=+
T Consensus 1408 fmkdkqcgpkkpeeeDhaqgcaLIielhgadkpnghtkhrlefheIisSLfsHclLLQliadiLLeEdskgPklgaekig 1487 (1777)
T KOG1846|consen 1408 FMKDKQCGPKKPEEEDHAQGCALIIELHGADKPNGHTKHRLEFHEIISSLFSHCLLLQLIADILLEEDSKGPKLGAEKIG 1487 (1777)
T ss_pred HHHhhccCCCCCcchhhhhcceeeEecCCccCCCCcccceeeHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Confidence 01111111100 0112221 22232 4566788864333222222211
Q ss_pred -------HHHhccCCHHHHHHHHHHHHHHhhhHhhhcCCHHHHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHHhhc
Q 000688 1156 -------KLHLRLLSTTNVKILLDIFSSIASHAHELNSELVLQKKLQRVCLVLELSDPPMVHFENESYQTYLNFLRDSLT 1228 (1350)
Q Consensus 1156 -------~~~~~~l~~~~l~~ll~~L~~s~~fA~~fN~~~~Lr~~L~k~g~~~~~~~PnLlkQE~~S~~~~l~iL~~~~~ 1228 (1350)
..+.++|+.+.+..+.++|++|++.|+||++.+.|...|-|...+-+ ..|||||-..|+..|.+.|-....
T Consensus 1488 qtpeadlagflryiddqilaiifdiLldSseTaldFDsrPalgcLLkkmlGigg--aANLlkasalsfnilfhalscavL 1565 (1777)
T KOG1846|consen 1488 QTPEADLAGFLRYIDDQILAIIFDILLDSSETALDFDSRPALGCLLKKMLGIGG--AANLLKASALSFNILFHALSCAVL 1565 (1777)
T ss_pred cCCCcchhhHHHhcchhHHHHHHHHHhhhhhhhhccCCCccHHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12557899999999999999999999999999999999999877666 799999999999999888876554
Q ss_pred CCCCcchHHhHHHHHHHHHHHHHHHHHcc
Q 000688 1229 GNPSASEELNIESHLVEACEMILQMYLNC 1257 (1350)
Q Consensus 1229 d~~~~~~~~~~~~~L~~lc~~il~~y~~~ 1257 (1350)
-+...-...++...|++=-......-..|
T Consensus 1566 lnqeeiTaeqvkkeLfeddakatdSrqqc 1594 (1777)
T KOG1846|consen 1566 LNQEEITAEQVKKELFEDDAKATDSRQQC 1594 (1777)
T ss_pred hhHHHHHHHHHhhhhchhhhhhhcchhhc
Confidence 33332233445555555444444433333
No 12
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.3e-29 Score=285.90 Aligned_cols=154 Identities=36% Similarity=0.647 Sum_probs=149.1
Q ss_pred HHHHHHHHhcCCCCChhHHHhhhcccchhHHHHHHHHHhcCCCCCCCchHHHHHHhccCCCCCchHHHHHHHHHHHHHHh
Q 000688 223 PEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYC 302 (1350)
Q Consensus 223 p~~ia~fl~~~~~l~k~~igeylg~~~~~~~~vl~~y~~~~df~~~~~~~alR~~l~~f~LpgE~q~idri~e~Fa~~y~ 302 (1350)
...+|+=|+.-+|.-|..+..+||++++|+.-|..+|++.|+|.|+++|.|||.||+.|-|-||.|.-+|++-.|+.|||
T Consensus 307 A~rlArrLY~L~gf~~sdVA~~LgknNeFS~lVa~eYL~fF~Fsg~tlD~ALR~Flka~~L~GETqeRERvL~hFS~Ry~ 386 (774)
T KOG0932|consen 307 AARLARRLYRLEGFRKSDVARHLGKNNEFSRLVAEEYLSFFQFSGMTLDQALREFLKALELMGETQERERVLRHFSRRYF 386 (774)
T ss_pred HHHHHHHHHHhhCccHHHHHHHhcccchHHHHHHHHHHHHhhccCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHhh
Confidence 34688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCCCccHHHHHHHHHHhhhhhhhhhhcCCCCCHHHHHHhhcCCCCCCCCCHHHHHHHHHHHhhCccccc
Q 000688 303 KCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMN 376 (1350)
Q Consensus 303 ~~np~~f~~~d~~y~la~siimLntdlhn~~~k~kmt~~~Fi~n~~g~~~~~d~~~~~L~~iY~~I~~~~i~~~ 376 (1350)
+|||+.|.|.|.++.|..++|+||||||.+||-+|||.+|||.|..|+|+|.|||.|+|..+|++|+++.+...
T Consensus 387 ~CNP~~~~S~DgvHtLTCAlmLLNTDLHGhniGKkMtcqdFI~Nl~glndG~dF~kelLKaLy~SIKneklewA 460 (774)
T KOG0932|consen 387 QCNPDIFDSEDGVHTLTCALMLLNTDLHGHNIGKKMTCQDFITNLAGLNDGGDFPKELLKALYNSIKNEKLEWA 460 (774)
T ss_pred ccCccccccccchhHHHHHHHHHccccccccccccccHHHHHHHHhcccccCccHHHHHHHHHHHHhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999976543
No 13
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=99.86 E-value=1.7e-22 Score=188.72 Aligned_cols=86 Identities=53% Similarity=0.921 Sum_probs=84.0
Q ss_pred HHhcchhhhhhhhhhhhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCChHHHHHHHHHhhccchHHHHHHHH
Q 000688 740 MKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIVLLAF 819 (1350)
Q Consensus 740 ~kfLe~eEL~~f~fQ~~fL~Pf~~im~~~~~~eIre~iL~cl~~~l~~~~~~I~SGWk~IF~il~~aa~~~~~~iV~~aF 819 (1350)
|||++++||++|+||++||+||+.||.++++.+||++||+||.+||+++|++|+|||++||++|+.|+.+.++++|..||
T Consensus 1 ~kfl~~~El~~~~fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af 80 (86)
T PF09324_consen 1 MKFLEKEELSNFNFQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAF 80 (86)
T ss_pred CCccccccccccHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 000688 820 ETMEKI 825 (1350)
Q Consensus 820 ~~l~~I 825 (1350)
+++++|
T Consensus 81 ~~~~~I 86 (86)
T PF09324_consen 81 QIVQLI 86 (86)
T ss_pred HHHhhC
Confidence 999875
No 14
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=99.73 E-value=5.5e-18 Score=180.03 Aligned_cols=82 Identities=44% Similarity=0.818 Sum_probs=78.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHcCchhHHHHhHccCCCCCCh
Q 000688 1 MAVFQLQCSIFMSLLSKYRSGLKAEIGIFFPMLVLRVLENVLQPSFVQKMTVLNLLEKISQDSQIIVDVFVNYDCDVDSP 80 (1350)
Q Consensus 1 ~~vf~~s~~If~~l~~~~r~~lK~ei~vf~~~i~l~ile~~~~~~~~qk~~~L~~l~~l~~~p~~~vely~NYDCd~~~~ 80 (1350)
++||+.+++||++|+.+||++||.|+|+||+.|++++++++ ++++.||+++||++.++|++|++++|+|+|||||.+++
T Consensus 87 ~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~-~~~~~~k~~~Le~l~~l~~~p~~l~~lf~NYDCd~~~~ 165 (168)
T PF12783_consen 87 FPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESD-NSSLWQKELALEILRELCKDPQFLVDLFVNYDCDLNSK 165 (168)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHHHHhChhHHHHHHHHcCCCCCCC
Confidence 47999999999999999999999999999999999999987 45788999999999999999999999999999999999
Q ss_pred hHH
Q 000688 81 NIF 83 (1350)
Q Consensus 81 Nif 83 (1350)
|||
T Consensus 166 nif 168 (168)
T PF12783_consen 166 NIF 168 (168)
T ss_pred CCC
Confidence 986
No 15
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=96.03 E-value=2 Score=60.70 Aligned_cols=144 Identities=10% Similarity=0.072 Sum_probs=102.6
Q ss_pred cchhhHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHcCCCCChhhHHHHHH-HHHHHhHhhhhcccCCCCCCCCCCCC
Q 000688 911 DNSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYS-HVIFPIFNGVCDKKDMPDKDEPDSPT 989 (1350)
Q Consensus 911 ~~~~lW~pLL~~L~~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~-~VLfPi~~~l~~~~~~~~~~~~~~~~ 989 (1350)
.|..+|-.+-.-+..+...+..+|+--|+..|=++-..+-. ..+.++.=|. +.|-|+-..+....
T Consensus 1130 ~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle--~eEL~~f~FQkefLkPfe~im~~s~------------ 1195 (1780)
T PLN03076 1130 VWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLE--REELANYNFQNEFMKPFVIVMRKSN------------ 1195 (1780)
T ss_pred ehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcc--hhhhhchhHHHHHHHHHHHHHHhcC------------
Confidence 47788988888888886565688999999987665443322 1122333343 45666665554311
Q ss_pred CCCCCCcccccHHHhHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHhhCCCCC---H
Q 000688 990 SHSPLSEGSTWDSETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGSRLS---Q 1066 (1350)
Q Consensus 990 ~~~~~~~~~~W~~eT~~~al~~l~~lf~~yf~~l~~~l~~~L~lL~~~i~~~~~~la~ig~~~l~~Ll~~~~~~f~---~ 1066 (1350)
- .+.+-+.++.+..+...+.+.+..=|+.++.+|..-...+++.+.+.|-..++.++...-+.++ .
T Consensus 1196 ----------~-~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~ 1264 (1780)
T PLN03076 1196 ----------A-VEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETET 1264 (1780)
T ss_pred ----------c-hHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccch
Confidence 1 1556678888888888888889889999999999999999999999999999988776444343 4
Q ss_pred HHHHHHHHHHHHH
Q 000688 1067 DEWREILLALKET 1079 (1350)
Q Consensus 1067 ~~W~~i~~~~~~l 1079 (1350)
+.-..+++++.+.
T Consensus 1265 ~~F~DlV~cL~~F 1277 (1780)
T PLN03076 1265 TTFTDCVNCLIAF 1277 (1780)
T ss_pred hHHHHHHHHHHHH
Confidence 6677777777653
No 16
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.86 E-value=0.32 Score=65.88 Aligned_cols=150 Identities=16% Similarity=0.208 Sum_probs=80.4
Q ss_pred chhhHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHHHhHhhhhcccCCCCCCCCCCCCC
Q 000688 912 NSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHG-HLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTS 990 (1350)
Q Consensus 912 ~~~lW~pLL~~L~~l~~d~R~eVR~~AlqtLF~iL~~~G-~~f~~~~W~~i~~~VLfPi~~~l~~~~~~~~~~~~~~~~~ 990 (1350)
....|-.++..+.....|....+=..+.++.-.++..|- ..|+.+ - ..|.+.+ +.|...-..... .+
T Consensus 1065 ikSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~-~-~sf~d~v-~cl~~F~~~~~~--~~------- 1132 (1514)
T KOG0929|consen 1065 IKSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQE-M-DSFKDCV-KCLEEFTKNLGF--PD------- 1132 (1514)
T ss_pred hhhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhh-h-HHHHHHH-HHHHHHHHhcCC--Cc-------
Confidence 345899999999999999999999999999888887664 444431 1 2222222 333333221100 00
Q ss_pred CCCCCcccccHHHhHHHHHHHHHHHHHHHHHhHH-----------hhHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHh
Q 000688 991 HSPLSEGSTWDSETAAIGAECLVDIFICFFDVVR-----------SQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGE 1059 (1350)
Q Consensus 991 ~~~~~~~~~W~~eT~~~al~~l~~lf~~yf~~l~-----------~~l~~~L~lL~~~i~~~~~~la~ig~~~l~~Ll~~ 1059 (1350)
++-+.-...| .....+.+- .|++.+. ..|--++.-+...+...-..+..-+...+...+..
T Consensus 1133 ~s~~aI~~lr------~ca~k~~e~--~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF~il~~ 1204 (1514)
T KOG0929|consen 1133 DSLNAIRFLR------LCALKLAEG--VYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLFDILKE 1204 (1514)
T ss_pred cchHHHHHHH------HHHHHhccc--cchhhcccccccccccceeeeehhHhhhhHHhhccHHHHHHHHHHHHHHHHHh
Confidence 0000000001 011111111 1222222 23333444443334434556666677888888999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHh
Q 000688 1060 LGSRLSQDEWREILLALKETTA 1081 (1350)
Q Consensus 1060 ~~~~f~~~~W~~i~~~~~~l~~ 1081 (1350)
.|++|+++-|+.++..+-.+|+
T Consensus 1205 ~g~~F~~~~We~v~~~~fpIF~ 1226 (1514)
T KOG0929|consen 1205 HGDDFSKEFWEDVFRILFPIFD 1226 (1514)
T ss_pred hhhhccHHHHHHHHHheeeccc
Confidence 9999999999988764334443
No 17
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.84 E-value=2.5 Score=52.65 Aligned_cols=314 Identities=19% Similarity=0.257 Sum_probs=167.4
Q ss_pred chhhhHHHHHHHHHHhcCCccHhHHHHHHHHHHHHHHHhcchhhhhhhhhhhhhh-hhHHHH------HhcCCcHHHHHH
Q 000688 704 VWSRMWNVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFL-RPFVII------MQKSGSAEIREL 776 (1350)
Q Consensus 704 ~W~~iW~~l~~~f~~v~~~~n~~v~~~AidsLrqLs~kfLe~eEL~~f~fQ~~fL-~Pf~~i------m~~~~~~eIre~ 776 (1350)
.|+.+-..+ .++--+++...---|++.|.+++ |+-++ .++.+++ +|+..+ +-+++++.||-.
T Consensus 125 ~wpelLp~L----~~~L~s~d~n~~EgA~~AL~KIc------EDsa~-~lds~~~~rpl~~mipkfl~f~~h~spkiRs~ 193 (885)
T KOG2023|consen 125 HWPELLPQL----CELLDSPDYNTCEGAFGALQKIC------EDSAQ-FLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSH 193 (885)
T ss_pred cchhHHHHH----HHHhcCCcccccchhHHHHHHHH------hhhHH-HHhhhcccCchHHhHHHHHHHHhCCChhHHHH
Confidence 455444444 44333444333334555666665 22222 2344333 333322 235679999999
Q ss_pred HHHHHHHHHHhccccccCChHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhhcCCccccccchHHHHHHHHHHHHcCCC
Q 000688 777 IIRCISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRF 856 (1350)
Q Consensus 777 iL~cl~~~l~~~~~~I~SGWk~IF~il~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~~~~ 856 (1350)
.+.||.|+|-.+.+.+--.=..-++.+-+-|.|+++++=+.-...+-.+..-..+.+. ......|+-.. ...|..
T Consensus 194 A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~----phl~~IveyML-~~tqd~ 268 (885)
T KOG2023|consen 194 AVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLV----PHLDNIVEYML-QRTQDV 268 (885)
T ss_pred HHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcc----cchHHHHHHHH-HHccCc
Confidence 9999999998877766656666677777777888887666555555544443333332 12222222222 136778
Q ss_pred CccccHHHHHHHHHHHH-----------------HhhcCCcccccCC-----CCCCCCCCCC----------CCC---C-
Q 000688 857 NSDVCLNAIAFLRFCAV-----------------KLADGGLVCNEKG-----SVDGSSSPPV----------NDN---A- 900 (1350)
Q Consensus 857 d~niSL~Ai~~l~~~~~-----------------~L~~~~~~~~~~~-----~~~~~~~~~~----------~~~---~- 900 (1350)
|.|++++|-++.-..+. .|..|. ...+.+ ..+.+...|- ++. .
T Consensus 269 dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M-~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~ 347 (885)
T KOG2023|consen 269 DENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGM-VYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNG 347 (885)
T ss_pred chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccC-ccccccHHHhcCccccccCCchhhhccchhhhchhccCc
Confidence 88999999876443221 111111 000000 0000000000 000 0
Q ss_pred C---cccCC---CCcccchhhHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhHhhhh
Q 000688 901 P---DLQSF---SDKDDNSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVC 974 (1350)
Q Consensus 901 ~---~~~~~---~~~~~~~~lW~pLL~~L~~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPi~~~l~ 974 (1350)
+ +.... .|+|+...-|= |.+ -.-.||.+|-+++. +.++ .++||++....
T Consensus 348 ~~~~~eDdddDe~DDdD~~~dWN-----LRk--------CSAAaLDVLanvf~-----------~elL-~~l~PlLk~~L 402 (885)
T KOG2023|consen 348 EDADDEDDDDDEDDDDDAFSDWN-----LRK--------CSAAALDVLANVFG-----------DELL-PILLPLLKEHL 402 (885)
T ss_pred ccccccccccccccccccccccc-----Hhh--------ccHHHHHHHHHhhH-----------HHHH-HHHHHHHHHHc
Confidence 0 00000 01111222231 111 12245555544432 2333 37889888765
Q ss_pred cccCCCCCCCCCCCCCCCCCCcccccH-HHhHHHHHHHHHHHHHHHH----Hh--------HH-----------------
Q 000688 975 DKKDMPDKDEPDSPTSHSPLSEGSTWD-SETAAIGAECLVDIFICFF----DV--------VR----------------- 1024 (1350)
Q Consensus 975 ~~~~~~~~~~~~~~~~~~~~~~~~~W~-~eT~~~al~~l~~lf~~yf----~~--------l~----------------- 1024 (1350)
.+ ..|. .|..++|+..+..==-++| .. +.
T Consensus 403 ~~---------------------~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRy 461 (885)
T KOG2023|consen 403 SS---------------------EEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRY 461 (885)
T ss_pred Cc---------------------chhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhh
Confidence 41 2364 6788888887665333322 11 10
Q ss_pred ----------hhHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHh
Q 000688 1025 ----------SQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGSRLSQDEWREILLALKETTA 1081 (1350)
Q Consensus 1025 ----------~~l~~~L~lL~~~i~~~~~~la~ig~~~l~~Ll~~~~~~f~~~~W~~i~~~~~~l~~ 1081 (1350)
..+..+|.=|..++--.|..+-..||++|-.|.+..|+.+ ......|++.+..+|.
