BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000690
(1350 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 895 bits (2312), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/1261 (38%), Positives = 714/1261 (56%), Gaps = 58/1261 (4%)
Query: 92 LFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGS------NVNNMD----- 140
+FR+A LD + M +G+L A +HG + P+ + F D+ +SF S N NM
Sbjct: 38 MFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKR 97
Query: 141 ----KMMQEVLKYAFYFLVVGXXXXXXXXXXXXCWMWTGERQSIKMRIKYLEAALNQDVQ 196
K+ +E+ YA+Y+ +G W RQ K+R K+ A +NQ++
Sbjct: 98 AMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIG 157
Query: 197 YFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLA 256
+FD ++ + D + + I +K+G F +ATF GF +GF+ W+L LV LA
Sbjct: 158 WFDVH-DVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILA 216
Query: 257 VVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSA 316
+ P++ + I A L+ K A ++AG + E+ + IR V AF G+ K L+ Y++
Sbjct: 217 ISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNN 276
Query: 317 LKVAQRLGYKSGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMI 376
L+ A+RLG K + +GA + +++ SYAL WYG LV + G + F+V+I
Sbjct: 277 LEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLI 336
Query: 377 GGLALAQAAPSISXXXXXXXXXXXIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFS 436
G ++ QA+P+I +F+IID+KPSID S+SG + D++ G +E K++ FS
Sbjct: 337 GAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFS 396
Query: 437 YPSRPEVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDIKS 496
YPSR EV+IL +L V +G+T+AL L++R YDP G V +DG DI++
Sbjct: 397 YPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRT 456
Query: 497 LKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGF 556
+ +R+LR+ IG+VSQEP LFATTI ENI GR D ++EIE+A + ANAY FI+KLP F
Sbjct: 457 INVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQF 516
Query: 557 DTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGR 616
DT VGERG QLSGGQKQRIAIARA+++NP ILLLDEATSALD+ESE +VQ ALD+ GR
Sbjct: 517 DTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGR 576
Query: 617 TTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEAAHETALX 676
TT+VIAHRLST+R ADV+A G + E G HDEL+ E G+Y KL+ Q A +E L
Sbjct: 577 TTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMR--EKGIYFKLVMTQTAGNEIELG 634
Query: 677 XXXXXXX----XXXXXXXXXXXPIIARNSSYGRSPYXXXXXXXXXXXXXXXXXATYPSYR 732
+I R S+ P +
Sbjct: 635 NEACKSKDEIDNLDMSSKDSGSSLIRRRST--------------------RKSICGPHDQ 674
Query: 733 HEKLAFKEQ------ASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSV 786
KL+ KE +SFWR+ K+NS EW Y +VG ++I G L F+ + S ++ V
Sbjct: 675 DRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGV 734
Query: 787 YYN---PDHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAV 843
+ N P+ + +L++G+ S F LQ + GE LTKR+R + ++
Sbjct: 735 FTNGGPPETQRQNSNLFSLLFLILGIISFITFF--LQGFTFGKAGEILTKRLRYMVFKSM 792
Query: 844 LKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWR 903
L+ +++WFD +N + + RLA DA V+ A G R+ VI QN A + + W+
Sbjct: 793 LRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQ 852
Query: 904 LALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMI 963
L L+L+A+ P++ A V++ + G + + + ++A EAI N RTV + E
Sbjct: 853 LTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKF 912
Query: 964 VGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIR 1023
+++ +LQ P R K + G + Q +Y SYA + ++LV + F +
Sbjct: 913 ETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLL 972
Query: 1024 VFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEV 1083
VF ++ A + + APD+ K + + ++++ EI+ P+ L G V
Sbjct: 973 VFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLK-PNMLEGNV 1031
Query: 1084 ELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVM 1143
+ V F+YP+RP IP+ + LSL + G+TLALVG SGCGKS+V+ L++RFY+P +G V
Sbjct: 1032 QFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVF 1091
Query: 1144 IDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHXXXXXX--XXXXXXRLANAD 1201
+DGK+I++ N++ LR + IV QEP LF +I ENIAYG + AN
Sbjct: 1092 LDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIH 1151
Query: 1202 KFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQ 1261
+FI SLPD Y T VG++G QLSGGQKQR+AIARA VR+ I+LLDEATSALD ESE+ VQ
Sbjct: 1152 QFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQ 1211
Query: 1262 EALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQL 1321
EALD+A G+T IV+AHRLSTI+NA +I VI +GKV E G+H LL G Y M+ +
Sbjct: 1212 EALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQK--GIYFSMVSV 1269
Query: 1322 Q 1322
Q
Sbjct: 1270 Q 1270
Score = 361 bits (926), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 211/594 (35%), Positives = 314/594 (52%), Gaps = 7/594 (1%)
Query: 83 DVTPVGLGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKM 142
DV P + + +S ++ +G A ++G P F F+ +V F +N +
Sbjct: 687 DVPPASFWRILKL-NSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVF-TNGGPPETQ 744
Query: 143 MQEVLKYAFYFLVVGXXXXXXXXXXXXCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEV 202
Q ++ FL++G + GE + ++R ++ L QDV +FD
Sbjct: 745 RQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPK 804
Query: 203 RTSDVVYA-INTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLI 261
T+ + + DA V+ A +L +A TG + WQL L+ LA+VP+I
Sbjct: 805 NTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPII 864
Query: 262 AVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQ 321
A+ G + L+ A K ++ L +G I + + R V + E K Y+ +L++
Sbjct: 865 AIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPY 924
Query: 322 RLGYKSGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLAL 381
R K G+ T +++ SYA +G YLV + A++ G +A+
Sbjct: 925 RNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAV 984
Query: 382 AQAAPSISXXXXXXXXXXXIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRP 441
Q + I RII+ P ID S GL+ + + G ++ V F+YP+RP
Sbjct: 985 GQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRP 1044
Query: 442 EVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDIKSLKLRW 501
+ +L SL V G+T+AL L+ERFYDP +G V LDG +IK L ++W
Sbjct: 1045 SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQW 1104
Query: 502 LRQQIGLVSQEPALFATTIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDTQ 559
LR Q+G+VSQEP LF +I ENI G EI AA+ AN + FI LPD ++T+
Sbjct: 1105 LRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTR 1164
Query: 560 VGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTL 619
VG++G QLSGGQKQRIAIARA+++ P ILLLDEATSALD+ESEK+VQEALD+ GRT +
Sbjct: 1165 VGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCI 1224
Query: 620 VIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEAAHET 673
VIAHRLSTI+ AD++ V+Q G V E GTH +L+A + G+Y ++ +Q A +
Sbjct: 1225 VIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLA--QKGIYFSMVSVQAGAKRS 1276
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 893 bits (2308), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/1261 (38%), Positives = 714/1261 (56%), Gaps = 58/1261 (4%)
Query: 92 LFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGS------NVNNMD----- 140
+FR+A LD + M +G+L A +HG + P+ + F D+ +SF S N NM
Sbjct: 38 MFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKR 97
Query: 141 ----KMMQEVLKYAFYFLVVGXXXXXXXXXXXXCWMWTGERQSIKMRIKYLEAALNQDVQ 196
K+ +E+ YA+Y+ +G W RQ K+R K+ A +NQ++
Sbjct: 98 AMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIG 157
Query: 197 YFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLA 256
+FD ++ + D + + I +K+G F +ATF GF +GF+ W+L LV LA
Sbjct: 158 WFDVH-DVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILA 216
Query: 257 VVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSA 316
+ P++ + I A L+ K A ++AG + E+ + IR V AF G+ K L+ Y++
Sbjct: 217 ISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNN 276
Query: 317 LKVAQRLGYKSGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMI 376
L+ A+RLG K + +GA + +++ SYAL WYG LV + G + F+V+I
Sbjct: 277 LEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLI 336
Query: 377 GGLALAQAAPSISXXXXXXXXXXXIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFS 436
G ++ QA+P+I +F+IID+KPSID S+SG + D++ G +E K++ FS
Sbjct: 337 GAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFS 396
Query: 437 YPSRPEVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDIKS 496
YPSR EV+IL +L V +G+T+AL L++R YDP G V +DG DI++
Sbjct: 397 YPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRT 456
Query: 497 LKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGF 556
+ +R+LR+ IG+VSQEP LFATTI ENI GR D ++EIE+A + ANAY FI+KLP F
Sbjct: 457 INVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQF 516
Query: 557 DTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGR 616
DT VGERG QLSGGQKQRIAIARA+++NP ILLLDEATSALD+ESE +VQ ALD+ GR
Sbjct: 517 DTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGR 576
Query: 617 TTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEAAHETALX 676
TT+VIAHRLST+R ADV+A G + E G HDEL+ E G+Y KL+ Q A +E L
Sbjct: 577 TTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMR--EKGIYFKLVMTQTAGNEIELG 634
Query: 677 XXXXXXX----XXXXXXXXXXXPIIARNSSYGRSPYXXXXXXXXXXXXXXXXXATYPSYR 732
+I R S+ P +
Sbjct: 635 NEACKSKDEIDNLDMSSKDSGSSLIRRRST--------------------RKSICGPHDQ 674
Query: 733 HEKLAFKEQ------ASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSV 786
KL+ KE +SFWR+ K+NS EW Y +VG ++I G L F+ + S ++ V
Sbjct: 675 DRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGV 734
Query: 787 YYN---PDHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAV 843
+ N P+ + +L++G+ S F LQ + GE LTKR+R + ++
Sbjct: 735 FTNGGPPETQRQNSNLFSLLFLILGIISFITFF--LQGFTFGKAGEILTKRLRYMVFKSM 792
Query: 844 LKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWR 903
L+ +++WFD +N + + RLA DA V+ A G R+ VI QN A + + W+
Sbjct: 793 LRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQ 852
Query: 904 LALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMI 963
L L+L+A+ P++ A V++ + G + + + ++A EAI N RTV + E
Sbjct: 853 LTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKF 912
Query: 964 VGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIR 1023
+++ +LQ P R K + G + Q +Y SYA + ++LV + F +
Sbjct: 913 ETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAACFRFGAYLVTQQLMTFENVLL 972
Query: 1024 VFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEV 1083
VF ++ A + + APD+ K + + ++++ EI+ P+ L G V
Sbjct: 973 VFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLK-PNMLEGNV 1031
Query: 1084 ELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVM 1143
+ V F+YP+RP IP+ + LSL + G+TLALVG SGCGKS+V+ L++RFY+P +G V
Sbjct: 1032 QFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVF 1091
Query: 1144 IDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHXXXXXX--XXXXXXRLANAD 1201
+DGK+I++ N++ LR + IV QEP LF +I ENIAYG + AN
Sbjct: 1092 LDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIH 1151
Query: 1202 KFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQ 1261
+FI SLPD Y T VG++G QLSGGQKQR+AIARA VR+ I+LLDEATSALD ESE+ VQ
Sbjct: 1152 QFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQ 1211
Query: 1262 EALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQL 1321
EALD+A G+T IV+AHRLSTI+NA +I VI +GKV E G+H LL G Y M+ +
Sbjct: 1212 EALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQK--GIYFSMVSV 1269
Query: 1322 Q 1322
Q
Sbjct: 1270 Q 1270
Score = 361 bits (927), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 211/594 (35%), Positives = 314/594 (52%), Gaps = 7/594 (1%)
Query: 83 DVTPVGLGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKM 142
DV P + + +S ++ +G A ++G P F F+ +V F +N +
Sbjct: 687 DVPPASFWRILKL-NSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVF-TNGGPPETQ 744
Query: 143 MQEVLKYAFYFLVVGXXXXXXXXXXXXCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEV 202
Q ++ FL++G + GE + ++R ++ L QDV +FD
Sbjct: 745 RQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPK 804
Query: 203 RTSDVVYA-INTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLI 261
T+ + + DA V+ A +L +A TG + WQL L+ LA+VP+I
Sbjct: 805 NTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPII 864
Query: 262 AVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQ 321
A+ G + L+ A K ++ L +G I + + R V + E K Y+ +L++
Sbjct: 865 AIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPY 924
Query: 322 RLGYKSGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLAL 381
R K G+ T +++ SYA +G YLV + A++ G +A+
Sbjct: 925 RNAMKKAHVFGITFSFTQAMMYFSYAACFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAV 984
Query: 382 AQAAPSISXXXXXXXXXXXIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRP 441
Q + I RII+ P ID S GL+ + + G ++ V F+YP+RP
Sbjct: 985 GQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRP 1044
Query: 442 EVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDIKSLKLRW 501
+ +L SL V G+T+AL L+ERFYDP +G V LDG +IK L ++W
Sbjct: 1045 SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQW 1104
Query: 502 LRQQIGLVSQEPALFATTIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDTQ 559
LR Q+G+VSQEP LF +I ENI G EI AA+ AN + FI LPD ++T+
Sbjct: 1105 LRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTR 1164
Query: 560 VGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTL 619
VG++G QLSGGQKQRIAIARA+++ P ILLLDEATSALD+ESEK+VQEALD+ GRT +
Sbjct: 1165 VGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCI 1224
Query: 620 VIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEAAHET 673
VIAHRLSTI+ AD++ V+Q G V E GTH +L+A + G+Y ++ +Q A +
Sbjct: 1225 VIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLA--QKGIYFSMVSVQAGAKRS 1276
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 385 bits (989), Expect = e-107, Method: Compositional matrix adjust.
Identities = 216/601 (35%), Positives = 340/601 (56%), Gaps = 21/601 (3%)
Query: 84 VTPVGLGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSF----------- 132
V V + +L+R+ +L+ +L+ IG+L A + G P+ + +F
Sbjct: 57 VNKVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNG 116
Query: 133 ------GSNVNNMDKMMQEVLKYAFYFLVVGXXXXXXXXXXXXCWMWTGERQSIKMRIKY 186
G N D +V+ + + + C+++ E+ + ++R ++
Sbjct: 117 STFLPTGQNYTKTD-FEHDVMNVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREF 175
Query: 187 LEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSA 246
+++ L Q++ +FDT + + + + V++ +K+G YL+ F+TGF V F+
Sbjct: 176 VKSILRQEISWFDTN-HSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTH 234
Query: 247 VWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGE 306
WQL LV LAV P+ A+ G A S++ A + ++AG +VE+T+ IR V + G
Sbjct: 235 SWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGL 294
Query: 307 SKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGL 366
L+ YS+A++ A++ G G G+ GA F S+AL + G V N G
Sbjct: 295 RYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGD 354
Query: 367 AIATMFAVMIGGLALAQAAPSISXXXXXXXXXXXIFRIIDHKPSIDRNSESGLELDSVSG 426
+ T +VM+G +AL A P ++ I+ ++D KP ID +S++G + + G
Sbjct: 355 MLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKG 414
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQ 486
I +++V F+YPSRP+V IL +L V AG+T+AL L+ R+YD G+
Sbjct: 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGK 474
Query: 487 VLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAY 546
+ +DG D++ + L +LR+ + +VSQEPALF TI+ENI LG+ E+ A ++ANA
Sbjct: 475 ITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAE 534
Query: 547 SFIIKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQ 606
FI LP+G++T VG+RG QLSGGQKQRIAIARA+++NP ILLLDEATSALD+ESE +VQ
Sbjct: 535 KFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQ 594
Query: 607 EALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRM 666
+ALD+ GRTT++IAHRLSTIR AD++ + G V E+G H L+A + G+Y L+
Sbjct: 595 QALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMA--QQGLYYDLVTA 652
Query: 667 Q 667
Q
Sbjct: 653 Q 653
Score = 357 bits (917), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 212/589 (35%), Positives = 320/589 (54%), Gaps = 15/589 (2%)
Query: 741 QASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYY-NPDHAYMIREI 799
Q ++ + + P + +G + I G + ++ ++ M+V+ NP A + +
Sbjct: 736 QKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNP--ADFLSQG 793
Query: 800 AKYCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESA 859
+ + + L++A+ + + L F I E+LT+ +R K+ VL I +FD +N S
Sbjct: 794 HFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASG 853
Query: 860 RIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAAT 919
+I+ RLA D N+R+AI R ++ M+ F W++AL++IA+ P+V
Sbjct: 854 KISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQ 913
Query: 920 VLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCF 979
L+ G + + + + ++A EAI NVRTV A E F L P +
Sbjct: 914 YLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAI 973
Query: 980 WKGQIAGSGYGVAQFCLY----ASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGA 1035
+ I G YG A LY +Y +GL + + + +RV + +S +
Sbjct: 974 KEAFIQGLSYGCASSVLYLLNTCAYRMGL--ALIITDPPTMQPMRVLRVMYAITISTSTL 1031
Query: 1036 AETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSR 1095
+ P++ K A +F +L + ++I D +L G+V K+V F+YP R
Sbjct: 1032 GFATSYFPEYAKATFAGGIIFGMLRKISKI--DSLSLAGEKKKLYGKVIFKNVRFAYPER 1089
Query: 1096 PDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLK 1155
P+I I + LS G+TLALVGPSGCGKS+V+AL++RFY+ G + IDG +I+ N +
Sbjct: 1090 PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPE 1149
Query: 1156 SLRRHMAIVPQEPCLFASTIYENIAYG--HXXXXXXXXXXXXRLANADKFISSLPDGYKT 1213
R +AIV QEP LF +I ENI YG RLAN FI+ LP+G++T
Sbjct: 1150 HTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFET 1209
Query: 1214 FVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTT 1273
VG+RG QLSGGQKQR+AIARA VR +I+LLDEATSALD ESE+ VQEALDRA G+T
Sbjct: 1210 RVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTC 1269
Query: 1274 IVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 1322
IV+AHRL+T+ NA IAV+ +G + E G+H+ L+ G Y ++ Q Q
Sbjct: 1270 IVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEK--GAYYKLTQKQ 1316
Score = 355 bits (911), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 202/528 (38%), Positives = 302/528 (57%), Gaps = 16/528 (3%)
Query: 827 VGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQN 886
V E + R+R + + ++L+ EI+WFD N S +A +L + V+ GD+I + Q
Sbjct: 163 VAEQMNNRLRREFVKSILRQEISWFDT--NHSGTLATKLFDNLERVKEGTGDKIGMAFQY 220
Query: 887 TALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGE 946
+ + F W+L LV++AV P+ M F+ ++KA ++ E
Sbjct: 221 LSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEE 280
Query: 947 AIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWY 1006
I ++RTV + N + +S+ ++ + KG G +G Q + S+AL +
Sbjct: 281 TISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYI 340
Query: 1007 SSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLA-PDFIKGGRAM---RSVFDLLDRK 1062
V G +F + F +M+ + L LA P G A ++++LDRK
Sbjct: 341 GVGWVHDGSLNFGDMLTTFSSVMM----GSMALGLAGPQLAVLGTAQGAASGIYEVLDRK 396
Query: 1063 TEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGC 1122
I+ A +++G++ +++V F+YPSRPD+PI R ++LR AG+T+ALVG SGC
Sbjct: 397 PVIDSSS-KAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGC 455
Query: 1123 GKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYG 1182
GKS++I+L+ R+Y+ G++ IDG D+R NL+ LR+++A+V QEP LF TI ENI+ G
Sbjct: 456 GKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLG 515
Query: 1183 HXXXXXXXXXXXXRLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEI 1242
++ANA+KFI +LP+GY T VG+RG QLSGGQKQR+AIARA VR +I
Sbjct: 516 KEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKI 575
Query: 1243 MLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGS 1302
+LLDEATSALDAESE VQ+ALD+A G+TTI++AHRLSTIRNA +I +G+V E+G
Sbjct: 576 LLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGD 635
Query: 1303 HSHLLKNNPDGCYARMIQLQRFT---HSQVIGMTSGSSSSARPKDDEE 1347
H L+ G Y ++ Q FT S G S +S AR + E
Sbjct: 636 HRALMAQQ--GLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHE 681
Score = 313 bits (803), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 195/575 (33%), Positives = 298/575 (51%), Gaps = 21/575 (3%)
Query: 101 YVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGXXX 160
++ M+ ++G F+ +P + FF +N F N + + + +A FLV+
Sbjct: 755 FIGMSTATIGGFI----YPTYSVFFTSFMNVFAGNPADF---LSQGHFWALMFLVLAAAQ 807
Query: 161 XXXXXXXXXCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYA-INTDAVIVQ 219
E + +R K L+Q + +FD+ S + + TD ++
Sbjct: 808 GICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLR 867
Query: 220 DAISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKS 279
AI + I L + V G + F WQ+AL+ +A++P++A + KS
Sbjct: 868 TAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKS 927
Query: 280 QEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGAT- 338
+ +G I + + +R V A E + + L + + K F +G+ G
Sbjct: 928 ASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCAS 987
Query: 339 ---YFVVFCSYALLLWYGGYLVRHHFTNGGL-AIATMFAVMIGGLALAQAAPSISXXXXX 394
Y + C+Y + L ++ T + + M+A+ I L A
Sbjct: 988 SVLYLLNTCAYRMGL---ALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKA 1044
Query: 395 XXXXXXIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVP 454
IF ++ ID S +G E + G + K+V F+YP RPE+ IL S +V
Sbjct: 1045 TFAGGIIFGMLRKISKIDSLSLAG-EKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVE 1103
Query: 455 AGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPA 514
G+T+AL L+ERFYD G++ +DG +IK+L R QI +VSQEP
Sbjct: 1104 PGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPT 1163
Query: 515 LFATTIKENILLGRPDADLN--EIEEAARVANAYSFIIKLPDGFDTQVGERGVQLSGGQK 572
LF +I ENI+ G + + ++EEAAR+AN ++FI +LP+GF+T+VG+RG QLSGGQK
Sbjct: 1164 LFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQK 1223
Query: 573 QRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKAD 632
QRIAIARA+++NP ILLLDEATSALD+ESEK+VQEALDR GRT +VIAHRL+T+ AD
Sbjct: 1224 QRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNAD 1283
Query: 633 VVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQ 667
+AV+ G++ E GTH +L++ E G Y KL + Q
Sbjct: 1284 CIAVVSNGTIIEKGTHTQLMS--EKGAYYKLTQKQ 1316
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 355 bits (912), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 204/498 (40%), Positives = 294/498 (59%), Gaps = 7/498 (1%)
Query: 174 TGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYL 233
+G+R ++R + L Q+V +FD + RT +++ +++D ++ +++E L + +
Sbjct: 89 SGQRIVNRLRTSLFSSILRQEVAFFD-KTRTGELINRLSSDTALLGRSVTENLSDGLRAG 147
Query: 234 ATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQT 293
A G ++ F LA L+VVP +++I I+ L KL +Q++L+QA + E+
Sbjct: 148 AQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEER 207
Query: 294 VVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYALLLWYG 353
+ +R V AF E ++ Y+S + +L K FA+ GAT +L+ G
Sbjct: 208 IGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKG 267
Query: 354 GYLV-RHHFTNGGLAIATMFAVMIGGLALAQAAPSISXXXXXXXXXXXIFRIIDHKPSID 412
G L+ H T G L+ M+A +G +++ + S ++ +++ +P +
Sbjct: 268 GLLMGSAHMTVGELSSFLMYAFWVG-ISIGGLSSFYSELMKGLGAGGRLWELLEREPKLP 326
Query: 413 RNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALXXXXXXXXXXX 472
N L S G +E K+V F+YP+RPEV I +FSL++P+G AL
Sbjct: 327 FNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTV 386
Query: 473 XXLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDAD 532
L+ R YDP SG + LDGHDI+ L WLR +IG VSQEP LF+ +I ENI G D
Sbjct: 387 LSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPS 446
Query: 533 ---LNEIEEAARVANAYSFIIKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILL 589
EI+ A VANA +FI P GF+T VGE+GV LSGGQKQRIAIARA+LKNP ILL
Sbjct: 447 SVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILL 506
Query: 590 LDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHD 649
LDEATSALD+E+E LVQEALDR M GRT LVIAHRLSTI+ A++VAVL QG ++E G H+
Sbjct: 507 LDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHE 566
Query: 650 ELIAKGENGVYAKLIRMQ 667
EL++K NG+Y KL+ Q
Sbjct: 567 ELLSK-PNGIYRKLMNKQ 583
Score = 319 bits (818), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 204/575 (35%), Positives = 317/575 (55%), Gaps = 31/575 (5%)
Query: 763 SVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELL---FNTL 819
++ SVI S F ++ I Y NP Y + + C +GLS+ L N +
Sbjct: 29 TMSSVISMSAPFFLGKIIDVI---YTNPTVDYS-DNLTRLC---LGLSAVFLCGAAANAI 81
Query: 820 QHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENES--ARIAARLALDANNVRSAIG 877
+ G+ + R+R + +++L+ E+A+FD+ R+++ AL +V +
Sbjct: 82 RVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLS 141
Query: 878 DRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAH 937
D ++ Q + V + F + LA +++V P V V+ +++ + + +
Sbjct: 142 DGLRAGAQAS----VGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSL 197
Query: 938 SKATQLAGEAIGNVRTVAAFNSELMIVGLFSSN----LQTPLRRCFWK-GQIAGSGYGVA 992
++ATQLA E IGNVRTV AF E+ + ++S +Q + F + G +G
Sbjct: 198 AQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGN 257
Query: 993 QFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAM 1052
L Y GL S + G + S + + +S G + + + +KG A
Sbjct: 258 LIVLSVLYKGGLLMGSAHMTVG--ELSSFLMYAFWVGISIGGLS---SFYSELMKGLGAG 312
Query: 1053 RSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGK 1112
+++LL+R+ ++ P + +G +E K+V F+YP+RP++PIF+D SL +G
Sbjct: 313 GRLWELLEREPKL-PFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGS 371
Query: 1113 TLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFA 1172
ALVGPSG GKS+V++L+ R Y+P+SG + +DG DIR+ N LR + V QEP LF+
Sbjct: 372 VTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS 431
Query: 1173 STIYENIAYGHXXXXXXXXXXXXRLA---NADKFISSLPDGYKTFVGERGVQLSGGQKQR 1229
+I ENIAYG R+A NA FI + P G+ T VGE+GV LSGGQKQR
Sbjct: 432 CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQR 491
Query: 1230 VAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVI 1289
+AIARA ++ +I+LLDEATSALDAE+E VQEALDR G+T +V+AHRLSTI+NA+++
Sbjct: 492 IAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMV 551
Query: 1290 AVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRF 1324
AV+D GK+ E G H LL + P+G Y +++ Q F
Sbjct: 552 AVLDQGKITEYGKHEELL-SKPNGIYRKLMNKQSF 585
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 353 bits (906), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 203/498 (40%), Positives = 293/498 (58%), Gaps = 7/498 (1%)
Query: 174 TGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYL 233
+G+R ++R + L Q+V +FD + RT +++ +++D ++ +++E L + +
Sbjct: 120 SGQRIVNRLRTSLFSSILRQEVAFFD-KTRTGELINRLSSDTALLGRSVTENLSDGLRAG 178
Query: 234 ATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQT 293
A G ++ F LA L+VVP +++I I+ L KL +Q++L+QA + E+
Sbjct: 179 AQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEER 238
Query: 294 VVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYALLLWYG 353
+ +R V AF E ++ Y+S + +L K FA+ GAT +L+ G
Sbjct: 239 IGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKG 298
Query: 354 GYLV-RHHFTNGGLAIATMFAVMIGGLALAQAAPSISXXXXXXXXXXXIFRIIDHKPSID 412
G L+ H T G L+ M+A +G +++ + S ++ +++ +P +
Sbjct: 299 GLLMGSAHMTVGELSSFLMYAFWVG-ISIGGLSSFYSELMKGLGAGGRLWELLEREPKLP 357
Query: 413 RNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALXXXXXXXXXXX 472
N L S G +E K+V F+YP+RPEV I +FSL++P+G AL
Sbjct: 358 FNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTV 417
Query: 473 XXLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDAD 532
L+ R YDP SG + LDGHDI+ L WLR +IG VSQEP LF+ +I ENI G D
Sbjct: 418 LSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPS 477
Query: 533 ---LNEIEEAARVANAYSFIIKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILL 589
EI+ A VANA +FI P GF+T VGE+GV LSGGQKQRIAIARA+LKNP ILL
Sbjct: 478 SVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILL 537
Query: 590 LDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHD 649
LDEATSALD+E+E LVQEALDR M GRT LVIAH LSTI+ A++VAVL QG ++E G H+
Sbjct: 538 LDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQGKITEYGKHE 597
Query: 650 ELIAKGENGVYAKLIRMQ 667
EL++K NG+Y KL+ Q
Sbjct: 598 ELLSK-PNGIYRKLMNKQ 614
Score = 315 bits (807), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 202/575 (35%), Positives = 315/575 (54%), Gaps = 31/575 (5%)
Query: 763 SVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELL---FNTL 819
++ SVI S F ++ I Y NP Y + + C +GLS+ L N +
Sbjct: 60 TMSSVISMSAPFFLGKIIDVI---YTNPTVDYS-DNLTRLC---LGLSAVFLCGAAANAI 112
Query: 820 QHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENES--ARIAARLALDANNVRSAIG 877
+ G+ + R+R + +++L+ E+A+FD+ R+++ AL +V +
Sbjct: 113 RVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLS 172
Query: 878 DRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAH 937
D ++ Q + V + F + LA +++V P V V+ +++ + + +
Sbjct: 173 DGLRAGAQAS----VGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSL 228
Query: 938 SKATQLAGEAIGNVRTVAAFNSELMIVGLFSSN----LQTPLRRCFWK-GQIAGSGYGVA 992
++ATQLA E IGNVRTV AF E+ + ++S +Q + F + G +G
Sbjct: 229 AQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGN 288
Query: 993 QFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAM 1052
L Y GL S + + S + + +S G + + + +KG A
Sbjct: 289 LIVLSVLYKGGLLMGS--AHMTVGELSSFLMYAFWVGISIGGLS---SFYSELMKGLGAG 343
Query: 1053 RSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGK 1112
+++LL+R+ ++ P + +G +E K+V F+YP+RP++PIF+D SL +G
Sbjct: 344 GRLWELLEREPKL-PFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGS 402
Query: 1113 TLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFA 1172
ALVGPSG GKS+V++L+ R Y+P+SG + +DG DIR+ N LR + V QEP LF+
Sbjct: 403 VTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS 462
Query: 1173 STIYENIAYGHXXXXXXXXXXXXRLA---NADKFISSLPDGYKTFVGERGVQLSGGQKQR 1229
+I ENIAYG R+A NA FI + P G+ T VGE+GV LSGGQKQR
Sbjct: 463 CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQR 522
Query: 1230 VAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVI 1289
+AIARA ++ +I+LLDEATSALDAE+E VQEALDR G+T +V+AH LSTI+NA+++
Sbjct: 523 IAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLSTIKNANMV 582
Query: 1290 AVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRF 1324
AV+D GK+ E G H LL + P+G Y +++ Q F
Sbjct: 583 AVLDQGKITEYGKHEELL-SKPNGIYRKLMNKQSF 616
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 264 bits (675), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 179/497 (36%), Positives = 250/497 (50%), Gaps = 7/497 (1%)
Query: 173 WTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHY 232
WT + +R K L L F + V+ + D +D I L N
Sbjct: 87 WTSNKILYDIR-KKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLD 145
Query: 233 LATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQ 292
T + ++ F +L L L + P + + L KL + +AL++ + +
Sbjct: 146 CITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHE 205
Query: 293 TVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYALLLWY 352
V I VV +F E + + K A V +++
Sbjct: 206 RVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGV 265
Query: 353 GGYL-VRHHFTNGGLAIATMFAVMIGGLALAQAAPSISXXXXXXXXXXXIFRIIDHKPSI 411
G YL + T G LA + ++ G L + S + +F++ID I
Sbjct: 266 GAYLAISGSITVGTLAAFVGYLELLFG-PLRRLVASFTTLTQSFASMDRVFQLIDEDYDI 324
Query: 412 DRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALXXXXXXXXXX 471
+N ++ G I++ HV F Y E IL + +L++ G+T+A
Sbjct: 325 -KNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKST 382
Query: 472 XXXLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDA 531
LI RFYD TSGQ+L+DGH+IK LR QIGLV Q+ LF+ T+KENILLGRP A
Sbjct: 383 LINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTA 442
Query: 532 DLNEIEEAARVANAYSFIIKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLD 591
E+ EAA++ANA+ FI+ LP G+DT+VGERGV+LSGGQKQR++IAR L NP IL+LD
Sbjct: 443 TDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILD 502
Query: 592 EATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDEL 651
EATSALD ESE ++QEALD RTTL++AHRLSTI AD + V++ G + E GTH EL
Sbjct: 503 EATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHREL 562
Query: 652 IAKGENGVYAKLIRMQE 668
IAK G Y L +Q
Sbjct: 563 IAK--QGAYEHLYSIQN 577
Score = 227 bits (578), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 118/274 (43%), Positives = 172/274 (62%), Gaps = 5/274 (1%)
Query: 1051 AMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARA 1110
+M VF L+D +I+ + A P+ + +G +++ HV F Y + PI +D++L
Sbjct: 310 SMDRVFQLIDEDYDIK-NGVGAQPIEIK-QGRIDIDHVSFQYNDN-EAPILKDINLSIEK 366
Query: 1111 GKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCL 1170
G+T+A VG SG GKS++I L+ RFY+ +SG+++IDG +I+ + SLR + +V Q+ L
Sbjct: 367 GETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNIL 426
Query: 1171 FASTIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKTFVGERGVQLSGGQKQRV 1230
F+ T+ ENI G ++ANA FI +LP GY T VGERGV+LSGGQKQR+
Sbjct: 427 FSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRL 486
Query: 1231 AIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIA 1290
+IAR F+ I++LDEATSALD ESE +QEALD +TT++VAHRLSTI +A I
Sbjct: 487 SIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIV 546
Query: 1291 VIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRF 1324
VI++G + E G+H L+ G Y + +Q
Sbjct: 547 VIENGHIVETGTHRELIAKQ--GAYEHLYSIQNL 578
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 261 bits (667), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 173/504 (34%), Positives = 265/504 (52%), Gaps = 18/504 (3%)
Query: 170 CWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNF 229
C W + + MR + + V +FD + T ++ I D+ V + S L
Sbjct: 88 CISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ-STGTLLSRITYDSEQVASSSSGALITV 146
Query: 230 IHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNI 289
+ A+ + F + F WQL+++ + + P++++ + + ++ Q + Q
Sbjct: 147 VREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTS 206
Query: 290 VEQTVVQIRVVFAFVG---ESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSY 346
EQ + + V F G E+K S+ +++ G K A + + +
Sbjct: 207 AEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQ---GMKMVSASSISDPIIQLIASLAL 263
Query: 347 ALLLWYGGY-LVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISXXXXX-XXXXXXIFRI 404
A +L+ + V T G I +F+ MI + ++ +++ +F I
Sbjct: 264 AFVLYAASFPSVMDSLTAG--TITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAI 321
Query: 405 IDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALXXX 464
+D + D E +D +G +E ++V F+YP R EV L N +L +PAGKT+AL
Sbjct: 322 LDSEQEKD---EGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGR 377
Query: 465 XXXXXXXXXXLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENI 524
LI RFYD G +L+DGHD++ L LR Q+ LVSQ LF T+ NI
Sbjct: 378 SGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNI 437
Query: 525 LLGRPDA-DLNEIEEAARVANAYSFIIKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLK 583
R + +IEEAAR+A A FI K+ +G DT +GE GV LSGGQ+QRIAIARA+L+
Sbjct: 438 AYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 497
Query: 584 NPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVS 643
+ IL+LDEATSALD+ESE+ +Q ALD RT+LVIAHRLSTI +AD + V++ G +
Sbjct: 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIV 557
Query: 644 EIGTHDELIAKGENGVYAKLIRMQ 667
E GTH EL+A ++GVYA+L +MQ
Sbjct: 558 ERGTHSELLA--QHGVYAQLHKMQ 579
Score = 260 bits (665), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 168/492 (34%), Positives = 277/492 (56%), Gaps = 16/492 (3%)
Query: 835 VREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVAC 894
+R ++ ++ +A+FD++ + + +R+ D+ V S+ + +V+ A ++
Sbjct: 100 MRRRLFGHMMGMPVAFFDKQS--TGTLLSRITYDSEQVASSSSGALITVVREGASIIGLF 157
Query: 895 TAGFVLQWRLALVLIAVFPVV-VAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRT 953
F W+L+++L+ + P+V +A V+ K F + S +M+ + T A + + +
Sbjct: 158 IMMFYYSWQLSIILVVLAPIVSIAIRVVSKRF-RSISKNMQNTMGQVTTSAEQMLKGHKE 216
Query: 954 VAAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALG-LWYSSWLVK 1012
V F + + F + +R K ++ S L AS AL + Y++
Sbjct: 217 VLIFGGQEVETKRFD-KVSNKMRLQGMK-MVSASSISDPIIQLIASLALAFVLYAASFPS 274
Query: 1013 HGISDFSKTIRVFMVLMVSANGAAETLT-LAPDFIKGGRAMRSVFDLLDRKTEIEPDDPD 1071
S + TI V M++ ++LT + F +G A +++F +LD +E E D+
Sbjct: 275 VMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILD--SEQEKDE-- 330
Query: 1072 ATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALV 1131
V DR G++E ++V F+YP R ++P R+++L+ AGKT+ALVG SG GKS++ +L+
Sbjct: 331 GKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLI 389
Query: 1132 QRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHXXX-XXXX 1190
RFY+ G +++DG D+R+Y L SLR +A+V Q LF T+ NIAY
Sbjct: 390 TRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQ 449
Query: 1191 XXXXXRLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATS 1250
R+A A FI+ + +G T +GE GV LSGGQ+QR+AIARA +R + I++LDEATS
Sbjct: 450 IEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATS 509
Query: 1251 ALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNN 1310
ALD ESER++Q ALD +T++V+AHRLSTI A I V++DG + E G+HS LL +
Sbjct: 510 ALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQH 569
Query: 1311 PDGCYARMIQLQ 1322
G YA++ ++Q
Sbjct: 570 --GVYAQLHKMQ 579
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 259 bits (663), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 168/492 (34%), Positives = 278/492 (56%), Gaps = 16/492 (3%)
Query: 835 VREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVAC 894
+R ++ ++ +++FD++ + + +R+ D+ V S+ + +V+ A ++
Sbjct: 100 MRRRLFGHMMGMPVSFFDKQS--TGTLLSRITYDSEQVASSSSGALITVVREGASIIGLF 157
Query: 895 TAGFVLQWRLALVLIAVFPVV-VAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRT 953
F W+L+++LI + P+V +A V+ K F + S +M+ + T A + + +
Sbjct: 158 IMMFYYSWQLSIILIVLAPIVSIAIRVVSKRF-RNISKNMQNTMGQVTTSAEQMLKGHKE 216
Query: 954 VAAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALG-LWYSSWLVK 1012
V F + + F + +R K ++ S L AS AL + Y++
Sbjct: 217 VLIFGGQEVETKRFD-KVSNRMRLQGMK-MVSASSISDPIIQLIASLALAFVLYAASFPS 274
Query: 1013 HGISDFSKTIRVFMVLMVSANGAAETLT-LAPDFIKGGRAMRSVFDLLDRKTEIEPDDPD 1071
S + TI V M++ ++LT + F +G A +++F +LD +E E D+
Sbjct: 275 VMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFTILD--SEQEKDE-- 330
Query: 1072 ATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALV 1131
V +R G+VE ++V F+YP R D+P R+++L+ AGKT+ALVG SG GKS++ +L+
Sbjct: 331 GKRVIERATGDVEFRNVTFTYPGR-DVPALRNINLKIPAGKTVALVGRSGSGKSTIASLI 389
