BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000692
(1349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii
Effector Xcv3220 (Xopl)
Length = 328
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 1149 QLPEVLEELKIVSCPKLESIAETFFDNARLRSIQIKDCDNLRSIPKGLHNLSYLHCISIE 1208
LP+ LEEL + C L + F A L+ + +KDC NL ++P +H L+ L + +
Sbjct: 227 HLPK-LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285
Query: 1209 HCQNLVSFP 1217
C NL P
Sbjct: 286 GCVNLSRLP 294
Score = 40.4 bits (93), Expect = 0.007, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 24/116 (20%)
Query: 583 LRVLSLRRYYITEVPISIGCLRHLRYLNFSDTKIKCLPESV--------------TSLLN 628
L+ L L I +P SI L++L+ L ++ + L ++ T+L N
Sbjct: 185 LQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRN 244
Query: 629 ----------LEILILRDCLHLLKLPSSIGNLVKLLHLDIEGANLLSELPLRMKEL 674
L+ LIL+DC +LL LP I L +L LD+ G LS LP + +L
Sbjct: 245 YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
Score = 36.6 bits (83), Expect = 0.11, Method: Composition-based stats.
Identities = 56/220 (25%), Positives = 90/220 (40%), Gaps = 56/220 (25%)
Query: 858 PNRENDEHLQAFPHLRKLSIKKCPKLSGRLPNHLPSLEKIVITECMQLVVSLPSLPAACK 917
P R + + LR+LSI+ CP+L+ LP L S + + Q +V+L SL +
Sbjct: 138 PLRALPASIASLNRLRELSIRACPELT-ELPEPLASTDA---SGEHQGLVNLQSL----R 189
Query: 918 LKIDGCKRLVCDGPSESNSLSNMTLYNISEFE----NWSSQKFQKVEHLKIVGCEGFINE 973
L+ G + L P+ +L N+ I + K+E L + GC N
Sbjct: 190 LEWTGIRSL----PASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY 245
Query: 974 ICLGKPLEGLQSLTSLKDLLIGNCPTLVSLPKACFLSNLREITIEDCNALTSLTDGMIHN 1033
P+ G ++ LK L++ +C L++LP IH
Sbjct: 246 ----PPIFGGRA--PLKRLILKDCSNLLTLPLD------------------------IHR 275
Query: 1034 NARLEVLRIKGCHSLTSISR--GQLPSSLKAIEINNCQIL 1071
+LE L ++GC +L+ + QLP+ NC IL
Sbjct: 276 LTQLEKLDLRGCVNLSRLPSLIAQLPA--------NCIIL 307
Score = 34.7 bits (78), Expect = 0.32, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 586 LSLRRYYITEVPISIGCLRHLRYLNFSDTKIKCLPESVTSLLNLEILIL-RDCLHLLKLP 644
L LR + + P L HL++ + LP++ LE L L R+ L LP
Sbjct: 86 LELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLR--ALP 143
Query: 645 SSIGNLVKLLHLDIEGANLLSELP 668
+SI +L +L L I L+ELP
Sbjct: 144 ASIASLNRLRELSIRACPELTELP 167
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 593 ITEVPISIGCLRHLRYLNFSDTKIKCLPESVTSLLNLEILILRDCLHLLKLPSSIGN--- 649
+ E+P + L L + ++ LP S+ SL L L +R C L +LP + +
Sbjct: 116 LXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDA 175
Query: 650 ------LVKLLHLDIEGANLLSELPLRMKELKCLQTL 680
LV L L +E + S LP + L+ L++L
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSL 211
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 579 KFKKLRVLSLRRYYITEVPISIGCLRHLRYLNFSDTKIKCLPESVTSLLNLEILILRDCL 638
K+ L L L +TE+P I L +LR L+ S ++ LP + S L+ D +
Sbjct: 245 KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM 304
Query: 639 HLLKLPSSIGNLVKLLHLDIEGANLLSELPLRMKELKCL 677
