Query 000692
Match_columns 1349
No_of_seqs 677 out of 5436
Neff 10.2
Searched_HMMs 46136
Date Mon Apr 1 22:02:35 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000692.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000692hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.3E-84 5.1E-89 794.7 45.0 700 6-740 3-728 (889)
2 PLN03210 Resistant to P. syrin 100.0 7.5E-62 1.6E-66 636.1 51.3 435 167-667 182-650 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 3.3E-41 7.1E-46 379.6 15.2 275 174-455 1-284 (287)
4 PLN00113 leucine-rich repeat r 100.0 2.5E-34 5.4E-39 380.4 27.9 505 574-1232 86-603 (968)
5 PLN00113 leucine-rich repeat r 100.0 1.6E-33 3.4E-38 372.7 26.5 510 545-1213 88-607 (968)
6 KOG0472 Leucine-rich repeat pr 99.9 1.3E-26 2.9E-31 241.3 -12.0 280 984-1304 249-539 (565)
7 KOG0472 Leucine-rich repeat pr 99.9 4.2E-27 9.2E-32 245.0 -15.7 462 575-1212 62-540 (565)
8 PLN03210 Resistant to P. syrin 99.9 9.6E-22 2.1E-26 258.8 24.4 269 956-1263 610-887 (1153)
9 KOG4194 Membrane glycoprotein 99.9 4.7E-23 1E-27 224.8 5.9 289 582-1069 79-376 (873)
10 KOG0618 Serine/threonine phosp 99.9 3.9E-24 8.5E-29 246.6 -4.5 100 579-680 43-142 (1081)
11 KOG0618 Serine/threonine phosp 99.9 3.6E-24 7.9E-29 246.9 -5.8 263 986-1302 240-509 (1081)
12 KOG4194 Membrane glycoprotein 99.9 1.8E-22 3.9E-27 220.2 5.7 326 978-1312 93-434 (873)
13 KOG0444 Cytoskeletal regulator 99.8 9.4E-23 2E-27 223.3 -5.3 83 579-662 5-89 (1255)
14 KOG0444 Cytoskeletal regulator 99.8 3.5E-21 7.6E-26 211.1 -7.0 106 566-672 17-123 (1255)
15 PRK15387 E3 ubiquitin-protein 99.5 5.6E-14 1.2E-18 170.4 16.3 252 991-1304 205-456 (788)
16 PRK15387 E3 ubiquitin-protein 99.5 1.9E-13 4.1E-18 165.8 15.5 258 1010-1334 201-458 (788)
17 KOG4237 Extracellular matrix p 99.4 3.4E-15 7.4E-20 157.0 -5.6 109 571-680 81-193 (498)
18 KOG4237 Extracellular matrix p 99.4 4.2E-14 9.1E-19 148.9 -0.1 181 1124-1312 270-482 (498)
19 PRK04841 transcriptional regul 99.4 2.7E-11 5.9E-16 160.4 25.5 292 168-503 13-332 (903)
20 PRK15370 E3 ubiquitin-protein 99.3 7E-12 1.5E-16 153.8 11.4 244 987-1279 178-426 (754)
21 KOG4658 Apoptotic ATPase [Sign 99.3 3.3E-12 7.2E-17 159.1 7.4 123 580-703 544-671 (889)
22 KOG0617 Ras suppressor protein 99.3 1.6E-13 3.5E-18 127.0 -4.3 84 579-663 31-114 (264)
23 PRK15370 E3 ubiquitin-protein 99.3 1.9E-11 4.1E-16 150.1 11.6 83 581-671 178-260 (754)
24 PRK00411 cdc6 cell division co 99.2 1.7E-09 3.6E-14 127.8 27.1 299 168-482 29-358 (394)
25 KOG0617 Ras suppressor protein 99.2 5.7E-13 1.2E-17 123.5 -5.8 108 573-681 48-156 (264)
26 TIGR03015 pepcterm_ATPase puta 99.1 6.3E-09 1.4E-13 115.8 22.7 182 196-381 43-242 (269)
27 TIGR02928 orc1/cdc6 family rep 99.1 2.6E-08 5.5E-13 116.4 26.9 299 169-482 15-350 (365)
28 PF01637 Arch_ATPase: Archaeal 99.1 1.2E-09 2.7E-14 119.2 13.3 195 171-376 1-233 (234)
29 PRK00080 ruvB Holliday junctio 99.0 6.4E-09 1.4E-13 118.2 18.3 275 169-483 25-311 (328)
30 COG2909 MalT ATP-dependent tra 99.0 1.2E-08 2.5E-13 120.1 19.7 294 169-503 19-338 (894)
31 TIGR00635 ruvB Holliday juncti 99.0 2.6E-08 5.7E-13 112.8 19.7 275 170-483 5-290 (305)
32 PF05729 NACHT: NACHT domain 98.9 6.7E-09 1.5E-13 106.3 10.7 143 197-344 1-163 (166)
33 PRK15386 type III secretion pr 98.8 2.3E-08 5E-13 111.2 9.9 158 1102-1279 50-211 (426)
34 PTZ00112 origin recognition co 98.7 1.9E-06 4.1E-11 102.5 24.9 209 169-381 755-986 (1164)
35 KOG4341 F-box protein containi 98.7 3.9E-10 8.5E-15 120.7 -7.0 276 958-1281 139-439 (483)
36 cd00116 LRR_RI Leucine-rich re 98.6 4.3E-09 9.4E-14 121.0 -1.6 107 1103-1210 80-203 (319)
37 PRK15386 type III secretion pr 98.6 2.5E-07 5.4E-12 103.1 10.9 60 1009-1074 51-110 (426)
38 KOG4341 F-box protein containi 98.6 1.1E-09 2.4E-14 117.3 -7.9 279 1010-1308 138-441 (483)
39 PRK06893 DNA replication initi 98.5 1.4E-06 3.1E-11 93.0 15.5 155 197-381 40-207 (229)
40 PRK13342 recombination factor 98.5 1.5E-06 3.2E-11 102.0 15.8 178 170-380 13-199 (413)
41 PTZ00202 tuzin; Provisional 98.5 9.5E-06 2.1E-10 89.6 20.4 170 164-344 257-434 (550)
42 PF14580 LRR_9: Leucine-rich r 98.5 1.2E-07 2.7E-12 94.2 5.1 106 579-687 40-152 (175)
43 cd00116 LRR_RI Leucine-rich re 98.4 6.2E-08 1.3E-12 111.4 2.0 242 575-851 17-289 (319)
44 PF13401 AAA_22: AAA domain; P 98.4 5E-07 1.1E-11 87.9 8.0 116 196-313 4-125 (131)
45 COG2256 MGS1 ATPase related to 98.4 7.6E-06 1.6E-10 88.8 17.2 203 194-421 46-266 (436)
46 TIGR03420 DnaA_homol_Hda DnaA 98.4 2.9E-06 6.2E-11 91.6 14.3 172 174-381 22-205 (226)
47 KOG0532 Leucine-rich repeat (L 98.4 1.3E-08 2.7E-13 113.4 -4.1 173 577-820 94-270 (722)
48 PRK07003 DNA polymerase III su 98.4 1.6E-05 3.5E-10 94.7 21.1 195 169-379 16-223 (830)
49 PRK04195 replication factor C 98.4 2.4E-05 5.3E-10 93.8 23.3 247 169-455 14-271 (482)
50 PRK14960 DNA polymerase III su 98.4 1.9E-05 4.2E-10 93.2 21.5 192 169-375 15-217 (702)
51 PRK14961 DNA polymerase III su 98.4 1.2E-05 2.6E-10 92.5 19.0 189 169-374 16-217 (363)
52 COG3899 Predicted ATPase [Gene 98.4 1.3E-05 2.7E-10 101.6 20.3 309 171-501 2-384 (849)
53 COG4886 Leucine-rich repeat (L 98.4 1.9E-07 4.2E-12 110.4 3.9 103 577-681 112-215 (394)
54 PF05496 RuvB_N: Holliday junc 98.3 6.8E-06 1.5E-10 83.3 13.5 182 169-382 24-226 (233)
55 COG3903 Predicted ATPase [Gene 98.3 1.5E-06 3.3E-11 94.9 9.6 291 195-503 13-314 (414)
56 PF13173 AAA_14: AAA domain 98.3 2.5E-06 5.4E-11 82.0 9.5 119 197-336 3-127 (128)
57 KOG3207 Beta-tubulin folding c 98.3 1.5E-07 3.2E-12 101.9 0.9 202 985-1210 119-336 (505)
58 PF14580 LRR_9: Leucine-rich r 98.3 5.8E-07 1.3E-11 89.5 4.6 85 579-667 17-103 (175)
59 PRK12402 replication factor C 98.3 1.8E-05 3.9E-10 91.5 17.6 198 169-376 15-225 (337)
60 PRK14949 DNA polymerase III su 98.3 2E-05 4.4E-10 96.0 18.2 181 169-376 16-219 (944)
61 PF13855 LRR_8: Leucine rich r 98.3 9.9E-07 2.2E-11 71.7 4.9 57 581-637 1-59 (61)
62 PRK14963 DNA polymerase III su 98.3 4.5E-06 9.8E-11 98.8 12.4 196 169-374 14-214 (504)
63 COG1474 CDC6 Cdc6-related prot 98.3 4.3E-05 9.4E-10 86.6 19.6 204 171-376 19-237 (366)
64 PLN03150 hypothetical protein; 98.2 1.1E-06 2.3E-11 108.6 6.4 92 582-673 419-512 (623)
65 PRK05564 DNA polymerase III su 98.2 2.9E-05 6.3E-10 87.8 17.5 177 170-376 5-189 (313)
66 PF13191 AAA_16: AAA ATPase do 98.2 1.7E-06 3.8E-11 90.1 6.9 77 170-250 1-82 (185)
67 cd00009 AAA The AAA+ (ATPases 98.2 8.3E-06 1.8E-10 81.6 11.3 125 172-315 1-131 (151)
68 PRK06645 DNA polymerase III su 98.2 5.6E-05 1.2E-09 89.1 19.5 193 169-374 21-226 (507)
69 KOG0532 Leucine-rich repeat (L 98.2 7.3E-08 1.6E-12 107.5 -4.4 181 579-831 73-254 (722)
70 PRK12323 DNA polymerase III su 98.2 5.3E-05 1.2E-09 89.3 18.6 199 169-377 16-225 (700)
71 PLN03025 replication factor C 98.2 4.3E-05 9.2E-10 86.6 17.3 182 169-374 13-197 (319)
72 PRK08727 hypothetical protein; 98.2 3E-05 6.4E-10 83.1 15.1 148 197-374 42-201 (233)
73 cd01128 rho_factor Transcripti 98.2 3.4E-06 7.3E-11 89.9 7.6 89 196-284 16-113 (249)
74 PRK14957 DNA polymerase III su 98.2 6.6E-05 1.4E-09 89.0 19.0 186 169-381 16-225 (546)
75 PRK14956 DNA polymerase III su 98.2 1.2E-05 2.6E-10 92.4 12.3 195 169-374 18-219 (484)
76 PRK08084 DNA replication initi 98.2 3.7E-05 8.1E-10 82.5 15.1 155 197-381 46-213 (235)
77 KOG3207 Beta-tubulin folding c 98.1 3.5E-07 7.7E-12 99.1 -0.6 160 1007-1216 118-286 (505)
78 TIGR02903 spore_lon_C ATP-depe 98.1 4E-05 8.7E-10 93.8 16.9 202 169-380 154-398 (615)
79 PRK00440 rfc replication facto 98.1 8.1E-05 1.8E-09 85.3 18.7 181 169-375 17-201 (319)
80 PRK14962 DNA polymerase III su 98.1 7.6E-05 1.7E-09 87.7 18.2 187 169-381 14-223 (472)
81 KOG1259 Nischarin, modulator o 98.1 4.2E-07 9.2E-12 92.9 -0.7 82 579-662 282-363 (490)
82 PRK08691 DNA polymerase III su 98.1 0.00011 2.3E-09 88.0 18.9 193 169-376 16-219 (709)
83 PF13855 LRR_8: Leucine rich r 98.1 3.2E-06 6.9E-11 68.7 4.3 58 604-662 1-60 (61)
84 PF14516 AAA_35: AAA-like doma 98.1 0.00037 8.1E-09 78.9 22.5 203 166-384 8-246 (331)
85 PF00308 Bac_DnaA: Bacterial d 98.1 9.1E-05 2E-09 78.3 16.4 164 195-380 33-211 (219)
86 PRK07471 DNA polymerase III su 98.1 0.0001 2.2E-09 83.9 17.6 196 169-378 19-239 (365)
87 PRK09087 hypothetical protein; 98.1 5.2E-05 1.1E-09 80.3 14.2 143 197-380 45-198 (226)
88 PRK05896 DNA polymerase III su 98.1 9.2E-05 2E-09 87.7 17.5 196 169-379 16-223 (605)
89 PRK07994 DNA polymerase III su 98.1 8.2E-05 1.8E-09 89.6 17.3 193 169-377 16-220 (647)
90 PRK08903 DnaA regulatory inact 98.1 7.5E-05 1.6E-09 80.4 15.3 153 196-382 42-204 (227)
91 TIGR02397 dnaX_nterm DNA polym 98.0 0.00022 4.8E-09 83.0 20.1 184 169-378 14-219 (355)
92 PRK07940 DNA polymerase III su 98.0 0.00013 2.7E-09 83.7 17.2 191 170-377 6-213 (394)
93 PRK14959 DNA polymerase III su 98.0 0.00049 1.1E-08 82.2 22.3 197 169-381 16-225 (624)
94 PLN03150 hypothetical protein; 98.0 6.7E-06 1.5E-10 101.6 7.2 96 573-668 434-532 (623)
95 PRK09376 rho transcription ter 98.0 1E-05 2.2E-10 89.3 7.7 101 179-284 157-266 (416)
96 TIGR00678 holB DNA polymerase 98.0 0.00012 2.5E-09 76.1 15.2 91 273-373 95-187 (188)
97 PF12799 LRR_4: Leucine Rich r 98.0 5.5E-06 1.2E-10 61.1 3.7 39 582-620 2-40 (44)
98 COG2255 RuvB Holliday junction 98.0 0.00045 9.8E-09 71.6 18.6 181 169-381 26-227 (332)
99 PRK14964 DNA polymerase III su 98.0 0.00015 3.2E-09 84.7 17.4 180 169-374 13-214 (491)
100 PRK05642 DNA replication initi 98.0 0.0001 2.2E-09 78.9 15.0 156 196-381 45-212 (234)
101 PRK14951 DNA polymerase III su 98.0 0.00016 3.6E-09 86.9 18.2 195 169-376 16-224 (618)
102 PRK13341 recombination factor 98.0 8.9E-05 1.9E-09 91.5 16.1 169 169-372 28-212 (725)
103 PF05621 TniB: Bacterial TniB 98.0 0.00027 5.8E-09 75.7 17.5 195 176-374 44-258 (302)
104 PRK09112 DNA polymerase III su 98.0 0.00018 3.9E-09 81.3 17.2 196 168-378 22-241 (351)
105 PRK14955 DNA polymerase III su 98.0 0.00013 2.7E-09 85.2 16.6 196 169-374 16-225 (397)
106 PRK14958 DNA polymerase III su 98.0 0.00016 3.5E-09 86.1 17.6 182 169-376 16-219 (509)
107 KOG2120 SCF ubiquitin ligase, 98.0 1.4E-07 3.1E-12 96.5 -6.8 106 1129-1234 186-297 (419)
108 PRK14969 DNA polymerase III su 98.0 0.00024 5.2E-09 85.3 19.1 186 169-380 16-224 (527)
109 KOG1259 Nischarin, modulator o 98.0 1.7E-06 3.7E-11 88.6 0.7 107 572-682 298-406 (490)
110 KOG2028 ATPase related to the 98.0 8.6E-05 1.9E-09 78.7 13.0 158 194-372 160-331 (554)
111 PRK09111 DNA polymerase III su 97.9 0.00029 6.3E-09 85.1 18.8 196 169-377 24-233 (598)
112 COG4886 Leucine-rich repeat (L 97.9 8.5E-06 1.8E-10 96.4 4.9 96 584-681 96-192 (394)
113 PRK14087 dnaA chromosomal repl 97.9 0.00024 5.3E-09 83.5 16.7 170 196-381 141-323 (450)
114 KOG2543 Origin recognition com 97.9 0.00058 1.2E-08 73.8 17.5 169 168-343 5-192 (438)
115 PRK07133 DNA polymerase III su 97.9 0.00058 1.3E-08 82.9 19.1 193 169-378 18-221 (725)
116 TIGR01242 26Sp45 26S proteasom 97.9 0.00012 2.7E-09 84.6 13.0 178 169-371 122-328 (364)
117 PRK14970 DNA polymerase III su 97.8 0.00061 1.3E-08 79.3 18.5 180 169-374 17-206 (367)
118 TIGR00767 rho transcription te 97.8 3.7E-05 8.1E-10 85.6 7.8 90 195-284 167-265 (415)
119 PRK07764 DNA polymerase III su 97.8 0.00053 1.1E-08 85.9 18.5 191 169-375 15-219 (824)
120 PRK06620 hypothetical protein; 97.8 0.00092 2E-08 70.2 17.6 137 197-376 45-188 (214)
121 PRK08451 DNA polymerase III su 97.8 0.0011 2.5E-08 78.2 20.1 193 169-377 14-218 (535)
122 PF12799 LRR_4: Leucine Rich r 97.8 2.4E-05 5.1E-10 57.8 3.9 40 604-644 1-40 (44)
123 PRK14950 DNA polymerase III su 97.8 0.00036 7.7E-09 85.5 16.5 197 169-379 16-223 (585)
124 PRK14954 DNA polymerase III su 97.8 0.00092 2E-08 81.0 19.4 200 169-377 16-229 (620)
125 PRK14952 DNA polymerase III su 97.8 0.0011 2.5E-08 79.6 19.8 197 169-381 13-224 (584)
126 KOG2227 Pre-initiation complex 97.8 0.00061 1.3E-08 75.7 15.9 211 168-380 149-375 (529)
127 PRK06305 DNA polymerase III su 97.8 0.0012 2.6E-08 77.9 19.6 182 169-377 17-223 (451)
128 PRK14953 DNA polymerase III su 97.8 0.0014 2.9E-08 77.8 20.2 183 169-378 16-221 (486)
129 TIGR02881 spore_V_K stage V sp 97.7 0.00058 1.3E-08 74.9 15.5 158 170-345 7-192 (261)
130 CHL00181 cbbX CbbX; Provisiona 97.7 0.0015 3.2E-08 72.1 18.2 135 196-346 59-211 (287)
131 PRK14971 DNA polymerase III su 97.7 0.0016 3.4E-08 79.6 19.4 179 169-374 17-219 (614)
132 PHA02544 44 clamp loader, smal 97.7 0.0004 8.8E-09 79.2 13.5 148 169-342 21-171 (316)
133 KOG0989 Replication factor C, 97.7 0.00051 1.1E-08 72.1 12.3 182 169-371 36-224 (346)
134 TIGR02880 cbbX_cfxQ probable R 97.6 0.0013 2.9E-08 72.5 16.4 133 197-345 59-209 (284)
135 TIGR00362 DnaA chromosomal rep 97.6 0.00098 2.1E-08 78.5 16.4 161 196-376 136-309 (405)
136 KOG2120 SCF ubiquitin ligase, 97.6 1.5E-06 3.3E-11 89.2 -6.3 62 1011-1072 186-248 (419)
137 PRK14088 dnaA chromosomal repl 97.6 0.0015 3.2E-08 77.0 17.4 162 196-376 130-304 (440)
138 PRK14948 DNA polymerase III su 97.6 0.0011 2.4E-08 80.8 16.7 197 169-378 16-223 (620)
139 PRK06647 DNA polymerase III su 97.6 0.0035 7.6E-08 75.6 20.0 192 169-376 16-219 (563)
140 TIGR02639 ClpA ATP-dependent C 97.6 0.00056 1.2E-08 86.5 13.9 154 170-344 183-358 (731)
141 PRK03992 proteasome-activating 97.6 0.00043 9.3E-09 80.3 11.6 177 169-370 131-336 (389)
142 TIGR03345 VI_ClpV1 type VI sec 97.6 0.00068 1.5E-08 86.2 14.3 155 169-344 187-363 (852)
143 PRK11331 5-methylcytosine-spec 97.6 0.00031 6.8E-09 79.9 10.0 107 170-288 176-286 (459)
144 PRK12422 chromosomal replicati 97.5 0.0032 6.9E-08 74.0 18.1 153 196-371 141-307 (445)
145 PRK05563 DNA polymerase III su 97.5 0.0038 8.2E-08 75.8 18.9 191 169-375 16-218 (559)
146 KOG4579 Leucine-rich repeat (L 97.5 9.2E-06 2E-10 73.8 -2.6 97 582-680 28-128 (177)
147 PRK14965 DNA polymerase III su 97.5 0.0032 7E-08 76.8 18.0 195 169-379 16-223 (576)
148 PRK00149 dnaA chromosomal repl 97.5 0.0017 3.7E-08 77.5 15.4 158 196-375 148-320 (450)
149 PF05673 DUF815: Protein of un 97.5 0.0047 1E-07 64.1 16.3 124 167-316 25-153 (249)
150 PF00004 AAA: ATPase family as 97.4 0.00037 8.1E-09 67.7 7.3 23 199-221 1-23 (132)
151 PRK05707 DNA polymerase III su 97.4 0.0026 5.7E-08 71.4 14.7 97 273-377 105-203 (328)
152 CHL00095 clpC Clp protease ATP 97.4 0.0013 2.8E-08 84.3 13.7 154 170-343 180-353 (821)
153 PRK14086 dnaA chromosomal repl 97.4 0.0028 6.2E-08 75.5 15.3 156 197-374 315-485 (617)
154 COG0593 DnaA ATPase involved i 97.4 0.0031 6.6E-08 71.3 14.7 135 195-348 112-261 (408)
155 KOG0531 Protein phosphatase 1, 97.3 3.2E-05 7E-10 91.4 -1.4 100 577-680 91-191 (414)
156 COG3267 ExeA Type II secretory 97.3 0.011 2.4E-07 61.1 16.5 182 195-380 50-248 (269)
157 TIGR00602 rad24 checkpoint pro 97.3 0.0015 3.2E-08 79.0 12.1 52 168-220 83-134 (637)
158 smart00382 AAA ATPases associa 97.3 0.0014 3E-08 64.8 10.2 88 197-287 3-91 (148)
159 PRK11034 clpA ATP-dependent Cl 97.3 0.0023 4.9E-08 79.8 13.6 155 170-344 187-362 (758)
160 PRK07399 DNA polymerase III su 97.2 0.012 2.6E-07 65.8 17.4 195 170-378 5-222 (314)
161 TIGR03346 chaperone_ClpB ATP-d 97.2 0.0041 8.9E-08 80.0 15.3 155 170-344 174-349 (852)
162 TIGR03689 pup_AAA proteasome A 97.2 0.0061 1.3E-07 71.8 15.3 167 169-345 182-379 (512)
163 KOG4579 Leucine-rich repeat (L 97.2 6.6E-05 1.4E-09 68.4 -0.8 92 577-670 49-141 (177)
164 KOG1909 Ran GTPase-activating 97.1 0.00012 2.5E-09 78.0 0.5 87 576-662 25-131 (382)
165 COG1222 RPT1 ATP-dependent 26S 97.1 0.012 2.6E-07 63.6 15.3 188 170-382 152-372 (406)
166 KOG0531 Protein phosphatase 1, 97.1 8.9E-05 1.9E-09 87.7 -0.7 99 579-681 70-168 (414)
167 COG0542 clpA ATP-binding subun 97.1 0.0079 1.7E-07 73.3 15.3 126 169-301 491-620 (786)
168 PRK08116 hypothetical protein; 97.1 0.0022 4.7E-08 70.1 9.6 103 197-313 115-220 (268)
169 PTZ00454 26S protease regulato 97.1 0.0061 1.3E-07 70.4 13.7 179 169-371 145-351 (398)
170 PF10443 RNA12: RNA12 protein; 97.0 0.037 8.1E-07 62.4 18.7 208 174-396 1-298 (431)
171 PTZ00361 26 proteosome regulat 97.0 0.0064 1.4E-07 70.6 13.3 158 169-345 183-368 (438)
172 PRK10865 protein disaggregatio 97.0 0.0062 1.4E-07 78.0 14.4 154 170-344 179-354 (857)
173 PRK10536 hypothetical protein; 97.0 0.0042 9.1E-08 65.4 10.3 135 170-316 56-215 (262)
174 CHL00176 ftsH cell division pr 97.0 0.01 2.2E-07 72.6 15.1 177 169-369 183-386 (638)
175 PRK08769 DNA polymerase III su 97.0 0.022 4.8E-07 63.3 16.1 186 176-378 11-209 (319)
176 PF05659 RPW8: Arabidopsis bro 97.0 0.0095 2.1E-07 57.4 11.5 86 2-87 1-87 (147)
177 KOG2982 Uncharacterized conser 96.9 0.00042 9.1E-09 71.8 2.3 85 578-662 68-157 (418)
178 PRK08118 topology modulation p 96.9 0.00053 1.1E-08 69.0 3.0 33 198-230 3-37 (167)
179 PRK08058 DNA polymerase III su 96.9 0.018 3.9E-07 65.3 15.5 160 171-342 7-180 (329)
180 KOG1969 DNA replication checkp 96.9 0.031 6.8E-07 66.0 17.2 76 193-287 323-400 (877)
181 TIGR02640 gas_vesic_GvpN gas v 96.9 0.029 6.3E-07 61.4 16.5 54 177-242 10-63 (262)
182 KOG1909 Ran GTPase-activating 96.9 0.00012 2.6E-09 78.0 -2.2 86 1125-1210 154-251 (382)
183 TIGR00763 lon ATP-dependent pr 96.9 0.021 4.6E-07 72.9 17.4 53 169-221 320-372 (775)
184 TIGR01241 FtsH_fam ATP-depende 96.9 0.017 3.7E-07 69.9 15.8 178 169-370 55-259 (495)
185 PRK07261 topology modulation p 96.9 0.0025 5.5E-08 64.5 7.3 65 198-285 2-68 (171)
186 PRK12608 transcription termina 96.9 0.0052 1.1E-07 68.5 10.1 102 177-283 119-229 (380)
187 PTZ00494 tuzin-like protein; P 96.8 0.52 1.1E-05 52.9 24.3 168 166-344 368-544 (664)
188 KOG3665 ZYG-1-like serine/thre 96.8 0.001 2.2E-08 82.0 4.2 109 547-663 145-262 (699)
189 KOG2982 Uncharacterized conser 96.8 0.00045 9.8E-09 71.6 1.0 203 1126-1337 69-285 (418)
190 PF13177 DNA_pol3_delta2: DNA 96.8 0.019 4.2E-07 57.4 12.6 135 173-331 1-161 (162)
191 PRK13531 regulatory ATPase Rav 96.8 0.0087 1.9E-07 69.1 11.1 44 170-221 21-64 (498)
192 KOG1859 Leucine-rich repeat pr 96.7 0.00021 4.5E-09 82.9 -2.5 82 577-662 183-265 (1096)
193 TIGR02639 ClpA ATP-dependent C 96.7 0.021 4.6E-07 72.4 15.0 119 169-299 454-578 (731)
194 PF04665 Pox_A32: Poxvirus A32 96.7 0.003 6.5E-08 66.2 6.0 35 198-233 15-49 (241)
195 PRK10787 DNA-binding ATP-depen 96.7 0.012 2.5E-07 74.2 12.3 166 168-344 321-506 (784)
196 COG1373 Predicted ATPase (AAA+ 96.7 0.032 7E-07 64.8 15.1 119 198-340 39-163 (398)
197 PF02562 PhoH: PhoH-like prote 96.6 0.0037 8E-08 64.1 6.5 132 173-316 4-158 (205)
198 PRK06871 DNA polymerase III su 96.6 0.079 1.7E-06 59.1 17.2 175 177-374 10-200 (325)
199 PRK06526 transposase; Provisio 96.6 0.0026 5.7E-08 68.5 5.4 100 197-314 99-201 (254)
200 PRK06090 DNA polymerase III su 96.6 0.083 1.8E-06 58.8 17.1 175 177-377 11-201 (319)
201 PRK11034 clpA ATP-dependent Cl 96.6 0.061 1.3E-06 67.4 17.7 120 170-299 459-582 (758)
202 PRK10865 protein disaggregatio 96.5 0.021 4.6E-07 73.2 13.9 138 169-313 568-720 (857)
203 KOG2004 Mitochondrial ATP-depe 96.5 0.036 7.8E-07 65.2 14.1 105 168-284 410-515 (906)
204 COG1223 Predicted ATPase (AAA+ 96.5 0.065 1.4E-06 55.0 14.1 177 169-370 121-318 (368)
205 PRK11889 flhF flagellar biosyn 96.5 0.021 4.5E-07 63.9 11.4 89 195-285 240-331 (436)
206 smart00763 AAA_PrkA PrkA AAA d 96.5 0.0032 6.9E-08 69.9 4.9 52 170-221 52-103 (361)
207 TIGR03345 VI_ClpV1 type VI sec 96.5 0.012 2.6E-07 75.1 10.8 137 169-313 566-718 (852)
208 TIGR03346 chaperone_ClpB ATP-d 96.4 0.016 3.4E-07 74.7 12.0 136 169-313 565-717 (852)
209 PRK04296 thymidine kinase; Pro 96.4 0.005 1.1E-07 63.6 5.9 113 197-315 3-117 (190)
210 PRK08939 primosomal protein Dn 96.4 0.011 2.4E-07 65.7 8.9 122 173-313 135-260 (306)
211 COG0466 Lon ATP-dependent Lon 96.4 0.027 5.8E-07 66.7 12.2 165 168-344 322-508 (782)
212 COG2607 Predicted ATPase (AAA+ 96.4 0.056 1.2E-06 55.1 12.7 120 169-314 60-183 (287)
213 PRK09183 transposase/IS protei 96.4 0.0045 9.8E-08 67.3 5.7 100 197-313 103-205 (259)
214 KOG1514 Origin recognition com 96.4 0.14 3.1E-06 60.6 17.8 200 170-379 397-623 (767)
215 KOG1947 Leucine rich repeat pr 96.4 0.00038 8.3E-09 85.4 -3.0 231 1103-1335 187-442 (482)
216 KOG1947 Leucine rich repeat pr 96.4 0.00027 5.8E-09 86.8 -4.6 35 1247-1281 403-440 (482)
217 KOG2228 Origin recognition com 96.4 0.033 7.2E-07 59.6 11.4 171 170-344 25-219 (408)
218 KOG1644 U2-associated snRNP A' 96.4 0.005 1.1E-07 60.8 5.0 98 581-681 42-146 (233)
219 KOG0741 AAA+-type ATPase [Post 96.4 0.097 2.1E-06 59.4 15.5 150 193-367 535-704 (744)
220 KOG0733 Nuclear AAA ATPase (VC 96.3 0.084 1.8E-06 61.1 15.0 193 169-382 190-411 (802)
221 PRK04132 replication factor C 96.3 0.084 1.8E-06 66.2 16.6 156 204-378 574-732 (846)
222 PRK07993 DNA polymerase III su 96.3 0.12 2.5E-06 58.5 16.4 176 177-375 10-202 (334)
223 KOG1859 Leucine-rich repeat pr 96.2 0.00019 4.2E-09 83.1 -6.0 99 580-683 163-262 (1096)
224 PF07693 KAP_NTPase: KAP famil 96.2 0.15 3.1E-06 58.6 17.4 46 175-223 2-47 (325)
225 PRK06921 hypothetical protein; 96.2 0.016 3.4E-07 63.3 8.6 38 196-233 117-154 (266)
226 KOG0991 Replication factor C, 96.2 0.097 2.1E-06 52.9 13.0 64 169-238 27-91 (333)
227 KOG0730 AAA+-type ATPase [Post 96.2 0.06 1.3E-06 63.2 13.4 169 170-359 435-629 (693)
228 CHL00095 clpC Clp protease ATP 96.2 0.023 5E-07 73.1 11.3 136 169-313 509-661 (821)
229 cd01123 Rad51_DMC1_radA Rad51_ 96.2 0.014 3.1E-07 63.2 8.2 56 194-250 17-77 (235)
230 PRK08181 transposase; Validate 96.2 0.0098 2.1E-07 64.4 6.7 100 197-313 107-208 (269)
231 PRK06964 DNA polymerase III su 96.2 0.11 2.3E-06 58.6 15.0 94 273-378 131-226 (342)
232 PRK08699 DNA polymerase III su 96.2 0.039 8.4E-07 62.0 11.6 71 273-343 112-184 (325)
233 TIGR02237 recomb_radB DNA repa 96.1 0.015 3.2E-07 61.6 7.8 48 194-243 10-57 (209)
234 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.1 0.053 1.2E-06 53.1 11.0 106 196-319 26-132 (144)
235 cd03238 ABC_UvrA The excision 96.1 0.045 9.8E-07 55.4 10.7 121 196-328 21-161 (176)
236 CHL00195 ycf46 Ycf46; Provisio 96.1 0.08 1.7E-06 62.7 14.3 158 170-346 229-407 (489)
237 cd00561 CobA_CobO_BtuR ATP:cor 96.1 0.018 3.8E-07 56.4 7.2 117 197-315 3-139 (159)
238 PF08423 Rad51: Rad51; InterP 96.1 0.016 3.4E-07 62.9 7.7 88 195-283 37-142 (256)
239 PRK09361 radB DNA repair and r 96.1 0.014 3.1E-07 62.6 7.4 47 194-242 21-67 (225)
240 TIGR01243 CDC48 AAA family ATP 96.0 0.1 2.2E-06 66.7 15.9 178 169-371 453-657 (733)
241 cd03247 ABCC_cytochrome_bd The 96.0 0.065 1.4E-06 55.0 11.7 118 196-318 28-161 (178)
242 COG0470 HolB ATPase involved i 96.0 0.038 8.2E-07 63.5 11.1 142 171-332 3-169 (325)
243 KOG0735 AAA+-type ATPase [Post 96.0 0.061 1.3E-06 63.3 12.2 162 195-377 430-616 (952)
244 PF01695 IstB_IS21: IstB-like 96.0 0.0066 1.4E-07 61.7 4.1 100 196-313 47-149 (178)
245 KOG0734 AAA+-type ATPase conta 96.0 0.13 2.8E-06 58.5 14.2 54 170-223 305-364 (752)
246 TIGR02012 tigrfam_recA protein 96.0 0.017 3.8E-07 63.8 7.4 86 193-284 52-143 (321)
247 cd00983 recA RecA is a bacter 95.9 0.017 3.7E-07 63.9 7.4 84 194-283 53-142 (325)
248 PF00560 LRR_1: Leucine Rich R 95.9 0.0034 7.4E-08 38.3 1.1 19 606-624 2-20 (22)
249 PF00448 SRP54: SRP54-type pro 95.9 0.023 5E-07 58.7 7.9 88 196-284 1-93 (196)
250 TIGR02238 recomb_DMC1 meiotic 95.9 0.027 5.8E-07 62.8 8.9 59 194-253 94-157 (313)
251 cd01394 radB RadB. The archaea 95.9 0.022 4.7E-07 60.8 7.7 44 194-238 17-60 (218)
252 COG5238 RNA1 Ran GTPase-activa 95.9 0.0051 1.1E-07 63.2 2.6 85 578-662 27-131 (388)
253 PRK00771 signal recognition pa 95.9 0.056 1.2E-06 63.0 11.4 90 194-285 93-186 (437)
254 PRK05541 adenylylsulfate kinas 95.8 0.028 6E-07 57.6 8.1 36 195-231 6-41 (176)
255 KOG2035 Replication factor C, 95.8 0.077 1.7E-06 55.2 10.8 217 171-397 15-258 (351)
256 cd03222 ABC_RNaseL_inhibitor T 95.8 0.064 1.4E-06 54.3 10.4 104 197-320 26-138 (177)
257 PRK09354 recA recombinase A; P 95.8 0.023 5E-07 63.4 7.7 85 194-284 58-148 (349)
258 PF13207 AAA_17: AAA domain; P 95.8 0.0063 1.4E-07 57.9 2.9 23 198-220 1-23 (121)
259 KOG0744 AAA+-type ATPase [Post 95.8 0.091 2E-06 55.9 11.4 79 196-284 177-260 (423)
260 COG2812 DnaX DNA polymerase II 95.8 0.054 1.2E-06 63.5 10.9 189 169-372 16-215 (515)
261 PRK12377 putative replication 95.8 0.027 5.8E-07 60.3 7.9 101 197-313 102-205 (248)
262 cd03228 ABCC_MRP_Like The MRP 95.8 0.073 1.6E-06 54.1 10.8 118 196-319 28-160 (171)
263 cd01133 F1-ATPase_beta F1 ATP 95.8 0.054 1.2E-06 58.3 9.9 89 195-283 68-172 (274)
264 PHA00729 NTP-binding motif con 95.8 0.022 4.8E-07 59.1 6.7 26 195-220 16-41 (226)
265 cd01393 recA_like RecA is a b 95.8 0.039 8.6E-07 59.3 9.2 89 194-283 17-123 (226)
266 PF07728 AAA_5: AAA domain (dy 95.7 0.0039 8.4E-08 61.1 1.2 84 199-295 2-86 (139)
267 cd03214 ABC_Iron-Siderophores_ 95.7 0.079 1.7E-06 54.4 10.8 121 196-319 25-163 (180)
268 TIGR02902 spore_lonB ATP-depen 95.7 0.05 1.1E-06 66.0 10.6 44 170-219 66-109 (531)
269 COG1121 ZnuC ABC-type Mn/Zn tr 95.7 0.096 2.1E-06 55.3 11.2 121 197-319 31-204 (254)
270 PRK14722 flhF flagellar biosyn 95.7 0.028 6.1E-07 63.6 7.8 88 196-285 137-226 (374)
271 cd03223 ABCD_peroxisomal_ALDP 95.7 0.11 2.5E-06 52.3 11.5 116 196-317 27-151 (166)
272 TIGR01243 CDC48 AAA family ATP 95.7 0.13 2.9E-06 65.6 14.8 179 170-372 179-382 (733)
273 KOG3665 ZYG-1-like serine/thre 95.6 0.0054 1.2E-07 75.7 2.2 85 576-662 143-231 (699)
274 PRK07952 DNA replication prote 95.6 0.061 1.3E-06 57.4 9.8 103 196-313 99-204 (244)
275 PRK05703 flhF flagellar biosyn 95.6 0.11 2.5E-06 60.7 12.9 88 196-285 221-310 (424)
276 KOG0728 26S proteasome regulat 95.6 0.34 7.3E-06 49.4 14.2 190 170-380 147-366 (404)
277 PRK14974 cell division protein 95.6 0.062 1.3E-06 60.3 10.0 90 195-286 139-234 (336)
278 COG1102 Cmk Cytidylate kinase 95.6 0.025 5.5E-07 53.8 5.8 44 198-253 2-45 (179)
279 PF14532 Sigma54_activ_2: Sigm 95.6 0.012 2.5E-07 57.4 3.8 106 172-313 1-109 (138)
280 PLN03187 meiotic recombination 95.6 0.049 1.1E-06 61.2 9.2 59 194-253 124-187 (344)
281 cd01120 RecA-like_NTPases RecA 95.6 0.033 7.2E-07 56.3 7.4 40 198-238 1-40 (165)
282 TIGR03499 FlhF flagellar biosy 95.6 0.035 7.6E-07 61.4 8.0 87 195-283 193-281 (282)
283 PRK06696 uridine kinase; Valid 95.6 0.016 3.6E-07 61.8 5.2 44 174-220 3-46 (223)
284 COG2884 FtsE Predicted ATPase 95.6 0.17 3.7E-06 49.9 11.4 125 196-322 28-205 (223)
285 PF13604 AAA_30: AAA domain; P 95.5 0.031 6.8E-07 58.0 7.0 108 197-315 19-132 (196)
286 COG0468 RecA RecA/RadA recombi 95.5 0.047 1E-06 59.0 8.4 90 192-283 56-150 (279)
287 PF00560 LRR_1: Leucine Rich R 95.5 0.0075 1.6E-07 36.8 1.3 22 582-603 1-22 (22)
288 PRK13695 putative NTPase; Prov 95.5 0.018 4E-07 58.8 5.1 24 198-221 2-25 (174)
289 PRK05800 cobU adenosylcobinami 95.5 0.14 3.1E-06 51.5 11.3 80 198-283 3-85 (170)
290 COG0542 clpA ATP-binding subun 95.5 0.054 1.2E-06 66.3 9.6 153 170-344 171-346 (786)
291 COG1618 Predicted nucleotide k 95.5 0.01 2.2E-07 56.4 2.8 30 197-226 6-35 (179)
292 PF03215 Rad17: Rad17 cell cyc 95.5 0.13 2.8E-06 61.4 12.7 60 170-233 20-79 (519)
293 KOG0733 Nuclear AAA ATPase (VC 95.5 0.25 5.3E-06 57.5 14.0 156 195-371 544-718 (802)
294 PRK04301 radA DNA repair and r 95.4 0.05 1.1E-06 61.6 8.9 57 194-251 100-161 (317)
295 cd03115 SRP The signal recogni 95.4 0.071 1.5E-06 54.4 9.1 24 198-221 2-25 (173)
296 PRK12723 flagellar biosynthesi 95.4 0.099 2.1E-06 59.9 10.8 88 195-285 173-265 (388)
297 TIGR01650 PD_CobS cobaltochela 95.3 0.48 1E-05 52.4 15.5 63 168-242 44-106 (327)
298 PRK12727 flagellar biosynthesi 95.3 0.063 1.4E-06 62.8 9.1 88 195-284 349-438 (559)
299 COG1875 NYN ribonuclease and A 95.3 0.036 7.9E-07 60.0 6.6 134 171-315 226-389 (436)
300 cd03216 ABC_Carb_Monos_I This 95.3 0.066 1.4E-06 53.9 8.3 117 197-319 27-147 (163)
301 cd02027 APSK Adenosine 5'-phos 95.3 0.094 2E-06 51.7 9.1 23 198-220 1-23 (149)
302 COG1484 DnaC DNA replication p 95.2 0.047 1E-06 59.1 7.4 81 196-292 105-185 (254)
303 PRK12726 flagellar biosynthesi 95.2 0.12 2.6E-06 57.8 10.5 90 195-285 205-296 (407)
304 KOG1644 U2-associated snRNP A' 95.2 0.024 5.1E-07 56.2 4.4 86 576-662 59-151 (233)
305 PRK15455 PrkA family serine pr 95.2 0.016 3.4E-07 67.8 3.8 51 170-220 77-127 (644)
306 PF00485 PRK: Phosphoribulokin 95.2 0.089 1.9E-06 54.8 9.2 80 198-278 1-87 (194)
307 KOG0731 AAA+-type ATPase conta 95.2 0.45 9.7E-06 58.1 15.9 181 169-373 311-520 (774)
308 PRK00625 shikimate kinase; Pro 95.2 0.082 1.8E-06 53.4 8.4 24 198-221 2-25 (173)
309 PF00158 Sigma54_activat: Sigm 95.2 0.077 1.7E-06 53.3 8.2 131 171-313 1-143 (168)
310 PRK08233 hypothetical protein; 95.1 0.059 1.3E-06 55.7 7.6 26 196-221 3-28 (182)
311 COG1126 GlnQ ABC-type polar am 95.1 0.35 7.6E-06 49.0 12.3 124 196-321 28-203 (240)
312 PRK00889 adenylylsulfate kinas 95.1 0.095 2.1E-06 53.6 8.8 27 195-221 3-29 (175)
313 PRK12724 flagellar biosynthesi 95.1 0.073 1.6E-06 60.7 8.4 26 195-220 222-247 (432)
314 TIGR02239 recomb_RAD51 DNA rep 95.0 0.06 1.3E-06 60.3 7.8 58 194-252 94-156 (316)
315 cd01125 repA Hexameric Replica 95.0 0.19 4.2E-06 54.4 11.5 141 198-338 3-198 (239)
316 PRK06067 flagellar accessory p 95.0 0.084 1.8E-06 57.0 8.7 87 194-284 23-130 (234)
317 cd03246 ABCC_Protease_Secretio 95.0 0.12 2.7E-06 52.6 9.5 117 196-318 28-160 (173)
318 COG4608 AppF ABC-type oligopep 95.0 0.14 2.9E-06 54.3 9.6 125 196-322 39-178 (268)
319 COG0396 sufC Cysteine desulfur 95.0 0.3 6.4E-06 50.0 11.5 64 263-326 151-216 (251)
320 cd01122 GP4d_helicase GP4d_hel 95.0 0.16 3.5E-06 56.4 11.1 52 196-249 30-81 (271)
321 COG0563 Adk Adenylate kinase a 95.0 0.035 7.7E-07 56.1 5.2 25 198-222 2-26 (178)
322 cd00544 CobU Adenosylcobinamid 94.9 0.47 1E-05 47.6 13.1 78 199-283 2-82 (169)
323 PLN03186 DNA repair protein RA 94.9 0.13 2.8E-06 58.0 10.0 59 194-253 121-184 (342)
324 TIGR02858 spore_III_AA stage I 94.9 0.21 4.6E-06 54.3 11.3 127 178-318 98-233 (270)
325 PHA02244 ATPase-like protein 94.9 0.16 3.4E-06 56.8 10.4 23 198-220 121-143 (383)
326 PRK10867 signal recognition pa 94.9 0.08 1.7E-06 61.5 8.3 89 195-284 99-193 (433)
327 cd03217 ABC_FeS_Assembly ABC-t 94.8 0.18 3.9E-06 52.8 10.1 120 196-319 26-169 (200)
328 PRK13539 cytochrome c biogenes 94.7 0.22 4.9E-06 52.4 10.9 65 266-333 137-203 (207)
329 TIGR02236 recomb_radA DNA repa 94.7 0.12 2.5E-06 58.6 9.2 57 194-251 93-154 (310)
330 cd03230 ABC_DR_subfamily_A Thi 94.7 0.19 4.2E-06 51.1 10.0 119 196-319 26-160 (173)
331 KOG2739 Leucine-rich acidic nu 94.7 0.019 4.1E-07 59.6 2.4 36 602-637 63-101 (260)
332 TIGR00959 ffh signal recogniti 94.7 0.14 3.1E-06 59.4 9.9 90 195-285 98-193 (428)
333 PRK10733 hflB ATP-dependent me 94.7 0.23 5E-06 61.9 12.4 157 170-345 153-336 (644)
334 COG1136 SalX ABC-type antimicr 94.7 0.33 7.2E-06 50.5 11.4 59 262-320 148-209 (226)
335 KOG2739 Leucine-rich acidic nu 94.7 0.022 4.8E-07 59.1 2.9 85 577-662 61-154 (260)
336 KOG0739 AAA+-type ATPase [Post 94.7 7.2 0.00016 41.5 22.1 96 170-285 134-236 (439)
337 PLN00020 ribulose bisphosphate 94.6 0.083 1.8E-06 58.4 7.2 29 194-222 146-174 (413)
338 PTZ00088 adenylate kinase 1; P 94.6 0.035 7.5E-07 58.8 4.3 24 198-221 8-31 (229)
339 TIGR01359 UMP_CMP_kin_fam UMP- 94.6 0.049 1.1E-06 56.3 5.3 23 198-220 1-23 (183)
340 TIGR00708 cobA cob(I)alamin ad 94.6 0.13 2.9E-06 51.1 7.9 118 197-314 6-140 (173)
341 PRK06217 hypothetical protein; 94.6 0.096 2.1E-06 53.9 7.4 34 198-231 3-38 (183)
342 TIGR00390 hslU ATP-dependent p 94.6 0.089 1.9E-06 59.7 7.4 82 168-249 11-103 (441)
343 PTZ00035 Rad51 protein; Provis 94.5 0.24 5.2E-06 56.1 11.0 58 194-252 116-178 (337)
344 KOG2123 Uncharacterized conser 94.5 0.0026 5.6E-08 65.6 -4.3 42 577-619 37-78 (388)
345 PRK05201 hslU ATP-dependent pr 94.4 0.086 1.9E-06 59.8 6.9 83 168-250 14-107 (443)
346 cd01131 PilT Pilus retraction 94.4 0.074 1.6E-06 55.4 6.2 111 197-317 2-112 (198)
347 PRK05439 pantothenate kinase; 94.4 0.19 4.2E-06 55.5 9.6 81 193-275 83-166 (311)
348 PRK13543 cytochrome c biogenes 94.3 0.41 8.9E-06 50.8 11.8 25 196-220 37-61 (214)
349 TIGR02974 phageshock_pspF psp 94.3 0.24 5.1E-06 56.1 10.4 60 171-235 1-60 (329)
350 TIGR00554 panK_bact pantothena 94.3 0.17 3.7E-06 55.5 8.9 25 194-218 60-84 (290)
351 COG1428 Deoxynucleoside kinase 94.3 0.03 6.5E-07 56.4 2.8 27 197-223 5-31 (216)
352 PF12775 AAA_7: P-loop contain 94.3 0.048 1E-06 59.6 4.7 91 178-286 22-112 (272)
353 PRK07667 uridine kinase; Provi 94.3 0.057 1.2E-06 56.1 5.0 39 178-220 3-41 (193)
354 PRK08533 flagellar accessory p 94.3 0.21 4.6E-06 53.4 9.4 49 195-246 23-71 (230)
355 PRK09270 nucleoside triphospha 94.3 0.19 4.2E-06 53.8 9.2 29 193-221 30-58 (229)
356 cd03281 ABC_MSH5_euk MutS5 hom 94.3 0.064 1.4E-06 56.5 5.3 121 196-320 29-160 (213)
357 COG2842 Uncharacterized ATPase 94.3 0.85 1.8E-05 48.9 13.4 95 197-298 95-189 (297)
358 TIGR01817 nifA Nif-specific re 94.3 0.48 1E-05 58.2 13.8 133 168-313 195-340 (534)
359 KOG3347 Predicted nucleotide k 94.3 0.074 1.6E-06 49.8 4.9 68 197-273 8-75 (176)
360 PF00154 RecA: recA bacterial 94.3 0.095 2.1E-06 57.9 6.8 85 193-283 50-140 (322)
361 cd03229 ABC_Class3 This class 94.2 0.19 4.1E-06 51.5 8.7 122 196-319 26-166 (178)
362 cd03250 ABCC_MRP_domain1 Domai 94.2 0.64 1.4E-05 48.9 12.9 25 196-220 31-55 (204)
363 COG0572 Udk Uridine kinase [Nu 94.2 0.1 2.3E-06 53.5 6.5 78 194-275 6-85 (218)
364 cd03235 ABC_Metallic_Cations A 94.2 0.32 6.9E-06 51.6 10.7 25 196-220 25-49 (213)
365 COG1066 Sms Predicted ATP-depe 94.2 0.19 4.2E-06 55.8 8.8 82 195-284 92-178 (456)
366 cd02025 PanK Pantothenate kina 94.2 0.13 2.9E-06 54.4 7.6 24 198-221 1-24 (220)
367 KOG1051 Chaperone HSP104 and r 94.2 0.41 8.8E-06 59.8 12.6 119 170-298 563-684 (898)
368 TIGR01425 SRP54_euk signal rec 94.2 0.21 4.5E-06 57.7 9.5 39 194-233 98-136 (429)
369 TIGR03877 thermo_KaiC_1 KaiC d 94.2 0.2 4.3E-06 54.1 9.0 49 194-245 19-67 (237)
370 PRK13948 shikimate kinase; Pro 94.1 0.33 7.3E-06 49.4 10.0 27 195-221 9-35 (182)
371 TIGR03771 anch_rpt_ABC anchore 94.1 0.41 9E-06 51.1 11.4 25 196-220 6-30 (223)
372 TIGR00064 ftsY signal recognit 94.1 0.18 4E-06 55.1 8.6 89 195-285 71-165 (272)
373 COG0464 SpoVK ATPases of the A 94.1 0.95 2.1E-05 55.1 15.7 132 194-345 274-424 (494)
374 cd03369 ABCC_NFT1 Domain 2 of 94.0 0.75 1.6E-05 48.5 13.0 24 196-219 34-57 (207)
375 PRK03846 adenylylsulfate kinas 94.0 0.1 2.3E-06 54.4 6.3 27 194-220 22-48 (198)
376 COG5238 RNA1 Ran GTPase-activa 94.0 0.012 2.7E-07 60.5 -0.6 224 600-851 26-283 (388)
377 PF13238 AAA_18: AAA domain; P 94.0 0.037 8E-07 53.3 2.7 22 199-220 1-22 (129)
378 cd03215 ABC_Carb_Monos_II This 94.0 0.57 1.2E-05 48.2 11.6 25 196-220 26-50 (182)
379 PF00006 ATP-synt_ab: ATP synt 93.9 0.2 4.4E-06 52.3 8.2 85 196-283 15-114 (215)
380 PRK15429 formate hydrogenlyase 93.9 0.24 5.3E-06 62.7 10.6 134 169-313 376-520 (686)
381 PRK11608 pspF phage shock prot 93.9 0.2 4.4E-06 56.8 8.9 133 170-313 7-150 (326)
382 PLN02924 thymidylate kinase 93.9 0.17 3.6E-06 53.5 7.6 55 194-248 14-68 (220)
383 cd02019 NK Nucleoside/nucleoti 93.9 0.042 9E-07 45.7 2.4 23 198-220 1-23 (69)
384 KOG4252 GTP-binding protein [S 93.9 0.32 6.9E-06 46.7 8.4 38 197-234 21-58 (246)
385 PF01583 APS_kinase: Adenylyls 93.8 0.034 7.4E-07 54.2 2.1 36 196-232 2-37 (156)
386 PRK08972 fliI flagellum-specif 93.8 0.3 6.5E-06 56.3 9.8 86 195-283 161-261 (444)
387 TIGR03878 thermo_KaiC_2 KaiC d 93.8 0.17 3.7E-06 55.2 7.8 42 194-236 34-75 (259)
388 PF06309 Torsin: Torsin; Inte 93.8 0.12 2.6E-06 47.9 5.4 50 170-219 26-76 (127)
389 PRK14723 flhF flagellar biosyn 93.8 0.35 7.5E-06 59.8 10.9 86 196-284 185-273 (767)
390 PRK06002 fliI flagellum-specif 93.8 0.26 5.7E-06 57.0 9.4 86 196-283 165-263 (450)
391 cd00267 ABC_ATPase ABC (ATP-bi 93.7 0.22 4.8E-06 49.8 7.9 119 197-320 26-146 (157)
392 COG1419 FlhF Flagellar GTP-bin 93.7 0.2 4.4E-06 56.2 8.1 88 196-285 203-292 (407)
393 cd03283 ABC_MutS-like MutS-lik 93.7 0.068 1.5E-06 55.6 4.2 22 197-218 26-47 (199)
394 cd03269 ABC_putative_ATPase Th 93.7 0.53 1.1E-05 49.8 11.2 25 196-220 26-50 (210)
395 PRK13538 cytochrome c biogenes 93.7 0.51 1.1E-05 49.7 10.9 25 196-220 27-51 (204)
396 TIGR01360 aden_kin_iso1 adenyl 93.7 0.058 1.3E-06 56.0 3.8 25 196-220 3-27 (188)
397 cd03226 ABC_cobalt_CbiO_domain 93.7 0.64 1.4E-05 49.0 11.7 24 197-220 27-50 (205)
398 PRK06835 DNA replication prote 93.7 0.18 3.8E-06 56.7 7.7 102 197-313 184-288 (329)
399 PF10236 DAP3: Mitochondrial r 93.7 0.8 1.7E-05 51.3 13.0 49 325-374 258-306 (309)
400 PRK09544 znuC high-affinity zi 93.7 0.42 9E-06 52.0 10.5 25 196-220 30-54 (251)
401 PRK09280 F0F1 ATP synthase sub 93.7 0.28 6.2E-06 57.0 9.4 89 195-283 143-247 (463)
402 KOG0473 Leucine-rich repeat pr 93.7 0.0026 5.7E-08 63.7 -5.9 86 577-663 38-123 (326)
403 cd03244 ABCC_MRP_domain2 Domai 93.7 0.74 1.6E-05 49.2 12.3 24 196-219 30-53 (221)
404 CHL00206 ycf2 Ycf2; Provisiona 93.7 0.5 1.1E-05 63.1 12.4 29 194-222 1628-1656(2281)
405 cd03237 ABC_RNaseL_inhibitor_d 93.6 0.52 1.1E-05 51.0 11.0 125 196-320 25-182 (246)
406 TIGR03522 GldA_ABC_ATP gliding 93.6 0.64 1.4E-05 52.2 12.2 25 196-220 28-52 (301)
407 PF03969 AFG1_ATPase: AFG1-lik 93.6 0.23 5E-06 56.6 8.6 108 194-317 60-170 (362)
408 PF07724 AAA_2: AAA domain (Cd 93.6 0.04 8.8E-07 55.5 2.2 42 196-237 3-44 (171)
409 PRK06547 hypothetical protein; 93.6 0.092 2E-06 53.0 4.8 28 194-221 13-40 (172)
410 cd01121 Sms Sms (bacterial rad 93.6 0.23 5E-06 56.9 8.5 82 195-283 81-167 (372)
411 TIGR02324 CP_lyasePhnL phospho 93.6 0.76 1.6E-05 49.2 12.2 25 196-220 34-58 (224)
412 cd03263 ABC_subfamily_A The AB 93.6 0.53 1.2E-05 50.2 11.0 25 196-220 28-52 (220)
413 KOG1532 GTPase XAB1, interacts 93.6 0.051 1.1E-06 56.2 2.9 32 192-223 15-46 (366)
414 PRK06731 flhF flagellar biosyn 93.6 0.34 7.3E-06 52.7 9.3 90 196-286 75-166 (270)
415 PRK05986 cob(I)alamin adenolsy 93.6 0.18 3.9E-06 50.9 6.7 119 196-315 22-159 (191)
416 PF13504 LRR_7: Leucine rich r 93.6 0.047 1E-06 30.8 1.5 16 605-620 2-17 (17)
417 TIGR00235 udk uridine kinase. 93.6 0.059 1.3E-06 56.8 3.5 27 194-220 4-30 (207)
418 PRK04328 hypothetical protein; 93.5 0.24 5.2E-06 53.7 8.2 43 194-237 21-63 (249)
419 PRK05480 uridine/cytidine kina 93.5 0.063 1.4E-06 56.8 3.6 27 194-220 4-30 (209)
420 PRK09580 sufC cysteine desulfu 93.5 0.64 1.4E-05 50.7 11.7 24 196-219 27-50 (248)
421 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 93.4 0.63 1.4E-05 49.7 11.2 25 196-220 48-72 (224)
422 TIGR01069 mutS2 MutS2 family p 93.4 0.24 5.2E-06 62.6 9.1 24 196-219 322-345 (771)
423 cd03232 ABC_PDR_domain2 The pl 93.4 0.52 1.1E-05 49.0 10.2 24 196-219 33-56 (192)
424 COG4088 Predicted nucleotide k 93.4 0.12 2.5E-06 51.4 4.8 25 197-221 2-26 (261)
425 TIGR00455 apsK adenylylsulfate 93.4 0.31 6.7E-06 50.3 8.5 26 195-220 17-42 (184)
426 cd03259 ABC_Carb_Solutes_like 93.4 0.65 1.4E-05 49.3 11.2 24 196-219 26-49 (213)
427 TIGR03864 PQQ_ABC_ATP ABC tran 93.4 0.61 1.3E-05 50.4 11.2 25 196-220 27-51 (236)
428 PF13671 AAA_33: AAA domain; P 93.4 0.061 1.3E-06 52.9 3.1 22 198-219 1-22 (143)
429 PRK14721 flhF flagellar biosyn 93.4 0.29 6.4E-06 56.5 8.9 87 195-283 190-278 (420)
430 cd01135 V_A-ATPase_B V/A-type 93.4 0.32 6.9E-06 52.3 8.5 88 196-283 69-175 (276)
431 PRK12597 F0F1 ATP synthase sub 93.4 0.21 4.5E-06 58.3 7.7 89 195-283 142-246 (461)
432 PRK07132 DNA polymerase III su 93.3 2.8 6E-05 46.5 16.1 155 196-376 18-184 (299)
433 COG5635 Predicted NTPase (NACH 93.3 0.13 2.9E-06 66.2 6.9 182 196-382 222-427 (824)
434 PRK11248 tauB taurine transpor 93.3 0.84 1.8E-05 49.9 12.2 25 196-220 27-51 (255)
435 PF08298 AAA_PrkA: PrkA AAA do 93.3 0.11 2.3E-06 57.4 5.0 52 169-220 61-112 (358)
436 PTZ00185 ATPase alpha subunit; 93.3 0.45 9.8E-06 55.2 10.1 90 195-284 188-299 (574)
437 PRK00279 adk adenylate kinase; 93.2 0.14 3.1E-06 54.3 5.9 24 198-221 2-25 (215)
438 KOG2170 ATPase of the AAA+ sup 93.2 0.14 3.1E-06 54.2 5.5 53 169-221 82-135 (344)
439 cd03282 ABC_MSH4_euk MutS4 hom 93.2 0.11 2.4E-06 54.2 4.8 121 196-322 29-159 (204)
440 PRK06762 hypothetical protein; 93.2 0.064 1.4E-06 54.3 3.0 25 196-220 2-26 (166)
441 PRK10463 hydrogenase nickel in 93.2 0.22 4.7E-06 54.1 7.1 28 194-221 102-129 (290)
442 cd03249 ABC_MTABC3_MDL1_MDL2 M 93.2 0.82 1.8E-05 49.5 11.9 25 196-220 29-53 (238)
443 cd03254 ABCC_Glucan_exporter_l 93.2 0.98 2.1E-05 48.6 12.3 24 197-220 30-53 (229)
444 cd01132 F1_ATPase_alpha F1 ATP 93.2 0.28 6.1E-06 52.7 7.8 86 195-283 68-170 (274)
445 PRK10416 signal recognition pa 93.2 0.35 7.5E-06 54.2 8.9 27 195-221 113-139 (318)
446 KOG2123 Uncharacterized conser 93.1 0.013 2.8E-07 60.6 -2.1 104 579-685 17-127 (388)
447 PRK09519 recA DNA recombinatio 93.1 0.22 4.8E-06 61.7 7.8 84 194-283 58-147 (790)
448 PRK06995 flhF flagellar biosyn 93.1 0.4 8.7E-06 56.4 9.6 87 196-284 256-344 (484)
449 smart00534 MUTSac ATPase domai 93.1 0.075 1.6E-06 54.8 3.3 118 198-320 1-128 (185)
450 PF03308 ArgK: ArgK protein; 93.1 0.11 2.3E-06 54.6 4.3 62 177-242 14-76 (266)
451 cd02021 GntK Gluconate kinase 93.0 0.66 1.4E-05 46.0 9.9 23 198-220 1-23 (150)
452 PRK05022 anaerobic nitric oxid 93.0 0.53 1.2E-05 57.2 11.0 133 168-313 186-331 (509)
453 PRK08927 fliI flagellum-specif 93.0 0.39 8.5E-06 55.6 9.2 86 195-283 157-257 (442)
454 cd03233 ABC_PDR_domain1 The pl 93.0 0.92 2E-05 47.5 11.4 25 196-220 33-57 (202)
455 PRK13647 cbiO cobalt transport 93.0 0.81 1.8E-05 50.6 11.6 24 196-219 31-54 (274)
456 PRK14527 adenylate kinase; Pro 93.0 0.14 3.1E-06 53.2 5.3 28 195-222 5-32 (191)
457 COG3640 CooC CO dehydrogenase 93.0 0.099 2.1E-06 53.4 3.8 40 198-238 2-42 (255)
458 TIGR03305 alt_F1F0_F1_bet alte 93.0 0.36 7.9E-06 55.9 8.9 89 195-283 137-241 (449)
459 cd03264 ABC_drug_resistance_li 93.0 0.36 7.8E-06 51.1 8.4 22 198-219 27-48 (211)
460 PRK12678 transcription termina 93.0 0.14 3E-06 59.9 5.4 99 180-283 405-512 (672)
461 PTZ00301 uridine kinase; Provi 92.9 0.083 1.8E-06 55.2 3.3 25 196-220 3-27 (210)
462 cd03245 ABCC_bacteriocin_expor 92.9 0.88 1.9E-05 48.6 11.4 25 196-220 30-54 (220)
463 PRK15056 manganese/iron transp 92.9 0.83 1.8E-05 50.6 11.4 25 196-220 33-57 (272)
464 TIGR03574 selen_PSTK L-seryl-t 92.9 0.16 3.4E-06 55.5 5.6 23 199-221 2-24 (249)
465 PRK03839 putative kinase; Prov 92.9 0.07 1.5E-06 54.9 2.7 24 198-221 2-25 (180)
466 PRK05973 replicative DNA helic 92.8 0.42 9E-06 50.7 8.4 49 195-246 63-111 (237)
467 TIGR03740 galliderm_ABC gallid 92.8 0.89 1.9E-05 48.6 11.3 25 196-220 26-50 (223)
468 COG0488 Uup ATPase components 92.8 0.81 1.7E-05 54.9 11.8 132 196-330 348-511 (530)
469 cd03301 ABC_MalK_N The N-termi 92.8 0.84 1.8E-05 48.4 11.0 25 196-220 26-50 (213)
470 KOG0736 Peroxisome assembly fa 92.8 1.6 3.4E-05 52.7 13.6 97 170-285 673-775 (953)
471 TIGR03881 KaiC_arch_4 KaiC dom 92.8 0.34 7.4E-06 52.1 8.0 42 194-236 18-59 (229)
472 PRK09099 type III secretion sy 92.8 0.54 1.2E-05 54.7 9.9 87 195-283 162-262 (441)
473 TIGR00150 HI0065_YjeE ATPase, 92.7 0.17 3.7E-06 48.0 4.8 42 176-221 6-47 (133)
474 PRK14250 phosphate ABC transpo 92.7 0.95 2.1E-05 49.1 11.5 24 197-220 30-53 (241)
475 PRK08149 ATP synthase SpaL; Va 92.7 0.41 8.8E-06 55.4 8.8 85 196-283 151-250 (428)
476 COG0714 MoxR-like ATPases [Gen 92.7 0.23 5E-06 56.7 6.9 65 169-245 24-88 (329)
477 cd03267 ABC_NatA_like Similar 92.7 0.96 2.1E-05 48.8 11.4 24 196-219 47-70 (236)
478 PRK11247 ssuB aliphatic sulfon 92.7 0.96 2.1E-05 49.4 11.4 25 196-220 38-62 (257)
479 cd03253 ABCC_ATM1_transporter 92.6 1.1 2.4E-05 48.5 11.8 25 196-220 27-51 (236)
480 cd03213 ABCG_EPDR ABCG transpo 92.6 0.78 1.7E-05 47.7 10.1 25 196-220 35-59 (194)
481 PRK04040 adenylate kinase; Pro 92.6 0.093 2E-06 53.9 3.1 24 197-220 3-26 (188)
482 KOG0743 AAA+-type ATPase [Post 92.6 11 0.00024 43.2 19.2 152 197-382 236-414 (457)
483 PRK14235 phosphate transporter 92.5 1.3 2.7E-05 48.9 12.3 24 196-219 45-68 (267)
484 PRK06936 type III secretion sy 92.5 0.59 1.3E-05 54.1 9.8 86 195-283 161-261 (439)
485 PF03205 MobB: Molybdopterin g 92.5 0.09 1.9E-06 50.9 2.8 39 197-235 1-39 (140)
486 PRK13640 cbiO cobalt transport 92.5 0.8 1.7E-05 50.9 10.7 25 196-220 33-57 (282)
487 TIGR03498 FliI_clade3 flagella 92.5 0.51 1.1E-05 54.7 9.2 86 196-283 140-239 (418)
488 PF06745 KaiC: KaiC; InterPro 92.5 0.13 2.8E-06 55.2 4.3 44 194-237 17-60 (226)
489 PRK06793 fliI flagellum-specif 92.5 0.78 1.7E-05 53.1 10.7 121 195-320 155-292 (432)
490 PF00910 RNA_helicase: RNA hel 92.5 0.07 1.5E-06 49.1 1.9 22 199-220 1-22 (107)
491 KOG0473 Leucine-rich repeat pr 92.5 0.0062 1.4E-07 61.1 -5.3 88 593-682 30-118 (326)
492 cd03252 ABCC_Hemolysin The ABC 92.4 1.1 2.4E-05 48.4 11.6 24 196-219 28-51 (237)
493 TIGR01351 adk adenylate kinase 92.4 0.19 4.1E-06 53.1 5.4 23 199-221 2-24 (210)
494 PRK13650 cbiO cobalt transport 92.4 0.82 1.8E-05 50.7 10.7 24 196-219 33-56 (279)
495 TIGR01040 V-ATPase_V1_B V-type 92.4 0.42 9E-06 55.2 8.3 89 195-283 140-256 (466)
496 PRK11701 phnK phosphonate C-P 92.4 1 2.2E-05 49.5 11.3 25 196-220 32-56 (258)
497 PRK14528 adenylate kinase; Pro 92.4 0.21 4.5E-06 51.5 5.4 25 197-221 2-26 (186)
498 cd01428 ADK Adenylate kinase ( 92.4 0.48 1.1E-05 49.4 8.4 22 199-220 2-23 (194)
499 cd03243 ABC_MutS_homologs The 92.4 0.15 3.2E-06 53.6 4.4 22 197-218 30-51 (202)
500 cd03278 ABC_SMC_barmotin Barmo 92.4 0.5 1.1E-05 49.2 8.3 20 198-217 24-43 (197)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-84 Score=794.71 Aligned_cols=700 Identities=29% Similarity=0.436 Sum_probs=541.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhChHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhchHHHHHHh
Q 000692 6 LFLAAFLQVLFERLMSSDLLKLAGREGVRSKLKAWEKTLKTIEAVLIDAEEKQLTNRAVKIWLDDLRDLAYDAEDILDEF 85 (1349)
Q Consensus 6 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~lr~~~yd~ed~ld~~ 85 (1349)
+.++..++++.+.+. .++....++++.+..|++.|..++++++|++.++.....+..|...+++++|++||.++.+
T Consensus 3 ~~~s~~~~~~~~~l~----~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~ 78 (889)
T KOG4658|consen 3 ACVSFGVEKLDQLLN----RESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLF 78 (889)
T ss_pred eEEEEehhhHHHHHH----HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555333 3456667888999999999999999999999998888899999999999999999999999
Q ss_pred hhccCccccccccc------ccccccccccceehhhHhhHHHHHHHHHHHHHhhhccccccccCCCCCccccccCCCCCC
Q 000692 86 ASSSGTSKLRSIIH------SGCCFSGVTSVKYNISISSKIGEISRRLEELCNRRIDLRLDKIDGGGSLNNVAVGGRQRP 159 (1349)
Q Consensus 86 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (1349)
......++...... ...|+ ..++++.+..+..+.+++-++.+....++........+.. ..+....
T Consensus 79 ~v~~~~~~~~~~l~~~~~~~~~~c~-----~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~---~~~~~~~ 150 (889)
T KOG4658|consen 79 LVEEIERKANDLLSTRSVERQRLCL-----CGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGES---LDPREKV 150 (889)
T ss_pred HHHHHHHHHhHHhhhhHHHHHHHhh-----hhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceeccccc---ccchhhc
Confidence 87743332211111 00011 1456778888888889988888888888765533221100 0011111
Q ss_pred CCCCCCCCCCccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCC-Ccc-cCceEEEEecccc
Q 000692 160 PPTTCLPNEPAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKS-VED-FDPKAWVCVSDDF 237 (1349)
Q Consensus 160 ~~~~~~~~~~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~-~~~-f~~~~wv~~~~~~ 237 (1349)
++.+...... ||.+..++++.+.|.+++. ++++|+||||+||||||++++++.. ++. ||.++||.||+.+
T Consensus 151 -e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~------~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f 222 (889)
T KOG4658|consen 151 -ETRPIQSESD-VGLETMLEKLWNRLMEDDV------GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEF 222 (889)
T ss_pred -ccCCCCcccc-ccHHHHHHHHHHHhccCCC------CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccc
Confidence 1222233333 9999999999999986542 8999999999999999999999987 776 9999999999999
Q ss_pred cHHHHHHHHHHHccCCCCCc--CChHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecchh
Q 000692 238 DVLRISKVILESITLSPCEL--KDLNSVQLKLKEALFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRSVD 315 (1349)
Q Consensus 238 ~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~~ 315 (1349)
+...++++|++.++...... ...++++..+.+.|++|||+||+||||+. .+|+.+..++|....||+|++|||+..
T Consensus 223 ~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~ 300 (889)
T KOG4658|consen 223 TTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEE 300 (889)
T ss_pred cHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHh
Confidence 99999999999998754432 23478899999999999999999999998 569999999999999999999999999
Q ss_pred HHHh-hcCCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHHhhccCCChHHHHHHH
Q 000692 316 VALT-MGSGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARALGGLLRSRQRFVEWDDIL 394 (1349)
Q Consensus 316 v~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~~w~~~~ 394 (1349)
|+.. +++...++++.|+++|||+||++.+|.... ..++.++++|++|+++|+|+|||++++|+.|+.+.+..+|+++.
T Consensus 301 V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~ 379 (889)
T KOG4658|consen 301 VCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRAL 379 (889)
T ss_pred hhhccccCCccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 9998 777789999999999999999999976533 23445899999999999999999999999999999999999999
Q ss_pred hhcccccCCC-----CCchHHHHHhhcCCCHHHhHHHHHhccCCCCcccchHHHHHHHHHcCCCCCCCCCccHHHHHHHH
Q 000692 395 DSKIWDLHDE-----IEIPSVLKLSYHHLPSHLKRCFAYCAILPKDYEFEEEELVLLWIAEGLIQPSKDSKQLEDLSSEY 469 (1349)
Q Consensus 395 ~~~~~~~~~~-----~~~~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~wia~g~i~~~~~~~~~~~~~~~~ 469 (1349)
+...+....+ ..+.+++++||+.||++.|.||+|||+||+||.|+++.||.+||||||+++...+..+++.|..|
T Consensus 380 ~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~ 459 (889)
T KOG4658|consen 380 NVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDY 459 (889)
T ss_pred ccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHH
Confidence 9876552222 27889999999999999999999999999999999999999999999999877789999999999
Q ss_pred HHHHHhCcCccccC--CCCcccchhhHHHHHhhhccc-----cceEEeccc--ccCCccccccCcccEEEEEeCCCCCcc
Q 000692 470 FRDLLSRSMLQKSS--SSEYKYVMHDLVHDLAQWASG-----ETCFRLEDE--FSGDRQSNVFGKVRYSSYMSSGHCDGM 540 (1349)
Q Consensus 470 ~~~L~~~~ll~~~~--~~~~~~~~h~lv~~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~r~~s~~~~~~~~~~ 540 (1349)
+.+|++++|++... ....+|+|||+||++|.++++ ++..++... .........+..+|+++++. ...
T Consensus 460 i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~----~~~ 535 (889)
T KOG4658|consen 460 IEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMN----NKI 535 (889)
T ss_pred HHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEec----cch
Confidence 99999999999876 345789999999999999999 444444432 11122334456789999887 233
Q ss_pred ccccccccCCCccccccccccCCCCCCCchhhhhhhccCCCcccEEEecccc-ccccCccccCCCccceEEecCCCCccc
Q 000692 541 DKFKVLDKFENLRTFLPIFIEGLIPSYISPMVLSDLLPKFKKLRVLSLRRYY-ITEVPISIGCLRHLRYLNFSDTKIKCL 619 (1349)
Q Consensus 541 ~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-i~~lp~~i~~L~~Lr~L~Ls~~~i~~l 619 (1349)
........++.|+||+.+.... ....+...+|..++.||||||++|. +.++|++|++|.|||||+|+++.|+.|
T Consensus 536 ~~~~~~~~~~~L~tLll~~n~~-----~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~L 610 (889)
T KOG4658|consen 536 EHIAGSSENPKLRTLLLQRNSD-----WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHL 610 (889)
T ss_pred hhccCCCCCCccceEEEeecch-----hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcccc
Confidence 3344455667899998876421 1234556779999999999999875 789999999999999999999999999
Q ss_pred ccccccCCCCcEEEecCccCCCcCchhhhccccccEEEecCCCccccCccccccCcCCCCCCeeEeCcCCccCccccccc
Q 000692 620 PESVTSLLNLEILILRDCLHLLKLPSSIGNLVKLLHLDIEGANLLSELPLRMKELKCLQTLTNFIVSKGSGCTLKDLKNW 699 (1349)
Q Consensus 620 p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l 699 (1349)
|.++++|+.|++||+..+..+..+|..+..|.+||+|.+.... ...-...++.+.+|++|..+.+...+...+.++..+
T Consensus 611 P~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~ 689 (889)
T KOG4658|consen 611 PSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISSVLLLEDLLGM 689 (889)
T ss_pred chHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecchhHhHhhhhhh
Confidence 9999999999999999998888888878889999999997764 222223456667777777666654443223333333
Q ss_pred ccCCceEEEcCCcCCCChhhhhHhhccCCCCCCeEEEEecC
Q 000692 700 KFLRGRLCISGLENVINSQEANEAMLREKKGLKFLQLEWGA 740 (1349)
Q Consensus 700 ~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 740 (1349)
+.|.........+. .......+.+..+.+|+.|.+..+.
T Consensus 690 ~~L~~~~~~l~~~~--~~~~~~~~~~~~l~~L~~L~i~~~~ 728 (889)
T KOG4658|consen 690 TRLRSLLQSLSIEG--CSKRTLISSLGSLGNLEELSILDCG 728 (889)
T ss_pred HHHHHHhHhhhhcc--cccceeecccccccCcceEEEEcCC
Confidence 33331110000011 1222334455666777777776544
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=7.5e-62 Score=636.13 Aligned_cols=435 Identities=22% Similarity=0.310 Sum_probs=301.0
Q ss_pred CCCccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEe---ccc-------
Q 000692 167 NEPAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCV---SDD------- 236 (1349)
Q Consensus 167 ~~~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~---~~~------- 236 (1349)
....+|||++.++++..++... ...+++|+|+||||+||||||+++|++... .|+..+|+.. +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~----~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~-~F~g~vfv~~~~v~~~~~~~~~~ 256 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLE----SEEVRMVGIWGSSGIGKTTIARALFSRLSR-QFQSSVFIDRAFISKSMEIYSSA 256 (1153)
T ss_pred ccccccchHHHHHHHHHHHccc----cCceEEEEEEcCCCCchHHHHHHHHHHHhh-cCCeEEEeeccccccchhhcccc
Confidence 3456999999999999888432 346899999999999999999999997543 2888777642 111
Q ss_pred ----cc-HHHHHHHHHHHccCCCC-CcCChHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEE
Q 000692 237 ----FD-VLRISKVILESITLSPC-ELKDLNSVQLKLKEALFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVT 310 (1349)
Q Consensus 237 ----~~-~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvT 310 (1349)
+. ...++++++.++..... .... ...+++.++++|+||||||||+. ++|+.+.......++|++||||
T Consensus 257 ~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiT 330 (1153)
T PLN03210 257 NPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVI 330 (1153)
T ss_pred cccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEE
Confidence 01 12344445544432211 1111 14567788999999999999765 6788887766666789999999
Q ss_pred ecchhHHHhhcCCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHHhhccCCChHHH
Q 000692 311 TRSVDVALTMGSGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARALGGLLRSRQRFVEW 390 (1349)
Q Consensus 311 tR~~~v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~~w 390 (1349)
||++.++..++..+.|+++.+++++||+||+++||+... .++.+.+++++|+++|+|+|||++++|++|+.+ +..+|
T Consensus 331 Trd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W 407 (1153)
T PLN03210 331 TKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDW 407 (1153)
T ss_pred eCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHH
Confidence 999999988777789999999999999999999997643 245688999999999999999999999999987 67899
Q ss_pred HHHHhhcccccCCCCCchHHHHHhhcCCCH-HHhHHHHHhccCCCCcccchHHHHHHHHHcCCCCCCCCCccHHHHHHHH
Q 000692 391 DDILDSKIWDLHDEIEIPSVLKLSYHHLPS-HLKRCFAYCAILPKDYEFEEEELVLLWIAEGLIQPSKDSKQLEDLSSEY 469 (1349)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~-~~k~cf~~~~~fp~~~~i~~~~li~~wia~g~i~~~~~~~~~~~~~~~~ 469 (1349)
+.++++..... +.++.++|++||+.|++ ..|.||+++|+|+.+..++ .+..|++.+.... +..
T Consensus 408 ~~~l~~L~~~~--~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-----------~~~ 471 (1153)
T PLN03210 408 MDMLPRLRNGL--DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV-----------NIG 471 (1153)
T ss_pred HHHHHHHHhCc--cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------hhC
Confidence 99999866543 23689999999999987 5999999999999987654 4778888776532 223
Q ss_pred HHHHHhCcCccccCCCCcccchhhHHHHHhhhccccceE-------Eeccc-ccC-CccccccCcccEEEEEeCCCCCcc
Q 000692 470 FRDLLSRSMLQKSSSSEYKYVMHDLVHDLAQWASGETCF-------RLEDE-FSG-DRQSNVFGKVRYSSYMSSGHCDGM 540 (1349)
Q Consensus 470 ~~~L~~~~ll~~~~~~~~~~~~h~lv~~~~~~~~~~~~~-------~~~~~-~~~-~~~~~~~~~~r~~s~~~~~~~~~~ 540 (1349)
++.|++++|++... ..+.|||++|++|+.++.++.. ..... ... -........++++++.. ..
T Consensus 472 l~~L~~ksLi~~~~---~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~-~~---- 543 (1153)
T PLN03210 472 LKNLVDKSLIHVRE---DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDI-DE---- 543 (1153)
T ss_pred hHHHHhcCCEEEcC---CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEecc-Cc----
Confidence 78899999998643 4699999999999999865431 10000 000 00000112223332211 00
Q ss_pred ccccccccCCCccccccccccCCCCCCCchhhhhhhccCCCcccEEEecccc------cc-ccCccccCCC-ccceEEec
Q 000692 541 DKFKVLDKFENLRTFLPIFIEGLIPSYISPMVLSDLLPKFKKLRVLSLRRYY------IT-EVPISIGCLR-HLRYLNFS 612 (1349)
Q Consensus 541 ~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~------i~-~lp~~i~~L~-~Lr~L~Ls 612 (1349)
.+ ...+.+..|.++++|+.|.+..+. +. .+|..+..++ +||+|.+.
T Consensus 544 -----------~~---------------~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~ 597 (1153)
T PLN03210 544 -----------ID---------------ELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWD 597 (1153)
T ss_pred -----------cc---------------eeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEec
Confidence 00 011223345666666666665432 11 3455555543 46777777
Q ss_pred CCCCcccccccccCCCCcEEEecCccCCCcCchhhhccccccEEEecCCCccccC
Q 000692 613 DTKIKCLPESVTSLLNLEILILRDCLHLLKLPSSIGNLVKLLHLDIEGANLLSEL 667 (1349)
Q Consensus 613 ~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~ 667 (1349)
++.++.+|..+ .+.+|+.|++++| .+..+|.++..+++|+.|+++++..+..+
T Consensus 598 ~~~l~~lP~~f-~~~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~i 650 (1153)
T PLN03210 598 KYPLRCMPSNF-RPENLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEI 650 (1153)
T ss_pred CCCCCCCCCcC-CccCCcEEECcCc-cccccccccccCCCCCEEECCCCCCcCcC
Confidence 66666666665 4566777777665 46666666666777777776665433333
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.3e-41 Score=379.59 Aligned_cols=275 Identities=36% Similarity=0.638 Sum_probs=222.4
Q ss_pred chhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-cCceEEEEecccccHHHHHHHHHHHccC
Q 000692 174 RDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-FDPKAWVCVSDDFDVLRISKVILESITL 252 (1349)
Q Consensus 174 r~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 252 (1349)
||.++++|.+.|.... ...++|+|+||||+||||||.+++++...+. |+.++|+.++...+...++.+|+.+++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998633 4679999999999999999999998855555 9999999999999999999999999987
Q ss_pred CCC---CcCChHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecchhHHHhhcC-CceEeC
Q 000692 253 SPC---ELKDLNSVQLKLKEALFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRSVDVALTMGS-GGYCEL 328 (1349)
Q Consensus 253 ~~~---~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~~v~~~~~~-~~~~~l 328 (1349)
... ...+.++....+.+.++++++||||||||+. ..|+.+...++....|++||||||+..++..+.. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 743 4567788999999999999999999999876 5888888888777789999999999999877765 568999
Q ss_pred CCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHHhhccCCChHHHHHHHhhcccccCC----C
Q 000692 329 KLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARALGGLLRSRQRFVEWDDILDSKIWDLHD----E 404 (1349)
Q Consensus 329 ~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~~w~~~~~~~~~~~~~----~ 404 (1349)
++|++++|++||.+.++... ....+...+.+++|+++|+|+||||+++|++|+.+.+..+|+.+++...+...+ .
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999997655 222344567789999999999999999999997766778899988875554432 2
Q ss_pred CCchHHHHHhhcCCCHHHhHHHHHhccCCCCcccchHHHHHHHHHcCCCCC
Q 000692 405 IEIPSVLKLSYHHLPSHLKRCFAYCAILPKDYEFEEEELVLLWIAEGLIQP 455 (1349)
Q Consensus 405 ~~~~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~wia~g~i~~ 455 (1349)
..+..++.+||+.||++.|+||+|||+||+++.|+++.++++|+|+|||..
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 368899999999999999999999999999999999999999999999965
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.5e-34 Score=380.37 Aligned_cols=505 Identities=21% Similarity=0.217 Sum_probs=349.1
Q ss_pred hhhccCCCcccEEEecccccc-ccCcccc-CCCccceEEecCCCCc-ccccccccCCCCcEEEecCccCCCcCchhhhcc
Q 000692 574 SDLLPKFKKLRVLSLRRYYIT-EVPISIG-CLRHLRYLNFSDTKIK-CLPESVTSLLNLEILILRDCLHLLKLPSSIGNL 650 (1349)
Q Consensus 574 ~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~-~L~~Lr~L~Ls~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L 650 (1349)
+..|..+++|++|+|++|.+. .+|..+. .+.+||+|+|++|.++ .+|. +.+++|++|++++|.....+|..++++
T Consensus 86 ~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l 163 (968)
T PLN00113 86 SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSF 163 (968)
T ss_pred ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcC
Confidence 345667777777777777765 5665543 6777777777777765 3443 456777777777775555677777777
Q ss_pred ccccEEEecCCCccccCccccccCcCCCCCCeeEeCcCCccCcccccccccCCceEEEcCCcCCCChhhhhHhhccCCCC
Q 000692 651 VKLLHLDIEGANLLSELPLRMKELKCLQTLTNFIVSKGSGCTLKDLKNWKFLRGRLCISGLENVINSQEANEAMLREKKG 730 (1349)
Q Consensus 651 ~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~ 730 (1349)
++|++|++++|.+...+|..++++++|++|.