Query: 1132 QRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHXXX-XXXX 1190
RFY+ G +++DG D+R+Y L SLR +A+V Q LF T+ NIAY
Sbjct: 390 TRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQ 449
Query: 1191 XXXXXRLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATS 1250
R+A A FI+ + +G T +GE GV LSGGQ+QR+AIARA +R + I++LDEATS
Sbjct: 450 IEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATS 509
Query: 1251 ALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNN 1310
ALD ESER++Q ALD +T++V+AHRLSTI A I V++DG + E G+H+ LL++
Sbjct: 510 ALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHR 569
Query: 1311 PDGCYARMIQLQ 1322
G YA++ ++Q
Sbjct: 570 --GVYAQLHKMQ 579
Score = 258 bits (660), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 170/504 (33%), Positives = 264/504 (52%), Gaps = 18/504 (3%)
Query: 170 CWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNF 229
C W + + MR + + V +FD + T ++ I D+ V + S L
Sbjct: 88 CISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQ-STGTLLSRITYDSEQVASSSSGALITV 146
Query: 230 IHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNI 289
+ A+ + F + F WQL+++ + + P++++ + + ++ Q + Q
Sbjct: 147 VREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTS 206
Query: 290 VEQTVVQIRVVFAFVGESKALQAYSSALKVAQRL---GYKSGFAKGMGLGATYFVVFCSY 346
EQ + + V F G+ + + KV+ R+ G K A + + +
Sbjct: 207 AEQMLKGHKEVLIFGGQEVETKRFD---KVSNRMRLQGMKMVSASSISDPIIQLIASLAL 263
Query: 347 ALLLWYGGY-LVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISXXXXX-XXXXXXIFRI 404
A +L+ + V T G I +F+ MI + ++ +++ +F I
Sbjct: 264 AFVLYAASFPSVMDSLTAG--TITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFTI 321
Query: 405 IDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALXXX 464
+D + D E ++ +G +E ++V F+YP R +V L N +L +PAGKT+AL
Sbjct: 322 LDSEQEKD---EGKRVIERATGDVEFRNVTFTYPGR-DVPALRNINLKIPAGKTVALVGR 377
Query: 465 XXXXXXXXXXLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENI 524
LI RFYD G++L+DGHD++ L LR Q+ LVSQ LF T+ NI
Sbjct: 378 SGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNI 437
Query: 525 LLGRPDA-DLNEIEEAARVANAYSFIIKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLK 583
R + +IEEAAR+A A FI K+ +G DT +GE GV LSGGQ+QRIAIARA+L+
Sbjct: 438 AYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR 497
Query: 584 NPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVS 643
+ IL+LDEATSALD+ESE+ +Q ALD RT+LVIAHRLSTI KAD + V++ G +
Sbjct: 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIV 557
Query: 644 EIGTHDELIAKGENGVYAKLIRMQ 667
E GTH++L+ GVYA+L +MQ
Sbjct: 558 ERGTHNDLLE--HRGVYAQLHKMQ 579
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 255 bits (651), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 175/502 (34%), Positives = 265/502 (52%), Gaps = 20/502 (3%)
Query: 827 VGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQN 886
V N+ ++R ++ + + +FDQE + + +R+ D+ V A + IV+
Sbjct: 92 VSGNVVMQMRRRLFNHFMHMPVRFFDQES--TGGLLSRITYDSEQVAGATSRALVSIVRE 149
Query: 887 TALMLVACTAGFVLQWRLALVLIAVFPVVV-AATVLQKMFMKGFSGDMEAAHSKATQLAG 945
A ++ T F W+L+LVLI V PVV A + + K F K S +M+ A T A
Sbjct: 150 GASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRK-ISRNMQTAMGHVTSSAE 208
Query: 946 EAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLW 1005
+ + + V ++ + + F + +R+ K S +A + +L L+
Sbjct: 209 QMLKGHKVVLSYGGQEVERKRFD-KVSNSMRQQTMK---LVSAQSIADPVIQMIASLALF 264
Query: 1006 YSSWLVKHGISDFSKTIRVFMVLMVSANGAAETL----TLAPDFIKGGRAMRSVFDLLDR 1061
+L T F V+ + G L ++ +F +G A +++F L+D
Sbjct: 265 AVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDL 324
Query: 1062 KTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSG 1121
+TE + +A +R+ GEV++K V F+Y + P +S GKT+ALVG SG
Sbjct: 325 ETERDNGKYEA----ERVNGEVDVKDVTFTYQGKEK-PALSHVSFSIPQGKTVALVGRSG 379
Query: 1122 CGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAY 1181
GKS++ L RFY+ SG + +DG D+R Y L +LRRH A+V Q LF TI NIAY
Sbjct: 380 SGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAY 439
Query: 1182 G-HXXXXXXXXXXXXRLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKA 1240
R A+A +FI ++P G T +GE G LSGGQ+QRVAIARA +R A
Sbjct: 440 AAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDA 499
Query: 1241 EIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAEL 1300
+++LDEATSALD ESER++Q ALD KT +V+AHRLSTI A I V+D+G++ E
Sbjct: 500 PVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIER 559
Query: 1301 GSHSHLLKNNPDGCYARMIQLQ 1322
G H+ LL DG YA++ ++Q
Sbjct: 560 GRHADLLAQ--DGAYAQLHRIQ 579
Score = 243 bits (621), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 163/501 (32%), Positives = 257/501 (51%), Gaps = 12/501 (2%)
Query: 170 CWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNF 229
C W ++MR + ++ V++FD E T ++ I D+ V A S L +
Sbjct: 88 CLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQE-STGGLLSRITYDSEQVAGATSRALVSI 146
Query: 230 IHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNI 289
+ A+ + + F WQL+LV + V P++A + + K++ Q A+ +
Sbjct: 147 VREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSS 206
Query: 290 VEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVV-FCSYAL 348
EQ + +VV ++ G+ + + ++ K A+ + + +A+
Sbjct: 207 AEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAV 266
Query: 349 LLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSI-SXXXXXXXXXXXIFRIIDH 407
L +R T G + +F+ M G + +A S+ S +F ++D
Sbjct: 267 LFLASVDSIRAELTPGTFTV--VFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDL 324
Query: 408 KPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALXXXXXX 467
+ D E + V+G +++K V F+Y + E L++ S ++P GKT+AL
Sbjct: 325 ETERDNGK---YEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGS 380
Query: 468 XXXXXXXLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLG 527
L RFYD SG + LDGHD++ KL LR+ LVSQ LF TI NI
Sbjct: 381 GKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYA 440
Query: 528 -RPDADLNEIEEAARVANAYSFIIKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPA 586
+ +IE+AAR A+A FI +P G DT +GE G LSGGQ+QR+AIARA+L++
Sbjct: 441 AEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAP 500
Query: 587 ILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIG 646
+L+LDEATSALD+ESE+ +Q ALD +T LVIAHRLSTI +AD + V+ +G + E G
Sbjct: 501 VLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERG 560
Query: 647 THDELIAKGENGVYAKLIRMQ 667
H +L+A ++G YA+L R+Q
Sbjct: 561 RHADLLA--QDGAYAQLHRIQ 579
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 598
Score = 248 bits (632), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 166/591 (28%), Positives = 296/591 (50%), Gaps = 16/591 (2%)
Query: 734 EKLAFKEQASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHA 793
EK A K ++ RL P ++ V + L Y++ + V + P
Sbjct: 14 EKPALKNPTATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRF 73
Query: 794 YMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQ 853
++ +Y +L + + L LQ + +++ R+R+++ + + + +FD+
Sbjct: 74 DLL---PRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDR 130
Query: 854 EENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFP 913
+ I +R+ D +N+ + +G+ I + A F + L+LV +++ P
Sbjct: 131 TPH--GDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVP 188
Query: 914 VVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQT 973
+ V T + + + + + + + E I + + F E + F +
Sbjct: 189 LTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFD-RVNE 247
Query: 974 PLRRCFWKGQI-AGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSA 1032
LR+ K QI +G + +AL + WL I TI F+
Sbjct: 248 SLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVG-TIATFIGYSRQF 306
Query: 1033 NGAAETLTLAPDFIKGGRA-MRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFS 1091
L+ + I+ A +F++LD E E DDPDA + + +RGE+E K+V FS
Sbjct: 307 TRPLNELSNQFNMIQMALASAERIFEILD--LEEEKDDPDAVELRE-VRGEIEFKNVWFS 363
Query: 1092 YPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRK 1151
Y + P+ +D++ + G+ +ALVGP+G GK++++ L+ RFY+ G++++DG DIRK
Sbjct: 364 YDKKK--PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRK 421
Query: 1152 YNLKSLRRHMAIVPQEPCLFASTIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGY 1211
SLR + IV Q+ LF++T+ EN+ YG+ +L ++D FI LP+GY
Sbjct: 422 IKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGY 481
Query: 1212 KTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGK 1271
+T + + G LS GQ+Q +AI RAF+ +I++LDEATS +D ++E+S+Q A+ + GK
Sbjct: 482 ETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGK 541
Query: 1272 TTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 1322
T+I++AHRL+TI+NA +I V+ DG++ E+G H L++ G Y + Q
Sbjct: 542 TSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKR--GFYYELFTSQ 590
Score = 244 bits (622), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 158/490 (32%), Positives = 260/490 (53%), Gaps = 13/490 (2%)
Query: 181 KMRIKYLEAALNQDVQYFDTEVRT--SDVVYAINTDAVIVQDAISEKLGNFIHYLATFVT 238
++R + E V +FD RT D++ + D + + + + F + T
Sbjct: 111 RLRKELFEKLQRVPVGFFD---RTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAG 167
Query: 239 GFAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIR 298
+ F L+LVTL++VPL +I I ++ K ++Q L Q I+E+ + +
Sbjct: 168 AVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLT 227
Query: 299 VVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYALLLWYGGYL-V 357
V+ F E K ++ + + +++G K+ G+ V +AL+ +GG+L +
Sbjct: 228 VIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLAL 287
Query: 358 RHHFTNGGLAIATMFAVMIGGLALAQAAPSISXXXXXXXXXXXIFRIIDHKPSIDRNSES 417
+ T G +A ++ L + + + IF I+D + +++
Sbjct: 288 KDIITVGTIATFIGYSRQFTR-PLNELSNQFNMIQMALASAERIFEILDLEE--EKDDPD 344
Query: 418 GLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIE 477
+EL V G IE K+V FSY + V L + + + G+ +AL L+
Sbjct: 345 AVELREVRGEIEFKNVWFSYDKKKPV--LKDITFHIKPGQKVALVGPTGSGKTTIVNLLM 402
Query: 478 RFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIE 537
RFYD GQ+L+DG DI+ +K LR IG+V Q+ LF+TT+KEN+ G P A EI+
Sbjct: 403 RFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIK 462
Query: 538 EAARVANAYSFIIKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSAL 597
EAA++ ++ FI LP+G++T + + G LS GQ+Q +AI RA L NP IL+LDEATS +
Sbjct: 463 EAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNV 522
Query: 598 DSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGEN 657
D+++EK +Q A+ + M G+T+++IAHRL+TI+ AD++ VL+ G + E+G HDELI K
Sbjct: 523 DTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK--R 580
Query: 658 GVYAKLIRMQ 667
G Y +L Q
Sbjct: 581 GFYYELFTSQ 590
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 233 bits (593), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 128/272 (47%), Positives = 175/272 (64%), Gaps = 6/272 (2%)
Query: 1052 MRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAG 1111
M ++FDLL +TE++ D P A P+ + +G +E ++V FSY + +D+S G
Sbjct: 25 MENMFDLLKEETEVK-DLPGAGPLRFQ-KGRIEFENVHFSYADGRET--LQDVSFTVMPG 80
Query: 1112 KTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLF 1171
+TLALVGPSG GKS+++ L+ RFY+ SSG + IDG+DI + SLR H+ +VPQ+ LF
Sbjct: 81 QTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLF 140
Query: 1172 ASTIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVA 1231
TI +NI YG + A I + P+GY+T VGERG++LSGG+KQRVA
Sbjct: 141 NDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVA 200
Query: 1232 IARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAV 1291
IAR ++ I+LLDEATSALD +ER++Q +L + C+ +TTIVVAHRLST+ NA I V
Sbjct: 201 IARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILV 260
Query: 1292 IDDGKVAELGSHSHLLKNNPDGCYARMIQLQR 1323
I DG + E G H LL G YA M QLQ+
Sbjct: 261 IKDGCIVERGRHEALLSRG--GVYADMWQLQQ 290
Score = 206 bits (525), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 111/249 (44%), Positives = 159/249 (63%), Gaps = 4/249 (1%)
Query: 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSG 485
G IE ++V FSY E L + S TV G+T+AL L+ RFYD +SG
Sbjct: 52 GRIEFENVHFSYADGRET--LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSG 109
Query: 486 QVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANA 545
+ +DG DI + LR IG+V Q+ LF TI +NI GR A +E+E AA+ A
Sbjct: 110 CIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGI 169
Query: 546 YSFIIKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLV 605
+ I+ P+G+ TQVGERG++LSGG+KQR+AIAR +LK P I+LLDEATSALD+ +E+ +
Sbjct: 170 HDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAI 229
Query: 606 QEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIR 665
Q +L + RTT+V+AHRLST+ AD + V++ G + E G H+ L+++G GVYA + +
Sbjct: 230 QASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRG--GVYADMWQ 287
Query: 666 MQEAAHETA 674
+Q+ ET+
Sbjct: 288 LQQGQEETS 296
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 212 bits (539), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 136/449 (30%), Positives = 231/449 (51%), Gaps = 2/449 (0%)
Query: 204 TSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAV 263
TS ++ + D +Q+ + L + FV G + S +L+ V + ++P I +
Sbjct: 119 TSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVL 178
Query: 264 IGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRL 323
+ L K QE+ + +V + ++ +RVV AF E + + A + +R
Sbjct: 179 LFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRS 238
Query: 324 GYKSGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQ 383
+ L F+V +LW+GG LVR++ G +A +M +L
Sbjct: 239 IISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMM 298
Query: 384 AAPSISXXXXXXXXXXXIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEV 443
++ + +++ KP+I+ +++ L L +V G + ++V+F Y +
Sbjct: 299 IGNILNFIVRASASAKRVLEVLNEKPAIEE-ADNALALPNVEGSVSFENVEFRYFENTD- 356
Query: 444 RILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDIKSLKLRWLR 503
+L+ + +V G +A+ LI R DP G+V +D D++++KL+ LR
Sbjct: 357 PVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLR 416
Query: 504 QQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVGER 563
I V QE LF+ TIKEN+ GR DA +EI EAA++A + FII LP+G+D++V
Sbjct: 417 GHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERG 476
Query: 564 GVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAH 623
G SGGQKQR++IARA++K P +L+LD+ TS++D +EK + + L R+ G TT +I
Sbjct: 477 GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQ 536
Query: 624 RLSTIRKADVVAVLQQGSVSEIGTHDELI 652
++ T AD + VL +G V+ GTH EL+
Sbjct: 537 KIPTALLADKILVLHEGKVAGFGTHKELL 565
Score = 186 bits (471), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 131/490 (26%), Positives = 230/490 (46%), Gaps = 11/490 (2%)
Query: 823 FWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQV 882
F +N +R + VL I+ ++ S + RL D +++ + +++
Sbjct: 86 FASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSS--LITRLTNDVTQLQNLVMMLLRI 143
Query: 883 IVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQ 942
+V+ L + + +L+ VLI + P +V V ++ + + +
Sbjct: 144 VVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNR 203
Query: 943 LAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYAL 1002
+ E + VR V AF E F ++ R + + F +
Sbjct: 204 VVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIA 263
Query: 1003 GLWYSSWLVKHG---ISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLL 1059
LW+ LV++ I M +M S L ++ + + V ++L
Sbjct: 264 VLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNF---IVRASASAKRVLEVL 320
Query: 1060 DRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGP 1119
+ K IE D +A +P+ + G V ++V+F Y D P+ ++ + G +A++G
Sbjct: 321 NEKPAIEEAD-NALALPN-VEGSVSFENVEFRYFENTD-PVLSGVNFSVKPGSLVAVLGE 377
Query: 1120 SGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENI 1179
+G GKS+++ L+ R +P GRV +D D+R LK LR H++ VPQE LF+ TI EN+
Sbjct: 378 TGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENL 437
Query: 1180 AYGHXXXXXXXXXXXXRLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRK 1239
+G ++A FI SLP+GY + V G SGGQKQR++IARA V+K
Sbjct: 438 KWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKK 497
Query: 1240 AEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAE 1299
++++LD+ TS++D +E+ + + L R G TT ++ ++ T A I V+ +GKVA
Sbjct: 498 PKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAG 557
Query: 1300 LGSHSHLLKN 1309
G+H LL++
Sbjct: 558 FGTHKELLEH 567
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 204 bits (519), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 155/242 (64%), Gaps = 5/242 (2%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQ 486
++ +HVDF+Y + IL + S IA L+ERFY PT+G+
Sbjct: 1 MLSARHVDFAYDDSEQ--ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE 58
Query: 487 VLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLG-RPDADLNEIEEAARVANA 545
+ +DG I ++ L R QIG VSQ+ A+ A TI+EN+ G D ++ + +A A
Sbjct: 59 ITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFA 118
Query: 546 YSFIIKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLV 605
SF+ +PD +T+VGERGV++SGGQ+QR+AIARA L+NP IL+LDEAT++LDSESE +V
Sbjct: 119 RSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV 178
Query: 606 QEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIR 665
Q+ALD M GRTTLVIAHRLSTI AD + +++G ++ G H+EL+A + +YAK +
Sbjct: 179 QKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT--HPLYAKYVS 236
Query: 666 MQ 667
Q
Sbjct: 237 EQ 238
Score = 202 bits (515), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 103/238 (43%), Positives = 152/238 (63%), Gaps = 5/238 (2%)
Query: 1086 KHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMID 1145
+HVDF+Y I RD+S A+ +A GPSG GKS++ +L++RFY+P++G + ID
Sbjct: 5 RHVDFAYDDSEQI--LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITID 62
Query: 1146 GKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYG-HXXXXXXXXXXXXRLANADKFI 1204
G+ I +L++ R + V Q+ + A TI EN+ YG LA A F+
Sbjct: 63 GQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFV 122
Query: 1205 SSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEAL 1264
++PD T VGERGV++SGGQ+QR+AIARAF+R +I++LDEAT++LD+ESE VQ+AL
Sbjct: 123 ENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182
Query: 1265 DRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 1322
D G+TT+V+AHRLSTI +A I I+ G++ G H+ L+ +P YA+ + Q
Sbjct: 183 DSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHP--LYAKYVSEQ 238
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 201 bits (511), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 101/242 (41%), Positives = 152/242 (62%), Gaps = 4/242 (1%)
Query: 1082 EVELKHVDFSYPSRPDIPIFRD-LSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSG 1140
++ +++ F Y +PD P+ D ++L + G+ + +VG SG GKS++ L+QRFY P +G
Sbjct: 1 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 1141 RVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHXXXXXXXXXXXXRLANA 1200
+V+IDG D+ + LRR + +V Q+ L +I +NI+ + +LA A
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 1201 DKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSV 1260
FIS L +GY T VGE+G LSGGQ+QR+AIARA V +I++ DEATSALD ESE +
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 1261 QEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQ 1320
+ + C G+T I++AHRLST++NA I V++ GK+ E G H LL + P+ Y+ + Q
Sbjct: 179 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL-SEPESLYSYLYQ 237
Query: 1321 LQ 1322
LQ
Sbjct: 238 LQ 239
Score = 199 bits (505), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 157/241 (65%), Gaps = 4/241 (1%)
Query: 428 IELKHVDFSY-PSRPEVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQ 486
I +++ F Y P P IL+N +L++ G+ I + LI+RFY P +GQ
Sbjct: 2 ITFRNIRFRYKPDSPV--ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 487 VLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAY 546
VL+DGHD+ WLR+Q+G+V Q+ L +I +NI L P + ++ AA++A A+
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 547 SFIIKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQ 606
FI +L +G++T VGE+G LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE ++
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 607 EALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRM 666
+ + GRT ++IAHRLST++ AD + V+++G + E G H EL+++ E+ +Y+ L ++
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPES-LYSYLYQL 238
Query: 667 Q 667
Q
Sbjct: 239 Q 239
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound
State
Length = 247
Score = 201 bits (511), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 101/242 (41%), Positives = 152/242 (62%), Gaps = 4/242 (1%)
Query: 1082 EVELKHVDFSYPSRPDIPIFRD-LSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSG 1140
++ +++ F Y +PD P+ D ++L + G+ + +VG SG GKS++ L+QRFY P +G
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 1141 RVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHXXXXXXXXXXXXRLANA 1200
+V+IDG D+ + LRR + +V Q+ L +I +NI+ + +LA A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 1201 DKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSV 1260
FIS L +GY T VGE+G LSGGQ+QR+AIARA V +I++ DEATSALD ESE +
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 1261 QEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQ 1320
+ + C G+T I++AHRLST++NA I V++ GK+ E G H LL + P+ Y+ + Q
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL-SEPESLYSYLYQ 243
Query: 1321 LQ 1322
LQ
Sbjct: 244 LQ 245
Score = 199 bits (505), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 157/241 (65%), Gaps = 4/241 (1%)
Query: 428 IELKHVDFSY-PSRPEVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQ 486
I +++ F Y P P IL+N +L++ G+ I + LI+RFY P +GQ
Sbjct: 8 ITFRNIRFRYKPDSPV--ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 487 VLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAY 546
VL+DGHD+ WLR+Q+G+V Q+ L +I +NI L P + ++ AA++A A+
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 125
Query: 547 SFIIKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQ 606
FI +L +G++T VGE+G LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE ++
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 607 EALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRM 666
+ + GRT ++IAHRLST++ AD + V+++G + E G H EL+++ E+ +Y+ L ++
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPES-LYSYLYQL 244
Query: 667 Q 667
Q
Sbjct: 245 Q 245
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With
Tnp-Adp
Length = 243
Score = 200 bits (509), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 101/242 (41%), Positives = 152/242 (62%), Gaps = 4/242 (1%)
Query: 1082 EVELKHVDFSYPSRPDIPIFRD-LSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSG 1140
++ +++ F Y +PD P+ D ++L + G+ + +VG SG GKS++ L+QRFY P +G
Sbjct: 3 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 60
Query: 1141 RVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHXXXXXXXXXXXXRLANA 1200
+V+IDG D+ + LRR + +V Q+ L +I +NI+ + +LA A
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 1201 DKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSV 1260
FIS L +GY T VGE+G LSGGQ+QR+AIARA V +I++ DEATSALD ESE +
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 1261 QEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQ 1320
+ + C G+T I++AHRLST++NA I V++ GK+ E G H LL + P+ Y+ + Q
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL-SEPESLYSYLYQ 239
Query: 1321 LQ 1322
LQ
Sbjct: 240 LQ 241
Score = 199 bits (505), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 157/241 (65%), Gaps = 4/241 (1%)
Query: 428 IELKHVDFSY-PSRPEVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQ 486
I +++ F Y P P IL+N +L++ G+ I + LI+RFY P +GQ
Sbjct: 4 ITFRNIRFRYKPDSPV--ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 61
Query: 487 VLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAY 546
VL+DGHD+ WLR+Q+G+V Q+ L +I +NI L P + ++ AA++A A+
Sbjct: 62 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 121
Query: 547 SFIIKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQ 606
FI +L +G++T VGE+G LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE ++
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 607 EALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRM 666
+ + GRT ++IAHRLST++ AD + V+++G + E G H EL+++ E+ +Y+ L ++
Sbjct: 182 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPES-LYSYLYQL 240
Query: 667 Q 667
Q
Sbjct: 241 Q 241
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 199 bits (507), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 100/242 (41%), Positives = 152/242 (62%), Gaps = 4/242 (1%)
Query: 1082 EVELKHVDFSYPSRPDIPIFRD-LSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSG 1140
++ +++ F Y +PD P+ D ++L + G+ + +VG SG GKS++ L+QRFY P +G
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 1141 RVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHXXXXXXXXXXXXRLANA 1200
+V+IDG D+ + LRR + +V Q+ L +I +NI+ + +LA A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 1201 DKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSV 1260
FIS L +GY T VGE+G LSGGQ+QR+AIARA V +I++ D+ATSALD ESE +
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVI 184
Query: 1261 QEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQ 1320
+ + C G+T I++AHRLST++NA I V++ GK+ E G H LL + P+ Y+ + Q
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL-SEPESLYSYLYQ 243
Query: 1321 LQ 1322
LQ
Sbjct: 244 LQ 245
Score = 197 bits (502), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 157/241 (65%), Gaps = 4/241 (1%)
Query: 428 IELKHVDFSY-PSRPEVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQ 486
I +++ F Y P P IL+N +L++ G+ I + LI+RFY P +GQ
Sbjct: 8 ITFRNIRFRYKPDSPV--ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 487 VLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAY 546
VL+DGHD+ WLR+Q+G+V Q+ L +I +NI L P + ++ AA++A A+
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 125
Query: 547 SFIIKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQ 606
FI +L +G++T VGE+G LSGGQ+QRIAIARA++ NP IL+ D+ATSALD ESE ++
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIM 185
Query: 607 EALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRM 666
+ + GRT ++IAHRLST++ AD + V+++G + E G H EL+++ E+ +Y+ L ++
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPES-LYSYLYQL 244
Query: 667 Q 667
Q
Sbjct: 245 Q 245
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 199 bits (506), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 100/242 (41%), Positives = 152/242 (62%), Gaps = 4/242 (1%)
Query: 1082 EVELKHVDFSYPSRPDIPIFRD-LSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSG 1140
++ +++ F Y +PD P+ D ++L + G+ + +VG +G GKS++ L+QRFY P +G
Sbjct: 3 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENG 60
Query: 1141 RVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHXXXXXXXXXXXXRLANA 1200
+V+IDG D+ + LRR + +V Q+ L +I +NI+ + +LA A
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 1201 DKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSV 1260
FIS L +GY T VGE+G LSGGQ+QR+AIARA V +I++ DEATSALD ESE +
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 1261 QEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQ 1320
+ + C G+T I++AHRLST++NA I V++ GK+ E G H LL + P+ Y+ + Q
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL-SEPESLYSYLYQ 239
Query: 1321 LQ 1322
LQ
Sbjct: 240 LQ 241
Score = 199 bits (505), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 157/241 (65%), Gaps = 4/241 (1%)
Query: 428 IELKHVDFSY-PSRPEVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQ 486
I +++ F Y P P IL+N +L++ G+ I + LI+RFY P +GQ
Sbjct: 4 ITFRNIRFRYKPDSPV--ILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQ 61
Query: 487 VLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAY 546
VL+DGHD+ WLR+Q+G+V Q+ L +I +NI L P + ++ AA++A A+
Sbjct: 62 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 121
Query: 547 SFIIKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQ 606
FI +L +G++T VGE+G LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE ++
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 607 EALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRM 666
+ + GRT ++IAHRLST++ AD + V+++G + E G H EL+++ E+ +Y+ L ++
Sbjct: 182 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPES-LYSYLYQL 240
Query: 667 Q 667
Q
Sbjct: 241 Q 241
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 197 bits (500), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 100/242 (41%), Positives = 151/242 (62%), Gaps = 4/242 (1%)
Query: 1082 EVELKHVDFSYPSRPDIPIFRD-LSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSG 1140
++ +++ F Y +PD P+ D ++L + G+ + +VG SG GKS++ L+QRFY P +G
Sbjct: 1 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 1141 RVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHXXXXXXXXXXXXRLANA 1200
+V+IDG D+ + LRR + +V Q+ L +I +NI+ + +LA A
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 1201 DKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSV 1260
FIS L +GY T VGE+G LSGGQ+QR+AIARA V +I++ DEATSALD ESE +
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 1261 QEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQ 1320
+ + C G+T I++A RLST++NA I V++ GK+ E G H LL + P+ Y+ + Q
Sbjct: 179 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELL-SEPESLYSYLYQ 237
Query: 1321 LQ 1322
LQ
Sbjct: 238 LQ 239
Score = 194 bits (494), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 156/241 (64%), Gaps = 4/241 (1%)
Query: 428 IELKHVDFSY-PSRPEVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQ 486
I +++ F Y P P IL+N +L++ G+ I + LI+RFY P +GQ
Sbjct: 2 ITFRNIRFRYKPDSPV--ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 487 VLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAY 546
VL+DGHD+ WLR+Q+G+V Q+ L +I +NI L P + ++ AA++A A+
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 547 SFIIKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQ 606
FI +L +G++T VGE+G LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE ++
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 607 EALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRM 666
+ + GRT ++IA RLST++ AD + V+++G + E G H EL+++ E+ +Y+ L ++
Sbjct: 180 RNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPES-LYSYLYQL 238
Query: 667 Q 667
Q
Sbjct: 239 Q 239
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter
Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 197 bits (500), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 100/242 (41%), Positives = 151/242 (62%), Gaps = 4/242 (1%)
Query: 1082 EVELKHVDFSYPSRPDIPIFRD-LSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSG 1140
++ +++ F Y +PD P+ D ++L + G+ + +VG SG GKS++ L+QRFY P +G
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 1141 RVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHXXXXXXXXXXXXRLANA 1200
+V+IDG D+ + LRR + +V Q+ L +I +NI+ + +LA A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 1201 DKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSV 1260
FIS L +GY T VGE+G LSGGQ+QR+AIARA V +I++ DEATSALD ESE +
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 1261 QEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQ 1320
+ + C G+T I++A RLST++NA I V++ GK+ E G H LL + P+ Y+ + Q
Sbjct: 185 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELL-SEPESLYSYLYQ 243
Query: 1321 LQ 1322
LQ
Sbjct: 244 LQ 245
Score = 194 bits (494), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 156/241 (64%), Gaps = 4/241 (1%)
Query: 428 IELKHVDFSY-PSRPEVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQ 486
I +++ F Y P P IL+N +L++ G+ I + LI+RFY P +GQ
Sbjct: 8 ITFRNIRFRYKPDSPV--ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 487 VLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAY 546
VL+DGHD+ WLR+Q+G+V Q+ L +I +NI L P + ++ AA++A A+
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 125
Query: 547 SFIIKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQ 606
FI +L +G++T VGE+G LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE ++
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 607 EALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRM 666
+ + GRT ++IA RLST++ AD + V+++G + E G H EL+++ E+ +Y+ L ++
Sbjct: 186 RNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPES-LYSYLYQL 244
Query: 667 Q 667
Q
Sbjct: 245 Q 245
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 195 bits (495), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/248 (40%), Positives = 150/248 (60%), Gaps = 5/248 (2%)
Query: 1076 PDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFY 1135
P ++G V+ + V F+YP+ P++ + + L+ GK ALVGP+G GKS+V AL+Q Y
Sbjct: 10 PLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69
Query: 1136 EPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHXXXXXXXXXXXX 1195
+P+ G+V++DG+ + +Y+ L +A V QEP LF + ENIAYG
Sbjct: 70 QPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAV 129
Query: 1196 RL-ANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDA 1254
+ + A FIS P GY T VGE G QLSGGQ+Q VA+ARA +RK +++LD+ATSALDA
Sbjct: 130 AMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDA 189
Query: 1255 ESERSVQEALDRAC--SGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPD 1312
++ VQ L + + +T +++ H+LS AH I + +G V E G+H L++
Sbjct: 190 GNQLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERG-- 247
Query: 1313 GCYARMIQ 1320
GCY M++
Sbjct: 248 GCYRSMVE 255
Score = 174 bits (440), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 141/245 (57%), Gaps = 5/245 (2%)
Query: 423 SVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDP 482
++ GL++ + V F+YP+ P V++L + T+ GK AL L++ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 483 TSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRP-DADLNEIEEAAR 541
T G+VLLDG + +L Q+ V QEP LF + +ENI G + EI A
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 542 VANAYSFIIKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSES 601
+ A+ FI P G+DT+VGE G QLSGGQ+Q +A+ARA+++ P +L+LD+ATSALD+ +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGN 191
Query: 602 EKLVQEAL--DRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGV 659
+ VQ L RT L+I H+LS +A + L++GSV E GTH +L+ +G G
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERG--GC 249
Query: 660 YAKLI 664
Y ++
Sbjct: 250 YRSMV 254
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 194 bits (493), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 101/254 (39%), Positives = 152/254 (59%), Gaps = 5/254 (1%)
Query: 1070 PDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIA 1129
P P L G V+ + V F+YP+RPD+ + + L+ R G+ ALVGP+G GKS+V A
Sbjct: 2 PSGLLTPLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAA 61
Query: 1130 LVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHXXXXXX 1189
L+Q Y+P+ G++++DGK + +Y + L R +A V QEP +F ++ ENIAYG
Sbjct: 62 LLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTM 121
Query: 1190 XXXXXXRL-ANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEA 1248
+ + A FIS LP GY T V E G QLSGGQ+Q VA+ARA +RK +++LD+A
Sbjct: 122 EEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDA 181
Query: 1249 TSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHL 1306
TSALDA S+ V++ L + ++ +++ LS + A I ++ G + E G+H L
Sbjct: 182 TSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQL 241
Query: 1307 LKNNPDGCYARMIQ 1320
++ GCY M+Q
Sbjct: 242 MEKK--GCYWAMVQ 253
Score = 182 bits (462), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/254 (38%), Positives = 153/254 (60%), Gaps = 9/254 (3%)
Query: 424 VSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPT 483
+ GL++ + V F+YP+RP+V +L + T+ G+ AL L++ Y PT
Sbjct: 11 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 70
Query: 484 SGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLG-RPDADLNEIEEAARV 542
GQ+LLDG + + R+L +Q+ V QEP +F +++ENI G + EI AA
Sbjct: 71 GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 130
Query: 543 ANAYSFIIKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSES- 601
+ A+SFI LP G+DT+V E G QLSGGQ+Q +A+ARA+++ P +L+LD+ATSALD+ S
Sbjct: 131 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 190
Query: 602 ---EKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENG 658
E+L+ E+ +R+ R+ L+I LS + +AD + L+ G++ E GTH +L+ K G
Sbjct: 191 LQVEQLLYESPERY--SRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK--KG 246
Query: 659 VYAKLIRMQEAAHE 672
Y +++ A E
Sbjct: 247 CYWAMVQAPADAPE 260
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 191 bits (485), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 99/248 (39%), Positives = 148/248 (59%), Gaps = 5/248 (2%)
Query: 1076 PDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFY 1135
P ++G V+ + V F+YP+ P++ + + L+ GK ALVGP+G GKS+V AL+Q Y
Sbjct: 10 PLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69
Query: 1136 EPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHXXXXXXXXXXXX 1195
+P+ G+V++DG+ + +Y+ L +A V QEP LF + ENIAYG
Sbjct: 70 QPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAV 129
Query: 1196 RL-ANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDA 1254
+ + A FIS P GY T VGE G QLSGGQ+Q VA+ARA +RK +++LD ATSALDA
Sbjct: 130 AMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDA 189
Query: 1255 ESERSVQEALDRAC--SGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPD 1312
++ VQ L + + +T +++ +LS AH I + +G V E G+H L++
Sbjct: 190 GNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERG-- 247
Query: 1313 GCYARMIQ 1320
GCY M++
Sbjct: 248 GCYRSMVE 255
Score = 170 bits (430), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 139/245 (56%), Gaps = 5/245 (2%)
Query: 423 SVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDP 482
++ GL++ + V F+YP+ P V++L + T+ GK AL L++ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 483 TSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRP-DADLNEIEEAAR 541
T G+VLLDG + +L Q+ V QEP LF + +ENI G + EI A
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 542 VANAYSFIIKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSES 601
+ A+ FI P G+DT+VGE G QLSGGQ+Q +A+ARA+++ P +L+LD ATSALD+ +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 602 EKLVQEAL--DRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGV 659
+ VQ L RT L+I +LS +A + L++GSV E GTH +L+ +G G
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERG--GC 249
Query: 660 YAKLI 664
Y ++
Sbjct: 250 YRSMV 254
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 191 bits (484), Expect = 3e-48, Method: Composition-based stats.