+ LP GNL L L +EG PL + LK L
Sbjct: 305 -VTTLPWEFGNLCNLQFLGVEGN------PLEKQFLKIL 336
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 567 YISPMVLSDLLPKFKKL---RVLSLRRYYITEVPISIGCLRHLRYLNFSDTKIKCLPESV 623
Y++ L++L + K L RVL L +T +P +G L+Y F D + LP
Sbjct: 253 YLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEF 312
Query: 624 TSLLNLEIL 632
+L NL+ L
Sbjct: 313 GNLCNLQFL 321
>pdb|4H09|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|B Chain B, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|C Chain C, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|D Chain D, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|E Chain E, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
Length = 379
Score = 35.8 bits (81), Expect = 0.15, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 984 QSLTSLKDLLIGNCPTLVSLPKACFLSNLREITIEDCNALTSLTDGMIHNNARLEVLRIK 1043
+++TS+ L+ NC L +L F + ++ + C+ ++LT ++ +N+ +E L +
Sbjct: 249 KNVTSIGSFLLQNCTALKTLN---FYAKVKTVPYLLCSGCSNLTK-VVXDNSAIETLEPR 304
Query: 1044 GCHSLTSISRGQLPSSLKAIEI---NNCQILRCV 1074
+S LP++LK I++ NC+ L +
Sbjct: 305 VFXDCVKLSSVTLPTALKTIQVYAFKNCKALSTI 338
>pdb|1R4X|A Chain A, Crystal Structure Analys Of The Gamma-Copi Appendage Domain
Length = 275
Score = 33.9 bits (76), Expect = 0.61, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Query: 995 GNCPTLVSLPK------ACFLSNLREITIEDCNALTSLTD 1028
G C TLV+LPK AC S + + T++DC+ T TD
Sbjct: 105 GTCYTLVALPKEDPTAVACTFSCMMKFTVKDCDPTTGETD 144
>pdb|3DZD|A Chain A, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
pdb|3DZD|B Chain B, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
Length = 368
Score = 33.5 bits (75), Expect = 0.74, Method: Composition-based stats.
Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 13/143 (9%)
Query: 231 VCVSDDFDVLRIS-KVILESITLSPCELKDLNSVQLKLKEALFKKKYLIVLDDVWSKSYD 289
V V DD + + S ILE P K L + K+KE F +++ DVW D
Sbjct: 3 VLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELFFP----VIVLDVWXPDGD 58
Query: 290 LWQALKSPFMVGAPDSRIIVTT--RSVDVAL-TMGSGGYCELKLLSDDDCWSVFVKHAFE 346
+ +PDS +IV T SVD A+ + G Y L+ + + + +KHAFE
Sbjct: 59 GVNFIDF-IKENSPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFE 117
Query: 347 --SRDAGTHENLESIRQ--KVVE 365
S+ A E +E + + K++E
Sbjct: 118 EYSKKAPPQEEIEFVGEHPKILE 140
>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
Intracellular Mla Immune Receptors Defines A Minimal
Functional Module For Triggering Cell Death
Length = 115
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 31 EGVRSKLKAWEKTLKTIEAVLIDAEE--KQLTNRAVKIWLDDLRDLAYDAEDILDEF 85
+GV+ ++ K L++ A LI E ++ + K+W D++R+L+Y ED++D+F
Sbjct: 22 KGVKKNIEDLGKELESXNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKF 78
>pdb|4AE4|A Chain A, The Ubap1 Subunit Of Escrt-I Interacts With Ubiquitin Via
A Novel Souba Domain