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~------------------------------------------------- 194 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT------------------------------------------------- 194 (968)
T ss_pred CCCCEEECccCcccccCChhhhhCcCCCeee-------------------------------------------------
Confidence 7777777777765555666666555555552
Q ss_pred CCeEEEEecCCCCCccchHHHHHHhhcCCCCCCCCcEEEeeeCC-CCCCcccCCCCCCCeeEEEEecCCCCCCCCC-CCC
Q 000692 731 LKFLQLEWGAELDDSRDKAREMNILDMLQPHRNVKGLAVNFYGG-AKFPSWVGDPSFSNIVFLILQNCKRCTSLPT-LGQ 808 (1349)
Q Consensus 731 L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~-~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~-l~~ 808 (1349)
+++ +.. ..+|..+. .+++|+.|++++|.....+|. ++.
T Consensus 195 -----L~~---------------------------------n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~ 234 (968)
T PLN00113 195 -----LAS---------------------------------NQLVGQIPRELG--QMKSLKWIYLGYNNLSGEIPYEIGG 234 (968)
T ss_pred -----ccC---------------------------------CCCcCcCChHHc--CcCCccEEECcCCccCCcCChhHhc
Confidence 221 111 12344443 588999999999987766775 899
Q ss_pred cCCCceeeecCCCCceEeCccccCCCCccCCCCcceEeccCcccccccCCCCcCccccccCcccceeecccCCCccCCCC
Q 000692 809 LCSLKDLTIVGMSGLRSVGSEIYGEGSSKPFESLQSLYFEDLQEWEHWEPNRENDEHLQAFPHLRKLSIKKCPKLSGRLP 888 (1349)
Q Consensus 809 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~lp 888 (1349)
+++|+.|+++++.....++..+ ..+++|+.|.+.++.-.. ..+..+..+++|+.|++++| .+.+.+|
T Consensus 235 l~~L~~L~L~~n~l~~~~p~~l------~~l~~L~~L~L~~n~l~~------~~p~~l~~l~~L~~L~Ls~n-~l~~~~p 301 (968)
T PLN00113 235 LTSLNHLDLVYNNLTGPIPSSL------GNLKNLQYLFLYQNKLSG------PIPPSIFSLQKLISLDLSDN-SLSGEIP 301 (968)
T ss_pred CCCCCEEECcCceeccccChhH------hCCCCCCEEECcCCeeec------cCchhHhhccCcCEEECcCC-eeccCCC
Confidence 9999999999875443444333 337889999888764221 22334556889999999888 5666666
Q ss_pred C---CCCCccEEEEeccccc---cccCCCCcccceEEEcCCCCccccCCCCCCCCceEEeccccCcccccccccccccEE
Q 000692 889 N---HLPSLEKIVITECMQL---VVSLPSLPAACKLKIDGCKRLVCDGPSESNSLSNMTLYNISEFENWSSQKFQKVEHL 962 (1349)
Q Consensus 889 ~---~l~~L~~L~l~~~~~l---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L 962 (1349)
. .+++|+.|++++|... ...+..+++|+.|++.++...... ...+..+++|+.|
T Consensus 302 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------------------p~~l~~~~~L~~L 361 (968)
T PLN00113 302 ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI--------------------PKNLGKHNNLTVL 361 (968)
T ss_pred hhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcC--------------------ChHHhCCCCCcEE
Confidence 4 4677888888877532 223445666666666554321100 0113445677777
Q ss_pred EEecCCCcccccccCCCcccccccCCcceEEeecCCCccccCCc-CCCCCcCeEEEccCCCcccccccccccCCccceEe
Q 000692 963 KIVGCEGFINEICLGKPLEGLQSLTSLKDLLIGNCPTLVSLPKA-CFLSNLREITIEDCNALTSLTDGMIHNNARLEVLR 1041 (1349)
Q Consensus 963 ~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~l~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~ 1041 (1349)
++++|.- ....|..+..+++|+.|++++|+....+|.. ..+++|+.|++++|+....+|.. +..+++|+.|+
T Consensus 362 ~Ls~n~l------~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~ 434 (968)
T PLN00113 362 DLSTNNL------TGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE-FTKLPLVYFLD 434 (968)
T ss_pred ECCCCee------EeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChh-HhcCCCCCEEE
Confidence 7776652 2344566677788888888887766666654 67788888888886655556655 78888889999
Q ss_pred ecCCCCCcccCCC-CCCCCccEEEEccccCccccccccccccCCCCCCcchhhcccccccccccccceeeccCCCCCccc
Q 000692 1042 IKGCHSLTSISRG-QLPSSLKAIEINNCQILRCVLDDTEDSCTSSSSSSSIIQEKSINSTSAYLDLESLCVFNCPSLTCL 1120 (1349)
Q Consensus 1042 l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 1120 (1349)
+++|.....++.. ..+++|+.|++++|.....++.. ...++|+.|++++|.....+
T Consensus 435 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~-----------------------~~~~~L~~L~ls~n~l~~~~ 491 (968)
T PLN00113 435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-----------------------FGSKRLENLDLSRNQFSGAV 491 (968)
T ss_pred CcCCcccCccChhhccCCCCcEEECcCceeeeecCcc-----------------------cccccceEEECcCCccCCcc
Confidence 8887655444432 23578888888888755443321 12356899999998888788
Q ss_pred ccccCCCCccceEEEcccCCccccccccCccccccceEEeccCCcccccccccCCCCcceEEecCCCCCccccccCCCCC
Q 000692 1121 SSRYQLPVTLKRLDIQMCSNFMVLTSECQLPEVLEELKIVSCPKLESIAETFFDNARLRSIQIKDCDNLRSIPKGLHNLS 1200 (1349)
Q Consensus 1121 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~ 1200 (1349)
|..+..+++|+.|++++|.....+|..+..+++|++|+|++|...+.+|..+..+++|++|++++|.....+|..+..++
T Consensus 492 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 571 (968)
T PLN00113 492 PRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVE 571 (968)
T ss_pred ChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCc
Confidence 87888889999999999988888888888889999999999988888888888889999999999987778898888999
Q ss_pred CcceEEeecCCCCcccCCCCCcCcccEEEecc
Q 000692 1201 YLHCISIEHCQNLVSFPEDLLPGAIIEFSVQN 1232 (1349)
Q Consensus 1201 ~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~ 1232 (1349)
+|+.|++++|+....+|.......+....+.+
T Consensus 572 ~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~ 603 (968)
T PLN00113 572 SLVQVNISHNHLHGSLPSTGAFLAINASAVAG 603 (968)
T ss_pred ccCEEeccCCcceeeCCCcchhcccChhhhcC
Confidence 99999999997777777654333333333333
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.6e-33 Score=372.75 Aligned_cols=510 Identities=16% Similarity=0.170 Sum_probs=379.1
Q ss_pred ccccCCCccccccccccCCCCCCCchhhhhhhccCCCcccEEEecccccc-ccCccccCCCccceEEecCCCCc-ccccc
Q 000692 545 VLDKFENLRTFLPIFIEGLIPSYISPMVLSDLLPKFKKLRVLSLRRYYIT-EVPISIGCLRHLRYLNFSDTKIK-CLPES 622 (1349)
Q Consensus 545 ~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~Lr~L~Ls~~~i~-~lp~~ 622 (1349)
.+..+++|++|..... .+...++...+..+++||+|+|++|.++ .+|. +.+.+|++|+|++|.+. .+|..
T Consensus 88 ~~~~l~~L~~L~Ls~n------~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~ 159 (968)
T PLN00113 88 AIFRLPYIQTINLSNN------QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPND 159 (968)
T ss_pred HHhCCCCCCEEECCCC------ccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChH
Confidence 4567788888865432 2233455566779999999999999987 4564 57899999999999987 78999
Q ss_pred cccCCCCcEEEecCccCCCcCchhhhccccccEEEecCCCccccCccccccCcCCCCCCeeEeCcCCccCcccccccccC
Q 000692 623 VTSLLNLEILILRDCLHLLKLPSSIGNLVKLLHLDIEGANLLSELPLRMKELKCLQTLTNFIVSKGSGCTLKDLKNWKFL 702 (1349)
Q Consensus 623 i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L 702 (1349)
++++++|++|++++|.....+|..++++++|++|++++|.....+|..++++++|++|..
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L-------------------- 219 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL-------------------- 219 (968)
T ss_pred HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC--------------------
Confidence 999999999999999777899999999999999999999877777877777776666621
Q ss_pred CceEEEcCCcCCCChhhhhHhhccCCCCCCeEEEEecCCCCCccchHHHHHHhhcCCCCCCCCcEEEeeeCCCCCCcccC
Q 000692 703 RGRLCISGLENVINSQEANEAMLREKKGLKFLQLEWGAELDDSRDKAREMNILDMLQPHRNVKGLAVNFYGGAKFPSWVG 782 (1349)
Q Consensus 703 ~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~ 782 (1349)
+++. -...+|.++.
T Consensus 220 ----------------------------------~~n~--------------------------------l~~~~p~~l~ 233 (968)
T PLN00113 220 ----------------------------------GYNN--------------------------------LSGEIPYEIG 233 (968)
T ss_pred ----------------------------------cCCc--------------------------------cCCcCChhHh
Confidence 1100 0012344443
Q ss_pred CCCCCCeeEEEEecCCCCCCCCC-CCCcCCCceeeecCCCCceEeCccccCCCCccCCCCcceEeccCcccccccCCCCc
Q 000692 783 DPSFSNIVFLILQNCKRCTSLPT-LGQLCSLKDLTIVGMSGLRSVGSEIYGEGSSKPFESLQSLYFEDLQEWEHWEPNRE 861 (1349)
Q Consensus 783 ~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~ 861 (1349)
.+++|+.|++++|.....+|. ++.+++|+.|+++++.....++..+ ..+++|+.|++.++.-. +.
T Consensus 234 --~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l------~~l~~L~~L~Ls~n~l~------~~ 299 (968)
T PLN00113 234 --GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI------FSLQKLISLDLSDNSLS------GE 299 (968)
T ss_pred --cCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhH------hhccCcCEEECcCCeec------cC
Confidence 588999999999987666774 8999999999999865433343333 23789999999876522 22
Q ss_pred CccccccCcccceeecccCCCccCCCCC---CCCCccEEEEeccccc---cccCCCCcccceEEEcCCCCccccCCCCCC
Q 000692 862 NDEHLQAFPHLRKLSIKKCPKLSGRLPN---HLPSLEKIVITECMQL---VVSLPSLPAACKLKIDGCKRLVCDGPSESN 935 (1349)
Q Consensus 862 ~~~~~~~~~~L~~L~l~~~~~L~~~lp~---~l~~L~~L~l~~~~~l---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 935 (1349)
.+..+..+++|+.|++++| .+.+.+|. .+++|+.|++.+|... ...+..+++|+.|+++++.......
T Consensus 300 ~p~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p----- 373 (968)
T PLN00113 300 IPELVIQLQNLEILHLFSN-NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP----- 373 (968)
T ss_pred CChhHcCCCCCcEEECCCC-ccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCC-----
Confidence 2334566899999999998 56566664 5789999999998632 3345567788888887654321100
Q ss_pred CCceEEeccccCcccccccccccccEEEEecCCCcccccccCCCcccccccCCcceEEeecCCCccccCCc-CCCCCcCe
Q 000692 936 SLSNMTLYNISEFENWSSQKFQKVEHLKIVGCEGFINEICLGKPLEGLQSLTSLKDLLIGNCPTLVSLPKA-CFLSNLRE 1014 (1349)
Q Consensus 936 ~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~l~~L~~ 1014 (1349)
..+..+++|+.|.+.+|. .....|..+..+++|+.|++++|.....+|.. ..+++|+.
T Consensus 374 ---------------~~~~~~~~L~~L~l~~n~------l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 432 (968)
T PLN00113 374 ---------------EGLCSSGNLFKLILFSNS------LEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYF 432 (968)
T ss_pred ---------------hhHhCcCCCCEEECcCCE------ecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCE
Confidence 012234566666666665 23345566778888999999888766666654 67888999
Q ss_pred EEEccCCCcccccccccccCCccceEeecCCCCCcccCCCCCCCCccEEEEccccCccccccccccccCCCCCCcchhhc
Q 000692 1015 ITIEDCNALTSLTDGMIHNNARLEVLRIKGCHSLTSISRGQLPSSLKAIEINNCQILRCVLDDTEDSCTSSSSSSSIIQE 1094 (1349)
Q Consensus 1015 L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~ 1094 (1349)
|++++|+....++.. +..+++|+.|++++|...+.+|.....++|+.|++++|.....++
T Consensus 433 L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~------------------- 492 (968)
T PLN00113 433 LDISNNNLQGRINSR-KWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVP------------------- 492 (968)
T ss_pred EECcCCcccCccChh-hccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccC-------------------
Confidence 999985544444443 677889999999998877777655556789999998876443332
Q ss_pred ccccccccccccceeeccCCCCCcccccccCCCCccceEEEcccCCccccccccCccccccceEEeccCCcccccccccC
Q 000692 1095 KSINSTSAYLDLESLCVFNCPSLTCLSSRYQLPVTLKRLDIQMCSNFMVLTSECQLPEVLEELKIVSCPKLESIAETFFD 1174 (1349)
Q Consensus 1095 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~ 1174 (1349)
..+..+++|+.|++++|.....+|..+..+++|++|+|++|.....+|..+..+++|+.|+|++|...+.+|..+..
T Consensus 493 ---~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 569 (968)
T PLN00113 493 ---RKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGN 569 (968)
T ss_pred ---hhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhc
Confidence 33556788999999999888888888899999999999999988888888899999999999999988899999988
Q ss_pred CCCcceEEecCCCCCccccccCCCCCCcceEEeecCCCC
Q 000692 1175 NARLRSIQIKDCDNLRSIPKGLHNLSYLHCISIEHCQNL 1213 (1349)
Q Consensus 1175 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l 1213 (1349)
+++|+.|++++|+....+|.. ..+.++....+.+|+.+
T Consensus 570 l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~l 607 (968)
T PLN00113 570 VESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDL 607 (968)
T ss_pred CcccCEEeccCCcceeeCCCc-chhcccChhhhcCCccc
Confidence 999999999999877778753 33334444455555544
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=1.3e-26 Score=241.31 Aligned_cols=280 Identities=19% Similarity=0.224 Sum_probs=160.6
Q ss_pred cccCCcceEEeecCCCccccCCc-CCCCCcCeEEEccCCCcccccccccccCCccceEeecCCCCCcccCCC----CCCC
Q 000692 984 QSLTSLKDLLIGNCPTLVSLPKA-CFLSNLREITIEDCNALTSLTDGMIHNNARLEVLRIKGCHSLTSISRG----QLPS 1058 (1349)
Q Consensus 984 ~~l~~L~~L~l~~~~~l~~~~~~-~~l~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~----~~~~ 1058 (1349)
.++++|..|++.+ ++++++|.. +.+.+|..|++++ |.++.+|.. ++++ .|+.|.+.+|+.-+ +-.. +...
T Consensus 249 ~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSN-N~is~Lp~s-Lgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~ 323 (565)
T KOG0472|consen 249 KHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSN-NDISSLPYS-LGNL-HLKFLALEGNPLRT-IRREIISKGTQE 323 (565)
T ss_pred cccccceeeeccc-cccccCchHHHHhhhhhhhcccC-CccccCCcc-cccc-eeeehhhcCCchHH-HHHHHHcccHHH
Confidence 4678888888888 568888887 8888999999999 788999887 8888 89999998876322 1110 0000
Q ss_pred CccEEEE-ccccCccccccccccccCCCCCCcchhhcccccccccccccceeeccCCCCCcccccccCCCC---ccceEE
Q 000692 1059 SLKAIEI-NNCQILRCVLDDTEDSCTSSSSSSSIIQEKSINSTSAYLDLESLCVFNCPSLTCLSSRYQLPV---TLKRLD 1134 (1349)
Q Consensus 1059 ~L~~L~l-~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~---~L~~L~ 1134 (1349)
-|+.|.= ..|..+..- ++......-....+.......-+.+.|++++ ..++.+|....... -....+
T Consensus 324 vLKyLrs~~~~dglS~s--------e~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~Vn 394 (565)
T KOG0472|consen 324 VLKYLRSKIKDDGLSQS--------EGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVN 394 (565)
T ss_pred HHHHHHHhhccCCCCCC--------cccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEe
Confidence 0111110 001111000 0000000000111122233344566666655 34455554322111 256667
Q ss_pred EcccCCccccccccCccccccceEEeccCCcccccccccCCCCcceEEecCCCCCccccccCCCCCCcceEEeecCCCCc
Q 000692 1135 IQMCSNFMVLTSECQLPEVLEELKIVSCPKLESIAETFFDNARLRSIQIKDCDNLRSIPKGLHNLSYLHCISIEHCQNLV 1214 (1349)
Q Consensus 1135 l~~~~~l~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~ 1214 (1349)
++.|. +..+|..+..+..+.+.-+.+++.+..+|..+..+++|..|++++|. +-.+|..+..+..|+.|+|+.| ...
T Consensus 395 fskNq-L~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln~LP~e~~~lv~Lq~LnlS~N-rFr 471 (565)
T KOG0472|consen 395 FSKNQ-LCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LNDLPEEMGSLVRLQTLNLSFN-RFR 471 (565)
T ss_pred cccch-HhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hhhcchhhhhhhhhheeccccc-ccc
Confidence 77654 33344444444444443344445666667677777888888888774 7778877888888888888876 555
Q ss_pred ccCCCCCcCcccEEEeccCcCccccccccccccceeeeccCCCccccCCCCC--ccccCceeecCCCCCccccccccccc
Q 000692 1215 SFPEDLLPGAIIEFSVQNCAKLKGLRVGMFNSLQDLLLWQCPGIQFFPEEGL--SANVAYLGISGDNIYKPLVKWGFHKF 1292 (1349)
Q Consensus 1215 ~lp~~~~~~~L~~L~l~~c~~l~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~--~~~L~~L~l~~~~~l~~~~~~~l~~l 1292 (1349)
.+|..... + ...+..+...++++.++.+++ ..+|+.||+.+ |.+..+++ .++++
T Consensus 472 ~lP~~~y~---------------------l-q~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp-~Lgnm 527 (565)
T KOG0472|consen 472 MLPECLYE---------------------L-QTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPP-ILGNM 527 (565)
T ss_pred cchHHHhh---------------------H-HHHHHHHhccccccccChHHhhhhhhcceeccCC-CchhhCCh-hhccc
Confidence 55542210 1 222223334456777776643 56788888877 44556655 58888
Q ss_pred CccceEEEcCCC
Q 000692 1293 TSLTALCINGCS 1304 (1349)
Q Consensus 1293 ~~L~~L~l~~c~ 1304 (1349)
++|++|+|.++|
T Consensus 528 tnL~hLeL~gNp 539 (565)
T KOG0472|consen 528 TNLRHLELDGNP 539 (565)
T ss_pred cceeEEEecCCc
Confidence 888888888844
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=4.2e-27 Score=245.00 Aligned_cols=462 Identities=21% Similarity=0.251 Sum_probs=287.5
Q ss_pred hhccCCCcccEEEeccccccccCccccCCCccceEEecCCCCcccccccccCCCCcEEEecCccCCCcCchhhhcccccc
Q 000692 575 DLLPKFKKLRVLSLRRYYITEVPISIGCLRHLRYLNFSDTKIKCLPESVTSLLNLEILILRDCLHLLKLPSSIGNLVKLL 654 (1349)
Q Consensus 575 ~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~ 654 (1349)
.-+..+..|.||++++|.+.++|.+|+.+..++.|+.++|++.++|+.++.+..|..|+.++| ...++|++|+.+..|.
T Consensus 62 ~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~ 140 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN-ELKELPDSIGRLLDLE 140 (565)
T ss_pred HhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc-ceeecCchHHHHhhhh
Confidence 345677888888888888888888888888888888888888888888888888888888887 6788888888888888
Q ss_pred EEEecCCCccccCccccccCcCCCCCCeeEeCcCCccCcccccccccCCceEEEcCCcCCCChhhhhHhhccCCCCCCeE
Q 000692 655 HLDIEGANLLSELPLRMKELKCLQTLTNFIVSKGSGCTLKDLKNWKFLRGRLCISGLENVINSQEANEAMLREKKGLKFL 734 (1349)
Q Consensus 655 ~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L 734 (1349)
.|+..+|+ +..+|.+++.+.+|..|..-. ..+.. ....
T Consensus 141 dl~~~~N~-i~slp~~~~~~~~l~~l~~~~------n~l~~-------------------------l~~~---------- 178 (565)
T KOG0472|consen 141 DLDATNNQ-ISSLPEDMVNLSKLSKLDLEG------NKLKA-------------------------LPEN---------- 178 (565)
T ss_pred hhhccccc-cccCchHHHHHHHHHHhhccc------cchhh-------------------------CCHH----------
Confidence 88888777 778888887777666653210 00000 0000
Q ss_pred EEEecCCCCCccchHHHHHHhhcCCCCCCCCcEEEeeeCCCCCCcccCCCCCCCeeEEEEecCCCCCCCCCCCCcCCCce
Q 000692 735 QLEWGAELDDSRDKAREMNILDMLQPHRNVKGLAVNFYGGAKFPSWVGDPSFSNIVFLILQNCKRCTSLPTLGQLCSLKD 814 (1349)
Q Consensus 735 ~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~ 814 (1349)
....+.|++++...+..+.+|..++ .+.+|..|+|..| .+..+|.++....|++
T Consensus 179 -----------------------~i~m~~L~~ld~~~N~L~tlP~~lg--~l~~L~~LyL~~N-ki~~lPef~gcs~L~E 232 (565)
T KOG0472|consen 179 -----------------------HIAMKRLKHLDCNSNLLETLPPELG--GLESLELLYLRRN-KIRFLPEFPGCSLLKE 232 (565)
T ss_pred -----------------------HHHHHHHHhcccchhhhhcCChhhc--chhhhHHHHhhhc-ccccCCCCCccHHHHH
Confidence 0012345556666666677787775 5788888888887 5667788888888888
Q ss_pred eeecCCCCceEeCccccCCCCccCCCCcceEeccCcccccccCCCCcCccccccCcccceeecccCCCccCCCCCCCC--
Q 000692 815 LTIVGMSGLRSVGSEIYGEGSSKPFESLQSLYFEDLQEWEHWEPNRENDEHLQAFPHLRKLSIKKCPKLSGRLPNHLP-- 892 (1349)
Q Consensus 815 L~l~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~lp~~l~-- 892 (1349)
|+++. +.++.++.+... .++++..|++.++. +++.+ ..+..+.+|++|+++++ .++ .+|..+.
T Consensus 233 lh~g~-N~i~~lpae~~~-----~L~~l~vLDLRdNk-lke~P------de~clLrsL~rLDlSNN-~is-~Lp~sLgnl 297 (565)
T KOG0472|consen 233 LHVGE-NQIEMLPAEHLK-----HLNSLLVLDLRDNK-LKEVP------DEICLLRSLERLDLSNN-DIS-SLPYSLGNL 297 (565)
T ss_pred HHhcc-cHHHhhHHHHhc-----ccccceeeeccccc-cccCc------hHHHHhhhhhhhcccCC-ccc-cCCcccccc
Confidence 88875 566666665432 26677777776643 33322 23444677777777776 454 5554443
Q ss_pred CccEEEEecccccc--ccCCCCcccceEEEcCCCCccccCCCCCCCCceEEeccccCcccccccccccccEEEEecCCCc
Q 000692 893 SLEKIVITECMQLV--VSLPSLPAACKLKIDGCKRLVCDGPSESNSLSNMTLYNISEFENWSSQKFQKVEHLKIVGCEGF 970 (1349)
Q Consensus 893 ~L~~L~l~~~~~l~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~l 970 (1349)
+|+.|.+.+|+.-+ ..+-+.+. -.-|++|.- -..|.++
T Consensus 298 hL~~L~leGNPlrTiRr~ii~~gT-------------------~~vLKyLrs---------------------~~~~dgl 337 (565)
T KOG0472|consen 298 HLKFLALEGNPLRTIRREIISKGT-------------------QEVLKYLRS---------------------KIKDDGL 337 (565)
T ss_pred eeeehhhcCCchHHHHHHHHcccH-------------------HHHHHHHHH---------------------hhccCCC
Confidence 34455555554110 00000000 000000000 0001111
Q ss_pred ccccc--------cCCCcccccccCCcceEEeecCCCccccCCc-C---CCCCcCeEEEccCCCcccccccccccCCccc
Q 000692 971 INEIC--------LGKPLEGLQSLTSLKDLLIGNCPTLVSLPKA-C---FLSNLREITIEDCNALTSLTDGMIHNNARLE 1038 (1349)
Q Consensus 971 ~~~~~--------~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~---~l~~L~~L~l~~c~~l~~l~~~~~~~l~~L~ 1038 (1349)
.+... ............+.+.|++++ ..++.+|.. . .---....+++. |.+.++|.. +..+..+.
T Consensus 338 S~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~Vnfsk-NqL~elPk~-L~~lkelv 414 (565)
T KOG0472|consen 338 SQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSK-NQLCELPKR-LVELKELV 414 (565)
T ss_pred CCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEeccc-chHhhhhhh-hHHHHHHH
Confidence 10000 000111122344555666655 445555544 1 111245566666 566666655 33333333
Q ss_pred eEeecCCCCCcccCCCCCCCCccEEEEccccCccccccccccccCCCCCCcchhhcccccccccccccceeeccCCCCCc
Q 000692 1039 VLRIKGCHSLTSISRGQLPSSLKAIEINNCQILRCVLDDTEDSCTSSSSSSSIIQEKSINSTSAYLDLESLCVFNCPSLT 1118 (1349)
Q Consensus 1039 ~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 1118 (1349)
..-+..++.+..+| ..+..+++|..|++++| .+-
T Consensus 415 T~l~lsnn~isfv~---------------------------------------------~~l~~l~kLt~L~L~NN-~Ln 448 (565)
T KOG0472|consen 415 TDLVLSNNKISFVP---------------------------------------------LELSQLQKLTFLDLSNN-LLN 448 (565)
T ss_pred HHHHhhcCccccch---------------------------------------------HHHHhhhcceeeecccc-hhh
Confidence 33233323332222 12344566777787664 566
Q ss_pred ccccccCCCCccceEEEcccCCccccccccCccccccceEEeccCCccccccc-ccCCCCcceEEecCCCCCccccccCC
Q 000692 1119 CLSSRYQLPVTLKRLDIQMCSNFMVLTSECQLPEVLEELKIVSCPKLESIAET-FFDNARLRSIQIKDCDNLRSIPKGLH 1197 (1349)
Q Consensus 1119 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~l~~lp~~~~ 1197 (1349)
.+|..++.+..|+.|+|+.| .....|..+..+..|+.+-.++ +.++.++.. +..+.+|.+|++.+|. +..+|+.++
T Consensus 449 ~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~nNd-lq~IPp~Lg 525 (565)
T KOG0472|consen 449 DLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQNND-LQQIPPILG 525 (565)
T ss_pred hcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCCCc-hhhCChhhc
Confidence 78878888888999999987 6666777777777777665555 566666654 8889999999999984 999999999
Q ss_pred CCCCcceEEeecCCC
Q 000692 1198 NLSYLHCISIEHCQN 1212 (1349)
Q Consensus 1198 ~l~~L~~L~l~~c~~ 1212 (1349)
++++|++|++++||.
T Consensus 526 nmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 526 NMTNLRHLELDGNPF 540 (565)
T ss_pred cccceeEEEecCCcc
Confidence 999999999999863
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=9.6e-22 Score=258.81 Aligned_cols=269 Identities=21% Similarity=0.362 Sum_probs=172.3
Q ss_pred cccccEEEEecCCCcccccccCCCcccccccCCcceEEeecCCCccccCCcCCCCCcCeEEEccCCCcccccccccccCC
Q 000692 956 FQKVEHLKIVGCEGFINEICLGKPLEGLQSLTSLKDLLIGNCPTLVSLPKACFLSNLREITIEDCNALTSLTDGMIHNNA 1035 (1349)
Q Consensus 956 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~l~ 1035 (1349)
+.+|..|++.++.- ...+.++..+++|+.|++++|..++.+|....+++|++|++++|..+..+|.. +.+++
T Consensus 610 ~~~L~~L~L~~s~l-------~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~ 681 (1153)
T PLN03210 610 PENLVKLQMQGSKL-------EKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSS-IQYLN 681 (1153)
T ss_pred ccCCcEEECcCccc-------cccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchh-hhccC
Confidence 45677777776641 12344567788999999998888888887778889999999999988888877 78889
Q ss_pred ccceEeecCCCCCcccCCCCCCCCccEEEEccccCccccccccccccCCCCCCcchhhcccccccccccccceeeccCCC
Q 000692 1036 RLEVLRIKGCHSLTSISRGQLPSSLKAIEINNCQILRCVLDDTEDSCTSSSSSSSIIQEKSINSTSAYLDLESLCVFNCP 1115 (1349)
Q Consensus 1036 ~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 1115 (1349)
+|+.|++++|+.++.+|....+++|+.|++++|..+..++.. .++|+.|++.++.
T Consensus 682 ~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~-------------------------~~nL~~L~L~~n~ 736 (1153)
T PLN03210 682 KLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI-------------------------STNISWLDLDETA 736 (1153)
T ss_pred CCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc-------------------------cCCcCeeecCCCc
Confidence 999999999998888887666788888888888777655421 2457788887765
Q ss_pred CCcccccccCCCCccceEEEcccCCccc-------cccccCccccccceEEeccCCcccccccccCCCCcceEEecCCCC
Q 000692 1116 SLTCLSSRYQLPVTLKRLDIQMCSNFMV-------LTSECQLPEVLEELKIVSCPKLESIAETFFDNARLRSIQIKDCDN 1188 (1349)
Q Consensus 1116 ~l~~~~~~~~~~~~L~~L~l~~~~~l~~-------~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~ 1188 (1349)
+..+|..+ .+++|++|.+.+|..... .+.....+++|+.|+|++|+.+..+|..+..+++|+.|++++|.+
T Consensus 737 -i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~ 814 (1153)
T PLN03210 737 -IEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCIN 814 (1153)
T ss_pred -cccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCC
Confidence 45566433 456777777766542211 011122344566666666666666666666666666666666666
Q ss_pred CccccccCCCCCCcceEEeecCCCCcccCCCCCcCcccEEEeccCcCccccccc--cccccceeeeccCCCccccCC
Q 000692 1189 LRSIPKGLHNLSYLHCISIEHCQNLVSFPEDLLPGAIIEFSVQNCAKLKGLRVG--MFNSLQDLLLWQCPGIQFFPE 1263 (1349)
Q Consensus 1189 l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~L~~L~l~~~~~l~~l~~ 1263 (1349)
++.+|..+ .+++|+.|++++|..+..+|. .+.+|+.|+++++ .++.+|.. .+++|+.|++++|+.+..+|.
T Consensus 815 L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~--~~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 815 LETLPTGI-NLESLESLDLSGCSRLRTFPD--ISTNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred cCeeCCCC-CccccCEEECCCCCccccccc--cccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCccCc
Confidence 66665544 456666666666665555554 2345555555552 34444322 233444445544444444443
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=4.7e-23 Score=224.80 Aligned_cols=289 Identities=21% Similarity=0.265 Sum_probs=179.7
Q ss_pred cccEEEecccccccc-CccccCCCccceEEecCCCCcccccccccCCCCcEEEecCccCCCcCc-hhhhccccccEEEec
Q 000692 582 KLRVLSLRRYYITEV-PISIGCLRHLRYLNFSDTKIKCLPESVTSLLNLEILILRDCLHLLKLP-SSIGNLVKLLHLDIE 659 (1349)
Q Consensus 582 ~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~ 659 (1349)
.-+.||+++|.++.+ +..|.++.+|+.++|..|.++.+|.......+|+.|+|.+| .+.++. +++..+..||.|||+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhh
Confidence 456799999999977 67789999999999999999999998888888999999998 555554 558889999999999
Q ss_pred CCCccccCccccccCcCCCCCCeeEeCcCCccCcccccccccCCceEEEcCCcCCCChhhhhHhhccCCCCCCeEEEEec
Q 000692 660 GANLLSELPLRMKELKCLQTLTNFIVSKGSGCTLKDLKNWKFLRGRLCISGLENVINSQEANEAMLREKKGLKFLQLEWG 739 (1349)
Q Consensus 660 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 739 (1349)
.|. +..+|.. .+....++++|+|.
T Consensus 158 rN~-is~i~~~-----------------------------------------------------sfp~~~ni~~L~La-- 181 (873)
T KOG4194|consen 158 RNL-ISEIPKP-----------------------------------------------------SFPAKVNIKKLNLA-- 181 (873)
T ss_pred hch-hhcccCC-----------------------------------------------------CCCCCCCceEEeec--
Confidence 887 5555421 11122233444443
Q ss_pred CCCCCccchHHHHHHhhcCCCCCCCCcEEEeeeCCCCCCcccCCCCCCCeeEEEEecCCCCCCCCC--CCCcCCCceeee
Q 000692 740 AELDDSRDKAREMNILDMLQPHRNVKGLAVNFYGGAKFPSWVGDPSFSNIVFLILQNCKRCTSLPT--LGQLCSLKDLTI 817 (1349)
Q Consensus 740 ~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~l 817 (1349)
+|.++.+-..-+ ..+.+|..|.|++|. +..+|. +.+||+|+.|+|
T Consensus 182 -------------------------------~N~It~l~~~~F-~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 182 -------------------------------SNRITTLETGHF-DSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDL 228 (873)
T ss_pred -------------------------------cccccccccccc-cccchheeeecccCc-ccccCHHHhhhcchhhhhhc
Confidence 333332222111 145677777777773 444553 666788888777
Q ss_pred cCCCCceEeCccccCCCCccCCCCcceEeccCcccccccCCCCcCccccccCcccceeecccCC--CccCCCCCCCCCcc
Q 000692 818 VGMSGLRSVGSEIYGEGSSKPFESLQSLYFEDLQEWEHWEPNRENDEHLQAFPHLRKLSIKKCP--KLSGRLPNHLPSLE 895 (1349)
Q Consensus 818 ~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~L~~~lp~~l~~L~ 895 (1349)
.. +.++.+... .|..+++|+.|.+..+. +|.+-..-.+.+++
T Consensus 229 nr-N~irive~l-----------------------------------tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme 272 (873)
T KOG4194|consen 229 NR-NRIRIVEGL-----------------------------------TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKME 272 (873)
T ss_pred cc-cceeeehhh-----------------------------------hhcCchhhhhhhhhhcCcccccCcceeeecccc
Confidence 65 333332111 11224444444443331 11111111223333
Q ss_pred EEEEeccccccccCCCCcccceEEEcCCCCccccCCCCCCCCceEEeccccCcccccccccccccEEEEecCCCcccccc
Q 000692 896 KIVITECMQLVVSLPSLPAACKLKIDGCKRLVCDGPSESNSLSNMTLYNISEFENWSSQKFQKVEHLKIVGCEGFINEIC 975 (1349)
Q Consensus 896 ~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~ 975 (1349)
+|++..|..
T Consensus 273 ~l~L~~N~l----------------------------------------------------------------------- 281 (873)
T KOG4194|consen 273 HLNLETNRL----------------------------------------------------------------------- 281 (873)
T ss_pred eeecccchh-----------------------------------------------------------------------
Confidence 333333211
Q ss_pred cCCCcccccccCCcceEEeecCCCccccCCc-CCCCCcCeEEEccCCCcccccccccccCCccceEeecCCCCCcccCCC
Q 000692 976 LGKPLEGLQSLTSLKDLLIGNCPTLVSLPKA-CFLSNLREITIEDCNALTSLTDGMIHNNARLEVLRIKGCHSLTSISRG 1054 (1349)
Q Consensus 976 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~l~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 1054 (1349)
......++-++++|++|++|+|..-..-+.. ...++|+.|++++ |.+++++.+.|..+..|+.|++++ +.+..+..+
T Consensus 282 ~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e~ 359 (873)
T KOG4194|consen 282 QAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSH-NSIDHLAEG 359 (873)
T ss_pred hhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccc-cccccCChhHHHHHHHhhhhcccc-cchHHHHhh
Confidence 0111234567888999999886543322222 6788999999999 889999888899999999999988 456665544
Q ss_pred CC--CCCccEEEEcccc
Q 000692 1055 QL--PSSLKAIEINNCQ 1069 (1349)
Q Consensus 1055 ~~--~~~L~~L~l~~c~ 1069 (1349)
.| .++|++|+++++.
T Consensus 360 af~~lssL~~LdLr~N~ 376 (873)
T KOG4194|consen 360 AFVGLSSLHKLDLRSNE 376 (873)
T ss_pred HHHHhhhhhhhcCcCCe
Confidence 33 4566666665543
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=3.9e-24 Score=246.62 Aligned_cols=100 Identities=36% Similarity=0.517 Sum_probs=88.9
Q ss_pred CCCcccEEEeccccccccCccccCCCccceEEecCCCCcccccccccCCCCcEEEecCccCCCcCchhhhccccccEEEe
Q 000692 579 KFKKLRVLSLRRYYITEVPISIGCLRHLRYLNFSDTKIKCLPESVTSLLNLEILILRDCLHLLKLPSSIGNLVKLLHLDI 658 (1349)
Q Consensus 579 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 658 (1349)
+.-+|++||+++|.+..+|..|+.+.+|+.|+++.|.|..+|.+++++.+|++|.|.+| .+..+|.++..+.+|++|++
T Consensus 43 ~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 43 KRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDL 121 (1081)
T ss_pred heeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc-hhhcCchhHHhhhccccccc
Confidence 33449999999999999999999999999999999999999999999999999999987 89999999999999999999
Q ss_pred cCCCccccCccccccCcCCCCC
Q 000692 659 EGANLLSELPLRMKELKCLQTL 680 (1349)
Q Consensus 659 ~~~~~~~~~p~~i~~L~~L~~L 680 (1349)
+.|. ...+|.-+..++.+..+
T Consensus 122 S~N~-f~~~Pl~i~~lt~~~~~ 142 (1081)
T KOG0618|consen 122 SFNH-FGPIPLVIEVLTAEEEL 142 (1081)
T ss_pred chhc-cCCCchhHHhhhHHHHH
Confidence 9998 67788766655544443
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.86 E-value=3.6e-24 Score=246.91 Aligned_cols=263 Identities=22% Similarity=0.207 Sum_probs=139.7
Q ss_pred cCCcceEEeecCCCccccCCc-CCCCCcCeEEEccCCCcccccccccccCCccceEeecCCCCCcccCCCCC-CCCccEE
Q 000692 986 LTSLKDLLIGNCPTLVSLPKA-CFLSNLREITIEDCNALTSLTDGMIHNNARLEVLRIKGCHSLTSISRGQL-PSSLKAI 1063 (1349)
Q Consensus 986 l~~L~~L~l~~~~~l~~~~~~-~~l~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~-~~~L~~L 1063 (1349)
..+|++++++++ .+..+|.. ..+.+|+.+.+.+ |.++.+|.. +....+|+.|.+..| .+..+|...- ..+|+.|
T Consensus 240 p~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~-N~l~~lp~r-i~~~~~L~~l~~~~n-el~yip~~le~~~sL~tL 315 (1081)
T KOG0618|consen 240 PLNLQYLDISHN-NLSNLPEWIGACANLEALNANH-NRLVALPLR-ISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTL 315 (1081)
T ss_pred cccceeeecchh-hhhcchHHHHhcccceEecccc-hhHHhhHHH-HhhhhhHHHHHhhhh-hhhhCCCcccccceeeee
Confidence 345666666663 34445533 5566777777666 556666655 445566666666553 4455543322 4566666
Q ss_pred EEccccCccccccccccccCCCCCCcchhhcccccccccc-cccceeeccCCCCCccccc-ccCCCCccceEEEcccCCc
Q 000692 1064 EINNCQILRCVLDDTEDSCTSSSSSSSIIQEKSINSTSAY-LDLESLCVFNCPSLTCLSS-RYQLPVTLKRLDIQMCSNF 1141 (1349)
Q Consensus 1064 ~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~l 1141 (1349)
++..+. +.++|+... ... .+|+.|..+.+ .+...|. .-...+.|+.|.+.+|...
T Consensus 316 dL~~N~-L~~lp~~~l---------------------~v~~~~l~~ln~s~n-~l~~lp~~~e~~~~~Lq~LylanN~Lt 372 (1081)
T KOG0618|consen 316 DLQSNN-LPSLPDNFL---------------------AVLNASLNTLNVSSN-KLSTLPSYEENNHAALQELYLANNHLT 372 (1081)
T ss_pred eehhcc-ccccchHHH---------------------hhhhHHHHHHhhhhc-cccccccccchhhHHHHHHHHhcCccc
Confidence 665542 333332100 000 01223333222 2222221 1223345666666666655
Q ss_pred cccccccCccccccceEEeccCCccccccc-ccCCCCcceEEecCCCCCccccccCCCCCCcceEEeecCCCCcccCCCC
Q 000692 1142 MVLTSECQLPEVLEELKIVSCPKLESIAET-FFDNARLRSIQIKDCDNLRSIPKGLHNLSYLHCISIEHCQNLVSFPEDL 1220 (1349)
Q Consensus 1142 ~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~ 1220 (1349)
....+.+.+..+|+.|+|++| .++++|+. +.+++.|+.|++++| +++.+|..+..+..|++|...+| .+.++|+..
T Consensus 373 d~c~p~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN-~l~~fPe~~ 449 (1081)
T KOG0618|consen 373 DSCFPVLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSN-QLLSFPELA 449 (1081)
T ss_pred ccchhhhccccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCC-ceeechhhh
Confidence 555555566666666666663 44555543 345566666666666 36666666666666666655543 455555422
Q ss_pred CcCcccEEEeccCcCccccccccccccceeeeccCCCccccCC-CCCc-cccCceeecCCCCCcccccccccccCccceE
Q 000692 1221 LPGAIIEFSVQNCAKLKGLRVGMFNSLQDLLLWQCPGIQFFPE-EGLS-ANVAYLGISGDNIYKPLVKWGFHKFTSLTAL 1298 (1349)
Q Consensus 1221 ~~~~L~~L~l~~c~~l~~l~~~~~~~L~~L~l~~~~~l~~l~~-~~~~-~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L 1298 (1349)
.+++|+.+|++. +++..+.. ...| ++|++||++||.++ ......+..+.++..+
T Consensus 450 ----------------------~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~l-~~d~~~l~~l~~l~~~ 505 (1081)
T KOG0618|consen 450 ----------------------QLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTRL-VFDHKTLKVLKSLSQM 505 (1081)
T ss_pred ----------------------hcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCccc-ccchhhhHHhhhhhhe
Confidence 234666666653 34443322 2345 89999999998764 2233345566666666
Q ss_pred EEcC
Q 000692 1299 CING 1302 (1349)
Q Consensus 1299 ~l~~ 1302 (1349)
++.-
T Consensus 506 ~i~~ 509 (1081)
T KOG0618|consen 506 DITL 509 (1081)
T ss_pred eccc
Confidence 6654
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=1.8e-22 Score=220.23 Aligned_cols=326 Identities=16% Similarity=0.172 Sum_probs=160.9
Q ss_pred CCcccccccCCcceEEeecCCCccccCCc-CCCCCcCeEEEccCCCcccccccccccCCccceEeecCCCCCcccCCCCC
Q 000692 978 KPLEGLQSLTSLKDLLIGNCPTLVSLPKA-CFLSNLREITIEDCNALTSLTDGMIHNNARLEVLRIKGCHSLTSISRGQL 1056 (1349)
Q Consensus 978 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~l~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 1056 (1349)
..+..|..+++|+.+++.+ +.++.+|.. ....+|+.|++.+ |.+.++....+..++.|+.||++. +.+..++...+
T Consensus 93 id~~~f~nl~nLq~v~l~~-N~Lt~IP~f~~~sghl~~L~L~~-N~I~sv~se~L~~l~alrslDLSr-N~is~i~~~sf 169 (873)
T KOG4194|consen 93 IDFEFFYNLPNLQEVNLNK-NELTRIPRFGHESGHLEKLDLRH-NLISSVTSEELSALPALRSLDLSR-NLISEIPKPSF 169 (873)
T ss_pred CcHHHHhcCCcceeeeecc-chhhhcccccccccceeEEeeec-cccccccHHHHHhHhhhhhhhhhh-chhhcccCCCC
Confidence 3445566777777777766 456777776 3344577888877 777777766677777888888877 45666766666
Q ss_pred C--CCccEEEEccccCcccccccccc---ccCCCCCCcchhhcccccccccccccceeeccCCCCCcccccccCCCCccc
Q 000692 1057 P--SSLKAIEINNCQILRCVLDDTED---SCTSSSSSSSIIQEKSINSTSAYLDLESLCVFNCPSLTCLSSRYQLPVTLK 1131 (1349)
Q Consensus 1057 ~--~~L~~L~l~~c~~l~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~ 1131 (1349)
| .++++|+++++. ++.+..+... .+....++.+.+.......|..+++|+.|++..|..-..-...|..+++|+
T Consensus 170 p~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~ 248 (873)
T KOG4194|consen 170 PAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQ 248 (873)
T ss_pred CCCCCceEEeecccc-ccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhh
Confidence 5 467777776654 2222211100 111111222222333333444444555555544332221122344445555
Q ss_pred eEEEcccCCccccccccCccccccceEEeccCCcccccccccCCCCcceEEecCCCCCccc-cccCCCCCCcceEEeecC
Q 000692 1132 RLDIQMCSNFMVLTSECQLPEVLEELKIVSCPKLESIAETFFDNARLRSIQIKDCDNLRSI-PKGLHNLSYLHCISIEHC 1210 (1349)
Q Consensus 1132 ~L~l~~~~~l~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c 1210 (1349)
.|.+..|..-..--+.|..+..+++|+|..|.....-..+++++++|+.|++++|. +..+ +++...+++|+.|++++|
T Consensus 249 nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~N 327 (873)
T KOG4194|consen 249 NLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSSN 327 (873)
T ss_pred hhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh-hheeecchhhhcccceeEecccc
Confidence 55555444333333444445555555555543322223344455555555555553 3222 344444555555555544
Q ss_pred CCCcccCCCCCc--CcccEEEeccCcCccccccccc---cccceeeeccCCCccccCCCC----CccccCceeecCCCCC
Q 000692 1211 QNLVSFPEDLLP--GAIIEFSVQNCAKLKGLRVGMF---NSLQDLLLWQCPGIQFFPEEG----LSANVAYLGISGDNIY 1281 (1349)
Q Consensus 1211 ~~l~~lp~~~~~--~~L~~L~l~~c~~l~~l~~~~~---~~L~~L~l~~~~~l~~l~~~~----~~~~L~~L~l~~~~~l 1281 (1349)
.|+.++++.+. .+|++|.+++ +.++.+..+.| ++|++|+++++...-.+.... -.++|+.|++.+ |++
T Consensus 328 -~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nql 404 (873)
T KOG4194|consen 328 -RITRLDEGSFRVLSQLEELNLSH-NSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQL 404 (873)
T ss_pred -ccccCChhHHHHHHHhhhhcccc-cchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-cee
Confidence 44555444332 3455555554 23444433332 255555554433221111110 034555555555 444
Q ss_pred cccccccccccCccceEEEcCCCCCcccccC
Q 000692 1282 KPLVKWGFHKFTSLTALCINGCSDAVSFPDE 1312 (1349)
Q Consensus 1282 ~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~ 1312 (1349)
+.+++..|..+.+|++|||.+ +-|.++.+.
T Consensus 405 k~I~krAfsgl~~LE~LdL~~-NaiaSIq~n 434 (873)
T KOG4194|consen 405 KSIPKRAFSGLEALEHLDLGD-NAIASIQPN 434 (873)
T ss_pred eecchhhhccCcccceecCCC-Ccceeeccc
Confidence 555555555555555555555 444444443
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=9.4e-23 Score=223.29 Aligned_cols=83 Identities=18% Similarity=0.350 Sum_probs=61.5
Q ss_pred CCCcccEEEecccccc--ccCccccCCCccceEEecCCCCcccccccccCCCCcEEEecCccCCCcCchhhhccccccEE
Q 000692 579 KFKKLRVLSLRRYYIT--EVPISIGCLRHLRYLNFSDTKIKCLPESVTSLLNLEILILRDCLHLLKLPSSIGNLVKLLHL 656 (1349)
Q Consensus 579 ~l~~Lr~L~L~~~~i~--~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L 656 (1349)
-++..|-.|+++|.++ .+|.++..+..++.|.|..+.+..+|+.++.|.+|++|.+++| .+..+..+++.|+.||.+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRLRSV 83 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhhHHH
Confidence 3456677788888776 6787777888888888877777777877777777777777776 566666667777777777
Q ss_pred EecCCC
Q 000692 657 DIEGAN 662 (1349)
Q Consensus 657 ~l~~~~ 662 (1349)
.+.+|+
T Consensus 84 ~~R~N~ 89 (1255)
T KOG0444|consen 84 IVRDNN 89 (1255)
T ss_pred hhhccc
Confidence 776665
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.77 E-value=3.5e-21 Score=211.11 Aligned_cols=106 Identities=22% Similarity=0.317 Sum_probs=88.4
Q ss_pred CCCchhhhhhhccCCCcccEEEeccccccccCccccCCCccceEEecCCCCcccccccccCCCCcEEEecCccCC-CcCc
Q 000692 566 SYISPMVLSDLLPKFKKLRVLSLRRYYITEVPISIGCLRHLRYLNFSDTKIKCLPESVTSLLNLEILILRDCLHL-LKLP 644 (1349)
Q Consensus 566 ~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~-~~lp 644 (1349)
+.++...+|.....++.++.|.|....+..+|+.++.|.+|..|.+++|++.++-..++.|+.|+.+++++|+.- .-+|
T Consensus 17 NDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP 96 (1255)
T KOG0444|consen 17 NDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIP 96 (1255)
T ss_pred CcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCC
Confidence 445555666777888999999999999999999999999999999999999988888899999999999987432 4588
Q ss_pred hhhhccccccEEEecCCCccccCccccc
Q 000692 645 SSIGNLVKLLHLDIEGANLLSELPLRMK 672 (1349)
Q Consensus 645 ~~i~~L~~L~~L~l~~~~~~~~~p~~i~ 672 (1349)
..|-+|..|..||+++|. +.+.|.++.
T Consensus 97 ~diF~l~dLt~lDLShNq-L~EvP~~LE 123 (1255)
T KOG0444|consen 97 TDIFRLKDLTILDLSHNQ-LREVPTNLE 123 (1255)
T ss_pred chhcccccceeeecchhh-hhhcchhhh
Confidence 889999999999999998 777776543
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.54 E-value=5.6e-14 Score=170.38 Aligned_cols=252 Identities=27% Similarity=0.348 Sum_probs=144.7
Q ss_pred eEEeecCCCccccCCcCCCCCcCeEEEccCCCcccccccccccCCccceEeecCCCCCcccCCCCCCCCccEEEEccccC
Q 000692 991 DLLIGNCPTLVSLPKACFLSNLREITIEDCNALTSLTDGMIHNNARLEVLRIKGCHSLTSISRGQLPSSLKAIEINNCQI 1070 (1349)
Q Consensus 991 ~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~ 1070 (1349)
.|+++++ .++.+|.. ..++|+.|++.+ |+++.+|.. +++|+.|++++| .++.+|. .+++|+.|++.+|.
T Consensus 205 ~LdLs~~-~LtsLP~~-l~~~L~~L~L~~-N~Lt~LP~l----p~~Lk~LdLs~N-~LtsLP~--lp~sL~~L~Ls~N~- 273 (788)
T PRK15387 205 VLNVGES-GLTTLPDC-LPAHITTLVIPD-NNLTSLPAL----PPELRTLEVSGN-QLTSLPV--LPPGLLELSIFSNP- 273 (788)
T ss_pred EEEcCCC-CCCcCCcc-hhcCCCEEEccC-CcCCCCCCC----CCCCcEEEecCC-ccCcccC--cccccceeeccCCc-
Confidence 4455443 34444442 223555555555 445555532 355566666553 4444442 34555555555543
Q ss_pred ccccccccccccCCCCCCcchhhcccccccccccccceeeccCCCCCcccccccCCCCccceEEEcccCCccccccccCc
Q 000692 1071 LRCVLDDTEDSCTSSSSSSSIIQEKSINSTSAYLDLESLCVFNCPSLTCLSSRYQLPVTLKRLDIQMCSNFMVLTSECQL 1150 (1349)
Q Consensus 1071 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 1150 (1349)
+..++. .+++|+.|++++|. ++.+|. .+++|+.|++++|.... ++. .
T Consensus 274 L~~Lp~-------------------------lp~~L~~L~Ls~N~-Lt~LP~---~p~~L~~LdLS~N~L~~-Lp~---l 320 (788)
T PRK15387 274 LTHLPA-------------------------LPSGLCKLWIFGNQ-LTSLPV---LPPGLQELSVSDNQLAS-LPA---L 320 (788)
T ss_pred hhhhhh-------------------------chhhcCEEECcCCc-cccccc---cccccceeECCCCcccc-CCC---C
Confidence 222221 11335566665553 344442 34567777777664332 332 3
Q ss_pred cccccceEEeccCCcccccccccCCCCcceEEecCCCCCccccccCCCCCCcceEEeecCCCCcccCCCCCcCcccEEEe
Q 000692 1151 PEVLEELKIVSCPKLESIAETFFDNARLRSIQIKDCDNLRSIPKGLHNLSYLHCISIEHCQNLVSFPEDLLPGAIIEFSV 1230 (1349)
Q Consensus 1151 ~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l 1230 (1349)
+.+|+.|++++|. ++.+|.. ..+|+.|++++| .++.+|... ++|+.|++++| .+..+|. .+++|+.|++
T Consensus 321 p~~L~~L~Ls~N~-L~~LP~l---p~~Lq~LdLS~N-~Ls~LP~lp---~~L~~L~Ls~N-~L~~LP~--l~~~L~~LdL 389 (788)
T PRK15387 321 PSELCKLWAYNNQ-LTSLPTL---PSGLQELSVSDN-QLASLPTLP---SELYKLWAYNN-RLTSLPA--LPSGLKELIV 389 (788)
T ss_pred cccccccccccCc-ccccccc---ccccceEecCCC-ccCCCCCCC---cccceehhhcc-ccccCcc--cccccceEEe
Confidence 4456677777653 3445531 146777777776 366676532 46677777765 5666665 3457777777
Q ss_pred ccCcCccccccccccccceeeeccCCCccccCCCCCccccCceeecCCCCCcccccccccccCccceEEEcCCC
Q 000692 1231 QNCAKLKGLRVGMFNSLQDLLLWQCPGIQFFPEEGLSANVAYLGISGDNIYKPLVKWGFHKFTSLTALCINGCS 1304 (1349)
Q Consensus 1231 ~~c~~l~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~c~ 1304 (1349)
+++ .++.+|. ...+|+.|++++| .+..+|. .+.+|+.|++++ |.++.++. .+.++++|+.|+|++|+
T Consensus 390 s~N-~Lt~LP~-l~s~L~~LdLS~N-~LssIP~--l~~~L~~L~Ls~-NqLt~LP~-sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 390 SGN-RLTSLPV-LPSELKELMVSGN-RLTSLPM--LPSGLLSLSVYR-NQLTRLPE-SLIHLSSETTVNLEGNP 456 (788)
T ss_pred cCC-cccCCCC-cccCCCEEEccCC-cCCCCCc--chhhhhhhhhcc-CcccccCh-HHhhccCCCeEECCCCC
Confidence 775 3666653 2457888888886 4666764 456788888887 44666654 47788899999998844
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.49 E-value=1.9e-13 Score=165.83 Aligned_cols=258 Identities=25% Similarity=0.326 Sum_probs=193.8
Q ss_pred CCcCeEEEccCCCcccccccccccCCccceEeecCCCCCcccCCCCCCCCccEEEEccccCccccccccccccCCCCCCc
Q 000692 1010 SNLREITIEDCNALTSLTDGMIHNNARLEVLRIKGCHSLTSISRGQLPSSLKAIEINNCQILRCVLDDTEDSCTSSSSSS 1089 (1349)
Q Consensus 1010 ~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~ 1089 (1349)
..-..|++++ +.++++|.. +. ++|+.|++.+ +.++.+|. .+++|+.|++++| +++.+|.
T Consensus 201 ~~~~~LdLs~-~~LtsLP~~-l~--~~L~~L~L~~-N~Lt~LP~--lp~~Lk~LdLs~N-~LtsLP~------------- 259 (788)
T PRK15387 201 NGNAVLNVGE-SGLTTLPDC-LP--AHITTLVIPD-NNLTSLPA--LPPELRTLEVSGN-QLTSLPV------------- 259 (788)
T ss_pred CCCcEEEcCC-CCCCcCCcc-hh--cCCCEEEccC-CcCCCCCC--CCCCCcEEEecCC-ccCcccC-------------
Confidence 4467889999 578899976 32 5899999998 56778874 5789999999886 5555542
Q ss_pred chhhcccccccccccccceeeccCCCCCcccccccCCCCccceEEEcccCCccccccccCccccccceEEeccCCccccc
Q 000692 1090 SIIQEKSINSTSAYLDLESLCVFNCPSLTCLSSRYQLPVTLKRLDIQMCSNFMVLTSECQLPEVLEELKIVSCPKLESIA 1169 (1349)
Q Consensus 1090 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~L~~~~~l~~~~ 1169 (1349)
.+++|+.|++.+|. +..+|. .+++|+.|++++|... .+|. .+++|++|++++| .+..+|
T Consensus 260 ------------lp~sL~~L~Ls~N~-L~~Lp~---lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N-~L~~Lp 318 (788)
T PRK15387 260 ------------LPPGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDN-QLASLP 318 (788)
T ss_pred ------------cccccceeeccCCc-hhhhhh---chhhcCEEECcCCccc-cccc---cccccceeECCCC-ccccCC
Confidence 13569999999875 556663 4578999999998544 4443 4678999999997 455566
Q ss_pred ccccCCCCcceEEecCCCCCccccccCCCCCCcceEEeecCCCCcccCCCCCcCcccEEEeccCcCccccccccccccce
Q 000692 1170 ETFFDNARLRSIQIKDCDNLRSIPKGLHNLSYLHCISIEHCQNLVSFPEDLLPGAIIEFSVQNCAKLKGLRVGMFNSLQD 1249 (1349)
Q Consensus 1170 ~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~c~~l~~l~~~~~~~L~~ 1249 (1349)
.. ..+|+.|++++|. ++.+|.. ..+|+.|++++| .+..+|. .+++|+.|+++++ .+..+|.. ..+|+.
T Consensus 319 ~l---p~~L~~L~Ls~N~-L~~LP~l---p~~Lq~LdLS~N-~Ls~LP~--lp~~L~~L~Ls~N-~L~~LP~l-~~~L~~ 386 (788)
T PRK15387 319 AL---PSELCKLWAYNNQ-LTSLPTL---PSGLQELSVSDN-QLASLPT--LPSELYKLWAYNN-RLTSLPAL-PSGLKE 386 (788)
T ss_pred CC---cccccccccccCc-ccccccc---ccccceEecCCC-ccCCCCC--CCcccceehhhcc-ccccCccc-ccccce
Confidence 52 2578899999984 7888752 258999999987 7888886 5689999999884 57777743 468999
Q ss_pred eeeccCCCccccCCCCCccccCceeecCCCCCcccccccccccCccceEEEcCCCCCcccccCcccCcCCcccceeeecc
Q 000692 1250 LLLWQCPGIQFFPEEGLSANVAYLGISGDNIYKPLVKWGFHKFTSLTALCINGCSDAVSFPDEEKGMILPTSLTWIIISD 1329 (1349)
Q Consensus 1250 L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~lp~sL~~L~l~~ 1329 (1349)
|++++| .++.+|. .+++|+.|++++| .++.++. ...+|+.|++++ +.++.+|.....+ ++|+.|++++
T Consensus 387 LdLs~N-~Lt~LP~--l~s~L~~LdLS~N-~LssIP~----l~~~L~~L~Ls~-NqLt~LP~sl~~L---~~L~~LdLs~ 454 (788)
T PRK15387 387 LIVSGN-RLTSLPV--LPSELKELMVSGN-RLTSLPM----LPSGLLSLSVYR-NQLTRLPESLIHL---SSETTVNLEG 454 (788)
T ss_pred EEecCC-cccCCCC--cccCCCEEEccCC-cCCCCCc----chhhhhhhhhcc-CcccccChHHhhc---cCCCeEECCC
Confidence 999886 5666775 4678999999995 4666653 235789999999 7789998764333 6899999998
Q ss_pred CCCcc
Q 000692 1330 FPKLE 1334 (1349)
Q Consensus 1330 c~~L~ 1334 (1349)
++ |.
T Consensus 455 N~-Ls 458 (788)
T PRK15387 455 NP-LS 458 (788)
T ss_pred CC-CC
Confidence 64 54
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.43 E-value=3.4e-15 Score=156.96 Aligned_cols=109 Identities=21% Similarity=0.256 Sum_probs=64.7
Q ss_pred hhhhhhccCCCcccEEEecccccccc-CccccCCCccceEEecC-CCCcccccc-cccCCCCcEEEecCccCCCcCchhh
Q 000692 571 MVLSDLLPKFKKLRVLSLRRYYITEV-PISIGCLRHLRYLNFSD-TKIKCLPES-VTSLLNLEILILRDCLHLLKLPSSI 647 (1349)
Q Consensus 571 ~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~Ls~-~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~i 647 (1349)
.+++.+|+.+++||.|||++|.|+.| |++|..|..|-.|-+.+ |+|+.+|+. |++|..||.|.+..|..--.....+
T Consensus 81 ~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al 160 (498)
T KOG4237|consen 81 SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDAL 160 (498)
T ss_pred cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHH
Confidence 34555666666666666666666666 66666666665555555 566666654 5666666666666653222333446
Q ss_pred hccccccEEEecCCCccccCcc-ccccCcCCCCC
Q 000692 648 GNLVKLLHLDIEGANLLSELPL-RMKELKCLQTL 680 (1349)
Q Consensus 648 ~~L~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L 680 (1349)
..|++|..|.+.+|. +..++. .+..+.+++++
T Consensus 161 ~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tl 193 (498)
T KOG4237|consen 161 RDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTL 193 (498)
T ss_pred HHhhhcchhcccchh-hhhhccccccchhccchH
Confidence 666666666666665 555554 35555555555
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.39 E-value=4.2e-14 Score=148.88 Aligned_cols=181 Identities=15% Similarity=0.193 Sum_probs=124.2
Q ss_pred cCCCCccceEEEcccCCccccccccCccccccceEEeccCCcccccccccCCCCcceEEecCCCCCccccccCCCCCCcc
Q 000692 1124 YQLPVTLKRLDIQMCSNFMVLTSECQLPEVLEELKIVSCPKLESIAETFFDNARLRSIQIKDCDNLRSIPKGLHNLSYLH 1203 (1349)
Q Consensus 1124 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~ 1203 (1349)
|..+++|++|++++|.........|.+...+++|+|..|..-..-...|..++.|++|++++|+..+.-|..|..+.+|.
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS 349 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence 67889999999999998888889999999999999999644333334567889999999999974444478899999999
Q ss_pred eEEeecCCCC-----------------cccCCCCCcCcccEEEeccCcCccccc-----------ccc----ccccceee
Q 000692 1204 CISIEHCQNL-----------------VSFPEDLLPGAIIEFSVQNCAKLKGLR-----------VGM----FNSLQDLL 1251 (1349)
Q Consensus 1204 ~L~l~~c~~l-----------------~~lp~~~~~~~L~~L~l~~c~~l~~l~-----------~~~----~~~L~~L~ 1251 (1349)
+|.+-.||-- ...|....|..++.+.+++.. ...+. .+. .+-+.+..
T Consensus 350 ~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~-~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVv 428 (498)
T KOG4237|consen 350 TLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVA-FGDFRCGGPEELGCLTSSPCPPPCTCLDTVV 428 (498)
T ss_pred eeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhcc-ccccccCCccccCCCCCCCCCCCcchhhhhH
Confidence 9999887522 122344455677777776543 11110 000 11222211
Q ss_pred eccCCCccccCCCCCccccCceeecCCCCCcccccccccccCccceEEEcCCCCCcccccC
Q 000692 1252 LWQCPGIQFFPEEGLSANVAYLGISGDNIYKPLVKWGFHKFTSLTALCINGCSDAVSFPDE 1312 (1349)
Q Consensus 1252 l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~ 1312 (1349)
=..+..++.+|. ++|...++|++.+ +.++.++.. .+.+| .+++++ +.+..+..-
T Consensus 429 RcSnk~lk~lp~-~iP~d~telyl~g-n~~~~vp~~---~~~~l-~~dls~-n~i~~Lsn~ 482 (498)
T KOG4237|consen 429 RCSNKLLKLLPR-GIPVDVTELYLDG-NAITSVPDE---LLRSL-LLDLSN-NRISSLSNY 482 (498)
T ss_pred hhcccchhhcCC-CCCchhHHHhccc-chhcccCHH---HHhhh-hccccc-Cceehhhcc
Confidence 112233555654 5778888999988 556666654 66777 889988 677777663
No 19
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.38 E-value=2.7e-11 Score=160.37 Aligned_cols=292 Identities=12% Similarity=0.177 Sum_probs=180.6
Q ss_pred CCccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEeccc-ccHHHHHHHH
Q 000692 168 EPAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDD-FDVLRISKVI 246 (1349)
Q Consensus 168 ~~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i 246 (1349)
.+.++-|..-.+.+ .. ....+++.|+|++|.||||++.++++. ++.++|+++... .+...+...+
T Consensus 13 ~~~~~~R~rl~~~l----~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~-----~~~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 13 LHNTVVRERLLAKL----SG-----ANNYRLVLVTSPAGYGKTTLISQWAAG-----KNNLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred ccccCcchHHHHHH----hc-----ccCCCeEEEECCCCCCHHHHHHHHHHh-----CCCeEEEecCcccCCHHHHHHHH
Confidence 34567776554443 21 124689999999999999999998753 236999999644 4556666666
Q ss_pred HHHccCCCCC-------------cCChHHHHHHHHHHhc--CCceEEEEeCCCCCChhhHHHhhccCC-CCCCCcEEEEE
Q 000692 247 LESITLSPCE-------------LKDLNSVQLKLKEALF--KKKYLIVLDDVWSKSYDLWQALKSPFM-VGAPDSRIIVT 310 (1349)
Q Consensus 247 ~~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~~~~~~~~~l~-~~~~gs~ilvT 310 (1349)
+..+...... ..+.......+...+. +.+++||+||+...+..........+. ...++.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 6666421110 0122233333333332 679999999996654333333333333 33466788899
Q ss_pred ecchhHH--Hhhc-CCceEeCC----CCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHHhhcc
Q 000692 311 TRSVDVA--LTMG-SGGYCELK----LLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARALGGLLRS 383 (1349)
Q Consensus 311 tR~~~v~--~~~~-~~~~~~l~----~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~ 383 (1349)
||..... ..+. .....++. +|+.+|+.++|........ . .+...+|.+.|+|.|+++..++..++.
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~---~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI---E----AAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC---C----HHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 9974211 1111 12234555 9999999999976652211 1 334577899999999999999887765
Q ss_pred CCChHHHHHHHhhcccccCC--CCCchHHH-HHhhcCCCHHHhHHHHHhccCCCCcccchHHHHHHHHHcCCCCCCCCCc
Q 000692 384 RQRFVEWDDILDSKIWDLHD--EIEIPSVL-KLSYHHLPSHLKRCFAYCAILPKDYEFEEEELVLLWIAEGLIQPSKDSK 460 (1349)
Q Consensus 384 ~~~~~~w~~~~~~~~~~~~~--~~~~~~~l-~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~wia~g~i~~~~~~~ 460 (1349)
...... ... +.+.. ...+...+ .-.|+.||++.++.++..|+++ .++.+ .+..+.+.
T Consensus 232 ~~~~~~--~~~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~------l~~~l~~~----- 291 (903)
T PRK04841 232 NNSSLH--DSA----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDA------LIVRVTGE----- 291 (903)
T ss_pred CCCchh--hhh----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHH------HHHHHcCC-----
Confidence 432100 001 11111 12355544 3348899999999999999996 33333 22222211
Q ss_pred cHHHHHHHHHHHHHhCcCccc-cCCCCcccchhhHHHHHhhhcc
Q 000692 461 QLEDLSSEYFRDLLSRSMLQK-SSSSEYKYVMHDLVHDLAQWAS 503 (1349)
Q Consensus 461 ~~~~~~~~~~~~L~~~~ll~~-~~~~~~~~~~h~lv~~~~~~~~ 503 (1349)
+.+...+++|.+++++.. .+.+..+|+.|++++++++...
T Consensus 292 ---~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 292 ---ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred ---CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 114677899999999754 3334468999999999998654
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.30 E-value=7e-12 Score=153.79 Aligned_cols=244 Identities=21% Similarity=0.344 Sum_probs=161.3
Q ss_pred CCcceEEeecCCCccccCCcCCCCCcCeEEEccCCCcccccccccccCCccceEeecCCCCCcccCCCCCCCCccEEEEc
Q 000692 987 TSLKDLLIGNCPTLVSLPKACFLSNLREITIEDCNALTSLTDGMIHNNARLEVLRIKGCHSLTSISRGQLPSSLKAIEIN 1066 (1349)
Q Consensus 987 ~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~ 1066 (1349)
.+...|+++++ .++.+|.. ..++|+.|++++ |.++.+|... +++|+.|++++| .++.+|. .++++|+.|+++
T Consensus 178 ~~~~~L~L~~~-~LtsLP~~-Ip~~L~~L~Ls~-N~LtsLP~~l---~~nL~~L~Ls~N-~LtsLP~-~l~~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKIL-GLTTIPAC-IPEQITTLILDN-NELKSLPENL---QGNIKTLYANSN-QLTSIPA-TLPDTIQEMELS 249 (754)
T ss_pred cCceEEEeCCC-CcCcCCcc-cccCCcEEEecC-CCCCcCChhh---ccCCCEEECCCC-ccccCCh-hhhccccEEECc
Confidence 45678888875 56777763 356899999998 6788998763 358999999986 5777764 356789999998
Q ss_pred cccCccccccccccccCCCCCCcchhhcccccccccccccceeeccCCCCCcccccccCCCCccceEEEcccCCcccccc
Q 000692 1067 NCQILRCVLDDTEDSCTSSSSSSSIIQEKSINSTSAYLDLESLCVFNCPSLTCLSSRYQLPVTLKRLDIQMCSNFMVLTS 1146 (1349)
Q Consensus 1067 ~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 1146 (1349)
+|. +..+|.. ...+|+.|++++| .++.+|..+ +++|+.|++++|... .+|.
T Consensus 250 ~N~-L~~LP~~------------------------l~s~L~~L~Ls~N-~L~~LP~~l--~~sL~~L~Ls~N~Lt-~LP~ 300 (754)
T PRK15370 250 INR-ITELPER------------------------LPSALQSLDLFHN-KISCLPENL--PEELRYLSVYDNSIR-TLPA 300 (754)
T ss_pred CCc-cCcCChh------------------------HhCCCCEEECcCC-ccCcccccc--CCCCcEEECCCCccc-cCcc
Confidence 875 3344321 1135888888765 455676433 358888888887543 3443
Q ss_pred ccCccccccceEEeccCCcccccccccCCCCcceEEecCCCCCccccccCCCCCCcceEEeecCCCCcccCCCCCcCccc
Q 000692 1147 ECQLPEVLEELKIVSCPKLESIAETFFDNARLRSIQIKDCDNLRSIPKGLHNLSYLHCISIEHCQNLVSFPEDLLPGAII 1226 (1349)
Q Consensus 1147 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~ 1226 (1349)
. .+++|+.|++++|. +..+|..+. ++|++|++++|. ++.+|..+. ++|+.|++++| .+..+|.. ++++|+
T Consensus 301 ~--lp~sL~~L~Ls~N~-Lt~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~l~--~sL~~L~Ls~N-~L~~LP~~-lp~~L~ 370 (754)
T PRK15370 301 H--LPSGITHLNVQSNS-LTALPETLP--PGLKTLEAGENA-LTSLPASLP--PELQVLDVSKN-QITVLPET-LPPTIT 370 (754)
T ss_pred c--chhhHHHHHhcCCc-cccCCcccc--ccceeccccCCc-cccCChhhc--CcccEEECCCC-CCCcCChh-hcCCcC
Confidence 2 24578888888764 445555443 678888888874 777776553 67888888887 56667653 356777
Q ss_pred EEEeccCcCccccccccccccceeeeccCCCccccCCCC-----CccccCceeecCCC
Q 000692 1227 EFSVQNCAKLKGLRVGMFNSLQDLLLWQCPGIQFFPEEG-----LSANVAYLGISGDN 1279 (1349)
Q Consensus 1227 ~L~l~~c~~l~~l~~~~~~~L~~L~l~~~~~l~~l~~~~-----~~~~L~~L~l~~~~ 1279 (1349)
.|++++|. ++.+|.....+|+.|++++| .+..+|... ..+++..|++.+|+
T Consensus 371 ~LdLs~N~-Lt~LP~~l~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 371 TLDVSRNA-LTNLPENLPAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred EEECCCCc-CCCCCHhHHHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 77777753 66676655557777777764 444555421 12345556665533
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.28 E-value=3.3e-12 Score=159.05 Aligned_cols=123 Identities=33% Similarity=0.437 Sum_probs=98.5
Q ss_pred CCcccEEEecccc--ccccCcc-ccCCCccceEEecCCC-CcccccccccCCCCcEEEecCccCCCcCchhhhccccccE
Q 000692 580 FKKLRVLSLRRYY--ITEVPIS-IGCLRHLRYLNFSDTK-IKCLPESVTSLLNLEILILRDCLHLLKLPSSIGNLVKLLH 655 (1349)
Q Consensus 580 l~~Lr~L~L~~~~--i~~lp~~-i~~L~~Lr~L~Ls~~~-i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~ 655 (1349)
.+.|++|-+.+|. +..++.. |..+++||+|||++|. +.+||++|++|.+||+|+++++ .+..+|.++++|.+|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhhe
Confidence 3479999999986 6777654 7889999999999874 7899999999999999999998 78899999999999999
Q ss_pred EEecCCCccccCccccccCcCCCCCCeeEeC-cCCccCcccccccccCC
Q 000692 656 LDIEGANLLSELPLRMKELKCLQTLTNFIVS-KGSGCTLKDLKNWKFLR 703 (1349)
Q Consensus 656 L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~-~~~~~~~~~L~~l~~L~ 703 (1349)
|++..+.....+|..+..|.+|++|..+... ..+...+.++.+|+.|+
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~ 671 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLE 671 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchh
Confidence 9999988777776666679999999876554 22333444444444443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.26 E-value=1.6e-13 Score=127.04 Aligned_cols=84 Identities=35% Similarity=0.463 Sum_probs=70.6
Q ss_pred CCCcccEEEeccccccccCccccCCCccceEEecCCCCcccccccccCCCCcEEEecCccCCCcCchhhhccccccEEEe
Q 000692 579 KFKKLRVLSLRRYYITEVPISIGCLRHLRYLNFSDTKIKCLPESVTSLLNLEILILRDCLHLLKLPSSIGNLVKLLHLDI 658 (1349)
Q Consensus 579 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 658 (1349)
.+.++..|-|++|.++.+|..|..|.+|++|++++|+|+++|.+++.|++|++|+++-| .+..+|.+|+.++.|+.||+
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhc
Confidence 45567778888888888888888888888888888888888888888888888888877 67888888888888888888
Q ss_pred cCCCc
Q 000692 659 EGANL 663 (1349)
Q Consensus 659 ~~~~~ 663 (1349)
++|+.
T Consensus 110 tynnl 114 (264)
T KOG0617|consen 110 TYNNL 114 (264)
T ss_pred ccccc
Confidence 88773
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.25 E-value=1.9e-11 Score=150.06 Aligned_cols=83 Identities=22% Similarity=0.411 Sum_probs=67.4
Q ss_pred CcccEEEeccccccccCccccCCCccceEEecCCCCcccccccccCCCCcEEEecCccCCCcCchhhhccccccEEEecC
Q 000692 581 KKLRVLSLRRYYITEVPISIGCLRHLRYLNFSDTKIKCLPESVTSLLNLEILILRDCLHLLKLPSSIGNLVKLLHLDIEG 660 (1349)
Q Consensus 581 ~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~ 660 (1349)
.+..+|+++++.++.+|..+. .+|+.|+|++|.|+.+|..+. .+|++|++++| .+..+|..+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcC
Confidence 456889999999999998764 589999999999999998765 58999999988 6778887664 4789999998
Q ss_pred CCccccCcccc
Q 000692 661 ANLLSELPLRM 671 (1349)
Q Consensus 661 ~~~~~~~p~~i 671 (1349)
|. +..+|..+
T Consensus 251 N~-L~~LP~~l 260 (754)
T PRK15370 251 NR-ITELPERL 260 (754)
T ss_pred Cc-cCcCChhH
Confidence 87 55666543
No 24
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.24 E-value=1.7e-09 Score=127.75 Aligned_cols=299 Identities=15% Similarity=0.072 Sum_probs=177.1
Q ss_pred CCccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-cCceEEEEecccccHHHHHHHH
Q 000692 168 EPAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-FDPKAWVCVSDDFDVLRISKVI 246 (1349)
Q Consensus 168 ~~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i 246 (1349)
+..++||+++++++...+...-. +.....+.|+|++|+|||++++.++++..... .-.++++++....+...++..+
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHH
Confidence 35699999999999999854321 22345678999999999999999998754332 2346777777777788889999
Q ss_pred HHHccCCC--CCcCChHHHHHHHHHHhc--CCceEEEEeCCCCCC----hhhHHHhhccCCCCCCC--cEEEEEecchhH
Q 000692 247 LESITLSP--CELKDLNSVQLKLKEALF--KKKYLIVLDDVWSKS----YDLWQALKSPFMVGAPD--SRIIVTTRSVDV 316 (1349)
Q Consensus 247 ~~~l~~~~--~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~----~~~~~~~~~~l~~~~~g--s~ilvTtR~~~v 316 (1349)
++++.... ....+.++....+.+.++ +++.+||+|+++.-. .+.+..+...+.. ..+ ..+|.++....+
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~ 185 (394)
T PRK00411 107 ARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTF 185 (394)
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcch
Confidence 99887521 122345666666766664 456899999996532 2233333332221 123 336666665443
Q ss_pred HHhhc-------CCceEeCCCCChhhHHHHHHHHHhcC--CCCCCchhHHHHHHHHHHHhCCChHHHHHHHHhh--cc--
Q 000692 317 ALTMG-------SGGYCELKLLSDDDCWSVFVKHAFES--RDAGTHENLESIRQKVVEKCKGLPLAARALGGLL--RS-- 383 (1349)
Q Consensus 317 ~~~~~-------~~~~~~l~~L~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l--~~-- 383 (1349)
..... ....+.+++++.++..+++..++... ...-++..++.+++......|..+.|+.++-.+. +.
T Consensus 186 ~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 186 LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 32221 12467899999999999999876322 1112223344444444444566777777664332 21
Q ss_pred C---CChHHHHHHHhhcccccCCCCCchHHHHHhhcCCCHHHhHHHHHhccCCC--CcccchHHHHH--HHHHcCCCCCC
Q 000692 384 R---QRFVEWDDILDSKIWDLHDEIEIPSVLKLSYHHLPSHLKRCFAYCAILPK--DYEFEEEELVL--LWIAEGLIQPS 456 (1349)
Q Consensus 384 ~---~~~~~w~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp~--~~~i~~~~li~--~wia~g~i~~~ 456 (1349)
. -+.++...+.+.. -.....-.+..||.+.|..+..++..-+ ...+...++.. ..+++.+-..+
T Consensus 266 ~~~~I~~~~v~~a~~~~---------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~ 336 (394)
T PRK00411 266 GSRKVTEEDVRKAYEKS---------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEP 336 (394)
T ss_pred CCCCcCHHHHHHHHHHH---------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCc
Confidence 1 1344455444432 0133455788999998877766553321 12345555443 23333221111
Q ss_pred CCCccHHHHHHHHHHHHHhCcCcccc
Q 000692 457 KDSKQLEDLSSEYFRDLLSRSMLQKS 482 (1349)
Q Consensus 457 ~~~~~~~~~~~~~~~~L~~~~ll~~~ 482 (1349)
. .......|+.+|...+++...
T Consensus 337 ~----~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 337 R----THTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred C----cHHHHHHHHHHHHhcCCeEEE
Confidence 1 123345688888888888743
No 25
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.16 E-value=5.7e-13 Score=123.50 Aligned_cols=108 Identities=30% Similarity=0.375 Sum_probs=99.3
Q ss_pred hhhhccCCCcccEEEeccccccccCccccCCCccceEEecCCCCcccccccccCCCCcEEEecCccC-CCcCchhhhccc
Q 000692 573 LSDLLPKFKKLRVLSLRRYYITEVPISIGCLRHLRYLNFSDTKIKCLPESVTSLLNLEILILRDCLH-LLKLPSSIGNLV 651 (1349)
Q Consensus 573 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~-~~~lp~~i~~L~ 651 (1349)
.+.-+..+++|.+|++.+|+|.++|.+|+.+..||.|+++-|++..+|..|+.++-|++||+.+|+. -..+|..|-.++
T Consensus 48 vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~ 127 (264)
T KOG0617|consen 48 VPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMT 127 (264)
T ss_pred cCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHH
Confidence 3445688999999999999999999999999999999999999999999999999999999998853 357899999999
Q ss_pred cccEEEecCCCccccCccccccCcCCCCCC
Q 000692 652 KLLHLDIEGANLLSELPLRMKELKCLQTLT 681 (1349)
Q Consensus 652 ~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 681 (1349)
.|+.|++++|. .+.+|..+++|++||.|.
T Consensus 128 tlralyl~dnd-fe~lp~dvg~lt~lqil~ 156 (264)
T KOG0617|consen 128 TLRALYLGDND-FEILPPDVGKLTNLQILS 156 (264)
T ss_pred HHHHHHhcCCC-cccCChhhhhhcceeEEe
Confidence 99999999998 788999999999999884
No 26
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.12 E-value=6.3e-09 Score=115.80 Aligned_cols=182 Identities=18% Similarity=0.179 Sum_probs=115.9
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHH----H-
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKE----A- 270 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~- 270 (1349)
.+++.|+|++|+||||+++.+++......+ .++|+. ....+..++++.++..++.+... .+.......+.+ .
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~-~~~~~~-~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~~ 119 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERV-VAAKLV-NTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQF 119 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCe-EEeeee-CCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHHH
Confidence 358899999999999999999987542211 123332 33446678888999888765432 222233333332 2
Q ss_pred hcCCceEEEEeCCCCCChhhHHHhhccCC---CCCCCcEEEEEecchhHHHhhc----------CCceEeCCCCChhhHH
Q 000692 271 LFKKKYLIVLDDVWSKSYDLWQALKSPFM---VGAPDSRIIVTTRSVDVALTMG----------SGGYCELKLLSDDDCW 337 (1349)
Q Consensus 271 l~~~~~LlVlDdv~~~~~~~~~~~~~~l~---~~~~gs~ilvTtR~~~v~~~~~----------~~~~~~l~~L~~~~~~ 337 (1349)
..+++.+||+||+|.-....++.+..... .......|++|.... ....+. ....+++++++.+|..
T Consensus 120 ~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~ 198 (269)
T TIGR03015 120 AAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETR 198 (269)
T ss_pred hCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHH
Confidence 26788999999998876556665542211 122233456665532 221211 1235789999999999
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHHhh
Q 000692 338 SVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARALGGLL 381 (1349)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 381 (1349)
+++...+...+......-..+..+.|++.++|.|..|..++..+
T Consensus 199 ~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 199 EYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99987764332211111234677889999999999999988876
No 27
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.09 E-value=2.6e-08 Score=116.40 Aligned_cols=299 Identities=14% Similarity=0.079 Sum_probs=170.9
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCc----cc-CceEEEEecccccHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVE----DF-DPKAWVCVSDDFDVLRIS 243 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~----~f-~~~~wv~~~~~~~~~~~~ 243 (1349)
..++||++++++|..++...-. +.....+.|+|++|+|||++++.+++..... +. -..+|+++....+...++
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 3699999999999999865321 2334578999999999999999998754211 11 246788887777778889
Q ss_pred HHHHHHcc---CCCC-CcCChHHHHHHHHHHhc--CCceEEEEeCCCCCC---hhhHHHhhccC-CCCC--CCcEEEEEe
Q 000692 244 KVILESIT---LSPC-ELKDLNSVQLKLKEALF--KKKYLIVLDDVWSKS---YDLWQALKSPF-MVGA--PDSRIIVTT 311 (1349)
Q Consensus 244 ~~i~~~l~---~~~~-~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~---~~~~~~~~~~l-~~~~--~gs~ilvTt 311 (1349)
..+++++. .... ...+..+....+.+.+. +++++||+|+++.-. .+....+.... .... ....+|+++
T Consensus 93 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~ 172 (365)
T TIGR02928 93 VELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGIS 172 (365)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEE
Confidence 99999884 2211 12234455555555553 567899999996541 11122222221 1111 234455555
Q ss_pred cchhHHHhhc-------CCceEeCCCCChhhHHHHHHHHHhcC-CCCCCchhHHHHHHHHHHHhCCChHHH-HHHHHhh-
Q 000692 312 RSVDVALTMG-------SGGYCELKLLSDDDCWSVFVKHAFES-RDAGTHENLESIRQKVVEKCKGLPLAA-RALGGLL- 381 (1349)
Q Consensus 312 R~~~v~~~~~-------~~~~~~l~~L~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~g~PLal-~~~~~~l- 381 (1349)
........+. ....+.+++.+.++..+++..++... ....-+++..+...+++....|.|-.+ .++-.+.