T Consensus 462 s~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eL-Vp~l~~IL~~l~~af~ 527 (885)
T KOG2023|consen 462 SKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEEL-VPYLEYILDQLVFAFG 527 (885)
T ss_pred hhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHHHHH
Confidence 2345566666677778999999999999999999999988 4477888877776665
No 18
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.79 E-value=13 Score=49.49 Aligned_cols=136 Identities=18% Similarity=0.256 Sum_probs=99.7
Q ss_pred hHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhHhhhhcccCCCCCCCCCCCCCCCCC
Q 000688 915 FWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPL 994 (1350)
Q Consensus 915 lW~pLL~~L~~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPi~~~l~~~~~~~~~~~~~~~~~~~~~ 994 (1350)
-|=-||.-|-..++++.+..|..|+-+|+.+....|..+.+.. ..+.|+|..-...+
T Consensus 115 ~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~------~~l~~lf~q~~~d~----------------- 171 (1075)
T KOG2171|consen 115 KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL------DDLLRLFSQTMTDP----------------- 171 (1075)
T ss_pred chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH------HHHHHHHHHhccCC-----------------
Confidence 5878999999999999999999999999999999999998722 24557776543311
Q ss_pred CcccccHHHhHHHHHHHHHHHH---HHHHHhHHhhHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHhhCCCCCHHHHHH
Q 000688 995 SEGSTWDSETAAIGAECLVDIF---ICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGSRLSQDEWRE 1071 (1350)
Q Consensus 995 ~~~~~W~~eT~~~al~~l~~lf---~~yf~~l~~~l~~~L~lL~~~i~~~~~~la~ig~~~l~~Ll~~~~~~f~~~~W~~ 1071 (1350)
. .. ..-+.++|+..++..- +.-.+.+..+++.++..+..+++.+++..|.....+|-.|+...++-+ ..+-..
T Consensus 172 -s-~~-vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l-~~~l~~ 247 (1075)
T KOG2171|consen 172 -S-SP-VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLL-RPHLSQ 247 (1075)
T ss_pred -c-ch-HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHH-HHHHHH
Confidence 1 11 3456666666665544 233455677899999999999999999999999999988888765554 445555
Q ss_pred HHHHHH
Q 000688 1072 ILLALK 1077 (1350)
Q Consensus 1072 i~~~~~ 1077 (1350)
|+..--
T Consensus 248 ii~~~l 253 (1075)
T KOG2171|consen 248 IIQFSL 253 (1075)
T ss_pred HHHHHH
Confidence 554433
No 19
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=90.97 E-value=37 Score=42.71 Aligned_cols=293 Identities=16% Similarity=0.209 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHhchhhhcCCCCCCcchHHHHHHHHhhcccccccc--h-hhhHHHHHHHHHHhcCCccHhHHHHHHHHH
Q 000688 659 EAIVAFVKALCKVSISELQSPTDPRVFSLTKLVEIAHYNMNRIRLV--W-SRMWNVLSDFFVSVGLSENLSVAIFVMDSL 735 (1350)
Q Consensus 659 eai~~fv~AL~~vS~eel~~~~~pr~F~L~kLveva~~Nm~Ri~~~--W-~~iW~~l~~~f~~v~~~~n~~v~~~AidsL 735 (1350)
..+..+++.|+++- ..|.-|...+++.+... ..+.... . ..+=+.+.+.+. +.+..|.+.|+..+
T Consensus 188 ~~~~~~~~~L~~~l-------~~~~~~~q~~il~~l~~-~~~~~~~~~~~~~~i~~l~~~l~----s~~~~V~~e~~~~i 255 (526)
T PF01602_consen 188 SLIPKLIRILCQLL-------SDPDPWLQIKILRLLRR-YAPMEPEDADKNRIIEPLLNLLQ----SSSPSVVYEAIRLI 255 (526)
T ss_dssp THHHHHHHHHHHHH-------TCCSHHHHHHHHHHHTT-STSSSHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhhcc-------cccchHHHHHHHHHHHh-cccCChhhhhHHHHHHHHHHHhh----ccccHHHHHHHHHH
Confidence 44666777777653 13444555566655531 1111100 0 122233333332 56677877777665
Q ss_pred HHHHHHhcchhhhhhhhhhhhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCChHHHHHHHHHhhccchHHHH
Q 000688 736 RQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIV 815 (1350)
Q Consensus 736 rqLs~kfLe~eEL~~f~fQ~~fL~Pf~~im~~~~~~eIre~iL~cl~~~l~~~~~~I~SGWk~IF~il~~aa~~~~~~iV 815 (1350)
-.+. ...+ .-..+..|+..++. +.+..+|-.+++++.++...+...+. ....++..+. .+.+..+.
T Consensus 256 ~~l~----~~~~-----~~~~~~~~L~~lL~-s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l~---~~~d~~Ir 321 (526)
T PF01602_consen 256 IKLS----PSPE-----LLQKAINPLIKLLS-SSDPNVRYIALDSLSQLAQSNPPAVF-NQSLILFFLL---YDDDPSIR 321 (526)
T ss_dssp HHHS----SSHH-----HHHHHHHHHHHHHT-SSSHHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHHH---CSSSHHHH
T ss_pred HHhh----cchH-----HHHhhHHHHHHHhh-cccchhehhHHHHHHHhhcccchhhh-hhhhhhheec---CCCChhHH
Confidence 4322 2222 23455677777776 78889999999999999988756666 4444433333 24567888
Q ss_pred HHHHHHHHHHHHhhcCCccccccchHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCC
Q 000688 816 LLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPP 895 (1350)
Q Consensus 816 ~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~~~~d~niSL~Ai~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~ 895 (1350)
..+.+++..++++ .++...++.|.+|+....+.++.-.++..+..++.....
T Consensus 322 ~~~l~lL~~l~~~----------~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~------------------ 373 (526)
T PF01602_consen 322 KKALDLLYKLANE----------SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP------------------ 373 (526)
T ss_dssp HHHHHHHHHH--H----------HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS------------------
T ss_pred HHHHHHHhhcccc----------cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc------------------
Confidence 9999988877754 677889999999985444455666666666555554310
Q ss_pred CCCCCCcccCCCCcccchhhHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhHhhhhc
Q 000688 896 VNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCD 975 (1350)
Q Consensus 896 ~~~~~~~~~~~~~~~~~~~lW~pLL~~L~~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPi~~~l~~ 975 (1350)
..-|+ +..+.++.......|+..++..+.+++..+...- .. ++.-+++.+..
T Consensus 374 -----------------~~~~~--v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~-----~~----~l~~L~~~l~~ 425 (526)
T PF01602_consen 374 -----------------DAEWY--VDTLLKLLEISGDYVSNEIINVIRDLLSNNPELR-----EK----ILKKLIELLED 425 (526)
T ss_dssp -----------------SHHHH--HHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTH-----HH----HHHHHHHHHTS
T ss_pred -----------------hHHHH--HHHHHHhhhhccccccchHHHHHHHHhhcChhhh-----HH----HHHHHHHHHHH
Confidence 01232 2344444444556778888888888887653321 11 23333333322
Q ss_pred ccCCCCCCCCCCCCCCCCCCcccccHHHhHHHHHHHHHHHHHHHHHhHHh--hHHHHHHHHHHhhccCCcchhHHHHHHH
Q 000688 976 KKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGAECLVDIFICFFDVVRS--QLPGVVSILTGFIRSPIQGPASTGVAAL 1053 (1350)
Q Consensus 976 ~~~~~~~~~~~~~~~~~~~~~~~~W~~eT~~~al~~l~~lf~~yf~~l~~--~l~~~L~lL~~~i~~~~~~la~ig~~~l 1053 (1350)
. ...+ ++..++-++..|-+.... ....++..+..-...++..+-.....++
T Consensus 426 -~----------------------~~~~----~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~ 478 (526)
T PF01602_consen 426 -I----------------------SSPE----ALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTAL 478 (526)
T ss_dssp -S----------------------SSHH----HHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred -h----------------------hHHH----HHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 0 0012 345555556666555544 4566666666666666666666666666
Q ss_pred HHHHHhh
Q 000688 1054 LHLAGEL 1060 (1350)
Q Consensus 1054 ~~Ll~~~ 1060 (1350)
-.+....
T Consensus 479 ~Kl~~~~ 485 (526)
T PF01602_consen 479 AKLFKRN 485 (526)
T ss_dssp HHHHHHS
T ss_pred HHHHhhC
Confidence 5555543
No 20
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=90.44 E-value=58 Score=40.98 Aligned_cols=126 Identities=11% Similarity=0.095 Sum_probs=87.4
Q ss_pred CcchHHHHHHHHhhcccccccchhhhHHHHHHHHHHhcCCccHhHHHHHHHHHHHHHHHhcchhhhhhhhhhhhhhhhHH
Q 000688 683 RVFSLTKLVEIAHYNMNRIRLVWSRMWNVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFV 762 (1350)
Q Consensus 683 r~F~L~kLveva~~Nm~Ri~~~W~~iW~~l~~~f~~v~~~~n~~v~~~AidsLrqLs~kfLe~eEL~~f~fQ~~fL~Pf~ 762 (1350)
.-+.+.||+-++...+. -..+...-.+.+.+.+--.|+|..++..|+..|-.++ ..|+. ..++.+..
T Consensus 54 ~~~~~Krl~yl~l~~~~---~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-----~~~~~-----~~l~~~v~ 120 (526)
T PF01602_consen 54 KDLELKRLGYLYLSLYL---HEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-----TPEMA-----EPLIPDVI 120 (526)
T ss_dssp SSHHHHHHHHHHHHHHT---TTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH------SHHHH-----HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh---hcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-----ccchh-----hHHHHHHH
Confidence 45777787777654432 2334455667777777777899888888876666544 22322 23444555
Q ss_pred HHHhcCCcHHHHHHHHHHHHHHHHhccccccCChHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 000688 763 IIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIVLLAFETMEKI 825 (1350)
Q Consensus 763 ~im~~~~~~eIre~iL~cl~~~l~~~~~~I~SGWk~IF~il~~aa~~~~~~iV~~aF~~l~~I 825 (1350)
.++. ++++-||...+-|+.++.....+.+..+| +..+.....|+++.++..|...+..|
T Consensus 121 ~ll~-~~~~~VRk~A~~~l~~i~~~~p~~~~~~~---~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 121 KLLS-DPSPYVRKKAALALLKIYRKDPDLVEDEL---IPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHH-SSSHHHHHHHHHHHHHHHHHCHCCHHGGH---HHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred HHhc-CCchHHHHHHHHHHHHHhccCHHHHHHHH---HHHHhhhccCCcchhHHHHHHHHHHH
Confidence 5544 56779999999999999999888776664 56666666778888888888888877
No 21
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=83.01 E-value=51 Score=37.96 Aligned_cols=155 Identities=15% Similarity=0.249 Sum_probs=96.5
Q ss_pred cHHHHHHHHHHHHHHHHhccccccC-ChHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhhcCCccccccchHHHHHHHH
Q 000688 770 SAEIRELIIRCISQMVLSRVSNVKS-GWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCL 848 (1350)
Q Consensus 770 ~~eIre~iL~cl~~~l~~~~~~I~S-GWk~IF~il~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL 848 (1350)
....|..+.+-+..+++++...+++ |=.-|.+++..+-.+++|.-+..+|+.++.|...|- +. +...++-+++
T Consensus 95 ~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~~----~~~e~lFd~~ 168 (262)
T PF14500_consen 95 PQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--IS----EFAEDLFDVF 168 (262)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--cc----hhHHHHHHHh
Confidence 4567999999999999998877754 667888999999999999999999999998888763 22 3334444444
Q ss_pred HHHH-----cCCCCc-cccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhHHHHH-H
Q 000688 849 LTFT-----NSRFNS-DVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLL-T 921 (1350)
Q Consensus 849 ~~F~-----~~~~d~-niSL~Ai~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL-~ 921 (1350)
..|= -.+.|+ .|+-. ++=..+-.. +...+.+..+=+|+| .
T Consensus 169 ~cYFPI~F~pp~~dp~~IT~e--dLk~~L~~c-------------------------------l~s~~~fa~~~~p~Lle 215 (262)
T PF14500_consen 169 SCYFPITFRPPPNDPYGITRE--DLKRALRNC-------------------------------LSSTPLFAPFAFPLLLE 215 (262)
T ss_pred hheeeeeeeCCCCCCCCCCHH--HHHHHHHHH-------------------------------hcCcHhhHHHHHHHHHH
Confidence 3321 111111 12211 111111111 111122344556644 3
Q ss_pred HHhhhcCCChHHHHHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHH
Q 000688 922 GLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIF 967 (1350)
Q Consensus 922 ~L~~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLf 967 (1350)
.|.. + -+.|+.-+++||-.++..||..==.+.|..+++.+=+
T Consensus 216 KL~s---~-~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 216 KLDS---T-SPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKF 257 (262)
T ss_pred HHcC---C-CcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 4432 2 3459999999999999999965445567776665433
No 22
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.36 E-value=71 Score=41.22 Aligned_cols=257 Identities=14% Similarity=0.217 Sum_probs=146.8
Q ss_pred cCCccHhHHHHHHHHHHHHHHHhcchhhhhhhhhhhhhhhhHHHHHhcC-CcHHHHHHHHHHHHHHHHhccccccC----
Q 000688 720 GLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKS-GSAEIRELIIRCISQMVLSRVSNVKS---- 794 (1350)
Q Consensus 720 ~~~~n~~v~~~AidsLrqLs~kfLe~eEL~~f~fQ~~fL~Pf~~im~~~-~~~eIre~iL~cl~~~l~~~~~~I~S---- 794 (1350)
.-+++..++..|-+.|.+++. +.++ .|+.-+..++.+. +..++|-..==.|++-+.++....+.
T Consensus 10 tlSpD~n~~~~Ae~~l~~~~~-----~nf~------~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~q 78 (859)
T KOG1241|consen 10 TLSPDQNVRKRAEKQLEQAQS-----QNFP------QFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQ 78 (859)
T ss_pred HcCCCcchHHHHHHHHHHHHh-----ccHH------HHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHH
Confidence 446777788777777777652 1111 3445555444433 34444433333444444444443322
Q ss_pred ChHHH--------HHHHHHhhccchHHHHHHHHHHHHHHHHhhcCCccccccchHHHHHHHHHHHHcCCCCc---cccHH
Q 000688 795 GWKSV--------FSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNS---DVCLN 863 (1350)
Q Consensus 795 GWk~I--------F~il~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~~~~d~---niSL~ 863 (1350)
-|-.+ =+.+..+-....+..-..|=+++-.|..=- || .+..+++|..|..=+.+.... .-++.
T Consensus 79 RWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~E---lP---~n~wp~li~~lv~nv~~~~~~~~k~~sle 152 (859)
T KOG1241|consen 79 RWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIE---LP---QNQWPELIVTLVSNVGEEQASMVKESSLE 152 (859)
T ss_pred HHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhh---Cc---hhhCHHHHHHHHHhcccccchHHHHHHHH
Confidence 23210 011111111223344456667777776543 55 688999999998877654333 34677
Q ss_pred HHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 000688 864 AIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLF 943 (1350)
Q Consensus 864 Ai~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~L~~l~~d~R~eVR~~AlqtLF 943 (1350)
||+++ |-+ +... . -.+.....-+-+..|..+ ..+...||-.|+..|.
T Consensus 153 alGyi--ce~-i~pe---------------v-------------l~~~sN~iLtaIv~gmrk--~e~s~~vRLaa~~aL~ 199 (859)
T KOG1241|consen 153 ALGYI--CED-IDPE---------------V-------------LEQQSNDILTAIVQGMRK--EETSAAVRLAALNALY 199 (859)
T ss_pred HHHHH--Hcc-CCHH---------------H-------------HHHHHhHHHHHHHhhccc--cCCchhHHHHHHHHHH
Confidence 77765 211 1000 0 000011222222222222 3566789999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHHHhHhhhhcccCCCCCCCCCCCCCCCCCCcccccHHHhHHHHHHHHHHHHHHHHHhH
Q 000688 944 NILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGAECLVDIFICFFDVV 1023 (1350)
Q Consensus 944 ~iL~~~G~~f~~~~W~~i~~~VLfPi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~eT~~~al~~l~~lf~~yf~~l 1023 (1350)
+.|.--+..|..+.=..++- ..+...++. + +.+-++-|++.++++..-||+.+
T Consensus 200 nsLef~~~nF~~E~ern~iM-------qvvcEatq~--------------~------d~~i~~aa~~ClvkIm~LyY~~m 252 (859)
T KOG1241|consen 200 NSLEFTKANFNNEMERNYIM-------QVVCEATQS--------------P------DEEIQVAAFQCLVKIMSLYYEFM 252 (859)
T ss_pred HHHHHHHHhhccHhhhceee-------eeeeecccC--------------C------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997777776654333222 222222211 0 13667889999999999999998
Q ss_pred Hh-hHHHHHHHHHHhhccCCcchhHHHHHHH
Q 000688 1024 RS-QLPGVVSILTGFIRSPIQGPASTGVAAL 1053 (1350)
Q Consensus 1024 ~~-~l~~~L~lL~~~i~~~~~~la~ig~~~l 1053 (1350)
.+ |.+.++.+-..-|+++++++|--|++--
T Consensus 253 ~~yM~~alfaitl~amks~~deValQaiEFW 283 (859)
T KOG1241|consen 253 EPYMEQALFAITLAAMKSDNDEVALQAIEFW 283 (859)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 86 4566899988999999999999887643
No 23
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=78.01 E-value=29 Score=43.34 Aligned_cols=142 Identities=16% Similarity=0.183 Sum_probs=73.7
Q ss_pred cccCChHHHHHHHHHHHHhchhhhcCCCCCCcchHHHHHHHHhhcccccccchhhhHHHHHHHH--HHhcCCccHhHHHH
Q 000688 653 SQRLNSEAIVAFVKALCKVSISELQSPTDPRVFSLTKLVEIAHYNMNRIRLVWSRMWNVLSDFF--VSVGLSENLSVAIF 730 (1350)
Q Consensus 653 S~~L~~eai~~fv~AL~~vS~eel~~~~~pr~F~L~kLveva~~Nm~Ri~~~W~~iW~~l~~~f--~~v~~~~n~~v~~~ 730 (1350)
-..++.+++..+|..||..-.-. .+.+-.==+..|+=|-... ...=..|.+.+ ..-.-.++..+-.=
T Consensus 207 y~~iP~~sl~~~i~vLCsi~~~~----------~l~~~~w~~m~nL~~S~~g-~~~i~~L~~iL~~~~~~~~~~~~~lRG 275 (464)
T PF11864_consen 207 YGDIPSESLSPCIEVLCSIVNSV----------SLCKPSWRTMRNLLKSHLG-HSAIRTLCDILRSPDPQNKRDINVLRG 275 (464)
T ss_pred cCcCChHHHHHHHHHHhhHhccc----------ccchhHHHHHHHHHcCccH-HHHHHHHHHHHcccCccccccHHHHhh
Confidence 47889999999999999872111 1111111122222221111 11112222222 11112234555567
Q ss_pred HHHHHHHHHHHhcchhhhhhhhhh-hhhhhhHHHHHhcCCcHHHHHHHHHHHHHHH-Hhccccc-cCChHHHHHHHHHhh
Q 000688 731 VMDSLRQLAMKFLEREELANYNFQ-NEFLRPFVIIMQKSGSAEIRELIIRCISQMV-LSRVSNV-KSGWKSVFSIFTAAA 807 (1350)
Q Consensus 731 AidsLrqLs~kfLe~eEL~~f~fQ-~~fL~Pf~~im~~~~~~eIre~iL~cl~~~l-~~~~~~I-~SGWk~IF~il~~aa 807 (1350)
||..|+.+..+.-+ +..+.-.|- .-+|..|...+..... -|---|+.++..++ ...+..+ ...|..+++++..+.
