Query 000688
Match_columns 1350
No_of_seqs 376 out of 1103
Neff 7.1
Searched_HMMs 29240
Date Tue Mar 26 16:19:40 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000688.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_460-463//hhsearch_pdb/000688hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ltl_A Brefeldin A-inhibited g 1.0 1 1 493.7 20.3 198 183-380 10-209 (211)
2 1r8s_E ARNO; protein transport 1.0 1 1 489.2 21.2 195 186-380 7-201 (203)
3 1ku1_A ARF guanine-nucleotide 1.0 1 1 480.5 18.8 196 184-381 16-228 (230)
4 1xsz_A Guanine nucleotide exch 1.0 1 1 460.1 20.3 191 192-382 8-203 (356)
5 2r09_A Cytohesin-3; autoinhibi 1.0 1 1 457.4 22.5 192 189-380 12-203 (347)
6 1ibr_B P95, importin beta-1 su 1.0 1 1 45.6 17.1 306 704-1064 125-443 (462)
7 2bpt_A Importin beta-1 subunit 1.0 1 1 45.3 36.7 290 710-1064 368-674 (861)
8 4fdd_A Transportin-1; heat rep 1.0 1 1 43.8 36.1 298 711-1064 359-664 (852)
9 1u6g_C TIP120 protein, CAND1; 1.0 1 1 43.2 34.3 105 919-1060 857-962 (1230)
10 2bpt_A Importin beta-1 subunit 1.0 1 1 41.5 28.5 57 1008-1064 659-717 (861)
No 1
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} SCOP: a.118.3.0 PDB: 3l8n_A 3swv_A
Probab=1.00 E-value=1 Score=493.71 Aligned_cols=198 Identities=52% Similarity=0.913 Sum_probs=193.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 78999999399999999983069513699999649999997979998731999994678742015631679999999851
Q 000688 183 ATLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDS 262 (1350)
Q Consensus 183 ~~~e~~k~~K~~~~~~~~~Fn~~p~~gi~~l~~~~~i~~~p~~ia~fl~~~~~l~k~~igeylg~~~~~~~~vl~~~~~~ 262 (1350)
.+||+.|++|..+++|+.+||.|||+||+||+++|+++++|++||+||+.+++|||++||+|||+++++|.+||++|++.
T Consensus 10 ~~~~~~k~rK~~~~~g~~~FN~~PkkGi~~L~~~g~i~~~p~~iA~FL~~~~~L~k~~igeyLg~~~~fn~~vL~~yv~~ 89 (211)
T 3ltl_A 10 TQFEVLKQQKEIIEQGIDLFNKKPKRGIQYLQEQGMLGTTPEDIAQFLHQEERLDSTQVGEFLGDNDKFNKEVMYAYVDQ 89 (211)
T ss_dssp -----CCSHHHHHHHHHHHHHHCHHHHHHHHHHTTSSCSSHHHHHHHHHHCTTSCHHHHHHHHTCCSHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 07899999889999999998329999999999869989999999999984767549999998704662689999999985
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 799998816999998613878985699999999999999561999--999910899999999763232221004799998
Q 000688 263 FNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPS--SFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTK 340 (1350)
Q Consensus 263 ~df~~~~~~~aLR~fl~~f~LpgE~q~idri~e~Fa~~y~~~n~~--~f~~~d~~y~l~~siimLntdlhn~~~k~kmt~ 340 (1350)
|||+|+++|+|||.||.+||||||+|+||||||+||+|||+|||+ +|.|+|+||+|+||+||||||+|||++|+|||+
T Consensus 90 fdF~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~~Np~~~~f~s~D~~~iLaySiImLNTDlHn~~vk~kMt~ 169 (211)
T 3ltl_A 90 HDFSGKDFVSALRMFLEGFRLPGEAQKIDRLMEKFAARYLECNQGQTLFASADTAYVLAYSIIMLTTDLHSPQVKNKMTK 169 (211)
T ss_dssp SCCCSSCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHTCTTCCSCSSHHHHHHHHHHHHHHHHHHTCTTCCSCCCH
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 59889979999999997371798426999999999999998588877747888999999999998564148645689899
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 8798831478899999788999999997617345467888
Q 000688 341 ADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSS 380 (1350)
Q Consensus 341 ~~Fi~n~~g~~~~~d~~~~~L~~iY~~I~~~ei~~~~~~~ 380 (1350)
++||+|+||+|+|+|||+++|++||++|+++||+|+++..