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5443222111 12458899999999999999887411 111122333344556777778888443 3322211
Q ss_pred -c--cC---CChHHHHHHHhhcccccCCCCCchHHHHHhhcCCCHHHhHHHHHhccCC--CCcccchHHHHHHH--HHcC
Q 000692 382 -R--SR---QRFVEWDDILDSKIWDLHDEIEIPSVLKLSYHHLPSHLKRCFAYCAILP--KDYEFEEEELVLLW--IAEG 451 (1349)
Q Consensus 382 -~--~~---~~~~~w~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp--~~~~i~~~~li~~w--ia~g 451 (1349)
+ .. -+.++...+.+.. -.....-++..||.+.|..+..++..- ++-.+...++...+ +++.
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~---------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~ 323 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKI---------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCED 323 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHH---------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHh
Confidence 1 11 1233333333321 013345577899998887666654321 33345556665533 2222
Q ss_pred CCCCCCCCccHHHHHHHHHHHHHhCcCcccc
Q 000692 452 LIQPSKDSKQLEDLSSEYFRDLLSRSMLQKS 482 (1349)
Q Consensus 452 ~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 482 (1349)
+-.. ...+.....++..|...+++...
T Consensus 324 ~~~~----~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 324 IGVD----PLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred cCCC----CCcHHHHHHHHHHHHhcCCeEEE
Confidence 1101 12234566788888888888754
No 28
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.06 E-value=1.2e-09 Score=119.19 Aligned_cols=195 Identities=19% Similarity=0.200 Sum_probs=99.8
Q ss_pred cccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHH------
Q 000692 171 VYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISK------ 244 (1349)
Q Consensus 171 ~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~------ 244 (1349)
|+||++|+++|.+++..+. .+.+.|+|+.|+|||+|++++.+.....++ .++|+...+.........
T Consensus 1 F~gR~~el~~l~~~l~~~~------~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~ 73 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP------SQHILLYGPRGSGKTSLLKEFINELKEKGY-KVVYIDFLEESNESSLRSFIEETS 73 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHCT--EE-CCCHHCCTTBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhc------CcEEEEEcCCcCCHHHHHHHHHHHhhhcCC-cEEEEecccchhhhHHHHHHHHHH
Confidence 7999999999999986532 368999999999999999999987643223 344444433332211111
Q ss_pred -------HHHHHccCCCC------CcCChHHHHHHHHHHhc--CCceEEEEeCCCCCC------hhhHHHh---hccCCC
Q 000692 245 -------VILESITLSPC------ELKDLNSVQLKLKEALF--KKKYLIVLDDVWSKS------YDLWQAL---KSPFMV 300 (1349)
Q Consensus 245 -------~i~~~l~~~~~------~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~------~~~~~~~---~~~l~~ 300 (1349)
.+...+..... ...........+.+.+. +++++||+||+.... ......+ ......
T Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~ 153 (234)
T PF01637_consen 74 LADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS 153 (234)
T ss_dssp HHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc
Confidence 11112111100 01111222233333332 356999999985432 1111222 222222
Q ss_pred CCCCcEEEEEecchhHHHh--------hcCCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChH
Q 000692 301 GAPDSRIIVTTRSVDVALT--------MGSGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPL 372 (1349)
Q Consensus 301 ~~~gs~ilvTtR~~~v~~~--------~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 372 (1349)
. ....+|++.....+... .+....+.+++|+.+++++++...+... ..- +.-++..++|...+||+|.
T Consensus 154 ~-~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 154 Q-QNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL--IKL-PFSDEDIEEIYSLTGGNPR 229 (234)
T ss_dssp --TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-HH
T ss_pred c-CCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhCCCHH
Confidence 3 34445555544444332 1222358999999999999999876433 111 1124445889999999999
Q ss_pred HHHH
Q 000692 373 AARA 376 (1349)
Q Consensus 373 al~~ 376 (1349)
.|..
T Consensus 230 ~l~~ 233 (234)
T PF01637_consen 230 YLQE 233 (234)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8864
No 29
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.03 E-value=6.4e-09 Score=118.20 Aligned_cols=275 Identities=13% Similarity=0.137 Sum_probs=147.8
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILE 248 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 248 (1349)
..|+|+++.++.+..++..... .+.....+.|+|++|+|||++|+.+++..... + .++... .......+..++.
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~-~---~~~~~~-~~~~~~~l~~~l~ 98 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEMGVN-I---RITSGP-ALEKPGDLAAILT 98 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHhCCC-e---EEEecc-cccChHHHHHHHH
Confidence 5699999999999888764321 12345678899999999999999999875432 1 122211 1111122233333
Q ss_pred HccCCCC-CcCChH----HHHHHHHHHhcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecchhHHHhhc--
Q 000692 249 SITLSPC-ELKDLN----SVQLKLKEALFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRSVDVALTMG-- 321 (1349)
Q Consensus 249 ~l~~~~~-~~~~~~----~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~~v~~~~~-- 321 (1349)
.+....- -.++.+ .....+...+.+.+..+|+|+..+.. .+...+ .+.+-|..|+|...+...+.
T Consensus 99 ~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~-----~~~~~l---~~~~li~at~~~~~l~~~L~sR 170 (328)
T PRK00080 99 NLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAAR-----SIRLDL---PPFTLIGATTRAGLLTSPLRDR 170 (328)
T ss_pred hcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccc-----ceeecC---CCceEEeecCCcccCCHHHHHh
Confidence 3321110 001111 11222334444445555555543221 011111 12445666777544333221
Q ss_pred CCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHHhhccCCChHHHHHHHhhccccc
Q 000692 322 SGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARALGGLLRSRQRFVEWDDILDSKIWDL 401 (1349)
Q Consensus 322 ~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~~w~~~~~~~~~~~ 401 (1349)
....+++++++.++..+++.+.+......-+ .+....|++.|+|.|-.+..+...+. .|...... ..
T Consensus 171 f~~~~~l~~~~~~e~~~il~~~~~~~~~~~~----~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~~---~~ 237 (328)
T PRK00080 171 FGIVQRLEFYTVEELEKIVKRSARILGVEID----EEGALEIARRSRGTPRIANRLLRRVR------DFAQVKGD---GV 237 (328)
T ss_pred cCeeeecCCCCHHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcCC---CC
Confidence 1246899999999999999988754332221 34567899999999965544443321 22211110 00
Q ss_pred CCCC---CchHHHHHhhcCCCHHHhHHHH-HhccCCCCcccchHHHHHHHHHcCCCCCCCCCccHHHHHHHHHH-HHHhC
Q 000692 402 HDEI---EIPSVLKLSYHHLPSHLKRCFA-YCAILPKDYEFEEEELVLLWIAEGLIQPSKDSKQLEDLSSEYFR-DLLSR 476 (1349)
Q Consensus 402 ~~~~---~~~~~l~~sy~~L~~~~k~cf~-~~~~fp~~~~i~~~~li~~wia~g~i~~~~~~~~~~~~~~~~~~-~L~~~ 476 (1349)
-... .....+...|..|++..+..+. ....|+.+ .+..+.+.... - .+.. .+++.++ .|++.
T Consensus 238 I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l-----g---~~~~----~~~~~~e~~Li~~ 304 (328)
T PRK00080 238 ITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL-----G---EERD----TIEDVYEPYLIQQ 304 (328)
T ss_pred CCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH-----C---CCcc----hHHHHhhHHHHHc
Confidence 0000 2334456677889888888775 67777665 45555543322 1 1112 2344445 78999
Q ss_pred cCccccC
Q 000692 477 SMLQKSS 483 (1349)
Q Consensus 477 ~ll~~~~ 483 (1349)
+|++...
T Consensus 305 ~li~~~~ 311 (328)
T PRK00080 305 GFIQRTP 311 (328)
T ss_pred CCcccCC
Confidence 9997544
No 30
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.02 E-value=1.2e-08 Score=120.08 Aligned_cols=294 Identities=16% Similarity=0.176 Sum_probs=183.4
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccc-cHHHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDF-DVLRISKVIL 247 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~ 247 (1349)
...+-|. ++.+.|.. ....+.+.|..++|.||||++.+.+.. ...-..+.|+++.+.. ++..+...++
T Consensus 19 ~~~v~R~----rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~~--~~~~~~v~Wlslde~dndp~rF~~yLi 87 (894)
T COG2909 19 DNYVVRP----RLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWREL--AADGAAVAWLSLDESDNDPARFLSYLI 87 (894)
T ss_pred ccccccH----HHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHHh--cCcccceeEeecCCccCCHHHHHHHHH
Confidence 3455554 45555542 246799999999999999999998762 2224569999987644 5777777887
Q ss_pred HHccCCCC-------------CcCChHHHHHHHHHHhc--CCceEEEEeCCCCCChhhHHHhhcc-CCCCCCCcEEEEEe
Q 000692 248 ESITLSPC-------------ELKDLNSVQLKLKEALF--KKKYLIVLDDVWSKSYDLWQALKSP-FMVGAPDSRIIVTT 311 (1349)
Q Consensus 248 ~~l~~~~~-------------~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~~~~~~~~~-l~~~~~gs~ilvTt 311 (1349)
..++.-.. ...+...+.+.+...+. .++..+|+||..-........-... +....++-.+||||
T Consensus 88 ~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~S 167 (894)
T COG2909 88 AALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTS 167 (894)
T ss_pred HHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEe
Confidence 77763211 12233334444444333 4689999999865433333332222 23345788999999
Q ss_pred cchhHHHhh--c-CCceEeC----CCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHHhhccC
Q 000692 312 RSVDVALTM--G-SGGYCEL----KLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARALGGLLRSR 384 (1349)
Q Consensus 312 R~~~v~~~~--~-~~~~~~l----~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~ 384 (1349)
|+..-.... . ....+++ =.|+.+|+.++|...... .-+ +.-...+.+...|-+-|+..++-.++.+
T Consensus 168 R~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l---~Ld----~~~~~~L~~~teGW~~al~L~aLa~~~~ 240 (894)
T COG2909 168 RSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL---PLD----AADLKALYDRTEGWAAALQLIALALRNN 240 (894)
T ss_pred ccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC---CCC----hHHHHHHHhhcccHHHHHHHHHHHccCC
Confidence 986432110 0 1112222 358999999999766421 111 3334667999999999999999988844
Q ss_pred CChHHHHHHHhhcccccCCCCCch-HHHHHhhcCCCHHHhHHHHHhccCCCCcccchHHHHHHHHHcCCCCCCCCCccHH
Q 000692 385 QRFVEWDDILDSKIWDLHDEIEIP-SVLKLSYHHLPSHLKRCFAYCAILPKDYEFEEEELVLLWIAEGLIQPSKDSKQLE 463 (1349)
Q Consensus 385 ~~~~~w~~~~~~~~~~~~~~~~~~-~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~wia~g~i~~~~~~~~~~ 463 (1349)
.+.+.-...+... ...+. -...--++.||+++|..++-+|+++.= . +.|+..- .+ +
T Consensus 241 ~~~~q~~~~LsG~------~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f---~-~eL~~~L-----tg--------~ 297 (894)
T COG2909 241 TSAEQSLRGLSGA------ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF---N-DELCNAL-----TG--------E 297 (894)
T ss_pred CcHHHHhhhccch------HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh---h-HHHHHHH-----hc--------C
Confidence 3333222211100 00011 123446789999999999999999642 1 2333221 11 1
Q ss_pred HHHHHHHHHHHhCcCcc-ccCCCCcccchhhHHHHHhhhcc
Q 000692 464 DLSSEYFRDLLSRSMLQ-KSSSSEYKYVMHDLVHDLAQWAS 503 (1349)
Q Consensus 464 ~~~~~~~~~L~~~~ll~-~~~~~~~~~~~h~lv~~~~~~~~ 503 (1349)
+-|...+++|.+++++. +-++...+|+.|.+..||.+.--
T Consensus 298 ~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~ 338 (894)
T COG2909 298 ENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRL 338 (894)
T ss_pred CcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhh
Confidence 23667799999999985 44566789999999999987543
No 31
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.96 E-value=2.6e-08 Score=112.82 Aligned_cols=275 Identities=15% Similarity=0.113 Sum_probs=148.2
Q ss_pred ccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHH
Q 000692 170 AVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILES 249 (1349)
Q Consensus 170 ~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 249 (1349)
.|+|+++.++++..++..... .......+.++|++|+|||+||+.+++..... + ..+..+....... +...+..
T Consensus 5 ~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~-~---~~~~~~~~~~~~~-l~~~l~~ 78 (305)
T TIGR00635 5 EFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEMGVN-L---KITSGPALEKPGD-LAAILTN 78 (305)
T ss_pred HHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC-E---EEeccchhcCchh-HHHHHHh
Confidence 599999999999988864322 12345568899999999999999999875432 1 1222111111111 2222223
Q ss_pred ccCCCC-CcCCh----HHHHHHHHHHhcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecchhHHHhhc--C
Q 000692 250 ITLSPC-ELKDL----NSVQLKLKEALFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRSVDVALTMG--S 322 (1349)
Q Consensus 250 l~~~~~-~~~~~----~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~~v~~~~~--~ 322 (1349)
+....- -.++. ...+..+...+.+.+..+|+|+..... .| ...+ .+.+-|..||+...+...+. .
T Consensus 79 ~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~--~~---~~~~---~~~~li~~t~~~~~l~~~l~sR~ 150 (305)
T TIGR00635 79 LEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSAR--SV---RLDL---PPFTLVGATTRAGMLTSPLRDRF 150 (305)
T ss_pred cccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCcccc--ce---eecC---CCeEEEEecCCccccCHHHHhhc
Confidence 321110 00111 112333445555556666666653321 11 1112 23455666777654433221 1
Q ss_pred CceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHHhhccCCChHHHHHHHhhcccccC
Q 000692 323 GGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARALGGLLRSRQRFVEWDDILDSKIWDLH 402 (1349)
Q Consensus 323 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~~w~~~~~~~~~~~~ 402 (1349)
...+++++++.++..+++.+.+......- + .+....|++.|+|.|-.+..++..+. ............
T Consensus 151 ~~~~~l~~l~~~e~~~il~~~~~~~~~~~-~---~~al~~ia~~~~G~pR~~~~ll~~~~--------~~a~~~~~~~it 218 (305)
T TIGR00635 151 GIILRLEFYTVEELAEIVSRSAGLLNVEI-E---PEAALEIARRSRGTPRIANRLLRRVR--------DFAQVRGQKIIN 218 (305)
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHhCCCc-C---HHHHHHHHHHhCCCcchHHHHHHHHH--------HHHHHcCCCCcC
Confidence 24678999999999999998875332221 1 34557789999999976654444321 110000000000
Q ss_pred CC--CCchHHHHHhhcCCCHHHhHHHH-HhccCCCCcccchHHHHHHHHHcCCCCCCCCCccHHHHHHHHHH-HHHhCcC
Q 000692 403 DE--IEIPSVLKLSYHHLPSHLKRCFA-YCAILPKDYEFEEEELVLLWIAEGLIQPSKDSKQLEDLSSEYFR-DLLSRSM 478 (1349)
Q Consensus 403 ~~--~~~~~~l~~sy~~L~~~~k~cf~-~~~~fp~~~~i~~~~li~~wia~g~i~~~~~~~~~~~~~~~~~~-~L~~~~l 478 (1349)
.. ......+...|..++++.+..+. ..+.++.+ .+..+.+.... - . . ...++..++ .|++++|
T Consensus 219 ~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l-----g-~--~----~~~~~~~~e~~Li~~~l 285 (305)
T TIGR00635 219 RDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL-----G-E--D----ADTIEDVYEPYLLQIGF 285 (305)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh-----C-C--C----cchHHHhhhHHHHHcCC
Confidence 00 01222345678889988887666 55767544 34444433222 1 1 1 123556677 6999999
Q ss_pred ccccC
Q 000692 479 LQKSS 483 (1349)
Q Consensus 479 l~~~~ 483 (1349)
+....
T Consensus 286 i~~~~ 290 (305)
T TIGR00635 286 LQRTP 290 (305)
T ss_pred cccCC
Confidence 97544
No 32
>PF05729 NACHT: NACHT domain
Probab=98.90 E-value=6.7e-09 Score=106.26 Aligned_cols=143 Identities=20% Similarity=0.245 Sum_probs=89.1
Q ss_pred EEEEEEccCCChHHHHHHHHHcCCCCcc-----cCceEEEEecccccHH---HHHHHHHHHccCCCCCcCChHHHHHHHH
Q 000692 197 RLIPIVGMGGIGKTTLAREVYNDKSVED-----FDPKAWVCVSDDFDVL---RISKVILESITLSPCELKDLNSVQLKLK 268 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~-----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 268 (1349)
|++.|+|.+|+||||+++.++.+..... +..++|+......... .+...+........ .........
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~~~-- 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEELLQE-- 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHHHHHH--
Confidence 5789999999999999999987754433 3456677766544332 33333333332111 111111111
Q ss_pred HHhcCCceEEEEeCCCCCCh--h-----hHHHhhccCCC--CCCCcEEEEEecchhH---HHhhcCCceEeCCCCChhhH
Q 000692 269 EALFKKKYLIVLDDVWSKSY--D-----LWQALKSPFMV--GAPDSRIIVTTRSVDV---ALTMGSGGYCELKLLSDDDC 336 (1349)
Q Consensus 269 ~~l~~~~~LlVlDdv~~~~~--~-----~~~~~~~~l~~--~~~gs~ilvTtR~~~v---~~~~~~~~~~~l~~L~~~~~ 336 (1349)
...+.++++||+|++++... . .+..+...+.. ..++.+++||+|.... .........+++++|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 12257899999999965322 1 12233322222 2578999999998665 33344445799999999999
Q ss_pred HHHHHHHH
Q 000692 337 WSVFVKHA 344 (1349)
Q Consensus 337 ~~l~~~~~ 344 (1349)
.+++.++.
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99997764
No 33
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.77 E-value=2.3e-08 Score=111.20 Aligned_cols=158 Identities=22% Similarity=0.415 Sum_probs=96.6
Q ss_pred cccccceeeccCCCCCcccccccCCCCccceEEEcccCCccccccccCccccccceEEeccCCcccccccccCCCCcceE
Q 000692 1102 AYLDLESLCVFNCPSLTCLSSRYQLPVTLKRLDIQMCSNFMVLTSECQLPEVLEELKIVSCPKLESIAETFFDNARLRSI 1181 (1349)
Q Consensus 1102 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L 1181 (1349)
.+.+++.|++++| .++.+| ..+++|++|.+++|..+..+|.. .+++|++|++++|..+..+| ++|+.|
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~--LP~nLe~L~Ls~Cs~L~sLP------~sLe~L 117 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLP---VLPNELTEITIENCNNLTTLPGS--IPEGLEKLTVCHCPEISGLP------ESVRSL 117 (426)
T ss_pred HhcCCCEEEeCCC-CCcccC---CCCCCCcEEEccCCCCcccCCch--hhhhhhheEccCcccccccc------cccceE
Confidence 3466888888888 677777 45677888888888887766653 35678888888887666665 456667
Q ss_pred EecCCC--CCccccccCCCCCCcceEEeecCCCCcccC-CCCCcCcccEEEeccCcCccccccccccccceeeeccCCCc
Q 000692 1182 QIKDCD--NLRSIPKGLHNLSYLHCISIEHCQNLVSFP-EDLLPGAIIEFSVQNCAKLKGLRVGMFNSLQDLLLWQCPGI 1258 (1349)
Q Consensus 1182 ~l~~~~--~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~~~L~~L~l~~c~~l~~l~~~~~~~L~~L~l~~~~~l 1258 (1349)
++..+. .+..+|. +|+.|.+.++......+ ...+|++|++|.+++|..+ .+|.....+|+.|.++.+...
T Consensus 118 ~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP~SLk~L~ls~n~~~ 190 (426)
T PRK15386 118 EIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLPESLQSITLHIEQKT 190 (426)
T ss_pred EeCCCCCcccccCcc------hHhheeccccccccccccccccCCcccEEEecCCCcc-cCcccccccCcEEEecccccc
Confidence 766532 2445553 45666664432111111 1246677777777777744 344444457777777654211
Q ss_pred -cccCCCCCccccCceeecCCC
Q 000692 1259 -QFFPEEGLSANVAYLGISGDN 1279 (1349)
Q Consensus 1259 -~~l~~~~~~~~L~~L~l~~~~ 1279 (1349)
-.++...+|.++ .|++.+|-
T Consensus 191 sLeI~~~sLP~nl-~L~f~n~l 211 (426)
T PRK15386 191 TWNISFEGFPDGL-DIDLQNSV 211 (426)
T ss_pred cccCccccccccc-Eechhhhc
Confidence 124444556666 66666653
No 34
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.74 E-value=1.9e-06 Score=102.55 Aligned_cols=209 Identities=11% Similarity=0.041 Sum_probs=122.9
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCC----ccc--CceEEEEecccccHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSV----EDF--DPKAWVCVSDDFDVLRI 242 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~----~~f--~~~~wv~~~~~~~~~~~ 242 (1349)
..+.||++|+++|...|...-. +.....++.|+|.+|.|||++++.|.+.... ... -.+++|.+....+...+
T Consensus 755 D~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 4688999999999999875432 2223467889999999999999999765421 111 23678888777778888
Q ss_pred HHHHHHHccCCCC-CcCChHHHHHHHHHHhc---CCceEEEEeCCCCCC---hhhHHHhhccCCCCCCCcEEEE--Eecc
Q 000692 243 SKVILESITLSPC-ELKDLNSVQLKLKEALF---KKKYLIVLDDVWSKS---YDLWQALKSPFMVGAPDSRIIV--TTRS 313 (1349)
Q Consensus 243 ~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~---~~~~LlVlDdv~~~~---~~~~~~~~~~l~~~~~gs~ilv--TtR~ 313 (1349)
+..|++++..... ......+....+...+. +...+||||+++.-. .+.+-.+... ....+++|+| ++.+
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~--~~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDW--PTKINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHH--hhccCCeEEEEEecCc
Confidence 8888888843322 22223344444444432 234589999995421 1112122221 1124555544 3332
Q ss_pred hh--------HHHhhcCCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHHhh
Q 000692 314 VD--------VALTMGSGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARALGGLL 381 (1349)
Q Consensus 314 ~~--------v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 381 (1349)
.+ +...++ ...+..+|.+.++-.+++..++......-++..++-+|+.++..-|-.=.||.++-.+.
T Consensus 912 lDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 912 MDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 11 222222 12467799999999999999885432222333445555544444444456665554443
No 35
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.68 E-value=3.9e-10 Score=120.68 Aligned_cols=276 Identities=15% Similarity=0.214 Sum_probs=139.5
Q ss_pred cccEEEEecCCCcccccccCCCcccccccCCcceEEeecCCCccccCCc---CCCCCcCeEEEccCCCccccccc-cccc
Q 000692 958 KVEHLKIVGCEGFINEICLGKPLEGLQSLTSLKDLLIGNCPTLVSLPKA---CFLSNLREITIEDCNALTSLTDG-MIHN 1033 (1349)
Q Consensus 958 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~---~~l~~L~~L~l~~c~~l~~l~~~-~~~~ 1033 (1349)
.|+.|.+.+|....... .-......|++++|.+.+|.+++...-. ..++.|++|++..|..++...-. ...+
T Consensus 139 ~lk~LSlrG~r~v~~ss----lrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g 214 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSS----LRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG 214 (483)
T ss_pred ccccccccccccCCcch----hhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence 45566666666433111 1112356778888888888776643322 57788888888888887765322 2356
Q ss_pred CCccceEeecCCCCCcccCCCCC---CCCccEEEEccccCccccccccccccCCCCCCcchhhcccccccccccccceee
Q 000692 1034 NARLEVLRIKGCHSLTSISRGQL---PSSLKAIEINNCQILRCVLDDTEDSCTSSSSSSSIIQEKSINSTSAYLDLESLC 1110 (1349)
Q Consensus 1034 l~~L~~L~l~~c~~l~~~~~~~~---~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 1110 (1349)
+++|+.|+++.|+.+..-....+ ...++.+...+|..++. +
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~l---------------------------------e--- 258 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELEL---------------------------------E--- 258 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccH---------------------------------H---
Confidence 78888888888887765211111 11233333333332210 0
Q ss_pred ccCCCCCcccccccCCCCccceEEEcccCCccccc--cccCccccccceEEeccCCcccccc--cccCCCCcceEEecCC
Q 000692 1111 VFNCPSLTCLSSRYQLPVTLKRLDIQMCSNFMVLT--SECQLPEVLEELKIVSCPKLESIAE--TFFDNARLRSIQIKDC 1186 (1349)
Q Consensus 1111 l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~L~~L~L~~~~~l~~~~~--~~~~l~~L~~L~l~~~ 1186 (1349)
.+-..-....-+.++++..|..++... ..-.++..|+.|..++|..++..+- -..+.++|+.|.++.|
T Consensus 259 --------~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c 330 (483)
T KOG4341|consen 259 --------ALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGC 330 (483)
T ss_pred --------HHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEecccc
Confidence 010011222334445555554443221 1223455666666666666554332 2234577777777777
Q ss_pred CCCcccccc--CCCCCCcceEEeecCCCCcccCC---CCCcCcccEEEeccCcCccccccccc-------cccceeeecc
Q 000692 1187 DNLRSIPKG--LHNLSYLHCISIEHCQNLVSFPE---DLLPGAIIEFSVQNCAKLKGLRVGMF-------NSLQDLLLWQ 1254 (1349)
Q Consensus 1187 ~~l~~lp~~--~~~l~~L~~L~l~~c~~l~~lp~---~~~~~~L~~L~l~~c~~l~~l~~~~~-------~~L~~L~l~~ 1254 (1349)
+.++..... -.+++.|+.+++.+|..+..-.- ....+.|+.+.+++|..++......+ ..|+.+.+.+
T Consensus 331 ~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n 410 (483)
T KOG4341|consen 331 QQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDN 410 (483)
T ss_pred chhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecC
Confidence 665543111 23466777777777644332210 11224566666666665555422221 2455566666
Q ss_pred CCCccccCCCC--CccccCceeecCCCCC
Q 000692 1255 CPGIQFFPEEG--LSANVAYLGISGDNIY 1281 (1349)
Q Consensus 1255 ~~~l~~l~~~~--~~~~L~~L~l~~~~~l 1281 (1349)
|+.++.-.... ..++|+.+++.+|...
T Consensus 411 ~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 411 CPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred CCCchHHHHHHHhhCcccceeeeechhhh
Confidence 65554322111 1234555555555544
No 36
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.61 E-value=4.3e-09 Score=121.02 Aligned_cols=107 Identities=13% Similarity=0.098 Sum_probs=52.4
Q ss_pred ccccceeeccCCCCCcccccccCCC---CccceEEEcccCCcc----ccccccCcc-ccccceEEeccCCcc----cccc
Q 000692 1103 YLDLESLCVFNCPSLTCLSSRYQLP---VTLKRLDIQMCSNFM----VLTSECQLP-EVLEELKIVSCPKLE----SIAE 1170 (1349)
Q Consensus 1103 ~~~L~~L~l~~~~~l~~~~~~~~~~---~~L~~L~l~~~~~l~----~~~~~~~~~-~~L~~L~L~~~~~l~----~~~~ 1170 (1349)
+++|+.|++++|+.....+..+..+ ++|++|++++|.... .+...+..+ ++|++|++++|.... .++.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 4456666666655443222222222 336666666665431 111122233 566666666665431 2223
Q ss_pred cccCCCCcceEEecCCCCCc-----cccccCCCCCCcceEEeecC
Q 000692 1171 TFFDNARLRSIQIKDCDNLR-----SIPKGLHNLSYLHCISIEHC 1210 (1349)
Q Consensus 1171 ~~~~l~~L~~L~l~~~~~l~-----~lp~~~~~l~~L~~L~l~~c 1210 (1349)
.+..+++|++|++++|. ++ .++..+..+++|+.|++++|
T Consensus 160 ~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n 203 (319)
T cd00116 160 ALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNN 203 (319)
T ss_pred HHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCC
Confidence 33444566666666664 32 22333444556666666666
No 37
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.58 E-value=2.5e-07 Score=103.11 Aligned_cols=60 Identities=22% Similarity=0.479 Sum_probs=32.8
Q ss_pred CCCcCeEEEccCCCcccccccccccCCccceEeecCCCCCcccCCCCCCCCccEEEEccccCcccc
Q 000692 1009 LSNLREITIEDCNALTSLTDGMIHNNARLEVLRIKGCHSLTSISRGQLPSSLKAIEINNCQILRCV 1074 (1349)
Q Consensus 1009 l~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l 1074 (1349)
+.+++.|++++| .++++|. -.++|+.|.+++|..++.+|. .+|++|+.|.+++|..+..+
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~----LP~sLtsL~Lsnc~nLtsLP~-~LP~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV----LPNELTEITIENCNNLTTLPG-SIPEGLEKLTVCHCPEISGL 110 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC----CCCCCcEEEccCCCCcccCCc-hhhhhhhheEccCccccccc
Confidence 455666666665 4555552 133566666666666655553 23455555555555544433
No 38
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.55 E-value=1.1e-09 Score=117.26 Aligned_cols=279 Identities=14% Similarity=0.186 Sum_probs=163.4
Q ss_pred CCcCeEEEccCCCcccccccc-cccCCccceEeecCCCCCcccCCC---CCCCCccEEEEccccCccccccccccccCCC
Q 000692 1010 SNLREITIEDCNALTSLTDGM-IHNNARLEVLRIKGCHSLTSISRG---QLPSSLKAIEINNCQILRCVLDDTEDSCTSS 1085 (1349)
Q Consensus 1010 ~~L~~L~l~~c~~l~~l~~~~-~~~l~~L~~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~ 1085 (1349)
..|+.|.+++|.....-+... ..++|+++.|.+.+|.++++..-. .+.+.|+.+++..|..++...-
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~L--------- 208 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSL--------- 208 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHH---------
Confidence 568999999987665443222 356899999999999988765422 2356788888888877664310
Q ss_pred CCCcchhhcccccccccccccceeeccCCCCCcc--cccccCCCCccceEEEcccCCccc--cccccCccccccceEEec
Q 000692 1086 SSSSSIIQEKSINSTSAYLDLESLCVFNCPSLTC--LSSRYQLPVTLKRLDIQMCSNFMV--LTSECQLPEVLEELKIVS 1161 (1349)
Q Consensus 1086 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~L~~ 1161 (1349)
......+++|++|+++.|+.++. +..-...+..++.+...+|...+. +...-....-+.++++.+
T Consensus 209 -----------k~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~ 277 (483)
T KOG4341|consen 209 -----------KYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQH 277 (483)
T ss_pred -----------HHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhh
Confidence 11234577788888888876653 111234455567776667665431 111112233355556667
Q ss_pred cCCcccccc--cccCCCCcceEEecCCCCCcccc--ccCCCCCCcceEEeecCCCCcccCCC---CCcCcccEEEeccCc
Q 000692 1162 CPKLESIAE--TFFDNARLRSIQIKDCDNLRSIP--KGLHNLSYLHCISIEHCQNLVSFPED---LLPGAIIEFSVQNCA 1234 (1349)
Q Consensus 1162 ~~~l~~~~~--~~~~l~~L~~L~l~~~~~l~~lp--~~~~~l~~L~~L~l~~c~~l~~lp~~---~~~~~L~~L~l~~c~ 1234 (1349)
|..++...- .-..+.+|+.|+.++|..++..+ .-.++.++|+.|.+.+|..++..-.. ...+.|+.+++.+|.
T Consensus 278 c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 278 CNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECG 357 (483)
T ss_pred hccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccc
Confidence 766654321 11245677888888877655432 11345677888888888665443221 122466667776666
Q ss_pred Cccccccc----cccccceeeeccCCCccccCCCC------CccccCceeecCCCCCcccccccccccCccceEEEcCCC
Q 000692 1235 KLKGLRVG----MFNSLQDLLLWQCPGIQFFPEEG------LSANVAYLGISGDNIYKPLVKWGFHKFTSLTALCINGCS 1304 (1349)
Q Consensus 1235 ~l~~l~~~----~~~~L~~L~l~~~~~l~~l~~~~------~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~c~ 1304 (1349)
.+..-... ..+.|+.+.++.|..++.--... -...|..+.+++|+.++...-..+..+++|+.+++.+|.
T Consensus 358 ~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 358 LITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred eehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 55444221 23367777777776655331111 134566677777777644444446666777777777766
Q ss_pred CCcc
Q 000692 1305 DAVS 1308 (1349)
Q Consensus 1305 ~l~~ 1308 (1349)
.++.
T Consensus 438 ~vtk 441 (483)
T KOG4341|consen 438 DVTK 441 (483)
T ss_pred hhhh
Confidence 6544
No 39
>PRK06893 DNA replication initiation factor; Validated
Probab=98.55 E-value=1.4e-06 Score=92.98 Aligned_cols=155 Identities=17% Similarity=0.200 Sum_probs=96.7
Q ss_pred EEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCce
Q 000692 197 RLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKKKY 276 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 276 (1349)
+.+.|+|+.|+|||+||+++++....+ ...+.|+++.... ....+ +.+.++ +.-
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~-~~~~~y~~~~~~~---~~~~~---------------------~~~~~~-~~d 93 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLN-QRTAIYIPLSKSQ---YFSPA---------------------VLENLE-QQD 93 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEeeHHHhh---hhhHH---------------------HHhhcc-cCC
Confidence 568999999999999999999875333 2345666653210 00001 111122 335
Q ss_pred EEEEeCCCCCC-hhhHHH-hhccCCC-CCCCcEEEE-Eecc---------hhHHHhhcCCceEeCCCCChhhHHHHHHHH
Q 000692 277 LIVLDDVWSKS-YDLWQA-LKSPFMV-GAPDSRIIV-TTRS---------VDVALTMGSGGYCELKLLSDDDCWSVFVKH 343 (1349)
Q Consensus 277 LlVlDdv~~~~-~~~~~~-~~~~l~~-~~~gs~ilv-TtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~l~~~~ 343 (1349)
+||+||+|... ...|+. +...+.. ...|..+|| |++. +++..++.....++++++++++.++++++.
T Consensus 94 lLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~ 173 (229)
T PRK06893 94 LVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRN 173 (229)
T ss_pred EEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHH
Confidence 89999998642 244553 2222211 123555554 5543 466667777778999999999999999998
Q ss_pred HhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHHhh
Q 000692 344 AFESRDAGTHENLESIRQKVVEKCKGLPLAARALGGLL 381 (1349)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 381 (1349)
++...-. - -+++.+-|++.+.|..-++..+-..+
T Consensus 174 a~~~~l~-l---~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 174 AYQRGIE-L---SDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHcCCC-C---CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 8643321 1 14566778999988876665554443
No 40
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.51 E-value=1.5e-06 Score=102.01 Aligned_cols=178 Identities=17% Similarity=0.180 Sum_probs=104.1
Q ss_pred ccccchhhHHH---HHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHH
Q 000692 170 AVYGRDEDKAR---VLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVI 246 (1349)
Q Consensus 170 ~~~Gr~~~~~~---l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 246 (1349)
.++|++..+.. +..++.. .....+.++|++|+||||+|+.+++..... | +.++.........+.+
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~-~-----~~l~a~~~~~~~ir~i 80 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGATDAP-F-----EALSAVTSGVKDLREV 80 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHHhCCC-E-----EEEecccccHHHHHHH
Confidence 58888877555 6666643 234578889999999999999998864322 2 2222211111111222
Q ss_pred HHHccCCCCCcCChHHHHHHHHHH-hcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEE--Eecchh--HHHhh-
Q 000692 247 LESITLSPCELKDLNSVQLKLKEA-LFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIV--TTRSVD--VALTM- 320 (1349)
Q Consensus 247 ~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv--TtR~~~--v~~~~- 320 (1349)
.+. .... ..+++.+|++|+++.-.....+.+...+. .|..++| ||.+.. +...+
T Consensus 81 i~~-----------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~ 140 (413)
T PRK13342 81 IEE-----------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALL 140 (413)
T ss_pred HHH-----------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHh
Confidence 221 1111 24678899999998765555666655443 3455554 334322 11111
Q ss_pred cCCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHHh
Q 000692 321 GSGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARALGGL 380 (1349)
Q Consensus 321 ~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~ 380 (1349)
.....+++.+++.++.++++.+.+....... ..-..+..+.|++.|+|.+..+..+...
T Consensus 141 SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 141 SRAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred ccceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 1125789999999999999988653211100 0112455677899999999776554433
No 41
>PTZ00202 tuzin; Provisional
Probab=98.51 E-value=9.5e-06 Score=89.57 Aligned_cols=170 Identities=13% Similarity=0.206 Sum_probs=102.0
Q ss_pred CCCCCCccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHH
Q 000692 164 CLPNEPAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRIS 243 (1349)
Q Consensus 164 ~~~~~~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 243 (1349)
.+++.+.|+||+++++++...|...+. ...+++.|+|++|+|||||++.+..... ...++++.. +..+++
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNpr---g~eElL 326 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDVR---GTEDTL 326 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECCC---CHHHHH
Confidence 344567899999999999999864332 2456999999999999999999886543 113333333 678999
Q ss_pred HHHHHHccCCCCCcC-C-hHHHHHHHHHHh-c-CCceEEEEeCCCCCCh-hhHHHhhccCCCCCCCcEEEEEecchhHHH
Q 000692 244 KVILESITLSPCELK-D-LNSVQLKLKEAL-F-KKKYLIVLDDVWSKSY-DLWQALKSPFMVGAPDSRIIVTTRSVDVAL 318 (1349)
Q Consensus 244 ~~i~~~l~~~~~~~~-~-~~~~~~~l~~~l-~-~~~~LlVlDdv~~~~~-~~~~~~~~~l~~~~~gs~ilvTtR~~~v~~ 318 (1349)
+.++.+|+.+..... + .+.+.+.+.+.- . +++.+||+-==...+. ..+.+. ..+...-.-|+|++----+.+--
T Consensus 327 r~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evpleslt~ 405 (550)
T PTZ00202 327 RSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLESLTI 405 (550)
T ss_pred HHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhhcch
Confidence 999999997433221 1 233333433322 2 6777777643211111 111111 12333334566776443322211
Q ss_pred hhcC---CceEeCCCCChhhHHHHHHHHH
Q 000692 319 TMGS---GGYCELKLLSDDDCWSVFVKHA 344 (1349)
Q Consensus 319 ~~~~---~~~~~l~~L~~~~~~~l~~~~~ 344 (1349)
.... -.-|.++.++.++|.+...+..
T Consensus 406 ~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 406 ANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 1111 1257899999999998876543
No 42
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.49 E-value=1.2e-07 Score=94.23 Aligned_cols=106 Identities=28% Similarity=0.397 Sum_probs=51.7
Q ss_pred CCCcccEEEeccccccccCccccCCCccceEEecCCCCccccccc-ccCCCCcEEEecCccCCCcCc--hhhhccccccE
Q 000692 579 KFKKLRVLSLRRYYITEVPISIGCLRHLRYLNFSDTKIKCLPESV-TSLLNLEILILRDCLHLLKLP--SSIGNLVKLLH 655 (1349)
Q Consensus 579 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i-~~L~~L~~L~l~~~~~~~~lp--~~i~~L~~L~~ 655 (1349)
.+.+|++|+|++|.|+.++ .+..+++|++|++++|.|+.+++.+ ..+++|+.|++++| .+..+- ..+..+++|++
T Consensus 40 ~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp T-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--E
T ss_pred hhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcce
Confidence 5678889999999988885 4778899999999999998887655 46889999999887 444433 34677888999
Q ss_pred EEecCCCccccCcc----ccccCcCCCCCCeeEeCc
Q 000692 656 LDIEGANLLSELPL----RMKELKCLQTLTNFIVSK 687 (1349)
Q Consensus 656 L~l~~~~~~~~~p~----~i~~L~~L~~L~~~~~~~ 687 (1349)
|++.+|. +...+. -+..+++|+.|+...+..
T Consensus 118 L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 118 LSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp EE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred eeccCCc-ccchhhHHHHHHHHcChhheeCCEEccH
Confidence 9999888 344342 267788888887655543
No 43
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.44 E-value=6.2e-08 Score=111.40 Aligned_cols=242 Identities=22% Similarity=0.160 Sum_probs=121.3
Q ss_pred hhccCCCcccEEEecccccc-----ccCccccCCCccceEEecCCCCcc-------cccccccCCCCcEEEecCccCCCc
Q 000692 575 DLLPKFKKLRVLSLRRYYIT-----EVPISIGCLRHLRYLNFSDTKIKC-------LPESVTSLLNLEILILRDCLHLLK 642 (1349)
Q Consensus 575 ~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~Lr~L~Ls~~~i~~-------lp~~i~~L~~L~~L~l~~~~~~~~ 642 (1349)
..|..+..|++|+++++.++ .++..+...+.|++|+++++.+.. ++..+.++.+|+.|++++|.....
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 34556666777777777763 345556666777777777776552 234556677777777777754445
Q ss_pred Cchhhhcccc---ccEEEecCCCccc----cCccccccC-cCCCCCCeeEeCcCCccCcccccccccCCceEEEcCCcCC
Q 000692 643 LPSSIGNLVK---LLHLDIEGANLLS----ELPLRMKEL-KCLQTLTNFIVSKGSGCTLKDLKNWKFLRGRLCISGLENV 714 (1349)
Q Consensus 643 lp~~i~~L~~---L~~L~l~~~~~~~----~~p~~i~~L-~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~ 714 (1349)
.+..+..+.+ |++|++++|.... .+...+..+ ++|+.|....... .
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l--------------------------~ 150 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRL--------------------------E 150 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcC--------------------------C
Confidence 5555655555 7777777776321 111223333 4444442211100 0
Q ss_pred CChhhhhHhhccCCCCCCeEEEEecCCCCCccchHHHHHHhhcCCCCCCCCcEEEeeeCCCC-----CCcccCCCCCCCe
Q 000692 715 INSQEANEAMLREKKGLKFLQLEWGAELDDSRDKAREMNILDMLQPHRNVKGLAVNFYGGAK-----FPSWVGDPSFSNI 789 (1349)
Q Consensus 715 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-----~p~~~~~~~l~~L 789 (1349)
..........+..+.+|+.|+++++..... ....+...+...++|+.|+++++.... ++..+. .+++|
T Consensus 151 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-----~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~--~~~~L 223 (319)
T cd00116 151 GASCEALAKALRANRDLKELNLANNGIGDA-----GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLA--SLKSL 223 (319)
T ss_pred chHHHHHHHHHHhCCCcCEEECcCCCCchH-----HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhc--ccCCC
Confidence 001111223344555666666665432110 111122233334566777776654431 112221 35678
Q ss_pred eEEEEecCCCCC-CCCCCC-----CcCCCceeeecCCCCceEeCccccCCCCccCCCCcceEeccCcc
Q 000692 790 VFLILQNCKRCT-SLPTLG-----QLCSLKDLTIVGMSGLRSVGSEIYGEGSSKPFESLQSLYFEDLQ 851 (1349)
Q Consensus 790 ~~L~L~~~~~~~-~l~~l~-----~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~ 851 (1349)
+.|++++|.... .+..+. ..+.|+.|++++|. ++......... ....+++|+.+++.++.
T Consensus 224 ~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~-~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 224 EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAE-VLAEKESLLELDLRGNK 289 (319)
T ss_pred CEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHH-HHhcCCCccEEECCCCC
Confidence 888887775322 111111 23678888887753 22111100000 00235778888877654
No 44
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.44 E-value=5e-07 Score=87.87 Aligned_cols=116 Identities=21% Similarity=0.279 Sum_probs=81.2
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcc----cCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHh
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVED----FDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEAL 271 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 271 (1349)
.+++.|+|.+|+|||+++++++.+..... -..++|+.+....+...+...+++.++.......+..++.+.+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 47899999999999999999988653210 23567999988889999999999999877665556777777888877
Q ss_pred cCCc-eEEEEeCCCCC-ChhhHHHhhccCCCCCCCcEEEEEecc
Q 000692 272 FKKK-YLIVLDDVWSK-SYDLWQALKSPFMVGAPDSRIIVTTRS 313 (1349)
Q Consensus 272 ~~~~-~LlVlDdv~~~-~~~~~~~~~~~l~~~~~gs~ilvTtR~ 313 (1349)
...+ .+||+|++..- ....++.+.... . ..+.+||++.+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~-~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLL-N-ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHT-C-SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHH-h-CCCCeEEEEECh
Confidence 6655 59999999554 333344443322 2 567788887765
No 45
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.43 E-value=7.6e-06 Score=88.78 Aligned_cols=203 Identities=20% Similarity=0.203 Sum_probs=115.7
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcC
Q 000692 194 SSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFK 273 (1349)
Q Consensus 194 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 273 (1349)
+.+.-..+||++|+||||||+.++...... | ..++...+-..-++.+++... +....+
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~~~~~~-f-----~~~sAv~~gvkdlr~i~e~a~----------------~~~~~g 103 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAGTTNAA-F-----EALSAVTSGVKDLREIIEEAR----------------KNRLLG 103 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHhhCCc-e-----EEeccccccHHHHHHHHHHHH----------------HHHhcC
Confidence 345677899999999999999998864432 2 333333322222233332211 222348
Q ss_pred CceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEE--EecchhHH--H-hhcCCceEeCCCCChhhHHHHHHHHHhcCC
Q 000692 274 KKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIV--TTRSVDVA--L-TMGSGGYCELKLLSDDDCWSVFVKHAFESR 348 (1349)
Q Consensus 274 ~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv--TtR~~~v~--~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~ 348 (1349)
++.+|++|.|..-+..+-+.+ +|....|.-|+| ||.++... . ...-..++.+++|+.++-.+++.+.+....
T Consensus 104 r~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~ 180 (436)
T COG2256 104 RRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEE 180 (436)
T ss_pred CceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhh
Confidence 999999999976544444444 344467777776 56654322 1 122335899999999999999988442211
Q ss_pred C-CC-Cch-hHHHHHHHHHHHhCCChHHHHH---HHHhhccCC---ChHHHHHHHhhcccccCCC-C---CchHHHHHhh
Q 000692 349 D-AG-THE-NLESIRQKVVEKCKGLPLAARA---LGGLLRSRQ---RFVEWDDILDSKIWDLHDE-I---EIPSVLKLSY 415 (1349)
Q Consensus 349 ~-~~-~~~-~~~~~~~~i~~~~~g~PLal~~---~~~~l~~~~---~~~~w~~~~~~~~~~~~~~-~---~~~~~l~~sy 415 (1349)
. .. ... --++....+++.++|---++-. ++..+.... ..+..++++++.......+ + ++..+|.-|.
T Consensus 181 rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSv 260 (436)
T COG2256 181 RGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSARFDKDGDAHYDLISALHKSV 260 (436)
T ss_pred cCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhh
Confidence 1 11 011 1134556789999997544322 222222221 2455566666543332222 1 5667777777
Q ss_pred cCCCHH
Q 000692 416 HHLPSH 421 (1349)
Q Consensus 416 ~~L~~~ 421 (1349)
..=+++
T Consensus 261 RGSD~d 266 (436)
T COG2256 261 RGSDPD 266 (436)
T ss_pred ccCCcC
Confidence 655444
No 46
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.43 E-value=2.9e-06 Score=91.61 Aligned_cols=172 Identities=17% Similarity=0.141 Sum_probs=101.2
Q ss_pred chhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCC
Q 000692 174 RDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLS 253 (1349)
Q Consensus 174 r~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 253 (1349)
.+..++++..++.. ...+.|.|+|..|+|||++|+.+++..... ....++++++.-.... ..
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~~~~~-~~~~~~i~~~~~~~~~---~~-------- 83 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAAAEER-GKSAIYLPLAELAQAD---PE-------- 83 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHHHhc-CCcEEEEeHHHHHHhH---HH--------
Confidence 44566777776532 234688999999999999999998764322 3345566544322100 01
Q ss_pred CCCcCChHHHHHHHHHHhcCCceEEEEeCCCCCChh-hH-HHhhccCCC-CCCCcEEEEEecchh---------HHHhhc
Q 000692 254 PCELKDLNSVQLKLKEALFKKKYLIVLDDVWSKSYD-LW-QALKSPFMV-GAPDSRIIVTTRSVD---------VALTMG 321 (1349)
Q Consensus 254 ~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~-~~-~~~~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~ 321 (1349)
+.+.+.+ .-+||+||++.-... .| ..+...+.. ...+.++|+|++... +...+.
T Consensus 84 -------------~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~ 149 (226)
T TIGR03420 84 -------------VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLA 149 (226)
T ss_pred -------------HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHh
Confidence 1111222 348999999653321 23 233332221 123457888887432 222333
Q ss_pred CCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHHhh
Q 000692 322 SGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARALGGLL 381 (1349)
Q Consensus 322 ~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 381 (1349)
....+++.++++++...++...+......- -.+..+.+++.+.|.|..+..+...+
T Consensus 150 ~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~----~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 150 WGLVFQLPPLSDEEKIAALQSRAARRGLQL----PDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred cCeeEecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 345789999999999999987653222111 13445677888999998887665443
No 47
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.42 E-value=1.3e-08 Score=113.41 Aligned_cols=173 Identities=25% Similarity=0.334 Sum_probs=121.4
Q ss_pred ccCCCcccEEEeccccccccCccccCCCccceEEecCCCCcccccccccCCCCcEEEecCccCCCcCchhhhccccccEE
Q 000692 577 LPKFKKLRVLSLRRYYITEVPISIGCLRHLRYLNFSDTKIKCLPESVTSLLNLEILILRDCLHLLKLPSSIGNLVKLLHL 656 (1349)
Q Consensus 577 ~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L 656 (1349)
+..+..|..|.|..|.+..+|..+++|..|.||||+.|++..+|..++.|. |++|-+++| .++.+|..|+.+.+|.+|
T Consensus 94 ~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~l 171 (722)
T KOG0532|consen 94 ACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHL 171 (722)
T ss_pred HHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHh
Confidence 445667778888888888888888888888888888888888888888775 888888887 788888888888888888
Q ss_pred EecCCCccccCccccccCcCCCCCCeeEeCcCCccCcccccccccCCceEEEcCCcCCCChhhhhHhhccCCCCCCeEEE
Q 000692 657 DIEGANLLSELPLRMKELKCLQTLTNFIVSKGSGCTLKDLKNWKFLRGRLCISGLENVINSQEANEAMLREKKGLKFLQL 736 (1349)
Q Consensus 657 ~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 736 (1349)
|.+.|. +..+|..++.|.+|+.|..... ++
T Consensus 172 d~s~ne-i~slpsql~~l~slr~l~vrRn------------------------~l------------------------- 201 (722)
T KOG0532|consen 172 DVSKNE-IQSLPSQLGYLTSLRDLNVRRN------------------------HL------------------------- 201 (722)
T ss_pred hhhhhh-hhhchHHhhhHHHHHHHHHhhh------------------------hh-------------------------
Confidence 888887 7778888888877777632100 00
Q ss_pred EecCCCCCccchHHHHHHhhcCCCCCCCCcEEEeeeCCCCCCcccCCCCCCCeeEEEEecCCCCCCCC-C---CCCcCCC
Q 000692 737 EWGAELDDSRDKAREMNILDMLQPHRNVKGLAVNFYGGAKFPSWVGDPSFSNIVFLILQNCKRCTSLP-T---LGQLCSL 812 (1349)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~---l~~l~~L 812 (1349)
..+++.+. .-.|.+|+++.|+...+|-.+. .++.|++|.|.+|... ..| . -|..---
T Consensus 202 ---------------~~lp~El~-~LpLi~lDfScNkis~iPv~fr--~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIF 262 (722)
T KOG0532|consen 202 ---------------EDLPEELC-SLPLIRLDFSCNKISYLPVDFR--KMRHLQVLQLENNPLQ-SPPAQICEKGKVHIF 262 (722)
T ss_pred ---------------hhCCHHHh-CCceeeeecccCceeecchhhh--hhhhheeeeeccCCCC-CChHHHHhccceeee
Confidence 01111111 1235667777777777886665 5788888888888543 333 2 2344445
Q ss_pred ceeeecCC
Q 000692 813 KDLTIVGM 820 (1349)
Q Consensus 813 ~~L~l~~~ 820 (1349)
|+|++.-|
T Consensus 263 KyL~~qA~ 270 (722)
T KOG0532|consen 263 KYLSTQAC 270 (722)
T ss_pred eeecchhc
Confidence 56666655
No 48
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.42 E-value=1.6e-05 Score=94.74 Aligned_cols=195 Identities=16% Similarity=0.148 Sum_probs=112.6
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-cCceEEEEecccccHHHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-FDPKAWVCVSDDFDVLRISKVIL 247 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~ 247 (1349)
..++|.+..++.|..++... .-.+.+.++|..|+||||+|+.+++...-.. ++. .....-...+.|.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~g-----RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~-------~PCG~C~sCr~I~ 83 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGG-----RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS-------QPCGVCRACREID 83 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC-------CCCcccHHHHHHh
Confidence 46899999999999998532 2345678999999999999998877543111 100 0000001111111
Q ss_pred HH-----ccCCCCCcCChHHHHHHHHHH----hcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecch-hHH
Q 000692 248 ES-----ITLSPCELKDLNSVQLKLKEA----LFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRSV-DVA 317 (1349)
Q Consensus 248 ~~-----l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~-~v~ 317 (1349)
.. +.........+++..+.+... ..++.-++|+|+++.-+...|..+...+-.-....++|+||.+. .+.
T Consensus 84 ~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp 163 (830)
T PRK07003 84 EGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIP 163 (830)
T ss_pred cCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhcc
Confidence 10 000000011122221111111 13455688999997776677888777665545577877777764 332
Q ss_pred HhhcC-CceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCCh-HHHHHHHH
Q 000692 318 LTMGS-GGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLP-LAARALGG 379 (1349)
Q Consensus 318 ~~~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~~~ 379 (1349)
..+.. -..++++.++.++..+.+.+.+...+...+ .+....|++.++|.. -|+..+-.
T Consensus 164 ~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id----~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 164 VTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFE----PQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred chhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 22211 146899999999999999887743322211 344567899999865 45555433
No 49
>PRK04195 replication factor C large subunit; Provisional
Probab=98.42 E-value=2.4e-05 Score=93.80 Aligned_cols=247 Identities=16% Similarity=0.138 Sum_probs=140.2
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILE 248 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 248 (1349)
..++|++..++++..|+..... +...+.+.|+|++|+||||+|+.++++.. |+ ++-+++++..+.. ....++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el~---~~-~ielnasd~r~~~-~i~~~i~ 86 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDYG---WE-VIELNASDQRTAD-VIERVAG 86 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHcC---CC-EEEEcccccccHH-HHHHHHH
Confidence 4599999999999999865332 12267899999999999999999998753 33 2333444433222 2223322
Q ss_pred HccCCCCCcCChHHHHHHHHHHhcCCceEEEEeCCCCCCh----hhHHHhhccCCCCCCCcEEEEEecch-hHHH-hh-c
Q 000692 249 SITLSPCELKDLNSVQLKLKEALFKKKYLIVLDDVWSKSY----DLWQALKSPFMVGAPDSRIIVTTRSV-DVAL-TM-G 321 (1349)
Q Consensus 249 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----~~~~~~~~~l~~~~~gs~ilvTtR~~-~v~~-~~-~ 321 (1349)
...... .....++-+||+|+++.-.. ..+..+...+.. .+..||+|+.+. .... .+ .
T Consensus 87 ~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrs 150 (482)
T PRK04195 87 EAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRN 150 (482)
T ss_pred HhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhc
Confidence 211100 01113678999999965321 234455444432 334566666432 1111 11 1
Q ss_pred CCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHHhhccCC---ChHHHHHHHhhcc
Q 000692 322 SGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARALGGLLRSRQ---RFVEWDDILDSKI 398 (1349)
Q Consensus 322 ~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~---~~~~w~~~~~~~~ 398 (1349)
....+++.+++.++....+.+.+...+...+ .+....|++.++|..-.+......+.... +.+....+...
T Consensus 151 r~~~I~f~~~~~~~i~~~L~~i~~~egi~i~----~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~~-- 224 (482)
T PRK04195 151 ACLMIEFKRLSTRSIVPVLKRICRKEGIECD----DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGRR-- 224 (482)
T ss_pred cceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhcC--
Confidence 2346899999999999998887754333222 34567789999998766654444443321 12222222211
Q ss_pred cccCCCCCchHHHHHhhc-CCCHHHhHHHHHhccCCCCcccchHHHHHHHHHcCCCCC
Q 000692 399 WDLHDEIEIPSVLKLSYH-HLPSHLKRCFAYCAILPKDYEFEEEELVLLWIAEGLIQP 455 (1349)
Q Consensus 399 ~~~~~~~~~~~~l~~sy~-~L~~~~k~cf~~~~~fp~~~~i~~~~li~~wia~g~i~~ 455 (1349)
....+++.++..-+. .-+......+..+ .++. ..+-.|+.|.+...
T Consensus 225 ---d~~~~if~~l~~i~~~k~~~~a~~~~~~~-------~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 225 ---DREESIFDALDAVFKARNADQALEASYDV-------DEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred ---CCCCCHHHHHHHHHCCCCHHHHHHHHHcc-------cCCH-HHHHHHHHhccccc
Confidence 112256777776655 3333343333222 2233 35778999999754
No 50
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=1.9e-05 Score=93.15 Aligned_cols=192 Identities=15% Similarity=0.111 Sum_probs=111.0
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILE 248 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 248 (1349)
..++|.+...+.+..++.... -...+.++|+.|+||||+|+.+++...... |+.. .....-...+.+..
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~-----~~~~-~pCg~C~sC~~I~~ 83 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCET-----GVTS-TPCEVCATCKAVNE 83 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCc-----CCCC-CCCccCHHHHHHhc
Confidence 468999999999999986432 346889999999999999999887542111 1000 00000111111111
Q ss_pred HccC-----CCCCcCChHHH---HHHHH-HHhcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecch-hHHH
Q 000692 249 SITL-----SPCELKDLNSV---QLKLK-EALFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRSV-DVAL 318 (1349)
Q Consensus 249 ~l~~-----~~~~~~~~~~~---~~~l~-~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~-~v~~ 318 (1349)
.-.. ........++. ...+. .-..+++-++|+|+|..-+...+..+...+-....+.++|++|.+. .+..
T Consensus 84 g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~ 163 (702)
T PRK14960 84 GRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPI 163 (702)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhH
Confidence 0000 00000112221 11111 1123566799999997766566777776665544566777777653 2322
Q ss_pred hh-cCCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHH
Q 000692 319 TM-GSGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAAR 375 (1349)
Q Consensus 319 ~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 375 (1349)
.+ .....+++++++.++..+.+.+.+...+...+ .+....|++.++|.+-.+.
T Consensus 164 TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id----~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 164 TVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD----QDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 21 22247899999999999999887744332222 3445678999999875443
No 51
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=1.2e-05 Score=92.52 Aligned_cols=189 Identities=15% Similarity=0.158 Sum_probs=108.1
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-cCceEEEEecccccHHHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-FDPKAWVCVSDDFDVLRISKVIL 247 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~ 247 (1349)
..++|.+..++.+...+... .-...+.++|+.|+||||+|+.+++...... +.. .+.......+++.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~-----~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~-------~pc~~c~~c~~~~ 83 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLG-----RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS-------NPCRKCIICKEIE 83 (363)
T ss_pred hhccChHHHHHHHHHHHHcC-----CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCCCHHHHHHh
Confidence 45889999999998888542 2346788999999999999999987643110 100 0000000011111
Q ss_pred HHccC-----CCCCcCChHHHHHHHHHHh-----cCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecch-hH
Q 000692 248 ESITL-----SPCELKDLNSVQLKLKEAL-----FKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRSV-DV 316 (1349)
Q Consensus 248 ~~l~~-----~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~-~v 316 (1349)
..... ........++. +.+.+.+ .+++-++|+|++..-....+..+...+.......++|++|.+. .+
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~i-r~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l 162 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEM-REILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKI 162 (363)
T ss_pred cCCCCceEEecccccCCHHHH-HHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhh
Confidence 10000 00000111111 1111111 2455699999997666556777776665544566677666543 33
Q ss_pred HHhhc-CCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHH
Q 000692 317 ALTMG-SGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAA 374 (1349)
Q Consensus 317 ~~~~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 374 (1349)
...+. ....+++++++.++..+.+.+.+...+..-+ .+.++.|++.++|.|-.+
T Consensus 163 ~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~----~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 163 PKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTD----EYALKLIAYHAHGSMRDA 217 (363)
T ss_pred hHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 32222 1247899999999999988877643322111 344567899999988544
No 52
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.38 E-value=1.3e-05 Score=101.58 Aligned_cols=309 Identities=16% Similarity=0.162 Sum_probs=173.2
Q ss_pred cccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCc-c-cCceEEEEecccc---cHHHHHHH
Q 000692 171 VYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVE-D-FDPKAWVCVSDDF---DVLRISKV 245 (1349)
Q Consensus 171 ~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~-~-f~~~~wv~~~~~~---~~~~~~~~ 245 (1349)
++||+.+++.+...+..... ....++.+.|..|||||+++++|......+ + |-...+-...... ...+.+++
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~---g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSK---GRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCchHhHHHHHHHHHHHHhC---CCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHH
Confidence 78999999999999976543 455699999999999999999998765432 1 2111111111111 12233344
Q ss_pred HHHHcc-------------------CCCCC----------------------cCChHH-----HHHHHHHHh-cCCceEE
Q 000692 246 ILESIT-------------------LSPCE----------------------LKDLNS-----VQLKLKEAL-FKKKYLI 278 (1349)
Q Consensus 246 i~~~l~-------------------~~~~~----------------------~~~~~~-----~~~~l~~~l-~~~~~Ll 278 (1349)
+..++. ..... ....+. .+..+.... +.++.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 444331 11000 000011 111222222 3569999
Q ss_pred EEeCCCCCChhhHHHh---hccCCC---CCCCcEEEEEecch--hHHHhhcCCceEeCCCCChhhHHHHHHHHHhcCCCC
Q 000692 279 VLDDVWSKSYDLWQAL---KSPFMV---GAPDSRIIVTTRSV--DVALTMGSGGYCELKLLSDDDCWSVFVKHAFESRDA 350 (1349)
Q Consensus 279 VlDdv~~~~~~~~~~~---~~~l~~---~~~gs~ilvTtR~~--~v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~ 350 (1349)
|+||+.-.+....+-+ ...... .....-.+.|.+.. .+.........+.+.||+..+...+..........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~- 237 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL- 237 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc-
Confidence 9999954443333322 222210 00112223333332 22222233357999999999999999877733222
Q ss_pred CCchhHHHHHHHHHHHhCCChHHHHHHHHhhccCC------ChHHHHHHHhhcccccCCCCCchHHHHHhhcCCCHHHhH
Q 000692 351 GTHENLESIRQKVVEKCKGLPLAARALGGLLRSRQ------RFVEWDDILDSKIWDLHDEIEIPSVLKLSYHHLPSHLKR 424 (1349)
Q Consensus 351 ~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~------~~~~w~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~ 424 (1349)
...+....|+++..|+|+-+..+-..+.... +...|..=... .......+.+...+..-.+.||...|+
T Consensus 238 ----~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~-i~~~~~~~~vv~~l~~rl~kL~~~t~~ 312 (849)
T COG3899 238 ----LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS-LGILATTDAVVEFLAARLQKLPGTTRE 312 (849)
T ss_pred ----ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh-cCCchhhHHHHHHHHHHHhcCCHHHHH
Confidence 2245667789999999999999998887742 23334322111 111111113455688899999999999
Q ss_pred HHHHhccCCCCcccchHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHHHhCcCcccc-----CCCCcc--c-chhhHHH
Q 000692 425 CFAYCAILPKDYEFEEEELVLLWIAEGLIQPSKDSKQLEDLSSEYFRDLLSRSMLQKS-----SSSEYK--Y-VMHDLVH 496 (1349)
Q Consensus 425 cf~~~~~fp~~~~i~~~~li~~wia~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~-----~~~~~~--~-~~h~lv~ 496 (1349)
.+...|++-.. ++.+.|...|-. ...+++....+.|....++-.. ...... | -.||.++
T Consensus 313 Vl~~AA~iG~~--F~l~~La~l~~~-----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vq 379 (849)
T COG3899 313 VLKAAACIGNR--FDLDTLAALAED-----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQ 379 (849)
T ss_pred HHHHHHHhCcc--CCHHHHHHHHhh-----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHH
Confidence 99999999654 456666655521 2234455555555544444311 111111 2 4688888
Q ss_pred HHhhh
Q 000692 497 DLAQW 501 (1349)
Q Consensus 497 ~~~~~ 501 (1349)
+.|-.
T Consensus 380 qaaY~ 384 (849)
T COG3899 380 QAAYN 384 (849)
T ss_pred HHHhc
Confidence 88754
No 53
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.37 E-value=1.9e-07 Score=110.39 Aligned_cols=103 Identities=37% Similarity=0.556 Sum_probs=91.7
Q ss_pred ccCCCcccEEEeccccccccCccccCCC-ccceEEecCCCCcccccccccCCCCcEEEecCccCCCcCchhhhccccccE
Q 000692 577 LPKFKKLRVLSLRRYYITEVPISIGCLR-HLRYLNFSDTKIKCLPESVTSLLNLEILILRDCLHLLKLPSSIGNLVKLLH 655 (1349)
Q Consensus 577 ~~~l~~Lr~L~L~~~~i~~lp~~i~~L~-~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~ 655 (1349)
+..++.++.|++.++.++.+|...+.+. +|++|++++|.+..+|..++.+++|+.|++++| .+..+|...+.+++|+.
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhh
Confidence 3455789999999999999999898885 999999999999999988999999999999998 88999988889999999
Q ss_pred EEecCCCccccCccccccCcCCCCCC
Q 000692 656 LDIEGANLLSELPLRMKELKCLQTLT 681 (1349)
Q Consensus 656 L~l~~~~~~~~~p~~i~~L~~L~~L~ 681 (1349)
|++++|. +..+|..++.+..|++|.
T Consensus 191 L~ls~N~-i~~l~~~~~~~~~L~~l~ 215 (394)
T COG4886 191 LDLSGNK-ISDLPPEIELLSALEELD 215 (394)
T ss_pred eeccCCc-cccCchhhhhhhhhhhhh
Confidence 9999998 888888776666677774
No 54
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.35 E-value=6.8e-06 Score=83.30 Aligned_cols=182 Identities=19% Similarity=0.195 Sum_probs=96.3
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILE 248 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 248 (1349)
..|+|.+.-++.+.-++..... .+.....+.+||++|+||||||.-+++..... | .+.+...-....++ ..++.
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~-~---~~~sg~~i~k~~dl-~~il~ 97 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANELGVN-F---KITSGPAIEKAGDL-AAILT 97 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHHCT---E---EEEECCC--SCHHH-HHHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhccCCC-e---EeccchhhhhHHHH-HHHHH
Confidence 5699999988887666543322 23457788999999999999999999986543 3 12222111011111 11111
Q ss_pred HccCCCCCcCChHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHHhhccCC--------CCC-----------CCcEEEE
Q 000692 249 SITLSPCELKDLNSVQLKLKEALFKKKYLIVLDDVWSKSYDLWQALKSPFM--------VGA-----------PDSRIIV 309 (1349)
Q Consensus 249 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~--------~~~-----------~gs~ilv 309 (1349)
. + +++-+|.+|++..-...+-+.+..+.- ..+ +=+-|=.
T Consensus 98 ~---------------------l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligA 155 (233)
T PF05496_consen 98 N---------------------L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGA 155 (233)
T ss_dssp T------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEE
T ss_pred h---------------------c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeee
Confidence 1 1 245577778886544333222222111 111 1223446
Q ss_pred EecchhHHHhhcCCc--eEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHHhhc
Q 000692 310 TTRSVDVALTMGSGG--YCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARALGGLLR 382 (1349)
Q Consensus 310 TtR~~~v~~~~~~~~--~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~ 382 (1349)
|||...+...+.... ..+++..+.+|-.++..+.+..-.. +-.++.+.+|++++.|-|--+.-+-..++
T Consensus 156 TTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i----~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 156 TTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI----EIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp ESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 888765554444332 4589999999999999877633222 22356778999999999966555544443
No 55
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.35 E-value=1.5e-06 Score=94.89 Aligned_cols=291 Identities=19% Similarity=0.191 Sum_probs=180.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCCCCccc-CceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcC
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDKSVEDF-DPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFK 273 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 273 (1349)
..+-+.++|.|||||||++-.+.+ .... | +.+.++....-.+...+.-.....++...... +.....+.....+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~-~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g---~~~~~~~~~~~~~ 87 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASE-YADGVAFVDLAPITDPALVFPTLAGALGLHVQPG---DSAVDTLVRRIGD 87 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hhhh-cccceeeeeccccCchhHhHHHHHhhcccccccc---hHHHHHHHHHHhh
Confidence 357899999999999999999988 3322 5 56666766666666666666666666543321 2233345556678
Q ss_pred CceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecchhHHHhhcCCceEeCCCCChh-hHHHHHHHHHhcCCCC-C
Q 000692 274 KKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRSVDVALTMGSGGYCELKLLSDD-DCWSVFVKHAFESRDA-G 351 (1349)
Q Consensus 274 ~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~l~~~~~~~~~~~-~ 351 (1349)
+|.++|+||-.+. .+.-......+..+.+.-.++.|+|..-. ..+.....+.+|+.. ++.++|...+...... .
T Consensus 88 rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~ 163 (414)
T COG3903 88 RRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFW 163 (414)
T ss_pred hhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhcccee
Confidence 9999999998322 12223344455555667778899986432 234456778888875 7899988766322111 1
Q ss_pred CchhHHHHHHHHHHHhCCChHHHHHHHHhhccCCCh-------HHHHHHHhhcccccCCCCCchHHHHHhhcCCCHHHhH
Q 000692 352 THENLESIRQKVVEKCKGLPLAARALGGLLRSRQRF-------VEWDDILDSKIWDLHDEIEIPSVLKLSYHHLPSHLKR 424 (1349)
Q Consensus 352 ~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~-------~~w~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~ 424 (1349)
-.........+|.++.+|.|++|..+++..+.-... +.|...-+.............+.+.+||.-|..-.+-
T Consensus 164 l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~ 243 (414)
T COG3903 164 LTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERA 243 (414)
T ss_pred ecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHH
Confidence 112235566889999999999999999998876421 1222221111111111114667899999999999999
Q ss_pred HHHHhccCCCCcccchHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHHHhCcCccccC-CCCcccchhhHHHHHhhhcc
Q 000692 425 CFAYCAILPKDYEFEEEELVLLWIAEGLIQPSKDSKQLEDLSSEYFRDLLSRSMLQKSS-SSEYKYVMHDLVHDLAQWAS 503 (1349)
Q Consensus 425 cf~~~~~fp~~~~i~~~~li~~wia~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~-~~~~~~~~h~lv~~~~~~~~ 503 (1349)
-|--++.|...+.-. ...|.+-|-..- ........-+..+++++++.... .+...|+.-+-++.|+..+-
T Consensus 244 ~~~rLa~~~g~f~~~----l~~~~a~g~~~~-----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL 314 (414)
T COG3903 244 LFGRLAVFVGGFDLG----LALAVAAGADVD-----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAEL 314 (414)
T ss_pred Hhcchhhhhhhhccc----HHHHHhcCCccc-----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999998776554 334544432210 01122333355678888775433 12334566666666655443
No 56
>PF13173 AAA_14: AAA domain
Probab=98.32 E-value=2.5e-06 Score=81.96 Aligned_cols=119 Identities=22% Similarity=0.224 Sum_probs=79.2
Q ss_pred EEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCce
Q 000692 197 RLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKKKY 276 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 276 (1349)
+++.|.|+-|+||||++++++++.. ....+++++..+.........+ ..+.+.+....++.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~--~~~~~~yi~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~ 63 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL--PPENILYINFDDPRDRRLADPD-----------------LLEYFLELIKPGKK 63 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc--ccccceeeccCCHHHHHHhhhh-----------------hHHHHHHhhccCCc
Confidence 6899999999999999999987654 2345677776655432111000 22233333344788
Q ss_pred EEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecchhHHHh-h-----cCCceEeCCCCChhhH
Q 000692 277 LIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRSVDVALT-M-----GSGGYCELKLLSDDDC 336 (1349)
Q Consensus 277 LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~~v~~~-~-----~~~~~~~l~~L~~~~~ 336 (1349)
+|++|++... ..|......+.+..+..+|++|+........ . +....++|.||+-.|.
T Consensus 64 ~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 64 YIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred EEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 9999999554 5687777777665567899999998665532 1 1113578999987763
No 57
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.5e-07 Score=101.95 Aligned_cols=202 Identities=17% Similarity=0.184 Sum_probs=110.1
Q ss_pred ccCCcceEEeecCCCccccCC---cCCCCCcCeEEEccCCCcccccc--cccccCCccceEeecCCCCCcccCC--CCCC
Q 000692 985 SLTSLKDLLIGNCPTLVSLPK---ACFLSNLREITIEDCNALTSLTD--GMIHNNARLEVLRIKGCHSLTSISR--GQLP 1057 (1349)
Q Consensus 985 ~l~~L~~L~l~~~~~l~~~~~---~~~l~~L~~L~l~~c~~l~~l~~--~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~ 1057 (1349)
++.+|+.+.+.+|+ ....+. ...+++++.|+++. |-+..+.. .....+|+|+.|+|+.|........ ....
T Consensus 119 n~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~-NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 119 NLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSR-NLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hHHhhhheeecCcc-ccccchhhhhhhCCcceeecchh-hhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 44555555554433 222221 14566666666666 44443321 1134567777777776533221111 1124
Q ss_pred CCccEEEEccccCccccccccccccCCCCCCcchhhcccccccccccccceeeccCCCCCcccccccCCCCccceEEEcc
Q 000692 1058 SSLKAIEINNCQILRCVLDDTEDSCTSSSSSSSIIQEKSINSTSAYLDLESLCVFNCPSLTCLSSRYQLPVTLKRLDIQM 1137 (1349)
Q Consensus 1058 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~ 1137 (1349)
++|+.|.++.|.-- ..........||+|+.|++..|..+.........+..|++|+|++
T Consensus 197 ~~lK~L~l~~CGls---------------------~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~ 255 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLS---------------------WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSN 255 (505)
T ss_pred hhhheEEeccCCCC---------------------HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccC
Confidence 56777777777521 111122345677788888888754443333455667788888888
Q ss_pred cCCcccc-ccccCccccccceEEeccCCcc-ccccc-----ccCCCCcceEEecCCCCCcccc--ccCCCCCCcceEEee
Q 000692 1138 CSNFMVL-TSECQLPEVLEELKIVSCPKLE-SIAET-----FFDNARLRSIQIKDCDNLRSIP--KGLHNLSYLHCISIE 1208 (1349)
Q Consensus 1138 ~~~l~~~-~~~~~~~~~L~~L~L~~~~~l~-~~~~~-----~~~l~~L~~L~l~~~~~l~~lp--~~~~~l~~L~~L~l~ 1208 (1349)
|+.+... ....+.++.|+.|+++.|..-. .+|+. ...+++|+.|++..|+ +...+ ..+..+++|+.|.+.
T Consensus 256 N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 256 NNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred CcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc-cccccccchhhccchhhhhhcc
Confidence 7766533 2345667777777777753222 12222 2356888888888885 33332 234556666766655
Q ss_pred cC
Q 000692 1209 HC 1210 (1349)
Q Consensus 1209 ~c 1210 (1349)
.+
T Consensus 335 ~n 336 (505)
T KOG3207|consen 335 LN 336 (505)
T ss_pred cc
Confidence 44
No 58
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.30 E-value=5.8e-07 Score=89.47 Aligned_cols=85 Identities=28% Similarity=0.419 Sum_probs=31.2
Q ss_pred CCCcccEEEeccccccccCcccc-CCCccceEEecCCCCcccccccccCCCCcEEEecCccCCCcCchhh-hccccccEE
Q 000692 579 KFKKLRVLSLRRYYITEVPISIG-CLRHLRYLNFSDTKIKCLPESVTSLLNLEILILRDCLHLLKLPSSI-GNLVKLLHL 656 (1349)
Q Consensus 579 ~l~~Lr~L~L~~~~i~~lp~~i~-~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i-~~L~~L~~L 656 (1349)
+..++|.|+|++|.|+.+. .++ .+.+|+.|+|++|.|+.++ .+..|++|++|++++| .+..++..+ ..+++|++|
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcCCEE
Confidence 4457899999999999884 465 6899999999999999996 5889999999999998 778887666 469999999
Q ss_pred EecCCCccccC
Q 000692 657 DIEGANLLSEL 667 (1349)
Q Consensus 657 ~l~~~~~~~~~ 667 (1349)
++++|. +..+
T Consensus 94 ~L~~N~-I~~l 103 (175)
T PF14580_consen 94 YLSNNK-ISDL 103 (175)
T ss_dssp E-TTS----SC
T ss_pred ECcCCc-CCCh
Confidence 999998 4444
No 59
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.29 E-value=1.8e-05 Score=91.51 Aligned_cols=198 Identities=18% Similarity=0.100 Sum_probs=108.3
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccC-ceEEEEecccccH-HHHHH--
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFD-PKAWVCVSDDFDV-LRISK-- 244 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~-~~~wv~~~~~~~~-~~~~~-- 244 (1349)
..++|++..++.+..++... ..+.+.++|+.|+||||+|+.+++......+. ..+.+++++..+. .....
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 88 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVED 88 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcC
Confidence 45889999999998888532 23467899999999999999988765422222 2344444331100 00000
Q ss_pred -HHHHHccCC-CCCcCChHHHHHHHHHHh-----cCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecch-hH
Q 000692 245 -VILESITLS-PCELKDLNSVQLKLKEAL-----FKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRSV-DV 316 (1349)
Q Consensus 245 -~i~~~l~~~-~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~-~v 316 (1349)
.....++.. .......+.....++... .+.+-+||+||+..-.......+...+......+++|+|+... .+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~ 168 (337)
T PRK12402 89 PRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKL 168 (337)
T ss_pred cchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhC
Confidence 000000000 000001111111111111 2345589999996554344444544443333457788777543 22
Q ss_pred HHhhcC-CceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHH
Q 000692 317 ALTMGS-GGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARA 376 (1349)
Q Consensus 317 ~~~~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 376 (1349)
...+.. ...+++.+++.++..+.+.+.+...+..-+ .+..+.+++.++|.+-.+..
T Consensus 169 ~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~----~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 169 IPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD----DDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred chhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 222221 246889999999999999887643332211 44567788999988655544
No 60
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=2e-05 Score=95.97 Aligned_cols=181 Identities=15% Similarity=0.100 Sum_probs=111.0
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-cC-------------------ce
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-FD-------------------PK 228 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~-------------------~~ 228 (1349)
..++|.+..++.+..++... .-...+.++|..|+||||+|+.+++...... .+ .+
T Consensus 16 ddIIGQe~Iv~~LknaI~~~-----rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQ-----RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhC-----CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 46899999999999888642 2245668999999999999999987653211 10 11
Q ss_pred EEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHH-HHhcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEE
Q 000692 229 AWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLK-EALFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRI 307 (1349)
Q Consensus 229 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~i 307 (1349)
+++.......+ +++.++...+. .-..+++-++|+|++..-....+..+...+-.-....++
T Consensus 91 iEidAas~~kV------------------DdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrF 152 (944)
T PRK14949 91 IEVDAASRTKV------------------DDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKF 152 (944)
T ss_pred EEeccccccCH------------------HHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEE
Confidence 22211111111 11222222221 112467789999999777667777777666544455666
Q ss_pred EEEecc-hhHHHhhcC-CceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHH
Q 000692 308 IVTTRS-VDVALTMGS-GGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARA 376 (1349)
Q Consensus 308 lvTtR~-~~v~~~~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 376 (1349)
|++|.+ ..+...+.. -..|++++++.++..+.+.+.+...+... -.+....|++.++|.|--+..
T Consensus 153 ILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~----edeAL~lIA~~S~Gd~R~ALn 219 (944)
T PRK14949 153 LLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPF----EAEALTLLAKAANGSMRDALS 219 (944)
T ss_pred EEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 655544 444322221 24799999999999999988764322111 134557789999998854433
No 61
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.29 E-value=9.9e-07 Score=71.72 Aligned_cols=57 Identities=30% Similarity=0.452 Sum_probs=44.2
Q ss_pred CcccEEEeccccccccC-ccccCCCccceEEecCCCCccccc-ccccCCCCcEEEecCc
Q 000692 581 KKLRVLSLRRYYITEVP-ISIGCLRHLRYLNFSDTKIKCLPE-SVTSLLNLEILILRDC 637 (1349)
Q Consensus 581 ~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~l~~~ 637 (1349)
++|++|++++|.++.+| ..|.++++|++|++++|.++.+|+ .+.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 35788888888888876 467788888888888888887754 5678888888888877
No 62
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=4.5e-06 Score=98.80 Aligned_cols=196 Identities=17% Similarity=0.102 Sum_probs=112.0
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-cCceEEEEecccccHHHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-FDPKAWVCVSDDFDVLRISKVIL 247 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~ 247 (1349)
..++|.+...+.+..++... .-...+.++|++|+||||+|+.+++.....+ +....|.+.+-. .+.......+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~-----~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQG-----RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCCce
Confidence 35899999888888888643 2346679999999999999999887653221 222223221100 0000000000
Q ss_pred HHccCC-CCCcCChHHHHHHHHH-HhcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecc-hhHHHhhcC-C
Q 000692 248 ESITLS-PCELKDLNSVQLKLKE-ALFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRS-VDVALTMGS-G 323 (1349)
Q Consensus 248 ~~l~~~-~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~-~~v~~~~~~-~ 323 (1349)
..+... .....++.++...+.. -..+++-++|+|+++......+..+...+........+|++|.. ..+...+.. .
T Consensus 88 ~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc 167 (504)
T PRK14963 88 LEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRT 167 (504)
T ss_pred EEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcce
Confidence 000000 0011111122111111 12356679999999876666777887777654455565555543 333322222 2
Q ss_pred ceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHH
Q 000692 324 GYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAA 374 (1349)
Q Consensus 324 ~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 374 (1349)
..+++.+++.++..+.+.+.+...+...+ .+....|++.++|.+--+
T Consensus 168 ~~~~f~~ls~~el~~~L~~i~~~egi~i~----~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 168 QHFRFRRLTEEEIAGKLRRLLEAEGREAE----PEALQLVARLADGAMRDA 214 (504)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 47899999999999999988754332211 345577899999988544
No 63
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=4.3e-05 Score=86.55 Aligned_cols=204 Identities=13% Similarity=0.097 Sum_probs=128.7
Q ss_pred cccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCc-eEEEEecccccHHHHHHHHHHH
Q 000692 171 VYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDP-KAWVCVSDDFDVLRISKVILES 249 (1349)
Q Consensus 171 ~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~ 249 (1349)
+.+|+++++++...|...-. +..+.-+.|+|..|.|||+.++.++...+...-.. +++|++....+..+++..|+++
T Consensus 19 l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 19 LPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred ccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHH
Confidence 89999999999998876433 22333489999999999999999998865443222 8999999999999999999999
Q ss_pred ccCCCCCcCChHHHHHHHHHHhc--CCceEEEEeCCCCCChhhHHHhhccCCCC-CCCcEE--EEEecchhHHHhhcC--
Q 000692 250 ITLSPCELKDLNSVQLKLKEALF--KKKYLIVLDDVWSKSYDLWQALKSPFMVG-APDSRI--IVTTRSVDVALTMGS-- 322 (1349)
Q Consensus 250 l~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~~~~~~~~~l~~~-~~gs~i--lvTtR~~~v~~~~~~-- 322 (1349)
++..+.......+....+.+.+. ++.+++|||++..-....-+.+..-+... ..+++| |..+-+......+..
T Consensus 97 ~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv 176 (366)
T COG1474 97 LGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRV 176 (366)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhh
Confidence 97555545556666666766664 57899999999442111102222222211 123443 344444333322211
Q ss_pred -----CceEeCCCCChhhHHHHHHHHHhcCC-CCCCchhHHHHHHHHHHHhCC-ChHHHHH
Q 000692 323 -----GGYCELKLLSDDDCWSVFVKHAFESR-DAGTHENLESIRQKVVEKCKG-LPLAARA 376 (1349)
Q Consensus 323 -----~~~~~l~~L~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~g-~PLal~~ 376 (1349)
...+..+|-+.+|-.+.+..++-..- ...-++..-+++..++..-+| -=.|+..
T Consensus 177 ~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidi 237 (366)
T COG1474 177 KSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDI 237 (366)
T ss_pred hhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHH
Confidence 12478899999999999988874221 111222333444444444444 3344444
No 64
>PLN03150 hypothetical protein; Provisional
Probab=98.25 E-value=1.1e-06 Score=108.62 Aligned_cols=92 Identities=29% Similarity=0.417 Sum_probs=84.7
Q ss_pred cccEEEecccccc-ccCccccCCCccceEEecCCCCc-ccccccccCCCCcEEEecCccCCCcCchhhhccccccEEEec
Q 000692 582 KLRVLSLRRYYIT-EVPISIGCLRHLRYLNFSDTKIK-CLPESVTSLLNLEILILRDCLHLLKLPSSIGNLVKLLHLDIE 659 (1349)
Q Consensus 582 ~Lr~L~L~~~~i~-~lp~~i~~L~~Lr~L~Ls~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~ 659 (1349)
.++.|+|++|.+. .+|..|+++.+|++|+|++|.+. .+|..++.+++|++|+|++|.....+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999997 67999999999999999999998 889999999999999999997778999999999999999999
Q ss_pred CCCccccCcccccc
Q 000692 660 GANLLSELPLRMKE 673 (1349)
Q Consensus 660 ~~~~~~~~p~~i~~ 673 (1349)
+|.+...+|..++.