Identities = 101/245 (41%), Positives = 148/245 (60%), Gaps = 3/245 (1%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQV 487
IE V+FSYP + R L + + +P+G T AL L+ RFYD G +
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-AEGDI 76
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYS 547
+ G ++ +R IG+V Q+ LF TIK NIL G+ DA E+ +A + A Y
Sbjct: 77 KIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYD 136
Query: 548 FIIKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQE 607
FI LP +DT VG +G++LSGG++QRIAIAR +LK+P I++ DEATS+LDS++E L Q+
Sbjct: 137 FIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQK 196
Query: 608 ALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQ 667
A++ RT ++IAHRLSTI A+ + +L +G + E GTH +L+ NG YA++ MQ
Sbjct: 197 AVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL--NGEYAEMWNMQ 254
Query: 668 EAAHE 672
++
Sbjct: 255 SGGND 259
Score = 184 bits (468), Expect = 2e-46, Method: Composition-based stats.
Identities = 96/240 (40%), Positives = 147/240 (61%), Gaps = 3/240 (1%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+E V+FSYP + + + ++ +G T ALVG +G GKS++ L+ RFY+ + G +
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-AEGDI 76
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHXXXXXXXXXXXXRLANADK 1202
I GK++ KYN S+R + IVPQ+ LF TI NI YG + A
Sbjct: 77 KIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYD 136
Query: 1203 FISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQE 1262
FI +LP + T VG +G++LSGG++QR+AIAR ++ +I++ DEATS+LD+++E Q+
Sbjct: 137 FIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQK 196
Query: 1263 ALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 1322
A++ +T I++AHRLSTI +A I +++ GK+ E G+H LLK N G YA M +Q
Sbjct: 197 AVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLN--GEYAEMWNMQ 254
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 186 bits (472), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 147/248 (59%), Gaps = 5/248 (2%)
Query: 1076 PDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFY 1135
P ++G V+ + V F+YP+ P++ + + L+ GK ALVGP+G GKS+V AL+Q Y
Sbjct: 10 PLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69
Query: 1136 EPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHXXXXXXXXXXXX 1195
+P+ G+V++DG+ + +Y+ L +A V QEP LF + ENIAYG
Sbjct: 70 QPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAV 129
Query: 1196 RL-ANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDA 1254
+ + A FIS P GY T VGE G QL+ GQ+Q VA+ARA +RK +++LD ATSALDA
Sbjct: 130 AMESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDA 189
Query: 1255 ESERSVQEALDRAC--SGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPD 1312
++ VQ L + + +T +++ +LS AH I + +G V E G+H L++
Sbjct: 190 GNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERG-- 247
Query: 1313 GCYARMIQ 1320
GCY M++
Sbjct: 248 GCYRSMVE 255
Score = 165 bits (417), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 138/245 (56%), Gaps = 5/245 (2%)
Query: 423 SVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDP 482
++ GL++ + V F+YP+ P V++L + T+ GK AL L++ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 483 TSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLG-RPDADLNEIEEAAR 541
T G+VLLDG + +L Q+ V QEP LF + +ENI G + EI A
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 542 VANAYSFIIKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSES 601
+ A+ FI P G+DT+VGE G QL+ GQ+Q +A+ARA+++ P +L+LD ATSALD+ +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 602 EKLVQEAL--DRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGV 659
+ VQ L RT L+I +LS +A + L++GSV E GTH +L+ +G G
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERG--GC 249
Query: 660 YAKLI 664
Y ++
Sbjct: 250 YRSMV 254
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 120/241 (49%), Gaps = 20/241 (8%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+ +++ F++ +R D P ++ G +A+VG GCGKSS+++ + + G V
Sbjct: 4 ITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHXXXXXXXXXXXXRLANADK 1202
I G +A VPQ+ + ++ ENI +G A
Sbjct: 63 AIKGS-------------VAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPD 109
Query: 1203 FISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQE 1262
+ LP G +T +GE+GV LSGGQKQRV++ARA A+I L D+ SA+DA + + E
Sbjct: 110 -LEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFE 168
Query: 1263 AL---DRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMI 1319
+ KT I+V H +S + VI V+ GK++E+GS+ LL DG +A +
Sbjct: 169 NVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR--DGAFAEFL 226
Query: 1320 Q 1320
+
Sbjct: 227 R 227
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 123/246 (50%), Gaps = 30/246 (12%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQV 487
I +++ F++ +R + LN + ++P G +A+ + D G V
Sbjct: 4 ITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEA--ARVANA 545
+ G + V Q+ + +++ENIL G ++EE V A
Sbjct: 63 AIKG-------------SVAYVPQQAWIQNDSLRENILFG------CQLEEPYYRSVIQA 103
Query: 546 YSFIIKL---PDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESE 602
+ + L P G T++GE+GV LSGGQKQR+++ARA+ N I L D+ SA+D+
Sbjct: 104 CALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVG 163
Query: 603 KLVQEAL---DRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGV 659
K + E + + +T +++ H +S + + DV+ V+ G +SE+G++ EL+A+ +G
Sbjct: 164 KHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR--DGA 221
Query: 660 YAKLIR 665
+A+ +R
Sbjct: 222 FAEFLR 227
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 104 bits (259), Expect = 4e-22, Method: Composition-based stats.
Identities = 70/210 (33%), Positives = 115/210 (54%), Gaps = 23/210 (10%)
Query: 1103 DLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162
+++L+ + G+ +AL+GPSG GKS+++ + Y+P+SG++ D KD+ + K R++
Sbjct: 21 NINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD--RNVG 78
Query: 1163 IVPQEPCLFAS-TIYENIAY------GHXXXXXXXXXXXXRLANADKFISSLPDGYKTFV 1215
+V Q L+ T+Y+NIA+ ++ + DK ++ P
Sbjct: 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP------- 131
Query: 1216 GERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTT 1273
QLSGGQ+QRVAIARA V++ E++LLDE S LDA V+ L R G TT
Sbjct: 132 ----WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITT 187
Query: 1274 IVVAH-RLSTIRNAHVIAVIDDGKVAELGS 1302
+ V H + + A IAVI +G++ ++G+
Sbjct: 188 VYVTHDQAEALAMADRIAVIREGEILQVGT 217
Score = 96.7 bits (239), Expect = 8e-20, Method: Composition-based stats.
Identities = 73/215 (33%), Positives = 110/215 (51%), Gaps = 15/215 (6%)
Query: 446 LNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQ 505
LNN +L + G+ +AL I Y PTSG++ D D+ L + +
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRN 76
Query: 506 IGLVSQEPALFA-TTIKENIL--LGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVGE 562
+GLV Q AL+ T+ +NI L A EI++ R I KL + + Q
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQ--- 133
Query: 563 RGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLV 620
LSGGQ+QR+AIARA++K P +LLLDE S LD+ V+ L R +G TT+
Sbjct: 134 ----LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVY 189
Query: 621 IAH-RLSTIRKADVVAVLQQGSVSEIGTHDELIAK 654
+ H + + AD +AV+++G + ++GT DE+ K
Sbjct: 190 VTHDQAEALAMADRIAVIREGEILQVGTPDEVYYK 224
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 116/230 (50%), Gaps = 12/230 (5%)
Query: 443 VRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDIKSL---KL 499
++ LNN SL VPAG+ + + PT G VL+DG ++ +L +L
Sbjct: 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 77
Query: 500 RWLRQQIGLVSQEPALFAT-TIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDT 558
R+QIG++ Q L ++ T+ N+ L + D +E R ++ L D D+
Sbjct: 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPL-ELDNTPKDEVKRRVTELLSLVGLGDKHDS 136
Query: 559 QVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRF--MIGR 616
LSGGQKQR+AIARA+ NP +LL DEATSALD + + + E L +G
Sbjct: 137 YPS----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGL 192
Query: 617 TTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIR 665
T L+I H + +++ D VAV+ G + E T E+ + + + K I+
Sbjct: 193 TILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQ 242
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 113/230 (49%), Gaps = 12/230 (5%)
Query: 1098 IPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDI---RKYNL 1154
I ++SL AG+ ++G SG GKS++I V P+ G V++DG+++ + L
Sbjct: 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 77
Query: 1155 KSLRRHMAIVPQEPCLFAS-TIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKT 1213
RR + ++ Q L +S T++ N+A R+ + L D + +
Sbjct: 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVG-LGDKHDS 136
Query: 1214 FVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GK 1271
+ LSGGQKQRVAIARA +++L DEATSALD + RS+ E L G
Sbjct: 137 YPS----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGL 192
Query: 1272 TTIVVAHRLSTI-RNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQ 1320
T +++ H + + R +AVI +G++ E + S + + + IQ
Sbjct: 193 TILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQ 242
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 119/239 (49%), Gaps = 18/239 (7%)
Query: 1103 DLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162
+LSL+ +G+ ++GP+G GK+ + L+ F+ P SGR+++DGKD+ +L + +A
Sbjct: 18 NLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDV--TDLSPEKHDIA 75
Query: 1163 IVPQEPCLFAS-TIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPD-GYKTFVGERGV 1220
V Q LF + +N+ +G ++ + + + + D + + +
Sbjct: 76 FVYQNYSLFPHMNVKKNLEFG---------MRMKKIKDPKRVLDTARDLKIEHLLDRNPL 126
Query: 1221 QLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRL 1280
LSGG++QRVA+ARA V +I+LLDE SALD ++ + +E L K + V H
Sbjct: 127 TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLS-VLHKKNKLTVLHIT 185
Query: 1281 STIRNAHV----IAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQVIGMTSG 1335
A + IAV+ DGK+ ++G + + +G A + + +VI G
Sbjct: 186 HDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVASFVGFENVLKGRVISAEQG 244
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 111/223 (49%), Gaps = 14/223 (6%)
Query: 446 LNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQ 505
L+N SL V +G+ + LI F+ P SG++LLDG D+ L +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHD 73
Query: 506 IGLVSQEPALFA-TTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVGERG 564
I V Q +LF +K+N+ G + +I++ RV + + +K+ D
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFG---MRMKKIKDPKRVLDT-ARDLKIEHLLDRN----P 125
Query: 565 VQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGR--TTLVIA 622
+ LSGG++QR+A+ARA++ NP ILLLDE SALD +++ +E L T L I
Sbjct: 126 LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHIT 185
Query: 623 HRLSTIR-KADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLI 664
H + R AD +AV+ G + ++G +E+ K G A +
Sbjct: 186 HDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVASFV 228
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 100 bits (250), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 116/230 (50%), Gaps = 12/230 (5%)
Query: 443 VRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDIKSL---KL 499
++ LNN SL VPAG+ + + PT G VL+DG ++ +L +L
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100
Query: 500 RWLRQQIGLVSQEPALFAT-TIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDT 558
R+QIG++ Q L ++ T+ N+ L + D +E R ++ L D D+
Sbjct: 101 TKARRQIGMIFQHFNLLSSRTVFGNVALPL-ELDNTPKDEVKRRVTELLSLVGLGDKHDS 159
Query: 559 QVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRF--MIGR 616
LSGGQKQR+AIARA+ NP +LL D+ATSALD + + + E L +G
Sbjct: 160 YPS----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGL 215
Query: 617 TTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIR 665
T L+I H + +++ D VAV+ G + E T E+ + + + K I+
Sbjct: 216 TILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQ 265
Score = 94.0 bits (232), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 113/230 (49%), Gaps = 12/230 (5%)
Query: 1098 IPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDI---RKYNL 1154
I ++SL AG+ ++G SG GKS++I V P+ G V++DG+++ + L
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100
Query: 1155 KSLRRHMAIVPQEPCLFAS-TIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKT 1213
RR + ++ Q L +S T++ N+A R+ + L D + +
Sbjct: 101 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVG-LGDKHDS 159
Query: 1214 FVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GK 1271
+ LSGGQKQRVAIARA +++L D+ATSALD + RS+ E L G
Sbjct: 160 YPS----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGL 215
Query: 1272 TTIVVAHRLSTI-RNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQ 1320
T +++ H + + R +AVI +G++ E + S + + + IQ
Sbjct: 216 TILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQ 265
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 97.8 bits (242), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 114/230 (49%), Gaps = 12/230 (5%)
Query: 443 VRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDIKSL---KL 499
++ LNN SL VPAG+ + + PT G VL+DG ++ +L +L
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100
Query: 500 RWLRQQIGLVSQEPALFAT-TIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDT 558
R+QIG + Q L ++ T+ N+ L + D +E R ++ L D D+
Sbjct: 101 TKARRQIGXIFQHFNLLSSRTVFGNVALPL-ELDNTPKDEVKRRVTELLSLVGLGDKHDS 159
Query: 559 QVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRF--MIGR 616
LSGGQKQR+AIARA+ NP +LL D+ATSALD + + + E L +G
Sbjct: 160 YPS----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGL 215
Query: 617 TTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIR 665
T L+I H +++ D VAV+ G + E T E+ + + + K I+
Sbjct: 216 TILLITHEXDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQ 265
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 111/230 (48%), Gaps = 12/230 (5%)
Query: 1098 IPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDI---RKYNL 1154
I ++SL AG+ ++G SG GKS++I V P+ G V++DG+++ + L
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100
Query: 1155 KSLRRHMAIVPQEPCLFAS-TIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKT 1213
RR + + Q L +S T++ N+A R+ + L D + +
Sbjct: 101 TKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVG-LGDKHDS 159
Query: 1214 FVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GK 1271
+ LSGGQKQRVAIARA +++L D+ATSALD + RS+ E L G
Sbjct: 160 YPS----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGL 215
Query: 1272 TTIVVAHRLSTI-RNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQ 1320
T +++ H + R +AVI +G++ E + S + + + IQ
Sbjct: 216 TILLITHEXDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQ 265
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 113/224 (50%), Gaps = 21/224 (9%)
Query: 1102 RDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDI----RKYNLKSL 1157
R++SL + G+ + L+GPSGCGK++ + ++ EPS G++ I K + + +
Sbjct: 20 REMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79
Query: 1158 RRHMAIVPQEPCLFAS-TIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKTFVG 1216
R +A+V Q L+ T+Y+NIA+ R+ + + G +
Sbjct: 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELL-----GLTELLN 134
Query: 1217 ERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTI 1274
+ +LSGGQ+QRVA+ RA VRK ++ L+DE S LDA+ ++ L + G TTI
Sbjct: 135 RKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTI 194
Query: 1275 VVAH-RLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYAR 1317
V H ++ + IAV++ G + ++GS PD Y +
Sbjct: 195 YVTHDQVEAMTMGDRIAVMNRGVLQQVGS--------PDEVYDK 230
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 105/231 (45%), Gaps = 13/231 (5%)
Query: 442 EVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDI----KSL 497
EV + SL V G+ + L +I +P+ GQ+ + + K +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGI 74
Query: 498 KLRWLRQQIGLVSQEPALFA-TTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGF 556
+ + I +V Q AL+ T+ +NI + E RV + G
Sbjct: 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELL-----GL 129
Query: 557 DTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRF--MI 614
+ + +LSGGQ+QR+A+ RA+++ P + L+DE S LD++ ++ L + +
Sbjct: 130 TELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL 189
Query: 615 GRTTLVIAH-RLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLI 664
G TT+ + H ++ + D +AV+ +G + ++G+ DE+ K N A I
Sbjct: 190 GVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAGFI 240
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 92.0 bits (227), Expect = 2e-18, Method: Composition-based stats.
Identities = 67/231 (29%), Positives = 115/231 (49%), Gaps = 16/231 (6%)
Query: 1081 GEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSG 1140
G E+K ++ + D+ +DLSL + G+ L L+GPSGCGK++ + + EP+ G
Sbjct: 3 GXAEVKLINI-WKRFGDVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRG 61
Query: 1141 RVMIDGKDI----RKYNLKSLRRHMAIVPQEPCLFA-STIYENIAYGHXXXXXXXXXXXX 1195
++ I+ + + + R +A V Q L+ T+Y+NIA+
Sbjct: 62 QIYIEDNLVADPEKGVFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDK 121
Query: 1196 RLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAE 1255
R+ + + G + + +LSGGQ+QRVA+ RA +R+ ++ L DE S LDA+
Sbjct: 122 RVREVAEXL-----GLTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAK 176
Query: 1256 ---SERSVQEALDRACSGKTTIVVAH-RLSTIRNAHVIAVIDDGKVAELGS 1302
R+ + L R G TTI V H ++ IAV + G++ ++G+
Sbjct: 177 LRVKXRAELKKLQRQL-GVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGT 226
Score = 67.0 bits (162), Expect = 7e-11, Method: Composition-based stats.