T Consensus 170 ~~Fi~n~rg~n~g~d~p~e~L~~iYd~I~~~ei~l~~~~~ 209 (211)
T 3ltl_A 170 EQYIKMNRGINDSKDLPEEYLSAIYNEIAGKKISMKETKE 209 (211)
T ss_dssp HHHHHHTCSSCSSSSCCHHHHHHHHHHHHHSCCCCC----
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 9999986543678999999999999999848762789988
No 2
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Probab=1.00 E-value=1 Score=489.16 Aligned_cols=195 Identities=52% Similarity=0.876 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCC
Q ss_conf 99999399999999983069513699999649999997979998731999994678742015631679999999851799
Q 000688 186 EQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNF 265 (1350)
Q Consensus 186 e~~k~~K~~~~~~~~~Fn~~p~~gi~~l~~~~~i~~~p~~ia~fl~~~~~l~k~~igeylg~~~~~~~~vl~~~~~~~df 265 (1350)
++.+++|+.+..|+.+||.+||+||+||+++|+++++|++||+||+.++||||++||+|||+++++|.+||++|++.|||
T Consensus 7 ~~~~~~k~~~~~g~~~FN~~PkkGi~~L~~~~~l~~~p~~iA~fL~~~~~l~k~~igeyLg~~~~~n~~vl~~y~~~fdF 86 (203)
T 1r8s_E 7 SKTLQRNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLHAFVDLHEF 86 (203)
T ss_dssp ------CHHHHHHHHHHHHCHHHHHHHHHHTTSSCSSHHHHHHHHHHCTTCCHHHHHHHHTCCSHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 34888889999999998129999999999879999999999999987768589999999851443799999999996497
Q ss_pred CCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 99881699999861387898569999999999999956199999991089999999976323222100479999887988
Q 000688 266 KGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIR 345 (1350)
Q Consensus 266 ~~~~~~~aLR~fl~~f~LpgE~q~idri~e~Fa~~y~~~n~~~f~~~d~~y~l~~siimLntdlhn~~~k~kmt~~~Fi~ 345 (1350)
+|+++|+|||.||.+||||||+|+|||+||+||+|||+|||+.|.|+|+||+|+||+||||||+|||++|+|||+++||+
T Consensus 87 ~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~~Np~~f~s~D~~~vLaySiImLNTDlHn~~vk~kMt~~~Fi~ 166 (203)
T 1r8s_E 87 TDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSYSVIMLNTDLHNPNVRDKMGLERFVA 166 (203)
T ss_dssp TTCCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHHSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 89968999999997261787168999999999999998497656781167999989988651004742223467999999
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 31478899999788999999997617345467888
Q 000688 346 NNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSS 380 (1350)
Q Consensus 346 n~~g~~~~~d~~~~~L~~iY~~I~~~ei~~~~~~~ 380 (1350)
|+||+|+|+|+|+++|++||++|+.+||+|++|+.
T Consensus 167 n~rgin~g~d~p~e~L~~iYd~I~~~ei~~~~d~~ 201 (203)
T 1r8s_E 167 MNRGINEGGDLPEELLRNLYDSIRNEPFKIPEDDG 201 (203)
T ss_dssp HTTTTBTTBCCCHHHHHHHHHHHHHSCCCCCCC--
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 86266578999999999999999848788965768
No 3
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B*
Probab=1.00 E-value=1 Score=480.48 Aligned_cols=196 Identities=36% Similarity=0.617 Sum_probs=185.7
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC-CHHHHHHHHHCC-CCCCHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 89999993999999999830695136999996499999-979799987319-9999467874201563167999999985
Q 000688 184 TLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVGD-SPEEVASFLKNT-TGLNETMIGDYLGEREEFSLKVMHAYVD 261 (1350)
Q Consensus 184 ~~e~~k~~K~~~~~~~~~Fn~~p~~gi~~l~~~~~i~~-~p~~ia~fl~~~-~~l~k~~igeylg~~~~~~~~vl~~~~~ 261 (1350)
+++++|++|..+.+|+.+||.+||+||+||+++|++++ +|++||+||+.+ ++|||++||||||+++ +.+||++|++
T Consensus 16 ~~~~~r~~K~~~~~~~~~FN~~PkkGI~~L~~~g~l~~~~~~~iA~fL~~~~~~L~k~~iGeyLg~~~--n~~vL~~yv~ 93 (230)