T Consensus 499 ~N~l~g~iP~~l~~ 512 (623)
T PLN03150 499 GNSLSGRVPAALGG 512 (623)
T ss_pred CCcccccCChHHhh
Confidence 99988889987764
No 65
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=2.9e-05 Score=87.77 Aligned_cols=177 Identities=18% Similarity=0.191 Sum_probs=112.8
Q ss_pred ccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCC----Ccc-cCceEEEEe-cccccHHHHH
Q 000692 170 AVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKS----VED-FDPKAWVCV-SDDFDVLRIS 243 (1349)
Q Consensus 170 ~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~----~~~-f~~~~wv~~-~~~~~~~~~~ 243 (1349)
.++|.+...+.+..++..+ .-.+...++|+.|+||||+|+.+++... ... +|...|... +.....++ .
T Consensus 5 ~i~g~~~~~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-i 78 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-I 78 (313)
T ss_pred hccCcHHHHHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-H
Confidence 4789888899999988532 2356778999999999999999887431 112 455455442 22222222 2
Q ss_pred HHHHHHccCCCCCcCChHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecchhHH-Hhhc-
Q 000692 244 KVILESITLSPCELKDLNSVQLKLKEALFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRSVDVA-LTMG- 321 (1349)
Q Consensus 244 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~~v~-~~~~- 321 (1349)
+++.+.+...+ ..+++=++|+|+++.-+...+..+...+....+++.+|++|.+.+.. ..+.
T Consensus 79 r~~~~~~~~~p----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~S 142 (313)
T PRK05564 79 RNIIEEVNKKP----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKS 142 (313)
T ss_pred HHHHHHHhcCc----------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHh
Confidence 23333322111 12456677788876656677888888887766788888888765322 1111
Q ss_pred CCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHH
Q 000692 322 SGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARA 376 (1349)
Q Consensus 322 ~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 376 (1349)
-...+++.++++++....+.+... .. + .+.++.++..++|.|..+..
T Consensus 143 Rc~~~~~~~~~~~~~~~~l~~~~~---~~--~---~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 143 RCQIYKLNRLSKEEIEKFISYKYN---DI--K---EEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred hceeeeCCCcCHHHHHHHHHHHhc---CC--C---HHHHHHHHHHcCCCHHHHHH
Confidence 124789999999999887765541 11 1 22356778999999876543
No 66
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.24 E-value=1.7e-06 Score=90.15 Aligned_cols=77 Identities=18% Similarity=0.242 Sum_probs=43.2
Q ss_pred ccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEeccc-----ccHHHHHH
Q 000692 170 AVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDD-----FDVLRISK 244 (1349)
Q Consensus 170 ~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~ 244 (1349)
.|+||+++++++...+. .. .....+.+.|+|.+|+|||+|+++++......++ ..+.+.+... .....+++
T Consensus 1 ~fvgR~~e~~~l~~~l~-~~--~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 76 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLD-AA--QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGG-YVISINCDDSERNPYSPFRSALR 76 (185)
T ss_dssp --TT-HHHHHHHHHTTG-GT--SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT---EEEEEEETTTS-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-HH--HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCC-EEEEEEEeccccchhhHHHHHHH
Confidence 48999999999999995 22 2345689999999999999999998887654431 1333333333 12355555
Q ss_pred HHHHHc
Q 000692 245 VILESI 250 (1349)
Q Consensus 245 ~i~~~l 250 (1349)
++++++
T Consensus 77 ~l~~~~ 82 (185)
T PF13191_consen 77 QLIDQL 82 (185)
T ss_dssp HHS---
T ss_pred HHHHHh
Confidence 555553
No 67
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.22 E-value=8.3e-06 Score=81.59 Aligned_cols=125 Identities=21% Similarity=0.153 Sum_probs=73.9
Q ss_pred ccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHcc
Q 000692 172 YGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESIT 251 (1349)
Q Consensus 172 ~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 251 (1349)
.|++..+.++...+... ..+.+.|+|.+|+|||++|+++++..... ...++++.+.+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~-- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELFRP-GAPFLYLNASDLLEGLVVAELFGHF-- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhhcC-CCCeEEEehhhhhhhhHHHHHhhhh--
Confidence 47888889988887532 34688999999999999999999875322 2456677665543322221111100
Q ss_pred CCCCCcCChHHHHHHHHHHhcCCceEEEEeCCCCCCh---hhHHHhhccCCCC---CCCcEEEEEecchh
Q 000692 252 LSPCELKDLNSVQLKLKEALFKKKYLIVLDDVWSKSY---DLWQALKSPFMVG---APDSRIIVTTRSVD 315 (1349)
Q Consensus 252 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~---~~~~~~~~~l~~~---~~gs~ilvTtR~~~ 315 (1349)
............++.++|+||++.-.. ..+.......... ..+..||+||....
T Consensus 72 ----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 001111222345788999999975321 2233333333221 36788888888643
No 68
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=5.6e-05 Score=89.08 Aligned_cols=193 Identities=15% Similarity=0.116 Sum_probs=112.2
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-cCc-eEEEEecccccHHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-FDP-KAWVCVSDDFDVLRISKVI 246 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~~-~~wv~~~~~~~~~~~~~~i 246 (1349)
..++|.+..+..+...+... .-.+.+.++|+.|+||||+|+.+++...-.. ... -.+..+... ...+.+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~-----ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILND-----RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHH
Confidence 35889999988888877532 2346789999999999999999987642211 100 000001110 011111
Q ss_pred HHHccC-----CCCCcCChHHHHHHHHH----HhcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEE-EecchhH
Q 000692 247 LESITL-----SPCELKDLNSVQLKLKE----ALFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIV-TTRSVDV 316 (1349)
Q Consensus 247 ~~~l~~-----~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv-TtR~~~v 316 (1349)
...... ........+++...+.. -..+++-++|+|+++.-....|..+...+....+.+.+|+ ||+...+
T Consensus 92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 110000 00011122222222211 1245677999999987766778888777765445666554 5555555
Q ss_pred HHhhcC-CceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHH
Q 000692 317 ALTMGS-GGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAA 374 (1349)
Q Consensus 317 ~~~~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 374 (1349)
...+.. ...+++++++.++....+.+.+...+...+ .+....|++.++|.+--+
T Consensus 172 ~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie----~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 172 PATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD----IEALRIIAYKSEGSARDA 226 (507)
T ss_pred hHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 443322 246899999999999999988854332222 334466899999977444
No 69
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.21 E-value=7.3e-08 Score=107.50 Aligned_cols=181 Identities=20% Similarity=0.243 Sum_probs=131.5
Q ss_pred CCCcccEEEeccccccccCccccCCCccceEEecCCCCcccccccccCCCCcEEEecCccCCCcCchhhhccccccEEEe
Q 000692 579 KFKKLRVLSLRRYYITEVPISIGCLRHLRYLNFSDTKIKCLPESVTSLLNLEILILRDCLHLLKLPSSIGNLVKLLHLDI 658 (1349)
Q Consensus 579 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 658 (1349)
.+..-...||+.|++.++|..++.+..|..|.|+.|.+..+|..+++|..|.+|||+.| .+..+|..++.|. |+.|-+
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEE
Confidence 34455668999999999999999999999999999999999999999999999999998 7899999988775 889989
Q ss_pred cCCCccccCccccccCcCCCCCCeeEeCcCCccCcccccccccCCceEEEcCCcCCCChhhhhHhhccCCCCCCeEEEEe
Q 000692 659 EGANLLSELPLRMKELKCLQTLTNFIVSKGSGCTLKDLKNWKFLRGRLCISGLENVINSQEANEAMLREKKGLKFLQLEW 738 (1349)
Q Consensus 659 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 738 (1349)
++|+ ++.+|..++.+..|..|+...+ .+ .
T Consensus 151 sNNk-l~~lp~~ig~~~tl~~ld~s~n------ei---~----------------------------------------- 179 (722)
T KOG0532|consen 151 SNNK-LTSLPEEIGLLPTLAHLDVSKN------EI---Q----------------------------------------- 179 (722)
T ss_pred ecCc-cccCCcccccchhHHHhhhhhh------hh---h-----------------------------------------
Confidence 9888 8999999986666666532100 00 0
Q ss_pred cCCCCCccchHHHHHHhhcCCCCCCCCcEEEeeeCCCCCCcccCCCCCCCeeEEEEecCCCCCCCCC-CCCcCCCceeee
Q 000692 739 GAELDDSRDKAREMNILDMLQPHRNVKGLAVNFYGGAKFPSWVGDPSFSNIVFLILQNCKRCTSLPT-LGQLCSLKDLTI 817 (1349)
Q Consensus 739 ~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~l 817 (1349)
.....+.....|+.|.+..|....+|..+. .-.|..|+++.| ++..+|. +.++..|++|.|
T Consensus 180 --------------slpsql~~l~slr~l~vrRn~l~~lp~El~---~LpLi~lDfScN-kis~iPv~fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 180 --------------SLPSQLGYLTSLRDLNVRRNHLEDLPEELC---SLPLIRLDFSCN-KISYLPVDFRKMRHLQVLQL 241 (722)
T ss_pred --------------hchHHhhhHHHHHHHHHhhhhhhhCCHHHh---CCceeeeecccC-ceeecchhhhhhhhheeeee
Confidence 001112222344455566666677776664 234777787766 4556665 788888888888
Q ss_pred cCCCCceEeCcccc
Q 000692 818 VGMSGLRSVGSEIY 831 (1349)
Q Consensus 818 ~~~~~l~~i~~~~~ 831 (1349)
.+ +-+...+..+.
T Consensus 242 en-NPLqSPPAqIC 254 (722)
T KOG0532|consen 242 EN-NPLQSPPAQIC 254 (722)
T ss_pred cc-CCCCCChHHHH
Confidence 76 34555554443
No 70
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=5.3e-05 Score=89.31 Aligned_cols=199 Identities=16% Similarity=0.132 Sum_probs=111.3
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILE 248 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 248 (1349)
..+||.+..++.+..++.... -...+.++|..|+||||+|+.+++...-..-+..--+. ..........+.|..
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~-~~PCG~C~sC~~I~a 89 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT-AQPCGQCRACTEIDA 89 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC-CCCCcccHHHHHHHc
Confidence 468999999999999986432 34677899999999999999987754211000000000 000000011111110
Q ss_pred H-----ccCCCCCcCChHHHHHHHHHH----hcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEE-EecchhHHH
Q 000692 249 S-----ITLSPCELKDLNSVQLKLKEA----LFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIV-TTRSVDVAL 318 (1349)
Q Consensus 249 ~-----l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv-TtR~~~v~~ 318 (1349)
. +.........+++..+.+... ..++.-++|+|+++.-+...+..+...+-.-..+.++|+ ||....+..
T Consensus 90 G~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlp 169 (700)
T PRK12323 90 GRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPV 169 (700)
T ss_pred CCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhh
Confidence 0 000000011122222222111 245667999999977776777777776654444556554 554444443
Q ss_pred hhcCC-ceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHH
Q 000692 319 TMGSG-GYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARAL 377 (1349)
Q Consensus 319 ~~~~~-~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 377 (1349)
.+... ..+.++.++.++..+.+.+.+...+...+ .+..+.|++.++|.|.....+
T Consensus 170 TIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d----~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 170 TVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE----VNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 32221 46899999999999998877643222111 234467899999998654443
No 71
>PLN03025 replication factor C subunit; Provisional
Probab=98.19 E-value=4.3e-05 Score=86.61 Aligned_cols=182 Identities=14% Similarity=0.133 Sum_probs=104.0
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccC-ceEEEEecccccHHHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFD-PKAWVCVSDDFDVLRISKVIL 247 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~ 247 (1349)
..++|.++.++.+..++... ....+.++|++|+||||+|+.+++......|. .++-+..++..... ..+.+.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~-~vr~~i 85 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGID-VVRNKI 85 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHH-HHHHHH
Confidence 35889888888888776432 23457799999999999999998764322232 12222223222222 122222
Q ss_pred HHccCCCCCcCChHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecch-hHHHhhcC-Cce
Q 000692 248 ESITLSPCELKDLNSVQLKLKEALFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRSV-DVALTMGS-GGY 325 (1349)
Q Consensus 248 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~-~v~~~~~~-~~~ 325 (1349)
..+...... .-.++.-++|+|+++.-.......+...+-.....+++++++... .+...+.. ...
T Consensus 86 ~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~ 152 (319)
T PLN03025 86 KMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAI 152 (319)
T ss_pred HHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhc
Confidence 111100000 002356699999997655444445544443333556777766542 22111111 246
Q ss_pred EeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHH
Q 000692 326 CELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAA 374 (1349)
Q Consensus 326 ~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 374 (1349)
++++++++++....+...+...+..-+ .+....|++.++|..-.+
T Consensus 153 i~f~~l~~~~l~~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 153 VRFSRLSDQEILGRLMKVVEAEKVPYV----PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 899999999999999887744332222 344577899999876443
No 72
>PRK08727 hypothetical protein; Validated
Probab=98.19 E-value=3e-05 Score=83.09 Aligned_cols=148 Identities=18% Similarity=0.099 Sum_probs=89.1
Q ss_pred EEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCce
Q 000692 197 RLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKKKY 276 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 276 (1349)
..+.|+|..|+|||+||+++++....+ ...++|+++.+ ....+.+ .+. .+ .+.-
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~-~~~~~y~~~~~------~~~~~~~-----------------~~~-~l-~~~d 95 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQA-GRSSAYLPLQA------AAGRLRD-----------------ALE-AL-EGRS 95 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEEeHHH------hhhhHHH-----------------HHH-HH-hcCC
Confidence 469999999999999999998764433 23456666432 1111110 111 11 2345
Q ss_pred EEEEeCCCCCC-hhhHHH-hhccCCC-CCCCcEEEEEecc---------hhHHHhhcCCceEeCCCCChhhHHHHHHHHH
Q 000692 277 LIVLDDVWSKS-YDLWQA-LKSPFMV-GAPDSRIIVTTRS---------VDVALTMGSGGYCELKLLSDDDCWSVFVKHA 344 (1349)
Q Consensus 277 LlVlDdv~~~~-~~~~~~-~~~~l~~-~~~gs~ilvTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~l~~~~~ 344 (1349)
+||+||+.... ...|.. +...+-. ...|..||+|++. +++..++.....+++++++.++-.+++.+++
T Consensus 96 lLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a 175 (233)
T PRK08727 96 LVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERA 175 (233)
T ss_pred EEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHH
Confidence 99999995432 122332 2221111 1346679999984 2333344445688999999999999999877
Q ss_pred hcCCCCCCchhHHHHHHHHHHHhCCChHHH
Q 000692 345 FESRDAGTHENLESIRQKVVEKCKGLPLAA 374 (1349)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 374 (1349)
...+-.- -+++...|++.++|-.-.+
T Consensus 176 ~~~~l~l----~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 176 QRRGLAL----DEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHcCCCC----CHHHHHHHHHhCCCCHHHH
Confidence 5432211 1455567888888766555
No 73
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.18 E-value=3.4e-06 Score=89.90 Aligned_cols=89 Identities=21% Similarity=0.132 Sum_probs=61.8
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEeccc--ccHHHHHHHHHHHccCCCCCcCChH------HHHHHH
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDD--FDVLRISKVILESITLSPCELKDLN------SVQLKL 267 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~l 267 (1349)
...++|+|++|+|||||+++++++.....|+.++|+.+... .++.++++.+...+-....+..... ......
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a 95 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKA 95 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 46889999999999999999999876556999999997776 7889999998433322221111111 111222
Q ss_pred HHH-hcCCceEEEEeCCC
Q 000692 268 KEA-LFKKKYLIVLDDVW 284 (1349)
Q Consensus 268 ~~~-l~~~~~LlVlDdv~ 284 (1349)
... -.++++++++|++.
T Consensus 96 ~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 96 KRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHCCCCEEEEEECHH
Confidence 221 24799999999993
No 74
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=6.6e-05 Score=89.02 Aligned_cols=186 Identities=16% Similarity=0.102 Sum_probs=111.4
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc--------------------cCce
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED--------------------FDPK 228 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~--------------------f~~~ 228 (1349)
..++|.+..+..+...+... .-...+.++|+.|+||||+|+.+++...-.. |...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~-----rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQ-----KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 45889999999999888542 2345678999999999999999987432100 1122
Q ss_pred EEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHH-HhcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEE
Q 000692 229 AWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKE-ALFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRI 307 (1349)
Q Consensus 229 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~i 307 (1349)
+++.......++ +..++...+.. -..+++-++|+|++..-....+..+...+-.....+.+
T Consensus 91 ieidaas~~gvd------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDAASRTGVE------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeecccccCHH------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 222221111111 11222222221 12456779999999766666777777776654455655
Q ss_pred EE-EecchhHHHhhc-CCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCCh-HHHHHHHHhh
Q 000692 308 IV-TTRSVDVALTMG-SGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLP-LAARALGGLL 381 (1349)
Q Consensus 308 lv-TtR~~~v~~~~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~~~~l 381 (1349)
|+ ||....+...+. ....+++++++.++....+.+.+...+...+ ......|++.++|.+ -|+..+-.++
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e----~~Al~~Ia~~s~GdlR~alnlLek~i 225 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSD----EQSLEYIAYHAKGSLRDALSLLDQAI 225 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 54 554444432222 2257899999999988888776533222111 334466899999976 4555554433
No 75
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=1.2e-05 Score=92.38 Aligned_cols=195 Identities=16% Similarity=0.029 Sum_probs=111.0
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILE 248 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 248 (1349)
..++|.+..+..+..++.... -...+.++|+.|+||||+|+.+++...-..... ...+....+-..+......
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~--~~pCg~C~sC~~i~~g~~~ 90 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCENPIG--NEPCNECTSCLEITKGISS 90 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcccccC--ccccCCCcHHHHHHccCCc
Confidence 468999999999888886432 235689999999999999999988643221100 0011111111111111100
Q ss_pred H---ccC-CCCCcCChHHHHHHHHH-HhcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEE-EEecchhHHHhhcC
Q 000692 249 S---ITL-SPCELKDLNSVQLKLKE-ALFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRII-VTTRSVDVALTMGS 322 (1349)
Q Consensus 249 ~---l~~-~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~il-vTtR~~~v~~~~~~ 322 (1349)
. +.. .....+++.++.+.+.. ...++.-++|+|++..-..+.+..+...+-.......+| .||....+...+..
T Consensus 91 dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~S 170 (484)
T PRK14956 91 DVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILS 170 (484)
T ss_pred cceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHh
Confidence 0 000 00011122222222221 124566799999998777777888877664433445544 44444444333222
Q ss_pred C-ceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHH
Q 000692 323 G-GYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAA 374 (1349)
Q Consensus 323 ~-~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 374 (1349)
. ..|.+.+++.++..+.+.+.+...+..-+ .+....|++.++|.+--+
T Consensus 171 RCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e----~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 171 RCQDFIFKKVPLSVLQDYSEKLCKIENVQYD----QEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred hhheeeecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCChHHHH
Confidence 2 46899999999999988887643322111 344577899999988443
No 76
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.16 E-value=3.7e-05 Score=82.45 Aligned_cols=155 Identities=15% Similarity=0.143 Sum_probs=92.9
Q ss_pred EEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCce
Q 000692 197 RLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKKKY 276 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 276 (1349)
+.+.|+|+.|+|||+||+.+++..... ...+.++++..... . ..+. .+.+.+ --
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~-~~~v~y~~~~~~~~---~-----------------~~~~----~~~~~~-~d 99 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQR-GRAVGYVPLDKRAW---F-----------------VPEV----LEGMEQ-LS 99 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEEHHHHhh---h-----------------hHHH----HHHhhh-CC
Confidence 578999999999999999988764322 23455665532110 0 0111 111111 24
Q ss_pred EEEEeCCCCCC-hhhHHHhh-ccCCC-CCCC-cEEEEEecch---------hHHHhhcCCceEeCCCCChhhHHHHHHHH
Q 000692 277 LIVLDDVWSKS-YDLWQALK-SPFMV-GAPD-SRIIVTTRSV---------DVALTMGSGGYCELKLLSDDDCWSVFVKH 343 (1349)
Q Consensus 277 LlVlDdv~~~~-~~~~~~~~-~~l~~-~~~g-s~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~l~~~~ 343 (1349)
++++||+.... ...|+... ..+.. ...| .++|+||+.. ++..++.....++++++++++-.+++.++
T Consensus 100 lliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~ 179 (235)
T PRK08084 100 LVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLR 179 (235)
T ss_pred EEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHH
Confidence 78999995432 13444321 11111 1123 4799999753 44555666678999999999999999887
Q ss_pred HhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHHhh
Q 000692 344 AFESRDAGTHENLESIRQKVVEKCKGLPLAARALGGLL 381 (1349)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 381 (1349)
+...+ ..- -+++..-|++.+.|..-++..+-..+
T Consensus 180 a~~~~-~~l---~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 180 ARLRG-FEL---PEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHcC-CCC---CHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 74322 111 25566778899988776665544433
No 77
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=3.5e-07 Score=99.11 Aligned_cols=160 Identities=15% Similarity=0.108 Sum_probs=88.1
Q ss_pred CCCCCcCeEEEccCCCcccccc-cccccCCccceEeecCCCCCcccCC----CCCCCCccEEEEccccCccccccccccc
Q 000692 1007 CFLSNLREITIEDCNALTSLTD-GMIHNNARLEVLRIKGCHSLTSISR----GQLPSSLKAIEINNCQILRCVLDDTEDS 1081 (1349)
Q Consensus 1007 ~~l~~L~~L~l~~c~~l~~l~~-~~~~~l~~L~~L~l~~c~~l~~~~~----~~~~~~L~~L~l~~c~~l~~l~~~~~~~ 1081 (1349)
.++.+|+...+.+|. +...+. +....|++++.|+|+.+ .+..+.. ...+++|+.|+++.+.
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nr------------ 183 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNR------------ 183 (505)
T ss_pred hhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhccccccc------------
Confidence 567888888888854 333321 23567888888888874 2222211 1123455555554432
Q ss_pred cCCCCCCcchhhcccccccccccccceeeccCCCCCcccccc-cCCCCccceEEEcccCCcc-ccccccCccccccceEE
Q 000692 1082 CTSSSSSSSIIQEKSINSTSAYLDLESLCVFNCPSLTCLSSR-YQLPVTLKRLDIQMCSNFM-VLTSECQLPEVLEELKI 1159 (1349)
Q Consensus 1082 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~L~~L~L 1159 (1349)
..-...+. -..+++|+.|.++.|...- .+......+++|+.|+|
T Consensus 184 ----------------------------------l~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L 229 (505)
T KOG3207|consen 184 ----------------------------------LSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYL 229 (505)
T ss_pred ----------------------------------ccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhh
Confidence 21111100 1244567777777765432 22333455667777777
Q ss_pred eccCCcccccccccCCCCcceEEecCCCCCcccc--ccCCCCCCcceEEeecCCCCccc
Q 000692 1160 VSCPKLESIAETFFDNARLRSIQIKDCDNLRSIP--KGLHNLSYLHCISIEHCQNLVSF 1216 (1349)
Q Consensus 1160 ~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp--~~~~~l~~L~~L~l~~c~~l~~l 1216 (1349)
..|..+.........+..|++|+|++|+ +.+.+ .....++.|..|.++.| ++.++
T Consensus 230 ~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~t-gi~si 286 (505)
T KOG3207|consen 230 EANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSST-GIASI 286 (505)
T ss_pred hcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhhhcccc-Ccchh
Confidence 7765444333333445677777777775 44443 23556777777777776 44443
No 78
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.14 E-value=4e-05 Score=93.76 Aligned_cols=202 Identities=18% Similarity=0.165 Sum_probs=116.1
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-c---CceEEEEeccc---ccHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-F---DPKAWVCVSDD---FDVLR 241 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f---~~~~wv~~~~~---~~~~~ 241 (1349)
+.++|++..+.++...+.. .....+.|+|++|+||||+|+.+++...... + ...-|+.+... .+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVAS------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 3588999999888877632 2345799999999999999999987643221 2 12334444321 11111
Q ss_pred HHH---------------HHHHHccCCC----------------CCcCCh-HHHHHHHHHHhcCCceEEEEeCCCCCChh
Q 000692 242 ISK---------------VILESITLSP----------------CELKDL-NSVQLKLKEALFKKKYLIVLDDVWSKSYD 289 (1349)
Q Consensus 242 ~~~---------------~i~~~l~~~~----------------~~~~~~-~~~~~~l~~~l~~~~~LlVlDdv~~~~~~ 289 (1349)
+.. ..+...+... ++...+ ...+..+.+.++++++.++-|+.|..+..
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 111 1111111100 011111 23567788888889999998888777667
Q ss_pred hHHHhhccCCCCCCCcEEEE--EecchhH-HHhhcC-CceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHH
Q 000692 290 LWQALKSPFMVGAPDSRIIV--TTRSVDV-ALTMGS-GGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVE 365 (1349)
Q Consensus 290 ~~~~~~~~l~~~~~gs~ilv--TtR~~~v-~~~~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 365 (1349)
.|+.+...+....+...|++ ||++... ...+.. ...+.+.+++.+|.++++.+.+..... .-. .++.+.|++
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v-~ls---~eal~~L~~ 383 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV-HLA---AGVEELIAR 383 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHH
Confidence 78887766665555555555 5664331 111111 135788999999999999987643211 111 233344444
Q ss_pred HhCCChHHHHHHHHh
Q 000692 366 KCKGLPLAARALGGL 380 (1349)
Q Consensus 366 ~~~g~PLal~~~~~~ 380 (1349)
.+..-+-|+..++.+
T Consensus 384 ys~~gRraln~L~~~ 398 (615)
T TIGR02903 384 YTIEGRKAVNILADV 398 (615)
T ss_pred CCCcHHHHHHHHHHH
Confidence 444335555544443
No 79
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.14 E-value=8.1e-05 Score=85.30 Aligned_cols=181 Identities=16% Similarity=0.122 Sum_probs=104.7
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEe--cccccHHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCV--SDDFDVLRISKVI 246 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i 246 (1349)
..++|+++.++.+..++... ..+.+.++|..|+||||+|+.+++......+.. .++.+ +...... ..++.
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~-~~i~~~~~~~~~~~-~~~~~ 88 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELYGEDWRE-NFLELNASDERGID-VIRNK 88 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHcCCcccc-ceEEeccccccchH-HHHHH
Confidence 35889999999999988532 234579999999999999999987643222221 12222 2211111 11111
Q ss_pred HHHccCCCCCcCChHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecch-hHHHhh-cCCc
Q 000692 247 LESITLSPCELKDLNSVQLKLKEALFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRSV-DVALTM-GSGG 324 (1349)
Q Consensus 247 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~-~v~~~~-~~~~ 324 (1349)
+..+.... ......+-++++|++..-..+.+..+...+......+++|+++... .+.... ....
T Consensus 89 i~~~~~~~--------------~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~ 154 (319)
T PRK00440 89 IKEFARTA--------------PVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCA 154 (319)
T ss_pred HHHHHhcC--------------CCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhh
Confidence 11110000 0001345689999986554444555555544434556777776432 221111 1123
Q ss_pred eEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHH
Q 000692 325 YCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAAR 375 (1349)
Q Consensus 325 ~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 375 (1349)
.++++++++++....+...+...+..-+ .+....+++.++|.+--+.
T Consensus 155 ~~~~~~l~~~ei~~~l~~~~~~~~~~i~----~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 155 VFRFSPLKKEAVAERLRYIAENEGIEIT----DDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 6899999999999998887754332211 3455677999999876543
No 80
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=7.6e-05 Score=87.73 Aligned_cols=187 Identities=18% Similarity=0.150 Sum_probs=106.9
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc---c-----------------Cce
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED---F-----------------DPK 228 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~---f-----------------~~~ 228 (1349)
..++|.+.....+...+... .-.+.+.++|++|+||||+|+.+++...... + ..+
T Consensus 14 ~divGq~~i~~~L~~~i~~~-----~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKN-----SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 45899988888877777532 2245688999999999999999987542110 1 012
Q ss_pred EEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEE
Q 000692 229 AWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRII 308 (1349)
Q Consensus 229 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~il 308 (1349)
+.+.++......++ +++.+.... .-..+++-++|+|+++.-.....+.+...+........+|
T Consensus 89 ~el~aa~~~gid~i-R~i~~~~~~----------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~I 151 (472)
T PRK14962 89 IELDAASNRGIDEI-RKIRDAVGY----------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFV 151 (472)
T ss_pred EEEeCcccCCHHHH-HHHHHHHhh----------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEE
Confidence 22222211111111 112111110 0123566799999995544444556665554433344444
Q ss_pred EEecc-hhHHHhhcC-CceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCC-ChHHHHHHHHhh
Q 000692 309 VTTRS-VDVALTMGS-GGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKG-LPLAARALGGLL 381 (1349)
Q Consensus 309 vTtR~-~~v~~~~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~PLal~~~~~~l 381 (1349)
++|.+ ..+...+.. ...+++++++.++....+.+.+...+..-+ .+....|++.++| .+.|+..+-.+.
T Consensus 152 lattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~----~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 152 LATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID----REALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 44433 344333322 247889999999999998887743322211 3445667887765 467777766544
No 81
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.12 E-value=4.2e-07 Score=92.95 Aligned_cols=82 Identities=22% Similarity=0.258 Sum_probs=44.2
Q ss_pred CCCcccEEEeccccccccCccccCCCccceEEecCCCCcccccccccCCCCcEEEecCccCCCcCchhhhccccccEEEe
Q 000692 579 KFKKLRVLSLRRYYITEVPISIGCLRHLRYLNFSDTKIKCLPESVTSLLNLEILILRDCLHLLKLPSSIGNLVKLLHLDI 658 (1349)
Q Consensus 579 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 658 (1349)
..+.|..|||++|.|+.+..++.-++.+|.|++|+|.|..+.. +..|++|+.|||++| .+.++-..=.+|-+.+.|.+
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccc-hhHhhhhhHhhhcCEeeeeh
Confidence 3445556666666666665555555666666666666555533 555666666666655 33333333334444444555
Q ss_pred cCCC
Q 000692 659 EGAN 662 (1349)
Q Consensus 659 ~~~~ 662 (1349)
.+|.
T Consensus 360 a~N~ 363 (490)
T KOG1259|consen 360 AQNK 363 (490)
T ss_pred hhhh
Confidence 4443
No 82
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.11 E-value=0.00011 Score=88.02 Aligned_cols=193 Identities=13% Similarity=0.092 Sum_probs=107.4
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILE 248 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 248 (1349)
..++|.+..++.+..++... .-.+.+.++|..|+||||+|+.+++...... ..-+..+... ...+.+..
T Consensus 16 ddIIGQe~vv~~L~~ai~~~-----rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~--~~~~~pCg~C----~sCr~i~~ 84 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEG-----RLHHAYLLTGTRGVGKTTIARILAKSLNCEN--AQHGEPCGVC----QSCTQIDA 84 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccC--CCCCCCCccc----HHHHHHhc
Confidence 46999999999999998643 2346789999999999999999877532110 0000000000 00001100
Q ss_pred H-----ccCCCCCcCChHHHHHHHHH----HhcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecch-hHHH
Q 000692 249 S-----ITLSPCELKDLNSVQLKLKE----ALFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRSV-DVAL 318 (1349)
Q Consensus 249 ~-----l~~~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~-~v~~ 318 (1349)
. +..........+++...+.. -..+++-++|+|++..-+......+...+-......++|++|.+. .+..
T Consensus 85 g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~ 164 (709)
T PRK08691 85 GRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPV 164 (709)
T ss_pred cCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccch
Confidence 0 00000001112221111111 123566799999997655555666666654333456677666543 2222
Q ss_pred hhc-CCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHH
Q 000692 319 TMG-SGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARA 376 (1349)
Q Consensus 319 ~~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 376 (1349)
.+. .-..+.+++++.++....+.+.+...+...+ ......|++.++|.+--+..
T Consensus 165 TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id----~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 165 TVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE----PPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHhCCCHHHHHH
Confidence 211 1135788899999999999887744332221 34457789999998854433
No 83
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.11 E-value=3.2e-06 Score=68.74 Aligned_cols=58 Identities=34% Similarity=0.517 Sum_probs=51.4
Q ss_pred CccceEEecCCCCccccc-ccccCCCCcEEEecCccCCCcCc-hhhhccccccEEEecCCC
Q 000692 604 RHLRYLNFSDTKIKCLPE-SVTSLLNLEILILRDCLHLLKLP-SSIGNLVKLLHLDIEGAN 662 (1349)
Q Consensus 604 ~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~~~~ 662 (1349)
++|++|++++|.++.+|+ .+.++++|++|++++| .+..+| ..|..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 479999999999999986 5789999999999998 566666 568999999999999986
No 84
>PF14516 AAA_35: AAA-like domain
Probab=98.10 E-value=0.00037 Score=78.93 Aligned_cols=203 Identities=13% Similarity=0.134 Sum_probs=118.7
Q ss_pred CCCCccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEeccc-----ccHH
Q 000692 166 PNEPAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDD-----FDVL 240 (1349)
Q Consensus 166 ~~~~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~-----~~~~ 240 (1349)
++.+..|+|...-+++.+.+...+ ..+.|.|+-.+|||+|..++.+..+..+|. ++++++... .+..
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~~G-------~~~~I~apRq~GKTSll~~l~~~l~~~~~~-~v~id~~~~~~~~~~~~~ 79 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQPG-------SYIRIKAPRQMGKTSLLLRLLERLQQQGYR-CVYIDLQQLGSAIFSDLE 79 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhcCC-------CEEEEECcccCCHHHHHHHHHHHHHHCCCE-EEEEEeecCCCcccCCHH
Confidence 345567788866677777775432 589999999999999999998876544443 557776542 2344
Q ss_pred HHHH----HHHHHccCCCC-------CcCChHHHHHHHHHHh---cCCceEEEEeCCCCCCh--hhHHHhhccCC---C-
Q 000692 241 RISK----VILESITLSPC-------ELKDLNSVQLKLKEAL---FKKKYLIVLDDVWSKSY--DLWQALKSPFM---V- 300 (1349)
Q Consensus 241 ~~~~----~i~~~l~~~~~-------~~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~--~~~~~~~~~l~---~- 300 (1349)
..++ .+.++++.... ...........+.+.+ .+++.+|++|+++.... ...+++...++ .
T Consensus 80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~ 159 (331)
T PF14516_consen 80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQ 159 (331)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHh
Confidence 4444 44455544321 1112222333344332 26899999999954211 11112211111 1
Q ss_pred C--C--CCcEEEEEecchhH--HHh-----hcCCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCC
Q 000692 301 G--A--PDSRIIVTTRSVDV--ALT-----MGSGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKG 369 (1349)
Q Consensus 301 ~--~--~gs~ilvTtR~~~v--~~~-----~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 369 (1349)
. . ...-.+|...+.+. ... +.....++|++++.+|...|+.++-.. . . ....++|...+||
T Consensus 160 ~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~---~--~---~~~~~~l~~~tgG 231 (331)
T PF14516_consen 160 RKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE---F--S---QEQLEQLMDWTGG 231 (331)
T ss_pred cccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc---C--C---HHHHHHHHHHHCC
Confidence 0 0 11112222222111 111 112246899999999999999876421 1 1 1226888999999
Q ss_pred ChHHHHHHHHhhccC
Q 000692 370 LPLAARALGGLLRSR 384 (1349)
Q Consensus 370 ~PLal~~~~~~l~~~ 384 (1349)
+|.-+..++..+...
T Consensus 232 hP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 232 HPYLVQKACYLLVEE 246 (331)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999774
No 85
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.10 E-value=9.1e-05 Score=78.25 Aligned_cols=164 Identities=16% Similarity=0.193 Sum_probs=97.3
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCCCCccc-CceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcC
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDKSVEDF-DPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFK 273 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 273 (1349)
....+.|+|..|+|||.|.+++++....... ..+++++ ..++...+...+.. ....+ +++.++
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~-----~~~~~----~~~~~~- 96 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRD-----GEIEE----FKDRLR- 96 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHT-----TSHHH----HHHHHC-
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHc-----ccchh----hhhhhh-
Confidence 3456899999999999999999987543222 2455655 33444555554432 12222 333343
Q ss_pred CceEEEEeCCCCCCh-hhHHH----hhccCCCCCCCcEEEEEecc---------hhHHHhhcCCceEeCCCCChhhHHHH
Q 000692 274 KKYLIVLDDVWSKSY-DLWQA----LKSPFMVGAPDSRIIVTTRS---------VDVALTMGSGGYCELKLLSDDDCWSV 339 (1349)
Q Consensus 274 ~~~LlVlDdv~~~~~-~~~~~----~~~~l~~~~~gs~ilvTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~l 339 (1349)
.-=+|++||++.-.. ..|.. +...+. ..|.+||+|++. ++...++.....+++++.++++-.++
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~--~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLI--ESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRI 174 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHH--HTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHH
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHH--hhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHH
Confidence 445889999965322 22332 222222 356789999964 33455666677899999999999999
Q ss_pred HHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHHh
Q 000692 340 FVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARALGGL 380 (1349)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~ 380 (1349)
+.+.+...+-. --+++++-|++.+.+..-.+..+-..
T Consensus 175 l~~~a~~~~~~----l~~~v~~~l~~~~~~~~r~L~~~l~~ 211 (219)
T PF00308_consen 175 LQKKAKERGIE----LPEEVIEYLARRFRRDVRELEGALNR 211 (219)
T ss_dssp HHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHHHHH
T ss_pred HHHHHHHhCCC----CcHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 99988533222 12566677788877766655544433
No 86
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=0.0001 Score=83.86 Aligned_cols=196 Identities=15% Similarity=0.046 Sum_probs=112.2
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc---cCc-eEEEEecccccHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED---FDP-KAWVCVSDDFDVLRISK 244 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~---f~~-~~wv~~~~~~~~~~~~~ 244 (1349)
..++|.++..+.+.+.+..+. -...+.++|+.|+||+|+|..+++..--+. .+. ..-...-.........+
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~ 93 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVAR 93 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHH
Confidence 568999999999999886432 346789999999999999998876542111 110 00000000000001112
Q ss_pred HHHHHccCC-------C-C------CcCChHHHHHHHHHHh-----cCCceEEEEeCCCCCChhhHHHhhccCCCCCCCc
Q 000692 245 VILESITLS-------P-C------ELKDLNSVQLKLKEAL-----FKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDS 305 (1349)
Q Consensus 245 ~i~~~l~~~-------~-~------~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs 305 (1349)
.+...-..+ . . ..-.+++ ++.+.+.+ .+++-++|+|++..-+......+...+..-..++
T Consensus 94 ~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~ 172 (365)
T PRK07471 94 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS 172 (365)
T ss_pred HHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence 221111100 0 0 0011233 23333333 2566799999997776666777766665444566
Q ss_pred EEEEEecchh-HHHhhcC-CceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHHH
Q 000692 306 RIIVTTRSVD-VALTMGS-GGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARALG 378 (1349)
Q Consensus 306 ~ilvTtR~~~-v~~~~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 378 (1349)
.+|++|.+.. +...+.. -..+.+.+++.++..+++.+.... ... .. ...+++.++|.|..+..+.
T Consensus 173 ~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-----~~~--~~-~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 173 LFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-----LPD--DP-RAALAALAEGSVGRALRLA 239 (365)
T ss_pred EEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-----CCH--HH-HHHHHHHcCCCHHHHHHHh
Confidence 6777776643 3222222 247899999999999999875411 111 11 2567999999998665543
No 87
>PRK09087 hypothetical protein; Validated
Probab=98.09 E-value=5.2e-05 Score=80.33 Aligned_cols=143 Identities=14% Similarity=0.082 Sum_probs=90.1
Q ss_pred EEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCce
Q 000692 197 RLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKKKY 276 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 276 (1349)
+.+.|+|..|+|||+|++.+++... ..+++.. .+...+...+ .+ -
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~------~~~i~~~------~~~~~~~~~~---------------------~~--~ 89 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSD------ALLIHPN------EIGSDAANAA---------------------AE--G 89 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcC------CEEecHH------HcchHHHHhh---------------------hc--C
Confidence 5689999999999999999887532 1233321 1111111111 11 2
Q ss_pred EEEEeCCCCC--ChhhHHHhhccCCCCCCCcEEEEEecc---------hhHHHhhcCCceEeCCCCChhhHHHHHHHHHh
Q 000692 277 LIVLDDVWSK--SYDLWQALKSPFMVGAPDSRIIVTTRS---------VDVALTMGSGGYCELKLLSDDDCWSVFVKHAF 345 (1349)
Q Consensus 277 LlVlDdv~~~--~~~~~~~~~~~l~~~~~gs~ilvTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~ 345 (1349)
+|++||+... +.+.+-.+...+. ..|..||+|++. ++...++.....+++++++.++-.+++.+.+.
T Consensus 90 ~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 90 PVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred eEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHH
Confidence 7888999542 2233333333333 346779998873 44555666677899999999999999998884
Q ss_pred cCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHHh
Q 000692 346 ESRDAGTHENLESIRQKVVEKCKGLPLAARALGGL 380 (1349)
Q Consensus 346 ~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~ 380 (1349)
...- .- -+++..-|++.+.|..-++..+-..
T Consensus 168 ~~~~-~l---~~ev~~~La~~~~r~~~~l~~~l~~ 198 (226)
T PRK09087 168 DRQL-YV---DPHVVYYLVSRMERSLFAAQTIVDR 198 (226)
T ss_pred HcCC-CC---CHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4221 11 1456677888888887776654333
No 88
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=9.2e-05 Score=87.70 Aligned_cols=196 Identities=14% Similarity=0.123 Sum_probs=108.6
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILE 248 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 248 (1349)
..++|++..++.+..++... .-.+.+.++|+.|+||||+|+.+++...-.. |... .........+.+..
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~-----rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~-----~~~~-~~Cg~C~sCr~i~~ 84 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNN-----KLTHAYIFSGPRGIGKTSIAKIFAKAINCLN-----PKDG-DCCNSCSVCESINT 84 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCCC-----CCCC-CCCcccHHHHHHHc
Confidence 46889999999999988543 2346788999999999999999887542111 1110 01111111122111
Q ss_pred HccCC-----CCCcCChH---HHHHHHHH-HhcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEe-cchhHHH
Q 000692 249 SITLS-----PCELKDLN---SVQLKLKE-ALFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTT-RSVDVAL 318 (1349)
Q Consensus 249 ~l~~~-----~~~~~~~~---~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTt-R~~~v~~ 318 (1349)
..... .......+ ++...+.. -..+++-++|+|+++.-....+..+...+-.......+|++| ....+..
T Consensus 85 ~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~ 164 (605)
T PRK05896 85 NQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPL 164 (605)
T ss_pred CCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhH
Confidence 11000 00001112 22211111 012344479999996655566777766664433455555444 4444432
Q ss_pred hhc-CCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChH-HHHHHHH
Q 000692 319 TMG-SGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPL-AARALGG 379 (1349)
Q Consensus 319 ~~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~~~ 379 (1349)
.+. ....+++.++++++....+...+...+..-+ .+.+..+++.++|.+- |+..+-.
T Consensus 165 TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is----~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 165 TIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE----DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 221 2347899999999999988877643322111 3345678999999664 4444443
No 89
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=8.2e-05 Score=89.60 Aligned_cols=193 Identities=15% Similarity=0.099 Sum_probs=110.6
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-cCceEEEEecccccHHHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-FDPKAWVCVSDDFDVLRISKVIL 247 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~ 247 (1349)
..++|.+..++.+...+... .-...+.++|..|+||||+|+.+++...-.. +.. .+...-...+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~-----rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~-------~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLG-----RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA-------TPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC-------CCCCCCHHHHHHH
Confidence 46899999999998888542 2245678999999999999999977543211 100 0001111122221
Q ss_pred HH-------ccCC-CCCcCChHHHHHHHHH-HhcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecc-hhHH
Q 000692 248 ES-------ITLS-PCELKDLNSVQLKLKE-ALFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRS-VDVA 317 (1349)
Q Consensus 248 ~~-------l~~~-~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~-~~v~ 317 (1349)
.. +... ....+++.++...+.. -..+++-++|+|++..-.......+...+-.-....++|++|.+ ..+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 10 0000 0011112222222211 12467779999999776666777776666544445555554444 4443
Q ss_pred HhhcC-CceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHH
Q 000692 318 LTMGS-GGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARAL 377 (1349)
Q Consensus 318 ~~~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 377 (1349)
..+.. -..+++++++.++..+.+.+.+...+...+ ......|++.++|.+-.+..+
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e----~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFE----PRALQLLARAADGSMRDALSL 220 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 22221 247899999999999999876633222111 334467899999988644443
No 90
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.07 E-value=7.5e-05 Score=80.36 Aligned_cols=153 Identities=21% Similarity=0.158 Sum_probs=89.1
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCc
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKKK 275 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 275 (1349)
.+.+.|+|..|+|||+||+.+++.....+. .+.++++..... . + .. ....
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~-~~~~i~~~~~~~------~----~------------------~~-~~~~ 91 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGR-NARYLDAASPLL------A----F------------------DF-DPEA 91 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCC-cEEEEehHHhHH------H----H------------------hh-cccC
Confidence 457899999999999999999886422212 344555433210 0 0 01 1234
Q ss_pred eEEEEeCCCCCChhhHHHhhccCCC-CCCCc-EEEEEecchhHHH--------hhcCCceEeCCCCChhhHHHHHHHHHh
Q 000692 276 YLIVLDDVWSKSYDLWQALKSPFMV-GAPDS-RIIVTTRSVDVAL--------TMGSGGYCELKLLSDDDCWSVFVKHAF 345 (1349)
Q Consensus 276 ~LlVlDdv~~~~~~~~~~~~~~l~~-~~~gs-~ilvTtR~~~v~~--------~~~~~~~~~l~~L~~~~~~~l~~~~~~ 345 (1349)
-+||+||+...+...-..+...+.. ...+. .||+|++...... .+.....+++.++++++-..++.+.+.
T Consensus 92 ~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~ 171 (227)
T PRK08903 92 ELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAA 171 (227)
T ss_pred CEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHH
Confidence 4788999954332222233333321 12333 4667766433221 233345789999999987777776543
Q ss_pred cCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHHhhc
Q 000692 346 ESRDAGTHENLESIRQKVVEKCKGLPLAARALGGLLR 382 (1349)
Q Consensus 346 ~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~ 382 (1349)
..+ ..-+ ++..+.+++.+.|.+..+..+...+.
T Consensus 172 ~~~-v~l~---~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 172 ERG-LQLA---DEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred HcC-CCCC---HHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 222 1111 44567788899999998877766653
No 91
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.05 E-value=0.00022 Score=83.05 Aligned_cols=184 Identities=15% Similarity=0.082 Sum_probs=108.4
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCc---ccC-----------------ce
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVE---DFD-----------------PK 228 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~---~f~-----------------~~ 228 (1349)
..++|.+..++.+..++..+ .-...+.++|+.|+||||+|+.++...... .+. .+
T Consensus 14 ~~iig~~~~~~~l~~~~~~~-----~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNG-----RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 35799999999999988532 234678899999999999999887653211 010 11
Q ss_pred EEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEE
Q 000692 229 AWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRII 308 (1349)
Q Consensus 229 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~il 308 (1349)
+++......... ..+++.+.+... -..+++-++|+|++..-.......+...+......+.+|
T Consensus 89 ~~~~~~~~~~~~-~~~~l~~~~~~~----------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lI 151 (355)
T TIGR02397 89 IEIDAASNNGVD-DIREILDNVKYA----------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFI 151 (355)
T ss_pred EEeeccccCCHH-HHHHHHHHHhcC----------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEE
Confidence 222221111111 111122111100 123455689999996554455666666664434556666
Q ss_pred EEecchh-HHHhhc-CCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHHH
Q 000692 309 VTTRSVD-VALTMG-SGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARALG 378 (1349)
Q Consensus 309 vTtR~~~-v~~~~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 378 (1349)
++|.+.. +...+. ....+++.++++++..+.+...+...+..-+ .+.+..+++.++|.|..+....
T Consensus 152 l~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~----~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 152 LATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE----DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCChHHHHHHH
Confidence 6665443 222221 2246888999999999888887643322111 3556778999999987665443
No 92
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=0.00013 Score=83.74 Aligned_cols=191 Identities=16% Similarity=0.116 Sum_probs=105.5
Q ss_pred ccccchhhHHHHHHHHhccCCC----CCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHH
Q 000692 170 AVYGRDEDKARVLKIVLKIDPN----DDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKV 245 (1349)
Q Consensus 170 ~~~Gr~~~~~~l~~~l~~~~~~----~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 245 (1349)
.++|.+..++.+..++...... +..-.+.+.++|+.|+|||++|+.++....-..-+ +-.+... ...+.
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~---~~~Cg~C----~~C~~ 78 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD---EPGCGEC----RACRT 78 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC---CCCCCCC----HHHHH
Confidence 5889999999999998754310 01135678899999999999999987643111000 0000000 00111
Q ss_pred HHHHccC------CCCCcCChHHHHHHHHHHh-----cCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecch
Q 000692 246 ILESITL------SPCELKDLNSVQLKLKEAL-----FKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRSV 314 (1349)
Q Consensus 246 i~~~l~~------~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~ 314 (1349)
+...-.. .......+++.. .+.+.. .+++-++|+|++..-.......+...+-...++..+|++|.+.
T Consensus 79 ~~~~~hpD~~~i~~~~~~i~i~~iR-~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~ 157 (394)
T PRK07940 79 VLAGTHPDVRVVAPEGLSIGVDEVR-ELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSP 157 (394)
T ss_pred HhcCCCCCEEEeccccccCCHHHHH-HHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECCh
Confidence 1100000 000011122211 122211 2455588889997665555566666554444566666666553
Q ss_pred -hHHHhhcC-CceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHH
Q 000692 315 -DVALTMGS-GGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARAL 377 (1349)
Q Consensus 315 -~v~~~~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 377 (1349)
.+...+.. -..+.+.+++.++..+.+.+... . + .+.+..+++.++|.|.....+
T Consensus 158 ~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~----~--~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 158 EDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG----V--D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred HHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC----C--C---HHHHHHHHHHcCCCHHHHHHH
Confidence 33323222 24789999999999988864321 1 1 234567899999999765444
No 93
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.00049 Score=82.22 Aligned_cols=197 Identities=13% Similarity=0.129 Sum_probs=111.9
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-cCceEEEEecccccHHHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-FDPKAWVCVSDDFDVLRISKVIL 247 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~ 247 (1349)
..++|.+..+..+..++... .-...+.++|+.|+||||+|+.+++...-.. .+. ..+..-...+.+.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~-----ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQEN-----RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHh
Confidence 35789888888888887532 2246788999999999999999887653211 100 0001111111111
Q ss_pred HHccCCC-----CCcCChHH---HHHHHHH-HhcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecc-hhHH
Q 000692 248 ESITLSP-----CELKDLNS---VQLKLKE-ALFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRS-VDVA 317 (1349)
Q Consensus 248 ~~l~~~~-----~~~~~~~~---~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~-~~v~ 317 (1349)
....... .....+++ +...+.. -..+++-+||+|++..-....+..+...+-.......+|++|.. ..+.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 1100000 00011111 1111111 12356679999999766656677777766543345556555544 4443
Q ss_pred Hhhc-CCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCCh-HHHHHHHHhh
Q 000692 318 LTMG-SGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLP-LAARALGGLL 381 (1349)
Q Consensus 318 ~~~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~~~~l 381 (1349)
..+. ....+++++++.++..+.+.+.+......-+ .+.++.|++.++|.+ -|+..+...+
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id----~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD----PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3221 1246899999999999988887643332111 345577899999965 6777766554
No 94
>PLN03150 hypothetical protein; Provisional
Probab=98.03 E-value=6.7e-06 Score=101.58 Aligned_cols=96 Identities=23% Similarity=0.411 Sum_probs=83.9
Q ss_pred hhhhccCCCcccEEEecccccc-ccCccccCCCccceEEecCCCCc-ccccccccCCCCcEEEecCccCCCcCchhhhcc
Q 000692 573 LSDLLPKFKKLRVLSLRRYYIT-EVPISIGCLRHLRYLNFSDTKIK-CLPESVTSLLNLEILILRDCLHLLKLPSSIGNL 650 (1349)
Q Consensus 573 ~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~Lr~L~Ls~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L 650 (1349)
++..+..+++|+.|+|++|.+. .+|..++.+.+|++|+|++|.+. .+|..+++|++|++|+|++|.....+|..++.+
T Consensus 434 ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513 (623)
T ss_pred CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhc
Confidence 4556789999999999999997 78999999999999999999998 789999999999999999998888999998764
Q ss_pred -ccccEEEecCCCccccCc
Q 000692 651 -VKLLHLDIEGANLLSELP 668 (1349)
Q Consensus 651 -~~L~~L~l~~~~~~~~~p 668 (1349)
.++..+++.+|..+...|
T Consensus 514 ~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 514 LLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred cccCceEEecCCccccCCC
Confidence 577889999887544433
No 95
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.03 E-value=1e-05 Score=89.31 Aligned_cols=101 Identities=18% Similarity=0.205 Sum_probs=66.9
Q ss_pred HHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccc--cHHHHHHHHHHHccCCCCC
Q 000692 179 ARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDF--DVLRISKVILESITLSPCE 256 (1349)
Q Consensus 179 ~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~ 256 (1349)
-++++.+..-. ..+...|+|++|+||||||+++|+....+.|+.++||.+.+.. .+.++++++...+-....+
T Consensus 157 ~rvID~l~PIG-----kGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d 231 (416)
T PRK09376 157 TRIIDLIAPIG-----KGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFD 231 (416)
T ss_pred eeeeeeecccc-----cCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCC
Confidence 34556665332 3467799999999999999999998765569999999998887 7777888776433222211
Q ss_pred cCChHHH-----HHHHHHH--hcCCceEEEEeCCC
Q 000692 257 LKDLNSV-----QLKLKEA--LFKKKYLIVLDDVW 284 (1349)
Q Consensus 257 ~~~~~~~-----~~~l~~~--l~~~~~LlVlDdv~ 284 (1349)
.....+. +-...+. -.+++++|++|++.
T Consensus 232 ~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 232 EPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 1111111 1111122 25799999999993
No 96
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.02 E-value=0.00012 Score=76.11 Aligned_cols=91 Identities=15% Similarity=0.175 Sum_probs=62.0
Q ss_pred CCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecch-hHHHhhc-CCceEeCCCCChhhHHHHHHHHHhcCCCC
Q 000692 273 KKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRSV-DVALTMG-SGGYCELKLLSDDDCWSVFVKHAFESRDA 350 (1349)
Q Consensus 273 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~-~v~~~~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~ 350 (1349)
+.+-++|+||+..-..+.++.+...+....+.+.+|++|++. .+...+. ....+++.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C---C
Confidence 556789999996655566777777775545567777777643 2222222 2247899999999998888776 1 1
Q ss_pred CCchhHHHHHHHHHHHhCCChHH
Q 000692 351 GTHENLESIRQKVVEKCKGLPLA 373 (1349)
Q Consensus 351 ~~~~~~~~~~~~i~~~~~g~PLa 373 (1349)
+ .+.+..|++.++|.|..
T Consensus 170 --~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 --S---EEAAELLLALAGGSPGA 187 (188)
T ss_pred --C---HHHHHHHHHHcCCCccc
Confidence 1 34567899999998853
No 97
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.02 E-value=5.5e-06 Score=61.12 Aligned_cols=39 Identities=31% Similarity=0.440 Sum_probs=23.6
Q ss_pred cccEEEeccccccccCccccCCCccceEEecCCCCcccc
Q 000692 582 KLRVLSLRRYYITEVPISIGCLRHLRYLNFSDTKIKCLP 620 (1349)
Q Consensus 582 ~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp 620 (1349)
+|++|++++|.|+.+|..|++|++|++|++++|.|+.+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 466666666666666655666666666666666666543
No 98
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.02 E-value=0.00045 Score=71.57 Aligned_cols=181 Identities=17% Similarity=0.181 Sum_probs=103.3
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILE 248 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 248 (1349)
..|+|.++.++++.-++..... .+..+-.|.++|++|.||||||.-+++...+. + -++.+....-..-+..++.
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn-~----k~tsGp~leK~gDlaaiLt 99 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANELGVN-L----KITSGPALEKPGDLAAILT 99 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC-e----EecccccccChhhHHHHHh
Confidence 5799999998888877765443 45678899999999999999999999986543 1 1111111111111222222
Q ss_pred HccCCCCCcCChHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHHhhcc--------CCCCCCCc-----------EEEE
Q 000692 249 SITLSPCELKDLNSVQLKLKEALFKKKYLIVLDDVWSKSYDLWQALKSP--------FMVGAPDS-----------RIIV 309 (1349)
Q Consensus 249 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~--------l~~~~~gs-----------~ilv 309 (1349)
.+. +.=++.+|.+..-....-+.+..+ ....++++ -|=.
T Consensus 100 ~Le----------------------~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGA 157 (332)
T COG2255 100 NLE----------------------EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGA 157 (332)
T ss_pred cCC----------------------cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeee
Confidence 222 222444555543221111111000 00112223 2336
Q ss_pred EecchhHHHhhcC--CceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHHhh
Q 000692 310 TTRSVDVALTMGS--GGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARALGGLL 381 (1349)
Q Consensus 310 TtR~~~v~~~~~~--~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 381 (1349)
|||...+...+.. .-..+++.-+.+|-.+...+.+.--...- -++-+.+|+++..|-|--..-+-+.+
T Consensus 158 TTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i----~~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 158 TTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEI----DEEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred ccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCC----ChHHHHHHHHhccCCcHHHHHHHHHH
Confidence 8887555443332 23678999999999999988873222111 14556789999999996544444433
No 99
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.00015 Score=84.73 Aligned_cols=180 Identities=22% Similarity=0.174 Sum_probs=110.4
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCc-------------------c-cCce
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVE-------------------D-FDPK 228 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~-------------------~-f~~~ 228 (1349)
..++|.+...+.+...+..+ .-.+.+.++|+.|+||||+|+.++....-. + +..+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~-----ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLN-----KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 46899999888888877532 234578999999999999999987632100 1 1122
Q ss_pred EEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEE
Q 000692 229 AWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRII 308 (1349)
Q Consensus 229 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~il 308 (1349)
+.++.+....+.++ +.+.+.... .-..+++-++|+|++..-+......+...+-.-.+.+++|
T Consensus 88 ~eidaas~~~vddI-R~Iie~~~~----------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 88 IEIDAASNTSVDDI-KVILENSCY----------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEEecccCCCHHHH-HHHHHHHHh----------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 33333322222221 222221110 0113566689999997666566777777765545566666
Q ss_pred EEe-cchhHHHhhcC-CceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHH
Q 000692 309 VTT-RSVDVALTMGS-GGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAA 374 (1349)
Q Consensus 309 vTt-R~~~v~~~~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 374 (1349)
++| ....+...+.. ...+++++++.++..+.+.+.+...+..-+ .+....|++.++|.+-.+
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~----~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD----EESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 655 43444433322 246899999999999999887754332222 344567899999987544
No 100
>PRK05642 DNA replication initiation factor; Validated
Probab=98.02 E-value=0.0001 Score=78.92 Aligned_cols=156 Identities=16% Similarity=0.160 Sum_probs=92.8
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCc
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKKK 275 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 275 (1349)
...+.|+|..|+|||.||+++++....+ -..++|++..+ +... . ..+.+.+++-.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~-~~~v~y~~~~~------~~~~--------------~----~~~~~~~~~~d 99 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQR-GEPAVYLPLAE------LLDR--------------G----PELLDNLEQYE 99 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC-CCcEEEeeHHH------HHhh--------------h----HHHHHhhhhCC
Confidence 3678999999999999999988754322 23466776432 1111 0 11222233222
Q ss_pred eEEEEeCCCCCC-hhhHHH-hhccCCC-CCCCcEEEEEecchh---------HHHhhcCCceEeCCCCChhhHHHHHHHH
Q 000692 276 YLIVLDDVWSKS-YDLWQA-LKSPFMV-GAPDSRIIVTTRSVD---------VALTMGSGGYCELKLLSDDDCWSVFVKH 343 (1349)
Q Consensus 276 ~LlVlDdv~~~~-~~~~~~-~~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~l~~~~ 343 (1349)
++|+||+.... ...|+. +...+-. ...|..+|+|++... +..++.....+++++++.++-.+.++.+
T Consensus 100 -~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 100 -LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred -EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 67889995321 134433 2222211 234677888887422 2333444567899999999999999976
Q ss_pred HhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHHhh
Q 000692 344 AFESRDAGTHENLESIRQKVVEKCKGLPLAARALGGLL 381 (1349)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 381 (1349)
+.... ..-+ +++..-|++.+.|..-++..+-..|
T Consensus 179 a~~~~-~~l~---~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 179 ASRRG-LHLT---DEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHcC-CCCC---HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 64332 1111 4666778888888876665544443
No 101
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=0.00016 Score=86.94 Aligned_cols=195 Identities=12% Similarity=0.119 Sum_probs=110.5
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc---cCceEEEEecccccHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED---FDPKAWVCVSDDFDVLRISKV 245 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~---f~~~~wv~~~~~~~~~~~~~~ 245 (1349)
..++|.+..++.+..++... .-...+.++|..|+||||+|+.+++...-.. .....+ .........+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~-----rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQ-----RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHH
Confidence 45889999889998888643 2346778999999999999999866432110 010000 01111111122
Q ss_pred HHHHcc-----CCCCCcCChHHHHHHHHHH----hcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEe-cchh
Q 000692 246 ILESIT-----LSPCELKDLNSVQLKLKEA----LFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTT-RSVD 315 (1349)
Q Consensus 246 i~~~l~-----~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTt-R~~~ 315 (1349)
|...-. ........+++..+.+... ..++.-++|+|+|+.-+...+..+...+-.-....++|++| ....
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 211000 0000111122222211111 12445589999998777777888877775544556666555 4344
Q ss_pred HHHhhc-CCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHH
Q 000692 316 VALTMG-SGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARA 376 (1349)
Q Consensus 316 v~~~~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 376 (1349)
+...+. ....+++++++.++..+.+.+.+...+...+ .+....|++.++|.+--+..
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie----~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE----PQALRLLARAARGSMRDALS 224 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 432222 2357899999999999999887644332222 34456788999997754443
No 102
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.01 E-value=8.9e-05 Score=91.47 Aligned_cols=169 Identities=21% Similarity=0.213 Sum_probs=95.4
Q ss_pred CccccchhhHH---HHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHH
Q 000692 169 PAVYGRDEDKA---RVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKV 245 (1349)
Q Consensus 169 ~~~~Gr~~~~~---~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 245 (1349)
..|+|++..+. .+...+.. .....+.++|++|+||||+|+.+++..... |. .+++.. ....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~-f~---~lna~~-~~i~----- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANHTRAH-FS---SLNAVL-AGVK----- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHHhcCc-ce---eehhhh-hhhH-----
Confidence 35889888764 45455532 234567899999999999999999864322 31 111110 0000
Q ss_pred HHHHccCCCCCcCChHHHHHHHHHHh--cCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEE--ecchh--HHHh
Q 000692 246 ILESITLSPCELKDLNSVQLKLKEAL--FKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVT--TRSVD--VALT 319 (1349)
Q Consensus 246 i~~~l~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvT--tR~~~--v~~~ 319 (1349)
+..+......+.+ .+++.++|+||++.-....++.+...+. .|..++++ |.+.. +...
T Consensus 92 -------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~a 155 (725)
T PRK13341 92 -------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKA 155 (725)
T ss_pred -------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhH
Confidence 1111111111111 2467899999997655555666654432 35555553 33321 2221
Q ss_pred hc-CCceEeCCCCChhhHHHHHHHHHhc------CCCCCCchhHHHHHHHHHHHhCCChH
Q 000692 320 MG-SGGYCELKLLSDDDCWSVFVKHAFE------SRDAGTHENLESIRQKVVEKCKGLPL 372 (1349)
Q Consensus 320 ~~-~~~~~~l~~L~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~g~PL 372 (1349)
+. ....+.+++++.++...++.+.+.. .....- -.+....|++.+.|.--
T Consensus 156 L~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I---~deaL~~La~~s~GD~R 212 (725)
T PRK13341 156 LVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDL---EPEAEKHLVDVANGDAR 212 (725)
T ss_pred hhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCC---CHHHHHHHHHhCCCCHH
Confidence 11 1346899999999999999877631 111111 13445677888888643
No 103
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.01 E-value=0.00027 Score=75.68 Aligned_cols=195 Identities=15% Similarity=0.100 Sum_probs=120.4
Q ss_pred hhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-----cCceEEEEecccccHHHHHHHHHHHc
Q 000692 176 EDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-----FDPKAWVCVSDDFDVLRISKVILESI 250 (1349)
Q Consensus 176 ~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~~i~~~l 250 (1349)
+.++++.+++..+ ...+..-+.|+|..|+|||++++++...+-... --.|+.|.+...++...+...|+.++
T Consensus 44 ~~L~~L~~Ll~~P---~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 44 EALDRLEELLEYP---KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL 120 (302)
T ss_pred HHHHHHHHHHhCC---cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh
Confidence 3455566656543 345677899999999999999999987653221 12577888888999999999999999
Q ss_pred cCCCCCcCChHHHHHHHHHHhcC-CceEEEEeCCCCC------ChhhHHHhhccCCCCCCCcEEEEEecchhHHHhhc--
Q 000692 251 TLSPCELKDLNSVQLKLKEALFK-KKYLIVLDDVWSK------SYDLWQALKSPFMVGAPDSRIIVTTRSVDVALTMG-- 321 (1349)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~------~~~~~~~~~~~l~~~~~gs~ilvTtR~~~v~~~~~-- 321 (1349)
+.+.................++. +-=+||+|++.+. .+.+.-.....+...-.-+-|.|-|+...-+-...
T Consensus 121 gaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~Q 200 (302)
T PF05621_consen 121 GAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQ 200 (302)
T ss_pred CcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHH
Confidence 98876666666666555566654 4458899999552 11122223333433334455666666432221111
Q ss_pred ---CCceEeCCCCChhhHHH-HHHHHHh--cCCCCCCchhHHHHHHHHHHHhCCChHHH
Q 000692 322 ---SGGYCELKLLSDDDCWS-VFVKHAF--ESRDAGTHENLESIRQKVVEKCKGLPLAA 374 (1349)
Q Consensus 322 ---~~~~~~l~~L~~~~~~~-l~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~g~PLal 374 (1349)
-...+.++....++-.. |+..... .-..... -...++++.|...++|+.=-+
T Consensus 201 La~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~-l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 201 LASRFEPFELPRWELDEEFRRLLASFERALPLRKPSN-LASPELARRIHERSEGLIGEL 258 (302)
T ss_pred HHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHHHHcCCchHHH
Confidence 11356777776655444 4432221 1111111 234678899999999987444
No 104
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.00 E-value=0.00018 Score=81.34 Aligned_cols=196 Identities=17% Similarity=0.140 Sum_probs=112.7
Q ss_pred CCccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc---cCceEEEEecccccHHHHHH
Q 000692 168 EPAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED---FDPKAWVCVSDDFDVLRISK 244 (1349)
Q Consensus 168 ~~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~---f~~~~wv~~~~~~~~~~~~~ 244 (1349)
-..++|.++..+.+...+..+. -...+.|+|..|+||||+|..+++..-... +.... ...........+
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~ 93 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWR 93 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHH
Confidence 4568999999999999986432 346789999999999999999877643210 11110 000111111233
Q ss_pred HHHHH-------ccCCC-C------CcCChHHHHHHHHHHh-----cCCceEEEEeCCCCCChhhHHHhhccCCCCCCCc
Q 000692 245 VILES-------ITLSP-C------ELKDLNSVQLKLKEAL-----FKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDS 305 (1349)
Q Consensus 245 ~i~~~-------l~~~~-~------~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs 305 (1349)
.+... +..+. . ..-.+++. +.+.+.+ .+++-++|+|++..-+......+...+.....+.
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 33222 11000 0 01112332 2333333 3566799999997766666666666554433444
Q ss_pred EE-EEEecchhHHHhhcC-CceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHHH
Q 000692 306 RI-IVTTRSVDVALTMGS-GGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARALG 378 (1349)
Q Consensus 306 ~i-lvTtR~~~v~~~~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 378 (1349)
.+ ++|++...+...+.. -..+++.+++.++..+++........ . ..+....|++.++|.|.....+.
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~----~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--S----DGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--C----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 54 444444333322221 24789999999999999987432111 1 13345678999999998665444
No 105
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00013 Score=85.18 Aligned_cols=196 Identities=14% Similarity=0.124 Sum_probs=110.3
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-cCceEEEE-ecccccHHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-FDPKAWVC-VSDDFDVLRISKVI 246 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~~~~wv~-~~~~~~~~~~~~~i 246 (1349)
..++|.+...+.+..++..+ .-...+.++|+.|+||||+|+.+++...-.. ++...|.. ...+...-...+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~-----~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMG-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhC-----CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 46889999888888888532 2245688999999999999999887543211 11111110 00111111111222
Q ss_pred HHHccCC-----CCCcCChHHHHHHHHHHh-----cCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEe-cchh
Q 000692 247 LESITLS-----PCELKDLNSVQLKLKEAL-----FKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTT-RSVD 315 (1349)
Q Consensus 247 ~~~l~~~-----~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTt-R~~~ 315 (1349)
....... .......++..+ +.+.+ .+++-++|+|++..-....++.+...+....+.+.+|++| +...
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHH
Confidence 1111000 001111233222 22222 3456689999997665567777777776555566666555 4344
Q ss_pred HHHhhc-CCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHH
Q 000692 316 VALTMG-SGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAA 374 (1349)
Q Consensus 316 v~~~~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 374 (1349)
+...+. ....++++++++++..+.+...+...+..- -.+.+..|++.++|.+--+
T Consensus 170 l~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i----~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 170 IPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISV----DADALQLIGRKAQGSMRDA 225 (397)
T ss_pred hHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 433221 123688999999999888887764322211 1455677899999987543
No 106
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00016 Score=86.06 Aligned_cols=182 Identities=15% Similarity=0.064 Sum_probs=108.3
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-c-------------------Cce
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-F-------------------DPK 228 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f-------------------~~~ 228 (1349)
..++|.+..++.+..++.... -...+.++|+.|+||||+|+.+++...-.. . .-+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 458999999999999986432 345678999999999999999887542111 1 112
Q ss_pred EEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEE
Q 000692 229 AWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRII 308 (1349)
Q Consensus 229 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~il 308 (1349)
+.++.+....++++ +.+++.+.. .-..++.-++|+|+|..-+......+...+-.....+++|
T Consensus 91 ~eidaas~~~v~~i-R~l~~~~~~----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fI 153 (509)
T PRK14958 91 FEVDAASRTKVEDT-RELLDNIPY----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFI 153 (509)
T ss_pred EEEcccccCCHHHH-HHHHHHHhh----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 22222222222211 122221110 0113566689999997766667777776665544566666
Q ss_pred EEecc-hhHHHhhc-CCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHH
Q 000692 309 VTTRS-VDVALTMG-SGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARA 376 (1349)
Q Consensus 309 vTtR~-~~v~~~~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 376 (1349)
++|.+ ..+...+. ....+++++++.++....+.+.+...+...+ .+....|++.++|.+--+..
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~----~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE----NAALDLLARAANGSVRDALS 219 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHH
Confidence 65543 33332221 1246889999999988877766643322211 23346678899998754433
No 107
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=1.4e-07 Score=96.49 Aligned_cols=106 Identities=14% Similarity=0.171 Sum_probs=56.3
Q ss_pred ccceEEEcccCCcc-ccccccCccccccceEEeccCCcccccccccCCCCcceEEecCCCCCcccc--ccCCCCCCcceE
Q 000692 1129 TLKRLDIQMCSNFM-VLTSECQLPEVLEELKIVSCPKLESIAETFFDNARLRSIQIKDCDNLRSIP--KGLHNLSYLHCI 1205 (1349)
Q Consensus 1129 ~L~~L~l~~~~~l~-~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp--~~~~~l~~L~~L 1205 (1349)
.|+.|++++..... .+...+.-+..|+.|.|.++..-..+...+....+|+.|+++.|..+++.. --+.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 35555555432221 112223344556666666654444444455555677777777777666542 225677788888
Q ss_pred EeecCCCCcccCCC---CCcCcccEEEeccCc
Q 000692 1206 SIEHCQNLVSFPED---LLPGAIIEFSVQNCA 1234 (1349)
Q Consensus 1206 ~l~~c~~l~~lp~~---~~~~~L~~L~l~~c~ 1234 (1349)
+|+.|...+..... -..+.|+.|+++||-
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r 297 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYR 297 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhH
Confidence 88887543332111 112456666666653
No 108
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00024 Score=85.32 Aligned_cols=186 Identities=16% Similarity=0.101 Sum_probs=108.1
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc--------------------cCce
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED--------------------FDPK 228 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~--------------------f~~~ 228 (1349)
..++|.+..++.+..++.... -...+.++|+.|+||||+|+.+++...-.. |...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 358899999999998886422 345678999999999999999876542110 1112
Q ss_pred EEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEE
Q 000692 229 AWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRII 308 (1349)
Q Consensus 229 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~il 308 (1349)
+++..+....+. ..+++.+.+.. .-..+++-++|+|++..-.......+...+-.....+.+|
T Consensus 91 ~ei~~~~~~~vd-~ir~l~~~~~~----------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fI 153 (527)
T PRK14969 91 IEVDAASNTQVD-AMRELLDNAQY----------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFI 153 (527)
T ss_pred eEeeccccCCHH-HHHHHHHHHhh----------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEE
Confidence 222211111111 11122211110 0113566799999997666556666766665444556666
Q ss_pred EEecc-hhHHHhhc-CCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChH-HHHHHHHh
Q 000692 309 VTTRS-VDVALTMG-SGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPL-AARALGGL 380 (1349)
Q Consensus 309 vTtR~-~~v~~~~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~~~~ 380 (1349)
++|.+ ..+...+. ....+++++++.++..+.+.+.+...+...+ .+..+.|++.++|.+- |+..+-.+
T Consensus 154 L~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~----~~al~~la~~s~Gslr~al~lldqa 224 (527)
T PRK14969 154 LATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFD----ATALQLLARAAAGSMRDALSLLDQA 224 (527)
T ss_pred EEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 55543 33221111 1146899999999999888776643322111 3344678999999775 44444333
No 109
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.99 E-value=1.7e-06 Score=88.62 Aligned_cols=107 Identities=26% Similarity=0.319 Sum_probs=90.7
Q ss_pred hhhhhccCCCcccEEEeccccccccCccccCCCccceEEecCCCCcccccccccCCCCcEEEecCccCCCcCchhhhccc
Q 000692 572 VLSDLLPKFKKLRVLSLRRYYITEVPISIGCLRHLRYLNFSDTKIKCLPESVTSLLNLEILILRDCLHLLKLPSSIGNLV 651 (1349)
Q Consensus 572 ~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~ 651 (1349)
.+....+-.+.+|+|++++|.|..+-. +..|.+|..||||+|.++++-..-.+|.|.++|.|++| .+..+ +++++|.
T Consensus 298 ~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N-~iE~L-SGL~KLY 374 (490)
T KOG1259|consen 298 QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN-KIETL-SGLRKLY 374 (490)
T ss_pred hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh-hHhhh-hhhHhhh
Confidence 344556678999999999999998854 88999999999999999988776689999999999998 66666 4699999
Q ss_pred cccEEEecCCCccccCc--cccccCcCCCCCCe
Q 000692 652 KLLHLDIEGANLLSELP--LRMKELKCLQTLTN 682 (1349)
Q Consensus 652 ~L~~L~l~~~~~~~~~p--~~i~~L~~L~~L~~ 682 (1349)
+|..||+++|+ +..+. ..||+|+.|+++..
T Consensus 375 SLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L 406 (490)
T KOG1259|consen 375 SLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRL 406 (490)
T ss_pred hheeccccccc-hhhHHHhcccccccHHHHHhh
Confidence 99999999998 66664 46999999998854
No 110
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.98 E-value=8.6e-05 Score=78.74 Aligned_cols=158 Identities=16% Similarity=0.139 Sum_probs=99.1
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcC
Q 000692 194 SSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFK 273 (1349)
Q Consensus 194 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 273 (1349)
.+..-+.+||++|+||||||+.++...+... ..||..+....-..-.+.|.++... ...+.+
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S---yrfvelSAt~a~t~dvR~ife~aq~---------------~~~l~k 221 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS---YRFVELSATNAKTNDVRDIFEQAQN---------------EKSLTK 221 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc---eEEEEEeccccchHHHHHHHHHHHH---------------HHhhhc
Confidence 3566788999999999999999998765442 5567776655444445555554221 123567
Q ss_pred CceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEE--EecchhHHH---hhcCCceEeCCCCChhhHHHHHHHHHh---
Q 000692 274 KKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIV--TTRSVDVAL---TMGSGGYCELKLLSDDDCWSVFVKHAF--- 345 (1349)
Q Consensus 274 ~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv--TtR~~~v~~---~~~~~~~~~l~~L~~~~~~~l~~~~~~--- 345 (1349)
+|.+|.+|.|..-...+-+ ..+|.-.+|.-++| ||.++.... .+..-.++.++.|..++-..++.+.+.
T Consensus 222 rkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~ 298 (554)
T KOG2028|consen 222 RKTILFIDEIHRFNKSQQD---TFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLG 298 (554)
T ss_pred ceeEEEeHHhhhhhhhhhh---cccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhc
Confidence 8999999999553322222 23555667887776 666654321 122235789999999999998887442
Q ss_pred cCCC---CCCch---hHHHHHHHHHHHhCCChH
Q 000692 346 ESRD---AGTHE---NLESIRQKVVEKCKGLPL 372 (1349)
Q Consensus 346 ~~~~---~~~~~---~~~~~~~~i~~~~~g~PL 372 (1349)
..+. .-..+ -...+.+-++..|+|-.-
T Consensus 299 dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 299 DSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred cccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 1111 11111 124555677888888653
No 111
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.00029 Score=85.12 Aligned_cols=196 Identities=14% Similarity=0.112 Sum_probs=112.9
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-cC--ceEEEEecccccHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-FD--PKAWVCVSDDFDVLRISKV 245 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~--~~~wv~~~~~~~~~~~~~~ 245 (1349)
..++|.+..++.+..++..+ .-...+.++|+.|+||||+|+.+++...-.. .. ...+-.+.. -...+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~g-----ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~----c~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETG-----RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV----GEHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc----cHHHHH
Confidence 46899999999999988643 2345789999999999999999987643211 10 000101111 111122
Q ss_pred HHHHccCC-----CCCcCChHH---HHHHHHH-HhcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEe-cchh
Q 000692 246 ILESITLS-----PCELKDLNS---VQLKLKE-ALFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTT-RSVD 315 (1349)
Q Consensus 246 i~~~l~~~-----~~~~~~~~~---~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTt-R~~~ 315 (1349)
|...-+.. ......+++ +...+.. -..+++-++|+|++..-.......+...+-.-..++++|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 22211110 001112222 2222211 123456689999997666566677776665444566666555 4344
Q ss_pred HHHhhc-CCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHH
Q 000692 316 VALTMG-SGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARAL 377 (1349)
Q Consensus 316 v~~~~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 377 (1349)
+...+. ....++++.++.++....+.+.+...+..-+ .+....|++.++|.+.-+...
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~----~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE----DEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 333222 1246899999999999999887743332221 345577899999998665443
No 112
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.91 E-value=8.5e-06 Score=96.43 Aligned_cols=96 Identities=29% Similarity=0.358 Sum_probs=82.7
Q ss_pred cEEEeccccccccCccccCCCccceEEecCCCCcccccccccCC-CCcEEEecCccCCCcCchhhhccccccEEEecCCC
Q 000692 584 RVLSLRRYYITEVPISIGCLRHLRYLNFSDTKIKCLPESVTSLL-NLEILILRDCLHLLKLPSSIGNLVKLLHLDIEGAN 662 (1349)
Q Consensus 584 r~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~-~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 662 (1349)
..|++..+.+...+..+..+..+..|++.+|.++.+|.....+. +|+.|++++| .+..+|..++.+++|+.|++++|.
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 96 PSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred ceeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCch
Confidence 46888888876555667777999999999999999999999996 9999999998 789998889999999999999998
Q ss_pred ccccCccccccCcCCCCCC
Q 000692 663 LLSELPLRMKELKCLQTLT 681 (1349)
Q Consensus 663 ~~~~~p~~i~~L~~L~~L~ 681 (1349)
+..+|...+.+++|+.|.
T Consensus 175 -l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 175 -LSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred -hhhhhhhhhhhhhhhhee
Confidence 788887776777777774
No 113
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.90 E-value=0.00024 Score=83.53 Aligned_cols=170 Identities=13% Similarity=0.105 Sum_probs=102.2
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcc-cCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVED-FDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKK 274 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 274 (1349)
...+.|+|..|+|||+|++++++...... -..+++++ ..++...+...+.... .....+.+.++ .
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~-~ 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEIC-Q 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhc-c
Confidence 35689999999999999999988543221 12344444 3445566665554210 11223333333 3
Q ss_pred ceEEEEeCCCCCCh-hhH-HHhhccCCC-CCCCcEEEEEecc---------hhHHHhhcCCceEeCCCCChhhHHHHHHH
Q 000692 275 KYLIVLDDVWSKSY-DLW-QALKSPFMV-GAPDSRIIVTTRS---------VDVALTMGSGGYCELKLLSDDDCWSVFVK 342 (1349)
Q Consensus 275 ~~LlVlDdv~~~~~-~~~-~~~~~~l~~-~~~gs~ilvTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~l~~~ 342 (1349)
.-+||+||+..... ..+ +.+...+-. ...|..||+|+.. +++..++...-.+.+++++.++-.+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 45888999954321 122 222222211 1244578888763 23444555566788999999999999999
Q ss_pred HHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHHhh
Q 000692 343 HAFESRDAGTHENLESIRQKVVEKCKGLPLAARALGGLL 381 (1349)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 381 (1349)
++...+-. ..--+++..-|++.++|.|-.+..+...+
T Consensus 287 ~~~~~gl~--~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 287 EIKNQNIK--QEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHhcCCC--CCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 88432210 01225667889999999998776655443
No 114
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.90 E-value=0.00058 Score=73.82 Aligned_cols=169 Identities=17% Similarity=0.206 Sum_probs=105.0
Q ss_pred CCccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHH
Q 000692 168 EPAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVIL 247 (1349)
Q Consensus 168 ~~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 247 (1349)
.+.|.+|+.++..+..++.... ..-+.+|.|+|-.|.|||.+.+++++.... ..+|+++-+.++...++.+|+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~---~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~----~~vw~n~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNS---CTIPSIVHIYGHSGTGKTYLVRQLLRKLNL----ENVWLNCVECFTYAILLEKIL 77 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCC---cccceeEEEeccCCCchhHHHHHHHhhcCC----cceeeehHHhccHHHHHHHHH
Confidence 4678899999999998885332 124567799999999999999999987643 368999999999999999999
Q ss_pred HHccCCCCCcC-------ChHHHHHHHHH--Hhc--CCceEEEEeCCCCCC---hhhHHHhhccCCCCCCCcEEEEEecc
Q 000692 248 ESITLSPCELK-------DLNSVQLKLKE--ALF--KKKYLIVLDDVWSKS---YDLWQALKSPFMVGAPDSRIIVTTRS 313 (1349)
Q Consensus 248 ~~l~~~~~~~~-------~~~~~~~~l~~--~l~--~~~~LlVlDdv~~~~---~~~~~~~~~~l~~~~~gs~ilvTtR~ 313 (1349)
.+.+..+.+.. ...+....+.+ ... ++.++||||+++.-. ..-+..+..-.--.....-+|+++..
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~ 157 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAP 157 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEecc
Confidence 99852222111 11222223333 122 468999999994321 01111111100001122334444443
Q ss_pred hhHHHh---hcCCc--eEeCCCCChhhHHHHHHHH
Q 000692 314 VDVALT---MGSGG--YCELKLLSDDDCWSVFVKH 343 (1349)
Q Consensus 314 ~~v~~~---~~~~~--~~~l~~L~~~~~~~l~~~~ 343 (1349)
...... +++.. ++..+.-+.+|...++.+.
T Consensus 158 ~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 158 SCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 222222 34433 5778889999999988654
No 115
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=0.00058 Score=82.90 Aligned_cols=193 Identities=15% Similarity=0.100 Sum_probs=107.7
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILE 248 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 248 (1349)
..++|.+..++.+..++... .-.+.+.++|+.|+||||+|+.+++..--.... ..+-.+.. ......
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~-----rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~-~~~~pC~~-------C~~~~~ 84 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSN-----KISHAYLFSGPRGTGKTSVAKIFANALNCSHKT-DLLEPCQE-------CIENVN 84 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccccC-CCCCchhH-------HHHhhc
Confidence 35889999999999988643 234677899999999999999987653211100 00000000 000000
Q ss_pred -H---ccCCC---CCcCChHHHHHHHHHH-hcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEE-EEecchhHHHh
Q 000692 249 -S---ITLSP---CELKDLNSVQLKLKEA-LFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRII-VTTRSVDVALT 319 (1349)
Q Consensus 249 -~---l~~~~---~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~il-vTtR~~~v~~~ 319 (1349)
. +.... ....++.++.+.+... ..+++-++|+|++..-....+..+...+-.......+| +|++...+...