pdb|4AE4|B Chain B, The Ubap1 Subunit Of Escrt-I Interacts With Ubiquitin Via
A Novel Souba Domain
Length = 118
Score = 33.1 bits (74), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 13/88 (14%)
Query: 673 ELKCLQTLTNFIVS--------KGSGCTLKDLKNWKFLRGRLCISGLENVINSQEANEAM 724
E +C++T+ N S K +G ++ + ++ F G+LC G + ++ +
Sbjct: 8 ERQCVETVVNXGYSYECVLRAXKAAGANIEQILDYLFAHGQLCEKGFDPLLVEEALEXHQ 67
Query: 725 LREKKGLKFLQL-----EWGAELDDSRD 747
E+K +FLQL E G EL D ++
Sbjct: 68 CSEEKXXEFLQLXSKFKEXGFELKDIKE 95
>pdb|4AYF|A Chain A, Crystal Structure Of The Complex Of The Caf1m:caf1
Chaperone:subunit Preassembly Complex Carrying The
Tyr40ala Mutation In The Caf1m Chaperone
Length = 235
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 88/254 (34%), Gaps = 54/254 (21%)
Query: 1115 PSLTCLSSRYQLPVTLKRLDIQM-CSNFMVLTSECQLPEVLEELKIVSCPKLESIAETFF 1173
P + S Y + + R+ + + MV Q VL + +I K + + F
Sbjct: 3 PDIKFASKEYGVTIGESRIIYPLDAAGVMVSVKNTQDAPVLIQSRIYDENKEKESEDPFV 62
Query: 1174 DNARLRSIQIKDCDNLR------SIPKGLHNLSYL---------HCISIEHCQNLVSFPE 1218
L + K ++LR P+ +L +L I ++ N F
Sbjct: 63 VTPPLFRLDAKQQNSLRIAQAGGVFPRDKESLKWLCVKGIPPKDEDIWVDDATNKQKFNP 122
Query: 1219 DLLPGAIIEFSVQNCAK-------LKGLRVGMFNSLQDLLLWQCPGIQFFPEE--GLSAN 1269
D G ++F++ NC K LKG + +L W+ G + E N
Sbjct: 123 DKDVGVFVQFAINNCIKLLVRPNELKGTPIQFAENLS----WKVDGGKLIAENPSPFYMN 178
Query: 1270 VAYLGISGDNI----YKPLVKWGFHKFTSLTALCINGCSDAVSFPDEEKGMILPTSLTWI 1325
+ L G +I P W F D KG+ +++W
Sbjct: 179 IGELTFGGKSIPSHYIPPKSTWAF---------------------DLPKGLAGARNVSWR 217
Query: 1326 IISDFPKLERLSSK 1339
II+D L+RL SK
Sbjct: 218 IINDQGGLDRLYSK 231
>pdb|1P5U|A Chain A, X-Ray Structure Of The Ternary Caf1m:caf1:caf1
Chaperone:subunit:subunit Complex
pdb|1P5V|A Chain A, X-Ray Structure Of The Caf1m:caf1 Chaperone:subunit
Preassembly Complex
pdb|1Z9S|A Chain A, Crystal Structure Of The Native Chaperone:subunit:subunit
Caf1m:caf1:caf1 Complex
pdb|2OS7|A Chain A, Caf1m Periplasmic Chaperone Tetramer
pdb|2OS7|B Chain B, Caf1m Periplasmic Chaperone Tetramer
pdb|2OS7|C Chain C, Caf1m Periplasmic Chaperone Tetramer
pdb|2OS7|D Chain D, Caf1m Periplasmic Chaperone Tetramer
pdb|2OS7|E Chain E, Caf1m Periplasmic Chaperone Tetramer
pdb|2OS7|F Chain F, Caf1m Periplasmic Chaperone Tetramer
pdb|3DOS|A Chain A, Crystal Structure Of The Complex Of The Caf1m Chaperone With
The Mini-Fiber Of Two Caf1 Subunits (Caf1:caf1), Carrying
The Thr7phe And Ala9val Mutations In The Gd Donor Strand
pdb|3DOS|D Chain D, Crystal Structure Of The Complex Of The Caf1m Chaperone With
The Mini-Fiber Of Two Caf1 Subunits (Caf1:caf1), Carrying
The Thr7phe And Ala9val Mutations In The Gd Donor Strand
pdb|3DPB|A Chain A, Crystal Structure Of The Complex Of The Caf1m Chaperone With
The Mini-Fiber Of Two Caf1 Subunits (Caf1:caf1), Carrying
The Ala9val, Ala11val, And Leu13val Mutations In The Gd
Donor Strand