T 1ku1_A 16 PRGSHMDRKTEFIECTNAFNEKPKKGIPMLIEKGFIASDSDKDIAEFLFNNNNRMNKKTIGLLLCHPD--KVSLLNEYIR 93 (230)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHCHHHHHHHHHHTTSSSCSSHHHHHHHHHHTTTTSCHHHHHHHHTCGG--GHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCC--HHHHHHHHHH
T ss_conf 99999999999999999995499999999998898389998999999997276569999999980821--7999999985
Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCC---------------CCCCCCCHHHHHHHHHHHHH
Q ss_conf 179999881699999861387898569999999999999956199---------------99999108999999997632
Q 000688 262 SFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNP---------------SSFTSADTAYVLAYSVIMLN 326 (1350)
Q Consensus 262 ~~df~~~~~~~aLR~fl~~f~LpgE~q~idri~e~Fa~~y~~~n~---------------~~f~~~d~~y~l~~siimLn 326 (1350)
.|||+|+++|+|||.||.+||||||+|+||||||+||+|||+||| +.|.|+|+||+|+||+||||
T Consensus 94 ~fdF~g~~ld~ALR~fL~~f~LPGEaQ~IdRile~Fa~rY~~~N~~~p~~~~~~~~~~~~~~f~s~D~vyvLaySiImLN 173 (230)
T 1ku1_A 94 LFDFSGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCENQDYDPSKISDNAEDDISTVQPDADSVFILSYSIIMLN 173 (230)
T ss_dssp TSCCTTCCHHHHHHHHTTTCCCCSSHHHHHHHHHHHHHHHHHTSCCCGGGCCSCCTTCGGGCCCCHHHHHHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 42679997999999999808588519999999999999999818777532101001122345577028999999999980
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 3222100479999887988314788999997889999999976173454678888
Q 000688 327 TDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSSA 381 (1350)
Q Consensus 327 tdlhn~~~k~kmt~~~Fi~n~~g~~~~~d~~~~~L~~iY~~I~~~ei~~~~~~~~ 381 (1350)
||+|||++|+|||+++||+|+||+|+|+|||+++|++||++|+.+||+|++|+.+
T Consensus 174 TDlHnp~vk~kMT~~~FikN~rg~n~g~d~p~e~L~~iY~~I~~~ei~~~ee~~g 228 (230)
T 1ku1_A 174 TDLHNPQVKEHMSFEDYSGNLKGCCNHKDFPFWYLDRVYCSIRDKEIVMPEEHHG 228 (230)
T ss_dssp HHHTCTTCSSCCCHHHHHHHTTTCBTTBCCCHHHHHHHHHHHHHSCCCCC-----
T ss_pred HHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 1302643467777999999864656778888999999999998483468866779
No 4
>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B
Probab=1.00 E-value=1 Score=460.10 Aligned_cols=191 Identities=37% Similarity=0.623 Sum_probs=179.2
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHCCC--CCCCHHHHHHHHHC-CCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 999999999830695136999996499--99997979998731-999994678742015631679999999851799998
Q 000688 192 KIELQKGISLFNRKPSKGIEFLINSKK--VGDSPEEVASFLKN-TTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGM 268 (1350)
Q Consensus 192 K~~~~~~~~~Fn~~p~~gi~~l~~~~~--i~~~p~~ia~fl~~-~~~l~k~~igeylg~~~~~~~~vl~~~~~~~df~~~ 268 (1350)
|+.+.+|+.+||.+||+||+||++.+. ..++|++||+||+. +++|||++||||||+++++|.+||++|++.|||+|+
T Consensus 8 ~k~~~e~i~~FN~~PkkGI~~L~~~~~~~~~~~p~~IA~FL~~~~~~LdK~~IGeyLg~~~~~n~~VL~~yv~~fdF~g~ 87 (356)
T 1xsz_A 8 EKAQREIIEAFNAKPKNGINKIKEICEQYKISPNEEIAEFFHQQRKNLDLEAVGDYLSSPEAENQQVLKAFTSQMNFNGQ 87 (356)
T ss_dssp HHTHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTTTSCHHHHHHHHTCCSHHHHHHHHHHHHTSCCTTS
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999998159999999999860015899999999999845878899999999857845789999999996697999
Q ss_pred CCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--CCCCHHHHHHH
Q ss_conf 8169999986138789856999999999999995619999999108999999997632322210047--99998879883
Q 000688 269 DFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVK--DKMTKADFIRN 346 (1350)