T Consensus 85 ~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred CCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 0 00000 0011122222222211 23566799999997666567777776665433444544 55555454433
Q ss_pred hc-CCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChH-HHHHHH
Q 000692 320 MG-SGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPL-AARALG 378 (1349)
Q Consensus 320 ~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~~ 378 (1349)
+. ....+++.+++.++..+.+...+...+...+ .+.++.|++.++|.+- |+..+-
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id----~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKENISYE----KNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 22 2247899999999999888876643322111 3345678999999764 444333
No 116
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.85 E-value=0.00012 Score=84.62 Aligned_cols=178 Identities=16% Similarity=0.158 Sum_probs=99.8
Q ss_pred CccccchhhHHHHHHHHhccCCC-------CCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPN-------DDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLR 241 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~-------~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 241 (1349)
..+.|+++.++++.+.+...-.. +-..++.+.++|++|+|||++|+++++..... | +.+.. ..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~-~-----~~v~~----~~ 191 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-F-----IRVVG----SE 191 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC-E-----Eecch----HH
Confidence 46899999999999887532110 11235668999999999999999999875432 2 22211 11
Q ss_pred HHHHHHHHccCCCCCcCChHHHHHHHHH-HhcCCceEEEEeCCCCC-----------Chh---hHHHhhccCC--CCCCC
Q 000692 242 ISKVILESITLSPCELKDLNSVQLKLKE-ALFKKKYLIVLDDVWSK-----------SYD---LWQALKSPFM--VGAPD 304 (1349)
Q Consensus 242 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~-----------~~~---~~~~~~~~l~--~~~~g 304 (1349)
+.... ++ +.......+.+ .-...+.+|++|+++.- +.. .+..+...+. ....+
T Consensus 192 l~~~~---~g-------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~ 261 (364)
T TIGR01242 192 LVRKY---IG-------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGN 261 (364)
T ss_pred HHHHh---hh-------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCC
Confidence 11110 00 11111222222 22346789999998542 111 1222222221 12346
Q ss_pred cEEEEEecchhHHH-hh----cCCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCCh
Q 000692 305 SRIIVTTRSVDVAL-TM----GSGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLP 371 (1349)
Q Consensus 305 s~ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 371 (1349)
.+||.||....... .+ .....+++...+.++..++|..++.+.... ..... ..+++.+.|..
T Consensus 262 v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~----~~la~~t~g~s 328 (364)
T TIGR01242 262 VKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDL----EAIAKMTEGAS 328 (364)
T ss_pred EEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCH----HHHHHHcCCCC
Confidence 77888887543221 11 123468999999999999999887543222 11223 45577777654
No 117
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00061 Score=79.31 Aligned_cols=180 Identities=16% Similarity=0.142 Sum_probs=104.0
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCc-------ccCce-EEEEecccccHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVE-------DFDPK-AWVCVSDDFDVL 240 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~-------~f~~~-~wv~~~~~~~~~ 240 (1349)
..++|.+...+.+...+..+ .-.+.+.++|+.|+||||+|+.+++..... .|... +-+.........
T Consensus 17 ~~iig~~~~~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 91 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVD 91 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHH
Confidence 35789999999999988642 234688999999999999999987754321 12111 111111111111
Q ss_pred HHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEe-cchhHHHh
Q 000692 241 RISKVILESITLSPCELKDLNSVQLKLKEALFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTT-RSVDVALT 319 (1349)
Q Consensus 241 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTt-R~~~v~~~ 319 (1349)
..+++.+.+... -..+++-++|+|++..-....+..+...+......+.+|+++ +...+...
T Consensus 92 -~i~~l~~~~~~~----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 92 -DIRNLIDQVRIP----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred -HHHHHHHHHhhc----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 111222211100 112455689999996554455666655554333445555555 33333222
Q ss_pred h-cCCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHH
Q 000692 320 M-GSGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAA 374 (1349)
Q Consensus 320 ~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 374 (1349)
+ .....++.+++++++....+.+.+...+..-+ .+.++.+++.++|.+-.+
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~----~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE----DDALHIIAQKADGALRDA 206 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhCCCCHHHH
Confidence 2 12246899999999999988887754332211 345677788899876543
No 118
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.83 E-value=3.7e-05 Score=85.59 Aligned_cols=90 Identities=20% Similarity=0.146 Sum_probs=62.9
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEeccc--ccHHHHHHHHHHHccCCCCCcCChH------HHHHH
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDD--FDVLRISKVILESITLSPCELKDLN------SVQLK 266 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~ 266 (1349)
..+.++|+|.+|+|||||++.+++....+.|+..+||.+.+. .++.++++.+...+-....+..... ...+.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 346889999999999999999999876555998999999866 6888999998654433322211111 11111
Q ss_pred HHHH-hcCCceEEEEeCCC
Q 000692 267 LKEA-LFKKKYLIVLDDVW 284 (1349)
Q Consensus 267 l~~~-l~~~~~LlVlDdv~ 284 (1349)
.... -.+++++|++|++.
T Consensus 247 Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHcCCCeEEEEEChh
Confidence 1111 25899999999994
No 119
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.82 E-value=0.00053 Score=85.89 Aligned_cols=191 Identities=10% Similarity=0.044 Sum_probs=109.0
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-cCceEEEEecccccHHHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-FDPKAWVCVSDDFDVLRISKVIL 247 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~ 247 (1349)
..++|.+..++.|..++.... -...+.++|..|+||||+|+.+++...-.. .+.. .+.. -...+.|.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~---pCg~----C~sC~~~~ 82 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTST---PCGE----CDSCVALA 82 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC---CCcc----cHHHHHHH
Confidence 358999999999999986432 235678999999999999999877643111 1000 0000 00011111
Q ss_pred HH-------ccCCCCCcCChHHH---HHHHH-HHhcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEec-chh
Q 000692 248 ES-------ITLSPCELKDLNSV---QLKLK-EALFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTR-SVD 315 (1349)
Q Consensus 248 ~~-------l~~~~~~~~~~~~~---~~~l~-~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR-~~~ 315 (1349)
.. +.........+++. .+.+. .-..+++-++|||+++.-....+..+...+-.-...+.+|++|. ...
T Consensus 83 ~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 83 PGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred cCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 00 00000000112222 11111 11235566889999977776777777777765545666665554 344
Q ss_pred HHHhhcC-CceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHH
Q 000692 316 VALTMGS-GGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAAR 375 (1349)
Q Consensus 316 v~~~~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 375 (1349)
+...+.. ...|++..++.++..+.+.+.+...+...+ ......|++.++|.+..+.
T Consensus 163 Ll~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id----~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 163 VIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVE----PGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred hhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 4433322 347899999999998888776633222111 3344668999999885443
No 120
>PRK06620 hypothetical protein; Validated
Probab=97.82 E-value=0.00092 Score=70.23 Aligned_cols=137 Identities=16% Similarity=0.028 Sum_probs=82.0
Q ss_pred EEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCce
Q 000692 197 RLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKKKY 276 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 276 (1349)
+.+.|+|++|+|||+|++.+++.... .++. ..+.. + +.. +..-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~------~~~~--~~~~~---------------------~-------~~~-~~~d 87 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA------YIIK--DIFFN---------------------E-------EIL-EKYN 87 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC------EEcc--hhhhc---------------------h-------hHH-hcCC
Confidence 57899999999999999998776431 1111 00000 0 011 1235
Q ss_pred EEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecch-------hHHHhhcCCceEeCCCCChhhHHHHHHHHHhcCCC
Q 000692 277 LIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRSV-------DVALTMGSGGYCELKLLSDDDCWSVFVKHAFESRD 349 (1349)
Q Consensus 277 LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~-------~v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~ 349 (1349)
++++||+..-.....-.+...+. ..|..||+|++.. +...++.....++++++++++-..++.+.+... .
T Consensus 88 ~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~-~ 164 (214)
T PRK06620 88 AFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS-S 164 (214)
T ss_pred EEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc-C
Confidence 78899995322112222222222 3567899998743 233445555689999999999888888877422 1
Q ss_pred CCCchhHHHHHHHHHHHhCCChHHHHH
Q 000692 350 AGTHENLESIRQKVVEKCKGLPLAARA 376 (1349)
Q Consensus 350 ~~~~~~~~~~~~~i~~~~~g~PLal~~ 376 (1349)
..- -+++.+-|++.+.|.--.+.-
T Consensus 165 l~l---~~ev~~~L~~~~~~d~r~l~~ 188 (214)
T PRK06620 165 VTI---SRQIIDFLLVNLPREYSKIIE 188 (214)
T ss_pred CCC---CHHHHHHHHHHccCCHHHHHH
Confidence 111 145667788888876655443
No 121
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=0.0011 Score=78.24 Aligned_cols=193 Identities=12% Similarity=0.099 Sum_probs=109.3
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-cCceEEEEecccccHHHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-FDPKAWVCVSDDFDVLRISKVIL 247 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~ 247 (1349)
..++|.+...+.+...+... .-..+..++|..|+||||+|+.+++..--.. .+. .+...-...+.+.
T Consensus 14 deiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~-------~pC~~C~~C~~~~ 81 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSS-------TPCDTCIQCQSAL 81 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCC-------CCCcccHHHHHHh
Confidence 45899999989998888532 2345778999999999999998876532110 100 0000000001111
Q ss_pred HHccC-----CCCCcCChHHHHHHHHHH----hcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecch-hHH
Q 000692 248 ESITL-----SPCELKDLNSVQLKLKEA----LFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRSV-DVA 317 (1349)
Q Consensus 248 ~~l~~-----~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~-~v~ 317 (1349)
..... ........++..+.+... ..+++-++|+|++..-..+....+...+-...+.+++|++|.+. .+.
T Consensus 82 ~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~ 161 (535)
T PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLP 161 (535)
T ss_pred hcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCc
Confidence 00000 000001122222222110 12456689999997766666777766665444567777666553 222
Q ss_pred Hhhc-CCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHH
Q 000692 318 LTMG-SGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARAL 377 (1349)
Q Consensus 318 ~~~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 377 (1349)
..+. ....+++.+++.++..+.+.+.+...+..-+ .+.++.|++.++|.+--+..+
T Consensus 162 ~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~----~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 162 ATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE----PEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred hHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHH
Confidence 1111 1247899999999999988877643332211 345577899999988555443
No 122
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.81 E-value=2.4e-05 Score=57.80 Aligned_cols=40 Identities=30% Similarity=0.483 Sum_probs=29.5
Q ss_pred CccceEEecCCCCcccccccccCCCCcEEEecCccCCCcCc
Q 000692 604 RHLRYLNFSDTKIKCLPESVTSLLNLEILILRDCLHLLKLP 644 (1349)
Q Consensus 604 ~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp 644 (1349)
++|++|++++|.|+.+|..+++|++|++|++++| .+..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 4688888888888888887888888888888887 455443
No 123
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00036 Score=85.53 Aligned_cols=197 Identities=15% Similarity=0.132 Sum_probs=111.5
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILE 248 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 248 (1349)
..++|.+..++.+..++... .-...+.++|..|+||||+|+.+++.......+.. ..........+.+..
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~-----~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~-----~~~c~~c~~c~~i~~ 85 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEG-----RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK-----GRPCGTCEMCRAIAE 85 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-----CCCCccCHHHHHHhc
Confidence 46899999999998888642 23456789999999999999999865421110000 001111122233322
Q ss_pred HccCC-----CCCcCChHHH---HHHHHH-HhcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecc-hhHHH
Q 000692 249 SITLS-----PCELKDLNSV---QLKLKE-ALFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRS-VDVAL 318 (1349)
Q Consensus 249 ~l~~~-----~~~~~~~~~~---~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~-~~v~~ 318 (1349)
..+.. .......++. ...+.. -..+++-++|+|++..-..+..+.+...+-.....+.+|+++.+ ..+..
T Consensus 86 ~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~ 165 (585)
T PRK14950 86 GSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPA 165 (585)
T ss_pred CCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhH
Confidence 21110 0011112222 111111 01245678999999655555566676666544455666666543 33332
Q ss_pred hhc-CCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHH
Q 000692 319 TMG-SGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARALGG 379 (1349)
Q Consensus 319 ~~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~ 379 (1349)
.+. ....+.++.++.++....+.+.+...+..-+ .+.+..|++.++|.+..+...-.
T Consensus 166 tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~----~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 166 TILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE----PGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred HHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 221 2246889999999999888877643332211 34567789999999866554433
No 124
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00092 Score=81.00 Aligned_cols=200 Identities=14% Similarity=0.107 Sum_probs=110.5
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-cCceEEEE-ecccccHHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-FDPKAWVC-VSDDFDVLRISKVI 246 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~~~~wv~-~~~~~~~~~~~~~i 246 (1349)
..++|.+..+..+...+..+ .-...+.++|+.|+||||+|+.+++...-.. ++...|.. +......-...+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~-----ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMD-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 45889999999988888532 2345688999999999999999877543211 21111111 00111111122222
Q ss_pred HHHccCC-----CCCcCChHHHHHHHHHH----hcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEe-cchhH
Q 000692 247 LESITLS-----PCELKDLNSVQLKLKEA----LFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTT-RSVDV 316 (1349)
Q Consensus 247 ~~~l~~~-----~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTt-R~~~v 316 (1349)
...-... .......+++...+... ..+++-++|+|+++.-.....+.+...+-.-...+.+|++| +...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 1111000 00111123332222111 23556689999997665556677777765444455555444 44444
Q ss_pred HHhh-cCCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChH-HHHHH
Q 000692 317 ALTM-GSGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPL-AARAL 377 (1349)
Q Consensus 317 ~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~ 377 (1349)
...+ .....+++.+++.++....+.+.+...+..-+ .+.++.|++.++|..- |+..+
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~----~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID----ADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHHHHHHHH
Confidence 4332 22357899999999988888776643222111 3455778999999654 44433
No 125
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.0011 Score=79.58 Aligned_cols=197 Identities=14% Similarity=0.075 Sum_probs=112.5
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-cCceEEEEecccccHHHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-FDPKAWVCVSDDFDVLRISKVIL 247 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~ 247 (1349)
..++|.+..++.+..++... .-...+.++|+.|+||||+|+.+++...-.. .+ +-.+.. -...+.+.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~-----r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~----C~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAG-----RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGV----CESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCcccc----cHHHHHhh
Confidence 46899999999999998643 2345678999999999999999887543111 11 000000 01111111
Q ss_pred HH---------ccCC-CCCcCChHHHHHHHHHH-hcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEE-Eecchh
Q 000692 248 ES---------ITLS-PCELKDLNSVQLKLKEA-LFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIV-TTRSVD 315 (1349)
Q Consensus 248 ~~---------l~~~-~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv-TtR~~~ 315 (1349)
.. +... ....+++.++.+.+... ..+++-++|+|++..-.......+...+-.-.....+|+ ||....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 10 0000 00111222222222111 135566899999977666777777777765444555555 444444
Q ss_pred HHHhhc-CCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChH-HHHHHHHhh
Q 000692 316 VALTMG-SGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPL-AARALGGLL 381 (1349)
Q Consensus 316 v~~~~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~~~~l 381 (1349)
+...+. -...+++.+++.++..+.+.+.+...+...+ .+....|++.++|.+- |+..+-..+
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~----~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD----DAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 443322 2357899999999999888877643332211 3345667899999874 444444433
No 126
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.78 E-value=0.00061 Score=75.65 Aligned_cols=211 Identities=17% Similarity=0.090 Sum_probs=124.2
Q ss_pred CCccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCccc-CceEEEEecccccHHHHHHHH
Q 000692 168 EPAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDF-DPKAWVCVSDDFDVLRISKVI 246 (1349)
Q Consensus 168 ~~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i 246 (1349)
...++||+.|++.+..++...-. ....+-+.|.|.+|.|||.+...++.+.....- -.++++++..-....+++..|
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 45689999999999999875432 334578899999999999999999988654332 245788877666677888888
Q ss_pred HHHccCCCCCcCChHHHHHHHHHHhcC--CceEEEEeCCCCCChhhHHHhhccC-CCCCCCcEEEEEecc--hhHHH---
Q 000692 247 LESITLSPCELKDLNSVQLKLKEALFK--KKYLIVLDDVWSKSYDLWQALKSPF-MVGAPDSRIIVTTRS--VDVAL--- 318 (1349)
Q Consensus 247 ~~~l~~~~~~~~~~~~~~~~l~~~l~~--~~~LlVlDdv~~~~~~~~~~~~~~l-~~~~~gs~ilvTtR~--~~v~~--- 318 (1349)
...+-..........+.+..+.++..+ +.+|+|+|..+.-....-..+...| .+.-+++++|+.--- -+..+
T Consensus 227 ~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~L 306 (529)
T KOG2227|consen 227 FSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFL 306 (529)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHh
Confidence 877621111111124455566666544 3689999998431111111122222 123456666654321 11111
Q ss_pred -hh-----cCCceEeCCCCChhhHHHHHHHHHhcCCCCC-CchhHHHHHHHHHHHhCCChHHHHHHHHh
Q 000692 319 -TM-----GSGGYCELKLLSDDDCWSVFVKHAFESRDAG-THENLESIRQKVVEKCKGLPLAARALGGL 380 (1349)
Q Consensus 319 -~~-----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~PLal~~~~~~ 380 (1349)
.+ .....+..+|.+.++-.++|..+........ .+..++-.|++++.--|.+=-|+.+.-++
T Consensus 307 prL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~a 375 (529)
T KOG2227|consen 307 PRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRA 375 (529)
T ss_pred hhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 11 1234678899999999999998874322211 12234444444444444444555444433
No 127
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.78 E-value=0.0012 Score=77.87 Aligned_cols=182 Identities=13% Similarity=0.112 Sum_probs=105.1
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc--cC-------------------c
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED--FD-------------------P 227 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~--f~-------------------~ 227 (1349)
..++|.+..++.+..++... .-...+.++|..|+||||+|+.+++...... .+ .
T Consensus 17 ~diiGq~~~v~~L~~~i~~~-----~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFN-----RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 46889999999999888532 2246788999999999999999877542110 00 0
Q ss_pred eEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHH-HHhcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcE
Q 000692 228 KAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLK-EALFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSR 306 (1349)
Q Consensus 228 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ 306 (1349)
.+++........ ++..++...+. .-..+++-++|+|++..-.......+...+-.......
T Consensus 92 ~~~i~g~~~~gi------------------d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~ 153 (451)
T PRK06305 92 VLEIDGASHRGI------------------EDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVK 153 (451)
T ss_pred eEEeeccccCCH------------------HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCce
Confidence 111111011001 11111111111 11235677899999965444455566666554444666
Q ss_pred EEEEecc-hhHHHhhc-CCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChH-HHHHH
Q 000692 307 IIVTTRS-VDVALTMG-SGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPL-AARAL 377 (1349)
Q Consensus 307 ilvTtR~-~~v~~~~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~ 377 (1349)
+|++|.. ..+...+. ....++++++++++....+.+.+...+..-+ .+.++.|++.++|.+- |+..+
T Consensus 154 ~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~----~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 154 FFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETS----REALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 6666543 33322221 2246899999999999888877643222111 3455778999999764 44443
No 128
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.0014 Score=77.81 Aligned_cols=183 Identities=14% Similarity=0.082 Sum_probs=106.4
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCc-c-------------------cCce
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVE-D-------------------FDPK 228 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~-~-------------------f~~~ 228 (1349)
..++|.+.....+..++... .-...+.++|+.|+||||+|+.++....-. . |..+
T Consensus 16 ~diiGq~~i~~~L~~~i~~~-----~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQ-----RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 35889999999999888542 224567789999999999999987753210 0 1111
Q ss_pred EEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHH-HhcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEE
Q 000692 229 AWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKE-ALFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRI 307 (1349)
Q Consensus 229 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~i 307 (1349)
+++..+..... ++...+.+.+.. -..+++-++|+|+++.-.......+...+....+...+
T Consensus 91 ~eidaas~~gv------------------d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 91 IEIDAASNRGI------------------DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred EEEeCccCCCH------------------HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 22221111111 111111111111 11356679999999665555666666666544445555
Q ss_pred EEEe-cchhHHHhhc-CCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHHH
Q 000692 308 IVTT-RSVDVALTMG-SGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARALG 378 (1349)
Q Consensus 308 lvTt-R~~~v~~~~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 378 (1349)
|++| +...+...+. ....+.+.+++.++....+...+...+...+ .+.+..|++.++|.+-.+....
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id----~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE----EKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 5544 4333332221 2246899999999999888877643332211 3445667889999776554443
No 129
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.74 E-value=0.00058 Score=74.92 Aligned_cols=158 Identities=15% Similarity=0.089 Sum_probs=82.1
Q ss_pred ccccchhhHHHHHHHHhcc---------CCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-cCceEEEEecccccH
Q 000692 170 AVYGRDEDKARVLKIVLKI---------DPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-FDPKAWVCVSDDFDV 239 (1349)
Q Consensus 170 ~~~Gr~~~~~~l~~~l~~~---------~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~~~~wv~~~~~~~~ 239 (1349)
.++|.+..++++.++.... +....+....+.++|++|+||||+|+.+++.....+ -....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 4788887776665443221 111223456788999999999999999976532111 111123333221
Q ss_pred HHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCceEEEEeCCCCCC--------hhhHHHhhccCCCCCCCcEEEEEe
Q 000692 240 LRISKVILESITLSPCELKDLNSVQLKLKEALFKKKYLIVLDDVWSKS--------YDLWQALKSPFMVGAPDSRIIVTT 311 (1349)
Q Consensus 240 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--------~~~~~~~~~~l~~~~~gs~ilvTt 311 (1349)
++. ..... .........+.+. ..-+|++|++..-. .+..+.+...+........+++++
T Consensus 84 -~l~----~~~~g-----~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 84 -DLV----GEYIG-----HTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred -Hhh----hhhcc-----chHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 111 11100 0011112222221 23589999995421 123344444443333334556665
Q ss_pred cchhH----------HHhhcCCceEeCCCCChhhHHHHHHHHHh
Q 000692 312 RSVDV----------ALTMGSGGYCELKLLSDDDCWSVFVKHAF 345 (1349)
Q Consensus 312 R~~~v----------~~~~~~~~~~~l~~L~~~~~~~l~~~~~~ 345 (1349)
...+. ..++ ...+++++++.++-.+++.+.+.
T Consensus 151 ~~~~~~~~~~~~p~L~sRf--~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRF--PISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CcchhHHHHhcChHHHhcc--ceEEEECCCCHHHHHHHHHHHHH
Confidence 44332 1111 23578999999999999987774
No 130
>CHL00181 cbbX CbbX; Provisional
Probab=97.73 E-value=0.0015 Score=72.10 Aligned_cols=135 Identities=13% Similarity=0.064 Sum_probs=73.6
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCccc-CceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVEDF-DPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKK 274 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 274 (1349)
...+.++|.+|+||||+|+.+++.....++ ...-|+.++.. ++ ........ .......+.+. .
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~----~l----~~~~~g~~-----~~~~~~~l~~a---~ 122 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD----DL----VGQYIGHT-----APKTKEVLKKA---M 122 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH----HH----HHHHhccc-----hHHHHHHHHHc---c
Confidence 345889999999999999999775322221 11124444421 22 22221110 11112222222 2
Q ss_pred ceEEEEeCCCCC---------ChhhHHHhhccCCCCCCCcEEEEEecchhHHHhh--------cCCceEeCCCCChhhHH
Q 000692 275 KYLIVLDDVWSK---------SYDLWQALKSPFMVGAPDSRIIVTTRSVDVALTM--------GSGGYCELKLLSDDDCW 337 (1349)
Q Consensus 275 ~~LlVlDdv~~~---------~~~~~~~~~~~l~~~~~gs~ilvTtR~~~v~~~~--------~~~~~~~l~~L~~~~~~ 337 (1349)
.-+|++|++..- ..+....+...+.....+.+||+++....+...+ .-...+.+++++.++..
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 359999999541 1122233344343334556777777644432211 11246899999999999
Q ss_pred HHHHHHHhc
Q 000692 338 SVFVKHAFE 346 (1349)
Q Consensus 338 ~l~~~~~~~ 346 (1349)
+++...+..
T Consensus 203 ~I~~~~l~~ 211 (287)
T CHL00181 203 QIAKIMLEE 211 (287)
T ss_pred HHHHHHHHH
Confidence 999887743
No 131
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.0016 Score=79.61 Aligned_cols=179 Identities=15% Similarity=0.133 Sum_probs=107.8
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCc----------------------ccC
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVE----------------------DFD 226 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~----------------------~f~ 226 (1349)
..++|.+...+.+..++... .-...+.++|..|+||||+|+.++....-. .|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~-----~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATN-----KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 36899999999999998643 234678899999999999999887653210 021
Q ss_pred ceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcE
Q 000692 227 PKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSR 306 (1349)
Q Consensus 227 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ 306 (1349)
+..+.........++ +++++++... -..+++=++|+|++..-....+..+...+-.-..++.
T Consensus 92 -~~~ld~~~~~~vd~I-r~li~~~~~~----------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ti 153 (614)
T PRK14971 92 -IHELDAASNNSVDDI-RNLIEQVRIP----------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAI 153 (614)
T ss_pred -eEEecccccCCHHHH-HHHHHHHhhC----------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeE
Confidence 112222111111111 1111111100 0124556889999977666677777777655445566
Q ss_pred EEEEe-cchhHHHhhcC-CceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHH
Q 000692 307 IIVTT-RSVDVALTMGS-GGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAA 374 (1349)
Q Consensus 307 ilvTt-R~~~v~~~~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 374 (1349)
+|++| +...+...+.. ...++++++++++....+.+.+...+...+ .+.+..|++.++|..--+
T Consensus 154 fIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~----~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 154 FILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE----PEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 65544 44444433222 247899999999999988877643332211 334577899999976544
No 132
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.68 E-value=0.0004 Score=79.16 Aligned_cols=148 Identities=16% Similarity=0.124 Sum_probs=84.1
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILE 248 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 248 (1349)
..++|.+...+.+..++..+ .-..++.++|.+|+||||+|+.+++.... ....++.+. ..... .+..+.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~~~~----~~~~i~~~~-~~~~~-i~~~l~ 89 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNEVGA----EVLFVNGSD-CRIDF-VRNRLT 89 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHHhCc----cceEeccCc-ccHHH-HHHHHH
Confidence 46899999999999988632 23567888999999999999999886421 123344443 11111 111111
Q ss_pred HccCCCCCcCChHHHHHHHHHHhcCCceEEEEeCCCCC-ChhhHHHhhccCCCCCCCcEEEEEecchh-HHHhhc-CCce
Q 000692 249 SITLSPCELKDLNSVQLKLKEALFKKKYLIVLDDVWSK-SYDLWQALKSPFMVGAPDSRIIVTTRSVD-VALTMG-SGGY 325 (1349)
Q Consensus 249 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~~~~~l~~~~~gs~ilvTtR~~~-v~~~~~-~~~~ 325 (1349)
.+. .. ....+.+-++|+||+... ..+....+...+.....++++|+||.... +...+. ....
T Consensus 90 ~~~-------------~~--~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~ 154 (316)
T PHA02544 90 RFA-------------ST--VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRV 154 (316)
T ss_pred HHH-------------Hh--hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceE
Confidence 100 00 001234568999999654 22223334333333346778888886532 111111 1135
Q ss_pred EeCCCCChhhHHHHHHH
Q 000692 326 CELKLLSDDDCWSVFVK 342 (1349)
Q Consensus 326 ~~l~~L~~~~~~~l~~~ 342 (1349)
+.++..+.++..+++..
T Consensus 155 i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 155 IDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEeCCCCHHHHHHHHHH
Confidence 67777777777766543
No 133
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.66 E-value=0.00051 Score=72.07 Aligned_cols=182 Identities=18% Similarity=0.144 Sum_probs=112.0
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-cCceE-EEEecccccHHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-FDPKA-WVCVSDDFDVLRISKVI 246 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~~~~-wv~~~~~~~~~~~~~~i 246 (1349)
..++|.+..+..+...+.. ....+...+|++|.|||+-|+.++...--.. |.+++ =.+++...... +.
T Consensus 36 de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vv--- 105 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VV--- 105 (346)
T ss_pred HhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-ch---
Confidence 4688999999999988865 2356889999999999999999887654434 54443 23444332221 00
Q ss_pred HHHccCCCCCcCChHHHHHHHHHHh--cCCc-eEEEEeCCCCCChhhHHHhhccCCCCCCCcEEE-EEecchhHHHhhcC
Q 000692 247 LESITLSPCELKDLNSVQLKLKEAL--FKKK-YLIVLDDVWSKSYDLWQALKSPFMVGAPDSRII-VTTRSVDVALTMGS 322 (1349)
Q Consensus 247 ~~~l~~~~~~~~~~~~~~~~l~~~l--~~~~-~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~il-vTtR~~~v~~~~~~ 322 (1349)
.....+.+.+.....+.. .-++ -.||||+++.-..+.|..+...+-.....++.+ ||+.-..+...+..
T Consensus 106 -------r~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 106 -------REKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred -------hhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 011111111111111000 0123 478899998877889999888776655566654 44443332222211
Q ss_pred C-ceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCCh
Q 000692 323 G-GYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLP 371 (1349)
Q Consensus 323 ~-~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 371 (1349)
. ..++.++|.+++...-++..+...+..-+ .+..+.|++.++|--
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d----~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGVDID----DDALKLIAKISDGDL 224 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCcH
Confidence 1 35889999999999999988865544433 233466789998854
No 134
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.64 E-value=0.0013 Score=72.52 Aligned_cols=133 Identities=13% Similarity=0.035 Sum_probs=72.7
Q ss_pred EEEEEEccCCChHHHHHHHHHcCCCCcc-cCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCc
Q 000692 197 RLIPIVGMGGIGKTTLAREVYNDKSVED-FDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKKK 275 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 275 (1349)
..+.++|.+|+|||++|+.++......+ ....-|+.++. .+ +...+.... .......+.+. ..
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~~-----~~~~~~~~~~a---~~ 122 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGHT-----APKTKEILKRA---MG 122 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhcccc-----hHHHHHHHHHc---cC
Confidence 3688999999999999987766543222 11112444442 11 222221111 11122222222 34
Q ss_pred eEEEEeCCCCC---------ChhhHHHhhccCCCCCCCcEEEEEecchhHHHhhc--------CCceEeCCCCChhhHHH
Q 000692 276 YLIVLDDVWSK---------SYDLWQALKSPFMVGAPDSRIIVTTRSVDVALTMG--------SGGYCELKLLSDDDCWS 338 (1349)
Q Consensus 276 ~LlVlDdv~~~---------~~~~~~~~~~~l~~~~~gs~ilvTtR~~~v~~~~~--------~~~~~~l~~L~~~~~~~ 338 (1349)
-+|++|++..- ..+.+..+...+.....+.+||+++........+. -...+++++++.+|-.+
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~ 202 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLV 202 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHH
Confidence 68999999521 11223444444444445667777765433322111 12468999999999999
Q ss_pred HHHHHHh
Q 000692 339 VFVKHAF 345 (1349)
Q Consensus 339 l~~~~~~ 345 (1349)
++...+.
T Consensus 203 I~~~~l~ 209 (284)
T TIGR02880 203 IAGLMLK 209 (284)
T ss_pred HHHHHHH
Confidence 9988763
No 135
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.64 E-value=0.00098 Score=78.53 Aligned_cols=161 Identities=13% Similarity=0.141 Sum_probs=92.2
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCccc-CceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVEDF-DPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKK 274 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 274 (1349)
...+.|+|..|+|||+||+++++....+.. ..++++++. ++...+...+... ..+. +.+.+++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~~----~~~~~~~- 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE------KFTNDFVNALRNN-----KMEE----FKEKYRS- 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH------HHHHHHHHHHHcC-----CHHH----HHHHHHh-
Confidence 456899999999999999999987543221 245566532 3333444443311 1222 2333332
Q ss_pred ceEEEEeCCCCCChh-hH-HHhhccCCC-CCCCcEEEEEecch-h--------HHHhhcCCceEeCCCCChhhHHHHHHH
Q 000692 275 KYLIVLDDVWSKSYD-LW-QALKSPFMV-GAPDSRIIVTTRSV-D--------VALTMGSGGYCELKLLSDDDCWSVFVK 342 (1349)
Q Consensus 275 ~~LlVlDdv~~~~~~-~~-~~~~~~l~~-~~~gs~ilvTtR~~-~--------v~~~~~~~~~~~l~~L~~~~~~~l~~~ 342 (1349)
.-+||+||+...... .+ +.+...+-. ...|..+|+|+... . +..++.....+.+++.+.++-.+++.+
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHH
Confidence 348899999643211 11 122221111 12345678877642 1 222333345689999999999999998
Q ss_pred HHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHH
Q 000692 343 HAFESRDAGTHENLESIRQKVVEKCKGLPLAARA 376 (1349)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 376 (1349)
.+......- -+++...|++.+.|..-.+..
T Consensus 280 ~~~~~~~~l----~~e~l~~ia~~~~~~~r~l~~ 309 (405)
T TIGR00362 280 KAEEEGLEL----PDEVLEFIAKNIRSNVRELEG 309 (405)
T ss_pred HHHHcCCCC----CHHHHHHHHHhcCCCHHHHHH
Confidence 885432211 145667788888887665443
No 136
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=1.5e-06 Score=89.24 Aligned_cols=62 Identities=16% Similarity=0.269 Sum_probs=29.9
Q ss_pred CcCeEEEccCCCcccccccccccCCccceEeecCCCCCcccCC-CCCCCCccEEEEccccCcc
Q 000692 1011 NLREITIEDCNALTSLTDGMIHNNARLEVLRIKGCHSLTSISR-GQLPSSLKAIEINNCQILR 1072 (1349)
Q Consensus 1011 ~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~c~~l~ 1072 (1349)
.|+.|++++-+...+--.+++..+..|+.|.+.+...-..+.. ..--.+|+.++++.|+.++
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t 248 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFT 248 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccc
Confidence 3666666662222222233355667777777766432222211 0112456666666665554
No 137
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.63 E-value=0.0015 Score=76.99 Aligned_cols=162 Identities=17% Similarity=0.154 Sum_probs=94.1
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcccC-ceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVEDFD-PKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKK 274 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 274 (1349)
...+.|+|..|+|||+||+++++.......+ .++|+++ .++...+...+... ..+ .+.+..+.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~----~f~~~~~~~ 194 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLN----EFREKYRKK 194 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHH----HHHHHHHhc
Confidence 3458999999999999999999875433233 4556653 33445555544321 122 233333445
Q ss_pred ceEEEEeCCCCCC-hhhH-HHhhccCCC-CCCCcEEEEEec-chh--------HHHhhcCCceEeCCCCChhhHHHHHHH
Q 000692 275 KYLIVLDDVWSKS-YDLW-QALKSPFMV-GAPDSRIIVTTR-SVD--------VALTMGSGGYCELKLLSDDDCWSVFVK 342 (1349)
Q Consensus 275 ~~LlVlDdv~~~~-~~~~-~~~~~~l~~-~~~gs~ilvTtR-~~~--------v~~~~~~~~~~~l~~L~~~~~~~l~~~ 342 (1349)
.-+|++||+.... ...+ +.+...+.. ...|..||+||. .+. +..++.....+.+++.+.++-.+++++
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~ 274 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARK 274 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHH
Confidence 6689999996421 1111 122222111 123456888875 322 222334445789999999999999998
Q ss_pred HHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHH
Q 000692 343 HAFESRDAGTHENLESIRQKVVEKCKGLPLAARA 376 (1349)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 376 (1349)
.+...... -+ +++...|++.+.|..-.+..
T Consensus 275 ~~~~~~~~-l~---~ev~~~Ia~~~~~~~R~L~g 304 (440)
T PRK14088 275 MLEIEHGE-LP---EEVLNFVAENVDDNLRRLRG 304 (440)
T ss_pred HHHhcCCC-CC---HHHHHHHHhccccCHHHHHH
Confidence 87432211 11 45667788888876544433
No 138
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.62 E-value=0.0011 Score=80.83 Aligned_cols=197 Identities=14% Similarity=0.099 Sum_probs=109.9
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILE 248 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 248 (1349)
..++|.+.....+..++.... -...+.++|..|+||||+|+.+++...-...+.... .........+.+..
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~----~~Cg~C~~C~~i~~ 86 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTP----EPCGKCELCRAIAA 86 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCC----CCCcccHHHHHHhc
Confidence 358899999999988886432 235678999999999999999987653211110000 11111222233322
Q ss_pred HccCC-----CCCcCChHHHHHHHHHH----hcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecc-hhHHH
Q 000692 249 SITLS-----PCELKDLNSVQLKLKEA----LFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRS-VDVAL 318 (1349)
Q Consensus 249 ~l~~~-----~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~-~~v~~ 318 (1349)
..... .......++..+.+... ..+++-++|+|++..-....+..+...+-.-.....+|++|.+ ..+..
T Consensus 87 g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llp 166 (620)
T PRK14948 87 GNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLP 166 (620)
T ss_pred CCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhH
Confidence 21110 00111122222222111 1245668999999766556677777666543344555544443 33332
Q ss_pred hhcC-CceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHHH
Q 000692 319 TMGS-GGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARALG 378 (1349)
Q Consensus 319 ~~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 378 (1349)
.+.. ...+++..++.++....+.+.+...+..-+ .+.+..|++.++|.+..+..+.
T Consensus 167 TIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is----~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 167 TIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE----PEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 2221 246788899999988888776643222111 2346778999999886554433
No 139
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.58 E-value=0.0035 Score=75.65 Aligned_cols=192 Identities=17% Similarity=0.128 Sum_probs=110.2
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-cCceEEEEecccccHHHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-FDPKAWVCVSDDFDVLRISKVIL 247 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~ 247 (1349)
..++|.+..+..+..++... .-.+.+.++|+.|+||||+|+.+++...-.. .+. ..+....+- +++.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~-----~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C----~~i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESN-----KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSC----KSID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHH----HHHH
Confidence 46899999999999998643 2346788999999999999999987643110 100 001111111 1111
Q ss_pred HHccC-----CCCCcCChHHHHH---HHHH-HhcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecc-hhHH
Q 000692 248 ESITL-----SPCELKDLNSVQL---KLKE-ALFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRS-VDVA 317 (1349)
Q Consensus 248 ~~l~~-----~~~~~~~~~~~~~---~l~~-~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~-~~v~ 317 (1349)
..-.. ........++..+ .+.. -..+++-++|+|++..-....+..+...+-.......+|++|.. ..+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 11000 0000111222221 1111 12356668999999766666677777776554456666655543 3333
Q ss_pred HhhcC-CceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHH
Q 000692 318 LTMGS-GGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARA 376 (1349)
Q Consensus 318 ~~~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 376 (1349)
..+.. ...++.++++.++..+.+.+.+...+..-+ .+.+..|++.++|.+-.+..
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id----~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYE----DEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 32221 246889999999998888877644332211 34556689999998854443
No 140
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.58 E-value=0.00056 Score=86.49 Aligned_cols=154 Identities=14% Similarity=0.155 Sum_probs=86.1
Q ss_pred ccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-----cCceEEEEecccccHHHHHH
Q 000692 170 AVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-----FDPKAWVCVSDDFDVLRISK 244 (1349)
Q Consensus 170 ~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~ 244 (1349)
.++||++++++++..|..... .-+.++|.+|+|||++|+.+++...... .+..+|.. +...+.
T Consensus 183 ~~igr~~ei~~~~~~L~~~~~------~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l~- 250 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRRKK------NNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSLL- 250 (731)
T ss_pred cccCcHHHHHHHHHHHhcCCC------CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHHh-
Confidence 589999999999998865432 3457999999999999999988642211 13444432 111111
Q ss_pred HHHHHccCCCCCcCChHHHHHHHHHHh-cCCceEEEEeCCCCC---------ChhhHHHhhccCCCCCCCcEEEEEecch
Q 000692 245 VILESITLSPCELKDLNSVQLKLKEAL-FKKKYLIVLDDVWSK---------SYDLWQALKSPFMVGAPDSRIIVTTRSV 314 (1349)
Q Consensus 245 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~---------~~~~~~~~~~~l~~~~~gs~ilvTtR~~ 314 (1349)
.. .....+.++....+.+.+ +.++.+|++|++..- +.+.-+.+...+. . ..-++|-+|...
T Consensus 251 ---a~----~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~-~-g~i~~IgaTt~~ 321 (731)
T TIGR02639 251 ---AG----TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS-S-GKLRCIGSTTYE 321 (731)
T ss_pred ---hh----ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh-C-CCeEEEEecCHH
Confidence 00 001122333333333333 346899999998521 0111222332222 1 123455444432
Q ss_pred hHHH------hh-cCCceEeCCCCChhhHHHHHHHHH
Q 000692 315 DVAL------TM-GSGGYCELKLLSDDDCWSVFVKHA 344 (1349)
Q Consensus 315 ~v~~------~~-~~~~~~~l~~L~~~~~~~l~~~~~ 344 (1349)
+... .+ .-...+++++++.++..+++....
T Consensus 322 e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 322 EYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 2211 11 112468999999999999998655
No 141
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.56 E-value=0.00043 Score=80.32 Aligned_cols=177 Identities=18% Similarity=0.172 Sum_probs=97.3
Q ss_pred CccccchhhHHHHHHHHhccCC-------CCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDP-------NDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLR 241 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~-------~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 241 (1349)
..+.|+++.++++.+.+...-. -+-..++.|.++|++|+|||++|+++++..... |+.+.. .+
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~------~i~v~~----~~ 200 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT------FIRVVG----SE 200 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC------EEEeeh----HH
Confidence 3688999999999887643111 012345678999999999999999999864422 222211 11
Q ss_pred HHHHHHHHccCCCCCcCChHHHHHHHHH-HhcCCceEEEEeCCCCC-----------ChhhHHHhhccC---C--CCCCC
Q 000692 242 ISKVILESITLSPCELKDLNSVQLKLKE-ALFKKKYLIVLDDVWSK-----------SYDLWQALKSPF---M--VGAPD 304 (1349)
Q Consensus 242 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~-----------~~~~~~~~~~~l---~--~~~~g 304 (1349)
+. .... .+.......+.+ .-...+.+|++||++.- +.+.+..+...+ . ....+
T Consensus 201 l~----~~~~------g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~ 270 (389)
T PRK03992 201 LV----QKFI------GEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGN 270 (389)
T ss_pred Hh----Hhhc------cchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCC
Confidence 11 1110 011122222222 22356789999999531 111112222211 1 11235
Q ss_pred cEEEEEecchhHHH-hh-c---CCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCC
Q 000692 305 SRIIVTTRSVDVAL-TM-G---SGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGL 370 (1349)
Q Consensus 305 s~ilvTtR~~~v~~-~~-~---~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 370 (1349)
..||.||...+... .+ . -...+++++.+.++..++|+.+..+.... ..... ..+++.+.|.
T Consensus 271 v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~~----~~la~~t~g~ 336 (389)
T PRK03992 271 VKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVDL----EELAELTEGA 336 (389)
T ss_pred EEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCCH----HHHHHHcCCC
Confidence 67777776543222 11 1 13468999999999999999877432221 11223 4456666664
No 142
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.56 E-value=0.00068 Score=86.20 Aligned_cols=155 Identities=12% Similarity=0.125 Sum_probs=85.4
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCc----c-cCceEE-EEecccccHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVE----D-FDPKAW-VCVSDDFDVLRI 242 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~----~-f~~~~w-v~~~~~~~~~~~ 242 (1349)
..++||+.++++++..|..... .-+.++|.+|+||||+|+.++++.... . .+..+| +..+.-
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~------~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l------ 254 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQ------NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL------ 254 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCc------CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh------
Confidence 3689999999999999865432 345699999999999999998764211 1 233443 222110
Q ss_pred HHHHHHHccCCCCCcCChHHHHHHHHHHh--cCCceEEEEeCCCCCC-------hhhHHHhhccCCCCCCCcEEEEEecc
Q 000692 243 SKVILESITLSPCELKDLNSVQLKLKEAL--FKKKYLIVLDDVWSKS-------YDLWQALKSPFMVGAPDSRIIVTTRS 313 (1349)
Q Consensus 243 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~-------~~~~~~~~~~l~~~~~gs~ilvTtR~ 313 (1349)
........+.++....+.+.. .+++.+|++|++..-. ..+-..+..+.... ..-++|-||..
T Consensus 255 --------~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~-G~l~~IgaTT~ 325 (852)
T TIGR03345 255 --------QAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR-GELRTIAATTW 325 (852)
T ss_pred --------hcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC-CCeEEEEecCH
Confidence 000001111212222222212 2478999999985421 11111222222211 23556666654
Q ss_pred hhHHHhh-------cCCceEeCCCCChhhHHHHHHHHH
Q 000692 314 VDVALTM-------GSGGYCELKLLSDDDCWSVFVKHA 344 (1349)
Q Consensus 314 ~~v~~~~-------~~~~~~~l~~L~~~~~~~l~~~~~ 344 (1349)
.+....+ .-...+.+++++.+++.+++....
T Consensus 326 ~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 326 AEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred HHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 3321111 122479999999999999975444
No 143
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.55 E-value=0.00031 Score=79.87 Aligned_cols=107 Identities=16% Similarity=0.140 Sum_probs=71.4
Q ss_pred ccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-cCceEEEEecccccHHHHHHHHHH
Q 000692 170 AVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-FDPKAWVCVSDDFDVLRISKVILE 248 (1349)
Q Consensus 170 ~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~ 248 (1349)
.+++.++.++.+...+... +.+.++|++|+|||++|+++++...... |+.+.||.+++..+..+++..+.
T Consensus 176 d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r- 246 (459)
T PRK11331 176 DLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR- 246 (459)
T ss_pred cccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC-
Confidence 4778888999999988642 4678899999999999999998765444 78899999999888766654221
Q ss_pred HccCCCCCcCCh-HHHHHHHHHHhc--CCceEEEEeCCCCCCh
Q 000692 249 SITLSPCELKDL-NSVQLKLKEALF--KKKYLIVLDDVWSKSY 288 (1349)
Q Consensus 249 ~l~~~~~~~~~~-~~~~~~l~~~l~--~~~~LlVlDdv~~~~~ 288 (1349)
.......-. .-..+.+.+..+ ++++++|+|++...+.
T Consensus 247 ---P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani 286 (459)
T PRK11331 247 ---PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL 286 (459)
T ss_pred ---CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH
Confidence 110010000 011122222222 4689999999966543
No 144
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.52 E-value=0.0032 Score=73.95 Aligned_cols=153 Identities=13% Similarity=0.088 Sum_probs=87.4
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCc
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKKK 275 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 275 (1349)
...+.|+|..|+|||+||+++++..... ...+++++. ..+...+...+... . ...+++..+ ..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~-~~~v~yi~~------~~f~~~~~~~l~~~-----~----~~~f~~~~~-~~ 203 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRES-GGKILYVRS------ELFTEHLVSAIRSG-----E----MQRFRQFYR-NV 203 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHc-CCCEEEeeH------HHHHHHHHHHHhcc-----h----HHHHHHHcc-cC
Confidence 4568899999999999999999865322 223455542 23333444444311 1 122333333 34
Q ss_pred eEEEEeCCCCCChhhH--HHhh---ccCCCCCCCcEEEEEecc---------hhHHHhhcCCceEeCCCCChhhHHHHHH
Q 000692 276 YLIVLDDVWSKSYDLW--QALK---SPFMVGAPDSRIIVTTRS---------VDVALTMGSGGYCELKLLSDDDCWSVFV 341 (1349)
Q Consensus 276 ~LlVlDdv~~~~~~~~--~~~~---~~l~~~~~gs~ilvTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~l~~ 341 (1349)
-++++||+.......| +.+. ..+. ..|..||+||.. +.+..++.....+.+++++.++-.+++.
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~--~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLH--TEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHH--HCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 5888899854321111 1222 1122 135578888854 2233344445678999999999999999
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHHhCCCh
Q 000692 342 KHAFESRDAGTHENLESIRQKVVEKCKGLP 371 (1349)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 371 (1349)
+++..... .-+ +++..-|++.+.|.-
T Consensus 282 ~k~~~~~~-~l~---~evl~~la~~~~~di 307 (445)
T PRK12422 282 RKAEALSI-RIE---ETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHcCC-CCC---HHHHHHHHHhcCCCH
Confidence 88744321 111 344455666666543
No 145
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.50 E-value=0.0038 Score=75.79 Aligned_cols=191 Identities=15% Similarity=0.092 Sum_probs=106.5
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-cCceEEEEecccccHHHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-FDPKAWVCVSDDFDVLRISKVIL 247 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~ 247 (1349)
..++|.+...+.+..++.... -.+.+.++|+.|+||||+|+.+++...... -+. .+.......+.+.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~-------~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG-------EPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCccHHHHHHh
Confidence 468999999999999986432 346778899999999999999876532111 000 0011111112221
Q ss_pred HHccCC-----CCCcCChH---HHHHHHHH-HhcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEE-EecchhHH
Q 000692 248 ESITLS-----PCELKDLN---SVQLKLKE-ALFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIV-TTRSVDVA 317 (1349)
Q Consensus 248 ~~l~~~-----~~~~~~~~---~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv-TtR~~~v~ 317 (1349)
...... .......+ ++...+.. -..+++-++|+|++..-....+..+...+-.......+|+ ||....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 111000 00001122 22222111 1235666889999976655667777766654334445454 44444333
Q ss_pred Hhhc-CCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHH
Q 000692 318 LTMG-SGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAAR 375 (1349)
Q Consensus 318 ~~~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 375 (1349)
..+. ....+.+.+++.++....+...+...+...+ .+....|++.++|.+..+.
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~----~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE----DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 2221 1246889999999998888877643322211 3445677888988775443
No 146
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.49 E-value=9.2e-06 Score=73.75 Aligned_cols=97 Identities=20% Similarity=0.251 Sum_probs=59.7
Q ss_pred cccEEEeccccccccCcc---ccCCCccceEEecCCCCcccccccc-cCCCCcEEEecCccCCCcCchhhhccccccEEE
Q 000692 582 KLRVLSLRRYYITEVPIS---IGCLRHLRYLNFSDTKIKCLPESVT-SLLNLEILILRDCLHLLKLPSSIGNLVKLLHLD 657 (1349)
Q Consensus 582 ~Lr~L~L~~~~i~~lp~~---i~~L~~Lr~L~Ls~~~i~~lp~~i~-~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~ 657 (1349)
.+..+||+.|.+..+++. +.+..+|...+|++|.++.+|+.+. +.+.+.+|++++| .+..+|.++..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcc
Confidence 345566666666555443 3445566666777777776766654 3346667777765 5666776677777777777
Q ss_pred ecCCCccccCccccccCcCCCCC
Q 000692 658 IEGANLLSELPLRMKELKCLQTL 680 (1349)
Q Consensus 658 l~~~~~~~~~p~~i~~L~~L~~L 680 (1349)
++.|. +...|+-|..|.+|-.|
T Consensus 107 l~~N~-l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 107 LRFNP-LNAEPRVIAPLIKLDML 128 (177)
T ss_pred cccCc-cccchHHHHHHHhHHHh
Confidence 76666 45555555555555544
No 147
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.47 E-value=0.0032 Score=76.77 Aligned_cols=195 Identities=16% Similarity=0.151 Sum_probs=107.2
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-cCceEEEEecccccHHHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-FDPKAWVCVSDDFDVLRISKVIL 247 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~ 247 (1349)
..++|.+...+.+..++... .-...+.++|..|+||||+|+.+++...-.. .+. .+.......+.|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTG-----RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHh
Confidence 46899999999999888542 2346678999999999999999877542111 100 0000001111111
Q ss_pred HHccC-------C-CCCcCChHHHHHHHHHH-hcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEE-EecchhHH
Q 000692 248 ESITL-------S-PCELKDLNSVQLKLKEA-LFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIV-TTRSVDVA 317 (1349)
Q Consensus 248 ~~l~~-------~-~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv-TtR~~~v~ 317 (1349)
..-.. . ....+++.++...+... ..+++-++|+|++..-+......+...+-.-...+.+|+ ||....+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 00000 0 00011122222222111 134556899999966555666677666654344556654 44444444
Q ss_pred HhhcC-CceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCCh-HHHHHHHH
Q 000692 318 LTMGS-GGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLP-LAARALGG 379 (1349)
Q Consensus 318 ~~~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~~~ 379 (1349)
..+.. ...+++++++.++....+...+...+..-+ .+....|++.++|.. .|+..+-.
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~----~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS----DAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 33221 246789999999988888776633322111 344567899999866 45554433
No 148
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.47 E-value=0.0017 Score=77.48 Aligned_cols=158 Identities=12% Similarity=0.114 Sum_probs=92.7
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcc-cCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVED-FDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKK 274 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 274 (1349)
...+.|+|..|+|||+||+++++....+. -..++++++. ++...+...+.. ... ..+.+.++ +
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~-----~~~----~~~~~~~~-~ 211 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRN-----NTM----EEFKEKYR-S 211 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHc-----CcH----HHHHHHHh-c
Confidence 45689999999999999999998754332 1234555533 223333333321 111 22333333 3
Q ss_pred ceEEEEeCCCCCChhh-H-HHhhc---cCCCCCCCcEEEEEecch---------hHHHhhcCCceEeCCCCChhhHHHHH
Q 000692 275 KYLIVLDDVWSKSYDL-W-QALKS---PFMVGAPDSRIIVTTRSV---------DVALTMGSGGYCELKLLSDDDCWSVF 340 (1349)
Q Consensus 275 ~~LlVlDdv~~~~~~~-~-~~~~~---~l~~~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~l~ 340 (1349)
.-+||+||+....... + +.+.. .+. ..|..||+|+... .+..++.....+++++.+.++-.+++
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~--~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il 289 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALH--EAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAIL 289 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHH--HCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHH
Confidence 4589999995422111 1 22222 222 2345588877642 12334444557899999999999999
Q ss_pred HHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHH
Q 000692 341 VKHAFESRDAGTHENLESIRQKVVEKCKGLPLAAR 375 (1349)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 375 (1349)
.+.+...... -+ +++...|++.++|..-.+.
T Consensus 290 ~~~~~~~~~~-l~---~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 290 KKKAEEEGID-LP---DEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHcCCC-CC---HHHHHHHHcCcCCCHHHHH
Confidence 9988542211 11 4566778888888776543
No 149
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.47 E-value=0.0047 Score=64.11 Aligned_cols=124 Identities=20% Similarity=0.278 Sum_probs=71.0
Q ss_pred CCCccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHH
Q 000692 167 NEPAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVI 246 (1349)
Q Consensus 167 ~~~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 246 (1349)
.-..++|.+.+++.+++-...-- .+....-|.+||..|.|||++++++.+....++ .--|.+..
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt~~Fl--~G~pannvLL~G~rGtGKSSlVkall~~y~~~G---LRlIev~k----------- 88 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENTEQFL--QGLPANNVLLWGARGTGKSSLVKALLNEYADQG---LRLIEVSK----------- 88 (249)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHH--cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC---ceEEEECH-----------
Confidence 34579999999888876543211 122345678899999999999999988765442 11122221
Q ss_pred HHHccCCCCCcCChHHHHHHHHHHhcCCceEEEEeCCC-CCChhhHHHhhccCC---CCCCCcEEE-EEecchhH
Q 000692 247 LESITLSPCELKDLNSVQLKLKEALFKKKYLIVLDDVW-SKSYDLWQALKSPFM---VGAPDSRII-VTTRSVDV 316 (1349)
Q Consensus 247 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~~~~~~l~---~~~~gs~il-vTtR~~~v 316 (1349)
.+..++.++.+.++. +..||+|.+||.- +........++..+- ...+...+| +||-.++.
T Consensus 89 --------~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 89 --------EDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred --------HHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 122334444444442 3579999999983 222234455544443 223434444 45544443
No 150
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.41 E-value=0.00037 Score=67.73 Aligned_cols=23 Identities=43% Similarity=0.476 Sum_probs=20.8
Q ss_pred EEEEccCCChHHHHHHHHHcCCC
Q 000692 199 IPIVGMGGIGKTTLAREVYNDKS 221 (1349)
Q Consensus 199 v~i~G~gGiGKTtLa~~~~~~~~ 221 (1349)
|.|+|++|+|||++|+.+++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999864
No 151
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.40 E-value=0.0026 Score=71.36 Aligned_cols=97 Identities=14% Similarity=0.141 Sum_probs=62.5
Q ss_pred CCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecchh-HHHhhcC-CceEeCCCCChhhHHHHHHHHHhcCCCC
Q 000692 273 KKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRSVD-VALTMGS-GGYCELKLLSDDDCWSVFVKHAFESRDA 350 (1349)
Q Consensus 273 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~~-v~~~~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~ 350 (1349)
+++-++|+|+++.-.......+...+-.-..++.+|+||.+.. +...+.. -..+.+.+++.+++.+.+..... ..
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~-~~-- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALP-ES-- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcc-cC--
Confidence 3444557799977666677777776654445677777777643 3322222 24689999999999998876531 11
Q ss_pred CCchhHHHHHHHHHHHhCCChHHHHHH
Q 000692 351 GTHENLESIRQKVVEKCKGLPLAARAL 377 (1349)
Q Consensus 351 ~~~~~~~~~~~~i~~~~~g~PLal~~~ 377 (1349)
. .+.+..++..++|.|+.+..+
T Consensus 182 -~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -D----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -C----hHHHHHHHHHcCCCHHHHHHH
Confidence 1 223356688999999766544
No 152
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.38 E-value=0.0013 Score=84.28 Aligned_cols=154 Identities=14% Similarity=0.111 Sum_probs=86.3
Q ss_pred ccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCc---c--cCceEEEEecccccHHHHHH
Q 000692 170 AVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVE---D--FDPKAWVCVSDDFDVLRISK 244 (1349)
Q Consensus 170 ~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~---~--f~~~~wv~~~~~~~~~~~~~ 244 (1349)
.++||++++++++++|..... .-+.++|.+|+|||++|+.++...... . -+..+|.- +...++
T Consensus 180 ~~igr~~ei~~~~~~L~r~~~------~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l-----~~~~l~- 247 (821)
T CHL00095 180 PVIGREKEIERVIQILGRRTK------NNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL-----DIGLLL- 247 (821)
T ss_pred CCCCcHHHHHHHHHHHccccc------CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe-----eHHHHh-
Confidence 489999999999999965332 345799999999999999998764311 1 13455532 111111
Q ss_pred HHHHHccCCCCCcCChHHHHHHHHHH-hcCCceEEEEeCCCCC-------ChhhHHHhhccCCCCCCCcEEEEEecchhH
Q 000692 245 VILESITLSPCELKDLNSVQLKLKEA-LFKKKYLIVLDDVWSK-------SYDLWQALKSPFMVGAPDSRIIVTTRSVDV 316 (1349)
Q Consensus 245 ~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~-------~~~~~~~~~~~l~~~~~gs~ilvTtR~~~v 316 (1349)
. + .....+.++....+.+. -+.++.+|++|++..- ...+...+..+.... ..-++|.+|...+.
T Consensus 248 ---a--g--~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g~l~~IgaTt~~ey 319 (821)
T CHL00095 248 ---A--G--TKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-GELQCIGATTLDEY 319 (821)
T ss_pred ---c--c--CCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-CCcEEEEeCCHHHH
Confidence 1 1 11112333333333322 2357899999998421 001112222222211 23456666655443
Q ss_pred HHhh-------cCCceEeCCCCChhhHHHHHHHH
Q 000692 317 ALTM-------GSGGYCELKLLSDDDCWSVFVKH 343 (1349)
Q Consensus 317 ~~~~-------~~~~~~~l~~L~~~~~~~l~~~~ 343 (1349)
.... .....+.++..+.++...++...
T Consensus 320 ~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 320 RKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 2211 12246788889999988887653
No 153
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.38 E-value=0.0028 Score=75.45 Aligned_cols=156 Identities=11% Similarity=0.063 Sum_probs=92.3
Q ss_pred EEEEEEccCCChHHHHHHHHHcCCCCcc-cCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCc
Q 000692 197 RLIPIVGMGGIGKTTLAREVYNDKSVED-FDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKKK 275 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 275 (1349)
..+.|+|..|+|||.|++++++...... -..+++++. .++..++...+.. ... ..+++.+++ -
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~-----~~~----~~f~~~y~~-~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRD-----GKG----DSFRRRYRE-M 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHh-----ccH----HHHHHHhhc-C
Confidence 4589999999999999999998653221 123455553 3333344333321 111 123333333 3
Q ss_pred eEEEEeCCCCCCh-hhHH----HhhccCCCCCCCcEEEEEecc---------hhHHHhhcCCceEeCCCCChhhHHHHHH
Q 000692 276 YLIVLDDVWSKSY-DLWQ----ALKSPFMVGAPDSRIIVTTRS---------VDVALTMGSGGYCELKLLSDDDCWSVFV 341 (1349)
Q Consensus 276 ~LlVlDdv~~~~~-~~~~----~~~~~l~~~~~gs~ilvTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~l~~ 341 (1349)
=+||+||+..... +.|. .+...+. ..|..|||||+. ..+..++.....++++..+.+.-.+++.
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~--e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLH--NANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHH--hcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 5788999965322 2222 2222222 235668888875 2344455566689999999999999999
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHHhCCChHHH
Q 000692 342 KHAFESRDAGTHENLESIRQKVVEKCKGLPLAA 374 (1349)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 374 (1349)
+++....- .-+ +++.+-|++.+.+..-.|
T Consensus 457 kka~~r~l-~l~---~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 457 KKAVQEQL-NAP---PEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHhcCC-CCC---HHHHHHHHHhccCCHHHH
Confidence 88854322 111 456666777777664444
No 154
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.37 E-value=0.0031 Score=71.30 Aligned_cols=135 Identities=16% Similarity=0.192 Sum_probs=84.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCCCCcccCc-eEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcC
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDP-KAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFK 273 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 273 (1349)
....+.|+|..|.|||.|++++.+.......+. +++++ .+.....++..+.. .-.+.+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~------se~f~~~~v~a~~~---------~~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT------SEDFTNDFVKALRD---------NEMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc------HHHHHHHHHHHHHh---------hhHHHHHHhh--
Confidence 567899999999999999999998765443333 33333 22333333333321 1233455554
Q ss_pred CceEEEEeCCCCCCh-hhHH----HhhccCCCCCCCcEEEEEecc---------hhHHHhhcCCceEeCCCCChhhHHHH
Q 000692 274 KKYLIVLDDVWSKSY-DLWQ----ALKSPFMVGAPDSRIIVTTRS---------VDVALTMGSGGYCELKLLSDDDCWSV 339 (1349)
Q Consensus 274 ~~~LlVlDdv~~~~~-~~~~----~~~~~l~~~~~gs~ilvTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~l 339 (1349)
.-=++++||++--.. +.|+ .+...+.. .|-.||+|++. +++..++...-.+++.+.+.+....+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~--~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLE--NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHh--cCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 334888999954211 1222 22333332 34489999964 44555666677899999999999999
Q ss_pred HHHHHhcCC
Q 000692 340 FVKHAFESR 348 (1349)
Q Consensus 340 ~~~~~~~~~ 348 (1349)
+.+++....
T Consensus 253 L~kka~~~~ 261 (408)
T COG0593 253 LRKKAEDRG 261 (408)
T ss_pred HHHHHHhcC
Confidence 999774433
No 155
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.34 E-value=3.2e-05 Score=91.37 Aligned_cols=100 Identities=26% Similarity=0.323 Sum_probs=74.9
Q ss_pred ccCCCcccEEEeccccccccCccccCCCccceEEecCCCCcccccccccCCCCcEEEecCccCCCcCchhhhccccccEE
Q 000692 577 LPKFKKLRVLSLRRYYITEVPISIGCLRHLRYLNFSDTKIKCLPESVTSLLNLEILILRDCLHLLKLPSSIGNLVKLLHL 656 (1349)
Q Consensus 577 ~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L 656 (1349)
+..++.|..|++.+|.|..+...+..+.+|++|+|++|.|+.+. .+..+..|+.|++.+| .+..++ .+..+++|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGN-LISDIS-GLESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccC-cchhcc-CCccchhhhcc
Confidence 56788888999999988888766888889999999999888884 3777888999999887 555554 46668888888
Q ss_pred EecCCCccccCccc-cccCcCCCCC
Q 000692 657 DIEGANLLSELPLR-MKELKCLQTL 680 (1349)
Q Consensus 657 ~l~~~~~~~~~p~~-i~~L~~L~~L 680 (1349)
++++|. +..+... ...+.+++.+
T Consensus 168 ~l~~n~-i~~ie~~~~~~~~~l~~l 191 (414)
T KOG0531|consen 168 DLSYNR-IVDIENDELSELISLEEL 191 (414)
T ss_pred cCCcch-hhhhhhhhhhhccchHHH
Confidence 888887 4444432 3445555555
No 156
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.31 E-value=0.011 Score=61.06 Aligned_cols=182 Identities=16% Similarity=0.147 Sum_probs=105.9
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEec-ccccHHHHHHHHHHHccCCCCCcC--ChHHHHHHHHHHh
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVS-DDFDVLRISKVILESITLSPCELK--DLNSVQLKLKEAL 271 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~l~~~l 271 (1349)
+.+++.++|.-|.|||.+++++..... + +.++-|.+. ...+...+...++..+..++.... -.++..+.+.+..
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~-~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~ 126 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLN-E--DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALV 126 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcC-C--CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHH
Confidence 346999999999999999995544322 1 122223333 345667788888888876333211 2233334444433
Q ss_pred -cCCc-eEEEEeCCCCCChhhHHHhhccCC---CCCCCcEEEEEecch-------hHHHhhcC--CceEeCCCCChhhHH
Q 000692 272 -FKKK-YLIVLDDVWSKSYDLWQALKSPFM---VGAPDSRIIVTTRSV-------DVALTMGS--GGYCELKLLSDDDCW 337 (1349)
Q Consensus 272 -~~~~-~LlVlDdv~~~~~~~~~~~~~~l~---~~~~gs~ilvTtR~~-------~v~~~~~~--~~~~~l~~L~~~~~~ 337 (1349)
+++| ..+++|++.....+..+.+.-..- ....--+|+..-..+ .+...... .-.|++.|++.++..
T Consensus 127 ~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~ 206 (269)
T COG3267 127 KKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETG 206 (269)
T ss_pred HhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHH
Confidence 4677 899999997655555544332211 111112344333211 11111111 113899999999999
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHHh
Q 000692 338 SVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARALGGL 380 (1349)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~ 380 (1349)
.+++.+..+.....+ ---.+....|..+..|.|.++..++..
T Consensus 207 ~yl~~~Le~a~~~~~-l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 207 LYLRHRLEGAGLPEP-LFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHhccCCCcc-cCChhHHHHHHHHhccchHHHHHHHHH
Confidence 988888755433221 112445577899999999999877654
No 157
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.31 E-value=0.0015 Score=79.04 Aligned_cols=52 Identities=15% Similarity=0.177 Sum_probs=41.2
Q ss_pred CCccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCC
Q 000692 168 EPAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 168 ~~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
-..++|.+..++++..++..... .....+++.|+|++|+||||+++.++...
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34699999999999999865432 22334689999999999999999998764
No 158
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.30 E-value=0.0014 Score=64.79 Aligned_cols=88 Identities=20% Similarity=0.061 Sum_probs=49.0
Q ss_pred EEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCC-c
Q 000692 197 RLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKK-K 275 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~-~ 275 (1349)
..+.|+|++|+||||+|+.++...... ...++++..+........... ...................+.+..+.. .
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP-GGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC-CCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 578999999999999999998875433 124566655543322222111 111111111222223333344444443 4
Q ss_pred eEEEEeCCCCCC
Q 000692 276 YLIVLDDVWSKS 287 (1349)
Q Consensus 276 ~LlVlDdv~~~~ 287 (1349)
.+|++|+++...
T Consensus 80 ~viiiDei~~~~ 91 (148)
T smart00382 80 DVLILDEITSLL 91 (148)
T ss_pred CEEEEECCcccC
Confidence 999999997643
No 159
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.28 E-value=0.0023 Score=79.75 Aligned_cols=155 Identities=15% Similarity=0.169 Sum_probs=88.2
Q ss_pred ccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-----cCceEEEEecccccHHHHHH
Q 000692 170 AVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-----FDPKAWVCVSDDFDVLRISK 244 (1349)
Q Consensus 170 ~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~ 244 (1349)
.++||+++++++++.|..... .-+.++|.+|+|||++|+.++....... .++.+|.. +...+
T Consensus 187 ~liGR~~ei~~~i~iL~r~~~------~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l-- 253 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRRK------NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL-- 253 (758)
T ss_pred cCcCCCHHHHHHHHHHhccCC------CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH--
Confidence 489999999999999875322 3456899999999999999887532111 24455532 11111
Q ss_pred HHHHHccCCCCCcCChHHHHHHHHHHh-cCCceEEEEeCCCCC--------ChhhHHHhhccCCCCCCCcEEEEEecchh
Q 000692 245 VILESITLSPCELKDLNSVQLKLKEAL-FKKKYLIVLDDVWSK--------SYDLWQALKSPFMVGAPDSRIIVTTRSVD 315 (1349)
Q Consensus 245 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~--------~~~~~~~~~~~l~~~~~gs~ilvTtR~~~ 315 (1349)
+. ......+.+.....+.+.+ +.++.+|++|++..- ...+...+..++... ..-+||-+|...+
T Consensus 254 --la----G~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~E 326 (758)
T PRK11034 254 --LA----GTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQE 326 (758)
T ss_pred --hc----ccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChHH
Confidence 10 0011123333333333333 356789999999531 112233333333322 2345555554433
Q ss_pred HHHhh-------cCCceEeCCCCChhhHHHHHHHHH
Q 000692 316 VALTM-------GSGGYCELKLLSDDDCWSVFVKHA 344 (1349)
Q Consensus 316 v~~~~-------~~~~~~~l~~L~~~~~~~l~~~~~ 344 (1349)
....+ .-...+.++..+.+++.+++....
T Consensus 327 ~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 327 FSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 22111 122478999999999999998654
No 160
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.23 E-value=0.012 Score=65.80 Aligned_cols=195 Identities=16% Similarity=0.077 Sum_probs=109.0
Q ss_pred ccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCC-------------cc-cCceEEEEecc
Q 000692 170 AVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSV-------------ED-FDPKAWVCVSD 235 (1349)
Q Consensus 170 ~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~-------------~~-f~~~~wv~~~~ 235 (1349)
.++|.+...+.+...+..+. -.....++|..|+||+++|..+++..-- .. +.-..|+.-..
T Consensus 5 ~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~ 79 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTY 79 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccc
Confidence 58899999999999886432 2478999999999999999887654311 11 22234443211
Q ss_pred cccHHHHHHHHHHHccCCC--CCcCChHHHHHHHHHHh-----cCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEE
Q 000692 236 DFDVLRISKVILESITLSP--CELKDLNSVQLKLKEAL-----FKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRII 308 (1349)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~il 308 (1349)
..+-..+-.+-++..+... ...-.+++ ++.+.+.+ .+++-++|+|++..-.......+...+-.-. .+.+|
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fI 157 (314)
T PRK07399 80 QHQGKLITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLI 157 (314)
T ss_pred cccccccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEE
Confidence 0000000011111111000 01111222 22333333 3567789999996655556666666654333 33455
Q ss_pred EEe-cchhHHHhhcC-CceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHHH
Q 000692 309 VTT-RSVDVALTMGS-GGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARALG 378 (1349)
Q Consensus 309 vTt-R~~~v~~~~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 378 (1349)
++| +...+...+.. ...+++.++++++..+.+.+...... .......++..++|.|..+..+.
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-------~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-------LNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-------chhHHHHHHHHcCCCHHHHHHHH
Confidence 444 44344333322 24789999999999999987642111 01113567999999997665543
No 161
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.20 E-value=0.0041 Score=80.02 Aligned_cols=155 Identities=12% Similarity=0.091 Sum_probs=84.8
Q ss_pred ccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-----cCceEEEEecccccHHHHHH
Q 000692 170 AVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-----FDPKAWVCVSDDFDVLRISK 244 (1349)
Q Consensus 170 ~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~ 244 (1349)
.++||+.++++++..|.... ..-+.++|.+|+|||++|..++.+..... .+..+|.. ++..+.
T Consensus 174 ~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l~- 241 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGALI- 241 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHHh-
Confidence 49999999999999996533 23456899999999999999887642211 13333332 111111
Q ss_pred HHHHHccCCCCCcCChHHHHHHHHHHh-c-CCceEEEEeCCCCCC-------hhhHHHhhccCCCCCCCcEEEEEecchh
Q 000692 245 VILESITLSPCELKDLNSVQLKLKEAL-F-KKKYLIVLDDVWSKS-------YDLWQALKSPFMVGAPDSRIIVTTRSVD 315 (1349)
Q Consensus 245 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-~-~~~~LlVlDdv~~~~-------~~~~~~~~~~l~~~~~gs~ilvTtR~~~ 315 (1349)
. + .....+.+.....+.+.+ + +++.+|++|++..-. ..+...+..+.... ..-++|-+|...+
T Consensus 242 ---a--~--~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~-g~i~~IgaTt~~e 313 (852)
T TIGR03346 242 ---A--G--AKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR-GELHCIGATTLDE 313 (852)
T ss_pred ---h--c--chhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc-CceEEEEeCcHHH
Confidence 0 0 000112233322332232 2 468999999995321 01112222222221 2244555555443
Q ss_pred HHHhh-------cCCceEeCCCCChhhHHHHHHHHH
Q 000692 316 VALTM-------GSGGYCELKLLSDDDCWSVFVKHA 344 (1349)
Q Consensus 316 v~~~~-------~~~~~~~l~~L~~~~~~~l~~~~~ 344 (1349)
....+ .-...+.++..+.++..+++....
T Consensus 314 ~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 314 YRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 32111 122467899999999999887654
No 162
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.19 E-value=0.0061 Score=71.83 Aligned_cols=167 Identities=14% Similarity=0.059 Sum_probs=90.2
Q ss_pred CccccchhhHHHHHHHHhccCC-------CCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc----cCceEEEEecccc
Q 000692 169 PAVYGRDEDKARVLKIVLKIDP-------NDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED----FDPKAWVCVSDDF 237 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~-------~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~----f~~~~wv~~~~~~ 237 (1349)
..+.|.+..++++.+.+..+-. -+-..++-+.++|++|.|||++|+++++...... .....|+.+....
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e 261 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE 261 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh
Confidence 3477899999888887643110 0112356689999999999999999998754321 1234455443321
Q ss_pred cHHHHHHHHHHHccCCCCCcCChHHHHHHHHHH-hcCCceEEEEeCCCCCC-------hhh-----HHHhhccCCC--CC
Q 000692 238 DVLRISKVILESITLSPCELKDLNSVQLKLKEA-LFKKKYLIVLDDVWSKS-------YDL-----WQALKSPFMV--GA 302 (1349)
Q Consensus 238 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~-------~~~-----~~~~~~~l~~--~~ 302 (1349)
+ +...... .......+....++. -.+++.+|++|+++... ..+ ...+...+.. ..
T Consensus 262 ----L----l~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 262 ----L----LNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred ----h----cccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC
Confidence 1 1110000 000011111122221 23578999999995310 011 1223222221 12
Q ss_pred CCcEEEEEecchhHHH-hh-c---CCceEeCCCCChhhHHHHHHHHHh
Q 000692 303 PDSRIIVTTRSVDVAL-TM-G---SGGYCELKLLSDDDCWSVFVKHAF 345 (1349)
Q Consensus 303 ~gs~ilvTtR~~~v~~-~~-~---~~~~~~l~~L~~~~~~~l~~~~~~ 345 (1349)
.+..||.||...+... .+ . -...++++..+.++..++|..+..
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 3445566665543322 21 1 123689999999999999998873
No 163
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.19 E-value=6.6e-05 Score=68.37 Aligned_cols=92 Identities=26% Similarity=0.279 Sum_probs=77.5
Q ss_pred ccCCCcccEEEeccccccccCccccC-CCccceEEecCCCCcccccccccCCCCcEEEecCccCCCcCchhhhccccccE
Q 000692 577 LPKFKKLRVLSLRRYYITEVPISIGC-LRHLRYLNFSDTKIKCLPESVTSLLNLEILILRDCLHLLKLPSSIGNLVKLLH 655 (1349)
Q Consensus 577 ~~~l~~Lr~L~L~~~~i~~lp~~i~~-L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~ 655 (1349)
+.+..+|...+|++|.+..+|..|.. .+.+..|+|++|.|..+|..+..++.|+.|+++.| .+...|..|..|.+|-.
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDM 127 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHHH
Confidence 45667888889999999999887754 45899999999999999999999999999999998 77888888888999999
Q ss_pred EEecCCCccccCccc
Q 000692 656 LDIEGANLLSELPLR 670 (1349)
Q Consensus 656 L~l~~~~~~~~~p~~ 670 (1349)
|+..+|. ...+|..
T Consensus 128 Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 128 LDSPENA-RAEIDVD 141 (177)
T ss_pred hcCCCCc-cccCcHH
Confidence 9988877 5566644
No 164
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.15 E-value=0.00012 Score=77.97 Aligned_cols=87 Identities=21% Similarity=0.185 Sum_probs=61.8
Q ss_pred hccCCCcccEEEecccccc-----ccCccccCCCccceEEecCCC----Cccccccc-------ccCCCCcEEEecCccC
Q 000692 576 LLPKFKKLRVLSLRRYYIT-----EVPISIGCLRHLRYLNFSDTK----IKCLPESV-------TSLLNLEILILRDCLH 639 (1349)
Q Consensus 576 ~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~Lr~L~Ls~~~----i~~lp~~i-------~~L~~L~~L~l~~~~~ 639 (1349)
....+..+..++|++|.+. .+-..+.+.++||.-++|+-. ..++|+.+ -..++|++||||.|-.
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 3456778899999999876 244567778899999998742 23556543 4456899999998854
Q ss_pred CCcCchh----hhccccccEEEecCCC
Q 000692 640 LLKLPSS----IGNLVKLLHLDIEGAN 662 (1349)
Q Consensus 640 ~~~lp~~----i~~L~~L~~L~l~~~~ 662 (1349)
-..-++. +.+++.|++|.|.+|.
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCC
Confidence 4444433 5678889999998887
No 165
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.012 Score=63.56 Aligned_cols=188 Identities=16% Similarity=0.185 Sum_probs=109.8
Q ss_pred ccccchhhHHHHHHHHhccCC-------CCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHH
Q 000692 170 AVYGRDEDKARVLKIVLKIDP-------NDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRI 242 (1349)
Q Consensus 170 ~~~Gr~~~~~~l~~~l~~~~~-------~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 242 (1349)
.+=|-++.+++|.+...-+-. -+-..++-|.+||++|.|||-||++|+++.... | +.+...
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-F-----IrvvgS------ 219 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-F-----IRVVGS------ 219 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-E-----EEeccH------
Confidence 456778888888877643211 133567889999999999999999999975432 3 333322
Q ss_pred HHHHHHHccCCCCCcCChHHHHHHHHHHhcC-CceEEEEeCCCCC-----------Chhh---HHHhhccCCC--CCCCc
Q 000692 243 SKVILESITLSPCELKDLNSVQLKLKEALFK-KKYLIVLDDVWSK-----------SYDL---WQALKSPFMV--GAPDS 305 (1349)
Q Consensus 243 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~-----------~~~~---~~~~~~~l~~--~~~gs 305 (1349)
+++++.- .+-..+++.+.+..+. .+..|.+|.++.. +.+. .-++...+-. .....
T Consensus 220 --ElVqKYi------GEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nv 291 (406)
T COG1222 220 --ELVQKYI------GEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNV 291 (406)
T ss_pred --HHHHHHh------ccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCe
Confidence 2222221 1224455556555544 5889999988431 1111 1223333322 13467
Q ss_pred EEEEEecchhHHHh--hcC---CceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCCh----HHHHH
Q 000692 306 RIIVTTRSVDVALT--MGS---GGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLP----LAARA 376 (1349)
Q Consensus 306 ~ilvTtR~~~v~~~--~~~---~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P----Lal~~ 376 (1349)
|||.+|-..++.+. +.+ .+.++++.-+.+.-.++|+-|. +.....++-+++.+ ++.+.|.- -|+.+
T Consensus 292 KVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHt-rkM~l~~dvd~e~l----a~~~~g~sGAdlkaict 366 (406)
T COG1222 292 KVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHT-RKMNLADDVDLELL----ARLTEGFSGADLKAICT 366 (406)
T ss_pred EEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHh-hhccCccCcCHHHH----HHhcCCCchHHHHHHHH
Confidence 89988876655432 222 3468888666666667777776 33333444455544 67777654 44555
Q ss_pred HHHhhc
Q 000692 377 LGGLLR 382 (1349)
Q Consensus 377 ~~~~l~ 382 (1349)
=|++++
T Consensus 367 EAGm~A 372 (406)
T COG1222 367 EAGMFA 372 (406)
T ss_pred HHhHHH
Confidence 566654
No 166
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.13 E-value=8.9e-05 Score=87.66 Aligned_cols=99 Identities=28% Similarity=0.447 Sum_probs=79.5
Q ss_pred CCCcccEEEeccccccccCccccCCCccceEEecCCCCcccccccccCCCCcEEEecCccCCCcCchhhhccccccEEEe
Q 000692 579 KFKKLRVLSLRRYYITEVPISIGCLRHLRYLNFSDTKIKCLPESVTSLLNLEILILRDCLHLLKLPSSIGNLVKLLHLDI 658 (1349)
Q Consensus 579 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 658 (1349)
.+..+..+.+..|.|..+-..++.+.+|.+|++.+|.|+.+...+..+.+|++|++++| .+..+. ++..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-cccccc-chhhccchhhhee
Confidence 45667777788999988767789999999999999999998777899999999999998 666664 4788888999999
Q ss_pred cCCCccccCccccccCcCCCCCC
Q 000692 659 EGANLLSELPLRMKELKCLQTLT 681 (1349)
Q Consensus 659 ~~~~~~~~~p~~i~~L~~L~~L~ 681 (1349)
.+|. +..++ ++..+++|+.+.
T Consensus 148 ~~N~-i~~~~-~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 148 SGNL-ISDIS-GLESLKSLKLLD 168 (414)
T ss_pred ccCc-chhcc-CCccchhhhccc
Confidence 9998 55443 344456666553
No 167
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0079 Score=73.26 Aligned_cols=126 Identities=21% Similarity=0.266 Sum_probs=79.5
Q ss_pred CccccchhhHHHHHHHHhccCCC---CCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPN---DDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKV 245 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~---~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 245 (1349)
..++|.+..+..+.+.+...... .+...++....|+.|||||.||++++...-.. =+..+-++.|+.... ..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~-e~aliR~DMSEy~Ek----Hs 565 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD-EQALIRIDMSEYMEK----HS 565 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCC-CccceeechHHHHHH----HH
Confidence 46999999999999988764431 23446788889999999999999988753211 133344444433221 12
Q ss_pred HHHHccCCCCCcCChHHHHHHHHHHhcCCce-EEEEeCCCCCChhhHHHhhccCCCC
Q 000692 246 ILESITLSPCELKDLNSVQLKLKEALFKKKY-LIVLDDVWSKSYDLWQALKSPFMVG 301 (1349)
Q Consensus 246 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~~~~~~~~~~~~l~~~ 301 (1349)
+.+-++.++... ..++ ...+.+..+.++| +|.||++....++....+...+-++
T Consensus 566 VSrLIGaPPGYV-Gyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 566 VSRLIGAPPGYV-GYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred HHHHhCCCCCCc-eecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 333344444311 1111 2235556677888 7888999888888887777766543
No 168
>PRK08116 hypothetical protein; Validated
Probab=97.09 E-value=0.0022 Score=70.08 Aligned_cols=103 Identities=23% Similarity=0.204 Sum_probs=58.6
Q ss_pred EEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCce
Q 000692 197 RLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKKKY 276 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 276 (1349)
..+.++|..|+|||.||.++++....+ ...+++++ ..+++..+....... ...+.. .+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~-~~~v~~~~------~~~ll~~i~~~~~~~--~~~~~~----~~~~~l~~~d- 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK-GVPVIFVN------FPQLLNRIKSTYKSS--GKEDEN----EIIRSLVNAD- 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEE------HHHHHHHHHHHHhcc--ccccHH----HHHHHhcCCC-
Confidence 468999999999999999999976433 23455665 333444554443211 111111 2333344444
Q ss_pred EEEEeCCCCCChhhHHH--hhccCCC-CCCCcEEEEEecc
Q 000692 277 LIVLDDVWSKSYDLWQA--LKSPFMV-GAPDSRIIVTTRS 313 (1349)
Q Consensus 277 LlVlDdv~~~~~~~~~~--~~~~l~~-~~~gs~ilvTtR~ 313 (1349)
|||+||+......+|.. +...+-. -..|..+||||..
T Consensus 181 lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 89999995443345543 2221111 1245668999874
No 169
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.09 E-value=0.0061 Score=70.36 Aligned_cols=179 Identities=18% Similarity=0.143 Sum_probs=96.6
Q ss_pred CccccchhhHHHHHHHHhccCC-------CCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDP-------NDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLR 241 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~-------~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 241 (1349)
..+.|.+..++++.+.+..+-. -+-..++.|.++|++|.|||++|+++++..... | +.+..+ .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~-f---i~i~~s------~ 214 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT-F---IRVVGS------E 214 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC-E---EEEehH------H
Confidence 3588988888888776642110 022346788999999999999999999865422 2 222111 1
Q ss_pred HHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCceEEEEeCCCCC-----------Chh---hHHHhhccCC--CCCCCc
Q 000692 242 ISKVILESITLSPCELKDLNSVQLKLKEALFKKKYLIVLDDVWSK-----------SYD---LWQALKSPFM--VGAPDS 305 (1349)
Q Consensus 242 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------~~~---~~~~~~~~l~--~~~~gs 305 (1349)
+ ...... .....+.+.+.......+.+|++|+++.. +.. .+..+...+. ....+.