T Consensus 276 Av~~l~~ll~~~~~-~~~~~l~~~~~~vl~sl~~al~~~~~-~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~~~~ 353 (464)
T PF11864_consen 276 AVFFLRMLLWGSGE-QGYPSLPFSPSSVLPSLLNALKSNSP-RVDYEILLLINRLLDGKYGRELSEEDWDIILDIIEEIF 353 (464)
T ss_pred HHHHHHHHHhcccc-CCcceecccHHHHHHHHHHHHhCCCC-eehHHHHHHHHHHHhHhhhhhhcccCchHHHHHHHHHH
Confidence 77778776644421 222222222 1356667777764332 23334677778888 6666664 559999999998753
No 24
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=77.35 E-value=1.2e+02 Score=33.68 Aligned_cols=155 Identities=15% Similarity=0.080 Sum_probs=83.1
Q ss_pred hhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCChHHHHHHHH-------HhhccchHHHHHHHHHHHHHHHHh
Q 000688 756 EFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIFT-------AAAADERKNIVLLAFETMEKIVRE 828 (1350)
Q Consensus 756 ~fL~Pf~~im~~~~~~eIre~iL~cl~~~l~~~~~~I~SGWk~IF~il~-------~aa~~~~~~iV~~aF~~l~~I~~d 828 (1350)
.++..|+. -..+.+-+.|...|..|..++..+. -....+.++..+. ....+.+..+++.|..+++.++..
T Consensus 7 ~~~~~l~~-~~~~~~W~~r~~al~~L~~l~~~~~--~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~ 83 (228)
T PF12348_consen 7 EILAALEK-KESESDWEERVEALQKLRSLIKGNA--PEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQ 83 (228)
T ss_dssp GS-TTHHH-HHT-SSHHHHHHHHHHHHHHHHH-B-------HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHhc-cCCccCHHHHHHHHHHHHHHHHcCC--ccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 34455554 3345678888889999999998761 2334555555555 334456677999999999988765
Q ss_pred hcCCccccccchHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCC
Q 000688 829 YFPHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSD 908 (1350)
Q Consensus 829 ~l~~l~~~~~~~f~d~I~cL~~F~~~~~d~niSL~Ai~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 908 (1350)
.=..+ ...+..++.+|.+=+.... .-|+-.|...|..+..+..
T Consensus 84 l~~~~----~~~~~~~l~~Ll~~~~~~~-~~i~~~a~~~L~~i~~~~~-------------------------------- 126 (228)
T PF12348_consen 84 LGSHF----EPYADILLPPLLKKLGDSK-KFIREAANNALDAIIESCS-------------------------------- 126 (228)
T ss_dssp HGGGG----HHHHHHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS---------------------------------
T ss_pred HhHhH----HHHHHHHHHHHHHHHcccc-HHHHHHHHHHHHHHHHHCC--------------------------------
Confidence 43332 2345566666666553321 2244444443332222100
Q ss_pred cccchhhHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHcC---CCCCh
Q 000688 909 KDDNSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHG---HLFPR 955 (1350)
Q Consensus 909 ~~~~~~lW~pLL~~L~~l~~d~R~eVR~~AlqtLF~iL~~~G---~~f~~ 955 (1350)
.... .++..+...+.+..+.||..+++.+-.++..+| ..+..
T Consensus 127 --~~~~---~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 127 --YSPK---ILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp --H--H---HHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred --cHHH---HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 0001 235556667789999999999999999999998 44444
No 25
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=77.08 E-value=2.7e+02 Score=37.26 Aligned_cols=270 Identities=14% Similarity=0.131 Sum_probs=143.3
Q ss_pred CCcHHHHHHHHHHHHHHHHhccccccC-ChHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhhcCCccccccchHHHHHH
Q 000688 768 SGSAEIRELIIRCISQMVLSRVSNVKS-GWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVK 846 (1350)
Q Consensus 768 ~~~~eIre~iL~cl~~~l~~~~~~I~S-GWk~IF~il~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~ 846 (1350)
+++.|+|-|...-+..=++.-.-++.- +-+-+..++-..-.|.++++-..|..|+--+++. ++ .+.....|+
T Consensus 16 ssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsK----vk---e~~le~~ve 88 (1233)
T KOG1824|consen 16 SSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSK----VK---EDQLETIVE 88 (1233)
T ss_pred CCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhh----ch---HHHHHHHHH
Confidence 556778888877777777665445543 5555566666666678888999999999988744 45 466777777
Q ss_pred HHHHHHcCCCCccccHHHHHHHHHHHHHhhc--CCcc----cccC---CCCCCCCCCCCCCC-CCcccC---CCC--ccc
Q 000688 847 CLLTFTNSRFNSDVCLNAIAFLRFCAVKLAD--GGLV----CNEK---GSVDGSSSPPVNDN-APDLQS---FSD--KDD 911 (1350)
Q Consensus 847 cL~~F~~~~~d~niSL~Ai~~l~~~~~~L~~--~~~~----~~~~---~~~~~~~~~~~~~~-~~~~~~---~~~--~~~ 911 (1350)
.|..-.-...++.--++||++.-.++. ++- +.+. +... -......+.++..- .+-... ... .+-
T Consensus 89 ~L~~~~~s~keq~rdissi~Lktvi~n-l~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~l 167 (1233)
T KOG1824|consen 89 NLCSNMLSGKEQLRDISSIGLKTVIAN-LPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTL 167 (1233)
T ss_pred HHhhhhccchhhhccHHHHHHHHHHhc-CCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhccc
Confidence 776543222223333456655432222 210 0000 0000 00000000000000 000000 000 000
Q ss_pred chhhHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhHhhhhcccCCCCCCCCCCCCCC
Q 000688 912 NSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSH 991 (1350)
Q Consensus 912 ~~~lW~pLL~~L~~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPi~~~l~~~~~~~~~~~~~~~~~~ 991 (1350)
...+-..+|..+-....-+|..||++|+..+=.... +|. .. .+..++--+++.+....
T Consensus 168 l~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~-~~~---~~----ly~~li~~Ll~~L~~~~-------------- 225 (1233)
T KOG1824|consen 168 LPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLAS-SCN---RD----LYVELIEHLLKGLSNRT-------------- 225 (1233)
T ss_pred CcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHH-hcC---HH----HHHHHHHHHHhccCCCC--------------
Confidence 112445677778777888999999999988766554 332 22 33333333334443311
Q ss_pred CCCCcccccHHHhHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHh---hccCCcchhHHHHHHHHHHHHhhCCCCCHHH
Q 000688 992 SPLSEGSTWDSETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGF---IRSPIQGPASTGVAALLHLAGELGSRLSQDE 1068 (1350)
Q Consensus 992 ~~~~~~~~W~~eT~~~al~~l~~lf~~yf~~l~~~l~~~L~lL~~~---i~~~~~~la~ig~~~l~~Ll~~~~~~f~~~~ 1068 (1350)
+..- .-|.++++..+++--.+-|.. .++.+.-++..+ +..+.+++..-....|.-++.-+-... -.+
T Consensus 226 -----q~~~-~rt~Iq~l~~i~r~ag~r~~~---h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei-~p~ 295 (1233)
T KOG1824|consen 226 -----QMSA-TRTYIQCLAAICRQAGHRFGS---HLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEI-LPH 295 (1233)
T ss_pred -----chHH-HHHHHHHHHHHHHHhcchhhc---ccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhh-ccc
Confidence 1111 267888888887765554432 223333333333 377889999999999999988765444 346
Q ss_pred HHHHHHHHH
Q 000688 1069 WREILLALK 1077 (1350)
Q Consensus 1069 W~~i~~~~~ 1077 (1350)
|.+++...-
T Consensus 296 ~pei~~l~l 304 (1233)
T KOG1824|consen 296 VPEIINLCL 304 (1233)
T ss_pred chHHHHHHH
Confidence 666665433
No 26
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=75.18 E-value=1.3e+02 Score=33.27 Aligned_cols=178 Identities=17% Similarity=0.131 Sum_probs=99.1
Q ss_pred CcchHHHHHHHHhhcccccccchhhhHHHHH---HHHHHhcCCccHhHHHHHHHHHHHHHHHhcchhhhhhhhhhhhhhh
Q 000688 683 RVFSLTKLVEIAHYNMNRIRLVWSRMWNVLS---DFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLR 759 (1350)
Q Consensus 683 r~F~L~kLveva~~Nm~Ri~~~W~~iW~~l~---~~f~~v~~~~n~~v~~~AidsLrqLs~kfLe~eEL~~f~fQ~~fL~ 759 (1350)
|.=.|++|-.++..| ........+++.+. .-+.......+..|+..|+..+..++...-.. +..+ -..++.
T Consensus 24 r~~al~~L~~l~~~~--~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~--~~~~--~~~~l~ 97 (228)
T PF12348_consen 24 RVEALQKLRSLIKGN--APEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH--FEPY--ADILLP 97 (228)
T ss_dssp HHHHHHHHHHHHHH---B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG--GHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHcC--CccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh--HHHH--HHHHHH
Confidence 344566777777666 11222344555555 34444444445668889988888888543321 2111 133444
Q ss_pred hHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCChHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhhc---CCcccc
Q 000688 760 PFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYF---PHITET 836 (1350)
Q Consensus 760 Pf~~im~~~~~~eIre~iL~cl~~~l~~~~~~I~SGWk~IF~il~~aa~~~~~~iV~~aF~~l~~I~~d~l---~~l~~~ 836 (1350)
++.... .....-|++...+|+..|++..+ .+=+.++.++..+..++++.+-..+.+.+..++..+- ..+..
T Consensus 98 ~Ll~~~-~~~~~~i~~~a~~~L~~i~~~~~----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~- 171 (228)
T PF12348_consen 98 PLLKKL-GDSKKFIREAANNALDAIIESCS----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK- 171 (228)
T ss_dssp HHHHGG-G---HHHHHHHHHHHHHHHTTS-----H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG---
T ss_pred HHHHHH-ccccHHHHHHHHHHHHHHHHHCC----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc-
Confidence 443322 23456799999999999998654 1226669999999999998888888888888877765 22220
Q ss_pred ccchHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHH
Q 000688 837 ESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVK 874 (1350)
Q Consensus 837 ~~~~f~d~I~cL~~F~~~~~d~niSL~Ai~~l~~~~~~ 874 (1350)
...+..++.++..+.... +.++=-.|-..||.....
T Consensus 172 -~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 172 -SAFLKQLVKALVKLLSDA-DPEVREAARECLWALYSH 207 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHH
T ss_pred -cchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHH
Confidence 223578888888887543 345555565666655443
No 27
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=73.40 E-value=27 Score=36.69 Aligned_cols=137 Identities=14% Similarity=0.159 Sum_probs=83.0
Q ss_pred hhhcCCChHHHHHHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHHHhHhhhhcccCCCCCCCCCCCCCCCCCCcccccH
Q 000688 924 SKLTSDSRSTIRKSSLEVLFNILKDHG--HLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWD 1001 (1350)
Q Consensus 924 ~~l~~d~R~eVR~~AlqtLF~iL~~~G--~~f~~~~W~~i~~~VLfPi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 1001 (1350)
.......+.-=|+.|++-|-+++.... ..++...|..+|. .||-.+..-+.......... .+..+-...-+
T Consensus 10 ~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ife-aL~~~i~~Ek~~y~~~~~~~------~s~~~~~~~RL 82 (155)
T PF11640_consen 10 LRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFE-ALFRCIEKEKEAYSRKKSSS------ASTATTAESRL 82 (155)
T ss_pred HHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHH-HHHHHHHHHHHHHhcCCCcc------cchHHHHHHHH
Confidence 333445677889999999999998665 8899999999998 56666665543221100000 00000011234
Q ss_pred HHhHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHhhccCC-cchhHHHHHHHHHH---HHh--hCCCCCHHHHH
Q 000688 1002 SETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGFIRSPI-QGPASTGVAALLHL---AGE--LGSRLSQDEWR 1070 (1350)
Q Consensus 1002 ~eT~~~al~~l~~lf~~yf~~l~~~l~~~L~lL~~~i~~~~-~~la~ig~~~l~~L---l~~--~~~~f~~~~W~ 1070 (1350)
+.+.-+++.++......+.... ...+++.+..++..++ +-+.-+|..+.+-| +.. ....++...|.
T Consensus 83 -~~~a~~lR~~ve~~~~~~k~kt--~~~Ll~hI~~~l~~~~~~~~~p~~~Dy~k~L~~iL~~~~~~ehL~~~~W~ 154 (155)
T PF11640_consen 83 -SSCASALRLFVEKSNSRLKRKT--VKALLDHITDLLPDPDDSLLEPLSLDYSKILKAILSYPPHVEHLSPKQWE 154 (155)
T ss_pred -HHHHHHHHHHHHHHHhhcccch--HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHCCChHHHHCcHhhcC
Confidence 6677777777777666554433 4567777777777777 55566666655544 222 44456666663
No 28
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=72.56 E-value=1.4e+02 Score=35.39 Aligned_cols=111 Identities=15% Similarity=0.097 Sum_probs=76.5
Q ss_pred ChHHHHHHHHHHHHHH-HHHcCCCCChhhHHHHHHHHHHHhHhhhhcccCCCCCCCCCCCCCCCCCCcccccHHHhHHHH
Q 000688 930 SRSTIRKSSLEVLFNI-LKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIG 1008 (1350)
Q Consensus 930 ~R~eVR~~AlqtLF~i-L~~~G~~f~~~~W~~i~~~VLfPi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~eT~~~a 1008 (1350)
.-|+.|..-+=.++.+ +...|..+.+ .-..|++.|+-|.++-+... .... .+-+..=
T Consensus 83 ~~p~~r~~evL~l~~~ii~kl~~~~~~-~v~~I~~~vf~~Tl~MI~~d--------------------~~~y-Pe~r~~f 140 (319)
T PF08767_consen 83 SVPDAREPEVLSLMATIINKLGELIQP-QVPQILEAVFECTLPMINKD--------------------FEEY-PEHRVNF 140 (319)
T ss_dssp S-GGGS-HHHHHHHHHHHHHHGGGCCC-CHHHHHHHHHHHHHHHHSST--------------------SSSS-HHHHHHH
T ss_pred CCccccChhHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHhh--------------------hhhC-hHHHHHH
Confidence 4566666655445444 4466666653 45777888888888777431 1112 3666666
Q ss_pred HHHHHHHHHHHHHhHH----hhHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHhhCC
Q 000688 1009 AECLVDIFICFFDVVR----SQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGS 1062 (1350)
Q Consensus 1009 l~~l~~lf~~yf~~l~----~~l~~~L~lL~~~i~~~~~~la~ig~~~l~~Ll~~~~~ 1062 (1350)
.+.+-.+-.++|+.+. ..+..+++-+.|.++.++.+++..|...+..++.....
T Consensus 141 f~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 141 FKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666777665 35789999999999999999999999999999987443
No 29
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.55 E-value=4e+02 Score=37.19 Aligned_cols=252 Identities=15% Similarity=0.207 Sum_probs=136.5
Q ss_pred CCCcchHHHHHHHHhhcccccccchhhhHHHHHHHHHHhcCCccHhHHHHHHHHHHHHHHHhcc----------hhhhhh
Q 000688 681 DPRVFSLTKLVEIAHYNMNRIRLVWSRMWNVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLE----------REELAN 750 (1350)
Q Consensus 681 ~pr~F~L~kLveva~~Nm~Ri~~~W~~iW~~l~~~f~~v~~~~n~~v~~~AidsLrqLs~kfLe----------~eEL~~ 750 (1350)
+-|+=+++-++.|...--.-....|..+.+.|... ...+......++..+-++||-++.-||. .+-+..