Q Consensus 269 ~~~~aLR~fl~~f~LpgE~q~idri~e~Fa~~y~~~n~~~f~~~d~~y~l~~siimLntdlhn~~~k--~kmt~~~Fi~n 346 (1350)
++|+|||.||.+||||||+|+|||+||+||+|||+|||+.|.|+|+||+|+||+||||||+|||++| +|||+++||+|
T Consensus 88 ~ld~ALR~fL~~frLPGEaQ~IDRile~FA~rY~~~Np~~f~s~D~~yvLaySiImLNTDLHNpnvk~k~kMT~~dFikN 167 (356)
T 1xsz_A 88 SFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDVVSNADAAYLLAFQTIMLNTDLHNPSIPEKNKMTVDGLKRN 167 (356)
T ss_dssp CHHHHHHHHHHTSCBCSSHHHHHHHHHHHHHHHHHHCTTTSSSHHHHHHHHHHHHHHHHHHHCTTSCGGGSCCHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 89999999998284885088999999999999997399866874389999999998621003865554578989999998
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 147889999978899999999761734546788882
Q 000688 347 NRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSSAP 382 (1350)
Q Consensus 347 ~~g~~~~~d~~~~~L~~iY~~I~~~ei~~~~~~~~~ 382 (1350)
+||+|+|+|||+++|++||++|+.+||++...+..|
T Consensus 168 ~rgin~g~d~p~e~L~~iYd~I~~~ei~l~~~~~~p 203 (356)
T 1xsz_A 168 LRGGNNGGDFDAKFLEELYSEIKAKPFELNFVKTSP 203 (356)
T ss_dssp TTTTBTTBCCCHHHHHHHHHHHHHSCCCCCBCSSCS
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 544468788989999999999970877557755686
No 5
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=1.00 E-value=1 Score=457.44 Aligned_cols=192 Identities=51% Similarity=0.876 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 99399999999983069513699999649999997979998731999994678742015631679999999851799998
Q 000688 189 RAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGM 268 (1350)
Q Consensus 189 k~~K~~~~~~~~~Fn~~p~~gi~~l~~~~~i~~~p~~ia~fl~~~~~l~k~~igeylg~~~~~~~~vl~~~~~~~df~~~ 268 (1350)
+++|..+.+|+.+||.+|++||+||+++|+++++|++||+||+.+++|||++||||||+++++|.+||++|++.|||+|+
T Consensus 12 ~~~~~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~~~~ia~fl~~~~~l~k~~ig~~l~~~~~~~~~vl~~~~~~~~f~~~ 91 (347)
T 2r09_A 12 TQRNAQIAMGRKKFNMDPKKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDDFNIKVLQAFVELHEFADL 91 (347)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHTTSSCCSHHHHHHHHHHCTTCCHHHHHHHHHCCSHHHHHHHHHHHHTSCCTTC
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 88999999999998239999999999879999999999999985727578999998658970689999999995386899
Q ss_pred CCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHC
Q ss_conf 81699999861387898569999999999999956199999991089999999976323222100479999887988314
Q 000688 269 DFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNR 348 (1350)
Q Consensus 269 ~~~~aLR~fl~~f~LpgE~q~idri~e~Fa~~y~~~n~~~f~~~d~~y~l~~siimLntdlhn~~~k~kmt~~~Fi~n~~ 348 (1350)
+||+|||.||.+||||||+|+||||||+||+|||+|||++|.|+|+||+|+||+||||||+|||++|+|||+++||+|+|
T Consensus 92 ~~~~alR~~l~~f~lpgE~q~idril~~Fa~~y~~~np~~~~~~d~~~~l~~siimLntdlhn~~~k~kmt~~~fi~n~~ 171 (347)
T 2r09_A 92 NLVQALRQFLWSFRLPGEAQKIDRMMEAFASRYCLCNPGVFQSTDTCYVLSFAIIMLNTSLHNHNVRDKPTAERFITMNR 171 (347)
T ss_dssp CHHHHHHHHTTSCCCCSSHHHHHHHHHHHHHHHHHHSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHTT
T ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 79999999997286897267899999999999998598656785489999999999705640530124587999998751
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 78899999788999999997617345467888
Q 000688 349 GIDDGKDLPEEYLGVLYDQIVKNEIKMNADSS 380 (1350)
Q Consensus 349 g~~~~~d~~~~~L~~iY~~I~~~ei~~~~~~~ 380 (1350)
|+|+|+|+|+++|+.+|++|+.+||.+++++.