Identities = 56/231 (24%), Positives = 103/231 (44%), Gaps = 13/231 (5%)
Query: 442 EVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDI----KSL 497
+V + + SL + G+ + L I +PT GQ+ ++ + + K +
Sbjct: 18 DVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGV 77
Query: 498 KLRWLRQQIGLVSQEPALFA-TTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGF 556
+ + + V Q AL+ T+ +NI + + E RV + G
Sbjct: 78 FVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXL-----GL 132
Query: 557 DTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRF--MI 614
+ + +LSGGQ+QR+A+ RA+++ P + L DE S LD++ + L + +
Sbjct: 133 TELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQL 192
Query: 615 GRTTLVIAH-RLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLI 664
G TT+ + H ++ D +AV +G + ++GT DE+ K N A I
Sbjct: 193 GVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEVYYKPVNTFVAGFI 243
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 116/224 (51%), Gaps = 15/224 (6%)
Query: 1097 DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDI--RKYNL 1154
+ P+ D+SL G+ L ++G SGCGK++++ + F +P SG + + GK I + NL
Sbjct: 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNL 75
Query: 1155 KSLRRHMAIVPQEPCLFAS-TIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPD--GY 1211
R + + QE LF T+Y NIAYG R A + I ++ + G
Sbjct: 76 PVRERRLGYLVQEGVLFPHLTVYRNIAYG-------LGNGKGRTAQERQRIEAMLELTGI 128
Query: 1212 KTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRA--CS 1269
G +LSGGQ+QR A+ARA E++LLDE SALD + R ++E + A +
Sbjct: 129 SELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRAN 188
Query: 1270 GKTTIVVAH-RLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPD 1312
GK+ + V+H R ++ A IAV+ G++ + S L + D
Sbjct: 189 GKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPAD 232
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 112/230 (48%), Gaps = 14/230 (6%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQV 487
+ + H+ S+ + P +LN+ SL++ G+ + + + F P SG++
Sbjct: 5 LHIGHLSKSFQNTP---VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 488 LLDGHDI--KSLKLRWLRQQIGLVSQEPALFA-TTIKENILLGRPDADLNEIEEAARVAN 544
L G I K+ L +++G + QE LF T+ NI G + +E R+
Sbjct: 62 SLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEA 121
Query: 545 AYSFIIKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKL 604
G G +LSGGQ+QR A+ARA+ +P ++LLDE SALD + +
Sbjct: 122 MLELT-----GISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQ 176
Query: 605 VQEALDRFM--IGRTTLVIAH-RLSTIRKADVVAVLQQGSVSEIGTHDEL 651
++E + + G++ + ++H R ++ AD +AV++QG + + + EL
Sbjct: 177 IREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar
Transporter From Pyrococcus Horikoshii Ot3 Complexed With
Atp
Length = 373
Score = 91.7 bits (226), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 111/207 (53%), Gaps = 11/207 (5%)
Query: 1104 LSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAI 1163
L+L + G+ L L+GPSGCGK++ + ++ EP+ GR+ +D+ K R++++
Sbjct: 31 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD--RNISM 88
Query: 1164 VPQEPCLFAS-TIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKTFVGERGVQL 1222
V Q ++ T+YENIA+ R+ A + + + + QL
Sbjct: 89 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQ-----IEELLNRYPAQL 143
Query: 1223 SGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAH-R 1279
SGGQ+QRVA+ARA V + +++L+DE S LDA+ +++ + + TTI V H +
Sbjct: 144 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ 203
Query: 1280 LSTIRNAHVIAVIDDGKVAELGSHSHL 1306
+ + IAV++ G++ ++GS + +
Sbjct: 204 VEAMTMGDRIAVMNRGQLLQIGSPTEV 230
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 104/212 (49%), Gaps = 15/212 (7%)
Query: 446 LNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQ 505
+N +LT+ G+ + L +I +PT G++ D+ L + +
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRN 85
Query: 506 IGLVSQEPALFA-TTIKENIL--LGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVGE 562
I +V Q A++ T+ ENI L +EI++ R A I +L + + Q
Sbjct: 86 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ--- 142
Query: 563 RGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLV 620
LSGGQ+QR+A+ARA++ P +LL+DE S LD++ ++ + + + TT+
Sbjct: 143 ----LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIY 198
Query: 621 IAH-RLSTIRKADVVAVLQQGSVSEIGTHDEL 651
+ H ++ + D +AV+ +G + +IG+ E+
Sbjct: 199 VTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 230
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter
Length = 372
Score = 91.7 bits (226), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 111/207 (53%), Gaps = 11/207 (5%)
Query: 1104 LSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAI 1163
L+L + G+ L L+GPSGCGK++ + ++ EP+ GR+ +D+ K R++++
Sbjct: 30 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD--RNISM 87
Query: 1164 VPQEPCLFAS-TIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKTFVGERGVQL 1222
V Q ++ T+YENIA+ R+ A + + + + QL
Sbjct: 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQ-----IEELLNRYPAQL 142
Query: 1223 SGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAH-R 1279
SGGQ+QRVA+ARA V + +++L+DE S LDA+ +++ + + TTI V H +
Sbjct: 143 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ 202
Query: 1280 LSTIRNAHVIAVIDDGKVAELGSHSHL 1306
+ + IAV++ G++ ++GS + +
Sbjct: 203 VEAMTMGDRIAVMNRGQLLQIGSPTEV 229
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 104/212 (49%), Gaps = 15/212 (7%)
Query: 446 LNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQ 505
+N +LT+ G+ + L +I +PT G++ D+ L + +
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRN 84
Query: 506 IGLVSQEPALFA-TTIKENIL--LGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVGE 562
I +V Q A++ T+ ENI L +EI++ R A I +L + + Q
Sbjct: 85 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ--- 141
Query: 563 RGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLV 620
LSGGQ+QR+A+ARA++ P +LL+DE S LD++ ++ + + + TT+
Sbjct: 142 ----LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIY 197
Query: 621 IAH-RLSTIRKADVVAVLQQGSVSEIGTHDEL 651
+ H ++ + D +AV+ +G + +IG+ E+
Sbjct: 198 VTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 229
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 111/223 (49%), Gaps = 33/223 (14%)
Query: 1104 LSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAI 1163
+S + G+ +AL+GPSGCGK++ + ++ Y+P+SG + D D+ ++ R + +
Sbjct: 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFD--DVLVNDIPPKYREVGM 79
Query: 1164 VPQEPCLFAS-TIYENIAYGHXXXXXXXXXXXXRLANADK--FISSLPDGYKTFVGERGV 1220
V Q L+ T++ENIA+ R+ + I +L D T
Sbjct: 80 VFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPT------- 132
Query: 1221 QLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESE-------RSVQEALDRACSGKTT 1273
QLSGGQ+QRVA+ARA V++ +++L DE S LDA + +Q+ L G T+
Sbjct: 133 QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQEL-----GITS 187
Query: 1274 IVVAH-RLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCY 1315
+ V H + + A IAV + GK+ + G+ PD Y
Sbjct: 188 VYVTHDQAEAMTMASRIAVFNQGKLVQYGT--------PDEVY 222
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 111/228 (48%), Gaps = 13/228 (5%)
Query: 442 EVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDIKSLKLRW 501
+V+ ++ S V G+ +AL ++ Y PTSG++ D + + ++
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY 74
Query: 502 LRQQIGLVSQEPALFA-TTIKENILLGRPDADLNEIEEAARVAN-AYSFIIKLPDGFDTQ 559
+++G+V Q AL+ T+ ENI +++ E RV A +I D
Sbjct: 75 --REVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLI------DNL 126
Query: 560 VGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRT 617
+ + QLSGGQ+QR+A+ARA++K P +LL DE S LD+ +++ + +G T
Sbjct: 127 LDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGIT 186
Query: 618 TLVIAH-RLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLI 664
++ + H + + A +AV QG + + GT DE+ +N A I
Sbjct: 187 SVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFVASFI 234
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 91.3 bits (225), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 105/215 (48%), Gaps = 15/215 (6%)
Query: 1099 PIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLR 1158
P+ +D++ + G+ LA+ G +G GK+S++ ++ EPS G++ G+
Sbjct: 34 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR----------- 82
Query: 1159 RHMAIVPQEPCLFASTIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKTFVGER 1218
++ Q + TI ENI +G + ++ IS + +GE
Sbjct: 83 --ISFCSQFSWIMPGTIKENIIFG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 139
Query: 1219 GVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEA-LDRACSGKTTIVVA 1277
G+ LSGGQ+ R+++ARA + A++ LLD LD +E+ + E+ + + + KT I+V
Sbjct: 140 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 199
Query: 1278 HRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPD 1312
++ ++ A I ++ +G G+ S L PD
Sbjct: 200 SKMEHLKKADKILILHEGSSYFYGTFSELQNLQPD 234
Score = 73.9 bits (180), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 95/208 (45%), Gaps = 15/208 (7%)
Query: 445 ILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDIKSLKLRWLRQ 504
+L + + + G+ +A+ +I +P+ G++ G
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 81
Query: 505 QIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVGERG 564
+I SQ + TIKENI+ G D + I K + + +GE G
Sbjct: 82 RISFCSQFSWIMPGTIKENIIFG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 140
Query: 565 VQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEK-LVQEALDRFMIGRTTLVIAH 623
+ LSGGQ+ RI++ARA+ K+ + LLD LD +EK + + + + M +T +++
Sbjct: 141 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 200
Query: 624 RLSTIRKADVVAVLQQGSVSEIGTHDEL 651
++ ++KAD + +L +GS GT EL
Sbjct: 201 KMEHLKKADKILILHEGSSYFYGTFSEL 228
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 90.9 bits (224), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 105/215 (48%), Gaps = 15/215 (6%)
Query: 1099 PIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLR 1158
P+ +D++ + G+ LA+ G +G GK+S++ ++ EPS G++ G+
Sbjct: 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR----------- 70
Query: 1159 RHMAIVPQEPCLFASTIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKTFVGER 1218
++ Q + TI ENI +G + ++ IS + +GE
Sbjct: 71 --ISFCSQFSWIMPGTIKENIIFG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 127
Query: 1219 GVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEA-LDRACSGKTTIVVA 1277
G+ LSGGQ+ R+++ARA + A++ LLD LD +E+ + E+ + + + KT I+V
Sbjct: 128 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 187
Query: 1278 HRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPD 1312
++ ++ A I ++ +G G+ S L PD
Sbjct: 188 SKMEHLKKADKILILHEGSSYFYGTFSELQNLQPD 222
Score = 73.9 bits (180), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 95/208 (45%), Gaps = 15/208 (7%)
Query: 445 ILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDIKSLKLRWLRQ 504
+L + + + G+ +A+ +I +P+ G++ G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 69
Query: 505 QIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVGERG 564
+I SQ + TIKENI+ G D + I K + + +GE G
Sbjct: 70 RISFCSQFSWIMPGTIKENIIFG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 128
Query: 565 VQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEK-LVQEALDRFMIGRTTLVIAH 623
+ LSGGQ+ RI++ARA+ K+ + LLD LD +EK + + + + M +T +++
Sbjct: 129 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 188
Query: 624 RLSTIRKADVVAVLQQGSVSEIGTHDEL 651
++ ++KAD + +L +GS GT EL
Sbjct: 189 KMEHLKKADKILILHEGSSYFYGTFSEL 216
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 90.5 bits (223), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 108/205 (52%), Gaps = 11/205 (5%)
Query: 1102 RDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161
R +S + R G+ + L+GPSG GK++++ L+ P+ G V I GK R +L +R++
Sbjct: 32 RGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGK--RVTDLPPQKRNV 89
Query: 1162 AIVPQEPCLFAS-TIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKTFVGERGV 1220
+V Q LF T+Y+N+++G R+ +F+ +++
Sbjct: 90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMR-----LESYANRFPH 144
Query: 1221 QLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAH 1278
+LSGGQ+QRVA+ARA + +++L DE +A+D + R ++ + + G T++ V H
Sbjct: 145 ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTH 204
Query: 1279 -RLSTIRNAHVIAVIDDGKVAELGS 1302
+ + A + V+ +G V + G+
Sbjct: 205 DQEEALEVADRVLVLHEGNVEQFGT 229
Score = 80.1 bits (196), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 117/254 (46%), Gaps = 27/254 (10%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQV 487
IE V+ YP R + S + G+ + L LI PT G V
Sbjct: 15 IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEPALFA-TTIKENILLGRPDADLNEIEEAARVANAY 546
+ G + L + ++ +GLV Q ALF T+ +N+ G + + + E ARV
Sbjct: 73 WIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130
Query: 547 SFIIKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDS----ESE 602
F+ ++ +LSGGQ+QR+A+ARA+ P +LL DE +A+D+ E
Sbjct: 131 RFM-----RLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELR 185
Query: 603 KLVQEALDRFMIGRTTLVIAH-RLSTIRKADVVAVLQQGSVSEIGTHDELIAK------- 654
V++ D +G T++ + H + + AD V VL +G+V + GT +E+ K
Sbjct: 186 TFVRQVHDE--MGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLFVA 243
Query: 655 ---GENGVYAKLIR 665
GE+ V+ + ++
Sbjct: 244 SFIGESNVWTRAVQ 257
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 108/226 (47%), Gaps = 15/226 (6%)
Query: 1088 VDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGK 1147
+ FS S P+ +D++ + G+ LA+ G +G GK+S++ ++ EPS G++ G+
Sbjct: 41 LSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR 100
Query: 1148 DIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHXXXXXXXXXXXXRLANADKFISSL 1207
++ Q + TI ENI G + ++ IS
Sbjct: 101 -------------ISFCSQFSWIMPGTIKENIIAG-VSYDEYRYRSVIKACQLEEDISKF 146
Query: 1208 PDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEA-LDR 1266
+ +GE G+ LSGGQ+ R+++ARA + A++ LLD LD +E+ + E+ + +
Sbjct: 147 AEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 206
Query: 1267 ACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPD 1312
+ KT I+V ++ ++ A I ++ +G G+ S L PD
Sbjct: 207 LMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPD 252
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 100/223 (44%), Gaps = 18/223 (8%)
Query: 430 LKHVDFSYPSRPEVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLL 489
L +FS P +L + + + G+ +A+ +I +P+ G++
Sbjct: 41 LSFSNFSLLGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH 97
Query: 490 DGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFI 549
G +I SQ + TIKENI+ G D + I
Sbjct: 98 SG-------------RISFCSQFSWIMPGTIKENIIAG-VSYDEYRYRSVIKACQLEEDI 143
Query: 550 IKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEK-LVQEA 608
K + + +GE G+ LSGGQ+ RI++ARA+ K+ + LLD LD +EK + +
Sbjct: 144 SKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESC 203
Query: 609 LDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDEL 651
+ + M +T +++ ++ ++KAD + +L +GS GT EL
Sbjct: 204 VCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 246
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 87.0 bits (214), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 106/228 (46%), Gaps = 15/228 (6%)
Query: 1086 KHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMID 1145
+V FS+ P+ ++++L G+ LA+ G +G GK+S++ L+ E S G +
Sbjct: 39 NNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 98
Query: 1146 GKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHXXXXXXXXXXXXRLANADKFIS 1205
G+ ++ Q + TI ENI +G + + I+
Sbjct: 99 GR-------------VSFCSQFSWIMPGTIKENIIFG-VSYDEYRYKSVVKACQLQQDIT 144
Query: 1206 SLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEA-L 1264
+ T +GE GV LSGGQ+ R+++ARA + A++ LLD LD +E V E+ +
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 204
Query: 1265 DRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPD 1312
+ + KT I+V ++ +R A I ++ G G+ S L PD
Sbjct: 205 CKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPD 252
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 102/222 (45%), Gaps = 15/222 (6%)
Query: 431 KHVDFSYPSRPEVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLD 490
+V FS+ +L N +L + G+ +A+ LI + + G +
Sbjct: 39 NNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 98
Query: 491 GHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFII 550
G ++ SQ + TIKENI+ G D + + I
Sbjct: 99 G-------------RVSFCSQFSWIMPGTIKENIIFG-VSYDEYRYKSVVKACQLQQDIT 144
Query: 551 KLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEA-L 609
K + +T +GE GV LSGGQ+ RI++ARA+ K+ + LLD LD +E+ V E+ +
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 204
Query: 610 DRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDEL 651
+ M +T +++ ++ +RKAD + +L QGS GT EL
Sbjct: 205 CKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 86.7 bits (213), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 106/224 (47%), Gaps = 16/224 (7%)
Query: 1090 FSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDI 1149
FS S P+ +D++ + G+ LA+ G +G GK+S++ ++ EPS G++ G+
Sbjct: 43 FSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR-- 100
Query: 1150 RKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPD 1209
++ Q + TI ENI + ++ IS +
Sbjct: 101 -----------ISFCSQNSWIMPGTIKENII--GVSYDEYRYRSVIKACQLEEDISKFAE 147
Query: 1210 GYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEA-LDRAC 1268
+GE G+ LSGGQ+ R+++ARA + A++ LLD LD +E+ + E+ + +
Sbjct: 148 KDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 207
Query: 1269 SGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPD 1312
+ KT I+V ++ ++ A I ++ +G G+ S L PD
Sbjct: 208 ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPD 251
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 98/219 (44%), Gaps = 19/219 (8%)
Query: 434 DFSYPSRPEVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHD 493
+FS P +L + + + G+ +A+ +I +P+ G++ G
Sbjct: 45 NFSLLGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-- 99
Query: 494 IKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLP 553
+I SQ + TIKENI+ D + I K
Sbjct: 100 -----------RISFCSQNSWIMPGTIKENII--GVSYDEYRYRSVIKACQLEEDISKFA 146
Query: 554 DGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEK-LVQEALDRF 612
+ + +GE G+ LSGGQ+ RI++ARA+ K+ + LLD LD +EK + + + +
Sbjct: 147 EKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL 206
Query: 613 MIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDEL 651
M +T +++ ++ ++KAD + +L +GS GT EL
Sbjct: 207 MANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 86.7 bits (213), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 107/226 (47%), Gaps = 16/226 (7%)
Query: 1088 VDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGK 1147
+ FS S P+ +D++ + G+ LA+ G +G GK+S++ ++ EPS G++ G+
Sbjct: 41 LSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR 100
Query: 1148 DIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHXXXXXXXXXXXXRLANADKFISSL 1207
++ Q + TI ENI + ++ IS
Sbjct: 101 -------------ISFCSQNSWIMPGTIKENII--GVSYDEYRYRSVIKACQLEEDISKF 145
Query: 1208 PDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEA-LDR 1266
+ +GE G+ LSGGQ+ R+++ARA + A++ LLD LD +E+ + E+ + +
Sbjct: 146 AEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 205
Query: 1267 ACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPD 1312
+ KT I+V ++ ++ A I ++ +G G+ S L PD
Sbjct: 206 LMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPD 251
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 99/223 (44%), Gaps = 19/223 (8%)
Query: 430 LKHVDFSYPSRPEVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLL 489
L +FS P +L + + + G+ +A+ +I +P+ G++
Sbjct: 41 LSFSNFSLLGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH 97
Query: 490 DGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFI 549
G +I SQ + TIKENI+ D + I
Sbjct: 98 SG-------------RISFCSQNSWIMPGTIKENII--GVSYDEYRYRSVIKACQLEEDI 142
Query: 550 IKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEK-LVQEA 608
K + + +GE G+ LSGGQ+ RI++ARA+ K+ + LLD LD +EK + +
Sbjct: 143 SKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESC 202
Query: 609 LDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDEL 651
+ + M +T +++ ++ ++KAD + +L +GS GT EL
Sbjct: 203 VCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 86.7 bits (213), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 106/228 (46%), Gaps = 15/228 (6%)
Query: 1086 KHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMID 1145
+V FS+ P+ ++++L G+ LA+ G +G GK+S++ L+ E S G +
Sbjct: 39 NNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 98
Query: 1146 GKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHXXXXXXXXXXXXRLANADKFIS 1205
G+ ++ Q + TI ENI +G + + I+
Sbjct: 99 GR-------------VSFCSQFSWIMPGTIKENIIFG-VSYDEYRYKSVVKACQLQQDIT 144
Query: 1206 SLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEA-L 1264
+ T +GE GV LSGGQ+ R+++ARA + A++ LLD LD +E V E+ +
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 204
Query: 1265 DRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPD 1312
+ + KT I+V ++ +R A I ++ G G+ S L PD
Sbjct: 205 CKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPD 252
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 102/222 (45%), Gaps = 15/222 (6%)
Query: 431 KHVDFSYPSRPEVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLD 490
+V FS+ +L N +L + G+ +A+ LI + + G +
Sbjct: 39 NNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 98
Query: 491 GHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFII 550
G ++ SQ + TIKENI+ G D + + I
Sbjct: 99 G-------------RVSFCSQFSWIMPGTIKENIIFG-VSYDEYRYKSVVKACQLQQDIT 144
Query: 551 KLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEA-L 609
K + +T +GE GV LSGGQ+ RI++ARA+ K+ + LLD LD +E+ V E+ +
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 204
Query: 610 DRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDEL 651
+ M +T +++ ++ +RKAD + +L QGS GT EL
Sbjct: 205 CKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 86.7 bits (213), Expect = 9e-17, Method: Composition-based stats.
Identities = 67/230 (29%), Positives = 118/230 (51%), Gaps = 14/230 (6%)
Query: 1101 FRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRH 1160
++SL G+ L + G +G GKS+++ +V EP+SG V+ DG+ + Y +RR+
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 81
Query: 1161 MAIVPQEP--CLFASTIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKTFVGER 1218
+ I Q P FA +++ +A+ + A +F+ D +K V
Sbjct: 82 IGIAFQYPEDQFFAERVFDEVAFA-VKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRV--- 137
Query: 1219 GVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDR-ACSGKTTIVVA 1277
LSGG+K+RVAIA V + +I++LDE LD E + + +++ GKT I+++
Sbjct: 138 PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS 197
Query: 1278 HRLSTIRNAHV--IAVIDDGKVAELGSHSHLL-KNNPDGCYARMIQLQRF 1324
H + T+ N HV + V++ GK G+ L K +P ++M+ ++R
Sbjct: 198 HDIETVIN-HVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTSKMLVMRRL 246
Score = 78.2 bits (191), Expect = 3e-14, Method: Composition-based stats.
Identities = 69/239 (28%), Positives = 110/239 (46%), Gaps = 21/239 (8%)
Query: 426 GLIELKHVD--FSYPSRPEVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPT 483
G IE+ +V F + E + L N SL + G+ + + ++ +PT
Sbjct: 3 GRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT 62
Query: 484 SGQVLLDGHDIKSLKLRWLRQQIGLVSQEP--ALFATTIKENILLG----RPDADLNEIE 537
SG VL DG K ++R + IG+ Q P FA + + + PD D
Sbjct: 63 SGDVLYDGERKKGYEIR---RNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRD----- 114
Query: 538 EAARVANAYSFIIKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSAL 597
V A F+ D F +V LSGG+K+R+AIA ++ P IL+LDE L
Sbjct: 115 PVPLVKKAMEFVGLDFDSFKDRVP---FFLSGGEKRRVAIASVIVHEPDILILDEPLVGL 171
Query: 598 DSESEKLVQEALDRF-MIGRTTLVIAHRLST-IRKADVVAVLQQGSVSEIGTHDELIAK 654
D E + + ++++ +G+T ++I+H + T I D V VL++G GT E + K
Sbjct: 172 DREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 230
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 86.3 bits (212), Expect = 9e-17, Method: Composition-based stats.
Identities = 67/230 (29%), Positives = 118/230 (51%), Gaps = 14/230 (6%)
Query: 1101 FRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRH 1160
++SL G+ L + G +G GKS+++ +V EP+SG V+ DG+ + Y +RR+
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79
Query: 1161 MAIVPQEP--CLFASTIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKTFVGER 1218
+ I Q P FA +++ +A+ + A +F+ D +K V
Sbjct: 80 IGIAFQYPEDQFFAERVFDEVAFA-VKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRV--- 135
Query: 1219 GVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDR-ACSGKTTIVVA 1277
LSGG+K+RVAIA V + +I++LDE LD E + + +++ GKT I+++
Sbjct: 136 PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS 195
Query: 1278 HRLSTIRNAHV--IAVIDDGKVAELGSHSHLL-KNNPDGCYARMIQLQRF 1324
H + T+ N HV + V++ GK G+ L K +P ++M+ ++R
Sbjct: 196 HDIETVIN-HVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTSKMLVMRRL 244
Score = 77.8 bits (190), Expect = 4e-14, Method: Composition-based stats.
Identities = 66/236 (27%), Positives = 109/236 (46%), Gaps = 20/236 (8%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQ 486
++ + H+ F + E + L N SL + G+ + + ++ +PTSG
Sbjct: 5 VVNVSHI-FHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGD 63
Query: 487 VLLDGHDIKSLKLRWLRQQIGLVSQEP--ALFATTIKENILLG----RPDADLNEIEEAA 540
VL DG K ++R + IG+ Q P FA + + + PD D
Sbjct: 64 VLYDGERKKGYEIR---RNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRD-----PVP 115
Query: 541 RVANAYSFIIKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSE 600
V A F+ D F +V LSGG+K+R+AIA ++ P IL+LDE LD E
Sbjct: 116 LVKKAMEFVGLDFDSFKDRVP---FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDRE 172
Query: 601 SEKLVQEALDRF-MIGRTTLVIAHRLST-IRKADVVAVLQQGSVSEIGTHDELIAK 654
+ + ++++ +G+T ++I+H + T I D V VL++G GT E + K
Sbjct: 173 GKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 103/215 (47%), Gaps = 16/215 (7%)
Query: 1099 PIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLR 1158
P+ +D++ + G+ LA+ G +G GK+S++ ++ EPS G++ G+
Sbjct: 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR----------- 70
Query: 1159 RHMAIVPQEPCLFASTIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKTFVGER 1218
++ Q + TI ENI + ++ IS + +GE
Sbjct: 71 --ISFCSQFSWIMPGTIKENII--GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 126
Query: 1219 GVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEA-LDRACSGKTTIVVA 1277
G+ LSGGQ+ R+++ARA + A++ LLD LD +E+ + E+ + + + KT I+V
Sbjct: 127 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 186
Query: 1278 HRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPD 1312
++ ++ A I ++ +G G+ S L PD
Sbjct: 187 SKMEHLKKADKILILHEGSSYFYGTFSELQNLQPD 221
Score = 70.1 bits (170), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 94/208 (45%), Gaps = 16/208 (7%)
Query: 445 ILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDIKSLKLRWLRQ 504
+L + + + G+ +A+ +I +P+ G++ G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 69
Query: 505 QIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVGERG 564
+I SQ + TIKENI+ D + I K + + +GE G
Sbjct: 70 RISFCSQFSWIMPGTIKENII--GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 127
Query: 565 VQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEK-LVQEALDRFMIGRTTLVIAH 623
+ LSGGQ+ RI++ARA+ K+ + LLD LD +EK + + + + M +T +++
Sbjct: 128 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 187
Query: 624 RLSTIRKADVVAVLQQGSVSEIGTHDEL 651
++ ++KAD + +L +GS GT EL
Sbjct: 188 KMEHLKKADKILILHEGSSYFYGTFSEL 215
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 85.1 bits (209), Expect = 2e-16, Method: Composition-based stats.
Identities = 66/226 (29%), Positives = 113/226 (50%), Gaps = 15/226 (6%)
Query: 1083 VELKHVDFSYPSRPDIPI-FRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR 1141
++LK+V +Y +I ++++L + G+ ++++GPSG GKS+++ ++ +P+ G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1142 VMIDG---KDIRKYNLKSLRR-HMAIVPQE----PCLFASTIYENIAYGHXXXXXXXXXX 1193
V ID D+ L +RR + V Q+ P L T EN+
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL---TALENVELPLIFKYRGAMSG 118
Query: 1194 XXRLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALD 1253
R A + + + + + F + QLSGGQ+QRVAIARA I+L D+ T ALD
Sbjct: 119 EERRKRALECLK-MAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALD 177
Query: 1254 AESERSVQEALDRACS--GKTTIVVAHRLSTIRNAHVIAVIDDGKV 1297
+++ + + L + GKT +VV H ++ R I + DG+V
Sbjct: 178 SKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 77.0 bits (188), Expect = 6e-14, Method: Composition-based stats.
Identities = 63/227 (27%), Positives = 112/227 (49%), Gaps = 15/227 (6%)
Query: 427 LIELKHVDFSYPSRPEV-RILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSG 485
+I+LK+V +Y E+ L N +L + G+ +++ +I PT G
Sbjct: 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 486 QVLLDG---HDIKSLKLRWLRQ-QIGLVSQE----PALFATTIKENILLGRPDADLNEIE 537
+V +D +D+ +L +R+ +IG V Q+ P L A E L+ + ++ E
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120
Query: 538 EAARVANAYSFIIKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSAL 597
R +K+ + + + QLSGGQ+QR+AIARA+ NP I+L D+ T AL
Sbjct: 121 RRKRALEC----LKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGAL 176
Query: 598 DSESEKLVQEALDRF--MIGRTTLVIAHRLSTIRKADVVAVLQQGSV 642
DS++ + + + L + G+T +V+ H ++ R + + L+ G V
Sbjct: 177 DSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 104/215 (48%), Gaps = 15/215 (6%)
Query: 1099 PIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLR 1158
P+ +D++ + G+ LA+ G +G GK+S++ ++ EPS G++ G+
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR----------- 100
Query: 1159 RHMAIVPQEPCLFASTIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKTFVGER 1218
++ Q + TI ENI +G + ++ IS + +GE
Sbjct: 101 --ISFCSQFSWIMPGTIKENIIFG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 157
Query: 1219 GVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEA-LDRACSGKTTIVVA 1277
G+ LS GQ+ ++++ARA + A++ LLD LD +E+ + E+ + + + KT I+V
Sbjct: 158 GITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 217
Query: 1278 HRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPD 1312
++ ++ A I ++ +G G+ S L PD
Sbjct: 218 SKMEHLKKADKILILHEGSSYFYGTFSELQNLQPD 252
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 94/208 (45%), Gaps = 15/208 (7%)
Query: 445 ILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDIKSLKLRWLRQ 504
+L + + + G+ +A+ +I +P+ G++ G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 505 QIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVGERG 564
+I SQ + TIKENI+ G D + I K + + +GE G
Sbjct: 100 RISFCSQFSWIMPGTIKENIIFG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 158
Query: 565 VQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEK-LVQEALDRFMIGRTTLVIAH 623
+ LS GQ+ +I++ARA+ K+ + LLD LD +EK + + + + M +T +++
Sbjct: 159 ITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 218
Query: 624 RLSTIRKADVVAVLQQGSVSEIGTHDEL 651
++ ++KAD + +L +GS GT EL
Sbjct: 219 KMEHLKKADKILILHEGSSYFYGTFSEL 246
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 105/227 (46%), Gaps = 15/227 (6%)
Query: 1087 HVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDG 1146
+V FS+ P+ ++++L G+ LA+ G +G GK+S++ L+ E S G + G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 1147 KDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHXXXXXXXXXXXXRLANADKFISS 1206
+ ++ Q + TI ENI G + + I+
Sbjct: 100 R-------------VSFCSQFSWIMPGTIKENIIRG-VSYDEYRYKSVVKACQLQQDITK 145
Query: 1207 LPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEA-LD 1265
+ T +GE GV LSGGQ+ R+++ARA + A++ LLD LD +E V E+ +
Sbjct: 146 FAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 205
Query: 1266 RACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPD 1312
+ + KT I+V ++ +R A I ++ G G+ S L PD
Sbjct: 206 KLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPD 252
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 102/221 (46%), Gaps = 15/221 (6%)
Query: 432 HVDFSYPSRPEVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDG 491
+V FS+ +L N +L + G+ +A+ LI + + G + G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 492 HDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIK 551
++ SQ + TIKENI+ G D + + I K
Sbjct: 100 -------------RVSFCSQFSWIMPGTIKENIIRG-VSYDEYRYKSVVKACQLQQDITK 145
Query: 552 LPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEA-LD 610
+ +T +GE GV LSGGQ+ RI++ARA+ K+ + LLD LD +E+ V E+ +
Sbjct: 146 FAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 205
Query: 611 RFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDEL 651
+ M +T +++ ++ +RKAD + +L QGS GT EL
Sbjct: 206 KLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 84.7 bits (208), Expect = 3e-16, Method: Composition-based stats.
Identities = 67/226 (29%), Positives = 113/226 (50%), Gaps = 15/226 (6%)
Query: 1083 VELKHVDFSYPSRPDIPI-FRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR 1141
V+LK+V +Y +I ++++L + G+ ++++GPSG GKS+++ ++ +P+ G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1142 VMIDG---KDIRKYNLKSLRR-HMAIVPQE----PCLFASTIYENIAYGHXXXXXXXXXX 1193
V ID D+ L +RR + V Q+ P L T EN+
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL---TALENVELPLIFKYRGAMSG 118
Query: 1194 XXRLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALD 1253
R A + + + + + F + QLSGGQ+QRVAIARA I+L D+ T ALD
Sbjct: 119 EERRKRALECLK-MAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALD 177
Query: 1254 AESERSVQEALDRACS--GKTTIVVAHRLSTIRNAHVIAVIDDGKV 1297
+++ + + L + GKT +VV H ++ R I + DG+V
Sbjct: 178 SKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 75.5 bits (184), Expect = 2e-13, Method: Composition-based stats.
Identities = 62/227 (27%), Positives = 112/227 (49%), Gaps = 15/227 (6%)
Query: 427 LIELKHVDFSYPSRPEV-RILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSG 485
+++LK+V +Y E+ L N +L + G+ +++ +I PT G
Sbjct: 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 486 QVLLDG---HDIKSLKLRWLRQ-QIGLVSQE----PALFATTIKENILLGRPDADLNEIE 537
+V +D +D+ +L +R+ +IG V Q+ P L A E L+ + ++ E
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120
Query: 538 EAARVANAYSFIIKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSAL 597
R +K+ + + + QLSGGQ+QR+AIARA+ NP I+L D+ T AL
Sbjct: 121 RRKRALEC----LKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWAL 176
Query: 598 DSESEKLVQEALDRF--MIGRTTLVIAHRLSTIRKADVVAVLQQGSV 642
DS++ + + + L + G+T +V+ H ++ R + + L+ G V
Sbjct: 177 DSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 84.7 bits (208), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 105/227 (46%), Gaps = 15/227 (6%)
Query: 1087 HVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDG 1146
+V FS+ P+ ++++L G+ LA+ G +G GK+S++ L+ E S G + G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 1147 KDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHXXXXXXXXXXXXRLANADKFISS 1206
+ ++ Q + TI ENI G + + I+
Sbjct: 100 R-------------VSFCSQFSWIMPGTIKENIISG-VSYDEYRYKSVVKACQLQQDITK 145
Query: 1207 LPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEA-LD 1265
+ T +GE GV LSGGQ+ R+++ARA + A++ LLD LD +E V E+ +
Sbjct: 146 FAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 205
Query: 1266 RACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPD 1312
+ + KT I+V ++ +R A I ++ G G+ S L PD
Sbjct: 206 KLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPD 252
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 102/221 (46%), Gaps = 15/221 (6%)
Query: 432 HVDFSYPSRPEVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDG 491
+V FS+ +L N +L + G+ +A+ LI + + G + G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 492 HDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIK 551
++ SQ + TIKENI+ G D + + I K
Sbjct: 100 -------------RVSFCSQFSWIMPGTIKENIISG-VSYDEYRYKSVVKACQLQQDITK 145
Query: 552 LPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEA-LD 610
+ +T +GE GV LSGGQ+ RI++ARA+ K+ + LLD LD +E+ V E+ +
Sbjct: 146 FAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 205
Query: 611 RFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDEL 651
+ M +T +++ ++ +RKAD + +L QGS GT EL
Sbjct: 206 KLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 84.0 bits (206), Expect = 5e-16, Method: Composition-based stats.
Identities = 68/226 (30%), Positives = 111/226 (49%), Gaps = 15/226 (6%)
Query: 1083 VELKHVDFSYPSRPDIPI-FRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR 1141
++LK+V +Y +I ++++L + G+ +++ GPSG GKS+ + ++ +P+ G
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 1142 VMIDG---KDIRKYNLKSLRR-HMAIVPQE----PCLFASTIYENIAYGHXXXXXXXXXX 1193
V ID D+ L +RR + V Q+ P L T EN+
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL---TALENVELPLIFKYRGAXSG 118
Query: 1194 XXRLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALD 1253
R A + + + + F + QLSGGQ+QRVAIARA I+L DE T ALD
Sbjct: 119 EERRKRALECLKX-AELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALD 177
Query: 1254 AESERSVQEALDRACS--GKTTIVVAHRLSTIRNAHVIAVIDDGKV 1297
+++ + + L + GKT +VV H ++ R I + DG+V
Sbjct: 178 SKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 74.7 bits (182), Expect = 3e-13, Method: Composition-based stats.
Identities = 66/226 (29%), Positives = 111/226 (49%), Gaps = 15/226 (6%)
Query: 428 IELKHVDFSYPSRPEV-RILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQ 486
I+LK+V +Y E+ L N +L + G+ +++ +I PT G+
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 487 VLLDG---HDIKSLKLRWLRQ-QIGLVSQE----PALFATTIKENILLGRPDADLNEIEE 538
V +D +D+ +L +R+ +IG V Q+ P L A E L+ + + E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEER 121
Query: 539 AARVANAYSFIIKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALD 598
R +K + + + QLSGGQ+QR+AIARA+ NP I+L DE T ALD
Sbjct: 122 RKRALEC----LKXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALD 177
Query: 599 SESEKLVQEALDRF--MIGRTTLVIAHRLSTIRKADVVAVLQQGSV 642
S++ + + + L + G+T +V+ H ++ R + + L+ G V
Sbjct: 178 SKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 99/215 (46%), Gaps = 9/215 (4%)
Query: 1098 IPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIR--KYNLK 1155
+ + + +++ R G+ + ++GPSG GKS+ + + + G ++IDG +++ NL
Sbjct: 16 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 75
Query: 1156 SLRRHMAIVPQEPCLFAS-TIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKTF 1214
+R + +V Q LF T+ NI A A + + + G K
Sbjct: 76 KVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAE--AKAMELLDKV--GLKDK 131
Query: 1215 VGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDR-ACSGKTT 1273
LSGGQ QRVAIARA + +IML DE TSALD E V + + A G T
Sbjct: 132 AHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTM 191
Query: 1274 IVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLL 1307
+VV H + R + +D G + E G L
Sbjct: 192 VVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLF 226
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 90/182 (49%), Gaps = 9/182 (4%)
Query: 481 DPTSGQVLLDGHDIKS--LKLRWLRQQIGLVSQEPALFA-TTIKENILLGRPDADLNEIE 537
D G++++DG ++K+ L +R+++G+V Q LF T+ NI L E
Sbjct: 54 DFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPRE 113
Query: 538 EAARVANAYSFIIKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSAL 597
+A A A + K+ G + LSGGQ QR+AIARA+ P I+L DE TSAL
Sbjct: 114 KAE--AKAMELLDKV--GLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSAL 169
Query: 598 DSESEKLVQEALDRFMI-GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKG 655
D E V + + G T +V+ H + R+ D V + G + E G ++L +
Sbjct: 170 DPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP 229
Query: 656 EN 657
++
Sbjct: 230 QH 231
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 99/215 (46%), Gaps = 9/215 (4%)
Query: 1098 IPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIR--KYNLK 1155
+ + + +++ R G+ + ++GPSG GKS+ + + + G ++IDG +++ NL
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 96
Query: 1156 SLRRHMAIVPQEPCLFAS-TIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKTF 1214
+R + +V Q LF T+ NI A A + + + G K
Sbjct: 97 KVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAE--AKAMELLDKV--GLKDK 152
Query: 1215 VGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDR-ACSGKTT 1273
LSGGQ QRVAIARA + +IML DE TSALD E V + + A G T
Sbjct: 153 AHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTM 212
Query: 1274 IVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLL 1307
+VV H + R + +D G + E G L
Sbjct: 213 VVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLF 247
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 93/188 (49%), Gaps = 12/188 (6%)
Query: 475 LIERFYDPTSGQVLLDGHDIKS--LKLRWLRQQIGLVSQEPALFA-TTIKENILLGRPDA 531
L+E F G++++DG ++K+ L +R+++G+V Q LF T+ NI L
Sbjct: 72 LLEDF---DEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKV 128
Query: 532 DLNEIEEAARVANAYSFIIKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLD 591
E+A A A + K+ G + LSGGQ QR+AIARA+ P I+L D
Sbjct: 129 RKWPREKAE--AKAMELLDKV--GLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFD 184
Query: 592 EATSALDSESEKLVQEALDRFMI-GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHD 649
E TSALD E V + + G T +V+ H + R+ D V + G + E G +
Sbjct: 185 EPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPE 244
Query: 650 ELIAKGEN 657
+L + ++
Sbjct: 245 DLFDRPQH 252
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 104/228 (45%), Gaps = 16/228 (7%)
Query: 1086 KHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMID 1145
+V FS+ P+ ++++L G+ LA+ G +G GK+S++ L+ E S G +
Sbjct: 39 NNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 98
Query: 1146 GKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHXXXXXXXXXXXXRLANADKFIS 1205
G+ ++ Q + TI ENI + + I+
Sbjct: 99 GR-------------VSFCSQFSWIMPGTIKENII--GVSYDEYRYKSVVKACQLQQDIT 143
Query: 1206 SLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEA-L 1264
+ T +GE GV LSGGQ+ R+++ARA + A++ LLD LD +E V E+ +
Sbjct: 144 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 203
Query: 1265 DRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPD 1312
+ + KT I+V ++ +R A I ++ G G+ S L PD
Sbjct: 204 CKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPD 251
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 101/222 (45%), Gaps = 16/222 (7%)
Query: 431 KHVDFSYPSRPEVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLD 490
+V FS+ +L N +L + G+ +A+ LI + + G +
Sbjct: 39 NNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 98
Query: 491 GHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFII 550
G ++ SQ + TIKENI+ D + + I
Sbjct: 99 G-------------RVSFCSQFSWIMPGTIKENII--GVSYDEYRYKSVVKACQLQQDIT 143
Query: 551 KLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEA-L 609
K + +T +GE GV LSGGQ+ RI++ARA+ K+ + LLD LD +E+ V E+ +
Sbjct: 144 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 203
Query: 610 DRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDEL 651
+ M +T +++ ++ +RKAD + +L QGS GT EL
Sbjct: 204 CKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 245
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 80.9 bits (198), Expect = 4e-15, Method: Composition-based stats.