T Consensus 857 evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~-~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~~ 935 (1610)
T KOG1848|consen 857 EVRISSLEALVSILETVGEHLLHGWQSVFEMLRSA-TDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLLV 935 (1610)
T ss_pred eeeHHHHHHHHHHHhccchhhccccHHHHHHHHHH-hhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHHH
Confidence 34777888888887666655666688888887732 2333333456788888999988888885 233444
Q ss_pred hhhhhhhh----hh---------HHHH-HhcCCcHHHHHHHHHHHHHHHHhccccc--cCChHHHHHHHHHhhccchHHH
Q 000688 751 YNFQNEFL----RP---------FVII-MQKSGSAEIRELIIRCISQMVLSRVSNV--KSGWKSVFSIFTAAAADERKNI 814 (1350)
Q Consensus 751 f~fQ~~fL----~P---------f~~i-m~~~~~~eIre~iL~cl~~~l~~~~~~I--~SGWk~IF~il~~aa~~~~~~i 814 (1350)
|.=|+.=+ .. |..- |..+.+..-..+.++-+.. .+..+-+ .-=|-.+|.-|.-.+.|..+++
T Consensus 936 fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~s--s~~~~~~l~e~lwi~ll~~L~~~~~dsr~eV 1013 (1610)
T KOG1848|consen 936 FSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYS--SMKSKEILPEVLWIMLLVHLADLCEDSRAEV 1013 (1610)
T ss_pred HHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcc--cccchhhhhhHHHHHHHHHHHHHhccchHHH
Confidence 54453211 00 0000 1111111111111111111 0000001 1147888888888888888887
Q ss_pred HHHHHHHHHHHHHhhcCCccccccchHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHhhcCCcccccCCCCC---CC
Q 000688 815 VLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVD---GS 891 (1350)
Q Consensus 815 V~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~~~~d~niSL~Ai~~l~~~~~~L~~~~~~~~~~~~~~---~~ 891 (1350)
=+-|-+++=.|++-|-..++ .++..+|+ |.+...|.++.-. +..+.-+ .+
T Consensus 1014 RngAvqtlfri~~Shg~~l~---~~aW~s~~-----------------------w~vi~pLLd~~~~-q~~~ewngkeiq 1066 (1610)
T KOG1848|consen 1014 RNGAVQTLFRIFNSHGSKLG---TNAWASCC-----------------------WLVIMPLLDSQPI-QNVSEWNGKEIQ 1066 (1610)
T ss_pred hhhHHHHHHHHHhhhcccCC---hhHHHHHH-----------------------HHHHHHHhccccc-cchhhhcchhHh
Confidence 78889999899998887777 45555543 2222222221000 0000000 00
Q ss_pred CCCC-----CCCCCC-----cccCCCCcccchhhHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHcC--CCCChhhHH
Q 000688 892 SSPP-----VNDNAP-----DLQSFSDKDDNSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHG--HLFPRQFWM 959 (1350)
Q Consensus 892 ~~~~-----~~~~~~-----~~~~~~~~~~~~~lW~pLL~~L~~l~~d~R~eVR~~AlqtLF~iL~~~G--~~f~~~~W~ 959 (1350)
.+-. .-.+.. .-..+....+..+.|--+|.=+-++..|.-+|+..+||..++..+.++. +.++..+-.
T Consensus 1067 kqwtet~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~sii~~~~ln~~~~~ 1146 (1610)
T KOG1848|consen 1067 KQWTETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFSIIEFGKLNATFTL 1146 (1610)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHHhhhccccchHHH
Confidence 0000 000000 0000112234677899999999999999999999999999999999774 555555444
Q ss_pred HHH
Q 000688 960 GVY 962 (1350)
Q Consensus 960 ~i~ 962 (1350)
.|.
T Consensus 1147 k~n 1149 (1610)
T KOG1848|consen 1147 KIN 1149 (1610)
T ss_pred Hhh
Confidence 433
No 30
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=71.23 E-value=45 Score=35.42 Aligned_cols=121 Identities=15% Similarity=0.206 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhchhhhcCC---------CCCCcchHHHHHHHHhhcccccc------cchhhhHHHHHHHHHHhcCCccH
Q 000688 661 IVAFVKALCKVSISELQSP---------TDPRVFSLTKLVEIAHYNMNRIR------LVWSRMWNVLSDFFVSVGLSENL 725 (1350)
Q Consensus 661 i~~fv~AL~~vS~eel~~~---------~~pr~F~L~kLveva~~Nm~Ri~------~~W~~iW~~l~~~f~~v~~~~n~ 725 (1350)
.....+.||.++..+.... ..+|.|+|+-|-.+-..+...+. ..-.-+++.+..++.+.+.+++.
T Consensus 8 a~~vf~~Lc~L~~~~~~~~~~~~~~~~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~ 87 (168)
T PF12783_consen 8 AFLVFRDLCSLSSKPSDPGNSPDFLSHDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDF 87 (168)
T ss_pred HHHHHHHHHHHhCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3456788999984433322 23578999988888777776665 22355677888888888888776
Q ss_pred hHHHHHHHHHHHHHHHhcchhhhhhhhhhh-hhhhhHHH-HHhc-CCcHHHHHHHHHHHHHHHH
Q 000688 726 SVAIFVMDSLRQLAMKFLEREELANYNFQN-EFLRPFVI-IMQK-SGSAEIRELIIRCISQMVL 786 (1350)
Q Consensus 726 ~v~~~AidsLrqLs~kfLe~eEL~~f~fQ~-~fL~Pf~~-im~~-~~~~eIre~iL~cl~~~l~ 786 (1350)
.+-..++..+..+..+|-. +.+.|- .|+.-... ++.. ++...-|+.+|+++..+..
T Consensus 88 ~i~~~slri~~~l~~~~~~-----~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 88 PIFSRSLRIFLTLLSRFRS-----HLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 6666666666666655532 122332 23322222 3332 2356788999999888763
No 31
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=69.87 E-value=37 Score=39.75 Aligned_cols=65 Identities=25% Similarity=0.434 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHHHHHcC-CCCChhhH--HHHHHHHHHHhHhhhhcccCCCCCCCCCCCCCCCCCCcccccHHHhHHH
Q 000688 931 RSTIRKSSLEVLFNILKDHG-HLFPRQFW--MGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAI 1007 (1350)
Q Consensus 931 R~eVR~~AlqtLF~iL~~~G-~~f~~~~W--~~i~~~VLfPi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~eT~~~ 1007 (1350)
..+||..|++.+|+++..|| ..|+...+ ......-+..+|-..... . ..+....
T Consensus 77 ~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~------------------~-----~~~~~~~ 133 (298)
T PF12719_consen 77 DEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDS------------------E-----NPELQAI 133 (298)
T ss_pred CHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhc------------------C-----CHHHHHH
Confidence 89999999999999999999 44455444 112222233344433321 0 1367888
Q ss_pred HHHHHHHHHHH
Q 000688 1008 GAECLVDIFIC 1018 (1350)
Q Consensus 1008 al~~l~~lf~~ 1018 (1350)
|.+|+++|+..
T Consensus 134 a~EGl~KLlL~ 144 (298)
T PF12719_consen 134 AVEGLCKLLLS 144 (298)
T ss_pred HHHHHHHHHhc
Confidence 99999998765
No 32
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=69.38 E-value=46 Score=35.77 Aligned_cols=112 Identities=19% Similarity=0.275 Sum_probs=70.2
Q ss_pred cHhHHHHHHHHHHHHHHHhcchhhhhhhhhhhhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCChHHHHHHH
Q 000688 724 NLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIF 803 (1350)
Q Consensus 724 n~~v~~~AidsLrqLs~kfLe~eEL~~f~fQ~~fL~Pf~~im~~~~~~eIre~iL~cl~~~l~~~~~~I~SGWk~IF~il 803 (1350)
|+.||.-|+-++.+|+.+|-.--| .+ -|...-.-+..++.||...+.|+.+++.+..-.++. ..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve--------~~-~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~--~l~~~~l 69 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE--------PY-LPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKG--QLFSRIL 69 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH--------hH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehh--hhhHHHH
Confidence 356788888889999987654222 01 122222335678999999999999999864333332 1123455
Q ss_pred HHhhccchHHHHHHHHHHHHHHHHhhcCCccccccchHHHHHHHHHH
Q 000688 804 TAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLT 850 (1350)
Q Consensus 804 ~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~ 850 (1350)
. +-.|+++.+...|=..+..+....-+... ...|.+||..|..
T Consensus 70 ~-~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i---~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 70 K-LLVDENPEIRSLARSFFSELLKKRNPNII---YNNFPELISSLNN 112 (178)
T ss_pred H-HHcCCCHHHHHHHHHHHHHHHHhccchHH---HHHHHHHHHHHhC
Confidence 4 44788999999998888877776433332 3555555544433
No 33
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=66.15 E-value=3.2e+02 Score=34.57 Aligned_cols=69 Identities=19% Similarity=0.238 Sum_probs=44.8
Q ss_pred HHHHHhcCCccHhHHHHHHHHHHHHHHHhcchhhhhhhhhhhhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHh
Q 000688 714 DFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLS 787 (1350)
Q Consensus 714 ~~f~~v~~~~n~~v~~~AidsLrqLs~kfLe~eEL~~f~fQ~~fL~Pf~~im~~~~~~eIre~iL~cl~~~l~~ 787 (1350)
.++..+-.+++..|+..|+..|+.++..-...+. -|....+.-+..+|.+ ++..+|-.+++++.++-..
T Consensus 122 ~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~----l~~~~~~~~L~~l~~~-~~~~vR~Rv~el~v~i~~~ 190 (503)
T PF10508_consen 122 PLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQ----LFDSNLLSKLKSLMSQ-SSDIVRCRVYELLVEIASH 190 (503)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHH----HhCcchHHHHHHHHhc-cCHHHHHHHHHHHHHHHhc
Confidence 3455566788999999999999998743221222 2333445556666644 3557888898888777543
No 34
>PTZ00429 beta-adaptin; Provisional
Probab=64.16 E-value=3.4e+02 Score=36.11 Aligned_cols=49 Identities=20% Similarity=0.171 Sum_probs=32.7
Q ss_pred hHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 000688 915 FWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYS 963 (1350)
Q Consensus 915 lW~pLL~~L~~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~ 963 (1350)
+.=++...+.+++.|+.+-||+.|+-.+.++...+.......-|...+.
T Consensus 137 i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~ 185 (746)
T PTZ00429 137 VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLV 185 (746)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHH
Confidence 3346666677777788888888888888887776665555444554443
No 35
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=61.68 E-value=30 Score=33.41 Aligned_cols=107 Identities=11% Similarity=0.044 Sum_probs=61.7
Q ss_pred HHHHhcCCccHhHHHHHHHHHHHHHHHhcchhhhhhhhhhhhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccC
Q 000688 715 FFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKS 794 (1350)
Q Consensus 715 ~f~~v~~~~n~~v~~~AidsLrqLs~kfLe~eEL~~f~fQ~~fL~Pf~~im~~~~~~eIre~iL~cl~~~l~~~~~~I~S 794 (1350)
++.+.-.+.+..++..|+..|..++... ++....-.+..++.++..++.. .+..++...+.++.++..........
T Consensus 11 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~---~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 11 ALVSLLSSSDENVQREAAWALSNLSAGN---NDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhcCC---HHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 3444445666778888888887766321 3333333455788888887765 57899999999999997654322111
Q ss_pred ChHH-HHHHHHHhhccchHHHHHHHHHHHHHH
Q 000688 795 GWKS-VFSIFTAAAADERKNIVLLAFETMEKI 825 (1350)
Q Consensus 795 GWk~-IF~il~~aa~~~~~~iV~~aF~~l~~I 825 (1350)
=++. +...+-....+.+..+.+.+..++..+
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 1111 233333333333455555555555443
No 36
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=61.68 E-value=13 Score=27.71 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=21.3
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHHHH
Q 000688 920 LTGLSKLTSDSRSTIRKSSLEVLFNILK 947 (1350)
Q Consensus 920 L~~L~~l~~d~R~eVR~~AlqtLF~iL~ 947 (1350)
+-.+.++..|+.++||..|+..|-++.+
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 3345566779999999999999987764
No 37
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=60.81 E-value=4.1e+02 Score=32.95 Aligned_cols=160 Identities=15% Similarity=0.202 Sum_probs=101.6
Q ss_pred hhhhhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCChHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhhcC
Q 000688 752 NFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYFP 831 (1350)
Q Consensus 752 ~fQ~~fL~Pf~~im~~~~~~eIre~iL~cl~~~l~~~~~~I~SGWk~IF~il~~aa~~~~~~iV~~aF~~l~~I~~d~l~ 831 (1350)
+|-+-++.-| .++..+.+.-+|.+.|+.|.+|+.+....+...=.....-+--++.+.++++++.|=+..-.+...|++
T Consensus 326 ~f~~iL~~l~-EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P 404 (516)
T KOG2956|consen 326 HFAEILLLLL-EVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLP 404 (516)
T ss_pred HHHHHHHHHH-HHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCc
Confidence 3544444434 456777788899999999999999999988776555555555566778888999999888777777654
Q ss_pred CccccccchHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCccc
Q 000688 832 HITETESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDD 911 (1350)
Q Consensus 832 ~l~~~~~~~f~d~I~cL~~F~~~~~d~niSL~Ai~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 911 (1350)
. .+......|+.. .|-.+.+-+|..+..+...+... +
T Consensus 405 ~------~~I~~i~~~Ilt-----~D~~~~~~~iKm~Tkl~e~l~~E-----------------------e--------- 441 (516)
T KOG2956|consen 405 L------QCIVNISPLILT-----ADEPRAVAVIKMLTKLFERLSAE-----------------------E--------- 441 (516)
T ss_pred h------hHHHHHhhHHhc-----CcchHHHHHHHHHHHHHhhcCHH-----------------------H---------
Confidence 2 233333333332 34457777776665444333110 0
Q ss_pred chhhHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHcC-CCCCh
Q 000688 912 NSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHG-HLFPR 955 (1350)
Q Consensus 912 ~~~lW~pLL~~L~~l~~d~R~eVR~~AlqtLF~iL~~~G-~~f~~ 955 (1350)
...+---+.=++...+...-..||+.|+=.|-.+...-| ..+.|
T Consensus 442 L~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~meP 486 (516)
T KOG2956|consen 442 LLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEP 486 (516)
T ss_pred HHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhh
Confidence 000001123334444556678899999999988888777 55544
No 38
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=57.78 E-value=4.6e+02 Score=32.59 Aligned_cols=270 Identities=16% Similarity=0.207 Sum_probs=128.3
Q ss_pred HHHHHHHHHHhcCCc-cHhHHHHHHHHHHHHHHHhcchhh-hhhhhhhhhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 000688 709 WNVLSDFFVSVGLSE-NLSVAIFVMDSLRQLAMKFLEREE-LANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVL 786 (1350)
Q Consensus 709 W~~l~~~f~~v~~~~-n~~v~~~AidsLrqLs~kfLe~eE-L~~f~fQ~~fL~Pf~~im~~~~~~eIre~iL~cl~~~l~ 786 (1350)
-++|...+..++-+| |+...-|..+++--+ +|+..... -.--.|...++-||..|+++... |.-.-|.+-+.+|++
T Consensus 69 l~~L~~il~~v~kNPsnP~FnHylFEsi~~l-ir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~-EF~PYvfQIla~Lle 146 (435)
T PF03378_consen 69 LQHLTAILKEVSKNPSNPRFNHYLFESIGAL-IRFVCEADPEAVSQFEEALFPPFQEILQQDVQ-EFIPYVFQILAQLLE 146 (435)
T ss_dssp HHHHHHHHHHHHTS---HHHHHHHHHHHHHH-HHHS-GGGHH---HHHHHHHHHHHHHHHTT-T-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcchhhhHHHHHHHH-HHhccCCChhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 344555555555554 456666766776643 45543211 11224677788889988876533 566678888899999
Q ss_pred hcc-ccccCChHHHHHHHHHhhcc----chHHHHHHHHHHHHHHHHhhcCCccccccchHHHHHHHHHHHHcCCCCcccc
Q 000688 787 SRV-SNVKSGWKSVFSIFTAAAAD----ERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNSDVC 861 (1350)
Q Consensus 787 ~~~-~~I~SGWk~IF~il~~aa~~----~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~~~~d~niS 861 (1350)
.+. ..+-.....+|..|-.+.-- .-|.+|+ .++-+++..-..+.. .+....+...+-+-..++. -.
T Consensus 147 ~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvr----LL~a~i~k~~~~i~~--~~~l~~iLgvFQkLi~sk~---~D 217 (435)
T PF03378_consen 147 LRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVR----LLQAYIKKDPSFIVA--NNQLEPILGVFQKLIASKA---ND 217 (435)
T ss_dssp HSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHH----HHHHHHHHHGGG------S-CHHHHHHHHHHHT-TT---CH
T ss_pred cCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHH----HHHHHHHhCchhhcc--hhhHHHHHHHHHHHHCCCC---cc
Confidence 887 56655666677666665432 2233333 222222221111110 1222222222222222221 11
Q ss_pred HHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhHHHHHHHHhhhcCCChHHHHHHHHHH
Q 000688 862 LNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTSDSRSTIRKSSLEV 941 (1350)
Q Consensus 862 L~Ai~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~L~~l~~d~R~eVR~~Alqt 941 (1350)
-.+..+|..+..++....+ ..-...+|..+|..|..-=+ ....++=+..