T Consensus 215 l----~~k~~g-----e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v 285 (398)
T PTZ00454 215 F----VQKYLG-----EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNV 285 (398)
T ss_pred H----HHHhcc-----hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCE
Confidence 1 111100 01111222233333567899999997431 000 1122222221 123456
Q ss_pred EEEEEecchhHHHh--hc---CCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCCh
Q 000692 306 RIIVTTRSVDVALT--MG---SGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLP 371 (1349)
Q Consensus 306 ~ilvTtR~~~v~~~--~~---~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 371 (1349)
.||+||...+.... .. -...++++..+.++..++|..+..... ...+.++. ++++...|.-
T Consensus 286 ~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~-l~~dvd~~----~la~~t~g~s 351 (398)
T PTZ00454 286 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMN-LSEEVDLE----DFVSRPEKIS 351 (398)
T ss_pred EEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCC-CCcccCHH----HHHHHcCCCC
Confidence 78888876543321 11 234688998999998888887663322 22222333 4466666653
No 170
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.04 E-value=0.037 Score=62.38 Aligned_cols=208 Identities=15% Similarity=0.146 Sum_probs=125.5
Q ss_pred chhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHH-HHHHcCCCCcccCceEEEEeccc---ccHHHHHHHHHHH
Q 000692 174 RDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLA-REVYNDKSVEDFDPKAWVCVSDD---FDVLRISKVILES 249 (1349)
Q Consensus 174 r~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa-~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~ 249 (1349)
|.+..+++..||.+... ..|.|.|+-|+||+.|+ .++.++.+ .+..++|.+- .+-...++.++.+
T Consensus 1 R~e~~~~L~~wL~e~~~------TFIvV~GPrGSGK~elV~d~~L~~r~-----~vL~IDC~~i~~ar~D~~~I~~lA~q 69 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPN------TFIVVQGPRGSGKRELVMDHVLKDRK-----NVLVIDCDQIVKARGDAAFIKNLASQ 69 (431)
T ss_pred CchHHHHHHHHHhcCCC------eEEEEECCCCCCccHHHHHHHHhCCC-----CEEEEEChHhhhccChHHHHHHHHHh
Confidence 56778999999976543 69999999999999999 67666532 2556655432 2233455555555
Q ss_pred ccCCC-----------------------CC-cCChH-HHH-------HHHHHH-------------------hc---CCc
Q 000692 250 ITLSP-----------------------CE-LKDLN-SVQ-------LKLKEA-------------------LF---KKK 275 (1349)
Q Consensus 250 l~~~~-----------------------~~-~~~~~-~~~-------~~l~~~-------------------l~---~~~ 275 (1349)
+|--+ .. ..+.+ ++. ..+++. +. .+|
T Consensus 70 vGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~ 149 (431)
T PF10443_consen 70 VGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERR 149 (431)
T ss_pred cCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccC
Confidence 54321 11 11111 111 111110 00 126
Q ss_pred eEEEEeCCCCCC---------hhhHHHhhccCCCCCCCcEEEEEecchhHHHh----hc--CCceEeCCCCChhhHHHHH
Q 000692 276 YLIVLDDVWSKS---------YDLWQALKSPFMVGAPDSRIIVTTRSVDVALT----MG--SGGYCELKLLSDDDCWSVF 340 (1349)
Q Consensus 276 ~LlVlDdv~~~~---------~~~~~~~~~~l~~~~~gs~ilvTtR~~~v~~~----~~--~~~~~~l~~L~~~~~~~l~ 340 (1349)
=+||+||..... ..+|..... ..+-.+||++|-+...... +. ..+.+.+...+.+.|..+.
T Consensus 150 PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv----~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV 225 (431)
T PF10443_consen 150 PVVVIDNFLHKAEENDFIYDKLAEWAASLV----QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYV 225 (431)
T ss_pred CEEEEcchhccCcccchHHHHHHHHHHHHH----hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHH
Confidence 789999985422 124554332 2355789999987555443 32 2346889999999999999
Q ss_pred HHHHhcCCCC------------CCc----hhHHHHHHHHHHHhCCChHHHHHHHHhhccCCChH-HHHHHHhh
Q 000692 341 VKHAFESRDA------------GTH----ENLESIRQKVVEKCKGLPLAARALGGLLRSRQRFV-EWDDILDS 396 (1349)
Q Consensus 341 ~~~~~~~~~~------------~~~----~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~-~w~~~~~~ 396 (1349)
..+....... .+. .....-....++.+||--.-+..+++.++...++. .-+.+.++
T Consensus 226 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~q 298 (431)
T PF10443_consen 226 LSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQ 298 (431)
T ss_pred HHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9887443111 000 11222235678999999999999999999887654 33444443
No 171
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.04 E-value=0.0064 Score=70.61 Aligned_cols=158 Identities=16% Similarity=0.134 Sum_probs=87.8
Q ss_pred CccccchhhHHHHHHHHhccCC-------CCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDP-------NDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLR 241 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~-------~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 241 (1349)
..+.|.+..++++.+.+.-.-. -+-...+.|.++|++|+|||++|+++++..... | +.+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~-f---i~V~~se------ 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSAT-F---LRVVGSE------ 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCC-E---EEEecch------
Confidence 3578899998888887742110 012345678899999999999999999865322 3 1222111
Q ss_pred HHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCceEEEEeCCCCCC-----------hhh---HHHhhccCC--CCCCCc
Q 000692 242 ISKVILESITLSPCELKDLNSVQLKLKEALFKKKYLIVLDDVWSKS-----------YDL---WQALKSPFM--VGAPDS 305 (1349)
Q Consensus 242 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-----------~~~---~~~~~~~l~--~~~~gs 305 (1349)
+. ..... .....+...+.....+.+.+|++|+++... .+. ...+...+. ....+.
T Consensus 253 L~----~k~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V 323 (438)
T PTZ00361 253 LI----QKYLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDV 323 (438)
T ss_pred hh----hhhcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCe
Confidence 11 11100 001111222222334678899999973210 000 111221111 113456
Q ss_pred EEEEEecchhHHHh-h-c---CCceEeCCCCChhhHHHHHHHHHh
Q 000692 306 RIIVTTRSVDVALT-M-G---SGGYCELKLLSDDDCWSVFVKHAF 345 (1349)
Q Consensus 306 ~ilvTtR~~~v~~~-~-~---~~~~~~l~~L~~~~~~~l~~~~~~ 345 (1349)
+||.||...+.... + . ....+++...+.++..++|..+..
T Consensus 324 ~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 324 KVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred EEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 78888876544432 1 1 124689999999999999998764
No 172
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.02 E-value=0.0062 Score=77.96 Aligned_cols=154 Identities=11% Similarity=0.093 Sum_probs=83.4
Q ss_pred ccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-----cCceEEE-EecccccHHHHH
Q 000692 170 AVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-----FDPKAWV-CVSDDFDVLRIS 243 (1349)
Q Consensus 170 ~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-----f~~~~wv-~~~~~~~~~~~~ 243 (1349)
.++||+.++++++..|..... .-+.++|.+|+|||++|+.++....... .+..+|. .++. +.
T Consensus 179 ~vigr~~ei~~~i~iL~r~~~------~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l~ 246 (857)
T PRK10865 179 PVIGRDEEIRRTIQVLQRRTK------NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV 246 (857)
T ss_pred cCCCCHHHHHHHHHHHhcCCc------CceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------hh
Confidence 499999999999999965432 3466999999999999999988653211 1233322 2221 11
Q ss_pred HHHHHHccCCCCCcCChHHHHHHHHHHh--cCCceEEEEeCCCCCC-------hhhHHHhhccCCCCCCCcEEEEEecch
Q 000692 244 KVILESITLSPCELKDLNSVQLKLKEAL--FKKKYLIVLDDVWSKS-------YDLWQALKSPFMVGAPDSRIIVTTRSV 314 (1349)
Q Consensus 244 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~-------~~~~~~~~~~l~~~~~gs~ilvTtR~~ 314 (1349)
. . .....+.++....+.+.+ .+++.+|++|++..-. ..+-..+..+.... ..-++|-||...
T Consensus 247 a----g----~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~-g~l~~IgaTt~~ 317 (857)
T PRK10865 247 A----G----AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR-GELHCVGATTLD 317 (857)
T ss_pred h----c----cchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc-CCCeEEEcCCCH
Confidence 0 0 001112222222222221 2578999999985321 00112232222221 234556555544
Q ss_pred hHHHhh-------cCCceEeCCCCChhhHHHHHHHHH
Q 000692 315 DVALTM-------GSGGYCELKLLSDDDCWSVFVKHA 344 (1349)
Q Consensus 315 ~v~~~~-------~~~~~~~l~~L~~~~~~~l~~~~~ 344 (1349)
+....+ .-...+.+...+.++..++++...
T Consensus 318 e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 318 EYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 432111 112356677778899999886554
No 173
>PRK10536 hypothetical protein; Provisional
Probab=97.01 E-value=0.0042 Score=65.40 Aligned_cols=135 Identities=13% Similarity=0.146 Sum_probs=75.6
Q ss_pred ccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-cCceEEEEe----cc-----ccc-
Q 000692 170 AVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-FDPKAWVCV----SD-----DFD- 238 (1349)
Q Consensus 170 ~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~~~~wv~~----~~-----~~~- 238 (1349)
.+.+|.........++.. ...|.+.|.+|.|||+||.+++.+.-..+ |+.++-..- .+ +-+
T Consensus 56 ~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~ 127 (262)
T PRK10536 56 PILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDI 127 (262)
T ss_pred cccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCH
Confidence 467788888888888853 24899999999999999999877432122 543333211 11 001
Q ss_pred ---HHHHHHHHHHHccCCCCCcCChHHHHH--------HHHHHhcCCce---EEEEeCCCCCChhhHHHhhccCCCCCCC
Q 000692 239 ---VLRISKVILESITLSPCELKDLNSVQL--------KLKEALFKKKY---LIVLDDVWSKSYDLWQALKSPFMVGAPD 304 (1349)
Q Consensus 239 ---~~~~~~~i~~~l~~~~~~~~~~~~~~~--------~l~~~l~~~~~---LlVlDdv~~~~~~~~~~~~~~l~~~~~g 304 (1349)
+...++-+.+.+..-- .....+.... .-..+++++.+ +||+|++.+-+..+...+.... +.+
T Consensus 128 ~eK~~p~~~pi~D~L~~~~-~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~---g~~ 203 (262)
T PRK10536 128 AEKFAPYFRPVYDVLVRRL-GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRL---GEN 203 (262)
T ss_pred HHHHHHHHHHHHHHHHHHh-ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhc---CCC
Confidence 1111222222221100 0001111100 01245567654 9999999887666655655544 478
Q ss_pred cEEEEEecchhH
Q 000692 305 SRIIVTTRSVDV 316 (1349)
Q Consensus 305 s~ilvTtR~~~v 316 (1349)
|++|+|--..++
T Consensus 204 sk~v~~GD~~Qi 215 (262)
T PRK10536 204 VTVIVNGDITQC 215 (262)
T ss_pred CEEEEeCChhhc
Confidence 999998765433
No 174
>CHL00176 ftsH cell division protein; Validated
Probab=96.99 E-value=0.01 Score=72.64 Aligned_cols=177 Identities=17% Similarity=0.221 Sum_probs=95.5
Q ss_pred CccccchhhHHHHHHHH---hccCC---CCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHH
Q 000692 169 PAVYGRDEDKARVLKIV---LKIDP---NDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRI 242 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l---~~~~~---~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 242 (1349)
..+.|.++..+++.+.+ ..... -+....+-|.++|++|+|||++|++++...... |+.++.. ++
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p------~i~is~s----~f 252 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP------FFSISGS----EF 252 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC------eeeccHH----HH
Confidence 34778776665555443 22211 012235678999999999999999998864322 2222211 11
Q ss_pred HHHHHHHccCCCCCcCChHHHHHHHHHHhcCCceEEEEeCCCCCC----------hhhH----HHhhccCC--CCCCCcE
Q 000692 243 SKVILESITLSPCELKDLNSVQLKLKEALFKKKYLIVLDDVWSKS----------YDLW----QALKSPFM--VGAPDSR 306 (1349)
Q Consensus 243 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------~~~~----~~~~~~l~--~~~~gs~ 306 (1349)
.... .+ .........+.+.....+.+|++||++.-. .+.+ ..+...+. ....+..
T Consensus 253 ~~~~---~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~Vi 323 (638)
T CHL00176 253 VEMF---VG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVI 323 (638)
T ss_pred HHHh---hh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCee
Confidence 1000 00 011222333444556788999999994320 1122 22222221 1234566
Q ss_pred EEEEecchhHHH-hh-c---CCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCC
Q 000692 307 IIVTTRSVDVAL-TM-G---SGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKG 369 (1349)
Q Consensus 307 ilvTtR~~~v~~-~~-~---~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 369 (1349)
||.||...+... .+ . -...+.++..+.++-.++++.++.... ... ......+++.+.|
T Consensus 324 VIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~-~~~----d~~l~~lA~~t~G 386 (638)
T CHL00176 324 VIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK-LSP----DVSLELIARRTPG 386 (638)
T ss_pred EEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc-cch----hHHHHHHHhcCCC
Confidence 777776644332 11 1 224688888999999999988874311 111 2233566777777
No 175
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.96 E-value=0.022 Score=63.29 Aligned_cols=186 Identities=12% Similarity=0.096 Sum_probs=95.6
Q ss_pred hhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-cC-----ceEEEEecccccHHHHHHHHHHH
Q 000692 176 EDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-FD-----PKAWVCVSDDFDVLRISKVILES 249 (1349)
Q Consensus 176 ~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~-----~~~wv~~~~~~~~~~~~~~i~~~ 249 (1349)
...+++...+..+ .-...+.++|+.|+||+++|..+++..--.. .. ++-|+..+..+|+..+... -+.
T Consensus 11 ~~~~~l~~~~~~~-----rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~-p~~ 84 (319)
T PRK08769 11 RAYDQTVAALDAG-----RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFI-PNR 84 (319)
T ss_pred HHHHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecC-CCc
Confidence 3455666666432 2356789999999999999998876432111 10 0001111111110000000 000
Q ss_pred ccCCCCCcCChHHHHHHHHHHh-----cCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecc-hhHHHhhcC-
Q 000692 250 ITLSPCELKDLNSVQLKLKEAL-----FKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRS-VDVALTMGS- 322 (1349)
Q Consensus 250 l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~-~~v~~~~~~- 322 (1349)
-+.+....-.+++ ++.+.+.+ .+++=++|+|+++.-....-..+...+-.-..++.+|++|.+ ..+...+..
T Consensus 85 ~~~k~~~~I~idq-IR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSR 163 (319)
T PRK08769 85 TGDKLRTEIVIEQ-VREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSR 163 (319)
T ss_pred ccccccccccHHH-HHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhh
Confidence 0000000011222 12222222 245668999999665544455565555444456767766664 333332222
Q ss_pred CceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHHH
Q 000692 323 GGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARALG 378 (1349)
Q Consensus 323 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 378 (1349)
-..+.+.+++.+++.+.+.... . + ...+..++..++|.|+.+..+.
T Consensus 164 Cq~i~~~~~~~~~~~~~L~~~~----~--~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 164 CQRLEFKLPPAHEALAWLLAQG----V--S----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred heEeeCCCcCHHHHHHHHHHcC----C--C----hHHHHHHHHHcCCCHHHHHHHh
Confidence 2368899999999988886431 1 1 1224567999999998765444
No 176
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.96 E-value=0.0095 Score=57.44 Aligned_cols=86 Identities=21% Similarity=0.339 Sum_probs=73.9
Q ss_pred chhhHHHHHHHHHHHHHHhhHHHHHHhhhhChHHHHHHHHHHHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhchHH
Q 000692 2 PVAELFLAAFLQVLFERLMSSDLLKLAGREGVRSKLKAWEKTLKTIEAVLIDAEEKQLT-NRAVKIWLDDLRDLAYDAED 80 (1349)
Q Consensus 2 ~~a~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~-~~~~~~wl~~lr~~~yd~ed 80 (1349)
|+|+.+++||+|.+++.+...+.........++.-+++|..+++.|..++++.+..... +..-+.-++++.+...++++
T Consensus 1 ~~~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~ 80 (147)
T PF05659_consen 1 PIAELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKE 80 (147)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHH
Confidence 58999999999999999998888888888889999999999999999999998875432 33337788899999999999
Q ss_pred HHHHhhh
Q 000692 81 ILDEFAS 87 (1349)
Q Consensus 81 ~ld~~~~ 87 (1349)
+++.|..
T Consensus 81 LV~k~sk 87 (147)
T PF05659_consen 81 LVEKCSK 87 (147)
T ss_pred HHHHhcc
Confidence 9999853
No 177
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=0.00042 Score=71.81 Aligned_cols=85 Identities=24% Similarity=0.275 Sum_probs=56.3
Q ss_pred cCCCcccEEEecccccc---ccCccccCCCccceEEecCCCCccccccc-ccCCCCcEEEecCccCCC-cCchhhhcccc
Q 000692 578 PKFKKLRVLSLRRYYIT---EVPISIGCLRHLRYLNFSDTKIKCLPESV-TSLLNLEILILRDCLHLL-KLPSSIGNLVK 652 (1349)
Q Consensus 578 ~~l~~Lr~L~L~~~~i~---~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i-~~L~~L~~L~l~~~~~~~-~lp~~i~~L~~ 652 (1349)
...+.++.|||.+|.|+ ++-.-+.+|++|++|+|+.|.+..--.+. ..+.+|++|-|.+++.-. .....+..+++
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 34577888888888876 34444567888888888888654221222 356788888888764332 33344667777
Q ss_pred ccEEEecCCC
Q 000692 653 LLHLDIEGAN 662 (1349)
Q Consensus 653 L~~L~l~~~~ 662 (1349)
++.|+++.|+
T Consensus 148 vtelHmS~N~ 157 (418)
T KOG2982|consen 148 VTELHMSDNS 157 (418)
T ss_pred hhhhhhccch
Confidence 7777777764
No 178
>PRK08118 topology modulation protein; Reviewed
Probab=96.94 E-value=0.00053 Score=69.01 Aligned_cols=33 Identities=36% Similarity=0.636 Sum_probs=28.1
Q ss_pred EEEEEccCCChHHHHHHHHHcCCCCcc--cCceEE
Q 000692 198 LIPIVGMGGIGKTTLAREVYNDKSVED--FDPKAW 230 (1349)
Q Consensus 198 vv~i~G~gGiGKTtLa~~~~~~~~~~~--f~~~~w 230 (1349)
.|.|+|++|+||||+|+.+++...... ||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 589999999999999999998876543 787776
No 179
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.92 E-value=0.018 Score=65.27 Aligned_cols=160 Identities=11% Similarity=-0.019 Sum_probs=87.4
Q ss_pred ccc-chhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-cCceEEEEecccccHHHHHHHHHH
Q 000692 171 VYG-RDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-FDPKAWVCVSDDFDVLRISKVILE 248 (1349)
Q Consensus 171 ~~G-r~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~ 248 (1349)
++| .+...+.+...+... .-.....++|+.|+||||+|+.+++..--.. .... .+... ...+.+..
T Consensus 7 i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---~cg~C----~~c~~~~~ 74 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---PCGTC----TNCKRIDS 74 (329)
T ss_pred HHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCcC----HHHHHHhc
Confidence 556 666777777777532 2356779999999999999999866532111 1000 00000 01111110
Q ss_pred HccC------CCCCcCChHHHHHHHHHH----hcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecch-hHH
Q 000692 249 SITL------SPCELKDLNSVQLKLKEA----LFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRSV-DVA 317 (1349)
Q Consensus 249 ~l~~------~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~-~v~ 317 (1349)
.-.. ........++..+.+... ..+++=++|+|++..-.......+...+-.-..++.+|++|.+. .+.
T Consensus 75 ~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll 154 (329)
T PRK08058 75 GNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQIL 154 (329)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCc
Confidence 0000 000111122222222111 23455679999996665556667777776555677777777653 333
Q ss_pred HhhcC-CceEeCCCCChhhHHHHHHH
Q 000692 318 LTMGS-GGYCELKLLSDDDCWSVFVK 342 (1349)
Q Consensus 318 ~~~~~-~~~~~l~~L~~~~~~~l~~~ 342 (1349)
..+.. ...+++.++++++..+.+..
T Consensus 155 ~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 155 PTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 22222 24689999999999887764
No 180
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.92 E-value=0.031 Score=65.97 Aligned_cols=76 Identities=18% Similarity=0.283 Sum_probs=57.6
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHh-
Q 000692 193 DSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEAL- 271 (1349)
Q Consensus 193 ~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l- 271 (1349)
.+.-++..++|++|+||||||.-++++.. | .++=|++|+..+...+-..|...+.... .+
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaG---Y-sVvEINASDeRt~~~v~~kI~~avq~~s---------------~l~ 383 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAG---Y-SVVEINASDERTAPMVKEKIENAVQNHS---------------VLD 383 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcC---c-eEEEecccccccHHHHHHHHHHHHhhcc---------------ccc
Confidence 45678999999999999999999998643 4 3778899998888877777766654321 12
Q ss_pred -cCCceEEEEeCCCCCC
Q 000692 272 -FKKKYLIVLDDVWSKS 287 (1349)
Q Consensus 272 -~~~~~LlVlDdv~~~~ 287 (1349)
.+++.-+|+|.++...
T Consensus 384 adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 384 ADSRPVCLVIDEIDGAP 400 (877)
T ss_pred cCCCcceEEEecccCCc
Confidence 2678889999986543
No 181
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.91 E-value=0.029 Score=61.42 Aligned_cols=54 Identities=22% Similarity=0.288 Sum_probs=34.1
Q ss_pred hHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHH
Q 000692 177 DKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRI 242 (1349)
Q Consensus 177 ~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 242 (1349)
-++++..++..+ +.|.+.|.+|+|||++|+.+++... ...+++++....+..++
T Consensus 10 l~~~~l~~l~~g--------~~vLL~G~~GtGKT~lA~~la~~lg----~~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 10 VTSRALRYLKSG--------YPVHLRGPAGTGKTTLAMHVARKRD----RPVMLINGDAELTTSDL 63 (262)
T ss_pred HHHHHHHHHhcC--------CeEEEEcCCCCCHHHHHHHHHHHhC----CCEEEEeCCccCCHHHH
Confidence 345555555422 3567999999999999999987431 13445555554444443
No 182
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.89 E-value=0.00012 Score=77.95 Aligned_cols=86 Identities=16% Similarity=0.167 Sum_probs=56.2
Q ss_pred CCCCccceEEEcccCCcc----ccccccCccccccceEEeccCCc----ccccccccCCCCcceEEecCCCCCc----cc
Q 000692 1125 QLPVTLKRLDIQMCSNFM----VLTSECQLPEVLEELKIVSCPKL----ESIAETFFDNARLRSIQIKDCDNLR----SI 1192 (1349)
Q Consensus 1125 ~~~~~L~~L~l~~~~~l~----~~~~~~~~~~~L~~L~L~~~~~l----~~~~~~~~~l~~L~~L~l~~~~~l~----~l 1192 (1349)
...+.|+++...+|..-. .+...+...+.|+.+.+..|..- +.+...+..+++|+.|+|.+|.... .+
T Consensus 154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 456678888777765332 12223445567888888775322 2334456678999999999986332 23
Q ss_pred cccCCCCCCcceEEeecC
Q 000692 1193 PKGLHNLSYLHCISIEHC 1210 (1349)
Q Consensus 1193 p~~~~~l~~L~~L~l~~c 1210 (1349)
...++.+++|+.|+++.|
T Consensus 234 akaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDC 251 (382)
T ss_pred HHHhcccchheeeccccc
Confidence 445777888999999998
No 183
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.88 E-value=0.021 Score=72.85 Aligned_cols=53 Identities=23% Similarity=0.346 Sum_probs=39.9
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCC
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKS 221 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~ 221 (1349)
..++|.+..++++.+++......+.....++.++|++|+|||++|+.+++...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 45889999999998876532211222345899999999999999999998754
No 184
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.87 E-value=0.017 Score=69.88 Aligned_cols=178 Identities=19% Similarity=0.188 Sum_probs=93.4
Q ss_pred CccccchhhHHHHHHHHh---ccCC---CCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHH
Q 000692 169 PAVYGRDEDKARVLKIVL---KIDP---NDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRI 242 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~---~~~~---~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 242 (1349)
..++|.+..++++.+++. ..+. .+....+-+.++|++|+|||++|+.++...... ++.++.. ++
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~------~~~i~~~----~~ 124 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP------FFSISGS----DF 124 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC------eeeccHH----HH
Confidence 357888777666655443 1110 012334568899999999999999998865432 1222211 11
Q ss_pred HHHHHHHccCCCCCcCChHHHHHHHHHHhcCCceEEEEeCCCCCC----------hhhHHH----hhccCC--CCCCCcE
Q 000692 243 SKVILESITLSPCELKDLNSVQLKLKEALFKKKYLIVLDDVWSKS----------YDLWQA----LKSPFM--VGAPDSR 306 (1349)
Q Consensus 243 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------~~~~~~----~~~~l~--~~~~gs~ 306 (1349)
.... .+ .....+...+.......+.+|++||++.-. .+.+.. +...+. ....+..
T Consensus 125 ~~~~---~g------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~ 195 (495)
T TIGR01241 125 VEMF---VG------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVI 195 (495)
T ss_pred HHHH---hc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeE
Confidence 1110 00 011222333344445678999999994310 111222 221111 1223455
Q ss_pred EEEEecchhHH-Hhh----cCCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCC
Q 000692 307 IIVTTRSVDVA-LTM----GSGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGL 370 (1349)
Q Consensus 307 ilvTtR~~~v~-~~~----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 370 (1349)
||.||...... ..+ .-...+.++..+.++-.++|..+...... ..... ...+++.+.|.
T Consensus 196 vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~~~----l~~la~~t~G~ 259 (495)
T TIGR01241 196 VIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APDVD----LKAVARRTPGF 259 (495)
T ss_pred EEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccchh----HHHHHHhCCCC
Confidence 66667654322 111 12346889999998889999877643221 11112 24667888774
No 185
>PRK07261 topology modulation protein; Provisional
Probab=96.87 E-value=0.0025 Score=64.50 Aligned_cols=65 Identities=25% Similarity=0.358 Sum_probs=41.4
Q ss_pred EEEEEccCCChHHHHHHHHHcCCCCcc--cCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCc
Q 000692 198 LIPIVGMGGIGKTTLAREVYNDKSVED--FDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKKK 275 (1349)
Q Consensus 198 vv~i~G~gGiGKTtLa~~~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 275 (1349)
.|.|+|++|+||||||+++........ .|...|-... ...+.++....+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW---------------------QERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc---------------------ccCCHHHHHHHHHHHHhCCC
Confidence 478999999999999999987654332 5666663211 11223344455555666666
Q ss_pred eEEEEeCCCC
Q 000692 276 YLIVLDDVWS 285 (1349)
Q Consensus 276 ~LlVlDdv~~ 285 (1349)
.|+|+...
T Consensus 61 --wIidg~~~ 68 (171)
T PRK07261 61 --WIIDGNYS 68 (171)
T ss_pred --EEEcCcch
Confidence 57788743
No 186
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.86 E-value=0.0052 Score=68.53 Aligned_cols=102 Identities=18% Similarity=0.162 Sum_probs=65.2
Q ss_pred hHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCc-eEEEEeccc-ccHHHHHHHHHHHccCCC
Q 000692 177 DKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDP-KAWVCVSDD-FDVLRISKVILESITLSP 254 (1349)
Q Consensus 177 ~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~-~~wv~~~~~-~~~~~~~~~i~~~l~~~~ 254 (1349)
-..++++.+..-. ..+.+.|+|.+|+|||||++.+++.......+. ++|+.+.+. ..+.++.+.+...+....
T Consensus 119 ~~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast 193 (380)
T PRK12608 119 LSMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAST 193 (380)
T ss_pred hhHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeec
Confidence 3455777776432 235669999999999999999887653332344 467777654 467788888888776543
Q ss_pred CCcCChH-----HHHHHHHHHh--cCCceEEEEeCC
Q 000692 255 CELKDLN-----SVQLKLKEAL--FKKKYLIVLDDV 283 (1349)
Q Consensus 255 ~~~~~~~-----~~~~~l~~~l--~~~~~LlVlDdv 283 (1349)
.+..... .....+.+++ ++++++||+|++
T Consensus 194 ~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 194 FDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 2222211 1112222232 589999999999
No 187
>PTZ00494 tuzin-like protein; Provisional
Probab=96.80 E-value=0.52 Score=52.92 Aligned_cols=168 Identities=14% Similarity=0.159 Sum_probs=100.2
Q ss_pred CCCCccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHH
Q 000692 166 PNEPAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKV 245 (1349)
Q Consensus 166 ~~~~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 245 (1349)
.....+|.|++|-..+...|...+ ...++++.+.|.-|.||++|.+........ ..++|++....| -++.
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld---~aHPRIvV~TG~~GcGKSslcRsAvrkE~~----paV~VDVRg~ED---tLrs 437 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMA---PSHPRIVALAGGSGGGRCVPCRRAVRVEGV----ALVHVDVGGTED---TLRS 437 (664)
T ss_pred cccccccchhhHHHHHHHHHhhcc---CCCCcEEEEecCCCCCchHHHHHHHHHcCC----CeEEEEecCCcc---hHHH
Confidence 445679999998888887776543 357899999999999999999998776443 467788876543 5678
Q ss_pred HHHHccCCCCCc-CC-hHHHHHHH---HHHhcCCceEEEEeCCCCCCh-hhHHHhhccCCCCCCCcEEEEEecchhHHHh
Q 000692 246 ILESITLSPCEL-KD-LNSVQLKL---KEALFKKKYLIVLDDVWSKSY-DLWQALKSPFMVGAPDSRIIVTTRSVDVALT 319 (1349)
Q Consensus 246 i~~~l~~~~~~~-~~-~~~~~~~l---~~~l~~~~~LlVlDdv~~~~~-~~~~~~~~~l~~~~~gs~ilvTtR~~~v~~~ 319 (1349)
+++.++.+.-+. .| ++-..+.. +....++.-+||+-==...+. ..+.+. ..+...-.-|+|++----+.+--.
T Consensus 438 VVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EVplESLT~~ 516 (664)
T PTZ00494 438 VVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAVPMKALTPL 516 (664)
T ss_pred HHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeechHhhhchh
Confidence 888888764322 22 22222222 223456666677632211110 111111 122233345667654432222111
Q ss_pred hcC---CceEeCCCCChhhHHHHHHHHH
Q 000692 320 MGS---GGYCELKLLSDDDCWSVFVKHA 344 (1349)
Q Consensus 320 ~~~---~~~~~l~~L~~~~~~~l~~~~~ 344 (1349)
... -..|.+++++.++|.+...+..
T Consensus 517 n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 517 NVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hccCccceeEecCCcCHHHHHHHHhccc
Confidence 111 1358899999999998876543
No 188
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.78 E-value=0.001 Score=82.04 Aligned_cols=109 Identities=20% Similarity=0.244 Sum_probs=80.9
Q ss_pred ccCCCccccccccccCCCCCCCchhhhhhhccCCCcccEEEeccccccccCccccCCCccceEEecCCCCcccc--cccc
Q 000692 547 DKFENLRTFLPIFIEGLIPSYISPMVLSDLLPKFKKLRVLSLRRYYITEVPISIGCLRHLRYLNFSDTKIKCLP--ESVT 624 (1349)
Q Consensus 547 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp--~~i~ 624 (1349)
..++.||+|...+.. +..+-+...+.++++|+.||+|+++++.+ ..+++|++|+.|.+.+=.+..-+ ..+.
T Consensus 145 ~~LPsL~sL~i~~~~------~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF 217 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQ------FDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLF 217 (699)
T ss_pred hhCcccceEEecCce------ecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHh
Confidence 457788888654321 22333667788999999999999999988 67999999999999987776433 3578
Q ss_pred cCCCCcEEEecCccCCCcCchhh-------hccccccEEEecCCCc
Q 000692 625 SLLNLEILILRDCLHLLKLPSSI-------GNLVKLLHLDIEGANL 663 (1349)
Q Consensus 625 ~L~~L~~L~l~~~~~~~~lp~~i-------~~L~~L~~L~l~~~~~ 663 (1349)
+|++|++||+|.... ...+..+ ..|++||.||.+++..
T Consensus 218 ~L~~L~vLDIS~~~~-~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 218 NLKKLRVLDISRDKN-NDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred cccCCCeeecccccc-ccchHHHHHHHHhcccCccccEEecCCcch
Confidence 999999999997633 2222211 3488999999998863
No 189
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.00045 Score=71.57 Aligned_cols=203 Identities=14% Similarity=0.150 Sum_probs=120.8
Q ss_pred CCCccceEEEcccCCc--cccccccCccccccceEEeccCCcccccccccCCCCcceEEecCCCC-CccccccCCCCCCc
Q 000692 1126 LPVTLKRLDIQMCSNF--MVLTSECQLPEVLEELKIVSCPKLESIAETFFDNARLRSIQIKDCDN-LRSIPKGLHNLSYL 1202 (1349)
Q Consensus 1126 ~~~~L~~L~l~~~~~l--~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~-l~~lp~~~~~l~~L 1202 (1349)
.++.++.|++.+|..- ..+...+..++.|+.|+|+.|+....+...-.++.+|++|.+.+... .+.....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 4456777777776532 34445566777788888877644332221113456788888766431 12223345667788
Q ss_pred ceEEeecCCCCcccCCC-----CCcCcccEEEeccCcCcccccc----ccccccceeeeccCCCccccCCCC--CccccC
Q 000692 1203 HCISIEHCQNLVSFPED-----LLPGAIIEFSVQNCAKLKGLRV----GMFNSLQDLLLWQCPGIQFFPEEG--LSANVA 1271 (1349)
Q Consensus 1203 ~~L~l~~c~~l~~lp~~-----~~~~~L~~L~l~~c~~l~~l~~----~~~~~L~~L~l~~~~~l~~l~~~~--~~~~L~ 1271 (1349)
++|+++.| ++..+-.+ ...+.+.+++...|+....... ..|+++..+-+..||.-+.-...+ -.+.+-
T Consensus 149 telHmS~N-~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 149 TELHMSDN-SLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhhhccc-hhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence 88888876 44433221 2345778888888875544432 346688888888886433222222 245666
Q ss_pred ceeecCCCCCcccccccccccCccceEEEcCCCCCcccccCcccCcCCcccceeeeccCCCccccC
Q 000692 1272 YLGISGDNIYKPLVKWGFHKFTSLTALCINGCSDAVSFPDEEKGMILPTSLTWIIISDFPKLERLS 1337 (1349)
Q Consensus 1272 ~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~lp~sL~~L~l~~c~~L~~l~ 1337 (1349)
.|++..++.-.-..-..+..+++|..|.+++.|-...+..+.. ..|-+...++++.|+
T Consensus 228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~er--------r~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGER--------RFLLIARLTKVQVLN 285 (418)
T ss_pred hhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcc--------eEEEEeeccceEEec
Confidence 7788775543222222478899999999999887777766431 233355556666554
No 190
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.77 E-value=0.019 Score=57.39 Aligned_cols=135 Identities=16% Similarity=0.120 Sum_probs=75.3
Q ss_pred cchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-------------------cCceEEEEe
Q 000692 173 GRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-------------------FDPKAWVCV 233 (1349)
Q Consensus 173 Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-------------------f~~~~wv~~ 233 (1349)
|.+...+.+...+... .-...+.++|..|+||+++|..+++..--.. .....|+.-
T Consensus 1 gq~~~~~~L~~~~~~~-----~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcC-----CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 5566777777777533 2356789999999999999999877532211 112223322
Q ss_pred cccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHh-----cCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEE
Q 000692 234 SDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEAL-----FKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRII 308 (1349)
Q Consensus 234 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~il 308 (1349)
.... ..-..++.. .+.+.+ .+++=++|+||++.-..+.+.++...+-.-..++.+|
T Consensus 76 ~~~~------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 76 DKKK------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp TTSS------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred cccc------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 2110 011222222 333332 2456689999998777778888887776666788988
Q ss_pred EEecchh-HHHhhcC-CceEeCCCC
Q 000692 309 VTTRSVD-VALTMGS-GGYCELKLL 331 (1349)
Q Consensus 309 vTtR~~~-v~~~~~~-~~~~~l~~L 331 (1349)
++|++.. +...+.. -..+.+.++
T Consensus 137 L~t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 137 LITNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp EEES-GGGS-HHHHTTSEEEEE---
T ss_pred EEECChHHChHHHHhhceEEecCCC
Confidence 8888754 3322222 124555554
No 191
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.75 E-value=0.0087 Score=69.05 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=37.9
Q ss_pred ccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCC
Q 000692 170 AVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKS 221 (1349)
Q Consensus 170 ~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~ 221 (1349)
.++||++.++.+...+..++ .|.|.|.+|+|||++|+.++....
T Consensus 21 ~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHHhc
Confidence 58999999999999987554 588999999999999999987543
No 192
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.68 E-value=0.00021 Score=82.88 Aligned_cols=82 Identities=28% Similarity=0.352 Sum_probs=39.1
Q ss_pred ccCCCcccEEEeccccccccCccccCCCccceEEecCCCCcccccc-cccCCCCcEEEecCccCCCcCchhhhccccccE
Q 000692 577 LPKFKKLRVLSLRRYYITEVPISIGCLRHLRYLNFSDTKIKCLPES-VTSLLNLEILILRDCLHLLKLPSSIGNLVKLLH 655 (1349)
Q Consensus 577 ~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~ 655 (1349)
+.-++.|+.|+|++|++...- .+..|.+|+.|||++|.+..+|.- ..... |+.|++++| -+..+ .+|.+|.+|+.
T Consensus 183 Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN-~l~tL-~gie~LksL~~ 258 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN-ALTTL-RGIENLKSLYG 258 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeeccc-HHHhh-hhHHhhhhhhc
Confidence 334445555555555555443 445555555555555555555431 12222 555555554 23333 23555555555
Q ss_pred EEecCCC
Q 000692 656 LDIEGAN 662 (1349)
Q Consensus 656 L~l~~~~ 662 (1349)
||+++|-
T Consensus 259 LDlsyNl 265 (1096)
T KOG1859|consen 259 LDLSYNL 265 (1096)
T ss_pred cchhHhh
Confidence 5555543
No 193
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.66 E-value=0.021 Score=72.43 Aligned_cols=119 Identities=18% Similarity=0.245 Sum_probs=70.8
Q ss_pred CccccchhhHHHHHHHHhccCCC---CCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPN---DDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKV 245 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~---~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 245 (1349)
..++|.+..++.+...+...... .+....++.++|+.|+|||++|+.++... +...+.++.++..... .
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l----~~~~~~~d~se~~~~~----~ 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL----GVHLERFDMSEYMEKH----T 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh----cCCeEEEeCchhhhcc----c
Confidence 45889999999988888643210 11234578899999999999999998754 2334555554432211 1
Q ss_pred HHHHccCCCC--CcCChHHHHHHHHHHhcCC-ceEEEEeCCCCCChhhHHHhhccCC
Q 000692 246 ILESITLSPC--ELKDLNSVQLKLKEALFKK-KYLIVLDDVWSKSYDLWQALKSPFM 299 (1349)
Q Consensus 246 i~~~l~~~~~--~~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~~~~~~~~~~~~~l~ 299 (1349)
+...++.... ...... .+.+.++.+ .-+++||+++....+.+..+...+-
T Consensus 526 ~~~lig~~~gyvg~~~~~----~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld 578 (731)
T TIGR02639 526 VSRLIGAPPGYVGFEQGG----LLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMD 578 (731)
T ss_pred HHHHhcCCCCCcccchhh----HHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhc
Confidence 1122222221 111112 233333333 4599999998777777777666554
No 194
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.66 E-value=0.003 Score=66.25 Aligned_cols=35 Identities=29% Similarity=0.376 Sum_probs=28.2
Q ss_pred EEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEe
Q 000692 198 LIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCV 233 (1349)
Q Consensus 198 vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~ 233 (1349)
.++|+|..|+||||++..+..... +.|+.+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~-~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLR-HKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhc-ccCCEEEEEec
Confidence 578999999999999999987643 33887877754
No 195
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.65 E-value=0.012 Score=74.25 Aligned_cols=166 Identities=18% Similarity=0.203 Sum_probs=87.5
Q ss_pred CCccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHH
Q 000692 168 EPAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVIL 247 (1349)
Q Consensus 168 ~~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 247 (1349)
+...+|.++.+++|.+++............++.++|++|+||||+|+.++...... | +-+.++...+..++...-.
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~-~---~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRK-Y---VRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCC-E---EEEEcCCCCCHHHhccchh
Confidence 45689999999999988864222122344689999999999999999998754322 2 1233333333322211100
Q ss_pred HHccCCCCCcCChHHHHHHHHHHhcCCceEEEEeCCCCCChhh----HHHhhccCCC---------------CCCCcEEE
Q 000692 248 ESITLSPCELKDLNSVQLKLKEALFKKKYLIVLDDVWSKSYDL----WQALKSPFMV---------------GAPDSRII 308 (1349)
Q Consensus 248 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~----~~~~~~~l~~---------------~~~gs~il 308 (1349)
...+ .......+.+.+. ....-++++|.++.-..+. .+.+...+-+ .-.+.-+|
T Consensus 397 ~~~g------~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i 469 (784)
T PRK10787 397 TYIG------SMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFV 469 (784)
T ss_pred ccCC------CCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEE
Confidence 0011 0111223333322 2234578999995432211 2333332221 11333444
Q ss_pred EEecchhHHHhhcC-CceEeCCCCChhhHHHHHHHHH
Q 000692 309 VTTRSVDVALTMGS-GGYCELKLLSDDDCWSVFVKHA 344 (1349)
Q Consensus 309 vTtR~~~v~~~~~~-~~~~~l~~L~~~~~~~l~~~~~ 344 (1349)
.|+.+..+...+-. ...+++.++++++-.++.+++.
T Consensus 470 ~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 470 ATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 55544332222211 1367888898888887776665
No 196
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.65 E-value=0.032 Score=64.82 Aligned_cols=119 Identities=20% Similarity=0.137 Sum_probs=74.8
Q ss_pred EEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCceE
Q 000692 198 LIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKKKYL 277 (1349)
Q Consensus 198 vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 277 (1349)
++.|.|+-++||||+++.+....... .+++...+...-..-+.+ ....+.+.-..++..
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~----~iy~~~~d~~~~~~~l~d-----------------~~~~~~~~~~~~~~y 97 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE----IIYINFDDLRLDRIELLD-----------------LLRAYIELKEREKSY 97 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc----eEEEEecchhcchhhHHH-----------------HHHHHHHhhccCCce
Confidence 99999999999999997766553322 444443332111111111 111111111227889
Q ss_pred EEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecchhHHH-----hh-cCCceEeCCCCChhhHHHHH
Q 000692 278 IVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRSVDVAL-----TM-GSGGYCELKLLSDDDCWSVF 340 (1349)
Q Consensus 278 lVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~~v~~-----~~-~~~~~~~l~~L~~~~~~~l~ 340 (1349)
|+||.|... ..|......+.+.++. +|++|+-+..... .+ +-...+++-||+-.|...+-
T Consensus 98 ifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 98 IFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred EEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 999999554 7799888888876666 8888887654332 22 22346899999999987654
No 197
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.65 E-value=0.0037 Score=64.07 Aligned_cols=132 Identities=17% Similarity=0.185 Sum_probs=64.0
Q ss_pred cchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-cCceEEEEeccc--cc-----------
Q 000692 173 GRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-FDPKAWVCVSDD--FD----------- 238 (1349)
Q Consensus 173 Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~~~~wv~~~~~--~~----------- 238 (1349)
.+..+....++.+.. ..+|.+.|++|.|||.||.+.+.+.-..+ |+.++++.-.-+ .+
T Consensus 4 p~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 455666677777762 24899999999999999998876543334 887777742211 00
Q ss_pred HHHHHHHHHHHccCCCCCcCChHHHHHH------HHHHhcCC---ceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEE
Q 000692 239 VLRISKVILESITLSPCELKDLNSVQLK------LKEALFKK---KYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIV 309 (1349)
Q Consensus 239 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~------l~~~l~~~---~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv 309 (1349)
...-..-+.+.+..-. .....+.+.+. -..+++|+ ...||+|++.+....++..+.... +.|||||+
T Consensus 76 ~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~ 151 (205)
T PF02562_consen 76 MEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKIII 151 (205)
T ss_dssp --TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEE
T ss_pred HHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEEE
Confidence 0001111111111100 11112222110 01233454 469999999888777787776654 57899999
Q ss_pred EecchhH
Q 000692 310 TTRSVDV 316 (1349)
Q Consensus 310 TtR~~~v 316 (1349)
+--..++
T Consensus 152 ~GD~~Q~ 158 (205)
T PF02562_consen 152 TGDPSQI 158 (205)
T ss_dssp EE-----
T ss_pred ecCceee
Confidence 9875443
No 198
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.62 E-value=0.079 Score=59.11 Aligned_cols=175 Identities=10% Similarity=0.019 Sum_probs=96.6
Q ss_pred hHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-cC------c--eEEEEecccccHHHHHHHHH
Q 000692 177 DKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-FD------P--KAWVCVSDDFDVLRISKVIL 247 (1349)
Q Consensus 177 ~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~------~--~~wv~~~~~~~~~~~~~~i~ 247 (1349)
..+.+...+..+ .-.....++|+.|+||+++|+.++...--.. .. | +-++..+..+|+..+
T Consensus 10 ~~~~l~~~~~~~-----rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i----- 79 (325)
T PRK06871 10 TYQQITQAFQQG-----LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL----- 79 (325)
T ss_pred HHHHHHHHHHcC-----CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE-----
Confidence 345566666432 2346788999999999999999876432110 00 0 001111111111100
Q ss_pred HHccCCCCCcCChHHHHHHHHHHh-----cCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecch-hHHHhhc
Q 000692 248 ESITLSPCELKDLNSVQLKLKEAL-----FKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRSV-DVALTMG 321 (1349)
Q Consensus 248 ~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~-~v~~~~~ 321 (1349)
.......-.+++.. .+.+.+ .+++=++|+|+++.-.......+...+-.-.+++.+|++|.+. .+...+.
T Consensus 80 ---~p~~~~~I~id~iR-~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~ 155 (325)
T PRK06871 80 ---EPIDNKDIGVDQVR-EINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIY 155 (325)
T ss_pred ---ccccCCCCCHHHHH-HHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHH
Confidence 00000111222222 222222 3566688899997766666777777776555667777777654 3332222
Q ss_pred C-CceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHH
Q 000692 322 S-GGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAA 374 (1349)
Q Consensus 322 ~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 374 (1349)
. -..+.+.++++++..+.+..... . . ...+...+..++|.|+.+
T Consensus 156 SRC~~~~~~~~~~~~~~~~L~~~~~---~--~----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 156 SRCQTWLIHPPEEQQALDWLQAQSS---A--E----ISEILTALRINYGRPLLA 200 (325)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHhc---c--C----hHHHHHHHHHcCCCHHHH
Confidence 2 24789999999999988876541 1 1 112345678899999644
No 199
>PRK06526 transposase; Provisional
Probab=96.60 E-value=0.0026 Score=68.53 Aligned_cols=100 Identities=15% Similarity=0.105 Sum_probs=52.2
Q ss_pred EEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCce
Q 000692 197 RLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKKKY 276 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 276 (1349)
.-+.++|++|+|||+||..+......+++. +.|++ ..++...+..... .. .....+.+. .+.-
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~-v~f~t------~~~l~~~l~~~~~-----~~---~~~~~l~~l--~~~d 161 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHR-VLFAT------AAQWVARLAAAHH-----AG---RLQAELVKL--GRYP 161 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCc-hhhhh------HHHHHHHHHHHHh-----cC---cHHHHHHHh--ccCC
Confidence 468999999999999999988764333343 33332 2334444432211 01 111223322 2456
Q ss_pred EEEEeCCCCCChhhHH--HhhccCCC-CCCCcEEEEEecch
Q 000692 277 LIVLDDVWSKSYDLWQ--ALKSPFMV-GAPDSRIIVTTRSV 314 (1349)
Q Consensus 277 LlVlDdv~~~~~~~~~--~~~~~l~~-~~~gs~ilvTtR~~ 314 (1349)
+||+||+.....+.|. .+...+.. ...+ .+|+||...
T Consensus 162 lLIIDD~g~~~~~~~~~~~L~~li~~r~~~~-s~IitSn~~ 201 (254)
T PRK06526 162 LLIVDEVGYIPFEPEAANLFFQLVSSRYERA-SLIVTSNKP 201 (254)
T ss_pred EEEEcccccCCCCHHHHHHHHHHHHHHHhcC-CEEEEcCCC
Confidence 8999999543222222 22222211 1223 388888753
No 200
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.59 E-value=0.083 Score=58.75 Aligned_cols=175 Identities=11% Similarity=0.011 Sum_probs=97.0
Q ss_pred hHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc--cC------ceEEEEecccccHHHHHHHHHH
Q 000692 177 DKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED--FD------PKAWVCVSDDFDVLRISKVILE 248 (1349)
Q Consensus 177 ~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~--f~------~~~wv~~~~~~~~~~~~~~i~~ 248 (1349)
..+++...+... .-...+.++|+.|+||+++|..++...--.. .. .+-++.....+|+..+
T Consensus 11 ~~~~l~~~~~~~-----rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------ 79 (319)
T PRK06090 11 VWQNWKAGLDAG-----RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVI------ 79 (319)
T ss_pred HHHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEE------
Confidence 455666665432 3356889999999999999999866431110 00 0001111111111000
Q ss_pred HccCC-CCCcCChHHHHHHHHHHh-----cCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecch-hHHHhhc
Q 000692 249 SITLS-PCELKDLNSVQLKLKEAL-----FKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRSV-DVALTMG 321 (1349)
Q Consensus 249 ~l~~~-~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~-~v~~~~~ 321 (1349)
... ....-.+++. +.+.+.+ .+++=++|+|++..-.......+...+-.-.+++.+|++|.+. .+...+.
T Consensus 80 --~p~~~~~~I~vdqi-R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~ 156 (319)
T PRK06090 80 --KPEKEGKSITVEQI-RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIV 156 (319)
T ss_pred --ecCcCCCcCCHHHH-HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 000 0011122222 2222222 2445688999997666666777777765545566666666553 4443333
Q ss_pred CC-ceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHH
Q 000692 322 SG-GYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARAL 377 (1349)
Q Consensus 322 ~~-~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 377 (1349)
.- ..+.+.+++++++.+.+.... . + .+..+++.++|.|+.+..+
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~----~---~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 157 SRCQQWVVTPPSTAQAMQWLKGQG----I---T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred hcceeEeCCCCCHHHHHHHHHHcC----C---c-----hHHHHHHHcCCCHHHHHHH
Confidence 22 468999999999998886531 1 0 1245688999999877554
No 201
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.58 E-value=0.061 Score=67.37 Aligned_cols=120 Identities=15% Similarity=0.199 Sum_probs=69.1
Q ss_pred ccccchhhHHHHHHHHhccCC---CCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHH
Q 000692 170 AVYGRDEDKARVLKIVLKIDP---NDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVI 246 (1349)
Q Consensus 170 ~~~Gr~~~~~~l~~~l~~~~~---~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 246 (1349)
.++|.++.++.+...+..... ........+.++|+.|+|||++|+.++.... ...+.+++++..... .+
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~----~~~i~id~se~~~~~----~~ 530 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG----IELLRFDMSEYMERH----TV 530 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC----CCcEEeechhhcccc----cH
Confidence 588999999999988864321 0122345789999999999999999988653 123344444322211 11
Q ss_pred HHHccCCCCCcCChHHHHHHHHHHhcC-CceEEEEeCCCCCChhhHHHhhccCC
Q 000692 247 LESITLSPCELKDLNSVQLKLKEALFK-KKYLIVLDDVWSKSYDLWQALKSPFM 299 (1349)
Q Consensus 247 ~~~l~~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~~~~~~~~~~~~l~ 299 (1349)
.+-++.+..... .+ ....+.+.++. ..-+|+||++.....+.+..+...+-
T Consensus 531 ~~LiG~~~gyvg-~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 531 SRLIGAPPGYVG-FD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred HHHcCCCCCccc-cc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 222232221111 00 01122233333 44699999997777677777665543
No 202
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.54 E-value=0.021 Score=73.23 Aligned_cols=138 Identities=19% Similarity=0.212 Sum_probs=76.5
Q ss_pred CccccchhhHHHHHHHHhccCC---CCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDP---NDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKV 245 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~---~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 245 (1349)
..++|.+..++.+...+..... +.+....++.++|+.|+|||++|+.+++..... ....+.++++.-... . .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~-~~~~i~id~se~~~~-~---~ 642 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS-DDAMVRIDMSEFMEK-H---S 642 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC-CCcEEEEEhHHhhhh-h---h
Confidence 4588999999999888865321 011223578899999999999999998654211 223344554432111 1 1
Q ss_pred HHHHccCCCCCcCChHHHHHHHHHHhcC-CceEEEEeCCCCCChhhHHHhhccCCCC-----------CCCcEEEEEecc
Q 000692 246 ILESITLSPCELKDLNSVQLKLKEALFK-KKYLIVLDDVWSKSYDLWQALKSPFMVG-----------APDSRIIVTTRS 313 (1349)
Q Consensus 246 i~~~l~~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~~~~~~~~~~~~l~~~-----------~~gs~ilvTtR~ 313 (1349)
+.+-++.++... ..++ ...+.+..+. ..-+|+||++.....+.+..+...+..+ ...+-||+||..
T Consensus 643 ~~~LiG~~pgy~-g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~ 720 (857)
T PRK10865 643 VSRLVGAPPGYV-GYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL 720 (857)
T ss_pred HHHHhCCCCccc-ccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCc
Confidence 111223222211 1111 1122333333 3369999999776667777666554322 122337778765
No 203
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.036 Score=65.23 Aligned_cols=105 Identities=22% Similarity=0.267 Sum_probs=67.0
Q ss_pred CCccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHH
Q 000692 168 EPAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVIL 247 (1349)
Q Consensus 168 ~~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 247 (1349)
+..-+|.++.+++|.+++.-..-.+..+.+++..+|++|||||.+|+.++.....+.| -++++.-.|..++-
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf----RfSvGG~tDvAeIk---- 481 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF----RFSVGGMTDVAEIK---- 481 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE----EEeccccccHHhhc----
Confidence 4567899999999999986544334456789999999999999999999987654422 24455554544332
Q ss_pred HHccCCCCCc-CChHHHHHHHHHHhcCCceEEEEeCCC
Q 000692 248 ESITLSPCEL-KDLNSVQLKLKEALFKKKYLIVLDDVW 284 (1349)
Q Consensus 248 ~~l~~~~~~~-~~~~~~~~~l~~~l~~~~~LlVlDdv~ 284 (1349)
+....-. .-...+++.+++. +...-|+.+|.|+
T Consensus 482 ---GHRRTYVGAMPGkiIq~LK~v-~t~NPliLiDEvD 515 (906)
T KOG2004|consen 482 ---GHRRTYVGAMPGKIIQCLKKV-KTENPLILIDEVD 515 (906)
T ss_pred ---ccceeeeccCChHHHHHHHhh-CCCCceEEeehhh
Confidence 1111100 1112334444433 4556788999984
No 204
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.53 E-value=0.065 Score=55.02 Aligned_cols=177 Identities=19% Similarity=0.188 Sum_probs=96.5
Q ss_pred CccccchhhHHH---HHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHH
Q 000692 169 PAVYGRDEDKAR---VLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKV 245 (1349)
Q Consensus 169 ~~~~Gr~~~~~~---l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 245 (1349)
..++|.++...+ |+++|..++.=++-.++-|..+|++|.|||.+|+++++...+- | +-|.+ .+ -
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp-~---l~vka------t~---l 187 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP-L---LLVKA------TE---L 187 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc-e---EEech------HH---H
Confidence 358898876543 5566655443244568899999999999999999999986543 2 22211 11 1
Q ss_pred HHHHccCCCCCcCChHHHHHHHHH-HhcCCceEEEEeCCCCCCh------------hhHHHhhccCCC--CCCCcEEEEE
Q 000692 246 ILESITLSPCELKDLNSVQLKLKE-ALFKKKYLIVLDDVWSKSY------------DLWQALKSPFMV--GAPDSRIIVT 310 (1349)
Q Consensus 246 i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~------------~~~~~~~~~l~~--~~~gs~ilvT 310 (1349)
|.+..+ +-...+..+.+ .-+.-++.+.+|..+-... +...++...+.. .+.|...|-.
T Consensus 188 iGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaa 260 (368)
T COG1223 188 IGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAA 260 (368)
T ss_pred HHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEee
Confidence 222222 11222223322 2234689999998743210 111222222221 2345555666
Q ss_pred ecchhHHHhh-cC--CceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCC
Q 000692 311 TRSVDVALTM-GS--GGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGL 370 (1349)
Q Consensus 311 tR~~~v~~~~-~~--~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 370 (1349)
|.+..+.+.. .. ...++...-+++|-.+++...+..-.-+. ... .+.++++.+|+
T Consensus 261 TN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv-~~~----~~~~~~~t~g~ 318 (368)
T COG1223 261 TNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV-DAD----LRYLAAKTKGM 318 (368)
T ss_pred cCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc-ccC----HHHHHHHhCCC
Confidence 6655544322 11 23577777788999999988873222111 111 24456666664
No 205
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.49 E-value=0.021 Score=63.89 Aligned_cols=89 Identities=13% Similarity=0.151 Sum_probs=51.5
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEeccccc--HHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhc
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFD--VLRISKVILESITLSPCELKDLNSVQLKLKEALF 272 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 272 (1349)
..++|+++|.+|+||||++..++.....+++ .+..+++. .+. ..+-++..++.++.+-....+..++.+.+...-.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~Gk-kVglI~aD-t~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKK-TVGFITTD-HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCC-cEEEEecC-CcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 4589999999999999999999875432222 34445443 332 2223334444444433333455555555544322
Q ss_pred C-CceEEEEeCCCC
Q 000692 273 K-KKYLIVLDDVWS 285 (1349)
Q Consensus 273 ~-~~~LlVlDdv~~ 285 (1349)
. +.=+|++|-.-.
T Consensus 318 ~~~~DvVLIDTaGR 331 (436)
T PRK11889 318 EARVDYILIDTAGK 331 (436)
T ss_pred ccCCCEEEEeCccc
Confidence 1 345778888744
No 206
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.45 E-value=0.0032 Score=69.93 Aligned_cols=52 Identities=15% Similarity=0.240 Sum_probs=43.1
Q ss_pred ccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCC
Q 000692 170 AVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKS 221 (1349)
Q Consensus 170 ~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~ 221 (1349)
.++|.++.++++++++...........+++.++|++|+||||||..+++...
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 6999999999999999765432234568999999999999999999987653
No 207
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.45 E-value=0.012 Score=75.14 Aligned_cols=137 Identities=15% Similarity=0.159 Sum_probs=77.8
Q ss_pred CccccchhhHHHHHHHHhccCC---CCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDP---NDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKV 245 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~---~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 245 (1349)
..++|.+..++.+.+.+..... .......++.++|+.|+|||.+|++++...... ....+-+++++..+. ..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~-~~~~~~~dmse~~~~----~~ 640 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG-EQNLITINMSEFQEA----HT 640 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC-CcceEEEeHHHhhhh----hh
Confidence 4689999999999998865322 112334578999999999999999987653211 222223333322111 11
Q ss_pred HHHHccCCCCC--cCChHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHHhhccCCCCC-----------CCcEEEEEec
Q 000692 246 ILESITLSPCE--LKDLNSVQLKLKEALFKKKYLIVLDDVWSKSYDLWQALKSPFMVGA-----------PDSRIIVTTR 312 (1349)
Q Consensus 246 i~~~l~~~~~~--~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~-----------~gs~ilvTtR 312 (1349)
+.+-++.++.. ......+...++ +...-+|+||++...+.+.++.+...+..+. ..+-||+||.
T Consensus 641 ~~~l~g~~~gyvg~~~~g~L~~~v~---~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSN 717 (852)
T TIGR03345 641 VSRLKGSPPGYVGYGEGGVLTEAVR---RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSN 717 (852)
T ss_pred hccccCCCCCcccccccchHHHHHH---hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCC
Confidence 11122322221 111122223332 2456799999997777777777665554332 4556677765
Q ss_pred c
Q 000692 313 S 313 (1349)
Q Consensus 313 ~ 313 (1349)
-
T Consensus 718 l 718 (852)
T TIGR03345 718 A 718 (852)
T ss_pred C
Confidence 3
No 208
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.45 E-value=0.016 Score=74.75 Aligned_cols=136 Identities=21% Similarity=0.247 Sum_probs=78.9
Q ss_pred CccccchhhHHHHHHHHhccCCC---CCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPN---DDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKV 245 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~---~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 245 (1349)
..++|.+..++.+...+...... ......++.++|+.|+|||++|+.++...... -...+.++++.......
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~-~~~~i~~d~s~~~~~~~---- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD-EDAMVRIDMSEYMEKHS---- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC-CCcEEEEechhhcccch----
Confidence 46899999999999998754320 11234678899999999999999998754211 22334445443322111
Q ss_pred HHHHccCCCC--CcCChHHHHHHHHHHhcCC-ceEEEEeCCCCCChhhHHHhhccCCCC-----------CCCcEEEEEe
Q 000692 246 ILESITLSPC--ELKDLNSVQLKLKEALFKK-KYLIVLDDVWSKSYDLWQALKSPFMVG-----------APDSRIIVTT 311 (1349)
Q Consensus 246 i~~~l~~~~~--~~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~~~~~~~~~~~~~l~~~-----------~~gs~ilvTt 311 (1349)
...-++.++. ...+... +.+.++.+ ..+|+||++.....+.+..+...+-.+ ...+-||+||
T Consensus 640 ~~~l~g~~~g~~g~~~~g~----l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TS 715 (852)
T TIGR03346 640 VARLIGAPPGYVGYEEGGQ----LTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTS 715 (852)
T ss_pred HHHhcCCCCCccCcccccH----HHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeC
Confidence 1111222221 1111122 23333333 348999999887777787777665432 1334477777
Q ss_pred cc
Q 000692 312 RS 313 (1349)
Q Consensus 312 R~ 313 (1349)
.-
T Consensus 716 n~ 717 (852)
T TIGR03346 716 NL 717 (852)
T ss_pred Cc
Confidence 63
No 209
>PRK04296 thymidine kinase; Provisional
Probab=96.42 E-value=0.005 Score=63.64 Aligned_cols=113 Identities=14% Similarity=-0.002 Sum_probs=63.3
Q ss_pred EEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCC--cCChHHHHHHHHHHhcCC
Q 000692 197 RLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCE--LKDLNSVQLKLKEALFKK 274 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~~ 274 (1349)
.++.|+|..|.||||+|..++.+...++. .++.+. ..++.......++.+++..... ....++....+.+ ..++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~-~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~ 78 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGM-KVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGEK 78 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCC-eEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCCC
Confidence 57889999999999999998876533322 233331 1112122233455555432221 2334445555544 3335
Q ss_pred ceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecchh
Q 000692 275 KYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRSVD 315 (1349)
Q Consensus 275 ~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~~ 315 (1349)
.-+||+|.+.--+.++..++...+. ..|..|++|.++.+
T Consensus 79 ~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 79 IDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 5699999994432232333333322 46788999999744
No 210
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.41 E-value=0.011 Score=65.70 Aligned_cols=122 Identities=15% Similarity=0.239 Sum_probs=70.6
Q ss_pred cchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccC
Q 000692 173 GRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITL 252 (1349)
Q Consensus 173 Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 252 (1349)
+|........+++..... +...+-+.++|..|+|||.||.++++....+++. +.++++. +++..+......
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~-v~~~~~~------~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVS-STLLHFP------EFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCC-EEEEEHH------HHHHHHHHHHhc
Confidence 455555555666643221 1234678999999999999999999886533343 5566543 444444444321
Q ss_pred CCCCcCChHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHH--hhccCCC-C-CCCcEEEEEecc
Q 000692 253 SPCELKDLNSVQLKLKEALFKKKYLIVLDDVWSKSYDLWQA--LKSPFMV-G-APDSRIIVTTRS 313 (1349)
Q Consensus 253 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~--~~~~l~~-~-~~gs~ilvTtR~ 313 (1349)
.+..+ .+.. + .+-=||||||+.-+....|.. +...+.. . ..+-.+|+||--
T Consensus 206 -----~~~~~---~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 206 -----GSVKE---KIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred -----CcHHH---HHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 11222 2222 2 355689999997665566753 4333321 1 245568888873
No 211
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.027 Score=66.72 Aligned_cols=165 Identities=18% Similarity=0.210 Sum_probs=93.4
Q ss_pred CCccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHH
Q 000692 168 EPAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVIL 247 (1349)
Q Consensus 168 ~~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 247 (1349)
+..-+|-++..++|+++|.-..-...-...++.++|++|+|||+|++.++.....+ | +-++++.-.|..++-
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk-f---vR~sLGGvrDEAEIR---- 393 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK-F---VRISLGGVRDEAEIR---- 393 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC-E---EEEecCccccHHHhc----
Confidence 45688999999999999865332233455799999999999999999999875433 3 223444444433331
Q ss_pred HHccCCCCCcCC-hHHHHHHHHHHhcCCceEEEEeCCCCCCh----hhHHHhhccCCCCC-------------CCcEEE-
Q 000692 248 ESITLSPCELKD-LNSVQLKLKEALFKKKYLIVLDDVWSKSY----DLWQALKSPFMVGA-------------PDSRII- 308 (1349)
Q Consensus 248 ~~l~~~~~~~~~-~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----~~~~~~~~~l~~~~-------------~gs~il- 308 (1349)
+....-... .....+.+++. +.+.=+++||.++.-.. +.-.++...+-+.. .=|.|+
T Consensus 394 ---GHRRTYIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 394 ---GHRRTYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred ---cccccccccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEE
Confidence 111111111 12233333332 45778999999843210 11222333222111 123443
Q ss_pred EEecc-hh-HHH-hhcCCceEeCCCCChhhHHHHHHHHH
Q 000692 309 VTTRS-VD-VAL-TMGSGGYCELKLLSDDDCWSVFVKHA 344 (1349)
Q Consensus 309 vTtR~-~~-v~~-~~~~~~~~~l~~L~~~~~~~l~~~~~ 344 (1349)
|||-+ -+ +.. .+.-...+++.+-+++|=.++-+++.
T Consensus 470 iaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 470 IATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 44433 22 111 12223579999999999888887765
No 212
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.40 E-value=0.056 Score=55.12 Aligned_cols=120 Identities=22% Similarity=0.347 Sum_probs=70.6
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILE 248 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 248 (1349)
..++|.+...+.+++--..-- .+..-.-|.+||.-|+|||+|++++.+....++-. -|-|...
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr---LVEV~k~------------ 122 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFA--EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR---LVEVDKE------------ 122 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHH--cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe---EEEEcHH------------
Confidence 468999888888776443211 11223467899999999999999998876544222 2222221
Q ss_pred HccCCCCCcCChHHHHHHHHHHhcCCceEEEEeCCC-CCChhhHHHhhccCCC---CCCCcEEEEEecch
Q 000692 249 SITLSPCELKDLNSVQLKLKEALFKKKYLIVLDDVW-SKSYDLWQALKSPFMV---GAPDSRIIVTTRSV 314 (1349)
Q Consensus 249 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~~~~~~l~~---~~~gs~ilvTtR~~ 314 (1349)
+..++..+...++. ..+||.|..||.- +++.+.+..+...+-. +.+...++..|.++
T Consensus 123 -------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 123 -------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred -------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 11122222222221 3679999999982 3334566677666643 33445555555543
No 213
>PRK09183 transposase/IS protein; Provisional
Probab=96.40 E-value=0.0045 Score=67.27 Aligned_cols=100 Identities=14% Similarity=0.152 Sum_probs=51.2
Q ss_pred EEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCce
Q 000692 197 RLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKKKY 276 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 276 (1349)
..+.|+|..|+|||+||..++......++ .+.+++ ..++...+...... .. ....+++. ..+.-
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~-~v~~~~------~~~l~~~l~~a~~~-----~~---~~~~~~~~-~~~~d 166 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGI-KVRFTT------AADLLLQLSTAQRQ-----GR---YKTTLQRG-VMAPR 166 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCC-eEEEEe------HHHHHHHHHHHHHC-----Cc---HHHHHHHH-hcCCC
Confidence 46889999999999999999765332223 233443 22233232221110 01 11222222 24556
Q ss_pred EEEEeCCCCCChhhHH--HhhccCCC-CCCCcEEEEEecc
Q 000692 277 LIVLDDVWSKSYDLWQ--ALKSPFMV-GAPDSRIIVTTRS 313 (1349)
Q Consensus 277 LlVlDdv~~~~~~~~~--~~~~~l~~-~~~gs~ilvTtR~ 313 (1349)
++|+||+.-.....+. .+...+.. ...++ +||||..
T Consensus 167 lLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 167 LLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred EEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 9999999653333332 23222211 12344 8888874
No 214
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.39 E-value=0.14 Score=60.60 Aligned_cols=200 Identities=16% Similarity=0.150 Sum_probs=116.6
Q ss_pred ccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCC-------CcccCceEEEEecccccHHHH
Q 000692 170 AVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKS-------VEDFDPKAWVCVSDDFDVLRI 242 (1349)
Q Consensus 170 ~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~-------~~~f~~~~wv~~~~~~~~~~~ 242 (1349)
.+-+|+.+..+|-+++...-. .+...+.+.|.|.+|.|||..+..|..... ...|+ .+.|+.-.-..+.++
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~-~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFIS-DQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREI 474 (767)
T ss_pred cccchhHHHHHHHHHHHhhcC-CCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHH
Confidence 356899999999888865433 223456999999999999999999987432 22254 346666666678999
Q ss_pred HHHHHHHccCCCCCcCChHHHHHHHHHHhc-----CCceEEEEeCCC---CCChhhHHHhhccCC-CCCCCcEEEEEecc
Q 000692 243 SKVILESITLSPCELKDLNSVQLKLKEALF-----KKKYLIVLDDVW---SKSYDLWQALKSPFM-VGAPDSRIIVTTRS 313 (1349)
Q Consensus 243 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~---~~~~~~~~~~~~~l~-~~~~gs~ilvTtR~ 313 (1349)
...|..++..... ........+..+.. .+..++++|+++ ...++ -+...|- +..+++|++|.+=.
T Consensus 475 Y~~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Qd---VlYn~fdWpt~~~sKLvvi~Ia 548 (767)
T KOG1514|consen 475 YEKIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQD---VLYNIFDWPTLKNSKLVVIAIA 548 (767)
T ss_pred HHHHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHH---HHHHHhcCCcCCCCceEEEEec
Confidence 9999999986533 22333334444432 456888888872 22222 2222222 34577887665421
Q ss_pred --hh---------HHHhhcCCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHH
Q 000692 314 --VD---------VALTMGSGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARALGG 379 (1349)
Q Consensus 314 --~~---------v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~ 379 (1349)
.+ +...++ ...+...+.++++--++...+..+. +.-.....+-++++|+.--|-.-.|+.+.-+
T Consensus 549 NTmdlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~R 623 (767)
T KOG1514|consen 549 NTMDLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRR 623 (767)
T ss_pred ccccCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHH
Confidence 11 111111 1346667777777666665555332 1112233444555555555555555544433
No 215
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.39 E-value=0.00038 Score=85.39 Aligned_cols=231 Identities=16% Similarity=0.193 Sum_probs=131.8
Q ss_pred ccccceeeccCCCCCcc--cccccCCCCccceEEEccc-CCccccc----cccCccccccceEEeccCCccccc--cccc
Q 000692 1103 YLDLESLCVFNCPSLTC--LSSRYQLPVTLKRLDIQMC-SNFMVLT----SECQLPEVLEELKIVSCPKLESIA--ETFF 1173 (1349)
Q Consensus 1103 ~~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~l~~~-~~l~~~~----~~~~~~~~L~~L~L~~~~~l~~~~--~~~~ 1173 (1349)
.+.|+.|.+.+|..+.. +-.....++.|+.|++++| ......+ .....+.+|+.|++++|..++... ....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56788999998888775 3335567789999999873 3222211 233455788999999987654332 1122
Q ss_pred CCCCcceEEecCCCCCccc--cccCCCCCCcceEEeecCCCCccc--CC-CCCcCcccEEEec---cCcCcccccccc--
Q 000692 1174 DNARLRSIQIKDCDNLRSI--PKGLHNLSYLHCISIEHCQNLVSF--PE-DLLPGAIIEFSVQ---NCAKLKGLRVGM-- 1243 (1349)
Q Consensus 1174 ~l~~L~~L~l~~~~~l~~l--p~~~~~l~~L~~L~l~~c~~l~~l--p~-~~~~~~L~~L~l~---~c~~l~~l~~~~-- 1243 (1349)
.+++|+.|.+.+|..++.- -.....+++|++|+|++|..++.- .. ....++++.|.+. +|+.++.+....
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~ 346 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL 346 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh
Confidence 3689999998888765432 233566888999999999876331 11 1123444444433 334455553321
Q ss_pred --c-cccceeeeccCCCccccCCCCCc-cccC-ceeecCCCCCc-ccccccccccCccceEEEcCCCCCcccccCcccCc
Q 000692 1244 --F-NSLQDLLLWQCPGIQFFPEEGLS-ANVA-YLGISGDNIYK-PLVKWGFHKFTSLTALCINGCSDAVSFPDEEKGMI 1317 (1349)
Q Consensus 1244 --~-~~L~~L~l~~~~~l~~l~~~~~~-~~L~-~L~l~~~~~l~-~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 1317 (1349)
. ..+..+.+.+|+.++.+...... .... .+.+.+|+.++ .+.. -.....+++.|+++.|..++.-.-.....
T Consensus 347 ~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~-~~~~~~~l~~L~l~~~~~~t~~~l~~~~~- 424 (482)
T KOG1947|consen 347 TLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLEL-RLCRSDSLRVLNLSDCRLVTDKGLRCLAD- 424 (482)
T ss_pred ccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHH-HhccCCccceEecccCccccccchHHHhh-
Confidence 1 14666667777776655443222 2222 46677777773 2211 12233448899998887654332211000
Q ss_pred CCcccceeeeccCCCccc
Q 000692 1318 LPTSLTWIIISDFPKLER 1335 (1349)
Q Consensus 1318 lp~sL~~L~l~~c~~L~~ 1335 (1349)
.-..+..+++.+|+....
T Consensus 425 ~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 425 SCSNLKDLDLSGCRVITL 442 (482)
T ss_pred hhhccccCCccCcccccc
Confidence 013355566666655443
No 216
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.37 E-value=0.00027 Score=86.78 Aligned_cols=35 Identities=26% Similarity=0.225 Sum_probs=15.1
Q ss_pred cceeeeccCCCccccCCCCC---ccccCceeecCCCCC
Q 000692 1247 LQDLLLWQCPGIQFFPEEGL---SANVAYLGISGDNIY 1281 (1349)
Q Consensus 1247 L~~L~l~~~~~l~~l~~~~~---~~~L~~L~l~~~~~l 1281 (1349)
++.|++..|...+.-..... ..++..+++.+|..+
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 55555555544332111100 234455555555544
No 217
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.36 E-value=0.033 Score=59.63 Aligned_cols=171 Identities=20% Similarity=0.170 Sum_probs=95.9
Q ss_pred ccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccC-ceEEEEecccc-----cHHHHH
Q 000692 170 AVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFD-PKAWVCVSDDF-----DVLRIS 243 (1349)
Q Consensus 170 ~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~-~~~wv~~~~~~-----~~~~~~ 243 (1349)
.++|-.++..++-.++....- .+...-|.|+|+.|.|||+|...+..+ .+.|. ..+-|...... .+..+.
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~--~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSD--IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhh--HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 478888888888877754221 122356789999999999999888777 22233 22333333322 234444
Q ss_pred HHHHHHccCCCCCcCChHHHHHHHHHHhcC------CceEEEEeCCCCCChhhHHH----hhc-cCCCCCCCcEEEEEec
Q 000692 244 KVILESITLSPCELKDLNSVQLKLKEALFK------KKYLIVLDDVWSKSYDLWQA----LKS-PFMVGAPDSRIIVTTR 312 (1349)
Q Consensus 244 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~------~~~LlVlDdv~~~~~~~~~~----~~~-~l~~~~~gs~ilvTtR 312 (1349)
+++..++........+..+...++.+.|+. -++.+|+|..+--....-.. +.+ .-....|-+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 444444443333334455555555555532 36888888873321110011 111 1112346677789999
Q ss_pred c-------hhHHHhhcCCceEeCCCCChhhHHHHHHHHH
Q 000692 313 S-------VDVALTMGSGGYCELKLLSDDDCWSVFVKHA 344 (1349)
Q Consensus 313 ~-------~~v~~~~~~~~~~~l~~L~~~~~~~l~~~~~ 344 (1349)
- +.|-.++....++-++.++-++...++++..
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 5 2333333333356677788888888887765
No 218
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.36 E-value=0.005 Score=60.76 Aligned_cols=98 Identities=20% Similarity=0.285 Sum_probs=68.5
Q ss_pred CcccEEEeccccccccCccccCCCccceEEecCCCCcccccccc-cCCCCcEEEecCccCCCcCch--hhhccccccEEE
Q 000692 581 KKLRVLSLRRYYITEVPISIGCLRHLRYLNFSDTKIKCLPESVT-SLLNLEILILRDCLHLLKLPS--SIGNLVKLLHLD 657 (1349)
Q Consensus 581 ~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~-~L~~L~~L~l~~~~~~~~lp~--~i~~L~~L~~L~ 657 (1349)
.....+||++|.+..++ .|..+..|.+|.|.+|+|+.+-+.+. -+.+|+.|.+.+| ++..+-. .+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceee
Confidence 35567888888887765 46788889999999999988866664 4667899999887 5554432 266778888888
Q ss_pred ecCCCccccCcc----ccccCcCCCCCC
Q 000692 658 IEGANLLSELPL----RMKELKCLQTLT 681 (1349)
Q Consensus 658 l~~~~~~~~~p~----~i~~L~~L~~L~ 681 (1349)
+-+|. ...-+. -+.++++|++|+
T Consensus 120 ll~Np-v~~k~~YR~yvl~klp~l~~LD 146 (233)
T KOG1644|consen 120 LLGNP-VEHKKNYRLYVLYKLPSLRTLD 146 (233)
T ss_pred ecCCc-hhcccCceeEEEEecCcceEee
Confidence 88876 332221 145566666664
No 219
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.097 Score=59.40 Aligned_cols=150 Identities=21% Similarity=0.177 Sum_probs=85.4
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhc
Q 000692 193 DSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALF 272 (1349)
Q Consensus 193 ~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 272 (1349)
......+.+.|++|+|||+||.+++... .|..+--++..+-- +.. +..........+....+
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~S---~FPFvKiiSpe~mi-------------G~s--EsaKc~~i~k~F~DAYk 596 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIALSS---DFPFVKIISPEDMI-------------GLS--ESAKCAHIKKIFEDAYK 596 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHhhc---CCCeEEEeChHHcc-------------Ccc--HHHHHHHHHHHHHHhhc
Confidence 3567788899999999999999998753 25433322211100 100 00111122223344456
Q ss_pred CCceEEEEeCCCCCChhhHH------------H---hhccCCCCCCCcEEEEEecchhHHHhhcCC----ceEeCCCCCh
Q 000692 273 KKKYLIVLDDVWSKSYDLWQ------------A---LKSPFMVGAPDSRIIVTTRSVDVALTMGSG----GYCELKLLSD 333 (1349)
Q Consensus 273 ~~~~LlVlDdv~~~~~~~~~------------~---~~~~l~~~~~gs~ilvTtR~~~v~~~~~~~----~~~~l~~L~~ 333 (1349)
..=-.||+||+.. .-+|- . +....|+.++.--|+-||....+...|+-. ..|.++.++.
T Consensus 597 S~lsiivvDdiEr--LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 597 SPLSIIVVDDIER--LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred CcceEEEEcchhh--hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 6778999999943 22332 2 223334433444455677778888877643 3688999888
Q ss_pred -hhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHh
Q 000692 334 -DDCWSVFVKHAFESRDAGTHENLESIRQKVVEKC 367 (1349)
Q Consensus 334 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 367 (1349)
++..+.++..- .-.+.+.+.++++...+|
T Consensus 675 ~~~~~~vl~~~n-----~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 675 GEQLLEVLEELN-----IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred hHHHHHHHHHcc-----CCCcchhHHHHHHHhccc
Confidence 77777776543 111233455556666555
No 220
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.084 Score=61.07 Aligned_cols=193 Identities=15% Similarity=0.150 Sum_probs=101.3
Q ss_pred CccccchhhHHHHHHHHhccCCC------CCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPN------DDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRI 242 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~------~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 242 (1349)
..+=|.++.+.++.+++..-..+ +-..++-|.+||++|.|||.||++++....+- | +.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP-f-----~~isAp------ 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP-F-----LSISAP------ 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc-e-----Eeecch------
Confidence 35778898888888877642211 22346788999999999999999999986654 2 222222
Q ss_pred HHHHHHHccCCCCCcCChHHHHHH-HHHHhcCCceEEEEeCCCCCCh-hhH----------HHhhccC---C-CCCCCcE
Q 000692 243 SKVILESITLSPCELKDLNSVQLK-LKEALFKKKYLIVLDDVWSKSY-DLW----------QALKSPF---M-VGAPDSR 306 (1349)
Q Consensus 243 ~~~i~~~l~~~~~~~~~~~~~~~~-l~~~l~~~~~LlVlDdv~~~~~-~~~----------~~~~~~l---~-~~~~gs~ 306 (1349)
+|+..+. .+.++.+++ +.+.-..-++++++|+++-... .+| .++...+ . ....|-.
T Consensus 258 --eivSGvS------GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~ 329 (802)
T KOG0733|consen 258 --EIVSGVS------GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDP 329 (802)
T ss_pred --hhhcccC------cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCC
Confidence 2222222 122333333 3444567899999999854211 111 1122111 1 1112333
Q ss_pred EEE---EecchhHHHhh---c-CCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHH
Q 000692 307 IIV---TTRSVDVALTM---G-SGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARALGG 379 (1349)
Q Consensus 307 ilv---TtR~~~v~~~~---~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~ 379 (1349)
||| |+|...+...+ + -.+.|.+.--++.+-.+++...+.+-.... .-++..+|+.---..|----|+...|+
T Consensus 330 VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA~lTPGfVGADL~AL~~~Aa 408 (802)
T KOG0733|consen 330 VLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLAKLTPGFVGADLMALCREAA 408 (802)
T ss_pred eEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHHhcCCCccchhHHHHHHHHH
Confidence 333 44543332222 1 224677777777777777777664333322 233444432222222333455555555
Q ss_pred hhc
Q 000692 380 LLR 382 (1349)
Q Consensus 380 ~l~ 382 (1349)
..+
T Consensus 409 ~vA 411 (802)
T KOG0733|consen 409 FVA 411 (802)
T ss_pred HHH
Confidence 543
No 221
>PRK04132 replication factor C small subunit; Provisional
Probab=96.31 E-value=0.084 Score=66.15 Aligned_cols=156 Identities=17% Similarity=0.038 Sum_probs=95.4
Q ss_pred cCCChHHHHHHHHHcCCCCccc-CceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCceEEEEeC
Q 000692 204 MGGIGKTTLAREVYNDKSVEDF-DPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKKKYLIVLDD 282 (1349)
Q Consensus 204 ~gGiGKTtLa~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd 282 (1349)
+.++||||+|..++++.-..++ ..++-+++++......+ ++++..+..... .-..+.-++|+|+
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~I-R~iIk~~a~~~~--------------~~~~~~KVvIIDE 638 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNASDERGINVI-REKVKEFARTKP--------------IGGASFKIIFLDE 638 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHH-HHHHHHHHhcCC--------------cCCCCCEEEEEEC
Confidence 6689999999999987532222 24566777765444433 333333211000 0012457999999
Q ss_pred CCCCChhhHHHhhccCCCCCCCcEEEEEecch-hHHHhhcC-CceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHH
Q 000692 283 VWSKSYDLWQALKSPFMVGAPDSRIIVTTRSV-DVALTMGS-GGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIR 360 (1349)
Q Consensus 283 v~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~-~v~~~~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 360 (1349)
++.-..+....+...+-.-...+++|+++.+. .+...+.. -..+++.+++.++-.+.+.+.+...+...+ .+..
T Consensus 639 aD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~----~e~L 714 (846)
T PRK04132 639 ADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT----EEGL 714 (846)
T ss_pred cccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC----HHHH
Confidence 98776667777776665434566676666543 33323222 247899999999999888876643221111 3455
Q ss_pred HHHHHHhCCChHHHHHHH
Q 000692 361 QKVVEKCKGLPLAARALG 378 (1349)
Q Consensus 361 ~~i~~~~~g~PLal~~~~ 378 (1349)
..|++.++|.+-.+..+-
T Consensus 715 ~~Ia~~s~GDlR~AIn~L 732 (846)
T PRK04132 715 QAILYIAEGDMRRAINIL 732 (846)
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 778999999885554433
No 222
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.30 E-value=0.12 Score=58.47 Aligned_cols=176 Identities=13% Similarity=0.065 Sum_probs=96.4
Q ss_pred hHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-cC--------ceEEEEecccccHHHHHHHHH
Q 000692 177 DKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-FD--------PKAWVCVSDDFDVLRISKVIL 247 (1349)
Q Consensus 177 ~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~--------~~~wv~~~~~~~~~~~~~~i~ 247 (1349)
..+++...+..+ .-...+.++|+.|+||+++|..++...--.. .+ .+.++.....+|+..+
T Consensus 10 ~~~~l~~~~~~~-----rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i----- 79 (334)
T PRK07993 10 DYEQLVGSYQAG-----RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL----- 79 (334)
T ss_pred HHHHHHHHHHcC-----CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE-----
Confidence 456666666532 3356888999999999999999766431110 00 0011111112221110
Q ss_pred HHccCCCC-CcCChHHHHHHHHHHh-----cCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecch-hHHHhh
Q 000692 248 ESITLSPC-ELKDLNSVQLKLKEAL-----FKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRSV-DVALTM 320 (1349)
Q Consensus 248 ~~l~~~~~-~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~-~v~~~~ 320 (1349)
..... ..-.+++.. .+.+.+ .+++=++|+|+++.-....-..+...+-.-..++.+|++|.+. .+...+
T Consensus 80 ---~p~~~~~~I~idqiR-~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI 155 (334)
T PRK07993 80 ---TPEKGKSSLGVDAVR-EVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATL 155 (334)
T ss_pred ---ecccccccCCHHHHH-HHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHH
Confidence 00000 011222222 222222 3566789999996655556666666665444566666666653 344332
Q ss_pred cC-CceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHH
Q 000692 321 GS-GGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAAR 375 (1349)
Q Consensus 321 ~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 375 (1349)
.. -..+.+.+++++++.+.+.... . . + .+.+..++..++|.|..+.