Identities = 61/197 (30%), Positives = 97/197 (49%), Gaps = 15/197 (7%)
Query: 1116 LVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS-T 1174
L+GP+G GKS + L+ +P G V ++G DI L RR + VPQ+ LF +
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP--LPPERRGIGFVPQDYALFPHLS 86
Query: 1175 IYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIAR 1234
+Y NIAYG A+K G + + +LSGG++QRVA+AR
Sbjct: 87 VYRNIAYG-LRNVERVERDRRVREMAEKL------GIAHLLDRKPARLSGGERQRVALAR 139
Query: 1235 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHV----IA 1290
A V + ++LLDE SA+D +++ + E L R + + + H + A + +A
Sbjct: 140 ALVIQPRLLLLDEPLSAVDLKTKGVLMEEL-RFVQREFDVPILHVTHDLIEAAMLADEVA 198
Query: 1291 VIDDGKVAELGSHSHLL 1307
V+ +G++ E G L
Sbjct: 199 VMLNGRIVEKGKLKELF 215
Score = 69.3 bits (168), Expect = 1e-11, Method: Composition-based stats.
Identities = 65/195 (33%), Positives = 97/195 (49%), Gaps = 16/195 (8%)
Query: 475 LIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFA-TTIKENILLGRPDADL 533
LI P G+V L+G DI L R+ IG V Q+ ALF ++ NI G L
Sbjct: 43 LIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLSVYRNIAYG-----L 95
Query: 534 NEIEEAARVANAYSFIIKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEA 593
+E R KL G + + +LSGG++QR+A+ARA++ P +LLLDE
Sbjct: 96 RNVERVERDRRVREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEP 153
Query: 594 TSALDSESEKLVQEALDRFMIGRTTLVIAH----RLSTIRKADVVAVLQQGSVSEIGTHD 649
SA+D +++ ++ E L RF+ + I H + AD VAV+ G + E G
Sbjct: 154 LSAVDLKTKGVLMEEL-RFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLK 212
Query: 650 ELIAKGENGVYAKLI 664
EL + +NG A+ +
Sbjct: 213 ELFS-AKNGEVAEFL 226
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With
Atp
Length = 290
Score = 80.1 bits (196), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 102/215 (47%), Gaps = 16/215 (7%)
Query: 1099 PIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLR 1158
P+ +D++ + G+ LA+ G +G GK+S++ ++ EPS G++ G+
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR----------- 100
Query: 1159 RHMAIVPQEPCLFASTIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKTFVGER 1218
++ Q + TI ENI + ++ IS + +GE
Sbjct: 101 --ISFCSQFSWIMPGTIKENII--GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 156
Query: 1219 GVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEA-LDRACSGKTTIVVA 1277
G+ LS GQ+ ++++ARA + A++ LLD LD +E+ + E+ + + + KT I+V
Sbjct: 157 GITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 216
Query: 1278 HRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPD 1312
++ ++ A I ++ +G G+ S L PD
Sbjct: 217 SKMEHLKKADKILILHEGSSYFYGTFSELQNLQPD 251
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 93/208 (44%), Gaps = 16/208 (7%)
Query: 445 ILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDIKSLKLRWLRQ 504
+L + + + G+ +A+ +I +P+ G++ G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 505 QIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVGERG 564
+I SQ + TIKENI+ D + I K + + +GE G
Sbjct: 100 RISFCSQFSWIMPGTIKENII--GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 157
Query: 565 VQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEK-LVQEALDRFMIGRTTLVIAH 623
+ LS GQ+ +I++ARA+ K+ + LLD LD +EK + + + + M +T +++
Sbjct: 158 ITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 217
Query: 624 RLSTIRKADVVAVLQQGSVSEIGTHDEL 651
++ ++KAD + +L +GS GT EL
Sbjct: 218 KMEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 102/209 (48%), Gaps = 11/209 (5%)
Query: 1097 DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKS 1156
++ + +D++L G+ + VGPSGCGKS+++ ++ +SG + I K R +
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEK--RMNDTPP 72
Query: 1157 LRRHMAIVPQEPCLFAS-TIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKTFV 1215
R + +V Q L+ ++ EN+++G R+ + + +
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQ-----LAHLL 127
Query: 1216 GERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTT 1273
+ LSGGQ+QRVAI R V + + LLDE S LDA ++ + R G+T
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTM 187
Query: 1274 IVVAH-RLSTIRNAHVIAVIDDGKVAELG 1301
I V H ++ + A I V+D G+VA++G
Sbjct: 188 IYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 78/150 (52%), Gaps = 9/150 (6%)
Query: 506 IGLVSQEPALFA-TTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVGERG 564
+G+V Q AL+ ++ EN+ G A + RV N + +++L D +
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRV-NQVAEVLQLAHLLD----RKP 131
Query: 565 VQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIA 622
LSGGQ+QR+AI R ++ P++ LLDE S LD+ ++ + R +GRT + +
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT 191
Query: 623 H-RLSTIRKADVVAVLQQGSVSEIGTHDEL 651
H ++ + AD + VL G V+++G EL
Sbjct: 192 HDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 102/209 (48%), Gaps = 11/209 (5%)
Query: 1097 DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKS 1156
++ + +D++L G+ + VGPSGCGKS+++ ++ +SG + I K R +
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEK--RMNDTPP 72
Query: 1157 LRRHMAIVPQEPCLFAS-TIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKTFV 1215
R + +V Q L+ ++ EN+++G R+ + + +
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQ-----LAHLL 127
Query: 1216 GERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTT 1273
+ LSGGQ+QRVAI R V + + LLDE S LDA ++ + R G+T
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTM 187
Query: 1274 IVVAH-RLSTIRNAHVIAVIDDGKVAELG 1301
I V H ++ + A I V+D G+VA++G
Sbjct: 188 IYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 78/150 (52%), Gaps = 9/150 (6%)
Query: 506 IGLVSQEPALFA-TTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVGERG 564
+G+V Q AL+ ++ EN+ G A + RV N + +++L D +
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRV-NQVAEVLQLAHLLD----RKP 131
Query: 565 VQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRF--MIGRTTLVIA 622
LSGGQ+QR+AI R ++ P++ LLDE S LD+ ++ + R +GRT + +
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT 191
Query: 623 H-RLSTIRKADVVAVLQQGSVSEIGTHDEL 651
H ++ + AD + VL G V+++G EL
Sbjct: 192 HDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 103/233 (44%), Gaps = 15/233 (6%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+EL V F Y + +D++ GK +VG +G GK++++ ++ ++G +
Sbjct: 12 IELNSVSFRYNGDY---VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGEI 67
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPC--LFASTIYENIAYGHXXXXXXXXXXXXRLANA 1200
+DG + LR+++ V Q P + +T+ E++A+ R+
Sbjct: 68 FLDGSPADPF---LLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKV 124
Query: 1201 DKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSV 1260
+ + G + LSGGQKQR+AIA R + LDE S LD S+R +
Sbjct: 125 LELV-----GLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREI 179
Query: 1261 QEALDR-ACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPD 1312
+ L+ GK I+V H L + + I I +G + GS ++ D
Sbjct: 180 FQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVEREFD 232
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 81/174 (46%), Gaps = 11/174 (6%)
Query: 484 SGQVLLDGHDIKSLKLRWLRQQIGLVSQEPA--LFATTIKENILLGRPDADLNEIEEAAR 541
+G++ LDG LR+ +G V Q P+ + T++E++ L+E E R
Sbjct: 64 AGEIFLDGSPADPF---LLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKR 120
Query: 542 VANAYSFIIKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSES 601
+ + G + LSGGQKQR+AIA + ++ L LDE S LD S
Sbjct: 121 IKKVLELV-----GLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPS 175
Query: 602 EKLVQEALDRFMI-GRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAK 654
++ + + L+ G+ +++ H L + D + + G++ G+ +E + +
Sbjct: 176 QREIFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVER 229
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The
Abc Transporter Complex Cbionq
Length = 275
Score = 77.8 bits (190), Expect = 4e-14, Method: Composition-based stats.
Identities = 62/239 (25%), Positives = 113/239 (47%), Gaps = 20/239 (8%)
Query: 1085 LKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMI 1144
LK + +Y + +++ + G+ A++G +G GKS++ +PSSGR++
Sbjct: 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILF 67
Query: 1145 DGK--DIRKYNLKSLRRHMAIVPQEP--CLFASTIYENIAYGHXXXXXXXXXXXXRLANA 1200
D K D + + LR + IV Q+P LF++++Y+++++G R+ NA
Sbjct: 68 DNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNA 127
Query: 1201 DKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSV 1260
K G + + LS GQK+RVAIA V + ++++LDE T+ LD +
Sbjct: 128 LK-----RTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEI 182
Query: 1261 QEALDRACS--GKTTIVVAHRLSTIR-NAHVIAVIDDGKVAELGSHSHLLKNNPDGCYA 1316
+ L G T I+ H + + + V+ +G+V +L+ NP +A
Sbjct: 183 MKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRV--------ILQGNPKEVFA 233
Score = 69.7 bits (169), Expect = 1e-11, Method: Composition-based stats.
Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 16/184 (8%)
Query: 482 PTSGQVLLDGHDIKSLK--LRWLRQQIGLVSQEP--ALFATTIKENILLGRPDADLNEIE 537
P+SG++L D I + + LR+ IG+V Q+P LF+ ++ +++ G + L E E
Sbjct: 60 PSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDE 119
Query: 538 EAARVANAYSFIIKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSAL 597
RV NA G + + LS GQK+R+AIA ++ P +L+LDE T+ L
Sbjct: 120 IRKRVDNALK-----RTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174
Query: 598 D----SESEKLVQEALDRFMIGRTTLVIAHRLSTIR-KADVVAVLQQGSVSEIGTHDELI 652
D SE KL+ E +G T ++ H + + D V V+++G V G E+
Sbjct: 175 DPMGVSEIMKLLVEMQKE--LGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 232
Query: 653 AKGE 656
A+ E
Sbjct: 233 AEKE 236
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 102/209 (48%), Gaps = 11/209 (5%)
Query: 1097 DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKS 1156
++ + +D++L G+ + VGPSGCGKS+++ ++ +SG + I K R +
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEK--RMNDTPP 72
Query: 1157 LRRHMAIVPQEPCLFAS-TIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKTFV 1215
R + +V Q L+ ++ EN+++G R+ + + +
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQ-----LAHLL 127
Query: 1216 GERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTT 1273
+ LSGGQ+QRVAI R V + + LLD+ S LDA ++ + R G+T
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTM 187
Query: 1274 IVVAH-RLSTIRNAHVIAVIDDGKVAELG 1301
I V H ++ + A I V+D G+VA++G
Sbjct: 188 IYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 78/150 (52%), Gaps = 9/150 (6%)
Query: 506 IGLVSQEPALFA-TTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVGERG 564
+G+V Q AL+ ++ EN+ G A + RV N + +++L D +
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRV-NQVAEVLQLAHLLD----RKP 131
Query: 565 VQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIA 622
LSGGQ+QR+AI R ++ P++ LLD+ S LD+ ++ + R +GRT + +
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT 191
Query: 623 H-RLSTIRKADVVAVLQQGSVSEIGTHDEL 651
H ++ + AD + VL G V+++G EL
Sbjct: 192 HDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 115/232 (49%), Gaps = 31/232 (13%)
Query: 1100 IFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIR--------- 1150
+ + +SL+ARAG ++++G SG GKS+ + + +PS G ++++G++I
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 1151 ----KYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYGHXXXXXXXXXXXXRLANADKFIS 1205
K L+ LR + +V Q L++ T+ EN+ L+ D
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENV--------MEAPIQVLGLSKHDARER 132
Query: 1206 SLPDGYKTFVGERG-----VQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSV 1260
+L K + ER V LSGGQ+QRV+IARA + +++L DE TSALD E V
Sbjct: 133 ALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEV 192
Query: 1261 QEALDR-ACSGKTTIVVAHRLSTIRN--AHVIAVIDDGKVAELGSHSHLLKN 1309
+ + A GKT +VV H + R+ +HVI + GK+ E G + N
Sbjct: 193 LRIMQQLAEEGKTMVVVTHEMGFARHVSSHVI-FLHQGKIEEEGDPEQVFGN 243
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 109/230 (47%), Gaps = 29/230 (12%)
Query: 445 ILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDIKSLK------ 498
+L SL AG I++ I P+ G ++++G +I ++
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 499 -------LRWLRQQIGLVSQEPALFA-TTIKENILLGRPDADLNEIEEAARVANAYSFII 550
LR LR ++ +V Q L++ T+ EN++ P L + AR A ++
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA-PIQVLGLSKHDAR-ERALKYLA 138
Query: 551 KLPDGFDTQV-GERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEAL 609
K+ G D + G+ V LSGGQ+QR++IARA+ P +LL DE TSALD E LV E L
Sbjct: 139 KV--GIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE---LVGEVL 193
Query: 610 DRFMI-----GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIA 653
R M G+T +V+ H + R + V L QG + E G +++
Sbjct: 194 -RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFG 242
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 75.9 bits (185), Expect = 2e-13, Method: Composition-based stats.
Identities = 59/204 (28%), Positives = 97/204 (47%), Gaps = 11/204 (5%)
Query: 1100 IFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSL-- 1157
I + +SL + G+ ++++G SG GKS+++ ++ P+ G+V ++GK++ N K L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 1158 --RRHMAIVPQEPCLFAS-TIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKTF 1214
R + V Q L T EN+ R + +S L G K
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKER---GEYLLSELGLGDK-- 133
Query: 1215 VGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTI 1274
+ + +LSGG++QRVAIARA + ++ DE T LD+ + + V + + G T+I
Sbjct: 134 LSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSI 193
Query: 1275 V-VAHRLSTIRNAHVIAVIDDGKV 1297
V V H H + DGKV
Sbjct: 194 VMVTHERELAELTHRTLEMKDGKV 217
Score = 62.4 bits (150), Expect = 2e-09, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 91/182 (50%), Gaps = 10/182 (5%)
Query: 445 ILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDI---KSLKLRW 501
IL SL+V G+ +++ ++ PT G+V L+G ++ +L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 502 LR-QQIGLVSQEPALFAT-TIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQ 559
LR +++G V Q L T EN+++ P + + ++ A+ Y + +L G +
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIV--PMLKMGKPKKEAKERGEY-LLSEL--GLGDK 133
Query: 560 VGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTL 619
+ + +LSGG++QR+AIARA+ P +L DE T LDS + K V + + G T++
Sbjct: 134 LSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSI 193
Query: 620 VI 621
V+
Sbjct: 194 VM 195
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 6/205 (2%)
Query: 1100 IFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRR 1159
I ++S G+ + L+G +G GKS++++ R + G + IDG L+ R+
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94
Query: 1160 HMAIVPQEPCLFASTIYENI--AYGHXXXXXXXXXXXXRLANADKFISSLPDGYKTFVGE 1217
++PQ+ +F+ T +N+ H L + I P + +
Sbjct: 95 AFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSV---IEQFPGKLDFVLVD 151
Query: 1218 RGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVA 1277
G LS G KQ + +AR+ + KA+I+LLDE ++ LD + + ++ L +A + T I+
Sbjct: 152 GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCE 211
Query: 1278 HRLSTIRNAHVIAVIDDGKVAELGS 1302
R+ + VI++ KV + S
Sbjct: 212 ARIEAMLECDQFLVIEENKVRQYDS 236
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 94/200 (47%), Gaps = 2/200 (1%)
Query: 445 ILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDIKSLKLRWLRQ 504
IL N S ++ G+ + L R + T G++ +DG S+ L R+
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94
Query: 505 QIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVGERG 564
G++ Q+ +F+ T ++N+ +D EI + A S I + P D + + G
Sbjct: 95 AFGVIPQKVFIFSGTFRKNLDPNAAHSD-QEIWKVADEVGLRSVIEQFPGKLDFVLVDGG 153
Query: 565 VQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHR 624
LS G KQ + +AR++L ILLLDE ++ LD + ++++ L + T ++ R
Sbjct: 154 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEAR 213
Query: 625 LSTIRKADVVAVLQQGSVSE 644
+ + + D V+++ V +
Sbjct: 214 IEAMLECDQFLVIEENKVRQ 233
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 101/214 (47%), Gaps = 12/214 (5%)
Query: 1103 DLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIR---KYNLKSLRR 1159
++++ G+ ++GPSG GK++ + ++ PS+G + D + + K + R
Sbjct: 23 NVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82
Query: 1160 HMAIVPQEPCLFAS-TIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKTFVGER 1218
+ +V Q L+ + T +ENIA+ R+ K + +
Sbjct: 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILD-----IHHVLNHF 137
Query: 1219 GVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVV 1276
+LSGGQ+QRVA+ARA V+ ++LLDE S LDA S + + S G T +VV
Sbjct: 138 PRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVV 197
Query: 1277 AHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309
+H + I A + V+ GK+ ++G L N
Sbjct: 198 SHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 111/221 (50%), Gaps = 28/221 (12%)
Query: 446 LNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDIKS---LKLRWL 502
L+N ++ + G+ + +I P++G++ D + S L +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 503 RQQIGLVSQEPALFAT-TIKENILLGRPDADLNE------IEEAARVANAYSFIIKLPDG 555
++IG+V Q AL+ T ENI + +++ +EE A++ + + + P
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPR- 139
Query: 556 FDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSE----SEKLVQEALDR 611
+LSGGQ+QR+A+ARA++K+P++LLLDE S LD+ + LV+E R
Sbjct: 140 ----------ELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSR 189
Query: 612 FMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDEL 651
+G T LV++H + I AD V VL +G + ++G ++L
Sbjct: 190 --LGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 100/214 (46%), Gaps = 12/214 (5%)
Query: 1103 DLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIR---KYNLKSLRR 1159
++++ G+ ++GPSG GK++ + ++ PS+G + D + + K + R
Sbjct: 23 NVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82
Query: 1160 HMAIVPQEPCLFAS-TIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKTFVGER 1218
+ +V Q L+ + T +ENIA+ R+ K + +
Sbjct: 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILD-----IHHVLNHF 137
Query: 1219 GVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVV 1276
+LSG Q+QRVA+ARA V+ ++LLDE S LDA S + + S G T +VV
Sbjct: 138 PRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVV 197
Query: 1277 AHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309
+H + I A + V+ GK+ ++G L N
Sbjct: 198 SHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 110/221 (49%), Gaps = 28/221 (12%)
Query: 446 LNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDIKS---LKLRWL 502
L+N ++ + G+ + +I P++G++ D + S L +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 503 RQQIGLVSQEPALFAT-TIKENILLGRPDADLNE------IEEAARVANAYSFIIKLPDG 555
++IG+V Q AL+ T ENI + +++ +EE A++ + + + P
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPR- 139
Query: 556 FDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSE----SEKLVQEALDR 611
+LSG Q+QR+A+ARA++K+P++LLLDE S LD+ + LV+E R
Sbjct: 140 ----------ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSR 189
Query: 612 FMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDEL 651
+G T LV++H + I AD V VL +G + ++G ++L
Sbjct: 190 --LGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 68.6 bits (166), Expect = 2e-11, Method: Composition-based stats.
Identities = 54/216 (25%), Positives = 102/216 (47%), Gaps = 9/216 (4%)
Query: 1098 IPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSL 1157
I + + L+ G+ + L+G +G GK++ ++ + G+++ +G+DI +
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Query: 1158 RRH-MAIVPQEPCLFAS-TIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKTFV 1215
R +A+VP+ +F T+YEN+ G + ++I SL K +
Sbjct: 79 NRXGIALVPEGRRIFPELTVYENLXXG-----AYNRKDKEGIKRDLEWIFSLFPRLKERL 133
Query: 1216 GERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIV 1275
+ G LSGG++Q +AI RA + +++ DE + L V E + + TTI+
Sbjct: 134 KQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193
Query: 1276 VAHR--LSTIRNAHVIAVIDDGKVAELGSHSHLLKN 1309
+ + L ++ AH V++ G++ G S LL N
Sbjct: 194 LVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 48/214 (22%), Positives = 87/214 (40%), Gaps = 9/214 (4%)
Query: 443 VRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDIKSLKLRWL 502
+ + L VP G+ + L I G+++ +G DI + +
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Query: 503 -RQQIGLVSQEPALFAT-TIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQV 560
R I LV + +F T+ EN+ G + ++ + +I L ++
Sbjct: 79 NRXGIALVPEGRRIFPELTVYENLXXGAYNR-----KDKEGIKRDLEWIFSLFPRLKERL 133
Query: 561 GERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLV 620
+ G LSGG++Q +AI RA+ P +L DE + L V E + + TT++
Sbjct: 134 KQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193
Query: 621 IAHR--LSTIRKADVVAVLQQGSVSEIGTHDELI 652
+ + L ++ A VL+ G + G EL+
Sbjct: 194 LVEQNALGALKVAHYGYVLETGQIVLEGKASELL 227
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 65.5 bits (158), Expect = 2e-10, Method: Composition-based stats.
Identities = 52/211 (24%), Positives = 100/211 (47%), Gaps = 11/211 (5%)
Query: 1100 IFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRR 1159
I + +S G+ L+GP+G GK++ + ++ +PSSG V + GK++ + +R+
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRK 88
Query: 1160 HMAIVPQEPCLFASTIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPD--GYKTFVGE 1217
++ +P+E + Y N+ G + ++ + + G + +
Sbjct: 89 LISYLPEE-----AGAYRNMQ-GIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD 142
Query: 1218 RGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS-GKTTIVV 1276
R S G +++ IARA + + +LDE TS LD + R V++ L +A G T +V
Sbjct: 143 RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVS 202
Query: 1277 AHRLSTIRN-AHVIAVIDDGKVAELGSHSHL 1306
+H + + IA+I +G + E G+ L
Sbjct: 203 SHNMLEVEFLCDRIALIHNGTIVETGTVEEL 233
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 54/215 (25%), Positives = 93/215 (43%), Gaps = 19/215 (8%)
Query: 445 ILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDIKSLKLRWLRQ 504
IL S + G+ L +I P+SG V + G ++ + +R+
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRK 88
Query: 505 QIGLVSQEPALFATTIKENIL---LGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVG 561
I + +E + L G + +EIEE A + G ++
Sbjct: 89 LISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIA-------GLGEKIK 141
Query: 562 ERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALD----SESEKLVQEALDRFMIGRT 617
+R S G +++ IARA++ NP + +LDE TS LD E K++++A G T
Sbjct: 142 DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE---GLT 198
Query: 618 TLVIAHRLSTIR-KADVVAVLQQGSVSEIGTHDEL 651
LV +H + + D +A++ G++ E GT +EL
Sbjct: 199 ILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 233
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 108/239 (45%), Gaps = 38/239 (15%)
Query: 1104 LSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPS----SGRVMIDGKDI---RKYNLKS 1156
+SL A+VG S GKS++I + + P+ SGRV+ GKD+ R+ L+
Sbjct: 27 ISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRK 86
Query: 1157 LR-RHMAIVPQ------EPCL-----FASTIYEN-IAYGHXXXXXXXXXX--XXRLANAD 1201
+R + +A+VPQ P + F T+ + + + H RL N +
Sbjct: 87 IRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRL-NPE 145
Query: 1202 KFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQ 1261
++S P +QLSGG KQRV IA A + +++LDE TSALD ++ +
Sbjct: 146 AVLNSYP-----------LQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHII 194
Query: 1262 EALDRACSGK--TTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKNNPDGCYAR 1317
+ L T I V H ++ A +AVI G + E S + K NP Y R
Sbjct: 195 QLLKELKKMLKITLIFVTHDIAVAAELADKVAVIYGGNLVEYNSTFQIFK-NPLHPYTR 252
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 565 VQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESE-KLVQEALDRFMIGRTTLV-IA 622
+QLSGG KQR+ IA A+L +P +L+LDE TSALD ++ ++Q + + + TL+ +
Sbjct: 153 LQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFVT 212
Query: 623 HRLSTIRK-ADVVAVLQQGSVSE 644
H ++ + AD VAV+ G++ E
Sbjct: 213 HDIAVAAELADKVAVIYGGNLVE 235
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
Length = 266
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 18/163 (11%)
Query: 1100 IFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRR 1159
+ D+SL +G+ +A++GP+G GKS+++ L+ + PS G + G+++ + K+L R
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR 85
Query: 1160 HMAIVPQEPCL-FASTIYENIAYGHXXXXXXXXXXXXR--LANADKFISSLPDGYKTFVG 1216
A++ Q L F ++ E I G + +A D + D Y+
Sbjct: 86 TRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRD-YRV--- 141
Query: 1217 ERGVQLSGGQKQRVAIARAFVR------KAEIMLLDEATSALD 1253
LSGG++QRV +AR + + LDE TSALD
Sbjct: 142 -----LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALD 179
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 108/238 (45%), Gaps = 22/238 (9%)
Query: 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSG 485
L+E H+ + + ++N+ SL + +G+ +A+ L+ + P+ G
Sbjct: 10 ALLEASHLHYHVQQQ---ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHG 66
Query: 486 QVLLDGHDIKSLKLRWLRQQIGLVSQEPAL-FATTIKENILLGRPDADLNEIEEAARVAN 544
+ L G ++ S + + L + ++ Q L F ++ E I +GR ++ +A +
Sbjct: 67 ECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVM 126
Query: 545 AYSFIIKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLK------NPAILLLDEATSALD 598
A + + L D +V LSGG++QR+ +AR + + P L LDE TSALD
Sbjct: 127 AQTDCLALAQR-DYRV------LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALD 179
Query: 599 SESEKLVQEALDRFMIGRTTLVIAHRLSTIR----KADVVAVLQQGSVSEIGTHDELI 652
++ L R + + L + L + AD + +L QG + GT +E++
Sbjct: 180 LYHQQHTLRLL-RQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 103/244 (42%), Gaps = 38/244 (15%)
Query: 1109 RAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEP 1168
R G+ + +VGP+G GK++ + ++ EP+ G+V D +A PQ
Sbjct: 380 RKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------LTVAYKPQ-- 424
Query: 1169 CLFASTIYENIAYGHXXXXXXXXXXXXRLANADKFISSL--PDGYKTFVGERGVQLSGGQ 1226
+ YE Y N++ + + L P G LSGG+
Sbjct: 425 --YIKAEYEGTVY------ELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGE 476
Query: 1227 KQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIR 1284
QRVAIA +R A+I LLDE ++ LD E +V A+ + KT +VV H + I
Sbjct: 477 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMID 536
Query: 1285 NAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQVIGMT-SGSSSSARPK 1343
++ +G E G H L P G M RF S +G+T S RP+
Sbjct: 537 YVSDRLIVFEG---EPGRHGRALP--PMGMREGM---NRFLAS--VGITFRRDPDSGRPR 586
Query: 1344 DDEE 1347
++E
Sbjct: 587 ANKE 590
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 1221 QLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDR-ACSGKTTIVVAHR 1279
QLSGG+ QRVAIA A +RKA DE +S LD V + R A GK +VV H
Sbjct: 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287
Query: 1280 LSTI 1283
L+ +
Sbjct: 288 LAVL 291
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 533 LNEIEEAARVANAYSFIIKLPDGFDTQVGERGVQ-LSGGQKQRIAIARAMLKNPAILLLD 591
L++I+ + +N Y + P G + +R V+ LSGG+ QR+AIA +L++ I LLD
Sbjct: 438 LSKIDSSKLNSNFYKTELLKPLGI-IDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLD 496
Query: 592 EATSALDSESEKLVQEALDRFMIG--RTTLVIAHRLSTI 628
E ++ LD E V A+ M +T LV+ H + I
Sbjct: 497 EPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMI 535
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 566 QLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMI-GRTTLVIAHR 624
QLSGG+ QR+AIA A+L+ DE +S LD V + R G+ LV+ H
Sbjct: 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287
Query: 625 LSTIRK-ADVVAVL 637
L+ + +DV+ V+
Sbjct: 288 LAVLDYLSDVIHVV 301
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 103/244 (42%), Gaps = 38/244 (15%)
Query: 1109 RAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEP 1168
R G+ + +VGP+G GK++ + ++ EP+ G+V D +A PQ
Sbjct: 366 RKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------LTVAYKPQ-- 410
Query: 1169 CLFASTIYENIAYGHXXXXXXXXXXXXRLANADKFISSL--PDGYKTFVGERGVQLSGGQ 1226
+ YE Y N++ + + L P G LSGG+
Sbjct: 411 --YIKAEYEGTVY------ELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGE 462
Query: 1227 KQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIR 1284
QRVAIA +R A+I LLDE ++ LD E +V A+ + KT +VV H + I
Sbjct: 463 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMID 522
Query: 1285 NAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQVIGMT-SGSSSSARPK 1343
++ +G E G H L P G M RF S +G+T S RP+
Sbjct: 523 YVSDRLIVFEG---EPGRHGRALP--PMGMREGM---NRFLAS--VGITFRRDPDSGRPR 572
Query: 1344 DDEE 1347
++E
Sbjct: 573 ANKE 576
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 1221 QLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDR-ACSGKTTIVVAHR 1279
QLSGG+ QRVAIA A +RKA DE +S LD V + R A GK +VV H
Sbjct: 214 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 273
Query: 1280 LSTI 1283
L+ +
Sbjct: 274 LAVL 277
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 533 LNEIEEAARVANAYSFIIKLPDGFDTQVGERGVQ-LSGGQKQRIAIARAMLKNPAILLLD 591
L++I+ + +N Y + P G + +R V+ LSGG+ QR+AIA +L++ I LLD
Sbjct: 424 LSKIDSSKLNSNFYKTELLKPLGI-IDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLD 482
Query: 592 EATSALDSESEKLVQEALDRFMIG--RTTLVIAHRLSTI 628
E ++ LD E V A+ M +T LV+ H + I
Sbjct: 483 EPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMI 521
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 566 QLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMI-GRTTLVIAHR 624
QLSGG+ QR+AIA A+L+ DE +S LD V + R G+ LV+ H
Sbjct: 214 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 273
Query: 625 LSTIRK-ADVVAVL 637
L+ + +DV+ V+
Sbjct: 274 LAVLDYLSDVIHVV 287
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 94/200 (47%), Gaps = 32/200 (16%)
Query: 1100 IFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRR 1159
+F+ L+ G LA++G +GCGKS+++ L+ + P G++ + +
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-------------YQ 66
Query: 1160 HMAIVPQ---EPCLFASTIYENIAYG---HXXXXXXXXXXXXRLANADKFISSLPDGYKT 1213
+ VPQ P FA ++ + + G H ++A + +L T
Sbjct: 67 SIGFVPQFFSSP--FAYSVLDIVLMGRSTHINTFAKPKSHDYQVA-----MQALDYLNLT 119
Query: 1214 FVGERG-VQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEAL-DRACSGK 1271
+ +R LSGGQ+Q + IARA + +++LLDE TSALD ++ V L D A S
Sbjct: 120 HLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQN 179
Query: 1272 TTIVVAHRLSTIRNAHVIAV 1291
T+V +T + V+A+
Sbjct: 180 MTVV----FTTHQPNQVVAI 195
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 6/105 (5%)
Query: 504 QQIGLVSQE-PALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFD-TQVG 561
Q IG V Q + FA ++ + +L+GR +N A ++ Y ++ D + T +
Sbjct: 66 QSIGFVPQFFSSPFAYSVLDIVLMGR-STHINTF--AKPKSHDYQVAMQALDYLNLTHLA 122
Query: 562 ERG-VQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLV 605
+R LSGGQ+Q I IARA+ ++LLDE TSALD ++ +V
Sbjct: 123 KREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIV 167
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 25/205 (12%)
Query: 1104 LSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR--VMIDGKDIRKYNLKSLRRHM 1161
LS RAG+ L LVGP+G GKS+++A R +SG+ + G+ + ++ L H
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLA---RXAGXTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 1162 AIVPQEPC-LFASTIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKTFVGERGV 1220
A + Q+ FA+ ++ H L N +L D +G
Sbjct: 76 AYLSQQQTPPFATPVW------HYLTLHQHDKTRTELLNDVAGALALDDK----LGRSTN 125
Query: 1221 QLSGGQKQRVAIARAFVR-------KAEIMLLDEATSALDAESERSVQEALDRACSGKTT 1273
QLSGG+ QRV +A ++ +++LLDE ++LD + ++ + L C
Sbjct: 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGLA 185
Query: 1274 IVV-AHRLS-TIRNAHVIAVIDDGK 1296
IV +H L+ T+R+AH ++ GK
Sbjct: 186 IVXSSHDLNHTLRHAHRAWLLKGGK 210
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 27/158 (17%)
Query: 508 LVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVGERGVQL 567
L Q+ FAT + + L + D E+ VA A + D ++G QL
Sbjct: 78 LSQQQTPPFATPVWHYLTLHQHDKTRTELLN--DVAGALAL--------DDKLGRSTNQL 127
Query: 568 SGGQKQRIAIARAMLK-----NPA--ILLLDEATSALDSESEKLVQEALDRFMI-----G 615
SGG+ QR+ +A +L+ NPA +LLLDE ++LD Q ALD+ + G
Sbjct: 128 SGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ----QSALDKILSALCQQG 183
Query: 616 RTTLVIAHRLS-TIRKADVVAVLQQGSVSEIGTHDELI 652
+ +H L+ T+R A +L+ G G +E++
Sbjct: 184 LAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVL 221
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 102/220 (46%), Gaps = 33/220 (15%)
Query: 1104 LSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR--VMIDGKDIRKYNLKSLRRHM 1161
LS RAG+ L LVGP+G GKS+++A R +SG+ + G+ + ++ L H
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLA---RMAGMTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 1162 AIVPQEPC-LFASTIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKTFVGERGV 1220
A + Q+ FA+ ++ H L N +L D +G
Sbjct: 76 AYLSQQQTPPFATPVW------HYLTLHQHDKTRTELLNDVAGALALDDK----LGRSTN 125
Query: 1221 QLSGGQKQRVAIARAFVR-------KAEIMLLDEATSALDAESERSVQEALDRACS---- 1269
QLSGG+ QRV +A ++ +++LLD+ ++LD + Q ALD+ S
Sbjct: 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDV----AQQSALDKILSALSQ 181
Query: 1270 -GKTTIVVAHRLS-TIRNAHVIAVIDDGKVAELGSHSHLL 1307
G ++ +H L+ T+R+AH ++ GK+ G +L
Sbjct: 182 QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 27/158 (17%)
Query: 508 LVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVGERGVQL 567
L Q+ FAT + + L + D E+ VA A + D ++G QL
Sbjct: 78 LSQQQTPPFATPVWHYLTLHQHDKTRTELLN--DVAGALAL--------DDKLGRSTNQL 127
Query: 568 SGGQKQRIAIARAMLK-----NPA--ILLLDEATSALDSESEKLVQEALDRFMI-----G 615
SGG+ QR+ +A +L+ NPA +LLLD+ ++LD Q ALD+ + G
Sbjct: 128 SGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQ----QSALDKILSALSQQG 183
Query: 616 RTTLVIAHRLS-TIRKADVVAVLQQGSVSEIGTHDELI 652
++ +H L+ T+R A +L+ G + G +E++
Sbjct: 184 LAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 97/209 (46%), Gaps = 33/209 (15%)
Query: 1104 LSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR--VMIDGKDIRKYNLKSLRRHM 1161
LS RAG+ L LVGP+G GKS+++A R +SG+ + G+ + ++ L H
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLA---RXAGXTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 1162 AIVPQEPC-LFASTIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKTFVGERGV 1220
A + Q+ FA+ ++ H L N +L D +G
Sbjct: 76 AYLSQQQTPPFATPVW------HYLTLHQHDKTRTELLNDVAGALALDDK----LGRSTN 125
Query: 1221 QLSGGQKQRVAIARAFVR-------KAEIMLLDEATSALDAESERSVQEALDRACS---- 1269
QLSGG+ QRV +A ++ +++LLDE ++LD + Q ALD+ S
Sbjct: 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDV----AQQSALDKILSALSQ 181
Query: 1270 -GKTTIVVAHRLS-TIRNAHVIAVIDDGK 1296
G + +H L+ T+R+AH ++ GK
Sbjct: 182 QGLAIVXSSHDLNHTLRHAHRAWLLKGGK 210
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 27/158 (17%)
Query: 508 LVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVGERGVQL 567
L Q+ FAT + + L + D E+ VA A + D ++G QL
Sbjct: 78 LSQQQTPPFATPVWHYLTLHQHDKTRTELLN--DVAGALAL--------DDKLGRSTNQL 127
Query: 568 SGGQKQRIAIARAMLK-----NPA--ILLLDEATSALDSESEKLVQEALDRFM--IGRTT 618
SGG+ QR+ +A +L+ NPA +LLLDE ++LD Q ALD+ + + +
Sbjct: 128 SGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ----QSALDKILSALSQQG 183
Query: 619 LVI---AHRLS-TIRKADVVAVLQQGSVSEIGTHDELI 652
L I +H L+ T+R A +L+ G G +E++
Sbjct: 184 LAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVL 221
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 78/179 (43%), Gaps = 27/179 (15%)
Query: 1109 RAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEP 1168
+ G+ + +VGP+G GK++ + + EP+ G++ D +A PQ
Sbjct: 310 KKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWD-------------LTVAYKPQ-- 354
Query: 1169 CLFASTIYENIAYGHXXXXXXXXXXXXRLANADKFISSL--PDGYKTFVGERGVQLSGGQ 1226
+ YE Y N++ + + L P G +LSGG+
Sbjct: 355 --YIKADYEGTVY------ELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGE 406
Query: 1227 KQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDR--ACSGKTTIVVAHRLSTI 1283
QRVAIA +R A+I LLDE ++ LD E +V A+ + KT +VV H + I
Sbjct: 407 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDVLXI 465
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 1217 ERGVQ-LSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDR-ACSGKTTI 1274
ER +Q LSGG+ QRVAIA A +R A DE +S LD + A+ R + GK+ +
Sbjct: 153 EREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVL 212
Query: 1275 VVAHRLSTI 1283
VV H L+ +
Sbjct: 213 VVEHDLAVL 221
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 562 ERGVQ-LSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTL 619
ER +Q LSGG+ QR+AIA A+L+N DE +S LD A+ R G++ L
Sbjct: 153 EREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVL 212
Query: 620 VIAHRLSTI 628
V+ H L+ +
Sbjct: 213 VVEHDLAVL 221
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 554 DGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM 613
D +D +V E LSGG+ QR+AIA +L++ I LLDE ++ LD E V A+
Sbjct: 393 DLYDREVNE----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLX 448
Query: 614 IG--RTTLVIAHRLSTI 628
+T LV+ H + I
Sbjct: 449 EKNEKTALVVEHDVLXI 465
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 101/220 (45%), Gaps = 33/220 (15%)
Query: 1104 LSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR--VMIDGKDIRKYNLKSLRRHM 1161
LS RAG+ L LVGP+G GKS+++A R +SG+ + G+ + ++ L H
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLA---RMAGMTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 1162 AIVPQEPC-LFASTIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKTFVGERGV 1220
A + Q+ FA+ ++ H L N +L D +G
Sbjct: 76 AYLSQQQTPPFATPVW------HYLTLHQHDKTRTELLNDVAGALALDDK----LGRSTN 125
Query: 1221 QLSGGQKQRVAIARAFVR-------KAEIMLLDEATSALDAESERSVQEALDRACS---- 1269
QLSGG+ QRV +A ++ +++LLD+ +LD + Q ALD+ S
Sbjct: 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDV----AQQSALDKILSALSQ 181
Query: 1270 -GKTTIVVAHRLS-TIRNAHVIAVIDDGKVAELGSHSHLL 1307
G ++ +H L+ T+R+AH ++ GK+ G +L
Sbjct: 182 QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 27/158 (17%)
Query: 508 LVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVGERGVQL 567
L Q+ FAT + + L + D E+ VA A + D ++G QL
Sbjct: 78 LSQQQTPPFATPVWHYLTLHQHDKTRTELLN--DVAGALAL--------DDKLGRSTNQL 127
Query: 568 SGGQKQRIAIARAMLK-----NPA--ILLLDEATSALDSESEKLVQEALDRFMI-----G 615
SGG+ QR+ +A +L+ NPA +LLLD+ +LD Q ALD+ + G
Sbjct: 128 SGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQ----QSALDKILSALSQQG 183
Query: 616 RTTLVIAHRLS-TIRKADVVAVLQQGSVSEIGTHDELI 652
++ +H L+ T+R A +L+ G + G +E++
Sbjct: 184 LAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp-
Binding Cassette Of An Abc Transporter
Length = 257
Score = 53.1 bits (126), Expect = 9e-07, Method: Composition-based stats.