T Consensus 172 ~~~~~~~~p~e~L~~iY~~I~~~ei~~~~e~~ 203 (347)
T 2r09_A 172 GINEGGDLPEELLRNLYESIKNEPFKIPEDDG 203 (347)
T ss_dssp TTBTTBCCCHHHHHHHHHHHHHSCCCCTTCCS
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 12677778999999997743137654554455
No 6
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=1.00 E-value=1 Score=45.63 Aligned_cols=306 Identities=14% Similarity=0.165 Sum_probs=151.1
Q ss_pred CHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Q ss_conf 11136999999999704786--5769999999999999983144554212234433446999971289-48999999999
Q 000688 704 VWSRMWNVLSDFFVSVGLSE--NLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSG-SAEIRELIIRC 780 (1350)
Q Consensus 704 ~W~~iW~~l~~~f~~v~~~~--n~~va~~AidsLrqLs~kfLe~eEL~~f~FQ~~fL~pf~~im~~~~-~~eIre~iL~c 780 (1350)
.|+.+-.. +......+ +..++..|+..|+.++-++-. +.+. .+-..++..+...+.... +.+||...++|
T Consensus 125 ~w~~ll~~----L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~-~~~~--~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~ 197 (462)
T 1ibr_B 125 QWPELIPQ----LVANVTNPNSTEHMKESTLEAIGYICQDIDP-EQLQ--DKSNEILTAIIQGMRKEEPSNNVKLAATNA 197 (462)
T ss_dssp CCTTHHHH----HHHHHHCTTCCHHHHHHHHHHHHHHHHHSCG-GGTG--GGHHHHHHHHHHHHSTTCCCHHHHHHHHHH
T ss_pred CCHHHHHH----HHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC-HHHH--HHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 26999999----9998626788789999999999999981871-5347--679999999999867999989999999999
Q ss_pred HHHHHHHCCCCCCCCH---HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH-HHHHHHHHHHCCCC
Q ss_conf 9999981136656793---9999999773104137899999999999997115876535412099-99999999870888
Q 000688 781 ISQMVLSRVSNVKSGW---KSVFSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFT-DCVKCLLTFTNSRF 856 (1350)
Q Consensus 781 l~~li~~~~~~IkSGW---k~IF~il~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~-dlI~cL~~F~~~~~ 856 (1350)
+..++....++. ..| ..+..++.....+.++.+...+++++..+...+...+. ..+. .++..+...... .
T Consensus 198 l~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~----~~~~~~l~~~~~~~~~~-~ 271 (462)
T 1ibr_B 198 LLNSLEFTKANF-DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME----TYMGPALFAITIEAMKS-D 271 (462)
T ss_dssp HHHHTTTTHHHH-TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCT----TTTTTTHHHHHHHHHHC-S
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCC-C
T ss_conf 999999999843-23678989999999853799789999999999999999899999----88888999999999828-8
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHH-HHHHC---CCCH
Q ss_conf 9662188999999999981017753456898889999998999886667788-54220327999997-76421---7983
Q 000688 857 NSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSD-KDDNSSFWVPLLTG-LSKLT---SDSR 931 (1350)
Q Consensus 857 d~niSL~AI~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lW~pLL~~-L~~l~---~d~r 931 (1350)
+.++...|++++..++...........+. ..+ +......... -..+..-.+|.+.. +.+.- .+..
T Consensus 272 ~~~v~~~a~~~l~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~ 341 (462)
T 1ibr_B 272 IDEVALQGIEFWSNVCDEEMDLAIEASEA-AEQ---------GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDD 341 (462)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHCCT-TCS---------SSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCC---------CCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCC
T ss_conf 60999999999999999888788760100-003---------78863035999998766400799999874444444443
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHH
Q ss_conf 8888989999999999708999965699999997887685310025899999999999889997566518-986999999
Q 000688 932 STIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWD-SETAAIGAE 1010 (1350)
Q Consensus 932 ~eVR~~Al~tLF~iL~~~G~~f~~~~W~~i~~~VLfPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~-~eT~~~aL~ 1010 (1350)
..+|..|...|-.+....|. .++. .++|.+..... + ..|. .+....++.