T Consensus 218 ~~gF~LL~~iv~~~p~~~l----------------------------~~yl~~I~~lll~RLq~skT---~kf~~~fv~F 266 (435)
T PF03378_consen 218 HYGFDLLESIVENLPPEAL----------------------------EPYLKQIFTLLLTRLQSSKT---EKFVKRFVVF 266 (435)
T ss_dssp HHHHHHHHHHHHHS-HHHH----------------------------GGGHHHHHHHHHHHHHHC-----HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCHHHH----------------------------HHHHHHHHHHHHHHHhhCCc---HHHHHHHHHH
Confidence 2333444433333210000 00123578888888776311 2233333322
Q ss_pred HHHHHHHcCC--------CCChhhHHHHHHHHHHHhHhhhhcccCCCCCCCCCCCCCCCCCCcccccHHHhHHHHHHHHH
Q 000688 942 LFNILKDHGH--------LFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGAECLV 1013 (1350)
Q Consensus 942 LF~iL~~~G~--------~f~~~~W~~i~~~VLfPi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~eT~~~al~~l~ 1013 (1350)
+.-+...||. ..-+..|..++.+++.|-++.+... .-...+.=|++
T Consensus 267 ~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~--------------------------~erKi~~vGlt 320 (435)
T PF03378_consen 267 LSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGP--------------------------IERKICAVGLT 320 (435)
T ss_dssp HHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SH--------------------------HHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCc--------------------------chhhHHHHHHH
Confidence 2222233442 2245678888888888877765431 11333444555
Q ss_pred HHHHH---HHHhHHhhHHHHHHHHHHhhccCCcchh
Q 000688 1014 DIFIC---FFDVVRSQLPGVVSILTGFIRSPIQGPA 1046 (1350)
Q Consensus 1014 ~lf~~---yf~~l~~~l~~~L~lL~~~i~~~~~~la 1046 (1350)
++... +.+....+|..+++-|...+..+.+..+
T Consensus 321 kLL~es~~~~~~~~~~w~~ll~~Ll~ll~~p~~~~~ 356 (435)
T PF03378_consen 321 KLLCESPAFLSEYSQLWPPLLEALLKLLERPPEASA 356 (435)
T ss_dssp HHHHSSTTHHHH-CHHHHHHHHHHHHHHHTTSTT-S
T ss_pred HHHhccHhhhhHHHHHHHHHHHHHHHHHcCCccccc
Confidence 65542 3333456788888887777777665544
No 39
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=50.93 E-value=2e+02 Score=30.87 Aligned_cols=153 Identities=13% Similarity=0.188 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhHHHHHH
Q 000688 842 TDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLT 921 (1350)
Q Consensus 842 ~d~I~cL~~F~~~~~d~niSL~Ai~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~ 921 (1350)
.-+|.||.. ++++-+.+..|+.+...++..-+.+ . ..-|.-|..
T Consensus 6 plLIsCL~~-------q~~k~s~~KiL~~iVs~Va~~v~~~-------------------------~----~~~W~eL~d 49 (174)
T PF04510_consen 6 PLLISCLTM-------QETKESDFKILRRIVSHVAYEVFDL-------------------------Q----EGGWDELSD 49 (174)
T ss_pred HHHHHHHHh-------hcccHhHHHHHHHHHHHHHHHHHhc-------------------------C----CCCchhHHH
Confidence 346777765 5677777788887777766442211 1 123444445
Q ss_pred HHhhhcCCChHHHHHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhHhhhhcccCCCCCCCCCCCCCCCCCCcccccH
Q 000688 922 GLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWD 1001 (1350)
Q Consensus 922 ~L~~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 1001 (1350)
++..+... .+ .+|..+|.+.=..+ ..+|-...++. |+|-+......++ ..+.
T Consensus 50 ~Ils~~~~-e~---~kA~~IF~~L~~~l----~~efl~~~~~~-L~~~~~~~L~~p~---------------~~d~---- 101 (174)
T PF04510_consen 50 CILSLSEN-EP---VKAFHIFICLPMPL----YGEFLIPFMEN-LLPEISKVLLPPE---------------EVDV---- 101 (174)
T ss_pred HHHHhhcc-ch---HHHHHHHHhCCchh----hhhHHHHHHHH-HHHHHHHHcCCch---------------hccH----
Confidence 54444321 11 45666555432111 23333344443 4455555444221 2233
Q ss_pred HHhHHHHHHHHHHHHHHHHHh------HHhhHHHHHHHHHHhhccCCc-chhHHHHHHHHHHHHh
Q 000688 1002 SETAAIGAECLVDIFICFFDV------VRSQLPGVVSILTGFIRSPIQ-GPASTGVAALLHLAGE 1059 (1350)
Q Consensus 1002 ~eT~~~al~~l~~lf~~yf~~------l~~~l~~~L~lL~~~i~~~~~-~la~ig~~~l~~Ll~~ 1059 (1350)
+..++|+.+.+..+.|..+. +..++..+++-+.+.+..+.+ +..+=|-.-++.++..
T Consensus 102 -~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~~l~rgl~~~e~~v~~ 165 (174)
T PF04510_consen 102 -EDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVGFLRRGLRDFESFVSR 165 (174)
T ss_pred -HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 34458999988888886643 445556666666777778998 8888888888887764
No 40
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=50.04 E-value=1.7e+02 Score=34.15 Aligned_cols=105 Identities=19% Similarity=0.304 Sum_probs=69.1
Q ss_pred HHHHHHHHHhcCCccHhHHHHHHHHHHHHHHHhcchhhhhhhhhhhhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHhcc
Q 000688 710 NVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRV 789 (1350)
Q Consensus 710 ~~l~~~f~~v~~~~n~~v~~~AidsLrqLs~kfLe~eEL~~f~fQ~~fL~Pf~~im~~~~~~eIre~iL~cl~~~l~~~~ 789 (1350)
+.+..+..-...|++..||..|+.+|...+ .+++ ++ -.+++.-|...+.. .+.+|+-..++++..++..+|
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~--Lld~-~~-----a~~~l~l~~~~~~~-~~~~v~~~al~~l~Dll~~~g 96 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCC--LLDK-EL-----AKEHLPLFLQALQK-DDEEVKITALKALFDLLLTHG 96 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH--HhCh-HH-----HHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcC
Confidence 445555556777888899999999988766 4443 22 33444556666633 488999999999999999999
Q ss_pred ccccCChH---------HHHHHHHHhhccchHHHHHHHHHHHH
Q 000688 790 SNVKSGWK---------SVFSIFTAAAADERKNIVLLAFETME 823 (1350)
Q Consensus 790 ~~I~SGWk---------~IF~il~~aa~~~~~~iV~~aF~~l~ 823 (1350)
..+-..+. .+..+|.....+.++++-..|-+.+-
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~ 139 (298)
T PF12719_consen 97 IDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLC 139 (298)
T ss_pred chhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 77655443 35555555554444444444444433
No 41
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=49.33 E-value=2.7e+02 Score=33.01 Aligned_cols=128 Identities=9% Similarity=0.164 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhccccccCChHHHHHHHHHhh-----c--cchHHHHHHHHHHHHHHHHhhcCCccccccchHHHHHHHHH
Q 000688 777 IIRCISQMVLSRVSNVKSGWKSVFSIFTAAA-----A--DERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLL 849 (1350)
Q Consensus 777 iL~cl~~~l~~~~~~I~SGWk~IF~il~~aa-----~--~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~ 849 (1350)
||.|+..++..-++.+...=..|++.+=.+. + ...|+.-..=|..++.|+..+++.+....++.|..+++++
T Consensus 92 vL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi- 170 (319)
T PF08767_consen 92 VLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSI- 170 (319)
T ss_dssp HHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHH-
Confidence 6788888888777777777676665332221 1 2467888888999999999877654332378999999999
Q ss_pred HHHcCCCCccccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhHHHHHHHHhhhcCC
Q 000688 850 TFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTSD 929 (1350)
Q Consensus 850 ~F~~~~~d~niSL~Ai~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~L~~l~~d 929 (1350)
..+-+..+.+|+-.++..+......+....- + ....-+..+++.+|...-.+.+|
T Consensus 171 ~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~--------------------~-----~~~~F~~~y~~~il~~if~vltD 225 (319)
T PF08767_consen 171 VWGFKHTNREISETGLNILLELLNNVSKTNP--------------------E-----FANQFYQQYYLDILQDIFSVLTD 225 (319)
T ss_dssp HHHHTSSSHHHHHHHHHHHHHHHHHHHH-SH--------------------H-----HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHHHHHhcCH--------------------H-----HHHHHHHHHHHHHHHHHHHHHHC
Confidence 5565555678998888887766665542100 0 01112556778888877777666
Q ss_pred C
Q 000688 930 S 930 (1350)
Q Consensus 930 ~ 930 (1350)
+
T Consensus 226 ~ 226 (319)
T PF08767_consen 226 S 226 (319)
T ss_dssp T
T ss_pred c
Confidence 4
No 42
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=47.01 E-value=1.2e+02 Score=29.42 Aligned_cols=73 Identities=15% Similarity=0.297 Sum_probs=54.8
Q ss_pred hhhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCChHHHHHHHHHhhccchHHHHHHHHHHHHHHHHh
Q 000688 754 QNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIVLLAFETMEKIVRE 828 (1350)
Q Consensus 754 Q~~fL~Pf~~im~~~~~~eIre~iL~cl~~~l~~~~~~I~SGWk~IF~il~~aa~~~~~~iV~~aF~~l~~I~~d 828 (1350)
-+.+++|...-+ ...+..||....+++.++.....+.+-.--..||..|.....|.+++ |+.|-+.+...++|
T Consensus 25 l~~Il~pVL~~~-~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~-Vr~~a~~Ld~llkd 97 (97)
T PF12755_consen 25 LDEILPPVLKCF-DDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDEN-VRSAAELLDRLLKD 97 (97)
T ss_pred HHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh-HHHHHHHHHHHhcC
Confidence 356677766543 34678899999999999998876666557788999988888887776 67776777655543
No 43
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=47.00 E-value=2.6e+02 Score=34.52 Aligned_cols=114 Identities=11% Similarity=0.150 Sum_probs=74.1
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhHhhhhcccCCCCCCCCCCCCCCCCCCccc
Q 000688 919 LLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGS 998 (1350)
Q Consensus 919 LL~~L~~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 998 (1350)
+..-|..+..+++.+-|++|+.-|..++. -+.|+- |+..|.++|.-+|+.+....+
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~--e~sfsv--Weq~f~~iL~~l~EvL~d~~~-------------------- 343 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLC--EGSFSV--WEQHFAEILLLLLEVLSDSED-------------------- 343 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHH--ccchhH--HHHHHHHHHHHHHHHHccchh--------------------
Confidence 34444455567899999999999999887 345555 999999999999998865110
Q ss_pred ccHHHhHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHh
Q 000688 999 TWDSETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGE 1059 (1350)
Q Consensus 999 ~W~~eT~~~al~~l~~lf~~yf~~l~~~l~~~L~lL~~~i~~~~~~la~ig~~~l~~Ll~~ 1059 (1350)
..-..+||+.+.++.++-=+.+-.--.-...-+.++-+..++++.+.+..|.-+++.+
T Consensus 344 ---~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las 401 (516)
T KOG2956|consen 344 ---EIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLAS 401 (516)
T ss_pred ---hHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHh
Confidence 1345678888887766533333222122223334566667777777777776444443
No 44
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=46.01 E-value=90 Score=30.01 Aligned_cols=109 Identities=18% Similarity=0.128 Sum_probs=64.9
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhHhhhhcccCCCCCCCCCCCCCCCCCCcccc
Q 000688 920 LTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGST 999 (1350)
Q Consensus 920 L~~L~~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 999 (1350)
+..|.+++.+...++|..|+.+|..+-.. .++.+..+...=.+|.+-.+.... +
T Consensus 9 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~-----~~~~~~~~~~~~~i~~l~~~l~~~------------------~--- 62 (120)
T cd00020 9 LPALVSLLSSSDENVQREAAWALSNLSAG-----NNDNIQAVVEAGGLPALVQLLKSE------------------D--- 62 (120)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHhcC-----CHHHHHHHHHCCChHHHHHHHhCC------------------C---
Confidence 44455566677799999999998886653 256677777733445555443310 0
Q ss_pred cHHHhHHHHHHHHHHHHHHHHHhHHhhH-HHHHHHHHHhhccCCcchhHHHHHHHHHH
Q 000688 1000 WDSETAAIGAECLVDIFICFFDVVRSQL-PGVVSILTGFIRSPIQGPASTGVAALLHL 1056 (1350)
Q Consensus 1000 W~~eT~~~al~~l~~lf~~yf~~l~~~l-~~~L~lL~~~i~~~~~~la~ig~~~l~~L 1056 (1350)
......|+..+..+-...-.....++ .+++..|..++..++..+.+.++.+|.+|
T Consensus 63 --~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 63 --EEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred --HHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 13334444444444222212222233 34677777888888888888888888765
No 45
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=45.65 E-value=1.1e+02 Score=28.83 Aligned_cols=54 Identities=13% Similarity=0.138 Sum_probs=49.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHhhccCCcchhHHHHHHHHH
Q 000688 1002 SETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLH 1055 (1350)
Q Consensus 1002 ~eT~~~al~~l~~lf~~yf~~l~~~l~~~L~lL~~~i~~~~~~la~ig~~~l~~ 1055 (1350)
.+...+.++.+..+...+.+.+..-|+-+++.|......+++.+.+.|-.|++.
T Consensus 32 ~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 32 IDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 377888999999999999999999999999999999999999999999998863
No 46
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=45.00 E-value=1.1e+02 Score=32.81 Aligned_cols=92 Identities=10% Similarity=0.064 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhHhhhhcccCCCCCCCCCCCCCCCCCCcccccHHHhHHHHHHH
Q 000688 932 STIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGAEC 1011 (1350)
Q Consensus 932 ~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~eT~~~al~~ 1011 (1350)
+.||+.|+-++-++...|+....+ |-. .++..+.. + . ..-+..|+..
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~--~~~-------~l~~~L~D-------------------~----~-~~VR~~al~~ 48 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEP--YLP-------NLYKCLRD-------------------E----D-PLVRKTALLV 48 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHh--HHH-------HHHHHHCC-------------------C----C-HHHHHHHHHH
Confidence 789999999999999999776655 322 22222221 1 1 2556667777
Q ss_pred HHHHHHHHHHhHHhhHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHh
Q 000688 1012 LVDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGE 1059 (1350)
Q Consensus 1012 l~~lf~~yf~~l~~~l~~~L~lL~~~i~~~~~~la~ig~~~l~~Ll~~ 1059 (1350)
+..|..+-+-... ..++..+..|+.-++++|+..+..+|.++...
T Consensus 49 Ls~Li~~d~ik~k---~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 49 LSHLILEDMIKVK---GQLFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHcCceeeh---hhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 7777665333333 23335555677999999999999999999887
No 47
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=44.87 E-value=1.1e+02 Score=32.02 Aligned_cols=80 Identities=14% Similarity=0.285 Sum_probs=50.1
Q ss_pred CCccHhHHHHHHHHHHHHHHHhcc---hhhhhhhhhhhhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCChH
Q 000688 721 LSENLSVAIFVMDSLRQLAMKFLE---REELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWK 797 (1350)
Q Consensus 721 ~~~n~~v~~~AidsLrqLs~kfLe---~eEL~~f~fQ~~fL~Pf~~im~~~~~~eIre~iL~cl~~~l~~~~~~I~SGWk 797 (1350)
.|+|.++..+|+..|.-++ +--. ..|++. ++|+..+..+.....+.+|++.+++.|.+ |.
T Consensus 47 ~~~n~~v~l~AL~LLe~~v-kNCG~~fh~evas----k~Fl~eL~kl~~~~~~~~Vk~kil~li~~------------W~ 109 (144)
T cd03568 47 NHKDPNVQLRALTLLDACA-ENCGKRFHQEVAS----RDFTQELKKLINDRVHPTVKEKLREVVKQ------------WA 109 (144)
T ss_pred cCCCHHHHHHHHHHHHHHH-HHCCHHHHHHHhh----HHHHHHHHHHhcccCCHHHHHHHHHHHHH------------HH
Confidence 4788899998886555433 2111 122222 56777777777766889999999988874 66
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHH
Q 000688 798 SVFSIFTAAAADERKNIVLLAFETME 823 (1350)
Q Consensus 798 ~IF~il~~aa~~~~~~iV~~aF~~l~ 823 (1350)
.-|. .+.+-..+..+|+.|+
T Consensus 110 ~~f~------~~~~l~~i~~~y~~L~ 129 (144)
T cd03568 110 DEFK------NDPSLSLMSDLYKKLK 129 (144)
T ss_pred HHhC------CCcccHHHHHHHHHHH
Confidence 5554 2233345666666554
No 48
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.56 E-value=3.1e+02 Score=35.32 Aligned_cols=154 Identities=16% Similarity=0.224 Sum_probs=99.9
Q ss_pred HHHHHHHHhchhhhcCCCCCCcchHHHHHHHHhhcccccccch-hhhHHHHHHHHHHhcCCccHhHHHHHHHHHHHHHHH
Q 000688 663 AFVKALCKVSISELQSPTDPRVFSLTKLVEIAHYNMNRIRLVW-SRMWNVLSDFFVSVGLSENLSVAIFVMDSLRQLAMK 741 (1350)
Q Consensus 663 ~fv~AL~~vS~eel~~~~~pr~F~L~kLveva~~Nm~Ri~~~W-~~iW~~l~~~f~~v~~~~n~~v~~~AidsLrqLs~k 741 (1350)
+.+-+||++-..+-.....+.+=.|+|+-|=+- +++...| .+--+++.+-|.+...|+++.+|..|+.++.|..+-
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa---~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~ 204 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSA---QFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII 204 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhH---HHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec
Confidence 445566665332221122345556777765432 2233333 233467788888999999999999999999885421
Q ss_pred hcchhhhhhhhhh-hhhhhhHHHHHh--cCCcHHHHHHHHHHHHHHHHhccccccCChHHHHHHHHHhhccchHHHHHHH
Q 000688 742 FLEREELANYNFQ-NEFLRPFVIIMQ--KSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIVLLA 818 (1350)
Q Consensus 742 fLe~eEL~~f~fQ-~~fL~Pf~~im~--~~~~~eIre~iL~cl~~~l~~~~~~I~SGWk~IF~il~~aa~~~~~~iV~~a 818 (1350)
...-+ + +. ..|| +.++. +..+++||..|=+.+.-+++-+-+.+...-+.|.+-.-...+|.++++.--|
T Consensus 205 --~~qal--~-~~iD~Fl---e~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEA 276 (885)
T KOG2023|consen 205 --QTQAL--Y-VHIDKFL---EILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEA 276 (885)
T ss_pred --CcHHH--H-HHHHHHH---HHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHH
Confidence 11111 0 11 1233 44443 4568999999999999999999999999999998877777777788866666
Q ss_pred HHHHHHHHH
Q 000688 819 FETMEKIVR 827 (1350)
Q Consensus 819 F~~l~~I~~ 827 (1350)
.+-.--+..