T Consensus 156 rSRCq~~~~~~~~~~~~~~~L~~~~---~--~-~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 156 RSRCRLHYLAPPPEQYALTWLSREV---T--M-S---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred HhccccccCCCCCHHHHHHHHHHcc---C--C-C---HHHHHHHHHHcCCCHHHHH
Confidence 22 2368899999999988886432 1 1 1 2224567899999996543
No 223
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.25 E-value=0.00019 Score=83.10 Aligned_cols=99 Identities=25% Similarity=0.251 Sum_probs=81.5
Q ss_pred CCcccEEEeccccccccCccccCCCccceEEecCCCCcccccccccCCCCcEEEecCccCCCcCchh-hhccccccEEEe
Q 000692 580 FKKLRVLSLRRYYITEVPISIGCLRHLRYLNFSDTKIKCLPESVTSLLNLEILILRDCLHLLKLPSS-IGNLVKLLHLDI 658 (1349)
Q Consensus 580 l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l 658 (1349)
...|.+-+.++|.+..+-.++.-+.+|+.|||++|+++..- .+..|.+|++|||++| .+..+|.- ...+ +|+.|.+
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~l 239 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLNL 239 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhh-hheeeee
Confidence 35677888899999988888999999999999999998775 7889999999999998 77888753 3333 4999999
Q ss_pred cCCCccccCccccccCcCCCCCCee
Q 000692 659 EGANLLSELPLRMKELKCLQTLTNF 683 (1349)
Q Consensus 659 ~~~~~~~~~p~~i~~L~~L~~L~~~ 683 (1349)
++|. +..+ .+|.+|.+|+.|+.-
T Consensus 240 rnN~-l~tL-~gie~LksL~~LDls 262 (1096)
T KOG1859|consen 240 RNNA-LTTL-RGIENLKSLYGLDLS 262 (1096)
T ss_pred cccH-HHhh-hhHHhhhhhhccchh
Confidence 9997 5554 578889999988653
No 224
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.24 E-value=0.15 Score=58.59 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCc
Q 000692 175 DEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVE 223 (1349)
Q Consensus 175 ~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~ 223 (1349)
+.-.+.+.+.+.... .....+|+|.|.=|+|||++.+.+.+.....
T Consensus 2 ~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 344566777776432 1467899999999999999999987766544
No 225
>PRK06921 hypothetical protein; Provisional
Probab=96.21 E-value=0.016 Score=63.28 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=28.5
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEe
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCV 233 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~ 233 (1349)
...+.++|..|+|||+||.++++....+....+++++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 45789999999999999999998764331234566664
No 226
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.21 E-value=0.097 Score=52.85 Aligned_cols=64 Identities=19% Similarity=0.173 Sum_probs=43.7
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-cCceEEEEeccccc
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-FDPKAWVCVSDDFD 238 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~~~~wv~~~~~~~ 238 (1349)
..+||-++.++++.-...+ +...-+.|.||+|+||||-+..+++..-... -+.+.=.++|+...
T Consensus 27 ~dIVGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRG 91 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERG 91 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccc
Confidence 4689999988888776643 3456788999999999998888877653222 23444444444433
No 227
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.06 Score=63.20 Aligned_cols=169 Identities=15% Similarity=0.117 Sum_probs=84.9
Q ss_pred ccccchhhHHHHHHHHhccCC-------CCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHH
Q 000692 170 AVYGRDEDKARVLKIVLKIDP-------NDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRI 242 (1349)
Q Consensus 170 ~~~Gr~~~~~~l~~~l~~~~~-------~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 242 (1349)
.+=|.++-+.++.+.+..+-. -+-..++-|..+|++|.|||++|+++++..... | +.+..+ ++
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n-F-----lsvkgp----EL 504 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN-F-----LSVKGP----EL 504 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC-e-----eeccCH----HH
Confidence 344566666666554443211 022467889999999999999999999975533 3 222221 11
Q ss_pred HHHHHHHccCCCCCcCChHHHHH-HHHHHhcCCceEEEEeCCCCCC-----------hhhHHHhhccCCCCCCCcEE--E
Q 000692 243 SKVILESITLSPCELKDLNSVQL-KLKEALFKKKYLIVLDDVWSKS-----------YDLWQALKSPFMVGAPDSRI--I 308 (1349)
Q Consensus 243 ~~~i~~~l~~~~~~~~~~~~~~~-~l~~~l~~~~~LlVlDdv~~~~-----------~~~~~~~~~~l~~~~~gs~i--l 308 (1349)
..... .+.+..+. .+.+.-+-.+.+|.||.++... ...+.++...+-.......| |
T Consensus 505 ----~sk~v------GeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~Vi 574 (693)
T KOG0730|consen 505 ----FSKYV------GESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVI 574 (693)
T ss_pred ----HHHhc------CchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEE
Confidence 11110 01111122 2222223456888888874310 01122333333222222223 3
Q ss_pred EEe-cchhHHHh-hc---CCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHH
Q 000692 309 VTT-RSVDVALT-MG---SGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESI 359 (1349)
Q Consensus 309 vTt-R~~~v~~~-~~---~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 359 (1349)
-.| |...+... +. ....+.++.-+.+.-.++|+.++.+.. ..+..++.++
T Consensus 575 AATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp-~~~~vdl~~L 629 (693)
T KOG0730|consen 575 AATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMP-FSEDVDLEEL 629 (693)
T ss_pred eccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCC-CCccccHHHH
Confidence 233 33333322 23 234677887788888889988884332 2333445444
No 228
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.18 E-value=0.023 Score=73.08 Aligned_cols=136 Identities=21% Similarity=0.237 Sum_probs=77.9
Q ss_pred CccccchhhHHHHHHHHhccCC---CCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDP---NDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKV 245 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~---~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 245 (1349)
..++|.+..++.+...+..... ..+....++.++|+.|+|||++|+.+++..... -...+-++.++-.....+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~-~~~~~~~d~s~~~~~~~~--- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS-EDAMIRLDMSEYMEKHTV--- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC-ccceEEEEchhccccccH---
Confidence 5689999999999888864322 112234567899999999999999998753211 122334444432221111
Q ss_pred HHHHccCCCC--CcCChHHHHHHHHHHhcCCc-eEEEEeCCCCCChhhHHHhhccCCCC-----------CCCcEEEEEe
Q 000692 246 ILESITLSPC--ELKDLNSVQLKLKEALFKKK-YLIVLDDVWSKSYDLWQALKSPFMVG-----------APDSRIIVTT 311 (1349)
Q Consensus 246 i~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~-~LlVlDdv~~~~~~~~~~~~~~l~~~-----------~~gs~ilvTt 311 (1349)
..-++.++. ...+... +.+.++.++ -++++|++.....+.+..+...+-.+ ...+-+|+||
T Consensus 585 -~~l~g~~~gyvg~~~~~~----l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Ts 659 (821)
T CHL00095 585 -SKLIGSPPGYVGYNEGGQ----LTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTS 659 (821)
T ss_pred -HHhcCCCCcccCcCccch----HHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeC
Confidence 111222211 1112222 334444454 58899999877777777776665432 2345566676
Q ss_pred cc
Q 000692 312 RS 313 (1349)
Q Consensus 312 R~ 313 (1349)
..
T Consensus 660 n~ 661 (821)
T CHL00095 660 NL 661 (821)
T ss_pred Cc
Confidence 64
No 229
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.18 E-value=0.014 Score=63.15 Aligned_cols=56 Identities=20% Similarity=0.192 Sum_probs=39.5
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcCCCCcc-----cCceEEEEecccccHHHHHHHHHHHc
Q 000692 194 SSFRLIPIVGMGGIGKTTLAREVYNDKSVED-----FDPKAWVCVSDDFDVLRISKVILESI 250 (1349)
Q Consensus 194 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~~i~~~l 250 (1349)
....++.|+|.+|+|||++|.+++....... ...++|++....++..++ .++++..
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~ 77 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERF 77 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHh
Confidence 4568999999999999999999975432221 268899998877665444 3344433
No 230
>PRK08181 transposase; Validated
Probab=96.17 E-value=0.0098 Score=64.45 Aligned_cols=100 Identities=18% Similarity=0.149 Sum_probs=53.3
Q ss_pred EEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCce
Q 000692 197 RLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKKKY 276 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 276 (1349)
.-+.++|.+|+|||.||.++++....+++ .++|+++ .++...+..... ....++. +. .+ .+.=
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~-~v~f~~~------~~L~~~l~~a~~-----~~~~~~~---l~-~l-~~~d 169 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGW-RVLFTRT------TDLVQKLQVARR-----ELQLESA---IA-KL-DKFD 169 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCC-ceeeeeH------HHHHHHHHHHHh-----CCcHHHH---HH-HH-hcCC
Confidence 35899999999999999999875432323 3455553 334444432211 1122222 22 22 2445
Q ss_pred EEEEeCCCCCChhhHH--HhhccCCCCCCCcEEEEEecc
Q 000692 277 LIVLDDVWSKSYDLWQ--ALKSPFMVGAPDSRIIVTTRS 313 (1349)
Q Consensus 277 LlVlDdv~~~~~~~~~--~~~~~l~~~~~gs~ilvTtR~ 313 (1349)
|||+||+.......|. .+...+-....+..+||||..
T Consensus 170 LLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~ 208 (269)
T PRK08181 170 LLILDDLAYVTKDQAETSVLFELISARYERRSILITANQ 208 (269)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 9999999543333332 222222111112358888875
No 231
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.17 E-value=0.11 Score=58.60 Aligned_cols=94 Identities=15% Similarity=0.124 Sum_probs=61.4
Q ss_pred CCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecc-hhHHHhhcC-CceEeCCCCChhhHHHHHHHHHhcCCCC
Q 000692 273 KKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRS-VDVALTMGS-GGYCELKLLSDDDCWSVFVKHAFESRDA 350 (1349)
Q Consensus 273 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~-~~v~~~~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~ 350 (1349)
+++=++|+|+++.-....+..+...+-.-.+++.+|++|.+ ..+...+.. -..+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 45558889999777777778887777655566666655554 444333222 2478999999999998886641 1
Q ss_pred CCchhHHHHHHHHHHHhCCChHHHHHHH
Q 000692 351 GTHENLESIRQKVVEKCKGLPLAARALG 378 (1349)
Q Consensus 351 ~~~~~~~~~~~~i~~~~~g~PLal~~~~ 378 (1349)
. + ...++..++|.|+.+..+.
T Consensus 206 --~-~----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 --A-D----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred --C-h----HHHHHHHcCCCHHHHHHHH
Confidence 1 1 1224778899997654443
No 232
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.15 E-value=0.039 Score=62.01 Aligned_cols=71 Identities=14% Similarity=0.111 Sum_probs=42.1
Q ss_pred CCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecchh-HHHhhcC-CceEeCCCCChhhHHHHHHHH
Q 000692 273 KKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRSVD-VALTMGS-GGYCELKLLSDDDCWSVFVKH 343 (1349)
Q Consensus 273 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~~-v~~~~~~-~~~~~l~~L~~~~~~~l~~~~ 343 (1349)
+++-++|+|++..-+...-..+...+.....+..+|++|.+.. +...+.. -..+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3444556688866554444445444433234566777777644 3322222 246889999999998888653
No 233
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.13 E-value=0.015 Score=61.65 Aligned_cols=48 Identities=15% Similarity=0.139 Sum_probs=36.3
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHH
Q 000692 194 SSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRIS 243 (1349)
Q Consensus 194 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 243 (1349)
+..+++.|+|.+|+|||++|.+++...... ...++|++... ++..++.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~-g~~v~yi~~e~-~~~~rl~ 57 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQ-GKKVVYIDTEG-LSPERFK 57 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCC-CCHHHHH
Confidence 456899999999999999999987654222 45789999875 5554443
No 234
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.11 E-value=0.053 Score=53.15 Aligned_cols=106 Identities=18% Similarity=0.154 Sum_probs=58.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCc
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKKK 275 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 275 (1349)
..+++|.|..|.|||||++.++..... ....+|+.-.. .+..-.. ...-+...-.+.+.+..++
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~~~~-------------~i~~~~~-lS~G~~~rv~laral~~~p 89 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEP--DEGIVTWGSTV-------------KIGYFEQ-LSGGEKMRLALAKLLLENP 89 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCeE-------------EEEEEcc-CCHHHHHHHHHHHHHhcCC
Confidence 358999999999999999999876432 22333332100 0000000 1111222233556666778
Q ss_pred eEEEEeCCCCC-ChhhHHHhhccCCCCCCCcEEEEEecchhHHHh
Q 000692 276 YLIVLDDVWSK-SYDLWQALKSPFMVGAPDSRIIVTTRSVDVALT 319 (1349)
Q Consensus 276 ~LlVlDdv~~~-~~~~~~~~~~~l~~~~~gs~ilvTtR~~~v~~~ 319 (1349)
-++++|+.... +.+....+...+... +..||++|.+.+....
T Consensus 90 ~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 90 NLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 89999997432 223333333333322 2468888887665543
No 235
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.11 E-value=0.045 Score=55.37 Aligned_cols=121 Identities=18% Similarity=0.183 Sum_probs=64.7
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcccC---------ceEEEEecccccHHHHHHHHHHHccCCCC----Cc--CCh
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVEDFD---------PKAWVCVSDDFDVLRISKVILESITLSPC----EL--KDL 260 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~---------~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~--~~~ 260 (1349)
..+++|+|+.|+|||||.+.+..+...-.+. .+.|+ .+ .+.++.++.... .. -+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 3689999999999999999986431110011 12232 11 345565554321 11 111
Q ss_pred -HHHHHHHHHHhcCC--ceEEEEeCCCCC-ChhhHHHhhccCCC-CCCCcEEEEEecchhHHHhhcCCceEeC
Q 000692 261 -NSVQLKLKEALFKK--KYLIVLDDVWSK-SYDLWQALKSPFMV-GAPDSRIIVTTRSVDVALTMGSGGYCEL 328 (1349)
Q Consensus 261 -~~~~~~l~~~l~~~--~~LlVlDdv~~~-~~~~~~~~~~~l~~-~~~gs~ilvTtR~~~v~~~~~~~~~~~l 328 (1349)
+...-.+.+.+..+ +=++++|+.-.. +....+.+...+.. ...|..||++|.+.+... . ..+.+.+
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~-~-~d~i~~l 161 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS-S-ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-h-CCEEEEE
Confidence 22223345555566 778889997442 22223333333322 124677889998877653 2 3344444
No 236
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.09 E-value=0.08 Score=62.74 Aligned_cols=158 Identities=16% Similarity=0.138 Sum_probs=81.7
Q ss_pred ccccchhhHHHHHHHHhc----cCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHH
Q 000692 170 AVYGRDEDKARVLKIVLK----IDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKV 245 (1349)
Q Consensus 170 ~~~Gr~~~~~~l~~~l~~----~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 245 (1349)
.+.|.+..++.+...... ...-+-..++-|.++|++|.|||.+|+++++..... | +-+.++. +
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~-~---~~l~~~~------l--- 295 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP-L---LRLDVGK------L--- 295 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC-E---EEEEhHH------h---
Confidence 466776655555432211 000022345778999999999999999999875432 1 1122111 1
Q ss_pred HHHHccCCCCCcCChHHHHHHHHHHhcCCceEEEEeCCCCCC-------hh-h----HHHhhccCCCCCCCcEEEEEecc
Q 000692 246 ILESITLSPCELKDLNSVQLKLKEALFKKKYLIVLDDVWSKS-------YD-L----WQALKSPFMVGAPDSRIIVTTRS 313 (1349)
Q Consensus 246 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------~~-~----~~~~~~~l~~~~~gs~ilvTtR~ 313 (1349)
.....+ .....+.+.+...-...+.+|++|+++... .. . ...+...+.....+.-||.||.+
T Consensus 296 -~~~~vG-----ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~ 369 (489)
T CHL00195 296 -FGGIVG-----ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANN 369 (489)
T ss_pred -cccccC-----hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCC
Confidence 111000 011112222222223578999999985310 00 0 11122222222334446667765
Q ss_pred hhH-HHhh----cCCceEeCCCCChhhHHHHHHHHHhc
Q 000692 314 VDV-ALTM----GSGGYCELKLLSDDDCWSVFVKHAFE 346 (1349)
Q Consensus 314 ~~v-~~~~----~~~~~~~l~~L~~~~~~~l~~~~~~~ 346 (1349)
... ...+ .-...+.++.-+.++-.++|..+..+
T Consensus 370 ~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 370 IDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred hhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 432 2122 22346888888999999999888744
No 237
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.07 E-value=0.018 Score=56.45 Aligned_cols=117 Identities=17% Similarity=0.112 Sum_probs=59.6
Q ss_pred EEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecc---cccHHHHHHHHHHHc-----cCCCC-CcCChH------
Q 000692 197 RLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSD---DFDVLRISKVILESI-----TLSPC-ELKDLN------ 261 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l-----~~~~~-~~~~~~------ 261 (1349)
..|-|++-.|.||||.|...+-+.-.+++. +.++.+-. ......+++.+ ..+ +.... ...+..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~-v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYR-VGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCe-EEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHH
Confidence 477888888999999998877654323232 33332221 22333333332 000 00000 001111
Q ss_pred -HHHHHHHHHhcC-CceEEEEeCCCCC---ChhhHHHhhccCCCCCCCcEEEEEecchh
Q 000692 262 -SVQLKLKEALFK-KKYLIVLDDVWSK---SYDLWQALKSPFMVGAPDSRIIVTTRSVD 315 (1349)
Q Consensus 262 -~~~~~l~~~l~~-~~~LlVlDdv~~~---~~~~~~~~~~~l~~~~~gs~ilvTtR~~~ 315 (1349)
+..+..++.+.. +-=|+|||++-.. .....+.+...+.....+..||+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 122233444444 4459999998321 12233445555544556789999999854
No 238
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.06 E-value=0.016 Score=62.86 Aligned_cols=88 Identities=26% Similarity=0.309 Sum_probs=54.3
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCCCCc----c-cCceEEEEecccccHHHHHHHHHHHccCCCC---------CcCCh
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDKSVE----D-FDPKAWVCVSDDFDVLRISKVILESITLSPC---------ELKDL 260 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~----~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~ 260 (1349)
...+.=|+|.+|+|||+||.+++-..... + -..++|++....++.+++. +|+++...... ...+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 45699999999999999999887543321 2 3468999988888887775 56666543221 11233
Q ss_pred HHHHHH---HHHHh-cCCceEEEEeCC
Q 000692 261 NSVQLK---LKEAL-FKKKYLIVLDDV 283 (1349)
Q Consensus 261 ~~~~~~---l~~~l-~~~~~LlVlDdv 283 (1349)
+++... +...+ ..+--|||+|.+
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHhhccccceEEEEecch
Confidence 333322 22233 234458888887
No 239
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.06 E-value=0.014 Score=62.55 Aligned_cols=47 Identities=15% Similarity=0.162 Sum_probs=35.1
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHH
Q 000692 194 SSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRI 242 (1349)
Q Consensus 194 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 242 (1349)
....++.|+|.+|+|||++|.+++...... ...++|++.. .++...+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~~-~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAAKN-GKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEECC-CCCHHHH
Confidence 456899999999999999999988754322 4568899887 4444433
No 240
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.02 E-value=0.1 Score=66.68 Aligned_cols=178 Identities=16% Similarity=0.124 Sum_probs=94.4
Q ss_pred CccccchhhHHHHHHHHhccCC-------CCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDP-------NDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLR 241 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~-------~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 241 (1349)
..+.|.+..++++.+.+...-. -+-...+-|.++|++|+|||++|+++++..... | +.+..+ +
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~-f---i~v~~~------~ 522 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN-F---IAVRGP------E 522 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC-E---EEEehH------H
Confidence 3467888887777776542110 011234568999999999999999999875422 2 222211 1
Q ss_pred HHHHHHHHccCCCCCcCChHHHHH-HHHHHhcCCceEEEEeCCCCC------C--h----hhHHHhhccCCC--CCCCcE
Q 000692 242 ISKVILESITLSPCELKDLNSVQL-KLKEALFKKKYLIVLDDVWSK------S--Y----DLWQALKSPFMV--GAPDSR 306 (1349)
Q Consensus 242 ~~~~i~~~l~~~~~~~~~~~~~~~-~l~~~l~~~~~LlVlDdv~~~------~--~----~~~~~~~~~l~~--~~~gs~ 306 (1349)
++.... .+.+.... .+...-+..+.+|++|+++.- . . ....++...+.. ...+.-
T Consensus 523 ----l~~~~v------Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 523 ----ILSKWV------GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred ----Hhhccc------CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 111111 11122222 223333467899999998431 0 0 011223222221 123455
Q ss_pred EEEEecchhHHH-hh----cCCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCCh
Q 000692 307 IIVTTRSVDVAL-TM----GSGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLP 371 (1349)
Q Consensus 307 ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 371 (1349)
||.||...+..+ .+ .-...+.++..+.++-.++|+.+..+ .......++ ..+++.+.|.-
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~-~~~~~~~~l----~~la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS-MPLAEDVDL----EELAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC-CCCCccCCH----HHHHHHcCCCC
Confidence 666776544332 11 12346888888999988898766532 222222233 44567777654
No 241
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.01 E-value=0.065 Score=54.95 Aligned_cols=118 Identities=18% Similarity=0.111 Sum_probs=61.1
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCC---------------CCcCCh
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSP---------------CELKDL 260 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---------------~~~~~~ 260 (1349)
..+++|.|..|.|||||++.++..... ....+++.-. +........-+.++.-. .....-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G 102 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKP--QQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHH
Confidence 358999999999999999999876432 1233333211 11111111111111100 011111
Q ss_pred HHHHHHHHHHhcCCceEEEEeCCCCC-ChhhHHHhhccCCCCCCCcEEEEEecchhHHH
Q 000692 261 NSVQLKLKEALFKKKYLIVLDDVWSK-SYDLWQALKSPFMVGAPDSRIIVTTRSVDVAL 318 (1349)
Q Consensus 261 ~~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~~~~~l~~~~~gs~ilvTtR~~~v~~ 318 (1349)
+...-.+.+.+-.++=++++|+.... +....+.+...+.....+..||++|.+.+...
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 22223455666778889999998542 22222233332222223677888888877654
No 242
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.00 E-value=0.038 Score=63.48 Aligned_cols=142 Identities=20% Similarity=0.144 Sum_probs=81.5
Q ss_pred cccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc--------------------cCceEE
Q 000692 171 VYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED--------------------FDPKAW 230 (1349)
Q Consensus 171 ~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~--------------------f~~~~w 230 (1349)
++|-+....++..+..... .....+.++|+.|+||||+|..+++...-.. ...+..
T Consensus 3 ~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~le 78 (325)
T COG0470 3 LVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLE 78 (325)
T ss_pred cccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEE
Confidence 5677777788888876432 1233599999999999999999987643111 123334
Q ss_pred EEeccccc---HHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEE
Q 000692 231 VCVSDDFD---VLRISKVILESITLSPCELKDLNSVQLKLKEALFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRI 307 (1349)
Q Consensus 231 v~~~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~i 307 (1349)
+..+.... ..+..+++.+....... .++.-++++|+++.-..+.-..+...+......+.+
T Consensus 79 l~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~ 142 (325)
T COG0470 79 LNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRF 142 (325)
T ss_pred ecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEE
Confidence 44443333 22333333333221110 356789999999665555555565555555567788
Q ss_pred EEEecc-hhHHHhhcCC-ceEeCCCCC
Q 000692 308 IVTTRS-VDVALTMGSG-GYCELKLLS 332 (1349)
Q Consensus 308 lvTtR~-~~v~~~~~~~-~~~~l~~L~ 332 (1349)
|++|.. ..+...+... ..+++.+.+
T Consensus 143 il~~n~~~~il~tI~SRc~~i~f~~~~ 169 (325)
T COG0470 143 ILITNDPSKILPTIRSRCQRIRFKPPS 169 (325)
T ss_pred EEEcCChhhccchhhhcceeeecCCch
Confidence 887773 2333222221 246666633
No 243
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.061 Score=63.29 Aligned_cols=162 Identities=16% Similarity=0.072 Sum_probs=88.3
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccc--cHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhc
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDF--DVLRISKVILESITLSPCELKDLNSVQLKLKEALF 272 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 272 (1349)
+...|.|.|..|+|||+||+++++.......-.+.+|+++.-. ..+.+++.+ ...+.+.+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l-----------------~~vfse~~~ 492 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFL-----------------NNVFSEALW 492 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHH-----------------HHHHHHHHh
Confidence 4567899999999999999999998763325556667666432 222232221 123445566
Q ss_pred CCceEEEEeCCCCC------ChhhHH-----------HhhccCCCCCCCcEEEEEecchhHHH-hhcC----CceEeCCC
Q 000692 273 KKKYLIVLDDVWSK------SYDLWQ-----------ALKSPFMVGAPDSRIIVTTRSVDVAL-TMGS----GGYCELKL 330 (1349)
Q Consensus 273 ~~~~LlVlDdv~~~------~~~~~~-----------~~~~~l~~~~~gs~ilvTtR~~~v~~-~~~~----~~~~~l~~ 330 (1349)
-.+-+|||||++-. .-.+|. ++...+...++.-++|.|.....-.. .+.. .....+..
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 78999999998421 111121 12222222222234455555432221 1111 12577888
Q ss_pred CChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCC-hHHHHHH
Q 000692 331 LSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGL-PLAARAL 377 (1349)
Q Consensus 331 L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~ 377 (1349)
+..++-.++++......-.. ...+...-+..+|+|. |.-+.++
T Consensus 573 p~~~~R~~IL~~~~s~~~~~----~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 573 PAVTRRKEILTTIFSKNLSD----ITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred cchhHHHHHHHHHHHhhhhh----hhhHHHHHHHHhcCCccchhHHHH
Confidence 88888888777655221111 1122223377788764 5555444
No 244
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.99 E-value=0.0066 Score=61.70 Aligned_cols=100 Identities=20% Similarity=0.234 Sum_probs=51.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCc
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKKK 275 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 275 (1349)
..-+.++|..|+|||.||.++++....+++ .+.|+++ .+++..+-. ... .....+. + +.+. +-
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~-~v~f~~~------~~L~~~l~~----~~~-~~~~~~~---~-~~l~-~~ 109 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGY-SVLFITA------SDLLDELKQ----SRS-DGSYEEL---L-KRLK-RV 109 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT---EEEEEH------HHHHHHHHC----CHC-CTTHCHH---H-HHHH-TS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCc-ceeEeec------Cceeccccc----ccc-ccchhhh---c-Cccc-cc
Confidence 357999999999999999999876543333 3556653 333333322 111 1122222 2 2233 34
Q ss_pred eEEEEeCCCCCChhhHHH--hhccCCC-CCCCcEEEEEecc
Q 000692 276 YLIVLDDVWSKSYDLWQA--LKSPFMV-GAPDSRIIVTTRS 313 (1349)
Q Consensus 276 ~LlVlDdv~~~~~~~~~~--~~~~l~~-~~~gs~ilvTtR~ 313 (1349)
=|||+||+-.....+|.. +...+.. ..++ .+||||..
T Consensus 110 dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 110 DLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp SCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred cEecccccceeeecccccccchhhhhHhhccc-CeEeeCCC
Confidence 577899996655445543 1111110 0123 58888874
No 245
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.13 Score=58.49 Aligned_cols=54 Identities=26% Similarity=0.321 Sum_probs=40.8
Q ss_pred ccccch---hhHHHHHHHHhccCC---CCCCCcEEEEEEccCCChHHHHHHHHHcCCCCc
Q 000692 170 AVYGRD---EDKARVLKIVLKIDP---NDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVE 223 (1349)
Q Consensus 170 ~~~Gr~---~~~~~l~~~l~~~~~---~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~ 223 (1349)
.+-|-| .|+++|+++|..+.. -++.-++-|.++|++|.|||-||++++-...+-
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP 364 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP 364 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC
Confidence 355665 467888888866532 134557889999999999999999999876654
No 246
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.96 E-value=0.017 Score=63.83 Aligned_cols=86 Identities=19% Similarity=0.115 Sum_probs=56.5
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCC-----CcCChHHHHHHH
Q 000692 193 DSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPC-----ELKDLNSVQLKL 267 (1349)
Q Consensus 193 ~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 267 (1349)
-+..+++-|+|.+|+||||||.+++...... -..++||+..+.++.. .+++++.... .....++....+
T Consensus 52 lp~G~iteI~G~~GsGKTtLaL~~~~~~~~~-g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 52 LPRGRIIEIYGPESSGKTTLALHAIAEAQKA-GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 3566899999999999999999987654322 4567899887766653 3444443221 233455555555
Q ss_pred HHHhc-CCceEEEEeCCC
Q 000692 268 KEALF-KKKYLIVLDDVW 284 (1349)
Q Consensus 268 ~~~l~-~~~~LlVlDdv~ 284 (1349)
....+ +..-+||+|-|-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 54443 456799999983
No 247
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.95 E-value=0.017 Score=63.87 Aligned_cols=84 Identities=20% Similarity=0.140 Sum_probs=55.5
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCC-----CcCChHHHHHHHH
Q 000692 194 SSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPC-----ELKDLNSVQLKLK 268 (1349)
Q Consensus 194 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 268 (1349)
+..+++-|+|++|+||||||.+++...... -..++||+..+.++.. .+++++.... ...+.++....+.
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~~~~~-g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEAQKL-GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 456899999999999999999987654322 4578899988777653 3344443211 2234455555554
Q ss_pred HHhc-CCceEEEEeCC
Q 000692 269 EALF-KKKYLIVLDDV 283 (1349)
Q Consensus 269 ~~l~-~~~~LlVlDdv 283 (1349)
...+ +..-+||+|-|
T Consensus 127 ~li~s~~~~lIVIDSv 142 (325)
T cd00983 127 SLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHhccCCCEEEEcch
Confidence 4443 45678999997
No 248
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.94 E-value=0.0034 Score=38.34 Aligned_cols=19 Identities=32% Similarity=0.726 Sum_probs=9.1
Q ss_pred cceEEecCCCCcccccccc
Q 000692 606 LRYLNFSDTKIKCLPESVT 624 (1349)
Q Consensus 606 Lr~L~Ls~~~i~~lp~~i~ 624 (1349)
|++|||++|.++.+|++|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4455555555444444433
No 249
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.93 E-value=0.023 Score=58.68 Aligned_cols=88 Identities=18% Similarity=0.163 Sum_probs=53.3
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEeccc-ccHHHHHHHHHHHccCCCC---CcCChHHHH-HHHHHH
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDD-FDVLRISKVILESITLSPC---ELKDLNSVQ-LKLKEA 270 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~~~-~~l~~~ 270 (1349)
++|+.++|+.|+||||.+.+++.....+ -..+..++.... ....+-++..++.++.+-. ...+..+.. +.+.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF 79 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH
Confidence 4799999999999999999888766444 345666665432 2445667778888876532 122333333 333333
Q ss_pred hcCCceEEEEeCCC
Q 000692 271 LFKKKYLIVLDDVW 284 (1349)
Q Consensus 271 l~~~~~LlVlDdv~ 284 (1349)
-.++.=+|++|=.-
T Consensus 80 ~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 80 RKKGYDLVLIDTAG 93 (196)
T ss_dssp HHTTSSEEEEEE-S
T ss_pred hhcCCCEEEEecCC
Confidence 22334588888764
No 250
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.93 E-value=0.027 Score=62.81 Aligned_cols=59 Identities=20% Similarity=0.247 Sum_probs=43.3
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcCCCCc----c-cCceEEEEecccccHHHHHHHHHHHccCC
Q 000692 194 SSFRLIPIVGMGGIGKTTLAREVYNDKSVE----D-FDPKAWVCVSDDFDVLRISKVILESITLS 253 (1349)
Q Consensus 194 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~----~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 253 (1349)
...+++-|+|.+|+|||+++.+++-..... + -..++||+....++.+++. ++++.++..
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d 157 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVD 157 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCC
Confidence 456899999999999999998876432211 1 3478999999888888775 456666543
No 251
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.87 E-value=0.022 Score=60.83 Aligned_cols=44 Identities=16% Similarity=0.128 Sum_probs=32.9
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEeccccc
Q 000692 194 SSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFD 238 (1349)
Q Consensus 194 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~ 238 (1349)
....++.|+|.+|+||||+|.+++.....+ -..++|++....+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~-g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQ-GKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEECCCCCH
Confidence 456899999999999999999988764322 34577887655543
No 252
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.87 E-value=0.0051 Score=63.22 Aligned_cols=85 Identities=25% Similarity=0.280 Sum_probs=65.0
Q ss_pred cCCCcccEEEecccccc-----ccCccccCCCccceEEecCCCCc----ccc-------cccccCCCCcEEEecCccCCC
Q 000692 578 PKFKKLRVLSLRRYYIT-----EVPISIGCLRHLRYLNFSDTKIK----CLP-------ESVTSLLNLEILILRDCLHLL 641 (1349)
Q Consensus 578 ~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~Lr~L~Ls~~~i~----~lp-------~~i~~L~~L~~L~l~~~~~~~ 641 (1349)
..+..+..+|||||.|. .+-..|.+-.+|+..+++.-... ++| +.+-++++|++.+|+.|..-.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 34788899999999986 24456777889999999874221 333 455778999999999997666
Q ss_pred cCchh----hhccccccEEEecCCC
Q 000692 642 KLPSS----IGNLVKLLHLDIEGAN 662 (1349)
Q Consensus 642 ~lp~~----i~~L~~L~~L~l~~~~ 662 (1349)
..|+. |++-+.|.||.+++|.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCC
Confidence 66654 6778899999999887
No 253
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.86 E-value=0.056 Score=62.96 Aligned_cols=90 Identities=21% Similarity=0.134 Sum_probs=51.4
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEeccc-ccHHHHHHHHHHHccCCCCC---cCChHHHHHHHHH
Q 000692 194 SSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDD-FDVLRISKVILESITLSPCE---LKDLNSVQLKLKE 269 (1349)
Q Consensus 194 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 269 (1349)
..+.+|.++|.+|+||||+|..++.....+++ .+.-|++... ....+.++.++++++.+... ..+.........+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 35789999999999999999999876543323 3334443321 12344556666666543221 1222232322233
Q ss_pred HhcCCceEEEEeCCCC
Q 000692 270 ALFKKKYLIVLDDVWS 285 (1349)
Q Consensus 270 ~l~~~~~LlVlDdv~~ 285 (1349)
.+.+. -+||+|..-.
T Consensus 172 ~~~~~-DvVIIDTAGr 186 (437)
T PRK00771 172 KFKKA-DVIIVDTAGR 186 (437)
T ss_pred HhhcC-CEEEEECCCc
Confidence 33333 5788888743
No 254
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.85 E-value=0.028 Score=57.63 Aligned_cols=36 Identities=28% Similarity=0.514 Sum_probs=27.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEE
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWV 231 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv 231 (1349)
...+|.+.|+.|+||||+|+.++...... +..++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~-~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLK-YSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcEEEE
Confidence 45699999999999999999998865432 4444454
No 255
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.84 E-value=0.077 Score=55.22 Aligned_cols=217 Identities=17% Similarity=0.168 Sum_probs=110.0
Q ss_pred cccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCC---Ccc--cCceEEEEecccc-cHHHHHH
Q 000692 171 VYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKS---VED--FDPKAWVCVSDDF-DVLRISK 244 (1349)
Q Consensus 171 ~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~---~~~--f~~~~wv~~~~~~-~~~~~~~ 244 (1349)
..++++....+..... ........++|+.|.||-|.+..+.+... +.. -+...|.+.+... .+..+-.
T Consensus 15 l~~~~e~~~~Lksl~~------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSS------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhcc------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 5566666666666543 23467889999999999998877665432 111 3445555433320 0000000
Q ss_pred HHHHHccCCCCCcCChHHHHHHHHHHh-------c-CCce-EEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecch-
Q 000692 245 VILESITLSPCELKDLNSVQLKLKEAL-------F-KKKY-LIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRSV- 314 (1349)
Q Consensus 245 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-------~-~~~~-LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~- 314 (1349)
.-.-++...+....|..-.++.+++.- + .+.| ++|+-.+++-..+.-.++....-.-...+|+|+...+.
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~S 168 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTS 168 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcc
Confidence 000000111111112111222222221 1 2344 55565554433444444544443334677887754431
Q ss_pred hHHHhhcCC-ceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHHhhccC--C------
Q 000692 315 DVALTMGSG-GYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARALGGLLRSR--Q------ 385 (1349)
Q Consensus 315 ~v~~~~~~~-~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~--~------ 385 (1349)
.+-..+... -.+++...+++|....+.+.+...+-.- | .+++.+|+++++|.---...+--.++-+ +
T Consensus 169 riIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~l--p--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~ 244 (351)
T KOG2035|consen 169 RIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQL--P--KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQ 244 (351)
T ss_pred cchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccC--c--HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCC
Confidence 122222221 2578999999999999998875443322 1 6788999999999753332322222211 1
Q ss_pred --ChHHHHHHHhhc
Q 000692 386 --RFVEWDDILDSK 397 (1349)
Q Consensus 386 --~~~~w~~~~~~~ 397 (1349)
..-+|+-..++.
T Consensus 245 ~i~~~dWe~~i~e~ 258 (351)
T KOG2035|consen 245 VIPKPDWEIYIQEI 258 (351)
T ss_pred CCCCccHHHHHHHH
Confidence 235788777653
No 256
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.84 E-value=0.064 Score=54.34 Aligned_cols=104 Identities=15% Similarity=0.135 Sum_probs=57.4
Q ss_pred EEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEE------ecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHH
Q 000692 197 RLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVC------VSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEA 270 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~------~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 270 (1349)
.+++|+|..|+|||||++.++.-.... ...+++. +.+... ...-+...-.+.+.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~lara 85 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPN--GDNDEWDGITPVYKPQYID------------------LSGGELQRVAIAAA 85 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCC--CcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHHHH
Confidence 599999999999999999988754321 2222221 111110 11112223345566
Q ss_pred hcCCceEEEEeCCCCC-ChhhHHHhhccCCC--CCCCcEEEEEecchhHHHhh
Q 000692 271 LFKKKYLIVLDDVWSK-SYDLWQALKSPFMV--GAPDSRIIVTTRSVDVALTM 320 (1349)
Q Consensus 271 l~~~~~LlVlDdv~~~-~~~~~~~~~~~l~~--~~~gs~ilvTtR~~~v~~~~ 320 (1349)
+..++-++++|+.-.. +......+...+.. ...+..||++|.+......+
T Consensus 86 l~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~ 138 (177)
T cd03222 86 LLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYL 138 (177)
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHh
Confidence 6778889999997442 22222223222221 11235688888877655443
No 257
>PRK09354 recA recombinase A; Provisional
Probab=95.81 E-value=0.023 Score=63.41 Aligned_cols=85 Identities=19% Similarity=0.133 Sum_probs=57.1
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCC-----CcCChHHHHHHHH
Q 000692 194 SSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPC-----ELKDLNSVQLKLK 268 (1349)
Q Consensus 194 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 268 (1349)
+..+++-|+|++|+||||||.+++...... -..++||+....++.. .+++++.... +....++....+.
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~~~~-G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEAQKA-GGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 566899999999999999999987654322 4678899988877753 3444443221 2234555555555
Q ss_pred HHhc-CCceEEEEeCCC
Q 000692 269 EALF-KKKYLIVLDDVW 284 (1349)
Q Consensus 269 ~~l~-~~~~LlVlDdv~ 284 (1349)
..++ +..-+||+|-|-
T Consensus 132 ~li~s~~~~lIVIDSva 148 (349)
T PRK09354 132 TLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHhhcCCCCEEEEeChh
Confidence 5443 456799999983
No 258
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.81 E-value=0.0063 Score=57.89 Aligned_cols=23 Identities=43% Similarity=0.554 Sum_probs=21.1
Q ss_pred EEEEEccCCChHHHHHHHHHcCC
Q 000692 198 LIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 198 vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
+|+|.|++|+||||+|+++++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998864
No 259
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.091 Score=55.93 Aligned_cols=79 Identities=20% Similarity=0.291 Sum_probs=45.7
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCc--c-cCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhc
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVE--D-FDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALF 272 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~--~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 272 (1349)
-|+|.++|++|.|||+|++++++...++ + |....-+.+... ++..+-... ..+-+..+.+++++.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh--------sLFSKWFsE--SgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH--------SLFSKWFSE--SGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh--------HHHHHHHhh--hhhHHHHHHHHHHHHHh
Confidence 4789999999999999999999987554 2 444444433221 111111110 11223444555666665
Q ss_pred CCc--eEEEEeCCC
Q 000692 273 KKK--YLIVLDDVW 284 (1349)
Q Consensus 273 ~~~--~LlVlDdv~ 284 (1349)
++. +.+.+|.|.
T Consensus 247 d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVE 260 (423)
T ss_pred CCCcEEEEEeHHHH
Confidence 554 344568883
No 260
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.80 E-value=0.054 Score=63.52 Aligned_cols=189 Identities=16% Similarity=0.098 Sum_probs=107.9
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILE 248 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 248 (1349)
..++|.+.....+...+.... -...-...|+-|+||||+|+-++...--.. | ...+++..-...+.|..
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~-----~-~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCEN-----G-PTAEPCGKCISCKEINE 84 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCCC-----C-CCCCcchhhhhhHhhhc
Confidence 357999999999999886432 345567889999999999999876432110 0 11112222222233322
Q ss_pred Hcc-----CC---CCCcCChHHHHHHHHHH-hcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEec-chhHHH
Q 000692 249 SIT-----LS---PCELKDLNSVQLKLKEA-LFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTR-SVDVAL 318 (1349)
Q Consensus 249 ~l~-----~~---~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR-~~~v~~ 318 (1349)
.-. .+ ....+++.++.+.+.-. .+++.=+.|+|.|.--+...|..+...+-.-....+.|+.|. ...+..
T Consensus 85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~ 164 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPN 164 (515)
T ss_pred CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCch
Confidence 200 00 01122222222222111 134555889999976667788888877754445555555554 444443
Q ss_pred hhcC-CceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChH
Q 000692 319 TMGS-GGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPL 372 (1349)
Q Consensus 319 ~~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 372 (1349)
..-+ -+.|.++.++.++-...+...+.......+ .+...-|++..+|..-
T Consensus 165 TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e----~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 165 TILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE----EDALSLIARAAEGSLR 215 (515)
T ss_pred hhhhccccccccCCCHHHHHHHHHHHHHhcCCccC----HHHHHHHHHHcCCChh
Confidence 3222 247899999999999888887744333322 2333456677776543
No 261
>PRK12377 putative replication protein; Provisional
Probab=95.80 E-value=0.027 Score=60.29 Aligned_cols=101 Identities=20% Similarity=0.086 Sum_probs=55.5
Q ss_pred EEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCce
Q 000692 197 RLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKKKY 276 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 276 (1349)
..+.++|..|+|||+||.++++....+ ...++++++. ++...+-..... .....+ +.+.+ .+-=
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~-g~~v~~i~~~------~l~~~l~~~~~~----~~~~~~----~l~~l-~~~d 165 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAK-GRSVIVVTVP------DVMSRLHESYDN----GQSGEK----FLQEL-CKVD 165 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEEEHH------HHHHHHHHHHhc----cchHHH----HHHHh-cCCC
Confidence 578999999999999999999876433 3345666543 333333333211 011111 22222 4567
Q ss_pred EEEEeCCCCCChhhHHH--hhccCCC-CCCCcEEEEEecc
Q 000692 277 LIVLDDVWSKSYDLWQA--LKSPFMV-GAPDSRIIVTTRS 313 (1349)
Q Consensus 277 LlVlDdv~~~~~~~~~~--~~~~l~~-~~~gs~ilvTtR~ 313 (1349)
|||+||+.......|.. +...+-. ..+.--+||||-.
T Consensus 166 LLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 166 LLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999995443344532 2222211 1122346777763
No 262
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.79 E-value=0.073 Score=54.13 Aligned_cols=118 Identities=18% Similarity=0.179 Sum_probs=60.6
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEeccc--ccHHHHHHHHHHHccCCCC--Cc---------CC-hH
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDD--FDVLRISKVILESITLSPC--EL---------KD-LN 261 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~--~~---------~~-~~ 261 (1349)
..+++|.|..|.|||||++.++.-... ....+++.-... ...... ...++.-.+ .. -+ -+
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G~ 101 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYDP--TSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGGQ 101 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCC--CCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHHH
Confidence 358999999999999999999876432 233333321110 001111 111111000 00 11 11
Q ss_pred HHHHHHHHHhcCCceEEEEeCCCCC-ChhhHHHhhccCCCCCCCcEEEEEecchhHHHh
Q 000692 262 SVQLKLKEALFKKKYLIVLDDVWSK-SYDLWQALKSPFMVGAPDSRIIVTTRSVDVALT 319 (1349)
Q Consensus 262 ~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~~~~~l~~~~~gs~ilvTtR~~~v~~~ 319 (1349)
...-.+.+.+..++-++++|+-... +......+...+.....+..||++|.+.+....
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 1222355666778889999997542 222222332222221235678888888766643
No 263
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.75 E-value=0.054 Score=58.27 Aligned_cols=89 Identities=20% Similarity=0.221 Sum_probs=54.4
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccc-cHHHHHHHHHHHccCCCC-----CcCC--hH-----
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDF-DVLRISKVILESITLSPC-----ELKD--LN----- 261 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~~~~--~~----- 261 (1349)
+.+.++|+|..|+||||||+++++....+.-+.++++-+.+.. .+.++.+.+.+.=..... ..++ ..
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 3467899999999999999999987654323456666666544 445555555442111110 1111 11
Q ss_pred HHHHHHHHHh--c-CCceEEEEeCC
Q 000692 262 SVQLKLKEAL--F-KKKYLIVLDDV 283 (1349)
Q Consensus 262 ~~~~~l~~~l--~-~~~~LlVlDdv 283 (1349)
...-.+.+++ + ++.+|+|+||+
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1122344555 3 88999999998
No 264
>PHA00729 NTP-binding motif containing protein
Probab=95.75 E-value=0.022 Score=59.13 Aligned_cols=26 Identities=42% Similarity=0.443 Sum_probs=22.4
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCC
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
....|.|+|.+|+||||||..+++..
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999998863
No 265
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.75 E-value=0.039 Score=59.31 Aligned_cols=89 Identities=19% Similarity=0.178 Sum_probs=54.3
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcCCCCcc-----cCceEEEEecccccHHHHHHHHHHHccCCCC---------CcCC
Q 000692 194 SSFRLIPIVGMGGIGKTTLAREVYNDKSVED-----FDPKAWVCVSDDFDVLRISKVILESITLSPC---------ELKD 259 (1349)
Q Consensus 194 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~ 259 (1349)
....++.|+|.+|+|||++|.+++......+ -..++|++....++...+. ++.+....... ...+
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYN 95 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCC
Confidence 4567999999999999999999876532221 1567899987776654443 33333221110 1234
Q ss_pred hHHHHHHHHHHhc----CCceEEEEeCC
Q 000692 260 LNSVQLKLKEALF----KKKYLIVLDDV 283 (1349)
Q Consensus 260 ~~~~~~~l~~~l~----~~~~LlVlDdv 283 (1349)
.++....+.+... .+.-++|+|.+
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~lvVIDsi 123 (226)
T cd01393 96 GEQQLEIVEELERIMSSGRVDLVVVDSV 123 (226)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence 4444444444332 34458888887
No 266
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.74 E-value=0.0039 Score=61.07 Aligned_cols=84 Identities=24% Similarity=0.262 Sum_probs=45.7
Q ss_pred EEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCcC-ChHHHHHHHHHHhcCCceE
Q 000692 199 IPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCELK-DLNSVQLKLKEALFKKKYL 277 (1349)
Q Consensus 199 v~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~~~~~L 277 (1349)
|.++|.+|+|||++|+.+++.... ...-+.++...+..++... ......... ....+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~----~~~~i~~~~~~~~~dl~g~----~~~~~~~~~~~~~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR----PVIRINCSSDTTEEDLIGS----YDPSNGQFEFKDGPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC----EEEEEE-TTTSTHHHHHCE----EET-TTTTCEEE-CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc----ceEEEEeccccccccceee----eeecccccccccccccccc-----cceeE
Confidence 679999999999999999886521 2334566776666655432 211100000 000000001 17889
Q ss_pred EEEeCCCCCChhhHHHhh
Q 000692 278 IVLDDVWSKSYDLWQALK 295 (1349)
Q Consensus 278 lVlDdv~~~~~~~~~~~~ 295 (1349)
+|+|++.....+.+..+.
T Consensus 69 l~lDEin~a~~~v~~~L~ 86 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLL 86 (139)
T ss_dssp EEESSCGG--HHHHHTTH
T ss_pred EEECCcccCCHHHHHHHH
Confidence 999999655544444443
No 267
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.71 E-value=0.079 Score=54.44 Aligned_cols=121 Identities=17% Similarity=0.166 Sum_probs=65.7
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEE---ecccccHHHH------HHHHHHHccCCCC------CcCCh
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVC---VSDDFDVLRI------SKVILESITLSPC------ELKDL 260 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~---~~~~~~~~~~------~~~i~~~l~~~~~------~~~~~ 260 (1349)
..+++|.|..|.|||||++.++..... ....+++. +.. .+.... .-++++.++.... ....-
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~~--~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLKP--SSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 358999999999999999999875432 23333332 111 111111 1123444443211 11122
Q ss_pred HHHHHHHHHHhcCCceEEEEeCCCCC-ChhhHHHhhccCCCC-CC-CcEEEEEecchhHHHh
Q 000692 261 NSVQLKLKEALFKKKYLIVLDDVWSK-SYDLWQALKSPFMVG-AP-DSRIIVTTRSVDVALT 319 (1349)
Q Consensus 261 ~~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~~~~~l~~~-~~-gs~ilvTtR~~~v~~~ 319 (1349)
+...-.+.+.+...+-++++|+.... +.+..+.+...+... .. |..||++|.+......
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 22333456667788899999997432 222333333333221 12 6678888887665533
No 268
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.70 E-value=0.05 Score=65.96 Aligned_cols=44 Identities=25% Similarity=0.337 Sum_probs=35.3
Q ss_pred ccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcC
Q 000692 170 AVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYND 219 (1349)
Q Consensus 170 ~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~ 219 (1349)
.++|.+..++.+...+... ....|.|+|..|+|||++|+.+++.
T Consensus 66 ~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 5899999998888776432 2356789999999999999998753
No 269
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.68 E-value=0.096 Score=55.32 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=70.3
Q ss_pred EEEEEEccCCChHHHHHHHHHcCCCC-cc----c----------CceEEEEecccc------cH----------------
Q 000692 197 RLIPIVGMGGIGKTTLAREVYNDKSV-ED----F----------DPKAWVCVSDDF------DV---------------- 239 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~~~~~-~~----f----------~~~~wv~~~~~~------~~---------------- 239 (1349)
..++|+|+.|.|||||.+.+..-... ++ | ..+.||.=...+ ++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 69999999999999999999873210 10 1 235565321111 11
Q ss_pred ------HHHHHHHHHHccCCCC-----CcCChHHHHH-HHHHHhcCCceEEEEeCCCC----CChhhHHHhhccCCCCCC
Q 000692 240 ------LRISKVILESITLSPC-----ELKDLNSVQL-KLKEALFKKKYLIVLDDVWS----KSYDLWQALKSPFMVGAP 303 (1349)
Q Consensus 240 ------~~~~~~i~~~l~~~~~-----~~~~~~~~~~-~l~~~l~~~~~LlVlDdv~~----~~~~~~~~~~~~l~~~~~ 303 (1349)
.+...+.++.++...- ..-+-.+.++ .+.+.|..++=|+|||.--. ......-++...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 1334444555443321 1122233333 46778899999999998532 2223333444444433
Q ss_pred CcEEEEEecchhHHHh
Q 000692 304 DSRIIVTTRSVDVALT 319 (1349)
Q Consensus 304 gs~ilvTtR~~~v~~~ 319 (1349)
|..||++|-+-.....
T Consensus 189 g~tIl~vtHDL~~v~~ 204 (254)
T COG1121 189 GKTVLMVTHDLGLVMA 204 (254)
T ss_pred CCEEEEEeCCcHHhHh
Confidence 8889999998765544
No 270
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.68 E-value=0.028 Score=63.56 Aligned_cols=88 Identities=18% Similarity=0.211 Sum_probs=52.5
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCc-ccCceEEEEeccc-ccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVE-DFDPKAWVCVSDD-FDVLRISKVILESITLSPCELKDLNSVQLKLKEALFK 273 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~-~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 273 (1349)
.++++++|+.|+||||++.+++.....+ +...+..++.... ....+-++...+.++.+.....+..++...+.+ +.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-l~~ 215 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-LRN 215 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH-hcC
Confidence 4699999999999999999998764322 1234555553321 223455555666666554433343344444433 344
Q ss_pred CceEEEEeCCCC
Q 000692 274 KKYLIVLDDVWS 285 (1349)
Q Consensus 274 ~~~LlVlDdv~~ 285 (1349)
+ =+|++|.+-.
T Consensus 216 ~-DlVLIDTaG~ 226 (374)
T PRK14722 216 K-HMVLIDTIGM 226 (374)
T ss_pred C-CEEEEcCCCC
Confidence 4 5666998843
No 271
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.66 E-value=0.11 Score=52.34 Aligned_cols=116 Identities=15% Similarity=0.069 Sum_probs=60.8
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCc-c---cCc---eEEEEecccccHHHHHHHHHHHccC-CCCCcCChHHHHHHH
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVE-D---FDP---KAWVCVSDDFDVLRISKVILESITL-SPCELKDLNSVQLKL 267 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~-~---f~~---~~wv~~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~~~l 267 (1349)
..+++|+|..|.|||||++.++...... + ++. +.++ .+..... ...+.+.+.. .......-+...-.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~--~~tv~~nl~~~~~~~LS~G~~~rv~l 102 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLP--LGTLREQLIYPWDDVLSGGEQQRLAF 102 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccc--cccHHHHhhccCCCCCCHHHHHHHHH
Confidence 3589999999999999999998764321 1 221 2222 2222111 0122222211 112222233333445
Q ss_pred HHHhcCCceEEEEeCCCCC-ChhhHHHhhccCCCCCCCcEEEEEecchhHH
Q 000692 268 KEALFKKKYLIVLDDVWSK-SYDLWQALKSPFMVGAPDSRIIVTTRSVDVA 317 (1349)
Q Consensus 268 ~~~l~~~~~LlVlDdv~~~-~~~~~~~~~~~l~~~~~gs~ilvTtR~~~v~ 317 (1349)
.+.+-.++=++++|+--.. +.+....+...+... +..||++|.+....
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 6666778888999987432 222222333333222 35688888876654
No 272
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.65 E-value=0.13 Score=65.59 Aligned_cols=179 Identities=16% Similarity=0.107 Sum_probs=92.1
Q ss_pred ccccchhhHHHHHHHHhccCC-------CCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHH
Q 000692 170 AVYGRDEDKARVLKIVLKIDP-------NDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRI 242 (1349)
Q Consensus 170 ~~~Gr~~~~~~l~~~l~~~~~-------~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 242 (1349)
.+.|.+..++++.+++...-. -+-...+.|.++|++|+|||++|+.+++..... | +.++.+. +
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~-~---i~i~~~~------i 248 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY-F---ISINGPE------I 248 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe-E---EEEecHH------H
Confidence 478999999888887643210 011234678899999999999999998864321 2 2222111 1
Q ss_pred HHHHHHHccCCCCCcCChHHHHHHHHHHhcCCceEEEEeCCCCCC-----------hhhHHHhhccCCCC-CCCcEEEE-
Q 000692 243 SKVILESITLSPCELKDLNSVQLKLKEALFKKKYLIVLDDVWSKS-----------YDLWQALKSPFMVG-APDSRIIV- 309 (1349)
Q Consensus 243 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-----------~~~~~~~~~~l~~~-~~gs~ilv- 309 (1349)
. .... ......+...+.......+.+|++|++.... ......+...+... ..+..++|
T Consensus 249 ~----~~~~-----g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~ 319 (733)
T TIGR01243 249 M----SKYY-----GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIG 319 (733)
T ss_pred h----cccc-----cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEe
Confidence 1 0000 0011122223333345667899999984311 00112222222111 22333444
Q ss_pred Eecchh-HHHhhc----CCceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChH
Q 000692 310 TTRSVD-VALTMG----SGGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPL 372 (1349)
Q Consensus 310 TtR~~~-v~~~~~----~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 372 (1349)
||.... +...+. -...+.+...+.++-.+++..+..+. ....+.. ...+++.+.|.--
T Consensus 320 atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~-~l~~d~~----l~~la~~t~G~~g 382 (733)
T TIGR01243 320 ATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNM-PLAEDVD----LDKLAEVTHGFVG 382 (733)
T ss_pred ecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCC-CCccccC----HHHHHHhCCCCCH
Confidence 454332 211111 12357788888888888888654221 1111112 3556778877653
No 273
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.65 E-value=0.0054 Score=75.72 Aligned_cols=85 Identities=26% Similarity=0.325 Sum_probs=61.9
Q ss_pred hccCCCcccEEEecccccc--ccCccccCCCccceEEecCCCCcccccccccCCCCcEEEecCccCCCcCc--hhhhccc
Q 000692 576 LLPKFKKLRVLSLRRYYIT--EVPISIGCLRHLRYLNFSDTKIKCLPESVTSLLNLEILILRDCLHLLKLP--SSIGNLV 651 (1349)
Q Consensus 576 ~~~~l~~Lr~L~L~~~~i~--~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp--~~i~~L~ 651 (1349)
.-..++.||.|.+++-.+. ++-.-..++++|+.||+|+++|+.+ ..+++|++||+|.+++= ....-+ ..+-+|+
T Consensus 143 ig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnL-e~e~~~~l~~LF~L~ 220 (699)
T KOG3665|consen 143 IGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNL-EFESYQDLIDLFNLK 220 (699)
T ss_pred HhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCC-CCCchhhHHHHhccc
Confidence 3456788888888876553 3334456788899999999999888 77889999999988763 222211 3467888
Q ss_pred cccEEEecCCC
Q 000692 652 KLLHLDIEGAN 662 (1349)
Q Consensus 652 ~L~~L~l~~~~ 662 (1349)
+|++||++...
T Consensus 221 ~L~vLDIS~~~ 231 (699)
T KOG3665|consen 221 KLRVLDISRDK 231 (699)
T ss_pred CCCeeeccccc
Confidence 99999988765
No 274
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.64 E-value=0.061 Score=57.44 Aligned_cols=103 Identities=16% Similarity=0.171 Sum_probs=56.3
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCc
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKKK 275 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 275 (1349)
...+.++|.+|+|||+||.++++....+ -..+++++ ..++...+-.... . ....... +.+.+. +.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~-g~~v~~it------~~~l~~~l~~~~~-~--~~~~~~~----~l~~l~-~~ 163 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLR-GKSVLIIT------VADIMSAMKDTFS-N--SETSEEQ----LLNDLS-NV 163 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEE------HHHHHHHHHHHHh-h--ccccHHH----HHHHhc-cC
Confidence 3478999999999999999999875433 23455554 3344444433321 0 1111122 223344 34
Q ss_pred eEEEEeCCCCCChhhHHH--hhccCCC-CCCCcEEEEEecc
Q 000692 276 YLIVLDDVWSKSYDLWQA--LKSPFMV-GAPDSRIIVTTRS 313 (1349)
Q Consensus 276 ~LlVlDdv~~~~~~~~~~--~~~~l~~-~~~gs~ilvTtR~ 313 (1349)
=+||+||+......+|.. +...+-. ....-.+||||..
T Consensus 164 dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 164 DLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 588889996655455653 2111111 1123447777763
No 275
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.64 E-value=0.11 Score=60.66 Aligned_cols=88 Identities=15% Similarity=0.106 Sum_probs=50.9
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCC-CcccCceEEEEeccccc-HHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKS-VEDFDPKAWVCVSDDFD-VLRISKVILESITLSPCELKDLNSVQLKLKEALFK 273 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~-~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 273 (1349)
.++++++|++|+||||++..++.... .++...+..|+...... ..+.++...+.++.+.....+..++...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C-
Confidence 46999999999999999988876543 22233466666543211 12233333444444433334444555555442 2
Q ss_pred CceEEEEeCCCC
Q 000692 274 KKYLIVLDDVWS 285 (1349)
Q Consensus 274 ~~~LlVlDdv~~ 285 (1349)
..=+||+|..-.
T Consensus 299 ~~DlVlIDt~G~ 310 (424)
T PRK05703 299 DCDVILIDTAGR 310 (424)
T ss_pred CCCEEEEeCCCC
Confidence 356888997633
No 276
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.34 Score=49.42 Aligned_cols=190 Identities=16% Similarity=0.146 Sum_probs=101.0
Q ss_pred ccccc-hhhHHHHHHHHhccCC-------CCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHH
Q 000692 170 AVYGR-DEDKARVLKIVLKIDP-------NDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLR 241 (1349)
Q Consensus 170 ~~~Gr-~~~~~~l~~~l~~~~~-------~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 241 (1349)
.++|+ +..+.+|.+.+.-+-. -+-.+++-|.++|++|.|||-||++|++.. .+-|+.++...-
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht------~c~firvsgsel--- 217 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT------DCTFIRVSGSEL--- 217 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc------ceEEEEechHHH---
Confidence 35554 6666666665543211 133567889999999999999999999863 244566665421
Q ss_pred HHHHHHHHccCCCCCcCChHHHHHHHHHHh-cCCceEEEEeCCCCCC-----------hhhH---HHhhccCC--CCCCC
Q 000692 242 ISKVILESITLSPCELKDLNSVQLKLKEAL-FKKKYLIVLDDVWSKS-----------YDLW---QALKSPFM--VGAPD 304 (1349)
Q Consensus 242 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~-----------~~~~---~~~~~~l~--~~~~g 304 (1349)
+++-|.+ -....+++.-.. ..-+..|.+|.+++.. .+.- -++...+. ...+.
T Consensus 218 vqk~ige-----------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkn 286 (404)
T KOG0728|consen 218 VQKYIGE-----------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKN 286 (404)
T ss_pred HHHHhhh-----------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccc
Confidence 1111111 112222222222 2457888899885521 1111 11222232 13466
Q ss_pred cEEEEEecchhHHHh--hcC---CceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHH
Q 000692 305 SRIIVTTRSVDVALT--MGS---GGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARALGG 379 (1349)
Q Consensus 305 s~ilvTtR~~~v~~~--~~~---~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~ 379 (1349)
-+||.+|..-++.+. +.+ .+.++.++-+++.-.++++-+. +..+....-.++.+|+++.-..|.---++.+-|+
T Consensus 287 ikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs-rkmnl~rgi~l~kiaekm~gasgaevk~vcteag 365 (404)
T KOG0728|consen 287 IKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS-RKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAG 365 (404)
T ss_pred eEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh-hhhchhcccCHHHHHHhCCCCccchhhhhhhhhh
Confidence 788888876555432 222 2457788888877778877665 2222222234555555443333333334444444
Q ss_pred h
Q 000692 380 L 380 (1349)
Q Consensus 380 ~ 380 (1349)
.
T Consensus 366 m 366 (404)
T KOG0728|consen 366 M 366 (404)
T ss_pred H
Confidence 4
No 277
>PRK14974 cell division protein FtsY; Provisional
Probab=95.58 E-value=0.062 Score=60.27 Aligned_cols=90 Identities=18% Similarity=0.136 Sum_probs=49.4
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEeccccc--HHHHHHHHHHHccCCCC---CcCChHHH-HHHHH
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFD--VLRISKVILESITLSPC---ELKDLNSV-QLKLK 268 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~---~~~~~~~~-~~~l~ 268 (1349)
++.+|.++|+.|+||||++..++......++ .++.+.. +.+. ..+-++..++.++.+.. ...+.... .+.+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE 216 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence 4689999999999999988888765433324 2334432 2222 22344556666654321 11222222 23333
Q ss_pred HHhcCCceEEEEeCCCCC
Q 000692 269 EALFKKKYLIVLDDVWSK 286 (1349)
Q Consensus 269 ~~l~~~~~LlVlDdv~~~ 286 (1349)
.......=+|++|-+-..
T Consensus 217 ~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 217 HAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHhCCCCEEEEECCCcc
Confidence 222222338999998543
No 278
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.58 E-value=0.025 Score=53.84 Aligned_cols=44 Identities=32% Similarity=0.419 Sum_probs=33.8
Q ss_pred EEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCC
Q 000692 198 LIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLS 253 (1349)
Q Consensus 198 vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 253 (1349)
+|+|.|.+|+||||+|+.+++..... .| +.-.++++++++.+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~------~v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK------LV------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc------ee------eccHHHHHHHHHcCCC
Confidence 68999999999999999999876533 11 2335778888887754
No 279
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.57 E-value=0.012 Score=57.42 Aligned_cols=106 Identities=18% Similarity=0.166 Sum_probs=61.3
Q ss_pred ccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCc-c-cCceEEEEecccccHHHHHHHHHHH
Q 000692 172 YGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVE-D-FDPKAWVCVSDDFDVLRISKVILES 249 (1349)
Q Consensus 172 ~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~-~-f~~~~wv~~~~~~~~~~~~~~i~~~ 249 (1349)
||+-..++++.+.+..-.. ....|.|+|..|+||+++|+.++...... . |..+ .+.... .++
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~~~------~~~--- 64 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCASLP------AEL--- 64 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHCTC------HHH---
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhhCc------HHH---
Confidence 4666666666666654321 23467899999999999999988764432 1 3221 111110 111
Q ss_pred ccCCCCCcCChHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHHhhccCCC-CCCCcEEEEEecc
Q 000692 250 ITLSPCELKDLNSVQLKLKEALFKKKYLIVLDDVWSKSYDLWQALKSPFMV-GAPDSRIIVTTRS 313 (1349)
Q Consensus 250 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~-~~~gs~ilvTtR~ 313 (1349)
+.+ .+.--++++|+..-+.+....+...+.. .....|+|.||+.
T Consensus 65 -----------------l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 65 -----------------LEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp -----------------HHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred -----------------HHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 111 2555688999976655555556555542 2567899999985
No 280
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.57 E-value=0.049 Score=61.16 Aligned_cols=59 Identities=20% Similarity=0.178 Sum_probs=43.8
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcCCCC----cc-cCceEEEEecccccHHHHHHHHHHHccCC
Q 000692 194 SSFRLIPIVGMGGIGKTTLAREVYNDKSV----ED-FDPKAWVCVSDDFDVLRISKVILESITLS 253 (1349)
Q Consensus 194 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~----~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 253 (1349)
...+++-|+|.+|+|||+|+.+++-.... .+ -..++||+....|+++++. ++++.++..
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~-~ia~~~g~d 187 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIV-PIAERFGMD 187 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHH-HHHHHcCCC
Confidence 45678899999999999999988643321 12 3578999999988888765 466666543
No 281
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.57 E-value=0.033 Score=56.34 Aligned_cols=40 Identities=28% Similarity=0.384 Sum_probs=29.4
Q ss_pred EEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEeccccc
Q 000692 198 LIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFD 238 (1349)
Q Consensus 198 vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~ 238 (1349)
++.|+|.+|+||||+|..++...... -..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK-GGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc-CCEEEEEECCcchH
Confidence 36899999999999999997764322 34577777765543
No 282
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.57 E-value=0.035 Score=61.35 Aligned_cols=87 Identities=20% Similarity=0.182 Sum_probs=48.8
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCCCCc-ccCceEEEEecccc-cHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhc
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDKSVE-DFDPKAWVCVSDDF-DVLRISKVILESITLSPCELKDLNSVQLKLKEALF 272 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~-~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 272 (1349)
..++++|+|+.|+||||++..++.....+ +-..+..|+..... ...+.+....+.++.+.....+..++...+.+. .
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~-~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL-R 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-c
Confidence 45799999999999999999988765433 21245555544321 122233333444443333334444444444433 3
Q ss_pred CCceEEEEeCC
Q 000692 273 KKKYLIVLDDV 283 (1349)
Q Consensus 273 ~~~~LlVlDdv 283 (1349)
+ .=+|++|.+
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 3 457777764
No 283
>PRK06696 uridine kinase; Validated
Probab=95.56 E-value=0.016 Score=61.79 Aligned_cols=44 Identities=23% Similarity=0.278 Sum_probs=35.5
Q ss_pred chhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCC
Q 000692 174 RDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 174 r~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
|++-+++|.+.+.... .....+|+|.|.+|+||||+|+.++...
T Consensus 3 ~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 3 RKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred HHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 5667788888886532 2457899999999999999999998764
No 284
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.56 E-value=0.17 Score=49.85 Aligned_cols=125 Identities=16% Similarity=0.269 Sum_probs=71.2
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEe---------------------cccc-----------------
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCV---------------------SDDF----------------- 237 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~---------------------~~~~----------------- 237 (1349)
...+.|+|..|.||||+.+.+|...+.. ...+|+.- -+++
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~pt--~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~ 105 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERPT--RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLR 105 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcCC--CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhh
Confidence 3589999999999999999999865422 22333311 0000
Q ss_pred ----cHHHHHH---HHHHHccCCC------CCcCChHHHHHHHHHHhcCCceEEEEeCCCC--CChhhHHHhhccCCCCC
Q 000692 238 ----DVLRISK---VILESITLSP------CELKDLNSVQLKLKEALFKKKYLIVLDDVWS--KSYDLWQALKSPFMVGA 302 (1349)
Q Consensus 238 ----~~~~~~~---~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~~~~~~~l~~~~ 302 (1349)
...++.+ ..++..+... .+...-++..-.+.+.+-+++-+++=|.-.. +..-.|+.+.-.-.-..
T Consensus 106 v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr 185 (223)
T COG2884 106 VIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR 185 (223)
T ss_pred ccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh
Confidence 1122222 2223323221 1222233333456777788999999996522 11234544322222234
Q ss_pred CCcEEEEEecchhHHHhhcC
Q 000692 303 PDSRIIVTTRSVDVALTMGS 322 (1349)
Q Consensus 303 ~gs~ilvTtR~~~v~~~~~~ 322 (1349)
.|..||++|.+..+.+.+..
T Consensus 186 ~GtTVl~ATHd~~lv~~~~~ 205 (223)
T COG2884 186 LGTTVLMATHDLELVNRMRH 205 (223)
T ss_pred cCcEEEEEeccHHHHHhccC
Confidence 69999999999998877643
No 285
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.53 E-value=0.031 Score=58.04 Aligned_cols=108 Identities=13% Similarity=0.165 Sum_probs=55.4
Q ss_pred EEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHH-h----
Q 000692 197 RLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEA-L---- 271 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l---- 271 (1349)
+++.|.|.+|.||||++..+.......+ ..+.+......-..++..+ .+.. ...+.......... .
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g--~~v~~~apT~~Aa~~L~~~----~~~~---a~Ti~~~l~~~~~~~~~~~~ 89 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAG--KRVIGLAPTNKAAKELREK----TGIE---AQTIHSFLYRIPNGDDEGRP 89 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT----EEEEESSHHHHHHHHHH----HTS----EEEHHHHTTEECCEECCSSC
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCC--CeEEEECCcHHHHHHHHHh----hCcc---hhhHHHHHhcCCcccccccc
Confidence 5888999999999999999876544332 2333333333333333322 2211 11111100000000 0
Q ss_pred -cCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecchh
Q 000692 272 -FKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRSVD 315 (1349)
Q Consensus 272 -~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~~ 315 (1349)
..++-+||+|++.-.+...+..+...... .|.++|+.--..+
T Consensus 90 ~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 90 ELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp C-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred cCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 13446999999976666667777666553 5788888765443
No 286
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.52 E-value=0.047 Score=58.98 Aligned_cols=90 Identities=22% Similarity=0.166 Sum_probs=58.9
Q ss_pred CCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHH-ccC----CCCCcCChHHHHHH
Q 000692 192 DDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILES-ITL----SPCELKDLNSVQLK 266 (1349)
Q Consensus 192 ~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~~----~~~~~~~~~~~~~~ 266 (1349)
+-+..+++=|+|+.|.||||+|.+++...... -..++|++....++++.+. +++.. +.. +........+.++.
T Consensus 56 Gl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~-g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~v~~~~~~e~q~~i~~~ 133 (279)
T COG0468 56 GLPRGRITEIYGPESSGKTTLALQLVANAQKP-GGKAAFIDTEHALDPERAK-QLGVDLLDNLLVSQPDTGEQQLEIAEK 133 (279)
T ss_pred CcccceEEEEecCCCcchhhHHHHHHHHhhcC-CCeEEEEeCCCCCCHHHHH-HHHHhhhcceeEecCCCHHHHHHHHHH
Confidence 34567899999999999999999988764432 4578999999988887664 33333 211 11122222333344
Q ss_pred HHHHhcCCceEEEEeCC
Q 000692 267 LKEALFKKKYLIVLDDV 283 (1349)
Q Consensus 267 l~~~l~~~~~LlVlDdv 283 (1349)
+......+--|+|+|.+
T Consensus 134 ~~~~~~~~i~LvVVDSv 150 (279)
T COG0468 134 LARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHHhccCCCCEEEEecC
Confidence 44444444679999998
No 287
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.48 E-value=0.0075 Score=36.83 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.0
Q ss_pred cccEEEeccccccccCccccCC
Q 000692 582 KLRVLSLRRYYITEVPISIGCL 603 (1349)
Q Consensus 582 ~Lr~L~L~~~~i~~lp~~i~~L 603 (1349)
+|++|||++|+++.+|.+|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999888764
No 288
>PRK13695 putative NTPase; Provisional
Probab=95.48 E-value=0.018 Score=58.78 Aligned_cols=24 Identities=38% Similarity=0.422 Sum_probs=20.5
Q ss_pred EEEEEccCCChHHHHHHHHHcCCC
Q 000692 198 LIPIVGMGGIGKTTLAREVYNDKS 221 (1349)
Q Consensus 198 vv~i~G~gGiGKTtLa~~~~~~~~ 221 (1349)
.|+|+|.+|+|||||++.+++...
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999877643
No 289
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.48 E-value=0.14 Score=51.48 Aligned_cols=80 Identities=14% Similarity=0.192 Sum_probs=44.1
Q ss_pred EEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCc---CChHHHHHHHHHHhcCC
Q 000692 198 LIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCEL---KDLNSVQLKLKEALFKK 274 (1349)
Q Consensus 198 vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~~l~~~ 274 (1349)
++.|.|.+|+||||+|..++..... .++++.-.... ..+..+.|..+....+..- ....++...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~----~~~~iat~~~~-~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~- 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL----QVLYIATAQPF-DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP- 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC----CcEeCcCCCCC-hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC-
Confidence 6899999999999999999875321 23344333333 3345555544433222211 1122333344433332
Q ss_pred ceEEEEeCC
Q 000692 275 KYLIVLDDV 283 (1349)
Q Consensus 275 ~~LlVlDdv 283 (1349)
.-++++|.+
T Consensus 77 ~~~VlID~L 85 (170)
T PRK05800 77 GRCVLVDCL 85 (170)
T ss_pred CCEEEehhH
Confidence 337888987
No 290
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.054 Score=66.27 Aligned_cols=153 Identities=20% Similarity=0.226 Sum_probs=86.8
Q ss_pred ccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-c----CceEEEEecccccHHHHHH
Q 000692 170 AVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-F----DPKAWVCVSDDFDVLRISK 244 (1349)
Q Consensus 170 ~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f----~~~~wv~~~~~~~~~~~~~ 244 (1349)
.++||++|++++++.|.....++ -.++|-+|+|||++|.-++.+.-... . +..++.- ++.
T Consensus 171 PvIGRd~EI~r~iqIL~RR~KNN------PvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL-----D~g---- 235 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTKNN------PVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL-----DLG---- 235 (786)
T ss_pred CCcChHHHHHHHHHHHhccCCCC------CeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe-----cHH----
Confidence 48999999999999998765421 15789999999999888777642221 1 1121110 111
Q ss_pred HHHHHccCCCCCcCChHHHHHHHHHHh-cCCceEEEEeCCCCC---------ChhhHHHhhccCCCCCCCcEEE-EEecc
Q 000692 245 VILESITLSPCELKDLNSVQLKLKEAL-FKKKYLIVLDDVWSK---------SYDLWQALKSPFMVGAPDSRII-VTTRS 313 (1349)
Q Consensus 245 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~---------~~~~~~~~~~~l~~~~~gs~il-vTtR~ 313 (1349)
.+.....-..+.++....+.+.+ +.++..+++|.+... ..+.-..+...+..+ . -++| .||-+
T Consensus 236 ----~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG-e-L~~IGATT~~ 309 (786)
T COG0542 236 ----SLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG-E-LRCIGATTLD 309 (786)
T ss_pred ----HHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC-C-eEEEEeccHH
Confidence 11111222345555555544444 345899999998541 122222233333222 2 3444 45543
Q ss_pred hhHHHhh-------cCCceEeCCCCChhhHHHHHHHHH
Q 000692 314 VDVALTM-------GSGGYCELKLLSDDDCWSVFVKHA 344 (1349)
Q Consensus 314 ~~v~~~~-------~~~~~~~l~~L~~~~~~~l~~~~~ 344 (1349)
+-...+ .-.+.+.++..+.+++..+++...
T Consensus 310 -EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 310 -EYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred -HHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 222222 223578899999999999987544
No 291
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.46 E-value=0.01 Score=56.41 Aligned_cols=30 Identities=30% Similarity=0.405 Sum_probs=24.7
Q ss_pred EEEEEEccCCChHHHHHHHHHcCCCCcccC
Q 000692 197 RLIPIVGMGGIGKTTLAREVYNDKSVEDFD 226 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~ 226 (1349)
--|+|.|++|+||||+++.+++..+.++|.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~k 35 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYK 35 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCce
Confidence 468999999999999999999876555453
No 292
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.45 E-value=0.13 Score=61.40 Aligned_cols=60 Identities=18% Similarity=0.310 Sum_probs=44.3
Q ss_pred ccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEe
Q 000692 170 AVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCV 233 (1349)
Q Consensus 170 ~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~ 233 (1349)
.++.-.+-++++..||...-. +....+++.+.|++|+||||.++.+++... |+.+-|.+.
T Consensus 20 eLavhkkKv~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~elg---~~v~Ew~np 79 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAKELG---FEVQEWINP 79 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHHHhC---CeeEEecCC
Confidence 345556678888899876433 333467999999999999999999988643 667777643
No 293
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.25 Score=57.46 Aligned_cols=156 Identities=17% Similarity=0.228 Sum_probs=89.9
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCC
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKK 274 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 274 (1349)
.+.-|.+||++|.|||-||++|++..... | +++..+ +++..-+ + .+.....+.+++.-..-
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag~N-F-----isVKGP----ELlNkYV---G------ESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEAGAN-F-----ISVKGP----ELLNKYV---G------ESERAVRQVFQRARASA 604 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhccCc-e-----EeecCH----HHHHHHh---h------hHHHHHHHHHHHhhcCC
Confidence 45678999999999999999999986543 3 444433 2222111 1 11122223334444568
Q ss_pred ceEEEEeCCCCC-----ChhhH------HHhhccCCC--CCCCcEEEEEecchhHHHh--hcCC---ceEeCCCCChhhH
Q 000692 275 KYLIVLDDVWSK-----SYDLW------QALKSPFMV--GAPDSRIIVTTRSVDVALT--MGSG---GYCELKLLSDDDC 336 (1349)
Q Consensus 275 ~~LlVlDdv~~~-----~~~~~------~~~~~~l~~--~~~gs~ilvTtR~~~v~~~--~~~~---~~~~l~~L~~~~~ 336 (1349)
+++|.||.++.- +...| .++...+-. .-.|.-||-.|..+++.+. +.+. ....+..-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 999999998431 11112 233333322 2356677777766555432 2222 3677888888999
Q ss_pred HHHHHHHHhcCCC-CCCchhHHHHHHHHHHHhCCCh
Q 000692 337 WSVFVKHAFESRD-AGTHENLESIRQKVVEKCKGLP 371 (1349)
Q Consensus 337 ~~l~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~g~P 371 (1349)
.++++........ ...+..++++++ ..+|.|.-
T Consensus 685 ~~ILK~~tkn~k~pl~~dVdl~eia~--~~~c~gft 718 (802)
T KOG0733|consen 685 VAILKTITKNTKPPLSSDVDLDEIAR--NTKCEGFT 718 (802)
T ss_pred HHHHHHHhccCCCCCCcccCHHHHhh--cccccCCc
Confidence 9999888753222 233445666655 34566654
No 294
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.43 E-value=0.05 Score=61.57 Aligned_cols=57 Identities=16% Similarity=0.244 Sum_probs=42.0
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcCCCCcc-----cCceEEEEecccccHHHHHHHHHHHcc
Q 000692 194 SSFRLIPIVGMGGIGKTTLAREVYNDKSVED-----FDPKAWVCVSDDFDVLRISKVILESIT 251 (1349)
Q Consensus 194 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~~i~~~l~ 251 (1349)
....++-|+|.+|+|||++|.+++....... -..++||+..+.++..++. ++++.++
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g 161 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALG 161 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcC
Confidence 3567999999999999999999876532211 2478999998888877664 4445544
No 295
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.39 E-value=0.071 Score=54.41 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=20.7
Q ss_pred EEEEEccCCChHHHHHHHHHcCCC
Q 000692 198 LIPIVGMGGIGKTTLAREVYNDKS 221 (1349)
Q Consensus 198 vv~i~G~gGiGKTtLa~~~~~~~~ 221 (1349)
++.++|++|+||||++..++....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~ 25 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999887543
No 296
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.35 E-value=0.099 Score=59.88 Aligned_cols=88 Identities=13% Similarity=0.211 Sum_probs=54.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCCCCc---ccCceEEEEeccccc--HHHHHHHHHHHccCCCCCcCChHHHHHHHHH
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDKSVE---DFDPKAWVCVSDDFD--VLRISKVILESITLSPCELKDLNSVQLKLKE 269 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~---~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 269 (1349)
..++|.++|..|+||||.+..++...... .-..+..+++. .+. ..+-++..++.++.+-......+++...+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 35799999999999999999988765322 11234445444 322 2233555666666543344445555555544
Q ss_pred HhcCCceEEEEeCCCC
Q 000692 270 ALFKKKYLIVLDDVWS 285 (1349)
Q Consensus 270 ~l~~~~~LlVlDdv~~ 285 (1349)
. .+.-+|++|.+..
T Consensus 252 ~--~~~DlVLIDTaGr 265 (388)
T PRK12723 252 S--KDFDLVLVDTIGK 265 (388)
T ss_pred h--CCCCEEEEcCCCC
Confidence 3 4567889999854
No 297
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.33 E-value=0.48 Score=52.43 Aligned_cols=63 Identities=14% Similarity=0.133 Sum_probs=41.5
Q ss_pred CCccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHH
Q 000692 168 EPAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRI 242 (1349)
Q Consensus 168 ~~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 242 (1349)
++.++=..+....+...+... +.|.|.|.+|+||||+|+.++...... .+.|.++...+..++
T Consensus 44 d~~y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~~l~~~----~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 44 DPAYLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAARLNWP----CVRVNLDSHVSRIDL 106 (327)
T ss_pred CCCccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHHHHCCC----eEEEEecCCCChhhc
Confidence 344555555666677777432 468999999999999999998865422 335555555444333
No 298
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.31 E-value=0.063 Score=62.77 Aligned_cols=88 Identities=18% Similarity=0.107 Sum_probs=48.5
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCCCCcc-cCceEEEEecccc-cHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhc
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDKSVED-FDPKAWVCVSDDF-DVLRISKVILESITLSPCELKDLNSVQLKLKEALF 272 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 272 (1349)
..++|+|+|.+|+||||++..++.....+. ...+..++..... ...+.++...+.++.......+..++...+.+ +.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~-l~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER-LR 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH-hc
Confidence 457999999999999999998876543222 2345555442211 11222333333343322233334444444443 33
Q ss_pred CCceEEEEeCCC
Q 000692 273 KKKYLIVLDDVW 284 (1349)
Q Consensus 273 ~~~~LlVlDdv~ 284 (1349)
..=+|++|..-
T Consensus 428 -~~DLVLIDTaG 438 (559)
T PRK12727 428 -DYKLVLIDTAG 438 (559)
T ss_pred -cCCEEEecCCC
Confidence 35588888874
No 299
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.30 E-value=0.036 Score=60.05 Aligned_cols=134 Identities=16% Similarity=0.186 Sum_probs=71.3
Q ss_pred cccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCC-CCcc-cCceEEE----Eeccc--------
Q 000692 171 VYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDK-SVED-FDPKAWV----CVSDD-------- 236 (1349)
Q Consensus 171 ~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~-~~~~-f~~~~wv----~~~~~-------- 236 (1349)
+-+|..+..--.++|+.+ ....|.+.|.+|.|||-||.+..-.. -.++ |..++-. .+++.
T Consensus 226 i~prn~eQ~~ALdlLld~------dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 226 IRPRNAEQRVALDLLLDD------DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred cCcccHHHHHHHHHhcCC------CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCch
Confidence 445677777777788643 56899999999999999997754322 1122 4433211 12211
Q ss_pred -ccHHHHHHHHH---HHccCCCCCcCChHHHHHHH---------HHHhcCC---ceEEEEeCCCCCChhhHHHhhccCCC
Q 000692 237 -FDVLRISKVIL---ESITLSPCELKDLNSVQLKL---------KEALFKK---KYLIVLDDVWSKSYDLWQALKSPFMV 300 (1349)
Q Consensus 237 -~~~~~~~~~i~---~~l~~~~~~~~~~~~~~~~l---------~~~l~~~---~~LlVlDdv~~~~~~~~~~~~~~l~~ 300 (1349)
..+.-=.+.|. +.+..... .....+...+ ..+.+++ +-+||+|.+.+-...+...+.. .