Identities = 52/221 (23%), Positives = 90/221 (40%), Gaps = 18/221 (8%)
Query: 1104 LSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAI 1163
+S+ G ++GP+G GKS++I ++ F + GRV + KDI L H I
Sbjct: 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL-YHYGI 84
Query: 1164 V-----PQEPCLFASTIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKT----- 1213
V PQ L T+ EN+ G K + +K
Sbjct: 85 VRTFQTPQP--LKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 1214 ---FVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSV-QEALDRACS 1269
+ +LSGGQ + V I RA + +++++DE + + + L+
Sbjct: 143 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 202
Query: 1270 GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309
G T +++ HRL + N + V+ +G++ G +KN
Sbjct: 203 GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 58/228 (25%), Positives = 100/228 (43%), Gaps = 22/228 (9%)
Query: 442 EVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDIKSLKLRW 501
E + L+ S++V G + +I F G+V + DI + +
Sbjct: 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 78
Query: 502 LRQQIGLVS--QEPA-LFATTIKENILLGR---PDADLNEI-------EEAARVANAYSF 548
L G+V Q P L T+ EN+L+G ++ LN + +E V A+
Sbjct: 79 L-YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKI 137
Query: 549 I--IKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSAL-DSESEKLV 605
+ +KL +D + GE LSGGQ + + I RA++ NP ++++DE + + + +
Sbjct: 138 LEFLKLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIF 193
Query: 606 QEALDRFMIGRTTLVIAHRLSTI-RKADVVAVLQQGSVSEIGTHDELI 652
L+ G T L+I HRL + D + V+ G + G +E I
Sbjct: 194 NHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEI 241
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 58/228 (25%), Positives = 100/228 (43%), Gaps = 22/228 (9%)
Query: 442 EVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDIKSLKLRW 501
E + L+ S++V G + +I F G+V + DI + +
Sbjct: 19 EFKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 78
Query: 502 LRQQIGLVS--QEPA-LFATTIKENILLGR---PDADLNEI-------EEAARVANAYSF 548
L G+V Q P L T+ EN+L+G ++ LN + +E V A+
Sbjct: 79 L-YHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKI 137
Query: 549 I--IKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSAL-DSESEKLV 605
+ +KL +D + GE LSGGQ + + I RA++ NP ++++DE + + + +
Sbjct: 138 LEFLKLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIF 193
Query: 606 QEALDRFMIGRTTLVIAHRLSTI-RKADVVAVLQQGSVSEIGTHDELI 652
L+ G T L+I HRL + D + V+ G + G +E I
Sbjct: 194 NHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEI 241
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 52/221 (23%), Positives = 90/221 (40%), Gaps = 18/221 (8%)
Query: 1104 LSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAI 1163
+S+ G ++GP+G GKS++I ++ F + GRV + KDI L H I
Sbjct: 26 VSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL-YHYGI 84
Query: 1164 V-----PQEPCLFASTIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKT----- 1213
V PQ L T+ EN+ G K + +K
Sbjct: 85 VRTFQTPQP--LKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 1214 ---FVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSV-QEALDRACS 1269
+ +LSGGQ + V I RA + +++++DE + + + L+
Sbjct: 143 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 202
Query: 1270 GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309
G T +++ HRL + N + V+ +G++ G +KN
Sbjct: 203 GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette
From An Abc Transporter
Length = 257
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 51/221 (23%), Positives = 90/221 (40%), Gaps = 18/221 (8%)
Query: 1104 LSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAI 1163
+S+ G ++GP+G GKS++I ++ F + GRV + KDI L H I
Sbjct: 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL-YHYGI 84
Query: 1164 V-----PQEPCLFASTIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKT----- 1213
V PQ L T+ EN+ G K + +K
Sbjct: 85 VRTFQTPQP--LKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 1214 ---FVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSV-QEALDRACS 1269
+ +LSGGQ + V I RA + +++++D+ + + + L+
Sbjct: 143 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAK 202
Query: 1270 GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309
G T +++ HRL + N + V+ +G++ G +KN
Sbjct: 203 GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 57/228 (25%), Positives = 100/228 (43%), Gaps = 22/228 (9%)
Query: 442 EVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDIKSLKLRW 501
E + L+ S++V G + +I F G+V + DI + +
Sbjct: 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 78
Query: 502 LRQQIGLVS--QEPA-LFATTIKENILLGR---PDADLNEI-------EEAARVANAYSF 548
L G+V Q P L T+ EN+L+G ++ LN + +E V A+
Sbjct: 79 L-YHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKI 137
Query: 549 I--IKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSAL-DSESEKLV 605
+ +KL +D + GE LSGGQ + + I RA++ NP ++++D+ + + + +
Sbjct: 138 LEFLKLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIF 193
Query: 606 QEALDRFMIGRTTLVIAHRLSTI-RKADVVAVLQQGSVSEIGTHDELI 652
L+ G T L+I HRL + D + V+ G + G +E I
Sbjct: 194 NHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEI 241
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 105/253 (41%), Gaps = 38/253 (15%)
Query: 1094 SRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALV--QRFYEPSSGRVMIDGKDIRK 1151
S D I R LSL G+ A++GP+G GKS++ A + + YE + G V GKD+
Sbjct: 10 SVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL-- 67
Query: 1152 YNLKSLRRHMAIVPQEPCLFASTIYENIAYGHXXXXXXXXXXXXRLANA----------D 1201
+A+ P++ I+ Y NA D
Sbjct: 68 ---------LALSPEDRA--GEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLD 116
Query: 1202 KF---------ISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSAL 1252
+F I+ L V SGG+K+R I + V + E+ +LDE+ S L
Sbjct: 117 RFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGL 176
Query: 1253 DAESERSVQEALDRACSGKTT-IVVAH--RLSTIRNAHVIAVIDDGKVAELGSHSHLLKN 1309
D ++ + V + ++ GK + I+V H R+ + V+ G++ + G + L+K
Sbjct: 177 DIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT-LVKQ 235
Query: 1310 NPDGCYARMIQLQ 1322
+ Y + + Q
Sbjct: 236 LEEQGYGWLTEQQ 248
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 549 IIKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEA 608
++K+P+ T+ V SGG+K+R I + + P + +LDE+ S LD ++ K+V +
Sbjct: 130 LLKMPEDLLTR--SVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADG 187
Query: 609 LDRFMIGRTTLVIA---HRLSTIRKADVVAVLQQGSVSEIG 646
++ G+ + +I R+ K D V VL QG + + G
Sbjct: 188 VNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 228
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
Length = 267
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 104/250 (41%), Gaps = 38/250 (15%)
Query: 1097 DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALV--QRFYEPSSGRVMIDGKDIRKYNL 1154
D I R LSL G+ A++GP+G GKS++ A + + YE + G V GKD+
Sbjct: 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL----- 86
Query: 1155 KSLRRHMAIVPQEPCLFASTIYENIAYGHXXXXXXXXXXXXRLANA----------DKF- 1203
+A+ P++ I+ Y NA D+F
Sbjct: 87 ------LALSPEDRA--GEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFD 138
Query: 1204 --------ISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAE 1255
I+ L V SGG+K+R I + V + E+ +LDE+ S LD +
Sbjct: 139 FQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDID 198
Query: 1256 SERSVQEALDRACSGKTT-IVVAH--RLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPD 1312
+ + V + ++ GK + I+V H R+ + V+ G++ + G + L+K +
Sbjct: 199 ALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT-LVKQLEE 257
Query: 1313 GCYARMIQLQ 1322
Y + + Q
Sbjct: 258 QGYGWLTEQQ 267
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 549 IIKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEA 608
++K+P+ T+ V SGG+K+R I + + P + +LDE+ S LD ++ K+V +
Sbjct: 149 LLKMPEDLLTR--SVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADG 206
Query: 609 LDRFMIGRTTLVIA---HRLSTIRKADVVAVLQQGSVSEIG 646
++ G+ + +I R+ K D V VL QG + + G
Sbjct: 207 VNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 247
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 116/260 (44%), Gaps = 17/260 (6%)
Query: 1080 RGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSS 1139
RG L +D + I + +S + G L G +G GK++++ ++ + +S
Sbjct: 16 RGSHXLIQLDQIGRXKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATS 75
Query: 1140 GRVMIDGKDIRK--YNLKSLRRHMAIVPQ---EPCLFASTIYENIAYGHXXXXXXXXXXX 1194
G V + GK K Y+ +++R+H+ V E + + + G
Sbjct: 76 GTVNLFGKXPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDID 135
Query: 1195 XRLAN-ADKFISSLPDGYKT--FVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSA 1251
+ N A + + + K ++G LS G+KQRV IARA + ++++LDE +
Sbjct: 136 DEIRNEAHQLLKLVGXSAKAQQYIG----YLSTGEKQRVXIARALXGQPQVLILDEPAAG 191
Query: 1252 LD---AESERSVQEALDRACSGKTTIVVAHRLSTIR-NAHVIAVIDDGKVAELGSHSHLL 1307
LD ES S+ ++L + I V H + I N I ++ DG+ + G+ +L
Sbjct: 192 LDFIARESLLSILDSLSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251
Query: 1308 KN-NPDGCYARMIQLQRFTH 1326
+ N + + + +QR+ +
Sbjct: 252 TSENXSRFFQKNVAVQRWNN 271
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 567 LSGGQKQRIAIARAMLKNPAILLLDEATSALD 598
LS G+KQR+ IARA+ P +L+LDE + LD
Sbjct: 162 LSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 37/198 (18%), Positives = 88/198 (44%), Gaps = 16/198 (8%)
Query: 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR 1141
++E++ + Y D P+ +++ G + GP+G GK++++ + + +P G
Sbjct: 10 KLEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 65
Query: 1142 VMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHXXXXXXXXXXXXRLANAD 1201
++ +G I K ++ + +P+E + E+ N +
Sbjct: 66 IIYNGVPITK-----VKGKIFFLPEEIIVPRKISVED-------YLKAVASLYGVKVNKN 113
Query: 1202 KFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQ 1261
+ + +L + ++ +LS G +RV +A + AEI +LD+ A+D +S+ V
Sbjct: 114 EIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVL 173
Query: 1262 EALDRACSGKTTIVVAHR 1279
+++ K ++++ R
Sbjct: 174 KSILEILKEKGIVIISSR 191
Score = 34.3 bits (77), Expect = 0.45, Method: Composition-based stats.
Identities = 42/202 (20%), Positives = 85/202 (42%), Gaps = 26/202 (12%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQV 487
+E++ + Y +P +L ++T+ G + I + P G++
Sbjct: 11 LEIRDLSVGY-DKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 488 LLDGHDIKSLK--LRWLRQQIGL---VSQEPALFATTIKENILLGRPDADLNEIEEAARV 542
+ +G I +K + +L ++I + +S E L A + + + NEI +A
Sbjct: 67 IYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNK-----NEIMDALES 121
Query: 543 ANAYSFIIKLPDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESE 602
KL GE LS G +R+ +A +L N I +LD+ A+D +S+
Sbjct: 122 VEVLDLKKKL--------GE----LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 169
Query: 603 KLVQEALDRFMIGRTTLVIAHR 624
V +++ + + ++I+ R
Sbjct: 170 HKVLKSILEILKEKGIVIISSR 191
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 1215 VGERGVQLSGGQKQRVAIARAFVRK---AEIMLLDEATSALDAESERSVQEALDRACS-G 1270
+G+ LSGG+ QR+ +A ++ + +LDE T L E R + E L R G
Sbjct: 799 LGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRG 858
Query: 1271 KTTIVVAHRLSTIRNA-HVIAVIDDG 1295
T IV+ H L I+NA H+I + +G
Sbjct: 859 NTVIVIEHNLDVIKNADHIIDLGPEG 884
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 11/117 (9%)
Query: 559 QVGERGVQLSGGQKQRIAIARAMLKNP---AILLLDEATSALDSESEKLVQEALDRFMI- 614
++G+ LSGG+ QRI +A + K + +LDE T L E + + E L R +
Sbjct: 798 KLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR 857
Query: 615 GRTTLVIAHRLSTIRKADVVAVL------QQGSVSEIGTHDELIAKGENGVYAKLIR 665
G T +VI H L I+ AD + L + G + GT +E IAK + + ++
Sbjct: 858 GNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEE-IAKNPHSYTGRFLK 913
Score = 36.6 bits (83), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 49/100 (49%), Gaps = 10/100 (10%)
Query: 1222 LSGGQKQRVAIARAFVR--KAEIMLLDEATSALDA-ESERSVQEALDRACSGKTTIVVAH 1278
LSGG+ QR+ +A I +LDE T L ++ER ++ G T IVV H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 1279 RLSTIRNA-HVIAV-----IDDGKVAELGSHSHLLKNNPD 1312
IRNA H+I + + G+V G+ LLK NPD
Sbjct: 525 DEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLK-NPD 563
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 15/94 (15%)
Query: 567 LSGGQKQRIAIARAMLK--NPAILLLDEATSALDS-ESEKLVQEALDRFMIGRTTLVIAH 623
LSGG+ QRI +A + I +LDE T L ++E+L++ +G T +V+ H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 624 RLSTIRKADVV------------AVLQQGSVSEI 645
IR AD + V+ QG+V E+
Sbjct: 525 DEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDEL 558
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 12/128 (9%)
Query: 559 QVGERGVQLSGGQKQRIAIARAMLKNP---AILLLDEATSALDSESEKLVQEALDRFMI- 614
++G+ LSGG+ QR+ +A + + + +LDE T+ L + + + L R +
Sbjct: 838 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 615 GRTTLVIAHRLSTIRKADVVAVL------QQGSVSEIGTHDEL--IAKGENGVYAKLIRM 666
G T LVI H L I+ AD + L + G + +GT +E+ + + G Y K I
Sbjct: 898 GDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLKPILE 957
Query: 667 QEAAHETA 674
++ A A
Sbjct: 958 RDRARXQA 965
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 1215 VGERGVQLSGGQKQRVAIARAFVRKAE---IMLLDEATSALDAESERSVQEALDRAC-SG 1270
+G+ LSGG+ QRV +A R++ + +LDE T+ L + + + L R +G
Sbjct: 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 898
Query: 1271 KTTIVVAHRLSTIRNAHVI 1289
T +V+ H L I+ A I
Sbjct: 899 DTVLVIEHNLDVIKTADYI 917
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 567 LSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAH 623
LSGG K ++A+ARA+L+N ILLLDE T+ LD+ + + L+ G T++ I+H
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN--TCGITSITISH 603
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 1222 LSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAH 1278
LSGG K ++A+ARA +R A+I+LLDE T+ LD + + L+ C G T+I ++H
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN-TC-GITSITISH 603
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 64/131 (48%), Gaps = 10/131 (7%)
Query: 1044 DFIKGGRAMRSVFDLLDRKTEIEPDDPDATP-VPDRLRGEVELKHVDFSYP--SRPDIPI 1100
+F+K A ++ +L + E + +P V + + V++ +++F YP S+P I
Sbjct: 632 EFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQI-- 689
Query: 1101 FRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKD----IRKYNLKS 1156
D++ + +A++GP+G GKS++I ++ P+SG V I+++
Sbjct: 690 -TDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAH 748
Query: 1157 LRRHMAIVPQE 1167
+ H+ P E
Sbjct: 749 IESHLDKTPSE 759
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 567 LSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAH 623
LSGGQK ++ +A + P +++LDE T+ LD +S + +AL F G ++I H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITH 956
Score = 36.6 bits (83), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1222 LSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLS 1281
LSGGQK ++ +A ++ +++LDE T+ LD +S ++ +AL G I++ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 1282 TIRN-AHVIAVIDDGKVAELGSH 1303
+N + + DG++ G +
Sbjct: 960 FTKNLTEEVWAVKDGRMTPSGHN 982
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 567 LSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAH 623
LSGG K ++A+ARA+L+N ILLLDE T+ LD+ + + L+ G T++ I+H
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN--TCGITSITISH 603
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 1222 LSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAH 1278
LSGG K ++A+ARA +R A+I+LLDE T+ LD + + L+ C G T+I ++H
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN-TC-GITSITISH 603
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 10/131 (7%)
Query: 1044 DFIKGGRAMRSVFDLLDRKTEIEPDDPDATP-VPDRLRGEVELKHVDFSYP--SRPDIPI 1100
+F+K A ++ +L + E + +P V + + V++ + +F YP S+P I
Sbjct: 632 EFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNXEFQYPGTSKPQI-- 689
Query: 1101 FRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKD----IRKYNLKS 1156
D++ + +A++GP+G GKS++I ++ P+SG V I+++
Sbjct: 690 -TDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAH 748
Query: 1157 LRRHMAIVPQE 1167
+ H+ P E
Sbjct: 749 IESHLDKTPSE 759
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 567 LSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAH 623
LSGGQK ++ +A + P +++LDE T+ LD +S + +AL F G ++I H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITH 956
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 1222 LSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLS 1281
LSGGQK ++ +A ++ +++LDE T+ LD +S ++ +AL G I++ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 1282 TIRN-AHVIAVIDDGKVAELGSH 1303
+N + + DG+ G +
Sbjct: 960 FTKNLTEEVWAVKDGRXTPSGHN 982
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 567 LSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAH 623
LSGG K ++A+ARA+L+N ILLLDE T+ LD+ + + L+ G T++ I+H
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN--TCGITSITISH 597
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 1222 LSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAH 1278
LSGG K ++A+ARA +R A+I+LLDE T+ LD + + L+ C G T+I ++H
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN-TC-GITSITISH 597
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 10/131 (7%)
Query: 1044 DFIKGGRAMRSVFDLLDRKTEIEPDDPDATP-VPDRLRGEVELKHVDFSYP--SRPDIPI 1100
+F+K A ++ +L + E + +P V + + V++ + +F YP S+P I
Sbjct: 626 EFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNXEFQYPGTSKPQI-- 683
Query: 1101 FRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKD----IRKYNLKS 1156
D++ + +A++GP+G GKS++I ++ P+SG V I+++
Sbjct: 684 -TDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAH 742
Query: 1157 LRRHMAIVPQE 1167
+ H+ P E
Sbjct: 743 IESHLDKTPSE 753
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 567 LSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAH 623
LSGGQK ++ +A + P +++LDE T+ LD +S + +AL F G ++I H
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITH 950
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 1222 LSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLS 1281
LSGGQK ++ +A ++ +++LDE T+ LD +S ++ +AL G I++ H
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 953
Query: 1282 TIRN-AHVIAVIDDGKVAELGSH 1303
+N + + DG+ G +
Sbjct: 954 FTKNLTEEVWAVKDGRXTPSGHN 976
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 19/134 (14%)
Query: 559 QVGERGVQLSGGQKQRIAIARAMLKNP---AILLLDEATSALDSESEKLVQEALDRFMI- 614
++G+ LSGG+ QR+ +A + + + +LDE T+ L + + + L R +
Sbjct: 838 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 615 GRTTLVIAHRLSTIRKADVVAVL------QQGSVSEIGTHDEL--IAKGENGVYAKLI-- 664
G T LVI H L I+ AD + L + G + +GT +E+ + + G Y K I
Sbjct: 898 GDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLKPILE 957
Query: 665 ----RMQEAAHETA 674
RMQ A +E A
Sbjct: 958 RDRARMQ-ARYEAA 970
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 1215 VGERGVQLSGGQKQRVAIARAFVRKAE---IMLLDEATSALDAESERSVQEALDRAC-SG 1270
+G+ LSGG+ QRV +A R++ + +LDE T+ L + + + L R +G
Sbjct: 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 898
Query: 1271 KTTIVVAHRLSTIRNAHVI 1289
T +V+ H L I+ A I
Sbjct: 899 DTVLVIEHNLDVIKTADYI 917
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 19/134 (14%)
Query: 559 QVGERGVQLSGGQKQRIAIARAMLKNP---AILLLDEATSALDSESEKLVQEALDRFMI- 614
++G+ LSGG+ QR+ +A + + + +LDE T+ L + + + L R +
Sbjct: 536 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 595
Query: 615 GRTTLVIAHRLSTIRKADVVAVL------QQGSVSEIGTHDEL--IAKGENGVYAKLI-- 664
G T LVI H L I+ AD + L + G + +GT +E+ + + G Y K I
Sbjct: 596 GDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLKPILE 655
Query: 665 ----RMQEAAHETA 674
RMQ A +E A
Sbjct: 656 RDRARMQ-ARYEAA 668
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 1215 VGERGVQLSGGQKQRVAIARAFVRKAE---IMLLDEATSALDAESERSVQEALDRAC-SG 1270
+G+ LSGG+ QRV +A R++ + +LDE T+ L + + + L R +G
Sbjct: 537 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 596
Query: 1271 KTTIVVAHRLSTIRNAHVI 1289
T +V+ H L I+ A I
Sbjct: 597 DTVLVIEHNLDVIKTADYI 615
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 79/196 (40%), Gaps = 30/196 (15%)
Query: 1090 FSYPSRPDIPIFRDLSLRARAGK-----TLALVGPSGCGKSSVIALVQRFYEPSSGRVMI 1144
FSYPS D L G+ L ++G +G GK+++I L+ +P
Sbjct: 354 FSYPSLKKTQ--GDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD------ 405
Query: 1145 DGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHXXXXXXXXXXXXRLANADKFI 1204
+G+DI K N+ + I P+ P ++ I G L D
Sbjct: 406 EGQDIPKLNVSM--KPQKIAPKFPGTVRQLFFKKIR-GQFLNPQFQTDVVKPLRIDD--- 459
Query: 1205 SSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEAL 1264
+ + LSGG+ QRVAI A A+I L+DE ++ LD+E + +
Sbjct: 460 ---------IIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVI 510
Query: 1265 DRAC--SGKTTIVVAH 1278
R + KT +V H
Sbjct: 511 RRFILHNKKTAFIVEH 526
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 553 PDGFDTQVGERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRF 612
P D + + LSGG+ QR+AI A+ I L+DE ++ LDSE + + + RF
Sbjct: 454 PLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRF 513
Query: 613 MI--GRTTLVIAH 623
++ +T ++ H
Sbjct: 514 ILHNKKTAFIVEH 526
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 84/199 (42%), Gaps = 37/199 (18%)
Query: 1108 ARAGKTLALVGPSGCGKSSVIALVQ--------RFYEPSSGRVMID---GKDIRKYNLKS 1156
R G+ L LVG +G GKS+ + ++ RF +P + +I G +++ Y K
Sbjct: 100 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKM 159
Query: 1157 LRRHMA--IVPQEPCLFASTIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKTF 1214
L + I PQ + I I R+ + P+ K +
Sbjct: 160 LEDDIKAIIKPQ----YVDNIPRAI---KGPVQKVGELLKLRMEKS-------PEDVKRY 205
Query: 1215 VG--------ERGVQ-LSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALD 1265
+ +R ++ LSGG+ QR AI + V++A++ + DE +S LD + + + +
Sbjct: 206 IKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIR 265
Query: 1266 RACSG-KTTIVVAHRLSTI 1283
+ K I V H LS +
Sbjct: 266 SLLAPTKYVICVEHDLSVL 284
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 566 QLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIA--H 623
+LSGG+ QR AI + ++ + + DE +S LD + ++L + R ++ T VI H
Sbjct: 221 KLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVK-QRLNAAQIIRSLLAPTKYVICVEH 279
Query: 624 RLSTI 628
LS +
Sbjct: 280 DLSVL 284
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
Length = 538
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 1222 LSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRL 1280
LSGG QR+ +A + +R+A++ + D+ +S LD ++ +A+ K IVV H L
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDL 197
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 1222 LSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGK--TTIVVAHR 1279
LSGG+ Q++ IA ++A++ +LD+ +S LD E V +A+ R + T ++ H
Sbjct: 386 LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHD 445
Query: 1280 LS 1281
LS
Sbjct: 446 LS 447
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 567 LSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGR--TTLVIAHR 624
LSGG+ Q++ IA + K + +LD+ +S LD E +V +A+ R R T +I H
Sbjct: 386 LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHD 445
Query: 625 LS 626
LS
Sbjct: 446 LS 447
Score = 33.9 bits (76), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 32/59 (54%)
Query: 567 LSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRL 625
LSGG QR+ +A ++L+ + + D+ +S LD + +A+ + + +V+ H L
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDL 197
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 54/101 (53%), Gaps = 7/101 (6%)
Query: 559 QVGERGVQLSGGQKQRIAIA---RAMLKNPAILLLDEATSAL-DSESEKLVQEALDRFMI 614
++G+ +LSGG+ QRI +A R + + +LDE T+ L ++ E+L ++ +
Sbjct: 723 RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA 782
Query: 615 GRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKG 655
G T + + H++ + +D V + G+ + G L+A+G
Sbjct: 783 GNTVIAVEHKMQVVAASDWVLDIGPGAGEDGG---RLVAQG 820
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 1215 VGERGVQLSGGQKQRVAIA---RAFVRKAEIMLLDEATSAL-DAESERSVQEALDRACSG 1270
+G+ +LSGG+ QR+ +A R R + +LDE T+ L A+ ER ++ + +G
Sbjct: 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAG 783
Query: 1271 KTTIVVAHRLSTI 1283
T I V H++ +
Sbjct: 784 NTVIAVEHKMQVV 796
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 91/223 (40%), Gaps = 14/223 (6%)
Query: 445 ILNNFSLTVPAGKTIALXXXXXXXXXXXXXLI--ERFYDPTSGQVLLDGHDIKSLKL-RW 501
IL +L VP G+ AL ++ + Y G++LLDG +I L
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 502 LRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVG 561
R+ + L Q P N L A L A ++L D +D
Sbjct: 78 ARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLD-WDESYL 136
Query: 562 ERGVQ--LSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRT-- 617
R + SGG+K+R I + ++ P +LDE S LD ++ K+V ++ M G
Sbjct: 137 SRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNA-MRGPNFG 195
Query: 618 TLVIAH--RLSTIRKADVVAVLQQGSVSEIGTHD---ELIAKG 655
LVI H R+ + D V V+ G V G + EL AKG
Sbjct: 196 ALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALELEAKG 238
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 88/211 (41%), Gaps = 9/211 (4%)
Query: 1100 IFRDLSLRARAGKTLALVGPSGCGKSSVIALV--QRFYEPSSGRVMIDGKDIRKYNL-KS 1156
I + ++L G+ AL+GP+G GKS++ ++ Y G +++DG++I + + +
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 1157 LRRHMAIVPQEPCLFASTIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKTFVG 1216
R+ + + Q P N K L D ++++
Sbjct: 78 ARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLS 137
Query: 1217 ER-GVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKT--T 1273
SGG+K+R I + V + +LDE S LD ++ + V ++ A G
Sbjct: 138 RYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVN-AMRGPNFGA 196
Query: 1274 IVVAH--RLSTIRNAHVIAVIDDGKVAELGS 1302
+V+ H R+ + V+ DG+V G
Sbjct: 197 LVITHYQRILNYIQPDKVHVMMDGRVVATGG 227
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 38.9 bits (89), Expect = 0.018, Method: Composition-based stats.