T Consensus 277 CEFwla~ae 285 (885)
T KOG2023|consen 277 CEFWLALAE 285 (885)
T ss_pred HHHHHHHhc
Confidence 665544443
No 49
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.28 E-value=1.1e+03 Score=32.60 Aligned_cols=352 Identities=17% Similarity=0.205 Sum_probs=198.8
Q ss_pred cCCccHhHHHHHHHHHHHHHHHhcchhhhhhhhhhhhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCChHHH
Q 000688 720 GLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSV 799 (1350)
Q Consensus 720 ~~~~n~~v~~~AidsLrqLs~kfLe~eEL~~f~fQ~~fL~Pf~~im~~~~~~eIre~iL~cl~~~l~~~~~~I~SGWk~I 799 (1350)
+...+..+|.+|.--+|++..|+-++ ++. .-|..+...+..+..+-+...||..+-+.+.++-..-.+. +|+-+
T Consensus 46 ~~~~~p~~Rq~aaVl~Rkl~~~~w~~--l~~-e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e---~WPel 119 (1075)
T KOG2171|consen 46 ATSADPQVRQLAAVLLRKLLTKHWSR--LSA-EVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE---KWPEL 119 (1075)
T ss_pred hcCCChHHHHHHHHHHHHHHHHHhhc--CCH-HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc---chHHH
Confidence 34567889999988999999885542 111 1245555556666677788889988888888776554444 89999
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHhhcCCccccccchHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHhhcCC
Q 000688 800 FSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGG 879 (1350)
Q Consensus 800 F~il~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~~~~d~niSL~Ai~~l~~~~~~L~~~~ 879 (1350)
...|-.+..+.++..=..||-++..+...+=... ...+.++...|.+=...... .|-..|+.-+-..+.++-.
T Consensus 120 l~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~----~~~~~~l~~lf~q~~~d~s~-~vr~~a~rA~~a~~~~~~~-- 192 (1075)
T KOG2171|consen 120 LQFLFQSTKSPNPSLRESALLILSSLPETFGNTL----QPHLDDLLRLFSQTMTDPSS-PVRVAAVRALGAFAEYLEN-- 192 (1075)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc----chhHHHHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHhcc--
Confidence 9999999988888888889888876655442222 23344444444332222222 2444444444333332210
Q ss_pred cccccCCCCCCCCCCCCCCCCCcccCCCCccc--chhhHHH-HHHHHhhhcCCChHHHHHHHHHHHHHHHHHcCCCCChh
Q 000688 880 LVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDD--NSSFWVP-LLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQ 956 (1350)
Q Consensus 880 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lW~p-LL~~L~~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~ 956 (1350)
+++. ..+--+| ++..+.+++.+...+.-.+++..|-+++.+-+..|++.
T Consensus 193 ----------------------------~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~ 244 (1075)
T KOG2171|consen 193 ----------------------------NKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPH 244 (1075)
T ss_pred ----------------------------chHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHH
Confidence 0011 2234566 88888888888888888899999988888766555442
Q ss_pred hHHHHHHHHHHHhHhhhhcccCCCCCCCCCCCCCCCCCCcccccHHHhHHHHHHHHHHHHHHHHHhH----HhhHHHHHH
Q 000688 957 FWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGAECLVDIFICFFDVV----RSQLPGVVS 1032 (1350)
Q Consensus 957 ~W~~i~~~VLfPi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~eT~~~al~~l~~lf~~yf~~l----~~~l~~~L~ 1032 (1350)
+..||-=.+....+ .+ -...++..||..++.+-.. =... ..+...++-
T Consensus 245 -----l~~ii~~~l~Ia~n-------------------~~---l~~~~R~~ALe~ivs~~e~-Ap~~~k~~~~~~~~lv~ 296 (1075)
T KOG2171|consen 245 -----LSQIIQFSLEIAKN-------------------KE---LENSIRHLALEFLVSLSEY-APAMCKKLALLGHTLVP 296 (1075)
T ss_pred -----HHHHHHHHHHHhhc-------------------cc---ccHHHHHHHHHHHHHHHHh-hHHHhhhchhhhccHHH
Confidence 22222111111111 11 1236778888877765332 1111 112333333
Q ss_pred HHHHhhcc----------------CCcchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhhchhhHHHhhhcccc
Q 000688 1033 ILTGFIRS----------------PIQGPASTGVAALLHLAGELGSRLSQDEWREILLALKETTASTLPSFVKVLRTMND 1096 (1350)
Q Consensus 1033 lL~~~i~~----------------~~~~la~ig~~~l~~Ll~~~~~~f~~~~W~~i~~~~~~l~~~t~~~~~~~~~~~~~ 1096 (1350)
.+-.+|+- +.++.+++|..++-+|-...|++-- --.+...+..+...+-+..
T Consensus 297 ~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v---~p~~~~~l~~~l~S~~w~~--------- 364 (1075)
T KOG2171|consen 297 VLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQV---LPPLFEALEAMLQSTEWKE--------- 364 (1075)
T ss_pred HHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhe---hHHHHHHHHHHhcCCCHHH---------
Confidence 33344332 2356888888888888777554320 1111122221111111100
Q ss_pred ccCCCCCCccccccccCCCCCCCCCcchhhhhhhhH-HhhhhhhHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 000688 1097 IEIPNTSQSYADMEMDSDHGSINDNIDEDNLQTAAY-VVSRMKSHITLQLLSVQVAANLYKLHLRLLSTTNVKILLDIFS 1175 (1350)
Q Consensus 1097 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~k~~cvlqLllIq~~~eL~~~~~~~l~~~~l~~ll~~L~ 1175 (1350)
+.... .++.+---| +-.|+.-+++|+...-+.|...|-..=..+++
T Consensus 365 -------------------------------R~AaL~Als~i~EGc--~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~n 411 (1075)
T KOG2171|consen 365 -------------------------------RHAALLALSVIAEGC--SDVMIGNLPKILPIVLNGLNDPHPRVRYAALN 411 (1075)
T ss_pred -------------------------------HHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 00000 000000113 45577778888888888887777777778888
Q ss_pred HHhhhHhhhc
Q 000688 1176 SIASHAHELN 1185 (1350)
Q Consensus 1176 ~s~~fA~~fN 1185 (1350)
...+++-||-
T Consensus 412 aigQ~stdl~ 421 (1075)
T KOG2171|consen 412 AIGQMSTDLQ 421 (1075)
T ss_pred HHHhhhhhhc
Confidence 8888887663
No 50
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.45 E-value=1.2e+03 Score=32.22 Aligned_cols=423 Identities=14% Similarity=0.166 Sum_probs=219.4
Q ss_pred hhhhHHHHHhcCCcHHHHHHHHHHHHHHHHhccccc---cCChHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhhc---
Q 000688 757 FLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNV---KSGWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYF--- 830 (1350)
Q Consensus 757 fL~Pf~~im~~~~~~eIre~iL~cl~~~l~~~~~~I---~SGWk~IF~il~~aa~~~~~~iV~~aF~~l~~I~~d~l--- 830 (1350)
.|.|+.. ..+++..|...++.||..++.+++..- .+--..+|+++..++. ..|.+=..|-+.+..|..+--
T Consensus 97 ~l~~~~~--~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h-~~pkvRk~a~~~i~~VL~~p~~~~ 173 (1176)
T KOG1248|consen 97 ILAPFLT--AESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAH-KKPKVRKAAQRGIAAVLKGPPFAP 173 (1176)
T ss_pred HHHHHHh--hhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHcCCCCCc
Confidence 3444444 345677888999999999999865431 1222445666666664 567777778888888876421
Q ss_pred CCccccccchHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcc
Q 000688 831 PHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKD 910 (1350)
Q Consensus 831 ~~l~~~~~~~f~d~I~cL~~F~~~~~d~niSL~Ai~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 910 (1350)
+...+.-......|+.-+..+.. .+..-+-+..|..+-+-+.
T Consensus 174 ~~~HpA~~~vak~cl~~~e~~~~----~a~~t~v~~~L~Ll~~~~~---------------------------------- 215 (1176)
T KOG1248|consen 174 DAEHPASLSVAKFCLALIESKLG----SAENTTVLRSLMLLRDVLS---------------------------------- 215 (1176)
T ss_pred cccchHHHHHHHHHHHHHHhhhc----hHHHHHHHHHHHHHHHhhc----------------------------------
Confidence 11110001112222222222222 1111122222222222110
Q ss_pred cchhhH-HHHHHHHhh----hcCCChHHHHHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhHhhhhcccCCCCCCCC
Q 000688 911 DNSSFW-VPLLTGLSK----LTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEP 985 (1350)
Q Consensus 911 ~~~~lW-~pLL~~L~~----l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPi~~~l~~~~~~~~~~~~ 985 (1350)
. | .++...+.+ +++-..-.|+..++|+|-+.+..|...++.++-..++. -++ .+.. .. .
T Consensus 216 ---~-~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~----al~-~l~p--s~--~--- 279 (1176)
T KOG1248|consen 216 ---T-FPRPLIKSLCEVLLNITTESPVLVLLEVLQCLHSLFKKHPTALAAELNARLLT----ALM-TLSP--SE--N--- 279 (1176)
T ss_pred ---c-CCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHH----HHH-HhCC--Cc--c---
Confidence 0 1 244555544 45667789999999999999999988777655443322 111 1111 00 0
Q ss_pred CCCCCCCCCCcccccHHHhHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHhhCCCCC
Q 000688 986 DSPTSHSPLSEGSTWDSETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGSRLS 1065 (1350)
Q Consensus 986 ~~~~~~~~~~~~~~W~~eT~~~al~~l~~lf~~yf~~l~~~l~~~L~lL~~~i~~~~~~la~ig~~~l~~Ll~~~~~~f~ 1065 (1350)
...-...|+ .-++-|...+. +..-+.--..+++++.++..|..++++++...+..|+..++.....
T Consensus 280 -------D~~~t~~W~-~v~~~~~~~la---~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~--- 345 (1176)
T KOG1248|consen 280 -------DDLLTVAWL-KVLNEAHDILA---TLQEEKALQALPRLFSLFFTILESLIEELVQAASQSLKEILKESVT--- 345 (1176)
T ss_pred -------chHHHHHHH-HHHHHHHHHHH---HhCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCc---
Confidence 111234676 33332222222 2223333356889999999999999999999999999998887555
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHhhhccccccCCCCCCccccccccCCCCCCCCCcchhhhhhhhHHhhhhhhHHHHHH
Q 000688 1066 QDEWREILLALKETTASTLPSFVKVLRTMNDIEIPNTSQSYADMEMDSDHGSINDNIDEDNLQTAAYVVSRMKSHITLQL 1145 (1350)
Q Consensus 1066 ~~~W~~i~~~~~~l~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~cvlqL 1145 (1350)
+.+..+. .+. ...+. .|++-+ =-
T Consensus 346 ------~~~~~c~---~~~---~~~l~--------------------------------------------~kf~~~-~~ 368 (1176)
T KOG1248|consen 346 ------VIDALCS---KQL---HSLLD--------------------------------------------YKFHAV-WR 368 (1176)
T ss_pred ------ccHHHHH---HHH---HHHHc--------------------------------------------chHHHH-HH
Confidence 2222221 111 00000 000000 11
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHH---HhhhHhhhcCCHHHHHHHHHhhcccCCC--------CCCchhhhhH
Q 000688 1146 LSVQVAANLYKLHLRLLSTTNVKILLDIFSS---IASHAHELNSELVLQKKLQRVCLVLELS--------DPPMVHFENE 1214 (1350)
Q Consensus 1146 llIq~~~eL~~~~~~~l~~~~l~~ll~~L~~---s~~fA~~fN~~~~Lr~~L~k~g~~~~~~--------~PnLlkQE~~ 1214 (1350)
..+|.+.-+|+.... .+..++.+-|..|.. +..++++ ..|...+=-| +..|. +-|| .-|+.
T Consensus 369 ~ilqi~s~~fek~G~-~s~~~l~~~L~~l~~lr~~~d~~~~----~~ld~~IGSA--V~AmGPe~vL~~lpLnl-~~~s~ 440 (1176)
T KOG1248|consen 369 FILQILSALFEKCGE-LSGPELTKTLEGLCDLRASPDFFHK----LQLDQCIGSA--VRAMGPERVLTILPLNL-HAESL 440 (1176)
T ss_pred HHHHHHHHHHHHhhh-hcCHHHHHHHHHHHHhhcCCCCccH----HHHHHHHHHH--HHhhCHHHHHHHcchhc-ccccc
Confidence 124444555655544 444444444443332 4433332 2444333222 11111 1233 11222
Q ss_pred HH-HHHHHHHHHhhcCCCCcchHHhHHHHHHHHHHHHHHHHHccccchhHHHHhhhhhhhhhccCCchhhhhhhhhhhHH
Q 000688 1215 SY-QTYLNFLRDSLTGNPSASEELNIESHLVEACEMILQMYLNCTGQQKVKAVKQQRVVRWILPLGSARKEELAARTSLV 1293 (1350)
Q Consensus 1215 S~-~~~l~iL~~~~~d~~~~~~~~~~~~~L~~lc~~il~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~i~a~~pvv 1293 (1350)
+. -.+|--++|=|..+.+ -.-..+.++|+.+..-...-++..++. + .+...+..==+
T Consensus 441 ~~~RsWLLPvLR~~i~~A~---La~F~~~ivpla~sl~~K~~~l~~~~~-~------------------~~~~~tl~~QL 498 (1176)
T KOG1248|consen 441 SFTRSWLLPVLRDYIIGAS---LAFFTEYIVPLAMSLQLKAKKLKEAGS-Q------------------VSLYDTLVDQL 498 (1176)
T ss_pred ccchhHhHHHHHHhhccCc---HHHHHHHHHHHHHHHHHHHHhhhhccC-c------------------HHHHHHHHHHH
Confidence 11 1234555555554443 455677899999998887766666555 1 11222222223
Q ss_pred HHHHHHhhcCChHHHHHHhhhHhHHHHHHHcCCCCchhHHHHHHHHHH
Q 000688 1294 VSALRVLSGLERETFKKYLSNIFPLLIDLVRSEHSSREVQLVLGTMFQ 1341 (1350)
Q Consensus 1294 v~~L~~~~~l~~~~F~~~~~~~ypll~~Li~~~~~~~evr~aL~~~f~ 1341 (1350)
-+.|.|+|+.|-|. +.-.+..+|.++.-|... +|+|..+-.=++
T Consensus 499 W~LLP~FC~~P~Dl-~~sF~~la~~l~~al~~~---~elr~~Ic~sL~ 542 (1176)
T KOG1248|consen 499 WSLLPGFCNYPVDL-AESFTDLAPILGAALLKR---PELRETICNSLR 542 (1176)
T ss_pred HHhChhhhCCCccH-HHHHHHHHHHHHHHHhcc---hHhHHHHHHHHH
Confidence 34589999998875 334567777777777775 488887776664
No 51
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=36.90 E-value=1.7e+02 Score=30.43 Aligned_cols=58 Identities=17% Similarity=0.212 Sum_probs=35.5
Q ss_pred CCccHhHHHHHHHHHHHHHHHhcc--hhhhhhhhhhhhhhhhHHHHHhc-----CCcHHHHHHHHHHHH
Q 000688 721 LSENLSVAIFVMDSLRQLAMKFLE--REELANYNFQNEFLRPFVIIMQK-----SGSAEIRELIIRCIS 782 (1350)
Q Consensus 721 ~~~n~~v~~~AidsLrqLs~kfLe--~eEL~~f~fQ~~fL~Pf~~im~~-----~~~~eIre~iL~cl~ 782 (1350)
.|+|..+.++|+..|.-+..---. ..|++. ++||..+..++.. .++..|++.|++.+.
T Consensus 48 ~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas----~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~ 112 (139)
T cd03567 48 QSPQEKEALQALTVLEACMKNCGERFHSEVGK----FRFLNELIKLVSPKYLGSRTSEKVKTKIIELLY 112 (139)
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHh----HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHH
Confidence 478888999998665543311111 133333 4556555555542 367899999998876
No 52
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=35.44 E-value=3e+02 Score=36.65 Aligned_cols=154 Identities=17% Similarity=0.180 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHhccccccC-ChHHHHH-HHHHhhccchHHHHHHHHHHHHHHHHhhcCCccccccchHHHHHHHHH-
Q 000688 773 IRELIIRCISQMVLSRVSNVKS-GWKSVFS-IFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLL- 849 (1350)
Q Consensus 773 Ire~iL~cl~~~l~~~~~~I~S-GWk~IF~-il~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~- 849 (1350)
-|..+.+-+..+++.+-..|+| |=.-.|+ ++.++.++++|.-.-.+|..++.|.+--++.=+ ....+-|.+-|-.
T Consensus 143 ~R~~~~~Il~~~l~~~~~~l~s~~~D~~~~~f~~~~~GEKDPRnLml~F~l~~~i~s~~~~l~~--F~edlFeV~~CYFP 220 (1030)
T KOG1967|consen 143 ERLLQYEILEWFLDYRLEFLKSLGPDFLFTAFCKVVDGEKDPRNLMLVFSLVKEISSLNFPLGP--FTEDLFEVIACYFP 220 (1030)
T ss_pred HHhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcCCCCchhhHHHHHHHHHHhhccCCCCc--cHHHHHHHhheeee
Confidence 4666667777788889999999 8899998 888888889999999999999999884333222 1234444444432
Q ss_pred -HHHcCCCCccccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhHHHHHHHHhhhcC
Q 000688 850 -TFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTS 928 (1350)
Q Consensus 850 -~F~~~~~d~niSL~Ai~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~L~~l~~ 928 (1350)
.|.-.+.|.+. ...=++-..+...+ +..+.+..+-+|+|..= .+
T Consensus 221 I~Fkppk~D~~~-I~reDL~~sLr~al-------------------------------~stP~Fa~~~lp~LlEK---L~ 265 (1030)
T KOG1967|consen 221 ITFKPPKDDTIT-IRREDLKASLRSAL-------------------------------VSTPSFAPFALPLLLEK---LN 265 (1030)
T ss_pred eeccCCCCCccc-ccHHHHHHHHHHHH-------------------------------hcCccchhhHHHHHHHH---hc
Confidence 34444444321 11101111111111 12223455666755431 23
Q ss_pred CChHHHHHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 000688 929 DSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYS 963 (1350)
Q Consensus 929 d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~ 963 (1350)
++.+-++.-+++||-++...||..==..+|...+.