pdb|3DSN|A Chain A, Crystal Structure Of The Complex Of The Caf1m Chaperone With
The Mini-Fiber Of Two Caf1 Subunits (Caf1:caf1), Carrying
The Thr7phe Mutation In The Gd Donor Strand
pdb|3DSN|D Chain D, Crystal Structure Of The Complex Of The Caf1m Chaperone With
The Mini-Fiber Of Two Caf1 Subunits (Caf1:caf1), Carrying
The Thr7phe Mutation In The Gd Donor Strand
pdb|4B0M|M Chain M, Complex Of The Caf1an Usher Domain, Caf1m Chaperone And Caf1
Subunit From Yersinia Pestis
Length = 235
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 88/254 (34%), Gaps = 54/254 (21%)
Query: 1115 PSLTCLSSRYQLPVTLKRLDIQM-CSNFMVLTSECQLPEVLEELKIVSCPKLESIAETFF 1173
P + S Y + + R+ + + MV Q VL + +I K + + F
Sbjct: 3 PDIKFASKEYGVTIGESRIIYPLDAAGVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFV 62
Query: 1174 DNARLRSIQIKDCDNLR------SIPKGLHNLSYL---------HCISIEHCQNLVSFPE 1218
L + K ++LR P+ +L +L I ++ N F
Sbjct: 63 VTPPLFRLDAKQQNSLRIAQAGGVFPRDKESLKWLCVKGIPPKDEDIWVDDATNKQKFNP 122
Query: 1219 DLLPGAIIEFSVQNCAK-------LKGLRVGMFNSLQDLLLWQCPGIQFFPEE--GLSAN 1269
D G ++F++ NC K LKG + +L W+ G + E N
Sbjct: 123 DKDVGVFVQFAINNCIKLLVRPNELKGTPIQFAENLS----WKVDGGKLIAENPSPFYMN 178
Query: 1270 VAYLGISGDNI----YKPLVKWGFHKFTSLTALCINGCSDAVSFPDEEKGMILPTSLTWI 1325
+ L G +I P W F D KG+ +++W
Sbjct: 179 IGELTFGGKSIPSHYIPPKSTWAF---------------------DLPKGLAGARNVSWR 217
Query: 1326 IISDFPKLERLSSK 1339
II+D L+RL SK
Sbjct: 218 IINDQGGLDRLYSK 231
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 31.6 bits (70), Expect = 3.2, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 190 PNDDSSFRL--IPIVGMGGIGKTTLAREVYNDKSVEDFDP 227
P +S L + +VG GG+GK+ L + D+ VED++P
Sbjct: 6 PKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEP 45
>pdb|1PZD|A Chain A, Structural Identification Of A Conserved Appendage Domain In
The Carboxyl-terminus Of The Copi Gamma-subunit
Length = 322
Score = 31.6 bits (70), Expect = 3.3, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
Query: 995 GNCPTLVSLPK------ACFLSNLREITIEDCNALTSLTD 1028
G C TLV+LPK AC S + + T++DC+ T D
Sbjct: 152 GTCYTLVALPKEDPTAVACTFSCVMKFTVKDCDPTTGEAD 191
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 31.6 bits (70), Expect = 3.4, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 201 IVGMGGIGKTTLAREVYNDKSVEDFDP 227
+VG GG+GK+ L + D+ VED++P
Sbjct: 9 MVGSGGVGKSALTLQFMYDEFVEDYEP 35
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 31.6 bits (70), Expect = 3.5, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 201 IVGMGGIGKTTLAREVYNDKSVEDFDP 227
+VG GG+GK+ L + D+ VED++P
Sbjct: 12 MVGSGGVGKSALTLQFMYDEFVEDYEP 38
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 31.6 bits (70), Expect = 3.5, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 201 IVGMGGIGKTTLAREVYNDKSVEDFDP 227
+VG GG+GK+ L + D+ VED++P
Sbjct: 8 MVGSGGVGKSALTLQFMYDEFVEDYEP 34