Identities = 38/173 (21%), Positives = 75/173 (43%), Gaps = 14/173 (8%)
Query: 1111 GKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCL 1170
G+ + ++GP+G GK++++ + P SG + I+G ++RK +++ R+ +P+ +
Sbjct: 30 GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRK--IRNYIRYSTNLPEAYEI 86
Query: 1171 FASTIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKTFVGERGVQLSGGQKQRV 1230
+ +I Y + + A K + + + +LS GQ V
Sbjct: 87 GVTV--NDIVYLYEELKGLDRDLFLEMLKALKLGEEI-------LRRKLYKLSAGQSVLV 137
Query: 1231 AIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTI 1283
+ A + EI+ LDE +DA + + GK I+V H L +
Sbjct: 138 RTSLALASQPEIVGLDEPFENVDAARRHVISRYIKE--YGKEGILVTHELDML 188
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 12/108 (11%)
Query: 536 IEEAAR----VANAYSFIIKLPD---GFDTQVGERGVQLSGGQKQRIAIARAMLKNP--- 585
IEEAA +A + ++ L D G+ ++G+ LSGG+ QR+ +A + K
Sbjct: 827 IEEAAEFFEPIAGVHRYLRTLVDVGLGY-VRLGQPAPTLSGGEAQRVKLASELQKRSTGR 885
Query: 586 AILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRKAD 632
+ +LDE T+ L + + + ++ + G T +VI H L I+ +D
Sbjct: 886 TVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSD 933
Score = 37.0 bits (84), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 1197 LANADKFISSLPD---GYKTFVGERGVQLSGGQKQRVAIARAFVRKA---EIMLLDEATS 1250
+A +++ +L D GY +G+ LSGG+ QRV +A +++ + +LDE T+
Sbjct: 837 IAGVHRYLRTLVDVGLGY-VRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTT 895
Query: 1251 ALDAESERSVQEALDRACS-GKTTIVVAHRLSTIRNA 1286
L + R + ++ G T IV+ H L I+ +
Sbjct: 896 GLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTS 932
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
Query: 1222 LSGGQKQRVAIARAFVRK--AEIMLLDEATSALDAESERSVQEALDRACS-GKTTIVVAH 1278
LSGG+ QR+ +A + +LDE + L R + E L R G T IVV H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 1279 RLSTIRNAHVIAVIDD------GKVAELGSHSHLLKNN 1310
TI +A I I G++ G + LL+N
Sbjct: 582 DEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRNK 619
>pdb|2FLQ|A Chain A, Crystal Structure Of Nitric Oxide Synthase From Geobacillus
Stearothermophilus (Atcc 12980) Complexed With L-Arginine
pdb|2FLQ|B Chain B, Crystal Structure Of Nitric Oxide Synthase From Geobacillus
Stearothermophilus (Atcc 12980) Complexed With L-Arginine
Length = 375
Score = 37.0 bits (84), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 1048 GGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLR 1107
G + ++ FD+L ++ P TP+P L EV ++H P+ P FRDL L+
Sbjct: 165 GWKGEKTPFDVLPLVIQVGGQKPVWTPIPKELVLEVPIEH--------PEFPWFRDLQLK 216
Query: 1108 ARA 1110
A
Sbjct: 217 WYA 219
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 1222 LSGGQKQRVAIARAF----VRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVA 1277
LSGG++ AIA F VR +LDE +ALD + + L + S IV+
Sbjct: 329 LSGGERALTAIALLFSILKVRPVPFCVLDEVEAALDEANVFRFAQYLKKYSSDTQFIVIT 388
Query: 1278 HRLSTIRNAHVI 1289
HR T+ A V+
Sbjct: 389 HRKGTMEEADVL 400
Score = 33.5 bits (75), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 567 LSGGQKQRIAIAR--AMLK-NPA-ILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIA 622
LSGG++ AIA ++LK P +LDE +ALD + + L ++ +VI
Sbjct: 329 LSGGERALTAIALLFSILKVRPVPFCVLDEVEAALDEANVFRFAQYLKKYSSDTQFIVIT 388
Query: 623 HRLSTIRKADVV--AVLQQGSVSEI 645
HR T+ +ADV+ +Q+ VS++
Sbjct: 389 HRKGTMEEADVLYGVTMQESGVSKV 413
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 14/113 (12%)
Query: 546 YSFIIKLPDGFDTQV-GERGV----QLSGGQK------QRIAIARAMLKNPA-ILLLDEA 593
YSF+ +L F+ +V GV LSGG++ R+AIA A++ N ++LDE
Sbjct: 256 YSFV-ELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEP 314
Query: 594 TSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVA-VLQQGSVSEI 645
T LD + E + ++I H ADV+ V + G+VS++
Sbjct: 315 TVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINVKKDGNVSKV 367
Score = 32.3 bits (72), Expect = 1.9, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 1222 LSGGQK------QRVAIARAFV-RKAEIMLLDEATSALDAESERSVQEALDRACSGKTTI 1274
LSGG++ R+AIA A + + E ++LDE T LD + E + S I
Sbjct: 281 LSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMI 340
Query: 1275 VVAHRLSTIRNAHVIA-VIDDGKVAEL 1300
++ H A VI V DG V+++
Sbjct: 341 IITHHRELEDVADVIINVKKDGNVSKV 367
>pdb|1ZZQ|A Chain A, Rat Nnos D597n Mutant With L-N(Omega)-Nitroarginine-(4r)-
Amino-L-Proline Amide Bound
pdb|1ZZQ|B Chain B, Rat Nnos D597n Mutant With L-N(Omega)-Nitroarginine-(4r)-
Amino-L-Proline Amide Bound
Length = 420
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 1047 KGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSL 1106
+G +A R FD+L + +DP+ +P L EV ++H F + F+DL L
Sbjct: 210 QGWKAPRGRFDVLPLLLQANGNDPELFQIPPELVLEVPIRHPKFDW--------FKDLGL 261
Query: 1107 R 1107
+
Sbjct: 262 K 262
>pdb|1ZZR|A Chain A, Rat Nnos D597nM336V DOUBLE MUTANT WITH
L-N(Omega)-Nitroarginine-(4r)- Amino-L-Proline Amide
Bound
pdb|1ZZR|B Chain B, Rat Nnos D597nM336V DOUBLE MUTANT WITH
L-N(Omega)-Nitroarginine-(4r)- Amino-L-Proline Amide
Bound
pdb|1ZZU|A Chain A, Rat Nnos D597nM336V DOUBLE MUTANT WITH
L-N(Omega)-Nitroarginine-2,4- L-Diaminobutyric Amide
Bound
pdb|1ZZU|B Chain B, Rat Nnos D597nM336V DOUBLE MUTANT WITH
L-N(Omega)-Nitroarginine-2,4- L-Diaminobutyric Amide
Bound
Length = 420
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 1047 KGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSL 1106
+G +A R FD+L + +DP+ +P L EV ++H F + F+DL L
Sbjct: 210 QGWKAPRGRFDVLPLLLQANGNDPELFQIPPELVLEVPIRHPKFDW--------FKDLGL 261
Query: 1107 R 1107
+
Sbjct: 262 K 262
>pdb|3JX0|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase D597n Mutant
Domain In Complex With
N1-{(3's,4's)-4'-[(6"-Amino-4"-Methy
2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorophenethyl)ethan Diamine
pdb|3JX0|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase D597n Mutant
Domain In Complex With
N1-{(3's,4's)-4'-[(6"-Amino-4"-Methy
2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorophenethyl)ethan Diamine
pdb|3JX1|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase D597n Mutant
Domain In Complex With
N1-{(3'r,4'r)-4'-[(6"-Amino-4"-Methy
2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorophenethyl)ethan Diamine
pdb|3JX1|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase D597n Mutant
Domain In Complex With
N1-{(3'r,4'r)-4'-[(6"-Amino-4"-Methy
2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorophenethyl)ethan Diamine
pdb|3N62|A Chain A, Structure Of Neuronal Nitric Oxide Synthase D597n Mutant
Heme Domain In Complex With
6,6'-(2,2'-(Pyridine-3,5-Diyl)bis(Ethane-2,1-Diyl))
Bis(4-Methylpyridin-2-Amine)
pdb|3N62|B Chain B, Structure Of Neuronal Nitric Oxide Synthase D597n Mutant
Heme Domain In Complex With
6,6'-(2,2'-(Pyridine-3,5-Diyl)bis(Ethane-2,1-Diyl))
Bis(4-Methylpyridin-2-Amine)
pdb|3N64|A Chain A, Structure Of Neuronal Nitric Oxide Synthase D597n Mutant
Heme Domain In Complex With
6,6'-(2,2'-(5-Amino-1,3-Phenylene)bis(Ethane-2,1-
Diyl))bis(4-Methylpyridin-2-Amine)
pdb|3N64|B Chain B, Structure Of Neuronal Nitric Oxide Synthase D597n Mutant
Heme Domain In Complex With
6,6'-(2,2'-(5-Amino-1,3-Phenylene)bis(Ethane-2,1-
Diyl))bis(4-Methylpyridin-2-Amine)
Length = 422
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 1047 KGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSL 1106
+G +A R FD+L + +DP+ +P L EV ++H F + F+DL L
Sbjct: 212 QGWKAPRGRFDVLPLLLQANGNDPELFQIPPELVLEVPIRHPKFDW--------FKDLGL 263
Query: 1107 R 1107
+
Sbjct: 264 K 264
>pdb|1P6K|A Chain A, Rat Neuronal Nos D597n Mutant Heme Domain With L-N(Omega)-
Nitroarginine-2,4-L-Diaminobutyric Amide Bound
pdb|1P6K|B Chain B, Rat Neuronal Nos D597n Mutant Heme Domain With L-N(Omega)-
Nitroarginine-2,4-L-Diaminobutyric Amide Bound
Length = 421
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 1047 KGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSL 1106
+G +A R FD+L + +DP+ +P L EV ++H F + F+DL L
Sbjct: 212 QGWKAPRGRFDVLPLLLQANGNDPELFQIPPELVLEVPIRHPKFDW--------FKDLGL 263
Query: 1107 R 1107
+
Sbjct: 264 K 264
>pdb|3JX6|A Chain A, Structure Of Neuronal Nitric Oxide Synthase D597nM336VY706
Heme Domain Complexed With N1-[(3' R,4'
R)-4'-((6"-Amino-4"
Methylpyridin-2"-Yl)methyl)pyrrolidin-3'-Yl]-N2-(3'-
Fluorop Ethane-1,2-Diamine Tetrahydrochloride
pdb|3JX6|B Chain B, Structure Of Neuronal Nitric Oxide Synthase D597nM336VY706
Heme Domain Complexed With N1-[(3' R,4'
R)-4'-((6"-Amino-4"
Methylpyridin-2"-Yl)methyl)pyrrolidin-3'-Yl]-N2-(3'-
Fluorop Ethane-1,2-Diamine Tetrahydrochloride
pdb|3NLJ|A Chain A, Structure Of Neuronal Nitric Oxide Synthase D597nM336VY706A
TRIPLE Mutant Heme Domain Complexed With
6-{{(3'r,4'r)-3'-[2"-(3'''- Fluorophenethylamino)ethoxy]
Pyrrolidin-4'-Yl}methyl}-4- Methylpyridin-2-Amine
pdb|3NLJ|B Chain B, Structure Of Neuronal Nitric Oxide Synthase D597nM336VY706A
TRIPLE Mutant Heme Domain Complexed With
6-{{(3'r,4'r)-3'-[2"-(3'''- Fluorophenethylamino)ethoxy]
Pyrrolidin-4'-Yl}methyl}-4- Methylpyridin-2-Amine
Length = 422
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 1047 KGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSL 1106
+G +A R FD+L + +DP+ +P L EV ++H F + F+DL L
Sbjct: 212 QGWKAPRGRFDVLPLLLQANGNDPELFQIPPELVLEVPIRHPKFDW--------FKDLGL 263
Query: 1107 R 1107
+
Sbjct: 264 K 264
>pdb|3DQR|A Chain A, Structure Of Neuronal Nos D597nM336V MUTANT HEME DOMAIN IN
Complex With A Inhibitor
(+-)-N1-{cis-4'-[(6"-Aminopyridin-
2"-Yl)methyl]pyrrolidin-3'-Yl}ethane-1,2-Diamine
pdb|3DQR|B Chain B, Structure Of Neuronal Nos D597nM336V MUTANT HEME DOMAIN IN
Complex With A Inhibitor
(+-)-N1-{cis-4'-[(6"-Aminopyridin-
2"-Yl)methyl]pyrrolidin-3'-Yl}ethane-1,2-Diamine
pdb|3JX2|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase D597nM336V
Heme Domain In Complex With
N1-{(3's,4's)-4'-[(6"-Amino-4"-
Methylpyridin-2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorop Ethane-1,2-Diamine
pdb|3JX2|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase D597nM336V
Heme Domain In Complex With
N1-{(3's,4's)-4'-[(6"-Amino-4"-
Methylpyridin-2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorop Ethane-1,2-Diamine
pdb|3JX3|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase D597nM336V
Heme Domain In Complex With
N1-{(3'r,4'r)-4'-[(6"-Amino-4"-
Methylpyridin-2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorop Ethane-1,2-Diamine
pdb|3JX3|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase D597nM336V
Heme Domain In Complex With
N1-{(3'r,4'r)-4'-[(6"-Amino-4"-
Methylpyridin-2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorop Ethane-1,2-Diamine
pdb|3JX4|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase D597nM336V
Heme Domain In Complex With
N1-{(3'r,4's)-4'-[(6"-Amino-4"-
Methylpyridin-2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorop Ethane-1,2-Diamine
pdb|3JX4|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase D597nM336V
Heme Domain In Complex With
N1-{(3'r,4's)-4'-[(6"-Amino-4"-
Methylpyridin-2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorop Ethane-1,2-Diamine
pdb|3JX5|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase D597nM336V
Heme Domain In Complex With
N1-{(3's,4'r)-4'-[(6"-Amino-4"-
Methylpyridin-2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorop Ethane-1,2-Diamine
pdb|3JX5|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase D597nM336V
Heme Domain In Complex With
N1-{(3's,4'r)-4'-[(6"-Amino-4"-
Methylpyridin-2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorop Ethane-1,2-Diamine
pdb|3NLP|A Chain A, Structure Of Neuronal Nitric Oxide Synthase D597nM336V
MUTANT HEME Domain In Complex With
6-{{(3's,4's)-3'-[2"-(3'''-
Fluorophenethylamino)ethoxy]pyrrolidin-4'-Yl}methyl}-4-
Methylpyridin- 2-Amine
pdb|3NLP|B Chain B, Structure Of Neuronal Nitric Oxide Synthase D597nM336V
MUTANT HEME Domain In Complex With
6-{{(3's,4's)-3'-[2"-(3'''-
Fluorophenethylamino)ethoxy]pyrrolidin-4'-Yl}methyl}-4-
Methylpyridin- 2-Amine
pdb|3NLQ|A Chain A, Structure Of Neuronal Nitric Oxide Synthase D597nM336V
MUTANT HEME Domain In Complex With
6-{{(3'r,4'r)-3'-[2"-(3'''-
Fluorophenethylamino)ethoxy]pyrrolidin-4'-Yl}methyl}-4-
Methylpyridin- 2-Amine
pdb|3NLQ|B Chain B, Structure Of Neuronal Nitric Oxide Synthase D597nM336V
MUTANT HEME Domain In Complex With
6-{{(3'r,4'r)-3'-[2"-(3'''-
Fluorophenethylamino)ethoxy]pyrrolidin-4'-Yl}methyl}-4-
Methylpyridin- 2-Amine
pdb|3NLR|A Chain A, Structure Of Neuronal Nitric Oxide Synthase D597nM336V
MUTANT HEME Domain In Complex With
6-{{(3'r,4's)-3'-[2"-(3'''-
Fluorophenethylamino)ethoxy]pyrrolidin-4'-Yl}methyl}-4-
Methylpyridin- 2-Amine
pdb|3NLR|B Chain B, Structure Of Neuronal Nitric Oxide Synthase D597nM336V
MUTANT HEME Domain In Complex With
6-{{(3'r,4's)-3'-[2"-(3'''-
Fluorophenethylamino)ethoxy]pyrrolidin-4'-Yl}methyl}-4-
Methylpyridin- 2-Amine
pdb|3N61|A Chain A, Structure Of Neuronal Nitric Oxide Synthase D597nM336V
MUTANT HEME Domain In Complex With
6,6'-(2,2'-(Pyridine-3,5-Diyl)bis(Ethane-2,1-
Diyl))bis(4-Methylpyridin-2-Amine)
pdb|3N61|B Chain B, Structure Of Neuronal Nitric Oxide Synthase D597nM336V
MUTANT HEME Domain In Complex With
6,6'-(2,2'-(Pyridine-3,5-Diyl)bis(Ethane-2,1-
Diyl))bis(4-Methylpyridin-2-Amine)
pdb|3N63|A Chain A, Structure Of Neuronal Nitric Oxide Synthase D597nM336V
MUTANT HEME Domain In Complex With
6,6'-(2,2'-(5-Amino-1,3-Phenylene)bis(Ethane-
2,1-Diyl))bis(4-Methylpyridin-2-Amine)
pdb|3N63|B Chain B, Structure Of Neuronal Nitric Oxide Synthase D597nM336V
MUTANT HEME Domain In Complex With
6,6'-(2,2'-(5-Amino-1,3-Phenylene)bis(Ethane-
2,1-Diyl))bis(4-Methylpyridin-2-Amine)
Length = 422
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 1047 KGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSL 1106
+G +A R FD+L + +DP+ +P L EV ++H F + F+DL L
Sbjct: 212 QGWKAPRGRFDVLPLLLQANGNDPELFQIPPELVLEVPIRHPKFDW--------FKDLGL 263
Query: 1107 R 1107
+
Sbjct: 264 K 264
>pdb|1QW6|A Chain A, Rat Neuronal Nitric Oxide Synthase Oxygenase Domain In
Complex With N- Omega-Propyl-L-Arg.
pdb|1QWC|A Chain A, Rat Neuronal Nitric Oxide Synthase Oxygenase Domain In
Complex With W1400 Inhibitor.
pdb|1VAG|A Chain A, Neuronal Nitric Oxide Synthase Oxygenase Domain Complexed
With The Inhibitor Ar-R17477
pdb|1ZVI|A Chain A, Rat Neuronal Nitric Oxide Synthase Oxygenase Domain
pdb|1ZVL|A Chain A, Rat Neuronal Nitric Oxide Synthase Oxygenase Domain
Complexed With Natural Substrate L-arg.
pdb|1ZVL|B Chain B, Rat Neuronal Nitric Oxide Synthase Oxygenase Domain
Complexed With Natural Substrate L-arg
Length = 420
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 1047 KGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSL 1106
+G +A R FD+L + +DP+ +P L EV ++H F + F+DL L
Sbjct: 212 QGWKAPRGRFDVLPLLLQANGNDPELFQIPPELVLEVPIRHPKFDW--------FKDLGL 263
Query: 1107 R 1107
+
Sbjct: 264 K 264
>pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I
Length = 696
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 1103 DLSLRARAGKTLALVGPSGCGKSSVIALV-----QRFYEPSSGRVMIDGKDIRKY 1152
+L+L A GK + P+GCGK+ V L+ ++F + G+V+ I Y
Sbjct: 20 ELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 74
>pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of Rig-I
Length = 695
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 1103 DLSLRARAGKTLALVGPSGCGKSSVIALV-----QRFYEPSSGRVMIDGKDIRKY 1152
+L+L A GK + P+GCGK+ V L+ ++F + G+V+ I Y
Sbjct: 19 ELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 73
>pdb|3JWS|A Chain A, Structure Of Neuronal Nitric Oxide Synthase R349a Mutant Hem
Complexed With N1-[(3'
S,4's)-4'-((6"-Amino-4"-Methylpyridi
Methyl)pyrrolidin-3'-Yl]-N2-(3'-Fluorophenethyl)ethane-1,
2- Tetrahydrochloride
pdb|3JWS|B Chain B, Structure Of Neuronal Nitric Oxide Synthase R349a Mutant Hem
Complexed With N1-[(3'
S,4's)-4'-((6"-Amino-4"-Methylpyridi
Methyl)pyrrolidin-3'-Yl]-N2-(3'-Fluorophenethyl)ethane-1,
2- Tetrahydrochloride
pdb|3JWT|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase R349a Mutant
Heme Domain In Complex With
N1-{(3'r,4'r)-4'-[(6"-Amino-4"-Methylpyridin-
2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorophenethyl)ethane-1,2- Diamine
pdb|3JWT|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase R349a Mutant
Heme Domain In Complex With
N1-{(3'r,4'r)-4'-[(6"-Amino-4"-Methylpyridin-
2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorophenethyl)ethane-1,2- Diamine
pdb|3JWU|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase R349a Mutant
Domain In Complex With
N1-{(3'r,4's)-4'-[(6"-Amino-4"-Methy
2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorophenethyl)ethan Diamine Tetrahydrochloride
pdb|3JWU|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase R349a Mutant
Domain In Complex With
N1-{(3'r,4's)-4'-[(6"-Amino-4"-Methy
2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorophenethyl)ethan Diamine Tetrahydrochloride
pdb|3JWV|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase R349a Mutant
Domain In Complex With
N1-{(3's,4'r)-4'-[(6"-Amino-4"-Methy
2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorophenethyl)ethan Diamine
pdb|3JWV|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase R349a Mutant
Domain In Complex With
N1-{(3's,4'r)-4'-[(6"-Amino-4"-Methy
2"-Yl)methyl]pyrrolidin-3'-Yl}-N2-(3'-
Fluorophenethyl)ethan Diamine
pdb|3NLK|A Chain A, Structure Of Neuronal Nitric Oxide Synthase R349a Mutant
Heme Domain In Complex With
6-{{(3's,4's)-3'-[2"-(3'''-Fluorophenethylamino)
Ethoxy]pyrrolidin-4'-Yl}methyl}-4-Methylpyridin-2-Amine
pdb|3NLK|B Chain B, Structure Of Neuronal Nitric Oxide Synthase R349a Mutant
Heme Domain In Complex With
6-{{(3's,4's)-3'-[2"-(3'''-Fluorophenethylamino)
Ethoxy]pyrrolidin-4'-Yl}methyl}-4-Methylpyridin-2-Amine
pdb|3NLN|A Chain A, Structure Of Neuronal Nitric Oxide Synthase R349a Mutant
Heme Domain In Complex With
6-{{(3'r,4's)-3'-[2"-(3'''-Fluorophenethylamino)
Ethoxy]pyrrolidin-4'-Yl}methyl}-4-Methylpyridin-2-Amine
pdb|3NLN|B Chain B, Structure Of Neuronal Nitric Oxide Synthase R349a Mutant
Heme Domain In Complex With
6-{{(3'r,4's)-3'-[2"-(3'''-Fluorophenethylamino)
Ethoxy]pyrrolidin-4'-Yl}methyl}-4-Methylpyridin-2-Amine
pdb|3NLO|A Chain A, Structure Of Neuronal Nitric Oxide Synthase R349a Mutant
Heme Domain In Complex With
6-{{(3's,4'r)-3'-[2"-(3'''-Fluorophenethylamino)
Ethoxy]pyrrolidin-4'-Yl}methyl}-4-Methylpyridin-2-Amine
pdb|3NLO|B Chain B, Structure Of Neuronal Nitric Oxide Synthase R349a Mutant
Heme Domain In Complex With
6-{{(3's,4'r)-3'-[2"-(3'''-Fluorophenethylamino)
Ethoxy]pyrrolidin-4'-Yl}methyl}-4-Methylpyridin-2-Amine
Length = 422
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 1047 KGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSL 1106
+G +A R FD+L + +DP+ +P L EV ++H F + F+DL L
Sbjct: 212 QGWKAPRGRFDVLPLLLQANGNDPELFQIPPELVLEVPIRHPKFDW--------FKDLGL 263
Query: 1107 R 1107
+
Sbjct: 264 K 264
>pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I
Length = 687
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 1103 DLSLRARAGKTLALVGPSGCGKSSVIALV-----QRFYEPSSGRVMIDGKDIRKY 1152
+L+L A GK + P+GCGK+ V L+ ++F + G+V+ I Y
Sbjct: 11 ELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 65
>pdb|1LZX|A Chain A, Rat Neuronal Nos Heme Domain With Ng-Hydroxy-L-Arginine
Bound
pdb|1LZX|B Chain B, Rat Neuronal Nos Heme Domain With Ng-Hydroxy-L-Arginine
Bound
pdb|1LZZ|A Chain A, Rat Neuronal Nos Heme Domain With
N-Isopropyl-N'-Hydroxyguanidine Bound
pdb|1LZZ|B Chain B, Rat Neuronal Nos Heme Domain With
N-Isopropyl-N'-Hydroxyguanidine Bound
pdb|1M00|A Chain A, Rat Neuronal Nos Heme Domain With
N-Butyl-N'-Hydroxyguanidine Bound
pdb|1M00|B Chain B, Rat Neuronal Nos Heme Domain With
N-Butyl-N'-Hydroxyguanidine Bound
pdb|1K2R|A Chain A, Structure Of Rat Brain Nnos Heme Domain Complexed With Ng-
Nitro-L-Arginine
pdb|1K2R|B Chain B, Structure Of Rat Brain Nnos Heme Domain Complexed With Ng-
Nitro-L-Arginine
pdb|1K2S|A Chain A, Structure Of Rat Brain Nnos Heme Domain Complexed With Ng-
Allyl-L-Arginine
pdb|1K2S|B Chain B, Structure Of Rat Brain Nnos Heme Domain Complexed With Ng-
Allyl-L-Arginine
pdb|1K2T|A Chain A, Structure Of Rat Brain Nnos Heme Domain Complexed With S-
Ethyl-N-Phenyl-Isothiourea
pdb|1K2T|B Chain B, Structure Of Rat Brain Nnos Heme Domain Complexed With S-
Ethyl-N-Phenyl-Isothiourea
pdb|1K2U|A Chain A, Structure Of Rat Brain Nnos Heme Domain Complexed With S-
Ethyl-N-[4-(Trifluoromethyl)phenyl] Isothiourea
pdb|1K2U|B Chain B, Structure Of Rat Brain Nnos Heme Domain Complexed With S-
Ethyl-N-[4-(Trifluoromethyl)phenyl] Isothiourea
pdb|1MMV|A Chain A, Rat Neuronal Nos Heme Domain With Ng-Propyl-L-Arginine Bound
pdb|1MMV|B Chain B, Rat Neuronal Nos Heme Domain With Ng-Propyl-L-Arginine Bound
pdb|1MMW|A Chain A, Rat Neuronal Nos Heme Domain With Vinyl-L-Nio Bound
pdb|1MMW|B Chain B, Rat Neuronal Nos Heme Domain With Vinyl-L-Nio Bound
Length = 419
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 1047 KGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSL 1106
+G +A R FD+L + +DP+ +P L EV ++H F + F+DL L
Sbjct: 210 QGWKAPRGRFDVLPLLLQANGNDPELFQIPPELVLEVPIRHPKFDW--------FKDLGL 261
Query: 1107 R 1107
+
Sbjct: 262 K 262
>pdb|3N65|A Chain A, Structure Of Neuronal Nitric Oxide Synthase S602h Mutant
Heme Domain In Complex With
6,6'-(2,2'-(Pyridine-3,5-Diyl)bis(Ethane-2,1-Diyl))
Bis(4-Methylpyridin-2-Amine)
pdb|3N65|B Chain B, Structure Of Neuronal Nitric Oxide Synthase S602h Mutant
Heme Domain In Complex With
6,6'-(2,2'-(Pyridine-3,5-Diyl)bis(Ethane-2,1-Diyl))
Bis(4-Methylpyridin-2-Amine)
pdb|3N66|A Chain A, Structure Of Neuronal Nitric Oxide Synthase S602h Mutant
Heme Domain In Complex With
6,6'-(2,2'-(5-Amino-1,3-Phenylene)bis(Ethane-2,1-
Diyl))bis(4-Methylpyridin-2-Amine)
pdb|3N66|B Chain B, Structure Of Neuronal Nitric Oxide Synthase S602h Mutant
Heme Domain In Complex With
6,6'-(2,2'-(5-Amino-1,3-Phenylene)bis(Ethane-2,1-
Diyl))bis(4-Methylpyridin-2-Amine)
Length = 422
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 1047 KGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSL 1106
+G +A R FD+L + +DP+ +P L EV ++H F + F+DL L
Sbjct: 212 QGWKAPRGRFDVLPLLLQANGNDPELFQIPPELVLEVPIRHPKFDW--------FKDLGL 263
Query: 1107 R 1107
+
Sbjct: 264 K 264
>pdb|2G6H|A Chain A, Structure Of Rat Nnos Heme Domain (Bh4 Bound) In The Reduced
Form
pdb|2G6H|B Chain B, Structure Of Rat Nnos Heme Domain (Bh4 Bound) In The Reduced
Form
pdb|2G6I|A Chain A, Structure Of Rat Nnos Heme Domain (Bh2-Bound) In The Reduced
Form
pdb|2G6I|B Chain B, Structure Of Rat Nnos Heme Domain (Bh2-Bound) In The Reduced
Form
pdb|2G6K|A Chain A, Structure Of Rat Nnos Heme Domain (Bh4 Bound) Complexed With
No
pdb|2G6K|B Chain B, Structure Of Rat Nnos Heme Domain (Bh4 Bound) Complexed With
No
pdb|2G6L|A Chain A, Structure Of Rat Nnos Heme Domain (Bh2 Bound) Complexed With
No
pdb|2G6L|B Chain B, Structure Of Rat Nnos Heme Domain (Bh2 Bound) Complexed With
No
pdb|2G6M|A Chain A, Structure Of Rat Nnos Heme Domain (Bh4 Bound) Complexed With
Co
pdb|2G6M|B Chain B, Structure Of Rat Nnos Heme Domain (Bh4 Bound) Complexed With
Co
pdb|2G6N|A Chain A, Strcture Of Rat Nnos Heme Domain (Bh2 Bound) Complexed With
Co
pdb|2G6N|B Chain B, Strcture Of Rat Nnos Heme Domain (Bh2 Bound) Complexed With
Co
Length = 420
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 1047 KGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSL 1106
+G +A R FD+L + +DP+ +P L EV ++H F + F+DL L
Sbjct: 210 QGWKAPRGRFDVLPLLLQANGNDPELFQIPPELVLEVPIRHPKFDW--------FKDLGL 261
Query: 1107 R 1107
+
Sbjct: 262 K 262
>pdb|1OM4|A Chain A, Structure Of Rat Neuronal Nos Heme Domain With L-arginine
Bound
pdb|1OM4|B Chain B, Structure Of Rat Neuronal Nos Heme Domain With L-arginine
Bound
pdb|2HX3|A Chain A, Rat Nnos Heme Domain Complexed With
(4s)-N-{4-Amino-5-[(2-Aminoethyl)-
Hydroxyamino]-Pentyl}-N'-Nitroguanidine
pdb|2HX3|B Chain B, Rat Nnos Heme Domain Complexed With
(4s)-N-{4-Amino-5-[(2-Aminoethyl)-
Hydroxyamino]-Pentyl}-N'-Nitroguanidine
pdb|2HX4|A Chain A, Rat Nnos Heme Domain Complexed With
4-N-(Nw-Nitro-L-Argininyl)-Trans-
4-Hydroxyamino-L-Proline Amide
pdb|2HX4|B Chain B, Rat Nnos Heme Domain Complexed With
4-N-(Nw-Nitro-L-Argininyl)-Trans-
4-Hydroxyamino-L-Proline Amide
pdb|3B3M|A Chain A, Structure Of Neuronal Nos Heme Domain In Complex With A
Inhibitor (+-)-3-{cis-4'-[(6"-Aminopyridin-2"-Yl)
Methyl]pyrrolidin-3'-Ylamino}propan-1-Ol
pdb|3B3M|B Chain B, Structure Of Neuronal Nos Heme Domain In Complex With A
Inhibitor (+-)-3-{cis-4'-[(6"-Aminopyridin-2"-Yl)
Methyl]pyrrolidin-3'-Ylamino}propan-1-Ol
pdb|3B3N|A Chain A, Structure Of Neuronal Nos Heme Domain In Complex With A
Inhibitor (+-)-N1-{cis-4'-[(6"-Aminopyridin-2"-Yl)
Methyl]pyrrolidin-3'-Yl}ethane-1,2-Diamine
pdb|3B3N|B Chain B, Structure Of Neuronal Nos Heme Domain In Complex With A
Inhibitor (+-)-N1-{cis-4'-[(6"-Aminopyridin-2"-Yl)
Methyl]pyrrolidin-3'-Yl}ethane-1,2-Diamine