T Consensus 342 ~~~r~~a~~~L~~l~~~~~~--------~~~~-~~~~~l~~~l~------------------~---~~~~~r~aal~~l~ 391 (462)
T 1ibr_B 342 WNPCKAAGVCLMLLATCCED--------DIVP-HVLPFIKEHIK------------------N---PDWRYRDAAVMAFG 391 (462)
T ss_dssp CSHHHHHHHHHHHHHHHTTT--------THHH-HHHHHHHHHTT------------------C---SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCH--------HHHH-HHHHHHHHHHC------------------C---CCHHHHHHHHHHHH
T ss_conf 32889999999999986358--------7899-99999999843------------------8---97589999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999998876986499999999872316886144999999999999618999
Q 000688 1011 CLVDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGSRL 1064 (1350)
Q Consensus 1011 ~l~~Lf~~yf~~l~~~l~~~L~lL~~~i~~~~~~ia~ig~~~l~~ll~~~~~~f 1064 (1350)
.+++-.. -+.+...+..++..+..++..++..+...++.++.++....++.+
T Consensus 392 ~l~~~~~--~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~ 443 (462)
T 1ibr_B 392 CILEGPE--PSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAA 443 (462)
T ss_dssp HTSSSSC--TTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGC
T ss_pred HHHCCCC--HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9864876--777898899999999999669978999999999999998620114
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=45.32 Aligned_cols=290 Identities=12% Similarity=0.091 Sum_probs=140.1
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999704786576999999999999998314455421223443344699997128948999999999999998113
Q 000688 710 NVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRV 789 (1350)
Q Consensus 710 ~~l~~~f~~v~~~~n~~va~~AidsLrqLs~kfLe~eEL~~f~FQ~~fL~pf~~im~~~~~~eIre~iL~cl~~li~~~~ 789 (1350)
..+.+++.....+++..++.-|+..|..++. ....+.+.. +-..++..+...+ ...+..||..++.++.++....+
T Consensus 368 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~-~~~~~~~~~--~l~~il~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~ 443 (861)
T 2bpt_A 368 EPVLEFVEQNITADNWRNREAAVMAFGSIMD-GPDKVQRTY--YVHQALPSILNLM-NDQSLQVKETTAWCIGRIADSVA 443 (861)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS-SSCHHHHHH--HHHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC-CCCHHHHHH--HHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999987579972699999999999985-998788899--8999999999882-89959999999999999998735
Q ss_pred CCC--CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCHHHHHHHHHHHHHCCCC-CCCCCHH
Q ss_conf 665--67939999999773104137899999999999997115---87653541209999999999870888-9662188
Q 000688 790 SNV--KSGWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYF---PHITETESTTFTDCVKCLLTFTNSRF-NSDVCLN 863 (1350)
Q Consensus 790 ~~I--kSGWk~IF~il~~aa~~~~~~iV~~aF~~l~~I~~d~l---~~l~~~~~~~f~dlI~cL~~F~~~~~-d~niSL~ 863 (1350)
..+ ..-...++..+-....+. +.+...+...+..++...- .... ...+..++..|........ +.++-..
T Consensus 444 ~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l---~~~~~~il~~L~~~l~~~d~~~~vr~~ 519 (861)
T 2bpt_A 444 ESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPI---YNFYPALVDGLIGAANRIDNEFNARAS 519 (861)
T ss_dssp GGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGG---GGGHHHHHHHHHHHHTCSCCGGGHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 40487888999999999976447-28999999999999986231354246---899999999999998575861589999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-------C----CCHH
Q ss_conf 9999999999810177534568988899999989998866677885422032799999776421-------7----9838
Q 000688 864 AIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLT-------S----DSRS 932 (1350)
Q Consensus 864 AI~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~L~~l~-------~----d~r~ 932 (1350)
++..+..++...... .......++-+++..|.+.. . +...