T Consensus 266 as~~~~K~DsL~~L~ec~~~ygv~~~~~~~~~lWs 300 (1030)
T KOG1967|consen 266 ASDPSAKVDSLDTLNECCLKYGVRRMLPAQKKLWS 300 (1030)
T ss_pred cccchhhhhHHHHHHHHHHHhCchhhhhhHHHHHH
Confidence 45567888999999999999995522223655444
No 53
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=34.87 E-value=2e+02 Score=29.87 Aligned_cols=58 Identities=22% Similarity=0.378 Sum_probs=37.9
Q ss_pred CCccHhHHHHHHHHHHHHHHHhcc--hhhhhhhhhhhhhhhhHHHHHhcCCcHHHHHHHHHHHH
Q 000688 721 LSENLSVAIFVMDSLRQLAMKFLE--REELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCIS 782 (1350)
Q Consensus 721 ~~~n~~v~~~AidsLrqLs~kfLe--~eEL~~f~fQ~~fL~Pf~~im~~~~~~eIre~iL~cl~ 782 (1350)
.|+|..+..+|+..|.-+..---. ..|++. ++|+..+..+....++..|++.+++.|.
T Consensus 51 ~~~n~~vql~AL~LLe~~vkNCG~~fh~evas----~~fl~~l~~l~~~~~~~~Vk~kil~li~ 110 (142)
T cd03569 51 LSKNPNVQLYALLLLESCVKNCGTHFHDEVAS----REFMDELKDLIKTTKNEEVRQKILELIQ 110 (142)
T ss_pred cCCChHHHHHHHHHHHHHHHHCCHHHHHHHhh----HHHHHHHHHHHcccCCHHHHHHHHHHHH
Confidence 457888888888666544311111 122222 5667777777766788999999998876
No 54
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=32.97 E-value=1.1e+03 Score=29.79 Aligned_cols=226 Identities=12% Similarity=0.079 Sum_probs=121.4
Q ss_pred hcCCcHHHHHHHHHHHHHHHHhcccccc--CChHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhhc--CCccccccchH
Q 000688 766 QKSGSAEIRELIIRCISQMVLSRVSNVK--SGWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYF--PHITETESTTF 841 (1350)
Q Consensus 766 ~~~~~~eIre~iL~cl~~~l~~~~~~I~--SGWk~IF~il~~aa~~~~~~iV~~aF~~l~~I~~d~l--~~l~~~~~~~f 841 (1350)
-.++++.||..++..|..++......+. .+ ..++..+-..-.+++.++.+.|-.++..+.+... ..+.. .+.
T Consensus 86 L~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~-~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~--~~~- 161 (503)
T PF10508_consen 86 LTHPSPKVRRLALKQLGRIARHSEGAAQLLVD-NELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFD--SNL- 161 (503)
T ss_pred hcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcC-ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhC--cch-
Confidence 3467889999999999988865533111 11 1134444444456778888999999988875321 11210 111
Q ss_pred HHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhHH--HH
Q 000688 842 TDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWV--PL 919 (1350)
Q Consensus 842 ~d~I~cL~~F~~~~~d~niSL~Ai~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lW~--pL 919 (1350)
+..|.....+..+ .+-+...+++..++. . +. +...... .+
T Consensus 162 ---~~~L~~l~~~~~~-~vR~Rv~el~v~i~~----~-----------------------------S~-~~~~~~~~sgl 203 (503)
T PF10508_consen 162 ---LSKLKSLMSQSSD-IVRCRVYELLVEIAS----H-----------------------------SP-EAAEAVVNSGL 203 (503)
T ss_pred ---HHHHHHHHhccCH-HHHHHHHHHHHHHHh----c-----------------------------CH-HHHHHHHhccH
Confidence 4445554433211 122233333222111 0 00 0111111 25
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhHhhhhcccCCCCCCCCCCCCCCCCCCcccc
Q 000688 920 LTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGST 999 (1350)
Q Consensus 920 L~~L~~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 999 (1350)
+..+-+...+++.=||-.|+++|-++-.+ ++-...+.+.=+++.+..+...... +.....
T Consensus 204 l~~ll~eL~~dDiLvqlnalell~~La~~------~~g~~yL~~~gi~~~L~~~l~~~~~--------------dp~~~~ 263 (503)
T PF10508_consen 204 LDLLLKELDSDDILVQLNALELLSELAET------PHGLQYLEQQGIFDKLSNLLQDSEE--------------DPRLSS 263 (503)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHcC------hhHHHHHHhCCHHHHHHHHHhcccc--------------CCcccc
Confidence 55555555568888999999999998762 2235666666666766666542211 110010
Q ss_pred cHHHhHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHhhccCCcchhHHHHHHHHHH
Q 000688 1000 WDSETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHL 1056 (1350)
Q Consensus 1000 W~~eT~~~al~~l~~lf~~yf~~l~~~l~~~L~lL~~~i~~~~~~la~ig~~~l~~L 1056 (1350)
+ -..-.+...+.++...-..+....+.++..+..++.+.+.+..-++..++-.+
T Consensus 264 -~--~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~i 317 (503)
T PF10508_consen 264 -L--LLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQI 317 (503)
T ss_pred -h--hhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 1 01111133333333222233445678888888888998888888888887544
No 55
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=30.73 E-value=4.7e+02 Score=25.34 Aligned_cols=94 Identities=13% Similarity=0.089 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhHhhhhcccCCCCCCCCCCCCCCCCCCcccccHHHhHHHHHHHHH
Q 000688 934 IRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGAECLV 1013 (1350)
Q Consensus 934 VR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~eT~~~al~~l~ 1013 (1350)
.|++++-.|-.+-..-|.. +...++.++-|++..+.. .+..+ -.....+|..++
T Consensus 2 ~R~ggli~Laa~ai~l~~~-----~~~~l~~Il~pVL~~~~D-------------------~d~rV--Ry~AcEaL~ni~ 55 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKD-----ISKYLDEILPPVLKCFDD-------------------QDSRV--RYYACEALYNIS 55 (97)
T ss_pred chhHHHHHHHHHHHHchHh-----HHHHHHHHHHHHHHHcCC-------------------CcHHH--HHHHHHHHHHHH
Confidence 4788888887776655544 788899999999977643 11111 123344555555
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHhhccCCcchhHHHHHHHHHHH
Q 000688 1014 DIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLA 1057 (1350)
Q Consensus 1014 ~lf~~yf~~l~~~l~~~L~lL~~~i~~~~~~la~ig~~~l~~Ll 1057 (1350)
+.+. +.+-..+.++++.|...+.-+++.+ +.|..-|-+|+
T Consensus 56 k~~~---~~~l~~f~~IF~~L~kl~~D~d~~V-r~~a~~Ld~ll 95 (97)
T PF12755_consen 56 KVAR---GEILPYFNEIFDALCKLSADPDENV-RSAAELLDRLL 95 (97)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHcCCchhH-HHHHHHHHHHh
Confidence 5443 3344456777777777777666664 44556665554
No 56
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=29.60 E-value=1.2e+03 Score=29.14 Aligned_cols=58 Identities=12% Similarity=0.158 Sum_probs=46.3
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHhhCCCCCHHHHHH
Q 000688 1014 DIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGSRLSQDEWRE 1071 (1350)
Q Consensus 1014 ~lf~~yf~~l~~~l~~~L~lL~~~i~~~~~~la~ig~~~l~~Ll~~~~~~f~~~~W~~ 1071 (1350)
.+...||..++..+-+++..+..|+-.....+-.-|..|+..|..+.+....++.|+.
T Consensus 280 ~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~ 337 (728)
T KOG4535|consen 280 TLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKA 337 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccc
Confidence 3455677777767777888888888888888888899999999999887777888875
No 57
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=28.15 E-value=6.9e+02 Score=28.98 Aligned_cols=132 Identities=15% Similarity=0.162 Sum_probs=72.6
Q ss_pred chhhHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHcC-CC---CChhhHHHHHHHHHHHhHhhhhcccCCCCCCCCCC
Q 000688 912 NSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHG-HL---FPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDS 987 (1350)
Q Consensus 912 ~~~lW~pLL~~L~~l~~d~R~eVR~~AlqtLF~iL~~~G-~~---f~~~~W~~i~~~VLfPi~~~l~~~~~~~~~~~~~~ 987 (1350)
....|--++=.+-.++-|..+++|-.+++.|-.++..-. .. |...-...+|.+.|+|.+-.+....
T Consensus 113 i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~t---------- 182 (282)
T PF10521_consen 113 ISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPIT---------- 182 (282)
T ss_pred HHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCC----------
Confidence 445665566666667779999999999999999998433 22 2333345555566666665553211
Q ss_pred CCCCCCCCcccccHHHhHHHHHHHHHHHHHHH--------HHhHHhhHH-HHHHHHHHhhccCCcchhHHHHHHHHHHHH
Q 000688 988 PTSHSPLSEGSTWDSETAAIGAECLVDIFICF--------FDVVRSQLP-GVVSILTGFIRSPIQGPASTGVAALLHLAG 1058 (1350)
Q Consensus 988 ~~~~~~~~~~~~W~~eT~~~al~~l~~lf~~y--------f~~l~~~l~-~~L~lL~~~i~~~~~~la~ig~~~l~~Ll~ 1058 (1350)
.++ +.. .-...|...+..|+..- ...+...+. .+|.-+..+..-++..+...-...+..++.
T Consensus 183 ------p~~--~s~-~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~ 253 (282)
T PF10521_consen 183 ------PED--ESL-ELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIID 253 (282)
T ss_pred ------Cch--hhH-HHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHH
Confidence 111 122 33444555555554421 122222221 133333333333357788888888777777
Q ss_pred hhCC
Q 000688 1059 ELGS 1062 (1350)
Q Consensus 1059 ~~~~ 1062 (1350)
.-|.
T Consensus 254 ~lGi 257 (282)
T PF10521_consen 254 ELGI 257 (282)
T ss_pred Hhcc
Confidence 6554
No 58
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=28.10 E-value=1.3e+02 Score=27.53 Aligned_cols=71 Identities=14% Similarity=0.229 Sum_probs=46.2
Q ss_pred CCccHhHHHHHHHHHHHHHHHhcchhhhhhhhhhhhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCChHHHH
Q 000688 721 LSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVF 800 (1350)
Q Consensus 721 ~~~n~~v~~~AidsLrqLs~kfLe~eEL~~f~fQ~~fL~Pf~~im~~~~~~eIre~iL~cl~~~l~~~~~~I~SGWk~IF 800 (1350)
.+++..++..|+..|.++. ..+.+.++...+ ...++.||..++..+.++ |.+.++
T Consensus 10 ~~~~~~vr~~a~~~L~~~~--------------~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i----------~~~~~~ 64 (88)
T PF13646_consen 10 NDPDPQVRAEAARALGELG--------------DPEAIPALIELL-KDEDPMVRRAAARALGRI----------GDPEAI 64 (88)
T ss_dssp TSSSHHHHHHHHHHHHCCT--------------HHHHHHHHHHHH-TSSSHHHHHHHHHHHHCC----------HHHHTH
T ss_pred cCCCHHHHHHHHHHHHHcC--------------CHhHHHHHHHHH-cCCCHHHHHHHHHHHHHh----------CCHHHH
Confidence 5788889988887776321 123455566655 568899999999999865 445566
Q ss_pred HHHHHhhccchHHHHH
Q 000688 801 SIFTAAAADERKNIVL 816 (1350)
Q Consensus 801 ~il~~aa~~~~~~iV~ 816 (1350)
..|.....+.....|+
T Consensus 65 ~~L~~~l~~~~~~~vr 80 (88)
T PF13646_consen 65 PALIKLLQDDDDEVVR 80 (88)
T ss_dssp HHHHHHHTC-SSHHHH
T ss_pred HHHHHHHcCCCcHHHH
Confidence 6666655544444443
No 59
>PF08427 DUF1741: Domain of unknown function (DUF1741); InterPro: IPR013636 This is a eukaryotic domain of unknown function.
Probab=27.61 E-value=9.5e+02 Score=27.31 Aligned_cols=104 Identities=19% Similarity=0.216 Sum_probs=61.7
Q ss_pred cchhhHHHHHHHHhhhcCCC-----hHHHHHHHHH--HHHHHHHHcCCCC--ChhhHHHHHHHHHH--HhHhhhhcccCC
Q 000688 911 DNSSFWVPLLTGLSKLTSDS-----RSTIRKSSLE--VLFNILKDHGHLF--PRQFWMGVYSHVIF--PIFNGVCDKKDM 979 (1350)
Q Consensus 911 ~~~~lW~pLL~~L~~l~~d~-----R~eVR~~Alq--tLF~iL~~~G~~f--~~~~W~~i~~~VLf--Pi~~~l~~~~~~ 979 (1350)
.|..+|--|+.-+.-+++.. .+.|..-+.+ .+|....++|+.| +|+.-+..|-+++- |+|+.+......
T Consensus 58 ~W~eLW~aLlsLl~Fl~~~~~~l~~~~~i~~L~~~vv~l~n~~is~GDtFLPsp~~yDdL~YelVr~~~v~~~~~~~~~~ 137 (237)
T PF08427_consen 58 HWSELWRALLSLLRFLTTYESDLKDSPDIFQLAEQVVNLFNFFISYGDTFLPSPASYDDLFYELVRSGQVFDKFRDMYLR 137 (237)
T ss_pred cHHHHHHHHHHHHHHHHhchhhhhcccChHHHHHHHHHHHHHHHHhccccCCChHHHHhHHHHhHhchHHHHHHHHHHhh
Confidence 48889988877666664332 2344444444 3488888999998 77778887766653 455555432221
Q ss_pred CCCCCCCCCCCCCCCCcccccHHHhHHHHHHHHHHHHHHHHHhHH
Q 000688 980 PDKDEPDSPTSHSPLSEGSTWDSETAAIGAECLVDIFICFFDVVR 1024 (1350)
Q Consensus 980 ~~~~~~~~~~~~~~~~~~~~W~~eT~~~al~~l~~lf~~yf~~l~ 1024 (1350)
.... ...+.+.+. .....++..+..+-.||-..+.
T Consensus 138 ~~~~---------~~~~~~~~~-~~~~~sl~nl~~I~~Hf~~ki~ 172 (237)
T PF08427_consen 138 SSTS---------SSSEYKDSS-DKLTNSLDNLRSIISHFESKIE 172 (237)
T ss_pred ccCC---------Cccccccch-hHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 112333332 5567788888777777655554
No 60
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=27.60 E-value=8.6e+02 Score=26.79 Aligned_cols=163 Identities=12% Similarity=0.101 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhHhhhcCCHHHHHHHHHhhcccCCCC-------C-Cchh----hh
Q 000688 1145 LLSVQVAANLYKLHLRLLSTTNVKILLDIFSSIASHAHELNSELVLQKKLQRVCLVLELSD-------P-PMVH----FE 1212 (1350)
Q Consensus 1145 LllIq~~~eL~~~~~~~l~~~~l~~ll~~L~~s~~fA~~fN~~~~Lr~~L~k~g~~~~~~~-------P-nLlk----QE 1212 (1350)
-..++.+..+|+..... ....+..++..|.+-.... +|....++...+=.|- +.|.+ | |+-. ++
T Consensus 18 ~~vl~v~s~lf~~lg~~-~~~~l~~~L~~l~~lr~~~-~f~~~~~~e~~lgaAi--~amGpe~vL~~lPLnl~~~~~~~~ 93 (198)
T PF08161_consen 18 PEVLNVLSALFEKLGER-SSPLLKPILKTLGDLRESE-DFSFRKELEQVLGAAI--RAMGPEQVLSILPLNLDNADDSQP 93 (198)
T ss_pred HHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHHHcCC-CcchHHHHHHHHHHHH--HHCCHHHHHHHCCCCccCCCcCCc
Confidence 34456666677766644 4455555555555543222 2555555555444331 11111 1 2221 22
Q ss_pred hHHHHHHHHHHHHhhcCCCCcchHHhHHHHHHHHHHHHHHHHHccccchhHHHHhhhhhhhhhccCCchhhhhhhhhhhH
Q 000688 1213 NESYQTYLNFLRDSLTGNPSASEELNIESHLVEACEMILQMYLNCTGQQKVKAVKQQRVVRWILPLGSARKEELAARTSL 1292 (1350)
Q Consensus 1213 ~~S~~~~l~iL~~~~~d~~~~~~~~~~~~~L~~lc~~il~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~i~a~~pv 1292 (1350)
.-+ |+--++|-|..+. +-.--.+.++|+....-+.-.+....+. ..+...|.-+
T Consensus 94 ~ra---WLLPlLr~~i~~~---~L~fF~~~~lPla~~~~~~~~~~~~~~~--------------------~~~ak~~~~l 147 (198)
T PF08161_consen 94 GRA---WLLPLLRDHIRNA---SLSFFVEEFLPLARRLRQKAQKASEAGK--------------------SVEAKIYETL 147 (198)
T ss_pred ccc---hhHHHHHHhccCC---ChHHHHHHHHHHHHHHHHHHHHHhhccc--------------------hHHHHHHHHH
Confidence 333 3445555454333 3345666788888776555443222222 2333445556
Q ss_pred HHH---HHHHhhcCChHHHHHHhhhHhHHHHHHHcCCCCchhHHHHHHHHHH
Q 000688 1293 VVS---ALRVLSGLERETFKKYLSNIFPLLIDLVRSEHSSREVQLVLGTMFQ 1341 (1350)
Q Consensus 1293 vv~---~L~~~~~l~~~~F~~~~~~~ypll~~Li~~~~~~~evr~aL~~~f~ 1341 (1350)
+.. .|.++|+.+.|.= ...+.|-++++.++... +|+|..+-.-++
T Consensus 148 ~~QlWslLP~FC~~P~D~~-~~F~~~a~~L~~~L~~~---~~LR~~Ic~aL~ 195 (198)
T PF08161_consen 148 VQQLWSLLPGFCNYPTDLA-ESFPSFAKLLGNALYDQ---PDLRPIICQALR 195 (198)
T ss_pred HHHHHHHhHHhcCCcccHH-HHHHHHHHHHHHHHhcC---cchHHHHHHHHH
Confidence 555 4999999987654 44499999999999886 589988877765
No 61
>PRK09687 putative lyase; Provisional
Probab=26.53 E-value=9.7e+02 Score=27.80 Aligned_cols=92 Identities=14% Similarity=0.119 Sum_probs=55.4
Q ss_pred HHHhcCCccHhHHHHHHHHHHHHHHHhcchhhhhhhhhhhhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCC
Q 000688 716 FVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSG 795 (1350)
Q Consensus 716 f~~v~~~~n~~v~~~AidsLrqLs~kfLe~eEL~~f~fQ~~fL~Pf~~im~~~~~~eIre~iL~cl~~~l~~~~~~I~SG 795 (1350)
+...-.|++..|+..|+..|+++. . .+.+.++..+ .++.++.+|...+..|.++-.... +
T Consensus 28 L~~~L~d~d~~vR~~A~~aL~~~~-----~---------~~~~~~l~~l-l~~~d~~vR~~A~~aLg~lg~~~~-----~ 87 (280)
T PRK09687 28 LFRLLDDHNSLKRISSIRVLQLRG-----G---------QDVFRLAIEL-CSSKNPIERDIGADILSQLGMAKR-----C 87 (280)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcC-----c---------chHHHHHHHH-HhCCCHHHHHHHHHHHHhcCCCcc-----c
Confidence 344447888889988888877643 1 1222333332 456788999999999988622111 1
Q ss_pred hHHHHHHHHHh-hccchHHHHHHHHHHHHHHHH
Q 000688 796 WKSVFSIFTAA-AADERKNIVLLAFETMEKIVR 827 (1350)
Q Consensus 796 Wk~IF~il~~a-a~~~~~~iV~~aF~~l~~I~~ 827 (1350)
=..++..|... ..|+++.+-..|...+-.+..