pdb|3B3O|A Chain A, Structure Of Neuronal Nos Heme Domain In Complex With A
Inhibitor (+-)-N1-{cis-4'-[(6"-Amino-4"-Methylpyridin-2"-
Yl)methyl]pyrrolidin-3'-Yl}-N2-(4'-Chlorobenzyl)ethane-1,
2- Diamine
pdb|3B3O|B Chain B, Structure Of Neuronal Nos Heme Domain In Complex With A
Inhibitor (+-)-N1-{cis-4'-[(6"-Amino-4"-Methylpyridin-2"-
Yl)methyl]pyrrolidin-3'-Yl}-N2-(4'-Chlorobenzyl)ethane-1,
2- Diamine
pdb|3B3P|A Chain A, Structure Of Neuronal Nos Heme Domain In Complex With A
Inhibitor (+-)-N1-{cis-4'-[(6"-Amino-4"-Methylpyridin-2"-
Yl)methyl]pyrrolidin-3'-Yl}-N2-(4'-Chlorobenzyl)ethane-1,
2- Diamine
pdb|3B3P|B Chain B, Structure Of Neuronal Nos Heme Domain In Complex With A
Inhibitor (+-)-N1-{cis-4'-[(6"-Amino-4"-Methylpyridin-2"-
Yl)methyl]pyrrolidin-3'-Yl}-N2-(4'-Chlorobenzyl)ethane-1,
2- Diamine
pdb|3HSN|A Chain A, Ternary Structure Of Neuronal Nitric Oxide Synthase With Nha
And Co Bound
pdb|3HSN|B Chain B, Ternary Structure Of Neuronal Nitric Oxide Synthase With Nha
And Co Bound
pdb|3HSO|A Chain A, Ternary Structure Of Neuronal Nitric Oxide Synthase With Nha
And No Bound(1)
pdb|3HSO|B Chain B, Ternary Structure Of Neuronal Nitric Oxide Synthase With Nha
And No Bound(1)
pdb|3HSP|A Chain A, Ternary Structure Of Neuronal Nitric Oxide Synthase With Nha
And No Bound(2)
pdb|3HSP|B Chain B, Ternary Structure Of Neuronal Nitric Oxide Synthase With Nha
And No Bound(2)
pdb|3JT3|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain
Complexed With N~5~-[2-(Methylsulfanyl)ethanimidoyl]-L-
Ornithine
pdb|3JT3|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain
Complexed With N~5~-[2-(Methylsulfanyl)ethanimidoyl]-L-
Ornithine
pdb|3JT4|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain
Complexed With N~5~-[(3-(Ethylsulfanyl)propanimidoyl]-L-
Ornithine
pdb|3JT4|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain
Complexed With N~5~-[(3-(Ethylsulfanyl)propanimidoyl]-L-
Ornithine
pdb|3JT5|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain
Complexed With N~5~-[2-(Ethylsulfanyl)ethanimidoyl]-L-
Ornithine
pdb|3JT5|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain
Complexed With N~5~-[2-(Ethylsulfanyl)ethanimidoyl]-L-
Ornithine
pdb|3JT6|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain
Complexed With N~5~-[4-(Methylsulfanyl)butanimidoyl]-L-
Ornithine
pdb|3JT6|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain
Complexed With N~5~-[4-(Methylsulfanyl)butanimidoyl]-L-
Ornithine
pdb|3JT7|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain
Complexed With N~5~-[2-(Propylsulfanyl)ethanimidoyl]-L-
Ornithine
pdb|3JT7|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain
Complexed With N~5~-[2-(Propylsulfanyl)ethanimidoyl]-L-
Ornithine
pdb|3JT8|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain
Complexed With N~5~-{3-[(1-Methylethyl)
Sulfanyl]propanimidoyl}-L-Ornithine
pdb|3JT8|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain
Complexed With N~5~-{3-[(1-Methylethyl)
Sulfanyl]propanimidoyl}-L-Ornithine
pdb|3JT9|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
The Ferrous State Complexed With N~5~-[2-(Ethylsulfanyl)
Ethanimidoyl]-L-Ornithine
pdb|3JT9|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
The Ferrous State Complexed With N~5~-[2-(Ethylsulfanyl)
Ethanimidoyl]-L-Ornithine
pdb|3JTA|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
The Ferrous State Complexed With N~5~-[4-(Methylsulfanyl)
Butanimidoyl]-L-Ornithine
pdb|3JTA|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
The Ferrous State Complexed With N~5~-[4-(Methylsulfanyl)
Butanimidoyl]-L-Ornithine
pdb|3N2R|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
6-(((3r,4r3S,
4S)-4-(3-Phenoxyphenoxy)pyrrolidin-3-Yl)methyl)
Pyridin-2-Amine
pdb|3N2R|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
6-(((3r,4r3S,
4S)-4-(3-Phenoxyphenoxy)pyrrolidin-3-Yl)methyl)
Pyridin-2-Amine
pdb|3NNY|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase Heme Domain
Complexed With
6-(((3r,
4r)-4-(2-(3-Fluorophenethylamino)ethoxy)pyrrolidin-3-
Yl)methyl)pyridin-2-Amine
pdb|3NNY|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase Heme Domain
Complexed With
6-(((3r,
4r)-4-(2-(3-Fluorophenethylamino)ethoxy)pyrrolidin-3-
Yl)methyl)pyridin-2-Amine
pdb|3NNZ|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase Heme Domain
Complexed With
6-(((3s,
4s)-4-(2-(3-Fluorophenethylamino)ethoxy)pyrrolidin-3-
Yl)methyl)pyridin-2-Amine
pdb|3NNZ|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase Heme Domain
Complexed With
6-(((3s,
4s)-4-(2-(3-Fluorophenethylamino)ethoxy)pyrrolidin-3-
Yl)methyl)pyridin-2-Amine
pdb|3NLM|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
6-{{(3'r,4'r)-3'-[2"-(3'''-Fluorophenethylamino)
Ethoxy]pyrrolidin-4'-Yl}methyl}-4-Methylpyridin-2-Amine
pdb|3NLM|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
6-{{(3'r,4'r)-3'-[2"-(3'''-Fluorophenethylamino)
Ethoxy]pyrrolidin-4'-Yl}methyl}-4-Methylpyridin-2-Amine
pdb|3NLV|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase Heme Domain
In Complex With
6-(((3s,4s)-4-(2-(2,
2-Difluoro-2-(3-Fluorophenyl)ethylamino)
Ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3NLV|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase Heme Domain
In Complex With
6-(((3s,4s)-4-(2-(2,
2-Difluoro-2-(3-Fluorophenyl)ethylamino)
Ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3NLW|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase Heme Domain
In Complex With
6-(((3s,4s)-4-(2-(2,
2-Difluoro-2-(Piperidin-2-Yl)ethylamino)
Ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3NLW|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase Heme Domain
In Complex With
6-(((3s,4s)-4-(2-(2,
2-Difluoro-2-(Piperidin-2-Yl)ethylamino)
Ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3NLX|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase Heme Domain
In Complex With 6-(((3r,4r)-4-(2-
(2,2-Difluoro-2-(3-Fluorophenyl)ethylamino)
Ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3NLX|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase Heme Domain
In Complex With 6-(((3r,4r)-4-(2-
(2,2-Difluoro-2-(3-Fluorophenyl)ethylamino)
Ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3NLY|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase Heme Domain
In Complex With 6-(((3r,4r)-4-(2-
(2,2-Difluoro-2-(4-Fluorophenyl)ethylamino)
Ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3NLY|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase Heme Domain
In Complex With 6-(((3r,4r)-4-(2-
(2,2-Difluoro-2-(4-Fluorophenyl)ethylamino)
Ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3NLZ|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase Heme Domain
In Complex With
6-(((3r,4r)-4-(2-(2,2-Difluoro-2-Phenylethylamino)ethoxy)
Pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3NLZ|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase Heme Domain
In Complex With
6-(((3r,4r)-4-(2-(2,2-Difluoro-2-Phenylethylamino)ethoxy)
Pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3NM0|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase Heme Domain
In Complex With
6-(((3r,4r)-4-(2-(2,2-Difluoro-2-Phenylethylamino)ethoxy)
Pyrrolidin-3-Yl)methyl)-4-Methyl-3,4,5,
6-Tetrahydropyridin-2-Amine
pdb|3NM0|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase Heme Domain
In Complex With
6-(((3r,4r)-4-(2-(2,2-Difluoro-2-Phenylethylamino)ethoxy)
Pyrrolidin-3-Yl)methyl)-4-Methyl-3,4,5,
6-Tetrahydropyridin-2-Amine
pdb|3N5V|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
4-(3-(2-(6-Amino-4-Methylpyridin-2-Yl)ethyl)phenethyl)-6-
Methylpyridin-2-Amine
pdb|3N5V|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
4-(3-(2-(6-Amino-4-Methylpyridin-2-Yl)ethyl)phenethyl)-6-
Methylpyridin-2-Amine
pdb|3N5W|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
6,6'-(2,2'-(Pyridine-3,5-Diyl)bis(Ethane-2,1-Diyl))bis(4-
Methylpyridin-2-Amine)
pdb|3N5W|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
6,6'-(2,2'-(Pyridine-3,5-Diyl)bis(Ethane-2,1-Diyl))bis(4-
Methylpyridin-2-Amine)
pdb|3N5X|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
4-(2-(5-(2-(6-Amino-4-Methylpyridin-2-Yl)ethyl)pyridin-3-
Yl) Ethyl)-6-Methylpyridin-2-Amine
pdb|3N5X|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
4-(2-(5-(2-(6-Amino-4-Methylpyridin-2-Yl)ethyl)pyridin-3-
Yl) Ethyl)-6-Methylpyridin-2-Amine
pdb|3N5Y|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
6,6'-(2,2'-(Pyridine-2,6-Diyl)bis(Ethane-2,1-Diyl))bis(4-
Methylpyridin-2-Amine)
pdb|3N5Y|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
6,6'-(2,2'-(Pyridine-2,6-Diyl)bis(Ethane-2,1-Diyl))bis(4-
Methylpyridin-2-Amine)
pdb|3N5Z|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
4-(2-(6-(2-(6-Amino-4-Methylpyridin-2-Yl)ethyl)pyridin-2-
Yl) Ethyl)-6-Methylpyridin-2-Amine
pdb|3N5Z|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
4-(2-(6-(2-(6-Amino-4-Methylpyridin-2-Yl)ethyl)pyridin-2-
Yl) Ethyl)-6-Methylpyridin-2-Amine
pdb|3N60|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
6,6'-(2,2'-(5-Amino-1,3-Phenylene)bis(Ethane-2,
1-Diyl))bis(4- Methylpyridin-2-Amine)
pdb|3N60|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
6,6'-(2,2'-(5-Amino-1,3-Phenylene)bis(Ethane-2,
1-Diyl))bis(4- Methylpyridin-2-Amine)
pdb|3Q99|A Chain A, Structure Of Neuronal Nitric Oxide Synthase In The Ferric
State In Complex With
N~5~-[(3-(Ethylsulfanyl)propanimidoyl]-L-Ornithine
pdb|3Q99|B Chain B, Structure Of Neuronal Nitric Oxide Synthase In The Ferric
State In Complex With
N~5~-[(3-(Ethylsulfanyl)propanimidoyl]-L-Ornithine
pdb|3Q9A|A Chain A, Structure Of Neuronal Nitric Oxide Synthase In The Ferric
State In Complex With
N-5-[2-(Ethylsulfanyl)ethanimidoyl]-L-Ornithine
pdb|3Q9A|B Chain B, Structure Of Neuronal Nitric Oxide Synthase In The Ferric
State In Complex With
N-5-[2-(Ethylsulfanyl)ethanimidoyl]-L-Ornithine
pdb|3SVP|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase Heme Domain
In Complex With
6-(((3r,4r)-4-(2-((2,
2-Difluoro-2-(3-Chloro-5-Fluorophenyl)
Ethyl)amino)ethoxy)pyrrolidin-3-Yl)methyl)-4-
Methylpyridin-2-Amine
pdb|3SVP|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase Heme Domain
In Complex With
6-(((3r,4r)-4-(2-((2,
2-Difluoro-2-(3-Chloro-5-Fluorophenyl)
Ethyl)amino)ethoxy)pyrrolidin-3-Yl)methyl)-4-
Methylpyridin-2-Amine
pdb|3SVQ|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase Heme Domain
In Complex With
6-(((3r,4r)-4-(2-((2,2-Difluoro-2-(2,
3-Difluorophenyl)ethyl)
Amino)ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-
Amine
pdb|3SVQ|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase Heme Domain
In Complex With
6-(((3r,4r)-4-(2-((2,2-Difluoro-2-(2,
3-Difluorophenyl)ethyl)
Amino)ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-
Amine
pdb|3PNG|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase Heme Domain
In Complex With
6-(((3r,
4r)-4-(2-((2-Fluoro-2-(3-Fluorophenyl)ethyl)amino)
Ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3PNG|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase Heme Domain
In Complex With
6-(((3r,
4r)-4-(2-((2-Fluoro-2-(3-Fluorophenyl)ethyl)amino)
Ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3PNE|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase Heme Domain
In Complex With
6-(((3r,4r)-4-(2-((2,
2-Difluoro-2-(3-Chlorophenyl)ethyl)amino)
Ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3PNE|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase Heme Domain
In Complex With
6-(((3r,4r)-4-(2-((2,
2-Difluoro-2-(3-Chlorophenyl)ethyl)amino)
Ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3PNF|A Chain A, Structure Of Rat Neuronal Nitric Oxide Synthase Heme Domain
In Complex With
6-(((3r,4r)-4-(2-((2,
2-Difluoro-2-(2-Chlorophenyl)ethyl)amino)
Ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3PNF|B Chain B, Structure Of Rat Neuronal Nitric Oxide Synthase Heme Domain
In Complex With
6-(((3r,4r)-4-(2-((2,
2-Difluoro-2-(2-Chlorophenyl)ethyl)amino)
Ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3TYL|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
6-(((3s,
4s)-4-(2-((2-Fluorobenzyl)amino)ethoxy)pyrrolidin-3-Yl)
Methyl)-4-Methylpyridin-2-Amine
pdb|3TYL|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
6-(((3s,
4s)-4-(2-((2-Fluorobenzyl)amino)ethoxy)pyrrolidin-3-Yl)
Methyl)-4-Methylpyridin-2-Amine
pdb|3TYM|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
6-(((3s,
4s)-4-(2-((2-Methoxybenzyl)amino)ethoxy)pyrrolidin-3-
Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3TYM|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
6-(((3s,
4s)-4-(2-((2-Methoxybenzyl)amino)ethoxy)pyrrolidin-3-
Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3TYN|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
2-(((2-(((3s,4s)-4-((6-Amino-4-Methylpyridin-2-Yl)methyl)
Pyrrolidin-3-Yl)oxy)ethyl)amino)methyl)phenol
pdb|3TYN|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
2-(((2-(((3s,4s)-4-((6-Amino-4-Methylpyridin-2-Yl)methyl)
Pyrrolidin-3-Yl)oxy)ethyl)amino)methyl)phenol
pdb|3TYO|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
6-(((3s,
4s)-4-(2-((Furan-2-Ylmethyl)amino)ethoxy)pyrrolidin-3-
Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3TYO|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
6-(((3s,
4s)-4-(2-((Furan-2-Ylmethyl)amino)ethoxy)pyrrolidin-3-
Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3RQJ|A Chain A, Structure Of The Neuronal Nitric Oxide Synthase Heme Domain
In Complex With
6-(((3r,4r)-4-(2-((1s,
2r)-2-(3-Fluorophenyl)cyclopropylamino)
Ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3RQJ|B Chain B, Structure Of The Neuronal Nitric Oxide Synthase Heme Domain
In Complex With
6-(((3r,4r)-4-(2-((1s,
2r)-2-(3-Fluorophenyl)cyclopropylamino)
Ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3RQK|A Chain A, Structure Of The Neuronal Nitric Oxide Synthase Heme Domain
In Complex With
4-Methyl-6-{[(3r,4r)-4-(2-{[(1r,2s)-2-(3-Methylphenyl)
Cyclopropyl]amino}ethoxy)pyrrolidin-3-Yl]methyl}pyridin-
2-Amine And Its Isomer
pdb|3RQK|B Chain B, Structure Of The Neuronal Nitric Oxide Synthase Heme Domain
In Complex With
4-Methyl-6-{[(3r,4r)-4-(2-{[(1r,2s)-2-(3-Methylphenyl)
Cyclopropyl]amino}ethoxy)pyrrolidin-3-Yl]methyl}pyridin-
2-Amine And Its Isomer
pdb|3RQL|A Chain A, Structure Of The Neuronal Nitric Oxide Synthase Heme Domain
In Complex With
6-(((3r,4r)-4-(2-((1s,2r1R,2S)-2-(3-Clorophenyl)
Cyclopropylamino)ethoxy)pyrrolidin-3-Yl)methyl)-4-
Methylpyridin-2- Amine
pdb|3RQL|B Chain B, Structure Of The Neuronal Nitric Oxide Synthase Heme Domain
In Complex With
6-(((3r,4r)-4-(2-((1s,2r1R,2S)-2-(3-Clorophenyl)
Cyclopropylamino)ethoxy)pyrrolidin-3-Yl)methyl)-4-
Methylpyridin-2- Amine
pdb|3RQM|A Chain A, Structure Of The Neuronal Nitric Oxide Synthase Heme Domain
In Complex With
6-{[(3r,4r)-4-(2-{[(2r2S)-1-(3-Fluorophenyl)propan-2-
Yl]amino}ethoxy)pyrrolidin-3-Yl]methyl}-4-Methylpyridin-
2-Amine
pdb|3RQM|B Chain B, Structure Of The Neuronal Nitric Oxide Synthase Heme Domain
In Complex With
6-{[(3r,4r)-4-(2-{[(2r2S)-1-(3-Fluorophenyl)propan-2-
Yl]amino}ethoxy)pyrrolidin-3-Yl]methyl}-4-Methylpyridin-
2-Amine
pdb|3RQN|A Chain A, Structure Of The Neuronal Nitric Oxide Synthase Heme Domain
In Complex With 6-(((3R,4R)-4-(2-(((S
)-1-(3-Fluorophenyl)propan-2-Yl)
Amino)ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-
Amine
pdb|3RQN|B Chain B, Structure Of The Neuronal Nitric Oxide Synthase Heme Domain
In Complex With 6-(((3R,4R)-4-(2-(((S
)-1-(3-Fluorophenyl)propan-2-Yl)
Amino)ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-
Amine
pdb|3UFO|A Chain A, Structure Of Rat Nitric Oxide Synthase Heme Domain In
Complex With 6-
(((3s,
4s)-4-((5-(3-Fluorophenyl)pentyl)oxy)pyrrolidin-3-
Yl)methyl)-4- Methylpyridin-2-Amine
pdb|3UFO|B Chain B, Structure Of Rat Nitric Oxide Synthase Heme Domain In
Complex With 6-
(((3s,
4s)-4-((5-(3-Fluorophenyl)pentyl)oxy)pyrrolidin-3-
Yl)methyl)-4- Methylpyridin-2-Amine
pdb|3UFP|A Chain A, Structure Of Rat Nitric Oxide Synthase Heme Domain In
Complex With 6-
(((3r,
4r)-4-((5-(3-Fluorophenyl)pentyl)oxy)pyrrolidin-3-
Yl)methyl)-4- Methylpyridin-2-Amine
pdb|3UFP|B Chain B, Structure Of Rat Nitric Oxide Synthase Heme Domain In
Complex With 6-
(((3r,
4r)-4-((5-(3-Fluorophenyl)pentyl)oxy)pyrrolidin-3-
Yl)methyl)-4- Methylpyridin-2-Amine
pdb|3UFQ|A Chain A, Structure Of Rat Nitric Oxide Synthase Heme Domain In
Complex With 6-
(((3s,
4s)-4-(((E)-5-(3-Fluorophenyl)pent-4-En-1-
Yl)oxy)pyrrolidin-3- Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3UFQ|B Chain B, Structure Of Rat Nitric Oxide Synthase Heme Domain In
Complex With 6-
(((3s,
4s)-4-(((E)-5-(3-Fluorophenyl)pent-4-En-1-
Yl)oxy)pyrrolidin-3- Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3UFR|A Chain A, Structure Of Rat Nitric Oxide Synthase Heme Domain In
Complex With 6-
(((3r,
4r)-4-(((E)-5-(3-Fluorophenyl)pent-4-En-1-
Yl)oxy)pyrrolidin-3- Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3UFR|B Chain B, Structure Of Rat Nitric Oxide Synthase Heme Domain In
Complex With 6-
(((3r,
4r)-4-(((E)-5-(3-Fluorophenyl)pent-4-En-1-
Yl)oxy)pyrrolidin-3- Yl)methyl)-4-Methylpyridin-2-Amine
pdb|3UFS|A Chain A, Structure Of Rat Nitric Oxide Synthase Heme Domain In
Complex With 6-
(((3r,
4r)-4-((5-(3-Chloro-5-Fluorophenyl)pentyl)oxy)pyrrolidin-
3-Yl) Methyl)-4-Methylpyridin-2-Amine
pdb|3UFS|B Chain B, Structure Of Rat Nitric Oxide Synthase Heme Domain In
Complex With 6-
(((3r,
4r)-4-((5-(3-Chloro-5-Fluorophenyl)pentyl)oxy)pyrrolidin-
3-Yl) Methyl)-4-Methylpyridin-2-Amine
pdb|3UFT|A Chain A, Structure Of Rat Nitric Oxide Synthase Heme Domain In
Complex With 6-
(((3r,
4r)-4-(4-(3-Chloro-5-Fluorophenoxy)butoxy)pyrrolidin-3-
Yl) Methyl)-4-Methylpyridin-2-Amine
pdb|3UFT|B Chain B, Structure Of Rat Nitric Oxide Synthase Heme Domain In
Complex With 6-
(((3r,
4r)-4-(4-(3-Chloro-5-Fluorophenoxy)butoxy)pyrrolidin-3-
Yl) Methyl)-4-Methylpyridin-2-Amine
pdb|3UFU|A Chain A, Structure Of Rat Nitric Oxide Synthase Heme Domain In
Complex With 4-
Methyl-6-(((3r,
4r)-4-((5-(Pyridin-2-Yl)pentyl)oxy)pyrrolidin-3-Yl)
Methyl)pyridin-2-Amine
pdb|3UFU|B Chain B, Structure Of Rat Nitric Oxide Synthase Heme Domain In
Complex With 4-
Methyl-6-(((3r,
4r)-4-((5-(Pyridin-2-Yl)pentyl)oxy)pyrrolidin-3-Yl)
Methyl)pyridin-2-Amine
pdb|3UFV|A Chain A, Structure Of Rat Nitric Oxide Synthase Heme Domain In
Complex With 4-
Methyl-6-(((3r,
4r)-4-((5-(4-Methylpyridin-2-Yl)pentyl)oxy)pyrrolidin-
3-Yl)methyl)pyridin-2-Amine
pdb|3UFV|B Chain B, Structure Of Rat Nitric Oxide Synthase Heme Domain In
Complex With 4-
Methyl-6-(((3r,
4r)-4-((5-(4-Methylpyridin-2-Yl)pentyl)oxy)pyrrolidin-
3-Yl)methyl)pyridin-2-Amine
pdb|3UFW|A Chain A, Structure Of Rat Nitric Oxide Synthase Heme Domain In
Complex With 6-
(((3r,
4r)-4-((5-(6-Aminopyridin-2-Yl)pentyl)oxy)pyrrolidin-3-
Yl) Methyl)-4-Methylpyridin-2-Amine
pdb|3UFW|B Chain B, Structure Of Rat Nitric Oxide Synthase Heme Domain In
Complex With 6-
(((3r,
4r)-4-((5-(6-Aminopyridin-2-Yl)pentyl)oxy)pyrrolidin-3-
Yl) Methyl)-4-Methylpyridin-2-Amine
pdb|4EUX|A Chain A, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
6-(5-(((3r,4r)-4-((6-Amino-4-Methylpyridin-2-Yl)methyl)
Pyrrolidin-3-Yl)oxy)pentyl)-4-Methylpyridin-2-Amine
pdb|4EUX|B Chain B, Structure Of Neuronal Nitric Oxide Synthase Heme Domain In
Complex With
6-(5-(((3r,4r)-4-((6-Amino-4-Methylpyridin-2-Yl)methyl)
Pyrrolidin-3-Yl)oxy)pentyl)-4-Methylpyridin-2-Amine
Length = 422
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 1047 KGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSL 1106
+G +A R FD+L + +DP+ +P L EV ++H F + F+DL L
Sbjct: 212 QGWKAPRGRFDVLPLLLQANGNDPELFQIPPELVLEVPIRHPKFDW--------FKDLGL 263
Query: 1107 R 1107
+
Sbjct: 264 K 264
>pdb|1OM5|A Chain A, Structure Of Rat Neuronal Nos Heme Domain With 3-Bromo-7-
Nitroindazole Bound
pdb|1OM5|B Chain B, Structure Of Rat Neuronal Nos Heme Domain With 3-Bromo-7-
Nitroindazole Bound
pdb|1P6H|A Chain A, Rat Neuronal Nos Heme Domain With L-N(Omega)-Nitroarginine-
2,4-L-Diaminobutyric Amide Bound
pdb|1P6H|B Chain B, Rat Neuronal Nos Heme Domain With L-N(Omega)-Nitroarginine-
2,4-L-Diaminobutyric Amide Bound
pdb|1P6I|A Chain A, Rat Neuronal Nos Heme Domain With (4s)-N-(4-Amino-5-
[aminoethyl]aminopentyl)-N'-Nitroguanidine Bound
pdb|1P6I|B Chain B, Rat Neuronal Nos Heme Domain With (4s)-N-(4-Amino-5-
[aminoethyl]aminopentyl)-N'-Nitroguanidine Bound
pdb|1P6J|A Chain A, Rat Neuronal Nos Heme Domain With L-N(Omega)-Nitroarginine-
(4r)-Amino-L-Proline Amide Bound
pdb|1P6J|B Chain B, Rat Neuronal Nos Heme Domain With L-N(Omega)-Nitroarginine-
(4r)-Amino-L-Proline Amide Bound
pdb|1RS6|A Chain A, Rat Neuronal Nos Heme Domain With D-Lysine-D-Nitroarginine
Amide Bound
pdb|1RS6|B Chain B, Rat Neuronal Nos Heme Domain With D-Lysine-D-Nitroarginine
Amide Bound
pdb|1RS7|A Chain A, Rat Neuronal Nos Heme Domain With
D-Phenylalanine-D-Nitroarginine Amide Bound
pdb|1RS7|B Chain B, Rat Neuronal Nos Heme Domain With
D-Phenylalanine-D-Nitroarginine Amide Bound
Length = 421
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 1047 KGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSL 1106
+G +A R FD+L + +DP+ +P L EV ++H F + F+DL L
Sbjct: 212 QGWKAPRGRFDVLPLLLQANGNDPELFQIPPELVLEVPIRHPKFDW--------FKDLGL 263
Query: 1107 R 1107
+
Sbjct: 264 K 264
>pdb|2G6J|A Chain A, Structure Of Rat Nnos (l337n) Heme Domain (4-aminobiopterin
Bound) Complexed With No
pdb|2G6J|B Chain B, Structure Of Rat Nnos (l337n) Heme Domain (4-aminobiopterin
Bound) Complexed With No
Length = 420
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 1047 KGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSL 1106
+G +A R FD+L + +DP+ +P L EV ++H F + F+DL L
Sbjct: 210 QGWKAPRGRFDVLPLLLQANGNDPELFQIPPELVLEVPIRHPKFDW--------FKDLGL 261
Query: 1107 R 1107
+
Sbjct: 262 K 262
>pdb|3FC5|A Chain A, G586s Mutant Nnosoxy
pdb|3FC5|B Chain B, G586s Mutant Nnosoxy
Length = 422
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 1047 KGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSL 1106
+G +A R FD+L + +DP+ +P L EV ++H F + F+DL L
Sbjct: 212 QGWKAPRGRFDVLPLLLQANGNDPELFQIPPELVLEVPIRHPKFDW--------FKDLGL 263
Query: 1107 R 1107
+
Sbjct: 264 K 264
>pdb|1SLQ|A Chain A, Crystal Structure Of The Trimeric State Of The Rhesus
Rotavirus Vp4 Membrane Interaction Domain, Vp5ct
pdb|1SLQ|B Chain B, Crystal Structure Of The Trimeric State Of The Rhesus
Rotavirus Vp4 Membrane Interaction Domain, Vp5ct
pdb|1SLQ|C Chain C, Crystal Structure Of The Trimeric State Of The Rhesus
Rotavirus Vp4 Membrane Interaction Domain, Vp5ct
pdb|1SLQ|D Chain D, Crystal Structure Of The Trimeric State Of The Rhesus
Rotavirus Vp4 Membrane Interaction Domain, Vp5ct
pdb|1SLQ|E Chain E, Crystal Structure Of The Trimeric State Of The Rhesus
Rotavirus Vp4 Membrane Interaction Domain, Vp5ct
pdb|1SLQ|F Chain F, Crystal Structure Of The Trimeric State Of The Rhesus
Rotavirus Vp4 Membrane Interaction Domain, Vp5ct
Length = 278
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 33/77 (42%)
Query: 484 SGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVA 543
S V L + L LR + L +EP+ T + + L G P A+ N +E VA
Sbjct: 159 SAGVTLSTQFTDFVSLNSLRFRFRLTVEEPSFSITRTRVSRLYGLPAANPNNGKEYYEVA 218
Query: 544 NAYSFIIKLPDGFDTQV 560
+S I +P D Q
Sbjct: 219 GRFSLISLVPSNDDYQT 235
>pdb|3TBK|A Chain A, Mouse Rig-I Atpase Domain
Length = 555
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 1103 DLSLRARAGKTLALVGPSGCGKSSVIALV-----QRFYEPSSGRVMIDGKDIRKY 1152
+L+L A+ GK + P+GCGK+ V L+ ++F G+V+ I Y
Sbjct: 11 ELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVY 65
>pdb|3IYU|X Chain X, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|Y Chain Y, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|Z Chain Z, Atomic Model Of An Infectious Rotavirus Particle
Length = 776
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 33/77 (42%)
Query: 484 SGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVA 543
S V L + L LR + L +EP+ T + + L G P A+ N +E VA
Sbjct: 406 SAGVTLSTQFTDFVSLNSLRFRFRLTVEEPSFSITRTRVSRLYGLPAANPNNGKEYYEVA 465
Query: 544 NAYSFIIKLPDGFDTQV 560
+S I +P D Q
Sbjct: 466 GRFSLISLVPSNDDYQT 482
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,613,850
Number of Sequences: 62578
Number of extensions: 1189208
Number of successful extensions: 3182
Number of sequences better than 100.0: 130
Number of HSP's better than 100.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 2702
Number of HSP's gapped (non-prelim): 304
length of query: 1350
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1239
effective length of database: 8,027,179
effective search space: 9945674781
effective search space used: 9945674781
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)