T Consensus 520 a~~al~~l~~~~~~~-----------------------------~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~ 570 (861)
T 2bpt_A 520 AFSALTTMVEYATDT-----------------------------VAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQ 570 (861)
T ss_dssp HHHHHHHHHHHCCGG-----------------------------GHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCHH-----------------------------HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 999999999976265-----------------------------699999999999999998875320138855677799
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 88898999999999970899996569999999788768531002589999999999988999756651898699999999
Q 000688 933 TIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGAECL 1012 (1350)
Q Consensus 933 eVR~~Al~tLF~iL~~~G~~f~~~~W~~i~~~VLfPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~eT~~~aL~~l 1012 (1350)
++|..++++|-.++...|..+.+ +-.. ++|.+-.+.... +.+ . ..+....++..+
T Consensus 571 ~~~~~~~~~l~~l~~~~~~~~~~-~~~~-----l~~~l~~~l~~~----------------~~~-~--v~~~~~~~l~~l 625 (861)
T 2bpt_A 571 ELQSNILTVLAAVIRKSPSSVEP-VADM-----LMGLFFRLLEKK----------------DSA-F--IEDDVFYAISAL 625 (861)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTGG-GHHH-----HHHHHHHHHHST----------------TGG-G--THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHH-----HHHHHHHHHCCC----------------CCC-C--HHHHHHHHHHHH
T ss_conf 99999999999999985563478-9999-----999999997467----------------887-5--799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999998876986499999999872316886144999999999999618999
Q 000688 1013 VDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGSRL 1064 (1350)
Q Consensus 1013 ~~Lf~~yf~~l~~~l~~~L~lL~~~i~~~~~~ia~ig~~~l~~ll~~~~~~f 1064 (1350)
+..+. ..+.+.++.++..+..++..++..+...++.++..+....|..|
T Consensus 626 ~~~~~---~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~ 674 (861)
T 2bpt_A 626 AASLG---KGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDF 674 (861)
T ss_dssp HHHHG---GGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGG
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHC
T ss_conf 99976---60999999999999988655667899999999999998745403
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=43.81 Aligned_cols=298 Identities=10% Similarity=0.087 Sum_probs=133.8
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999997047865769999999999999983144554212234433446999971289489999999999999981136
Q 000688 711 VLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVS 790 (1350)
Q Consensus 711 ~l~~~f~~v~~~~n~~va~~AidsLrqLs~kfLe~eEL~~f~FQ~~fL~pf~~im~~~~~~eIre~iL~cl~~li~~~~~ 790 (1350)
.+.+++...-.+++..++.-|+..|..++...- +.+. .+-..++..+...+ ...+..||.....++.++-...+.
T Consensus 359 ~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~--~~~~--~~l~~~l~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~ 433 (852)
T 4fdd_A 359 HILPLLKELLFHHEWVVKESGILVLGAIAEGCM--QGMI--PYLPELIPHLIQCL-SDKKALVRSITCWTLSRYAHWVVS 433 (852)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTH--HHHG--GGHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCH--HHHH--HHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999998559988999999999999986356--8899--87999999999871-799889999999999999988611
Q ss_pred C-CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 6-567939999999773104137899999999999997115876535412099999999998708889662188999999
Q 000688 791 N-VKSGWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFLR 869 (1350)
Q Consensus 791 ~-IkSGWk~IF~il~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~dlI~cL~~F~~~~~d~niSL~AI~~l~ 869 (1350)
. ...--..++..+-....+.++.+-..+...+..++...-..+ ...+..++..|....+... ......+++.++
T Consensus 434 ~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l----~~~l~~ll~~L~~~l~~~~-~~~~~~~~~ai~ 508 (852)
T 4fdd_A 434 QPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTEL----VPYLAYILDTLVFAFSKYQ-HKNLLILYDAIG 508 (852)
T ss_dssp SCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGG----GGGHHHHHHHHHHHHHHCC-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHH
T ss_conf 04789999999999999858988899999999999999736766----7679999999999998837-479999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 99998101775345689888999999899988666778854220327999997764217983888898999999999970
Q 000688 870 FCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDH 949 (1350)
Q Consensus 870 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~L~~l~~d~r~eVR~~Al~tLF~iL~~~ 949 (1350)
.+++.+... ..+..+....+|.|...-....|..+++| .+++++-.+....
T Consensus 509 ~l~~~~~~~----------------------------~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~ 559 (852)
T 4fdd_A 509 TLADSVGHH----------------------------LNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATAL 559 (852)
T ss_dssp HHHHHHGGG----------------------------GCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHH----------------------------HCCHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHHHHH
T ss_conf 999974243----------------------------13678999988999999873330469999-9999999999997
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH-HHC----CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999656999999978876853-100----2589999999999988999756651898699999999999999887698
Q 000688 950 GHLFPRQFWMGVYSHVIFPIFNG-VCD----KKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGAECLVDIFICFFDVVR 1024 (1350)
Q Consensus 950 G~~f~~~~W~~i~~~VLfPil~~-l~~----~~~~~~~~~~~~~~~~~~~~~~~~W~~eT~~~aL~~l~~Lf~~yf~~l~ 1024 (1350)
|..|.+ +-..++..++ .++.. +.. ...... . ..+. .+....++..+..+....-..+.