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 31.6 bits (70), Expect = 3.5, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 201 IVGMGGIGKTTLAREVYNDKSVEDFDP 227
+VG GG+GK+ L + D+ VED++P
Sbjct: 23 MVGSGGVGKSALTLQFMYDEFVEDYEP 49
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 31.6 bits (70), Expect = 3.5, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 201 IVGMGGIGKTTLAREVYNDKSVEDFDP 227
+VG GG+GK+ L + D+ VED++P
Sbjct: 11 MVGSGGVGKSALTLQFMYDEFVEDYEP 37
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 201 IVGMGGIGKTTLAREVYNDKSVEDFDP 227
+VG GG+GK+ L + D+ VED++P
Sbjct: 11 MVGSGGVGKSALTLQFMYDEFVEDYEP 37
>pdb|1ZIT|A Chain A, Structure Of The Receiver Domain Of Ntrc4 From Aquifex
Aeolicus
pdb|2JRL|A Chain A, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
pdb|2JRL|B Chain B, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
Length = 121
Score = 31.2 bits (69), Expect = 4.0, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 9/120 (7%)
Query: 231 VCVSDDFDVLRIS-KVILESITLSPCELKDLNSVQLKLKEALFKKKYLIVLDDVWSKSYD 289
V V DD + + S ILE P K L + K+KE F +++ DVW D
Sbjct: 4 VLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELFFP----VIVLDVWMPDGD 59
Query: 290 LWQALKSPFMVGAPDSRIIVTT--RSVDVAL-TMGSGGYCELKLLSDDDCWSVFVKHAFE 346
+ +PDS +IV T SVD A+ + G Y L+ + + + +KHAFE
Sbjct: 60 GVNFIDF-IKENSPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFE 118
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 11/137 (8%)
Query: 579 KFKKLRVLSLRRYYITEVPISI-GCLRHLRYLNFSDTKIKCLPESV-TSLLNL-EILILR 635
+ KLR+L L + +P I L++L L +D K++ LP V L+NL E+ + R
Sbjct: 59 RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118
Query: 636 DCLHLLKLPSSIGNLVKLLHLDIEGANLLSELPL----RMKELKCLQTLTNFI--VSKGS 689
+ L L P +L KL +L + G N L LP ++ LK L+ N + V +G+
Sbjct: 119 NQLKSLP-PRVFDSLTKLTYLSL-GYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGA 176
Query: 690 GCTLKDLKNWKFLRGRL 706
L +LK K +L
Sbjct: 177 FDKLTELKTLKLDNNQL 193
>pdb|2ZF5|O Chain O, Crystal Structure Of Highly Thermostable Glycerol Kinase
From A Hyperthermophilic Archaeon
pdb|2ZF5|Y Chain Y, Crystal Structure Of Highly Thermostable Glycerol Kinase
From A Hyperthermophilic Archaeon
Length = 497
Score = 30.4 bits (67), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 427 AYCAILPKDYEFEEEELVLLWIAEGLIQPSKDSKQLEDL 465
AY A L DY + E+ LW AE + +P D K E L
Sbjct: 435 AYLAGLAVDYWADTREIAELWKAERIFEPKMDEKTRERL 473
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,719,753
Number of Sequences: 62578
Number of extensions: 1592896
Number of successful extensions: 3825
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 3787
Number of HSP's gapped (non-prelim): 45
length of query: 1349
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1238
effective length of database: 8,027,179
effective search space: 9937647602
effective search space used: 9937647602
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)