T Consensus 88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~ 120 (280)
T PRK09687 88 QDNVFNILNNLALEDKSACVRASAINATGHRCK 120 (280)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccc
Confidence 23466777655 455555555567777665543
No 62
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=26.21 E-value=1.1e+02 Score=22.70 Aligned_cols=27 Identities=11% Similarity=0.054 Sum_probs=22.1
Q ss_pred HHHHHHhcCCccHhHHHHHHHHHHHHH
Q 000688 713 SDFFVSVGLSENLSVAIFVMDSLRQLA 739 (1350)
Q Consensus 713 ~~~f~~v~~~~n~~v~~~AidsLrqLs 739 (1350)
-+++.+..++++..||..|+..|.+++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 456777888999999999999998876
No 63
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=25.24 E-value=1.9e+03 Score=29.98 Aligned_cols=127 Identities=15% Similarity=0.262 Sum_probs=95.7
Q ss_pred Hhhh-cCCChHHHHHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhHhhhhcccCCCCCCCCCCCCCCCCCCcccccH
Q 000688 923 LSKL-TSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWD 1001 (1350)
Q Consensus 923 L~~l-~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 1001 (1350)
+.++ .+|.+.|||-+||..+=.++...|+.++.+ ...+|--+.+.+++
T Consensus 574 l~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~e-----L~~~L~il~eRl~n-------------------------- 622 (1233)
T KOG1824|consen 574 LQRLKATDSDQEVKERAISCMGQIIANFGDFLGNE-----LPRTLPILLERLGN-------------------------- 622 (1233)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhh-----hHHHHHHHHHHHhc--------------------------
Confidence 4445 478999999999999999999999665542 22233333344433
Q ss_pred HHhHHHHHHHHHHHHHHHHH-hHHhhHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 000688 1002 SETAAIGAECLVDIFICFFD-VVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGSRLSQDEWREILLALKETT 1080 (1350)
Q Consensus 1002 ~eT~~~al~~l~~lf~~yf~-~l~~~l~~~L~lL~~~i~~~~~~la~ig~~~l~~Ll~~~~~~f~~~~W~~i~~~~~~l~ 1080 (1350)
.-|+.-|.+.++.++..=.+ ++.+.+..++..+..+.+..+..+.-.....+..|+..-+..++.+.-+.++.-+-.+.
T Consensus 623 EiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Li 702 (1233)
T KOG1824|consen 623 EITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLI 702 (1233)
T ss_pred hhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhh
Confidence 25777788888888776544 35677889999999999999999999999999999999999999888887776655443
No 64
>PLN03205 ATR interacting protein; Provisional
Probab=25.15 E-value=2e+02 Score=34.53 Aligned_cols=85 Identities=18% Similarity=0.277 Sum_probs=53.1
Q ss_pred ccCChHHHHHHHHHHHHhchhhhcCCCCCCcchHHHHHHHHhhcccccccchhhhHHHHHHHHHHhcCCc-cHhHHHHHH
Q 000688 654 QRLNSEAIVAFVKALCKVSISELQSPTDPRVFSLTKLVEIAHYNMNRIRLVWSRMWNVLSDFFVSVGLSE-NLSVAIFVM 732 (1350)
Q Consensus 654 ~~L~~eai~~fv~AL~~vS~eel~~~~~pr~F~L~kLveva~~Nm~Ri~~~W~~iW~~l~~~f~~v~~~~-n~~v~~~Ai 732 (1350)
...+-+++.+-+--||.+-...+-+ -..-.|..+.+=..-|..|+.-.|.--|-.+-+..++++... ...|+..|+
T Consensus 317 G~V~lqtLlEaLLdLC~v~n~a~V~---RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAv 393 (652)
T PLN03205 317 GFVNLKSLVEPLLDLCKAETAVLVH---RSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEAL 393 (652)
T ss_pred CeeeHHHHHHHHHHHHhcCchhhhH---HHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehh
Confidence 4444444444444455554333321 112345556666677889999999999999999988876543 345788887
Q ss_pred HHHHHHHHH
Q 000688 733 DSLRQLAMK 741 (1350)
Q Consensus 733 dsLrqLs~k 741 (1350)
....-+.|+
T Consensus 394 SIMnVIlms 402 (652)
T PLN03205 394 SIMNIIVMS 402 (652)
T ss_pred hhhHHhhhc
Confidence 666655555
No 65
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=24.18 E-value=6.4e+02 Score=29.77 Aligned_cols=77 Identities=22% Similarity=0.240 Sum_probs=55.0
Q ss_pred HHhHHHHHHHHHHHHHHHH--HhHHhhHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHhhCCCC-CHHHHHHHHHHHHH
Q 000688 1002 SETAAIGAECLVDIFICFF--DVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGSRL-SQDEWREILLALKE 1078 (1350)
Q Consensus 1002 ~eT~~~al~~l~~lf~~yf--~~l~~~l~~~L~lL~~~i~~~~~~la~ig~~~l~~Ll~~~~~~f-~~~~W~~i~~~~~~ 1078 (1350)
..|+..||.++++++.+++ +.+..-...+++.+..|++.+...=...+..++.=|.++.|..- .++.++.+...+.+
T Consensus 57 ~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~ 136 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKR 136 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHH
Confidence 4899999999999998865 34555577889999999999886666677777777777755333 24445554444443
No 66
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=23.56 E-value=3.6e+02 Score=34.22 Aligned_cols=93 Identities=12% Similarity=0.085 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHHHhHhhhhcccCCCCCCCCCCCCCCCCCCcccccHHHhHHHHH
Q 000688 931 RSTIRKSSLEVLFNILKDHGH-LFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGA 1009 (1350)
Q Consensus 931 R~eVR~~AlqtLF~iL~~~G~-~f~~~~W~~i~~~VLfPi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~eT~~~al 1009 (1350)
..+...-|+|++-+++.+||. .++. .+.++..++|.++..... .|....+.
T Consensus 580 n~~lk~~A~q~~vDl~~~hg~~g~~k--~ds~l~~Il~~~l~~~e~--------------------------~E~q~i~a 631 (885)
T COG5218 580 NMELKSMAFQMCVDLVLSHGDEGEGK--LDSLLGDILRHILQGLET--------------------------KERQDIIA 631 (885)
T ss_pred chhHHHHHHHHHHHHHHHhcccccch--HHHHHHHHHHHHHhccCc--------------------------hhHHHHhh
Confidence 467889999999999999993 2332 556778888777766532 36677889
Q ss_pred HHHHHHHHHHH--HhHHhhHHHHHHHHHHhhccCCcchhHHHHHHH
Q 000688 1010 ECLVDIFICFF--DVVRSQLPGVVSILTGFIRSPIQGPASTGVAAL 1053 (1350)
Q Consensus 1010 ~~l~~lf~~yf--~~l~~~l~~~L~lL~~~i~~~~~~la~ig~~~l 1053 (1350)
.|+++|+..+- |.+. +.-+.--+-+-+|..|+.+.....-||
T Consensus 632 egl~Kl~l~~~~~Ddl~--~~~l~~~yf~p~~~~n~aL~Q~~~~~f 675 (885)
T COG5218 632 EGLSKLALSHRMPDDLR--SRFLAFAYFRPYCTQNDALKQYCSILF 675 (885)
T ss_pred hHHHHHHHHHhCchHHH--HhHHHHHHhCcccCchHHHHHHHhhhe
Confidence 99999987642 2221 111111133345666666655554444
No 67
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=23.11 E-value=99 Score=25.96 Aligned_cols=52 Identities=15% Similarity=0.118 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHhhccCCcchhHHHHHHHHHH
Q 000688 1005 AAIGAECLVDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHL 1056 (1350)
Q Consensus 1005 ~~~al~~l~~lf~~yf~~l~~~l~~~L~lL~~~i~~~~~~la~ig~~~l~~L 1056 (1350)
...|+..++.+-....+.+.+..++++..|..++..+++.+...++.+|.+|
T Consensus 4 R~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 4 RRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 3445555655444555667778899999999999999999988888887543
No 68
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.08 E-value=9.9e+02 Score=31.72 Aligned_cols=139 Identities=14% Similarity=0.158 Sum_probs=94.1
Q ss_pred HHHHHHhhhcCCC-hHHHHHHHHHHHHHHHHHcCCCCChhhHHHHH---HHHHHHhHhhhhcccCCCCCCCCCCCCCCCC
Q 000688 918 PLLTGLSKLTSDS-RSTIRKSSLEVLFNILKDHGHLFPRQFWMGVY---SHVIFPIFNGVCDKKDMPDKDEPDSPTSHSP 993 (1350)
Q Consensus 918 pLL~~L~~l~~d~-R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~---~~VLfPi~~~l~~~~~~~~~~~~~~~~~~~~ 993 (1350)
.++.++.++..|+ +.-||-.|.+||=-.++.. .|+++...-.+ ...+|.++.....
T Consensus 526 l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~--nF~~dsFlp~lenlf~~lfkll~~~~e------------------ 585 (978)
T KOG1993|consen 526 LLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDW--NFSEDSFLPYLENLFVLLFKLLKAVEE------------------ 585 (978)
T ss_pred HHHHHHHHhcCccccceeehHHHHHHHHhhhhc--cCChhhhhhhHHHHHHHHHHHHHHHhh------------------
Confidence 4566777888887 8999999999998888754 45444433333 2234445544422
Q ss_pred CCcccccHHHhHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHh--hccCCcchhHHHHHHHHHHHHhhCCCCCHHHHHH
Q 000688 994 LSEGSTWDSETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGF--IRSPIQGPASTGVAALLHLAGELGSRLSQDEWRE 1071 (1350)
Q Consensus 994 ~~~~~~W~~eT~~~al~~l~~lf~~yf~~l~~~l~~~L~lL~~~--i~~~~~~la~ig~~~l~~Ll~~~~~~f~~~~W~~ 1071 (1350)
-+|....|..++.+..+-=..+.++...++.+|... ...+..-++-.-...+++|+...|.+= .+.|.-
T Consensus 586 --------~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS-~~~~~f 656 (978)
T KOG1993|consen 586 --------CDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQS-FEFYPF 656 (978)
T ss_pred --------hhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCC-ccchHH
Confidence 378889999999998887777777777777777655 444555566666778899988877654 667877
Q ss_pred HHHHHHHHHhhchh
Q 000688 1072 ILLALKETTASTLP 1085 (1350)
Q Consensus 1072 i~~~~~~l~~~t~~ 1085 (1350)
.+-.++-..+..-|
T Consensus 657 L~pVIel~~D~~sP 670 (978)
T KOG1993|consen 657 LYPVIELSTDPSSP 670 (978)
T ss_pred HHHHHHHhcCCCCC
Confidence 76666644443333
No 69
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=23.04 E-value=8.5e+02 Score=25.20 Aligned_cols=109 Identities=14% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcccccccchhhhHHHHHHHHHHhcCCccHhHHHHHHHHHHHHHHHhcchhhhhhhhhh-----hhhhhh-
Q 000688 687 LTKLVEIAHYNMNRIRLVWSRMWNVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQ-----NEFLRP- 760 (1350)
Q Consensus 687 L~kLveva~~Nm~Ri~~~W~~iW~~l~~~f~~v~~~~n~~v~~~AidsLrqLs~kfLe~eEL~~f~fQ-----~~fL~P- 760 (1350)
++-+.||| +.|+..-..-=+.+...--++..++|..+..+|+..|.-++ +=.+..|+ ++|+..
T Consensus 19 w~~ileic----D~In~~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~v-------kNCG~~fh~eiask~Fl~e~ 87 (141)
T cd03565 19 WGLNMEIC----DIINETEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCV-------KNCGHRFHVLVAKKDFIKDV 87 (141)
T ss_pred HHHHHHHH----HHHhCCCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH-------HHccHHHHHHHHHHHhhhHH
Q ss_pred HHHHH--hcCCcHHHHHHHHHHHHHHHHhccccccCChHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 000688 761 FVIIM--QKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIVLLAFETMEK 824 (1350)
Q Consensus 761 f~~im--~~~~~~eIre~iL~cl~~~l~~~~~~I~SGWk~IF~il~~aa~~~~~~iV~~aF~~l~~ 824 (1350)
+..++ ..+...+|++.|++.|. +|..-| ..+.+-..+..+|+.++.
T Consensus 88 L~~~i~~~~~~~~~Vk~kil~li~------------~W~~~f------~~~~~l~~i~~~y~~L~~ 135 (141)
T cd03565 88 LVKLINPKNNPPTIVQEKVLALIQ------------AWADAF------RGSPDLTGVVEVYEELKK 135 (141)
T ss_pred HHHHHcccCCCcHHHHHHHHHHHH------------HHHHHh------CCCccchHHHHHHHHHHH
No 70
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=22.99 E-value=3.5e+02 Score=27.66 Aligned_cols=58 Identities=21% Similarity=0.305 Sum_probs=35.7
Q ss_pred CccHhHHHHHHHHHHHHHHHhcc--hhhhhhhhhhhhhhhhHHHHHhcCCc-HHHHHHHHHHHHH
Q 000688 722 SENLSVAIFVMDSLRQLAMKFLE--REELANYNFQNEFLRPFVIIMQKSGS-AEIRELIIRCISQ 783 (1350)
Q Consensus 722 ~~n~~v~~~AidsLrqLs~kfLe--~eEL~~f~fQ~~fL~Pf~~im~~~~~-~eIre~iL~cl~~ 783 (1350)
|+|..+..+|+..|-.+..---. ..|++. +.|+..+..+...... ..|++.+++.+.+
T Consensus 48 ~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s----~~fl~~L~~l~~~~~~~~~Vk~kil~li~~ 108 (133)
T smart00288 48 NKNPHVALLALTLLDACVKNCGSKFHLEVAS----KEFLNELVKLIKPKYPLPLVKKRILELIQE 108 (133)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHh----HHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Confidence 68888888888776655422111 122222 4567777776665544 3488888877763
No 71
>KOG1766 consensus Enhancer of rudimentary [General function prediction only]
Probab=22.72 E-value=1.6e+02 Score=28.15 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=25.0
Q ss_pred CCccccc-HHHhHHHHHHHHHHHHHHHHHhHH
Q 000688 994 LSEGSTW-DSETAAIGAECLVDIFICFFDVVR 1024 (1350)
Q Consensus 994 ~~~~~~W-~~eT~~~al~~l~~lf~~yf~~l~ 1024 (1350)
..+...| +.|+...|+.|+|++|..|+...+
T Consensus 13 r~esRT~~DYesv~e~megiCk~yEe~Lkk~n 44 (104)
T KOG1766|consen 13 RPESRTWGDYESVTECMEGICKMYEEHLKKKN 44 (104)
T ss_pred CcccccccchHhHHHHHHHHHHHHHHHHHhcC
Confidence 4445567 478999999999999999998764
No 72
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=21.98 E-value=1e+03 Score=25.72 Aligned_cols=82 Identities=21% Similarity=0.216 Sum_probs=52.0
Q ss_pred HHHHhcCCccHhHHHHHHHHHHHHHHHhcchhhhhhhhhhhhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccC
Q 000688 715 FFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKS 794 (1350)
Q Consensus 715 ~f~~v~~~~n~~v~~~AidsLrqLs~kfLe~eEL~~f~fQ~~fL~Pf~~im~~~~~~eIre~iL~cl~~~l~~~~~~I~S 794 (1350)
++.+.+.+++..+|..|++.+..+...-|- |- ... -|...-+..+++..||....+.+..+-+.+.+-+.+
T Consensus 12 ~Il~~~~~~~~~vr~~Al~~l~~il~qGLv-----nP---~~c-vp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 12 NILELCLSSDDSVRLAALQVLELILRQGLV-----NP---KQC-VPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHhcCCC-----Ch---HHH-HhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH
Confidence 345577889999999999888765522221 00 011 233334556789999999999999988887665433
Q ss_pred ----ChHHHHHHHHH
Q 000688 795 ----GWKSVFSIFTA 805 (1350)
Q Consensus 795 ----GWk~IF~il~~ 805 (1350)
|=+..|..-..
T Consensus 83 ~~~~gi~~af~~~~~ 97 (187)
T PF12830_consen 83 RYSEGIRLAFDYQRR 97 (187)
T ss_pred HHHHHHHHHHHHHHH
Confidence 44444444443
Done!