T Consensus 560 g~~~~~-~~~~i~~~~~-~~l~~~l~~~~~~~~~~~~---------~--~~~d----~~~~~~~l~~l~~l~~~l~~~~~ 622 (852)
T 4fdd_A 560 QSGFLP-YCEPVYQRCV-NLVQKTLAQAMLNNAQPDQ---------Y--EAPD----KDFMIVALDLLSGLAEGLGGNIE 622 (852)
T ss_dssp GGGGHH-HHHHHHHHHH-HHHHHHHHHHHHHHHCTTT---------S--CCCC----THHHHHHHHHHHHHHHHHGGGGH
T ss_pred HHHHHH-HHHHHHHHHH-HHHHHHHHHHHHHHCCCCC---------C--CCCC----CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 486798-8999999999-9999999999875338866---------6--8876----11999999999789998747699
Q ss_pred HHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 649--9999999872316886144999999999999618999
Q 000688 1025 SQL--PGVVSILTGFIRSPIQGPASTGVAALLHLAGELGSRL 1064 (1350)
Q Consensus 1025 ~~l--~~~L~lL~~~i~~~~~~ia~ig~~~l~~ll~~~~~~f 1064 (1350)
+.+ ..++.++..|+..++..+...+..++..+....+..|
T Consensus 623 ~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~ 664 (852)
T 4fdd_A 623 QLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHV 664 (852)
T ss_dssp HHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGT
T ss_pred HHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 883677189999998389984499999999999999816888
No 9
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=43.22 Aligned_cols=105 Identities=8% Similarity=-0.001 Sum_probs=59.7
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99977642179838888989999999999708999965699999997887685310025899999999999889997566
Q 000688 919 LLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGS 998 (1350)
Q Consensus 919 LL~~L~~l~~d~r~eVR~~Al~tLF~iL~~~G~~f~~~~W~~i~~~VLfPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 998 (1350)
+...+.....|+..+||..|...|=.+...+ +. .++-.++..+.. .. +
T Consensus 857 l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~~--------~~----~~lp~ll~~l~~------------------~~--~ 904 (1230)
T 1u6g_C 857 LKSVILEAFSSPSEEVKSAASYALGSISVGN--------LP----EYLPFVLQEITS------------------QP--K 904 (1230)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHT--------HH----HHHHHHHHHHHS------------------CG--G
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC--------HH----HHHHHHHHHHHC------------------CC--H
T ss_conf 8999999847997789999999968775269--------99----889999998726------------------60--3
Q ss_pred CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 518986999999999999998-87698649999999987231688614499999999999961
Q 000688 999 TWDSETAAIGAECLVDIFICF-FDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGEL 1060 (1350)
Q Consensus 999 ~W~~eT~~~aL~~l~~Lf~~y-f~~l~~~l~~~L~lL~~~i~~~~~~ia~ig~~~l~~ll~~~ 1060 (1350)
. .++..++++.++. +- -+.+.+....++..|.+.+....+++......|+..|+...
T Consensus 905 ~--~~~~l~al~e~i~---~~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~ 962 (1230)
T 1u6g_C 905 R--QYLLLHSLKEIIS---SASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLID 962 (1230)
T ss_dssp G--HHHHHHHHHHHHH---SSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSS
T ss_pred H--HHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 2--4988999999982---38766677669999999998733830446899998875665067
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=41.50 Aligned_cols=57 Identities=14% Similarity=0.241 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999887698649999999987231688--6144999999999999618999
Q 000688 1008 GAECLVDIFICFFDVVRSQLPGVVSILTGFIRSPI--QGPASTGVAALLHLAGELGSRL 1064 (1350)
Q Consensus 1008 aL~~l~~Lf~~yf~~l~~~l~~~L~lL~~~i~~~~--~~ia~ig~~~l~~ll~~~~~~f 1064 (1350)
++..+.++....-+.+.+....++..+..++..++ ..+......|+..++...|..|
T Consensus 659 a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~ 717 (861)
T 2bpt_A 659 AVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADF 717 (861)
T ss_dssp HHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHCHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999987454031119999999999727865567665999999999999840508
Done!