T Consensus 300 EeKm~PWmq~i~DnLE~L~~~~~--~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTilt---R 374 (436)
T COG1875 300 EEKMGPWMQAIFDNLEVLFSPNE--PGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTILT---R 374 (436)
T ss_pred hhhccchHHHHHhHHHHHhcccc--cchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHHH---h
Confidence 11111112222 22221111 0111111111 1223443 5699999998766655555543 3
Q ss_pred CCCCcEEEEEecchh
Q 000692 301 GAPDSRIIVTTRSVD 315 (1349)
Q Consensus 301 ~~~gs~ilvTtR~~~ 315 (1349)
.+.|+||+.|--..+
T Consensus 375 ~G~GsKIVl~gd~aQ 389 (436)
T COG1875 375 AGEGSKIVLTGDPAQ 389 (436)
T ss_pred ccCCCEEEEcCCHHH
Confidence 468999999876443
No 300
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.29 E-value=0.066 Score=53.89 Aligned_cols=117 Identities=15% Similarity=0.121 Sum_probs=62.6
Q ss_pred EEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEeccc--ccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCC
Q 000692 197 RLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDD--FDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKK 274 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 274 (1349)
.+++|.|..|.|||||.+.++..... ....+++.-... .+..+..+ +.++... +...-+...-.+.+.+-.+
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~-qLS~G~~qrl~laral~~~ 100 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYKP--DSGEILVDGKEVSFASPRDARR---AGIAMVY-QLSVGERQMVEIARALARN 100 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEECCcCCHHHHHh---cCeEEEE-ecCHHHHHHHHHHHHHhcC
Confidence 58999999999999999999875432 233444432111 11111111 1111111 1122223333455666778
Q ss_pred ceEEEEeCCCCC-ChhhHHHhhccCCCC-CCCcEEEEEecchhHHHh
Q 000692 275 KYLIVLDDVWSK-SYDLWQALKSPFMVG-APDSRIIVTTRSVDVALT 319 (1349)
Q Consensus 275 ~~LlVlDdv~~~-~~~~~~~~~~~l~~~-~~gs~ilvTtR~~~v~~~ 319 (1349)
+-++++|+.... +......+...+... ..|..||++|.+......
T Consensus 101 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 101 ARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 889999997442 222233333333221 246778888888765443
No 301
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.26 E-value=0.094 Score=51.74 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=20.5
Q ss_pred EEEEEccCCChHHHHHHHHHcCC
Q 000692 198 LIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 198 vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
+|.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999988764
No 302
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.24 E-value=0.047 Score=59.07 Aligned_cols=81 Identities=20% Similarity=0.225 Sum_probs=48.9
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCc
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKKK 275 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 275 (1349)
..-+.++|.+|+|||.||.++.++.. +.--.+.++++ .++..++...... .....++.+.+ .+-
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f~~~------~el~~~Lk~~~~~--------~~~~~~l~~~l-~~~ 168 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFITA------PDLLSKLKAAFDE--------GRLEEKLLREL-KKV 168 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEEEH------HHHHHHHHHHHhc--------CchHHHHHHHh-hcC
Confidence 45689999999999999999999876 33234556653 3444455444332 11122222222 233
Q ss_pred eEEEEeCCCCCChhhHH
Q 000692 276 YLIVLDDVWSKSYDLWQ 292 (1349)
Q Consensus 276 ~LlVlDdv~~~~~~~~~ 292 (1349)
=|||+||+-......|.
T Consensus 169 dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 169 DLLIIDDIGYEPFSQEE 185 (254)
T ss_pred CEEEEecccCccCCHHH
Confidence 48999999665444454
No 303
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.21 E-value=0.12 Score=57.82 Aligned_cols=90 Identities=12% Similarity=0.120 Sum_probs=56.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEeccccc-HHHHHHHHHHHccCCCCCcCChHHHHHHHHHHh-c
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFD-VLRISKVILESITLSPCELKDLNSVQLKLKEAL-F 272 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~ 272 (1349)
..++++++|+.|+||||++..++.....++ ..+.+|++..... ..+-++..++.++.+.....+..++...+...- .
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g-~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~ 283 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN-RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYV 283 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhc
Confidence 468999999999999999999887543222 3455666543222 234555566666554333445556555554432 1
Q ss_pred CCceEEEEeCCCC
Q 000692 273 KKKYLIVLDDVWS 285 (1349)
Q Consensus 273 ~~~~LlVlDdv~~ 285 (1349)
+..=+|++|-+-.
T Consensus 284 ~~~D~VLIDTAGr 296 (407)
T PRK12726 284 NCVDHILIDTVGR 296 (407)
T ss_pred CCCCEEEEECCCC
Confidence 4457888898854
No 304
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.20 E-value=0.024 Score=56.19 Aligned_cols=86 Identities=24% Similarity=0.301 Sum_probs=67.9
Q ss_pred hccCCCcccEEEeccccccccCccccC-CCccceEEecCCCCccccc--ccccCCCCcEEEecCccCCCcCch----hhh
Q 000692 576 LLPKFKKLRVLSLRRYYITEVPISIGC-LRHLRYLNFSDTKIKCLPE--SVTSLLNLEILILRDCLHLLKLPS----SIG 648 (1349)
Q Consensus 576 ~~~~l~~Lr~L~L~~~~i~~lp~~i~~-L~~Lr~L~Ls~~~i~~lp~--~i~~L~~L~~L~l~~~~~~~~lp~----~i~ 648 (1349)
.|..++.|.+|.|.+|+|+.|-..+.. +.+|..|.|.+|+|.++-+ -+..+++|++|.+-+| .+...+. -+.
T Consensus 59 ~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N-pv~~k~~YR~yvl~ 137 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN-PVEHKKNYRLYVLY 137 (233)
T ss_pred cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC-chhcccCceeEEEE
Confidence 367889999999999999999656655 4679999999999987743 3677889999999887 3444332 378
Q ss_pred ccccccEEEecCCC
Q 000692 649 NLVKLLHLDIEGAN 662 (1349)
Q Consensus 649 ~L~~L~~L~l~~~~ 662 (1349)
++++|+.||..+..
T Consensus 138 klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 138 KLPSLRTLDFQKVT 151 (233)
T ss_pred ecCcceEeehhhhh
Confidence 89999999987653
No 305
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.19 E-value=0.016 Score=67.78 Aligned_cols=51 Identities=18% Similarity=0.280 Sum_probs=40.7
Q ss_pred ccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCC
Q 000692 170 AVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 170 ~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
.++|.++.+++|++.+...........+++.++|++|+||||||+.+++-.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 489999999999999943222123455799999999999999999998754
No 306
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.19 E-value=0.089 Score=54.79 Aligned_cols=80 Identities=20% Similarity=0.178 Sum_probs=45.5
Q ss_pred EEEEEccCCChHHHHHHHHHcCCCCcccC---ceEEEEecccccHHHHHHHHHHHc----cCCCCCcCChHHHHHHHHHH
Q 000692 198 LIPIVGMGGIGKTTLAREVYNDKSVEDFD---PKAWVCVSDDFDVLRISKVILESI----TLSPCELKDLNSVQLKLKEA 270 (1349)
Q Consensus 198 vv~i~G~gGiGKTtLa~~~~~~~~~~~f~---~~~wv~~~~~~~~~~~~~~i~~~l----~~~~~~~~~~~~~~~~l~~~ 270 (1349)
||+|.|.+|+||||+|+++.......+.. ....+.............. -... .......-+.+.+.+.+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~~L 79 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLKAL 79 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHHHH
Confidence 69999999999999999998876544333 2333333332222222221 1111 11122456677777777766
Q ss_pred hcCCceEE
Q 000692 271 LFKKKYLI 278 (1349)
Q Consensus 271 l~~~~~Ll 278 (1349)
.+++..-+
T Consensus 80 ~~g~~i~~ 87 (194)
T PF00485_consen 80 KNGGSIEI 87 (194)
T ss_dssp HTTSCEEE
T ss_pred hCCCcccc
Confidence 66666444
No 307
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.45 Score=58.12 Aligned_cols=181 Identities=17% Similarity=0.126 Sum_probs=99.9
Q ss_pred Cccccchhh---HHHHHHHHhccCC---CCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHH
Q 000692 169 PAVYGRDED---KARVLKIVLKIDP---NDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRI 242 (1349)
Q Consensus 169 ~~~~Gr~~~---~~~l~~~l~~~~~---~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 242 (1349)
..+.|-++. +.+++++|..++. -+..-++-|.++|++|.|||-||++++....+- |++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP------F~svSGS------ 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP------FFSVSGS------ 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc------eeeechH------
Confidence 357777654 5555556544321 133457889999999999999999999987654 2333322
Q ss_pred HHHHHHHccCCCCCcCChHHHHHHHHH-HhcCCceEEEEeCCCCCC---------------hhhHHHhhccCCCCC--CC
Q 000692 243 SKVILESITLSPCELKDLNSVQLKLKE-ALFKKKYLIVLDDVWSKS---------------YDLWQALKSPFMVGA--PD 304 (1349)
Q Consensus 243 ~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~---------------~~~~~~~~~~l~~~~--~g 304 (1349)
+.++.+.... ...++.+.. .-.+.+..|.+|+++... ...+.++........ .+
T Consensus 379 --EFvE~~~g~~------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 379 --EFVEMFVGVG------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred --HHHHHhcccc------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 1111111110 122222222 224567888888873211 011233333322222 22
Q ss_pred cEEEEEecchhHHHh--hcC---CceEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHH
Q 000692 305 SRIIVTTRSVDVALT--MGS---GGYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLA 373 (1349)
Q Consensus 305 s~ilvTtR~~~v~~~--~~~---~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 373 (1349)
.-++-+|...++.+. +.. ++.+.++.-+.....++|..|+...... .+..++++ |+...-|.+=|
T Consensus 451 vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~---~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD---DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred EEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC---cchhhHHH-HHhcCCCCcHH
Confidence 334445655555432 222 3468888888999999999988443332 23344545 78888777744
No 308
>PRK00625 shikimate kinase; Provisional
Probab=95.17 E-value=0.082 Score=53.35 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.1
Q ss_pred EEEEEccCCChHHHHHHHHHcCCC
Q 000692 198 LIPIVGMGGIGKTTLAREVYNDKS 221 (1349)
Q Consensus 198 vv~i~G~gGiGKTtLa~~~~~~~~ 221 (1349)
.|.++||+|+||||+|+.+++...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999988654
No 309
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.17 E-value=0.077 Score=53.28 Aligned_cols=131 Identities=20% Similarity=0.147 Sum_probs=65.9
Q ss_pred cccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHc
Q 000692 171 VYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESI 250 (1349)
Q Consensus 171 ~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 250 (1349)
++|....+.++.+.+..... ...-|.|+|..|+||+.+|+.+++....+ -..-+-|+++.- +.+.+-..+...-
T Consensus 1 liG~s~~m~~~~~~~~~~a~----~~~pVlI~GE~GtGK~~lA~~IH~~s~r~-~~pfi~vnc~~~-~~~~~e~~LFG~~ 74 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----SDLPVLITGETGTGKELLARAIHNNSPRK-NGPFISVNCAAL-PEELLESELFGHE 74 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----STS-EEEECSTTSSHHHHHHHHHHCSTTT-TS-EEEEETTTS--HHHHHHHHHEBC
T ss_pred CEeCCHHHHHHHHHHHHHhC----CCCCEEEEcCCCCcHHHHHHHHHHhhhcc-cCCeEEEehhhh-hcchhhhhhhccc
Confidence 46777888888887765432 22456799999999999999998854322 223344555543 2222322333221
Q ss_pred cCCCCCc-CChHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHHhhccCC------CC-----CCCcEEEEEecc
Q 000692 251 TLSPCEL-KDLNSVQLKLKEALFKKKYLIVLDDVWSKSYDLWQALKSPFM------VG-----APDSRIIVTTRS 313 (1349)
Q Consensus 251 ~~~~~~~-~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~------~~-----~~gs~ilvTtR~ 313 (1349)
....... .... ..+. +...--|+||++..-....-..+...+. .+ ....|||.||..
T Consensus 75 ~~~~~~~~~~~~---G~l~---~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 75 KGAFTGARSDKK---GLLE---QANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp SSSSTTTSSEBE---HHHH---HTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred cccccccccccC---Ccee---eccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 1110000 1011 1121 2355678999996654433333332221 11 125788888874
No 310
>PRK08233 hypothetical protein; Provisional
Probab=95.12 E-value=0.059 Score=55.68 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=23.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKS 221 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~ 221 (1349)
..+|+|.|.+|+||||+|..++....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 37999999999999999999987653
No 311
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.12 E-value=0.35 Score=48.99 Aligned_cols=124 Identities=18% Similarity=0.200 Sum_probs=69.9
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEec-------------------ccc-------------------
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVS-------------------DDF------------------- 237 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~-------------------~~~------------------- 237 (1349)
..|++|+|+.|+|||||.+-+..=.... ...+||.-. +.|
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE~~~--~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v 105 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLEEPD--SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV 105 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCcCCC--CceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH
Confidence 4699999999999999999875533221 344444321 111
Q ss_pred ------cHHHHHHHHHHHccCCCC------CcCChHHHHHHHHHHhcCCceEEEEeCCCCC-ChhhHHHhhccCCC-CCC
Q 000692 238 ------DVLRISKVILESITLSPC------ELKDLNSVQLKLKEALFKKKYLIVLDDVWSK-SYDLWQALKSPFMV-GAP 303 (1349)
Q Consensus 238 ------~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~~~~~l~~-~~~ 303 (1349)
..++...++++.++.... +...-++-.-.|.+.|.=++=++.+|...+. +++.-.++...... ...
T Consensus 106 ~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e 185 (240)
T COG1126 106 KKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 185 (240)
T ss_pred cCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc
Confidence 123334444444443321 1122223333567788888899999998653 22322333222221 245
Q ss_pred CcEEEEEecchhHHHhhc
Q 000692 304 DSRIIVTTRSVDVALTMG 321 (1349)
Q Consensus 304 gs~ilvTtR~~~v~~~~~ 321 (1349)
|-.+|+.|.....|....
T Consensus 186 GmTMivVTHEM~FAr~Va 203 (240)
T COG1126 186 GMTMIIVTHEMGFAREVA 203 (240)
T ss_pred CCeEEEEechhHHHHHhh
Confidence 777888888777766543
No 312
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.06 E-value=0.095 Score=53.61 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=23.4
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCCC
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDKS 221 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~~ 221 (1349)
...+|.|+|++|+||||+|+.++....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346999999999999999999987653
No 313
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.05 E-value=0.073 Score=60.65 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=22.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCC
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
...+++++|++|+||||+|.+++...
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999998753
No 314
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.05 E-value=0.06 Score=60.32 Aligned_cols=58 Identities=19% Similarity=0.174 Sum_probs=41.0
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcCCCC---cc--cCceEEEEecccccHHHHHHHHHHHccC
Q 000692 194 SSFRLIPIVGMGGIGKTTLAREVYNDKSV---ED--FDPKAWVCVSDDFDVLRISKVILESITL 252 (1349)
Q Consensus 194 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~---~~--f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 252 (1349)
....++.|+|.+|+||||+|..++..... .+ -..++|++....++..++ .++++.++.
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 45689999999999999999998753221 11 236799998887777664 445555543
No 315
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.03 E-value=0.19 Score=54.35 Aligned_cols=141 Identities=13% Similarity=0.158 Sum_probs=71.0
Q ss_pred EEEEEccCCChHHHHHHHHHcCCCC-----------cccCceEEEEeccccc-HHHHHHHHHHHccCCCC---------C
Q 000692 198 LIPIVGMGGIGKTTLAREVYNDKSV-----------EDFDPKAWVCVSDDFD-VLRISKVILESITLSPC---------E 256 (1349)
Q Consensus 198 vv~i~G~gGiGKTtLa~~~~~~~~~-----------~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~---------~ 256 (1349)
+..|+|++|+|||+||..++..... ..-..+++++...+.+ +.+-+..+...++.... .
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 5678999999999999998764221 1112345555444332 33333444443321100 0
Q ss_pred -------c---CChHHHHHHHHHHh-cCCceEEEEeCCCC------CChhhHHHhhccCCC--CCCCcEEEEEecchhHH
Q 000692 257 -------L---KDLNSVQLKLKEAL-FKKKYLIVLDDVWS------KSYDLWQALKSPFMV--GAPDSRIIVTTRSVDVA 317 (1349)
Q Consensus 257 -------~---~~~~~~~~~l~~~l-~~~~~LlVlDdv~~------~~~~~~~~~~~~l~~--~~~gs~ilvTtR~~~v~ 317 (1349)
. .........+.+.+ ..+.-+||+|-+-. .+......+...+.. ...|+.||+++...+..
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~ 162 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGS 162 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCccc
Confidence 0 01122233333333 45677999996521 222333333333321 23477888888754322
Q ss_pred Hh-------h-------c-CCceEeCCCCChhhHHH
Q 000692 318 LT-------M-------G-SGGYCELKLLSDDDCWS 338 (1349)
Q Consensus 318 ~~-------~-------~-~~~~~~l~~L~~~~~~~ 338 (1349)
.. . . ....+.+.+++++++.+
T Consensus 163 ~~~~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~ 198 (239)
T cd01125 163 AKDGDTQEAARGASALVDGARWVRALTRMTSEEAEK 198 (239)
T ss_pred ccCcccccccCcHHHHhcccceEEEEeeCCHHHHHh
Confidence 10 0 0 11256777777777666
No 316
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.01 E-value=0.084 Score=57.00 Aligned_cols=87 Identities=17% Similarity=0.131 Sum_probs=54.4
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCC------------------
Q 000692 194 SSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPC------------------ 255 (1349)
Q Consensus 194 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------------ 255 (1349)
+...++.|+|.+|+|||++|.+++...-. .-..++|++..+.+ .++.+++ ++++....
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~e~~~--~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVITTENTS--KSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEEcCCCH--HHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 45679999999999999999998654311 23468888886553 4444443 23322110
Q ss_pred --CcCChHHHHHHHHHHhcC-CceEEEEeCCC
Q 000692 256 --ELKDLNSVQLKLKEALFK-KKYLIVLDDVW 284 (1349)
Q Consensus 256 --~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~ 284 (1349)
...+.+++...+.+.+.. +.-++|+|.+-
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 112234556666666653 56689999974
No 317
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.01 E-value=0.12 Score=52.56 Aligned_cols=117 Identities=21% Similarity=0.233 Sum_probs=59.6
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecc--cccHHHHHHHHHHHccCCCCCc-----------CCh-H
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSD--DFDVLRISKVILESITLSPCEL-----------KDL-N 261 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~~-----------~~~-~ 261 (1349)
..+++|+|..|.|||||++.++..... ....+++.-.. ........ ..++.-.++. -+. +
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~----~~i~~~~q~~~~~~~tv~~~lLS~G~ 101 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLRP--TSGRVRLDGADISQWDPNELG----DHVGYLPQDDELFSGSIAENILSGGQ 101 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCC--CCCeEEECCEEcccCCHHHHH----hheEEECCCCccccCcHHHHCcCHHH
Confidence 358999999999999999999875432 22223322111 00111111 1111100000 111 1
Q ss_pred HHHHHHHHHhcCCceEEEEeCCCCC-ChhhHHHhhccCCC-CCCCcEEEEEecchhHHH
Q 000692 262 SVQLKLKEALFKKKYLIVLDDVWSK-SYDLWQALKSPFMV-GAPDSRIIVTTRSVDVAL 318 (1349)
Q Consensus 262 ~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~~~~~l~~-~~~gs~ilvTtR~~~v~~ 318 (1349)
...-.+.+.+..++=++++|+.... +......+...+.. ...|..||++|.+.....
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 2223355666677789999997542 22222233222221 123667888888876653
No 318
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.01 E-value=0.14 Score=54.25 Aligned_cols=125 Identities=17% Similarity=0.084 Sum_probs=73.4
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecc-----cccHHHHHHHHHHHccCCCC------CcCChHHHH
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSD-----DFDVLRISKVILESITLSPC------ELKDLNSVQ 264 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~ 264 (1349)
..+++|+|-.|.||||+++.+..=.... .+.+++.-.+ .....+-..++++.++.... ..-+-.+.+
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt--~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPT--SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCC--CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 4689999999999999999998754322 2222222111 22233445566666664432 111223333
Q ss_pred H-HHHHHhcCCceEEEEeCCCCCChh-hHHHhhccCC--CCCCCcEEEEEecchhHHHhhcC
Q 000692 265 L-KLKEALFKKKYLIVLDDVWSKSYD-LWQALKSPFM--VGAPDSRIIVTTRSVDVALTMGS 322 (1349)
Q Consensus 265 ~-~l~~~l~~~~~LlVlDdv~~~~~~-~~~~~~~~l~--~~~~gs~ilvTtR~~~v~~~~~~ 322 (1349)
+ .+.+.+.-++-++|.|..-+.-.. .-+++...+. ....|-..++.|-+-.++..+..
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 3 467788899999999997442111 1122222221 12357778999999888877654
No 319
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.3 Score=49.99 Aligned_cols=64 Identities=11% Similarity=0.075 Sum_probs=40.0
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCC-ChhhHHHhhccCCC-CCCCcEEEEEecchhHHHhhcCCceE
Q 000692 263 VQLKLKEALFKKKYLIVLDDVWSK-SYDLWQALKSPFMV-GAPDSRIIVTTRSVDVALTMGSGGYC 326 (1349)
Q Consensus 263 ~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~~~~~l~~-~~~gs~ilvTtR~~~v~~~~~~~~~~ 326 (1349)
...++.+.+-=++-+.|||..++- +.+..+.+...+.. ..+|+.+++.|..+++++...+..++
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 344555566667889999998653 23334333322211 23577889999999999887655543
No 320
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.00 E-value=0.16 Score=56.35 Aligned_cols=52 Identities=25% Similarity=0.260 Sum_probs=36.2
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHH
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILES 249 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 249 (1349)
..++.|.|.+|+||||++.+++.......-..++|++.... ..++.+.+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~--~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEP--VVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccC--HHHHHHHHHHH
Confidence 45889999999999999999877643221346788887664 34555555443
No 321
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.96 E-value=0.035 Score=56.15 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=21.9
Q ss_pred EEEEEccCCChHHHHHHHHHcCCCC
Q 000692 198 LIPIVGMGGIGKTTLAREVYNDKSV 222 (1349)
Q Consensus 198 vv~i~G~gGiGKTtLa~~~~~~~~~ 222 (1349)
.|.|.|.+|+||||+|+.+++....
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i 26 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL 26 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999998543
No 322
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.94 E-value=0.47 Score=47.63 Aligned_cols=78 Identities=18% Similarity=0.273 Sum_probs=43.5
Q ss_pred EEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCc---CChHHHHHHHHHHhcCCc
Q 000692 199 IPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCEL---KDLNSVQLKLKEALFKKK 275 (1349)
Q Consensus 199 v~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~~l~~~~ 275 (1349)
+.|.|..|+|||++|.+++... ...++++.-.+.++. +..+.|.......+... ....++.+.+.+. . +.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~----~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~-~-~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL----GGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKEL-D-PG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc----CCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc-C-CC
Confidence 5789999999999999987651 235666665555543 34444443322222211 1122333333221 2 34
Q ss_pred eEEEEeCC
Q 000692 276 YLIVLDDV 283 (1349)
Q Consensus 276 ~LlVlDdv 283 (1349)
-.+++|.+
T Consensus 75 ~~VLIDcl 82 (169)
T cd00544 75 DVVLIDCL 82 (169)
T ss_pred CEEEEEcH
Confidence 47999987
No 323
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.93 E-value=0.13 Score=58.02 Aligned_cols=59 Identities=19% Similarity=0.189 Sum_probs=43.4
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcCCCC---c-c-cCceEEEEecccccHHHHHHHHHHHccCC
Q 000692 194 SSFRLIPIVGMGGIGKTTLAREVYNDKSV---E-D-FDPKAWVCVSDDFDVLRISKVILESITLS 253 (1349)
Q Consensus 194 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~---~-~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 253 (1349)
....++-|+|.+|+|||++|..++..... . + -..++||+....++.+++ .++++.++..
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~ 184 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLN 184 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCC
Confidence 45678999999999999999988743221 1 1 237899999998888776 4566666543
No 324
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.92 E-value=0.21 Score=54.29 Aligned_cols=127 Identities=18% Similarity=0.063 Sum_probs=66.6
Q ss_pred HHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCC--
Q 000692 178 KARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPC-- 255 (1349)
Q Consensus 178 ~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-- 255 (1349)
.+.++..+... ....-++|+|..|.||||+.+.++..... ....+++.-.+-... +...+++.....-.+
T Consensus 98 ~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~~~~--~~G~i~~~g~~v~~~-d~~~ei~~~~~~~~q~~ 169 (270)
T TIGR02858 98 ADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARILST--GISQLGLRGKKVGIV-DERSEIAGCVNGVPQHD 169 (270)
T ss_pred HHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCccCC--CCceEEECCEEeecc-hhHHHHHHHhccccccc
Confidence 34445555422 23468999999999999999999876532 223333321111000 011222222211111
Q ss_pred ------CcCChHHHHHHHHHHh-cCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecchhHHH
Q 000692 256 ------ELKDLNSVQLKLKEAL-FKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRSVDVAL 318 (1349)
Q Consensus 256 ------~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~~v~~ 318 (1349)
..+.... ...+...+ ...+=++++|.+.. .+.+..+...+. .|..||+||.+..+..
T Consensus 170 ~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~~--~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 170 VGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIGR--EEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred ccccccccccchH-HHHHHHHHHhCCCCEEEEeCCCc--HHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 1111111 11222222 25788999999843 345555555542 5788999999766643
No 325
>PHA02244 ATPase-like protein
Probab=94.92 E-value=0.16 Score=56.80 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.5
Q ss_pred EEEEEccCCChHHHHHHHHHcCC
Q 000692 198 LIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 198 vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
-|.|+|.+|+|||++|+++++..
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~l 143 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEAL 143 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999998864
No 326
>PRK10867 signal recognition particle protein; Provisional
Probab=94.85 E-value=0.08 Score=61.50 Aligned_cols=89 Identities=20% Similarity=0.198 Sum_probs=47.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHH--HHHHHHHHHccCCCC---CcCChHHHHHHHHH
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVL--RISKVILESITLSPC---ELKDLNSVQLKLKE 269 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 269 (1349)
.+.+|.++|.+|+||||.|..++.....+.-..++.|++ +.+... +-++..++..+.+.. ...+..++.....+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~-D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAA-DVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEc-cccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 358999999999999998888876543221112334443 333322 233444555443211 12233444433333
Q ss_pred HhcCCce-EEEEeCCC
Q 000692 270 ALFKKKY-LIVLDDVW 284 (1349)
Q Consensus 270 ~l~~~~~-LlVlDdv~ 284 (1349)
..+.+.+ ++|+|-.-
T Consensus 178 ~a~~~~~DvVIIDTaG 193 (433)
T PRK10867 178 EAKENGYDVVIVDTAG 193 (433)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 3333334 77777764
No 327
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.75 E-value=0.18 Score=52.82 Aligned_cols=120 Identities=15% Similarity=0.121 Sum_probs=60.4
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCC--CC-cc---cCce--------------EEEEecccccH--HHHHHHHHHHccCC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDK--SV-ED---FDPK--------------AWVCVSDDFDV--LRISKVILESITLS 253 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~--~~-~~---f~~~--------------~wv~~~~~~~~--~~~~~~i~~~l~~~ 253 (1349)
..+++|+|..|.|||||++.++... .. .+ |+.. +++ +.+.+.. .....+++...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~-v~q~~~~~~~~~~~~~l~~~--- 101 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFL-AFQYPPEIPGVKNADFLRYV--- 101 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEE-eecChhhccCccHHHHHhhc---
Confidence 3699999999999999999988752 11 11 1110 111 1111100 00111111111
Q ss_pred CCCcCChHHHHHHHHHHhcCCceEEEEeCCCCC-ChhhHHHhhccCCCC-CCCcEEEEEecchhHHHh
Q 000692 254 PCELKDLNSVQLKLKEALFKKKYLIVLDDVWSK-SYDLWQALKSPFMVG-APDSRIIVTTRSVDVALT 319 (1349)
Q Consensus 254 ~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~~~~~l~~~-~~gs~ilvTtR~~~v~~~ 319 (1349)
......-+...-.+.+.+-.++=++++|+.-.. +......+...+... ..|..||++|.+......
T Consensus 102 ~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~ 169 (200)
T cd03217 102 NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDY 169 (200)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 011111222233456666778889999998442 222233333333221 236678888888776653
No 328
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.75 E-value=0.22 Score=52.44 Aligned_cols=65 Identities=12% Similarity=0.014 Sum_probs=37.6
Q ss_pred HHHHHhcCCceEEEEeCCCCC-ChhhHHHhhccCCC-CCCCcEEEEEecchhHHHhhcCCceEeCCCCCh
Q 000692 266 KLKEALFKKKYLIVLDDVWSK-SYDLWQALKSPFMV-GAPDSRIIVTTRSVDVALTMGSGGYCELKLLSD 333 (1349)
Q Consensus 266 ~l~~~l~~~~~LlVlDdv~~~-~~~~~~~~~~~l~~-~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~~ 333 (1349)
.+.+.+..++-++++|+.... +......+...+.. ...|..||++|.+...... ...+.++.++.
T Consensus 137 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~~~~ 203 (207)
T PRK13539 137 ALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGPFAA 203 (207)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecCccC
Confidence 345556677889999997442 22223333333322 1246778899888665543 45666665443
No 329
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.74 E-value=0.12 Score=58.62 Aligned_cols=57 Identities=16% Similarity=0.211 Sum_probs=42.0
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcCCCCc----c-cCceEEEEecccccHHHHHHHHHHHcc
Q 000692 194 SSFRLIPIVGMGGIGKTTLAREVYNDKSVE----D-FDPKAWVCVSDDFDVLRISKVILESIT 251 (1349)
Q Consensus 194 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~----~-f~~~~wv~~~~~~~~~~~~~~i~~~l~ 251 (1349)
....++-|+|.+|+||||+|.+++...... . -..++||+....++.+++. ++++.++
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 356899999999999999999987654321 1 2378999998888877654 4455544
No 330
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.73 E-value=0.19 Score=51.13 Aligned_cols=119 Identities=18% Similarity=0.114 Sum_probs=61.7
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCC-----Cc--------CChHH
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPC-----EL--------KDLNS 262 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~--------~~~~~ 262 (1349)
..+++|+|..|.|||||++.++..... ....+++.-....... ......++.-.+ .. -+..+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~ 100 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLKP--DSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGGM 100 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHHH
Confidence 358999999999999999999875432 2233333211100000 011111111000 00 11122
Q ss_pred -HHHHHHHHhcCCceEEEEeCCCCC-ChhhHHHhhccCCCC-CCCcEEEEEecchhHHHh
Q 000692 263 -VQLKLKEALFKKKYLIVLDDVWSK-SYDLWQALKSPFMVG-APDSRIIVTTRSVDVALT 319 (1349)
Q Consensus 263 -~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~~~~~l~~~-~~gs~ilvTtR~~~v~~~ 319 (1349)
..-.+.+.+..++=++++|+.... +......+...+... ..|..||++|.+......
T Consensus 101 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 101 KQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 222456677788899999997442 222223333333221 236778999888766543
No 331
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.69 E-value=0.019 Score=59.55 Aligned_cols=36 Identities=28% Similarity=0.327 Sum_probs=15.7
Q ss_pred CCCccceEEecCC--CCc-ccccccccCCCCcEEEecCc
Q 000692 602 CLRHLRYLNFSDT--KIK-CLPESVTSLLNLEILILRDC 637 (1349)
Q Consensus 602 ~L~~Lr~L~Ls~~--~i~-~lp~~i~~L~~L~~L~l~~~ 637 (1349)
.|++|++|.+|.| ++. .++-...++++|++|++++|
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 3444555555444 222 33333333344555555544
No 332
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.69 E-value=0.14 Score=59.40 Aligned_cols=90 Identities=14% Similarity=0.139 Sum_probs=49.3
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccH--HHHHHHHHHHccCCCC---CcCChHHHHHHHHH
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDV--LRISKVILESITLSPC---ELKDLNSVQLKLKE 269 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 269 (1349)
.+.++.++|.+|+||||.|..++.....+.-..++-|++. .+.. .+.++......+.+.. ...+..+......+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D-~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD-LYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc-ccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 4689999999999999999888776421111123344433 2322 3334444555544322 11233344333333
Q ss_pred HhcCCce-EEEEeCCCC
Q 000692 270 ALFKKKY-LIVLDDVWS 285 (1349)
Q Consensus 270 ~l~~~~~-LlVlDdv~~ 285 (1349)
....+.+ ++|+|-.-.
T Consensus 177 ~~~~~~~DvVIIDTaGr 193 (428)
T TIGR00959 177 YAKENGFDVVIVDTAGR 193 (428)
T ss_pred HHHhcCCCEEEEeCCCc
Confidence 3434445 888888743
No 333
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.68 E-value=0.23 Score=61.87 Aligned_cols=157 Identities=20% Similarity=0.150 Sum_probs=81.9
Q ss_pred ccccchhhHHHHHHHHhccCC------CCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHH
Q 000692 170 AVYGRDEDKARVLKIVLKIDP------NDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRIS 243 (1349)
Q Consensus 170 ~~~Gr~~~~~~l~~~l~~~~~------~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 243 (1349)
.+.|.+...+++.+.+..... -+..-.+-|.++|++|.|||++|+.++...... | +.++.++ +.
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~-f---~~is~~~------~~ 222 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP-F---FTISGSD------FV 222 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC-E---EEEehHH------hH
Confidence 466766666555554432110 011223458999999999999999998865432 2 2222221 11
Q ss_pred HHHHHHccCCCCCcCChHHHHHHHHHHhcCCceEEEEeCCCCCC----------hhhHHHhhcc----CCC--CCCCcEE
Q 000692 244 KVILESITLSPCELKDLNSVQLKLKEALFKKKYLIVLDDVWSKS----------YDLWQALKSP----FMV--GAPDSRI 307 (1349)
Q Consensus 244 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------~~~~~~~~~~----l~~--~~~gs~i 307 (1349)
. .... .........+.......+.+|++|+++.-. ...+...... +.. ...+.-|
T Consensus 223 ~----~~~g-----~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~viv 293 (644)
T PRK10733 223 E----MFVG-----VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIV 293 (644)
T ss_pred H----hhhc-----ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeE
Confidence 0 0000 111222233333334578899999984420 1122222111 111 1234556
Q ss_pred EEEecchhHHHh-h-c---CCceEeCCCCChhhHHHHHHHHHh
Q 000692 308 IVTTRSVDVALT-M-G---SGGYCELKLLSDDDCWSVFVKHAF 345 (1349)
Q Consensus 308 lvTtR~~~v~~~-~-~---~~~~~~l~~L~~~~~~~l~~~~~~ 345 (1349)
|.||...+.... + . -.+.+.+...+.++-.+++..+..
T Consensus 294 IaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 294 IAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred EEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 667776554322 1 1 234678888888888888887764
No 334
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.68 E-value=0.33 Score=50.53 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCCceEEEEeCCCCC-ChhhHHHhhccCCC--CCCCcEEEEEecchhHHHhh
Q 000692 262 SVQLKLKEALFKKKYLIVLDDVWSK-SYDLWQALKSPFMV--GAPDSRIIVTTRSVDVALTM 320 (1349)
Q Consensus 262 ~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~~~~~l~~--~~~gs~ilvTtR~~~v~~~~ 320 (1349)
+..-.+.+.+-..+-+|+-|+--.. +.+.-+.+...+.. ...|..||+.|.+..++..+
T Consensus 148 qQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 148 QQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYA 209 (226)
T ss_pred HHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhC
Confidence 3334577888899999999986321 11112223332322 24578899999999999854
No 335
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.68 E-value=0.022 Score=59.08 Aligned_cols=85 Identities=29% Similarity=0.302 Sum_probs=59.2
Q ss_pred ccCCCcccEEEeccc--ccc-ccCccccCCCccceEEecCCCCcccc--cccccCCCCcEEEecCccCCCcCc----hhh
Q 000692 577 LPKFKKLRVLSLRRY--YIT-EVPISIGCLRHLRYLNFSDTKIKCLP--ESVTSLLNLEILILRDCLHLLKLP----SSI 647 (1349)
Q Consensus 577 ~~~l~~Lr~L~L~~~--~i~-~lp~~i~~L~~Lr~L~Ls~~~i~~lp--~~i~~L~~L~~L~l~~~~~~~~lp----~~i 647 (1349)
|..+++|+.|+++.| ++. .++--..++++|++|+|++|+|+-+- ..+.+|.+|..||+.+|.... +- ..+
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf 139 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN-LDDYREKVF 139 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc-cccHHHHHH
Confidence 567889999999999 444 45544556699999999999987421 125778888899999884332 32 125
Q ss_pred hccccccEEEecCCC
Q 000692 648 GNLVKLLHLDIEGAN 662 (1349)
Q Consensus 648 ~~L~~L~~L~l~~~~ 662 (1349)
.-+++|.+|+-....
T Consensus 140 ~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 140 LLLPSLKYLDGCDVD 154 (260)
T ss_pred HHhhhhccccccccC
Confidence 566777777654443
No 336
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.67 E-value=7.2 Score=41.54 Aligned_cols=96 Identities=23% Similarity=0.272 Sum_probs=58.1
Q ss_pred ccccchhhHHHHHHHHhccCC------CCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHH
Q 000692 170 AVYGRDEDKARVLKIVLKIDP------NDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRIS 243 (1349)
Q Consensus 170 ~~~Gr~~~~~~l~~~l~~~~~------~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 243 (1349)
.+.|-+...+.+.+...-+-. ......+-|.++|++|.||+.||++|+...... | .+++...
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST-F-----FSvSSSD------ 201 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST-F-----FSVSSSD------ 201 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCc-e-----EEeehHH------
Confidence 466777777777765532211 122347889999999999999999999875522 2 2333321
Q ss_pred HHHHHHccCCCCCcCChHHHHHHHHHHh-cCCceEEEEeCCCC
Q 000692 244 KVILESITLSPCELKDLNSVQLKLKEAL-FKKKYLIVLDDVWS 285 (1349)
Q Consensus 244 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~ 285 (1349)
++..- ..+.+.++..+.+.. .+|+-.|.+|.++.
T Consensus 202 --LvSKW------mGESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 202 --LVSKW------MGESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred --HHHHH------hccHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 11111 112334444444433 46889999999843
No 337
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.64 E-value=0.083 Score=58.43 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=25.9
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcCCCC
Q 000692 194 SSFRLIPIVGMGGIGKTTLAREVYNDKSV 222 (1349)
Q Consensus 194 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~ 222 (1349)
..++.++|||++|.|||.+|+++++....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~ 174 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGI 174 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCC
Confidence 56789999999999999999999998654
No 338
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.64 E-value=0.035 Score=58.83 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.2
Q ss_pred EEEEEccCCChHHHHHHHHHcCCC
Q 000692 198 LIPIVGMGGIGKTTLAREVYNDKS 221 (1349)
Q Consensus 198 vv~i~G~gGiGKTtLa~~~~~~~~ 221 (1349)
.|.|.|++|+||||+|+.+++...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 388999999999999999988754
No 339
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.59 E-value=0.049 Score=56.28 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.7
Q ss_pred EEEEEccCCChHHHHHHHHHcCC
Q 000692 198 LIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 198 vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
+|.|+|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998864
No 340
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.59 E-value=0.13 Score=51.05 Aligned_cols=118 Identities=15% Similarity=0.027 Sum_probs=59.6
Q ss_pred EEEEEEccCCChHHHHHHHHHcCCCCcccCce--EEEEecccccHHHHHHHHHH---HccCCC-CCcCC-------hHHH
Q 000692 197 RLIPIVGMGGIGKTTLAREVYNDKSVEDFDPK--AWVCVSDDFDVLRISKVILE---SITLSP-CELKD-------LNSV 263 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~--~wv~~~~~~~~~~~~~~i~~---~l~~~~-~~~~~-------~~~~ 263 (1349)
..|-|++-.|.||||.|..++-+....++.+. -|+...........++.+.- +.+... ....+ ..+.
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~ 85 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKAA 85 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHHH
Confidence 57788888999999999887766433323221 12322212222233333200 001100 00011 1122
Q ss_pred HHHHHHHhcCCc-eEEEEeCCCC---CChhhHHHhhccCCCCCCCcEEEEEecch
Q 000692 264 QLKLKEALFKKK-YLIVLDDVWS---KSYDLWQALKSPFMVGAPDSRIIVTTRSV 314 (1349)
Q Consensus 264 ~~~l~~~l~~~~-~LlVlDdv~~---~~~~~~~~~~~~l~~~~~gs~ilvTtR~~ 314 (1349)
....++.+...+ =++|||.+-. ...-..+++...+....++..||+|-|+.
T Consensus 86 ~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 86 WQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 233444454444 5999999821 11122344554454455678999999985
No 341
>PRK06217 hypothetical protein; Validated
Probab=94.57 E-value=0.096 Score=53.95 Aligned_cols=34 Identities=29% Similarity=0.456 Sum_probs=26.8
Q ss_pred EEEEEccCCChHHHHHHHHHcCCCCcc--cCceEEE
Q 000692 198 LIPIVGMGGIGKTTLAREVYNDKSVED--FDPKAWV 231 (1349)
Q Consensus 198 vv~i~G~gGiGKTtLa~~~~~~~~~~~--f~~~~wv 231 (1349)
.|.|.|.+|+||||+|+++........ -|..+|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeec
Confidence 589999999999999999998765443 2556664
No 342
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.56 E-value=0.089 Score=59.65 Aligned_cols=82 Identities=20% Similarity=0.269 Sum_probs=50.6
Q ss_pred CCccccchhhHHHHHHHHhcc--------CCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc--cCceEEEEe-ccc
Q 000692 168 EPAVYGRDEDKARVLKIVLKI--------DPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED--FDPKAWVCV-SDD 236 (1349)
Q Consensus 168 ~~~~~Gr~~~~~~l~~~l~~~--------~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~--f~~~~wv~~-~~~ 236 (1349)
+..++|.++.++.+...+... +-.....++.|.++|++|+|||++|+.++....... .+..-+... ...
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG 90 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 90 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCccc
Confidence 346889988888887666532 000112346789999999999999999988765443 233322221 122
Q ss_pred ccHHHHHHHHHHH
Q 000692 237 FDVLRISKVILES 249 (1349)
Q Consensus 237 ~~~~~~~~~i~~~ 249 (1349)
.+.+.+.+.+.+.
T Consensus 91 ~dvE~i~r~l~e~ 103 (441)
T TIGR00390 91 RDVESMVRDLTDA 103 (441)
T ss_pred CCHHHHHHHHHHH
Confidence 3455666655544
No 343
>PTZ00035 Rad51 protein; Provisional
Probab=94.55 E-value=0.24 Score=56.10 Aligned_cols=58 Identities=19% Similarity=0.179 Sum_probs=41.0
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcCCCC---c-c-cCceEEEEecccccHHHHHHHHHHHccC
Q 000692 194 SSFRLIPIVGMGGIGKTTLAREVYNDKSV---E-D-FDPKAWVCVSDDFDVLRISKVILESITL 252 (1349)
Q Consensus 194 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~---~-~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 252 (1349)
....++.|+|..|+||||++..++..... . + -..++|++....++.+++ .++++.++.
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 45689999999999999999988754331 1 1 345779998877776664 455665543
No 344
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.49 E-value=0.0026 Score=65.55 Aligned_cols=42 Identities=26% Similarity=0.279 Sum_probs=21.1
Q ss_pred ccCCCcccEEEeccccccccCccccCCCccceEEecCCCCccc
Q 000692 577 LPKFKKLRVLSLRRYYITEVPISIGCLRHLRYLNFSDTKIKCL 619 (1349)
Q Consensus 577 ~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~l 619 (1349)
+.+++.|.||.|+-|.|+.+- .+..+++|+.|.|+.|.|..+
T Consensus 37 c~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sl 78 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESL 78 (388)
T ss_pred HHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccH
Confidence 345555555555555555442 244555555555555555444
No 345
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.42 E-value=0.086 Score=59.82 Aligned_cols=83 Identities=22% Similarity=0.273 Sum_probs=51.4
Q ss_pred CCccccchhhHHHHHHHHhcc--------CCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc--cCceEEEEe-ccc
Q 000692 168 EPAVYGRDEDKARVLKIVLKI--------DPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED--FDPKAWVCV-SDD 236 (1349)
Q Consensus 168 ~~~~~Gr~~~~~~l~~~l~~~--------~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~--f~~~~wv~~-~~~ 236 (1349)
+..++|.++.++.+..++... ........+.|.++|+.|+|||++|+.++....... ++...|... -..
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG 93 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCccc
Confidence 456899999999888887531 000011246789999999999999999988754332 343322221 122
Q ss_pred ccHHHHHHHHHHHc
Q 000692 237 FDVLRISKVILESI 250 (1349)
Q Consensus 237 ~~~~~~~~~i~~~l 250 (1349)
.+.+...+.+.+..
T Consensus 94 ~d~e~~ir~L~~~A 107 (443)
T PRK05201 94 RDVESIIRDLVEIA 107 (443)
T ss_pred CCHHHHHHHHHHHH
Confidence 24555555555443
No 346
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.42 E-value=0.074 Score=55.43 Aligned_cols=111 Identities=15% Similarity=0.110 Sum_probs=58.0
Q ss_pred EEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCce
Q 000692 197 RLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKKKY 276 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 276 (1349)
+.|.|+|+.|.||||++..+....... ....++.- .++.. ..... ...+-.......+.....+.++..++..+=
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~-~~~~i~t~-e~~~E--~~~~~-~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd 76 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKN-KTHHILTI-EDPIE--FVHES-KRSLINQREVGLDTLSFENALKAALRQDPD 76 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhc-CCcEEEEE-cCCcc--ccccC-ccceeeecccCCCccCHHHHHHHHhcCCcC
Confidence 478999999999999999877654211 22333332 22111 00000 000000000011122345567777777788
Q ss_pred EEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecchhHH
Q 000692 277 LIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRSVDVA 317 (1349)
Q Consensus 277 LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~~v~ 317 (1349)
.|++|++.+. +.+..+.... ..|..|+.|+....+.
T Consensus 77 ~ii~gEird~--e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 77 VILVGEMRDL--ETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred EEEEcCCCCH--HHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 9999999543 3333333222 2455677777655444
No 347
>PRK05439 pantothenate kinase; Provisional
Probab=94.41 E-value=0.19 Score=55.47 Aligned_cols=81 Identities=17% Similarity=0.033 Sum_probs=43.8
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-cCceEEEEecccccHHHHHHH--HHHHccCCCCCcCChHHHHHHHHH
Q 000692 193 DSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-FDPKAWVCVSDDFDVLRISKV--ILESITLSPCELKDLNSVQLKLKE 269 (1349)
Q Consensus 193 ~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~--i~~~l~~~~~~~~~~~~~~~~l~~ 269 (1349)
....-+|+|.|.+|+||||+|+.+........ ...+.-++...-....+.+.. +...- ...+.-|.+.+...+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~k--g~Pes~D~~~l~~~L~~ 160 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRK--GFPESYDMRALLRFLSD 160 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccC--CCcccccHHHHHHHHHH
Confidence 34678999999999999999999876432111 122334444333222222211 11111 11234456666666666
Q ss_pred HhcCCc
Q 000692 270 ALFKKK 275 (1349)
Q Consensus 270 ~l~~~~ 275 (1349)
...++.
T Consensus 161 Lk~G~~ 166 (311)
T PRK05439 161 VKSGKP 166 (311)
T ss_pred HHcCCC
Confidence 655554
No 348
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.35 E-value=0.41 Score=50.77 Aligned_cols=25 Identities=32% Similarity=0.271 Sum_probs=22.1
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
..+++|+|..|.|||||++.++...
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998754
No 349
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.34 E-value=0.24 Score=56.14 Aligned_cols=60 Identities=22% Similarity=0.230 Sum_probs=39.0
Q ss_pred cccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecc
Q 000692 171 VYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSD 235 (1349)
Q Consensus 171 ~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~ 235 (1349)
++|+...+.++.+.+..... ...-|.|+|-.|+||+++|+.+++..... -..-+-|++..
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~s~r~-~~pfv~vnc~~ 60 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYLSKRW-QGPLVKLNCAA 60 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHhcCcc-CCCeEEEeCCC
Confidence 36777777777776654322 23467999999999999999987653322 22334455554
No 350
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.33 E-value=0.17 Score=55.49 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=21.6
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHc
Q 000692 194 SSFRLIPIVGMGGIGKTTLAREVYN 218 (1349)
Q Consensus 194 ~~~~vv~i~G~gGiGKTtLa~~~~~ 218 (1349)
..+.+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999987644
No 351
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.32 E-value=0.03 Score=56.37 Aligned_cols=27 Identities=37% Similarity=0.480 Sum_probs=24.1
Q ss_pred EEEEEEccCCChHHHHHHHHHcCCCCc
Q 000692 197 RLIPIVGMGGIGKTTLAREVYNDKSVE 223 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~~~~~~ 223 (1349)
.+|+|-||-|+||||||+.++++....
T Consensus 5 ~~IvI~G~IG~GKSTLa~~La~~l~~~ 31 (216)
T COG1428 5 MVIVIEGMIGAGKSTLAQALAEHLGFK 31 (216)
T ss_pred cEEEEecccccCHHHHHHHHHHHhCCc
Confidence 689999999999999999999987643
No 352
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.31 E-value=0.048 Score=59.64 Aligned_cols=91 Identities=19% Similarity=0.218 Sum_probs=50.0
Q ss_pred HHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCc
Q 000692 178 KARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCEL 257 (1349)
Q Consensus 178 ~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 257 (1349)
...+++.+... .+-|.++|+.|+|||++++..........|- +.-++.+...+...+++.+-..+.......
T Consensus 22 ~~~ll~~l~~~-------~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~-~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~ 93 (272)
T PF12775_consen 22 YSYLLDLLLSN-------GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYL-VITINFSAQTTSNQLQKIIESKLEKRRGRV 93 (272)
T ss_dssp HHHHHHHHHHC-------TEEEEEESSTTSSHHHHHHHHHHCSTTCCEE-EEEEES-TTHHHHHHHHCCCTTECECTTEE
T ss_pred HHHHHHHHHHc-------CCcEEEECCCCCchhHHHHhhhccCCccccc-eeEeeccCCCCHHHHHHHHhhcEEcCCCCC
Confidence 34556666543 2578999999999999999988754322222 334555655554444332212221111000
Q ss_pred CChHHHHHHHHHHhcCCceEEEEeCCCCC
Q 000692 258 KDLNSVQLKLKEALFKKKYLIVLDDVWSK 286 (1349)
Q Consensus 258 ~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 286 (1349)
..--.+|+.++.+||+--.
T Consensus 94 ----------~gP~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 94 ----------YGPPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp ----------EEEESSSEEEEEEETTT-S
T ss_pred ----------CCCCCCcEEEEEecccCCC
Confidence 0001368899999999443
No 353
>PRK07667 uridine kinase; Provisional
Probab=94.30 E-value=0.057 Score=56.09 Aligned_cols=39 Identities=21% Similarity=0.309 Sum_probs=29.9
Q ss_pred HHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCC
Q 000692 178 KARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 178 ~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
.+.+.+.+.... +...+|+|.|.+|+||||+|..+....
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456666664432 344899999999999999999998754
No 354
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.29 E-value=0.21 Score=53.36 Aligned_cols=49 Identities=18% Similarity=0.135 Sum_probs=32.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHH
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVI 246 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 246 (1349)
...++.|.|..|+||||+|.+++.....++ ..+++++... +..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 346999999999999999877665432122 3456666433 345555554
No 355
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.27 E-value=0.19 Score=53.83 Aligned_cols=29 Identities=28% Similarity=0.258 Sum_probs=25.0
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHcCCC
Q 000692 193 DSSFRLIPIVGMGGIGKTTLAREVYNDKS 221 (1349)
Q Consensus 193 ~~~~~vv~i~G~gGiGKTtLa~~~~~~~~ 221 (1349)
.....+|+|.|..|+|||||++.+.....
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34678999999999999999999887654
No 356
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.27 E-value=0.064 Score=56.52 Aligned_cols=121 Identities=12% Similarity=0.098 Sum_probs=58.6
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCC---CcCChHHHHHHHHHH--
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPC---ELKDLNSVQLKLKEA-- 270 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~-- 270 (1349)
.+++.|+|+.|.||||+.+.+........-...+|. .. ... ....++...+..... .......-.+++...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a--~~-~~~-~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~ 104 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPA--DS-ATI-GLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALR 104 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEc--CC-cEE-eeeeeeeeeeCCccChhhccchHHHHHHHHHHHHH
Confidence 378999999999999999998632110001111111 10 000 011112222221111 111111112222222
Q ss_pred hcCCceEEEEeCCCCCC-hhhH----HHhhccCCCC-CCCcEEEEEecchhHHHhh
Q 000692 271 LFKKKYLIVLDDVWSKS-YDLW----QALKSPFMVG-APDSRIIVTTRSVDVALTM 320 (1349)
Q Consensus 271 l~~~~~LlVlDdv~~~~-~~~~----~~~~~~l~~~-~~gs~ilvTtR~~~v~~~~ 320 (1349)
+..++.|+++|...... ..+. ..+...+... ..+..+|+||.+.+.+...
T Consensus 105 ~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 105 LATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred hCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 24678999999985532 1111 1233333322 2345799999998887654
No 357
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.26 E-value=0.85 Score=48.88 Aligned_cols=95 Identities=18% Similarity=0.240 Sum_probs=63.4
Q ss_pred EEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCce
Q 000692 197 RLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKKKY 276 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 276 (1349)
+.+.++|+.|+|||+-++.+++... ...-+..+..++...++..+......... ....+....+...+++..-
T Consensus 95 ~l~~vyg~~g~gKt~a~~~y~~s~p-----~~~l~~~~p~~~a~~~i~~i~~~~~~~~~--~~~~d~~~~~~~~l~~~~~ 167 (297)
T COG2842 95 SLVVVYGYAGLGKTQAAKNYAPSNP-----NALLIEADPSYTALVLILIICAAAFGATD--GTINDLTERLMIRLRDTVR 167 (297)
T ss_pred ceEEEeccccchhHHHHHhhcccCc-----cceeecCChhhHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHccCcc
Confidence 4889999999999999999887532 23334556666666666666655443322 2333444455566688899
Q ss_pred EEEEeCCCCCChhhHHHhhccC
Q 000692 277 LIVLDDVWSKSYDLWQALKSPF 298 (1349)
Q Consensus 277 LlVlDdv~~~~~~~~~~~~~~l 298 (1349)
+|+.|+...-....++.+....
T Consensus 168 ~iivDEA~~L~~~ale~lr~i~ 189 (297)
T COG2842 168 LIIVDEADRLPYRALEELRRIH 189 (297)
T ss_pred eeeeehhhccChHHHHHHHHHH
Confidence 9999999776666666665443
No 358
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.26 E-value=0.48 Score=58.19 Aligned_cols=133 Identities=14% Similarity=0.139 Sum_probs=73.2
Q ss_pred CCccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHH
Q 000692 168 EPAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVIL 247 (1349)
Q Consensus 168 ~~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 247 (1349)
...++|....+.++.+.+..... ....|.|+|..|+|||++|+.+++..... -...+.|++..-.. ..+..
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~s~r~-~~pfv~i~c~~~~~--~~~~~-- 265 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYLSPRA-KRPFVKVNCAALSE--TLLES-- 265 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHhCCCC-CCCeEEeecCCCCH--HHHHH--
Confidence 45689999999888887764322 23467899999999999999998754321 22345555554322 22211
Q ss_pred HHccCCC-CCcCC-hHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHHhhccCCCCC-----------CCcEEEEEecc
Q 000692 248 ESITLSP-CELKD-LNSVQLKLKEALFKKKYLIVLDDVWSKSYDLWQALKSPFMVGA-----------PDSRIIVTTRS 313 (1349)
Q Consensus 248 ~~l~~~~-~~~~~-~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~-----------~gs~ilvTtR~ 313 (1349)
.+.+.. ..... .......+ .....-.|+||+|..-.......+...+..+. ...+||.||..
T Consensus 266 -~lfg~~~~~~~~~~~~~~g~~---~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~ 340 (534)
T TIGR01817 266 -ELFGHEKGAFTGAIAQRKGRF---ELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNR 340 (534)
T ss_pred -HHcCCCCCccCCCCcCCCCcc---cccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCC
Confidence 121111 10000 00000000 12235568999997665555555555443221 13588887754
No 359
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.26 E-value=0.074 Score=49.81 Aligned_cols=68 Identities=22% Similarity=0.293 Sum_probs=39.0
Q ss_pred EEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcC
Q 000692 197 RLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFK 273 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 273 (1349)
.-|.|.|.+|+||||+|.+++.... .-|+++++-..-..+...--+... +..-|.+.+.+.+...+.+
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~------~~~i~isd~vkEn~l~~gyDE~y~---c~i~DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTG------LEYIEISDLVKENNLYEGYDEEYK---CHILDEDKVLDELEPLMIE 75 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhC------CceEehhhHHhhhcchhccccccc---CccccHHHHHHHHHHHHhc
Confidence 4578999999999999999986433 236776654333333222111111 1233445556666555544
No 360
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.25 E-value=0.095 Score=57.88 Aligned_cols=85 Identities=20% Similarity=0.142 Sum_probs=51.9
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCC-----CcCChHHHHHHH
Q 000692 193 DSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPC-----ELKDLNSVQLKL 267 (1349)
Q Consensus 193 ~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 267 (1349)
-+..+++-|+|..|+||||||..+....... -..++||+....++.. .++.++.+.+ ..+..++....+
T Consensus 50 ~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~-g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 50 LPRGRIVEIYGPESSGKTTLALHAIAEAQKQ-GGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHT-T-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred cccCceEEEeCCCCCchhhhHHHHHHhhhcc-cceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHH
Confidence 3456899999999999999999988764322 4568899988877653 3344443322 223345555555
Q ss_pred HHHhcC-CceEEEEeCC
Q 000692 268 KEALFK-KKYLIVLDDV 283 (1349)
Q Consensus 268 ~~~l~~-~~~LlVlDdv 283 (1349)
.+.++. .--++|+|-|
T Consensus 124 e~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHHHTTSESEEEEE-C
T ss_pred HHHhhcccccEEEEecC
Confidence 555544 3458888988
No 361
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.24 E-value=0.19 Score=51.51 Aligned_cols=122 Identities=16% Similarity=0.109 Sum_probs=59.9
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccC---CCC--Cc----------CCh
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITL---SPC--EL----------KDL 260 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~---~~~--~~----------~~~ 260 (1349)
..+++|+|..|.|||||++.++..... ....+.+.-........-.......+.. ... .. -+.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~ 103 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLEEP--DSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLSG 103 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCCH
Confidence 358999999999999999999865332 2233333211000000000011111110 000 00 111
Q ss_pred -HHHHHHHHHHhcCCceEEEEeCCCCC-ChhhHHHhhccCCC--CCCCcEEEEEecchhHHHh
Q 000692 261 -NSVQLKLKEALFKKKYLIVLDDVWSK-SYDLWQALKSPFMV--GAPDSRIIVTTRSVDVALT 319 (1349)
Q Consensus 261 -~~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~~~~~l~~--~~~gs~ilvTtR~~~v~~~ 319 (1349)
+...-.+.+.+..++=++++|+.... +......+...+.. ...|..||++|.+.+....
T Consensus 104 G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 166 (178)
T cd03229 104 GQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAAR 166 (178)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 22223355666778889999987432 22223333333322 1225678888887665543
No 362
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.24 E-value=0.64 Score=48.92 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=22.2
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
..+++|.|..|.|||||++.++.-.
T Consensus 31 G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 31 GELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcC
Confidence 3689999999999999999998754
No 363
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.23 E-value=0.1 Score=53.49 Aligned_cols=78 Identities=26% Similarity=0.237 Sum_probs=43.6
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCC--CCCcCChHHHHHHHHHHh
Q 000692 194 SSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLS--PCELKDLNSVQLKLKEAL 271 (1349)
Q Consensus 194 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~--~~~~~~~~~~~~~l~~~l 271 (1349)
.++.+|+|.|.+|+||||+|+.++...... .+.-++-.. +-...-.....+..... ...+-+.+-+...+...+
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~---~~~~I~~D~-YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~ 81 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE---KVVVISLDD-YYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLK 81 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC---cceEeeccc-cccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHH
Confidence 456899999999999999999998875533 111111111 11111111111111111 113455666677777777
Q ss_pred cCCc
Q 000692 272 FKKK 275 (1349)
Q Consensus 272 ~~~~ 275 (1349)
++++
T Consensus 82 ~g~~ 85 (218)
T COG0572 82 QGKP 85 (218)
T ss_pred cCCc
Confidence 7777
No 364
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.22 E-value=0.32 Score=51.64 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=22.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
..+++|+|..|.|||||++.++...
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3589999999999999999987653
No 365
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.20 E-value=0.19 Score=55.84 Aligned_cols=82 Identities=24% Similarity=0.299 Sum_probs=54.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCC-----CcCChHHHHHHHHH
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPC-----ELKDLNSVQLKLKE 269 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 269 (1349)
...+|.|-|-+|||||||..+++.+...++ .+.+|+-.+. ..++ +--+++++.... ...+.++..+.+.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~--~vLYVsGEES--~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~- 165 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLAKRG--KVLYVSGEES--LQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELE- 165 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHHhcC--cEEEEeCCcC--HHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHH-
Confidence 457999999999999999999998765443 6777765544 3333 333556664332 2234444444443
Q ss_pred HhcCCceEEEEeCCC
Q 000692 270 ALFKKKYLIVLDDVW 284 (1349)
Q Consensus 270 ~l~~~~~LlVlDdv~ 284 (1349)
+.++-++|+|-+.
T Consensus 166 --~~~p~lvVIDSIQ 178 (456)
T COG1066 166 --QEKPDLVVIDSIQ 178 (456)
T ss_pred --hcCCCEEEEeccc
Confidence 3688999999983
No 366
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.20 E-value=0.13 Score=54.39 Aligned_cols=24 Identities=38% Similarity=0.396 Sum_probs=21.0
Q ss_pred EEEEEccCCChHHHHHHHHHcCCC
Q 000692 198 LIPIVGMGGIGKTTLAREVYNDKS 221 (1349)
Q Consensus 198 vv~i~G~gGiGKTtLa~~~~~~~~ 221 (1349)
+|+|.|..|+||||+|+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999987643
No 367
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.20 E-value=0.41 Score=59.84 Aligned_cols=119 Identities=18% Similarity=0.214 Sum_probs=72.8
Q ss_pred ccccchhhHHHHHHHHhccCCCCC--CCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHH
Q 000692 170 AVYGRDEDKARVLKIVLKIDPNDD--SSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVIL 247 (1349)
Q Consensus 170 ~~~Gr~~~~~~l~~~l~~~~~~~~--~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 247 (1349)
.++|.++.+..|.+.+........ .......+.|+.|+|||-||++++.... ...+..+-++.++- .. +.
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~F-gse~~~IriDmse~------~e-vs 634 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVF-GSEENFIRLDMSEF------QE-VS 634 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHc-CCccceEEechhhh------hh-hh
Confidence 588999999999998876553212 2467888999999999999999887542 11344444444432 22 33
Q ss_pred HHccCCCCCcCChHHHHHHHHHHhcCCce-EEEEeCCCCCChhhHHHhhccC
Q 000692 248 ESITLSPCELKDLNSVQLKLKEALFKKKY-LIVLDDVWSKSYDLWQALKSPF 298 (1349)
Q Consensus 248 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~~~~~~~~~~~~l 298 (1349)
+.++.++. ... .+....+.+.++.++| +|+||||...+.+....+...+
T Consensus 635 kligsp~g-yvG-~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~l 684 (898)
T KOG1051|consen 635 KLIGSPPG-YVG-KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLL 684 (898)
T ss_pred hccCCCcc-ccc-chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHH
Confidence 33333322 111 1122356667777776 6668999777666665444443
No 368
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.18 E-value=0.21 Score=57.75 Aligned_cols=39 Identities=28% Similarity=0.408 Sum_probs=28.4
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEe
Q 000692 194 SSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCV 233 (1349)
Q Consensus 194 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~ 233 (1349)
..+.+|.++|..|+||||+|..++.....+++ .++.|++
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~-kV~lV~~ 136 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGF-KPCLVCA 136 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCC-CEEEEcC
Confidence 34689999999999999999998875543323 3444544
No 369
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.16 E-value=0.2 Score=54.10 Aligned_cols=49 Identities=12% Similarity=0.287 Sum_probs=35.1
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHH
Q 000692 194 SSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKV 245 (1349)
Q Consensus 194 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 245 (1349)
....++.|.|.+|+|||++|.++....- +.-..++||+..+. ..++.+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~-~~ge~~lyvs~ee~--~~~i~~~ 67 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGL-QMGEPGIYVALEEH--PVQVRRN 67 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCcEEEEEeeCC--HHHHHHH
Confidence 4568999999999999999998765432 22457888887664 4444444
No 370
>PRK13948 shikimate kinase; Provisional
Probab=94.15 E-value=0.33 Score=49.36 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=23.5
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCCC
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDKS 221 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~~ 221 (1349)
..+.|.++|+.|+||||+++.+++...
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 457889999999999999999988754
No 371
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=94.14 E-value=0.41 Score=51.12 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=22.1
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
..+++|+|..|.|||||++.++...
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3699999999999999999998753
No 372
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.09 E-value=0.18 Score=55.13 Aligned_cols=89 Identities=16% Similarity=0.129 Sum_probs=49.5
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHH--HHHHHHHHHccCCC---CCcCChHH-HHHHHH
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVL--RISKVILESITLSP---CELKDLNS-VQLKLK 268 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~---~~~~~~~~-~~~~l~ 268 (1349)
..++++++|++|+||||++..++...... -..+.++++. .+... +-++..++..+... ....+... ....+.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~-g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~ 148 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQ-GKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQ 148 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHH
Confidence 45899999999999999999988765322 2245555543 23222 23333444444221 11122222 223444
Q ss_pred HHhcCCceEEEEeCCCC
Q 000692 269 EALFKKKYLIVLDDVWS 285 (1349)
Q Consensus 269 ~~l~~~~~LlVlDdv~~ 285 (1349)
....+..=++++|-.-.
T Consensus 149 ~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 149 KAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHCCCCEEEEeCCCC
Confidence 44445556888898743
No 373
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.05 E-value=0.95 Score=55.14 Aligned_cols=132 Identities=18% Similarity=0.146 Sum_probs=74.5
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHH-HHHHHHhc
Q 000692 194 SSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQ-LKLKEALF 272 (1349)
Q Consensus 194 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~-~~l~~~l~ 272 (1349)
...+.+.++|++|.|||.||+++++..... | +.+... + +..+. ..+.+... ..+....+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~-f-----i~v~~~-~-------l~sk~------vGesek~ir~~F~~A~~ 333 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSR-F-----ISVKGS-E-------LLSKW------VGESEKNIRELFEKARK 333 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCe-E-----EEeeCH-H-------Hhccc------cchHHHHHHHHHHHHHc
Confidence 455689999999999999999999954433 3 222211 1 11110 11122222 23334445
Q ss_pred CCceEEEEeCCCCC------C-----hhhHHHhhccCCC--CCCCcEEEEEecchhHHHh-h----cCCceEeCCCCChh
Q 000692 273 KKKYLIVLDDVWSK------S-----YDLWQALKSPFMV--GAPDSRIIVTTRSVDVALT-M----GSGGYCELKLLSDD 334 (1349)
Q Consensus 273 ~~~~LlVlDdv~~~------~-----~~~~~~~~~~l~~--~~~gs~ilvTtR~~~v~~~-~----~~~~~~~l~~L~~~ 334 (1349)
..+..|.+|+++.- + .....++...+.. ...+..||-||-....... + .-...+.+.+-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 78999999998431 1 0122333333322 2233344555544333321 1 12347889999999
Q ss_pred hHHHHHHHHHh
Q 000692 335 DCWSVFVKHAF 345 (1349)
Q Consensus 335 ~~~~l~~~~~~ 345 (1349)
+..+.|..+..
T Consensus 414 ~r~~i~~~~~~ 424 (494)
T COG0464 414 ERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHhc
Confidence 99999999884
No 374
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.04 E-value=0.75 Score=48.51 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=21.4
Q ss_pred cEEEEEEccCCChHHHHHHHHHcC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYND 219 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~ 219 (1349)
..+++|.|..|.|||||++.++.-
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999764
No 375
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.01 E-value=0.1 Score=54.45 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=23.7
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcCC
Q 000692 194 SSFRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 194 ~~~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
....+|+|+|++|+||||+|+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998754
No 376
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.99 E-value=0.012 Score=60.46 Aligned_cols=224 Identities=19% Similarity=0.171 Sum_probs=125.6
Q ss_pred ccCCCccceEEecCCCCc-----ccccccccCCCCcEEEecCcc---CCCcCch-------hhhccccccEEEecCCCcc
Q 000692 600 IGCLRHLRYLNFSDTKIK-----CLPESVTSLLNLEILILRDCL---HLLKLPS-------SIGNLVKLLHLDIEGANLL 664 (1349)
Q Consensus 600 i~~L~~Lr~L~Ls~~~i~-----~lp~~i~~L~~L~~L~l~~~~---~~~~lp~-------~i~~L~~L~~L~l~~~~~~ 664 (1349)
+..+..+..++||+|.|. .+...|.+-.+|++-+++.-. ....+|. .+-++++|+..++++|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 445788999999999886 456677888899999988631 1123333 4567899999999999877
Q ss_pred ccCccc----cccCcCCCCCCeeEeCcCC--ccCcc-cccccccCCceEEEcCCcCCCChhhhhHhhccCCCCCCeEEEE
Q 000692 665 SELPLR----MKELKCLQTLTNFIVSKGS--GCTLK-DLKNWKFLRGRLCISGLENVINSQEANEAMLREKKGLKFLQLE 737 (1349)
Q Consensus 665 ~~~p~~----i~~L~~L~~L~~~~~~~~~--~~~~~-~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 737 (1349)
...|+. |++-+.|.+|...+++.+. +..+. .|..| +.......++.|+.....
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~l--------------------a~nKKaa~kp~Le~vicg 165 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHL--------------------AYNKKAADKPKLEVVICG 165 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHH--------------------HHHhhhccCCCceEEEec
Confidence 666654 6677888888655443322 11111 01111 111223455666665554
Q ss_pred ecCCCCCccchHHHHHHhhcCCCCCCCCcEEEeeeCCCCCCcc------cCCCCCCCeeEEEEecCCCCCC----CC-CC
Q 000692 738 WGAELDDSRDKAREMNILDMLQPHRNVKGLAVNFYGGAKFPSW------VGDPSFSNIVFLILQNCKRCTS----LP-TL 806 (1349)
Q Consensus 738 ~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~------~~~~~l~~L~~L~L~~~~~~~~----l~-~l 806 (1349)
.|.....+.. ..-..+..+.+|+.+.+..|++. |.. .+-..+.+|+.|++.+|..... +. .+
T Consensus 166 rNRlengs~~-----~~a~~l~sh~~lk~vki~qNgIr--pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al 238 (388)
T COG5238 166 RNRLENGSKE-----LSAALLESHENLKEVKIQQNGIR--PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADAL 238 (388)
T ss_pred cchhccCcHH-----HHHHHHHhhcCceeEEeeecCcC--cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHh
Confidence 4332222111 11122444567888888776543 221 1111357889999988764221 11 14
Q ss_pred CCcCCCceeeecCCCCceEeCc-cccCCCCccCCCCcceEeccCcc
Q 000692 807 GQLCSLKDLTIVGMSGLRSVGS-EIYGEGSSKPFESLQSLYFEDLQ 851 (1349)
Q Consensus 807 ~~l~~L~~L~l~~~~~l~~i~~-~~~~~~~~~~f~~L~~L~l~~~~ 851 (1349)
...+.|+.|.+..|- ++.-+. .++..-....+|+|..|.+.+..
T Consensus 239 ~~W~~lrEL~lnDCl-ls~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 239 CEWNLLRELRLNDCL-LSNEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred cccchhhhccccchh-hccccHHHHHHHhhhhcCCCccccccchhh
Confidence 445668888887763 222111 11111111346777777666543
No 377
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.99 E-value=0.037 Score=53.29 Aligned_cols=22 Identities=45% Similarity=0.638 Sum_probs=19.9
Q ss_pred EEEEccCCChHHHHHHHHHcCC
Q 000692 199 IPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 199 v~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
|+|.|+.|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998763
No 378
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.97 E-value=0.57 Score=48.19 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=22.1
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
..+++|.|..|.|||||++.++...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998754
No 379
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=93.94 E-value=0.2 Score=52.28 Aligned_cols=85 Identities=21% Similarity=0.306 Sum_probs=52.1
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEeccc-ccHHHHHHHHHHHccCCCC-----CcCC--hHH-----
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDD-FDVLRISKVILESITLSPC-----ELKD--LNS----- 262 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~-----~~~~--~~~----- 262 (1349)
.+.++|.|.+|+|||+|+.++++... -+.++++-+.+. ..+.++.+++...-..+.. ..++ ..+
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~~---~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQD---ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHCT---TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhccc---ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 35789999999999999999988754 344577777755 3455666665443111110 1111 111
Q ss_pred HHHHHHHHh--cCCceEEEEeCC
Q 000692 263 VQLKLKEAL--FKKKYLIVLDDV 283 (1349)
Q Consensus 263 ~~~~l~~~l--~~~~~LlVlDdv 283 (1349)
..-.+.+++ +++.+|+++||+
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETH
T ss_pred cchhhhHHHhhcCCceeehhhhh
Confidence 111222333 689999999998
No 380
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=93.94 E-value=0.24 Score=62.75 Aligned_cols=134 Identities=19% Similarity=0.125 Sum_probs=73.4
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILE 248 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 248 (1349)
..++|+...+.++.+.+..... ....|.|+|..|+|||++|+.+++..... -...+.+++..-.. ..+-..+..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s~r~-~~~~v~i~c~~~~~-~~~~~~lfg 449 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLSGRN-NRRMVKMNCAAMPA-GLLESDLFG 449 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhcCCC-CCCeEEEecccCCh-hHhhhhhcC
Confidence 3589999888888776654322 23468999999999999999998754322 23445556554321 111111111
Q ss_pred HccCCCCCcCChHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHHhhccCCCC-----------CCCcEEEEEecc
Q 000692 249 SITLSPCELKDLNSVQLKLKEALFKKKYLIVLDDVWSKSYDLWQALKSPFMVG-----------APDSRIIVTTRS 313 (1349)
Q Consensus 249 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~-----------~~gs~ilvTtR~ 313 (1349)
........ ........+ -....-.|+||||..-..+....+...+..+ ..+.|||.||..
T Consensus 450 ~~~~~~~g--~~~~~~g~l---e~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 520 (686)
T PRK15429 450 HERGAFTG--ASAQRIGRF---ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 520 (686)
T ss_pred cccccccc--cccchhhHH---HhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCC
Confidence 11100000 001111112 1233567999999776555555554444221 134688888864
No 381
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=93.94 E-value=0.2 Score=56.75 Aligned_cols=133 Identities=14% Similarity=0.107 Sum_probs=71.5
Q ss_pred ccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHH
Q 000692 170 AVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILES 249 (1349)
Q Consensus 170 ~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 249 (1349)
.++|+...+.++.+.+..... ...-|.|+|-.|+||+++|+.++...... -...+.|++..... ..+...+...
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~~s~r~-~~pfv~v~c~~~~~-~~~~~~lfg~ 80 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHYLSSRW-QGPFISLNCAALNE-NLLDSELFGH 80 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhCCcc-CCCeEEEeCCCCCH-HHHHHHHccc
Confidence 488998888888887765432 23467899999999999999987543211 22344556655322 2222222211
Q ss_pred ccCCCCCcCChHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHHhhccCCCCC-----------CCcEEEEEecc
Q 000692 250 ITLSPCELKDLNSVQLKLKEALFKKKYLIVLDDVWSKSYDLWQALKSPFMVGA-----------PDSRIIVTTRS 313 (1349)
Q Consensus 250 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~-----------~gs~ilvTtR~ 313 (1349)
-....... .......+. ....-.|+||||..-.......+...+..+. ...+||+||..
T Consensus 81 ~~~~~~g~--~~~~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 81 EAGAFTGA--QKRHPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred cccccCCc--ccccCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch
Confidence 10000000 000011111 2234568899997665555555554443211 23688887764
No 382
>PLN02924 thymidylate kinase
Probab=93.92 E-value=0.17 Score=53.45 Aligned_cols=55 Identities=18% Similarity=0.157 Sum_probs=35.5
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHH
Q 000692 194 SSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILE 248 (1349)
Q Consensus 194 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 248 (1349)
.....|+|-|..|+||||+|+.+++..+.+++..+.+-.........+..++++.
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~~~~~~g~~ir~~l~ 68 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLS 68 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCCCCChHHHHHHHHHh
Confidence 3457899999999999999999998876555554333222222233444444443
No 383
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.89 E-value=0.042 Score=45.71 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=20.5
Q ss_pred EEEEEccCCChHHHHHHHHHcCC
Q 000692 198 LIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 198 vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
+|+|.|..|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998864
No 384
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=93.88 E-value=0.32 Score=46.71 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=31.5
Q ss_pred EEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEec
Q 000692 197 RLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVS 234 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~ 234 (1349)
--+.|+|-||+||+++.+.+|...-.++|...+||+..
T Consensus 21 iK~vivGng~VGKssmiqryCkgifTkdykktIgvdfl 58 (246)
T KOG4252|consen 21 IKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFL 58 (246)
T ss_pred EEEEEECCCccchHHHHHHHhccccccccccccchhhh
Confidence 35679999999999999999987666668888998754
No 385
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.85 E-value=0.034 Score=54.22 Aligned_cols=36 Identities=28% Similarity=0.139 Sum_probs=26.3
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEE
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVC 232 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~ 232 (1349)
..||-|.|.+|+||||||+++.+..... -..+++++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~-g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFAR-GIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT-TS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEec
Confidence 3689999999999999999998875433 23344444
No 386
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.83 E-value=0.3 Score=56.26 Aligned_cols=86 Identities=15% Similarity=0.125 Sum_probs=51.8
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccc-cHHHHHHHHHHHccCCCC-----CcCC--hHH----
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDF-DVLRISKVILESITLSPC-----ELKD--LNS---- 262 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~~~~--~~~---- 262 (1349)
....++|+|..|+|||||++.++.... .+.++.+-+.+.. .+.++...++..-..... ..++ ...
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~~---~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGTT---ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCCC---CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 346899999999999999999886432 3555556665543 344555555433221111 1111 111
Q ss_pred -HHHHHHHHh--cCCceEEEEeCC
Q 000692 263 -VQLKLKEAL--FKKKYLIVLDDV 283 (1349)
Q Consensus 263 -~~~~l~~~l--~~~~~LlVlDdv 283 (1349)
.+-.+.+++ +++++|+++||+
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCh
Confidence 122344555 589999999999
No 387
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.81 E-value=0.17 Score=55.20 Aligned_cols=42 Identities=19% Similarity=0.380 Sum_probs=31.4
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEeccc
Q 000692 194 SSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDD 236 (1349)
Q Consensus 194 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~ 236 (1349)
+...++.|.|.+|+|||++|.+++.....+ -..+++++...+
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~-Ge~vlyis~Ee~ 75 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASR-GNPVLFVTVESP 75 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEEecCC
Confidence 456799999999999999999986643212 346778887643
No 388
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.80 E-value=0.12 Score=47.86 Aligned_cols=50 Identities=14% Similarity=0.213 Sum_probs=35.0
Q ss_pred ccccchhhHHHHHHHHhccCC-CCCCCcEEEEEEccCCChHHHHHHHHHcC
Q 000692 170 AVYGRDEDKARVLKIVLKIDP-NDDSSFRLIPIVGMGGIGKTTLAREVYND 219 (1349)
Q Consensus 170 ~~~Gr~~~~~~l~~~l~~~~~-~~~~~~~vv~i~G~gGiGKTtLa~~~~~~ 219 (1349)
.++|..-..+.+.+.+.+--. ..+..+-|++.+|..|+|||.+|+.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 466666555555555543211 13467789999999999999999888876
No 389
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.79 E-value=0.35 Score=59.84 Aligned_cols=86 Identities=22% Similarity=0.294 Sum_probs=53.9
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcc-cCceEEEEeccccc--HHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhc
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVED-FDPKAWVCVSDDFD--VLRISKVILESITLSPCELKDLNSVQLKLKEALF 272 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 272 (1349)
.+|++++|+.|+||||.+.+++....... ...+..++.. .+. ..+-++...+.++.+.....+..++...+.+ ++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-LG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-hc
Confidence 57999999999999999999887653222 2345555433 333 3455566666666554444455565555543 34
Q ss_pred CCceEEEEeCCC
Q 000692 273 KKKYLIVLDDVW 284 (1349)
Q Consensus 273 ~~~~LlVlDdv~ 284 (1349)
++ =+|++|-+-
T Consensus 263 ~~-D~VLIDTAG 273 (767)
T PRK14723 263 DK-HLVLIDTVG 273 (767)
T ss_pred CC-CEEEEeCCC
Confidence 44 477788774
No 390
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.78 E-value=0.26 Score=57.00 Aligned_cols=86 Identities=15% Similarity=0.094 Sum_probs=48.4
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCC-----CC-CcCChH-----HHH
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLS-----PC-ELKDLN-----SVQ 264 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-----~~-~~~~~~-----~~~ 264 (1349)
...++|+|..|+|||||++.++..... ...++|..-.+..++.++....+...... .. +..... ...
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~p--d~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a 242 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADAF--DTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTA 242 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC--CeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 468999999999999999988765331 22445554333444444444333322111 11 111111 112
Q ss_pred HHHHHHh--cCCceEEEEeCC
Q 000692 265 LKLKEAL--FKKKYLIVLDDV 283 (1349)
Q Consensus 265 ~~l~~~l--~~~~~LlVlDdv 283 (1349)
-.+.+++ +++.+|+++||+
T Consensus 243 ~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 243 TAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHcCCCEEEeccch
Confidence 2334444 478999999999
No 391
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.73 E-value=0.22 Score=49.80 Aligned_cols=119 Identities=19% Similarity=0.185 Sum_probs=62.4
Q ss_pred EEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCce
Q 000692 197 RLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKKKY 276 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 276 (1349)
.+++|+|..|.|||||++.++..... ....+++........ ........+....+ ...-+...-.+...+...+-
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~--~~G~i~~~~~~~~~~--~~~~~~~~i~~~~q-lS~G~~~r~~l~~~l~~~~~ 100 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKP--TSGEILIDGKDIAKL--PLEELRRRIGYVPQ-LSGGQRQRVALARALLLNPD 100 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEcccC--CHHHHHhceEEEee-CCHHHHHHHHHHHHHhcCCC
Confidence 68999999999999999999876432 334444432211110 00111111211111 11122223335566667788
Q ss_pred EEEEeCCCCC-ChhhHHHhhccCCC-CCCCcEEEEEecchhHHHhh
Q 000692 277 LIVLDDVWSK-SYDLWQALKSPFMV-GAPDSRIIVTTRSVDVALTM 320 (1349)
Q Consensus 277 LlVlDdv~~~-~~~~~~~~~~~l~~-~~~gs~ilvTtR~~~v~~~~ 320 (1349)
++++|+.... +......+...+.. ...+..++++|.+.......
T Consensus 101 i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 101 LLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 9999998542 22222233222221 11256788888877666543
No 392
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.73 E-value=0.2 Score=56.20 Aligned_cols=88 Identities=15% Similarity=0.117 Sum_probs=55.5
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCC-CcccCceEEEEecccc-cHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKS-VEDFDPKAWVCVSDDF-DVLRISKVILESITLSPCELKDLNSVQLKLKEALFK 273 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~-~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 273 (1349)
.++|+++|+.|+||||-...++.++. ..+-..+..|+...-. ...+-++.-++-++.+-....+..++...+... ++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l-~~ 281 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL-RD 281 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-hc
Confidence 68999999999999876555555443 2223456666654322 234555666777777766667777776666543 34
Q ss_pred CceEEEEeCCCC
Q 000692 274 KKYLIVLDDVWS 285 (1349)
Q Consensus 274 ~~~LlVlDdv~~ 285 (1349)
. =+|.+|-+..
T Consensus 282 ~-d~ILVDTaGr 292 (407)
T COG1419 282 C-DVILVDTAGR 292 (407)
T ss_pred C-CEEEEeCCCC
Confidence 4 4556676644
No 393
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.73 E-value=0.068 Score=55.60 Aligned_cols=22 Identities=32% Similarity=0.274 Sum_probs=20.2
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 000692 197 RLIPIVGMGGIGKTTLAREVYN 218 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~ 218 (1349)
++++|+|+.|.||||+++.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 6999999999999999998864
No 394
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.72 E-value=0.53 Score=49.84 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=22.1
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
..+++|+|..|+|||||++.++...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999998753
No 395
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.71 E-value=0.51 Score=49.65 Aligned_cols=25 Identities=36% Similarity=0.385 Sum_probs=22.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
..+++|+|..|.|||||++.++...
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998753
No 396
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.71 E-value=0.058 Score=56.04 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=22.3
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
..+|+|.|++|+||||+|+.++...
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4699999999999999999998653
No 397
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.71 E-value=0.64 Score=48.95 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=21.6
Q ss_pred EEEEEEccCCChHHHHHHHHHcCC
Q 000692 197 RLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
.+++|+|..|.|||||++.++.-.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999998753
No 398
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.71 E-value=0.18 Score=56.73 Aligned_cols=102 Identities=16% Similarity=0.188 Sum_probs=54.4
Q ss_pred EEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCce
Q 000692 197 RLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKKKY 276 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 276 (1349)
..+.++|..|+|||.||.++++....+++ .++++++.+ +...+...-. . ...+... .+ +.+. .-=
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~-~V~y~t~~~------l~~~l~~~~~-~--~~~~~~~---~~-~~l~-~~D 248 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGK-SVIYRTADE------LIEILREIRF-N--NDKELEE---VY-DLLI-NCD 248 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCC-eEEEEEHHH------HHHHHHHHHh-c--cchhHHH---HH-HHhc-cCC
Confidence 56899999999999999999987643333 456665432 2333322111 0 0111111 12 2222 234
Q ss_pred EEEEeCCCCCChhhHHH--hhccCCC-CCCCcEEEEEecc
Q 000692 277 LIVLDDVWSKSYDLWQA--LKSPFMV-GAPDSRIIVTTRS 313 (1349)
Q Consensus 277 LlVlDdv~~~~~~~~~~--~~~~l~~-~~~gs~ilvTtR~ 313 (1349)
|||+||+.......|.. +...+-. ...+-.+||||..
T Consensus 249 LLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 249 LLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred EEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 89999996554344432 2222211 1234568888874
No 399
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=93.71 E-value=0.8 Score=51.33 Aligned_cols=49 Identities=18% Similarity=0.106 Sum_probs=33.1
Q ss_pred eEeCCCCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHH
Q 000692 325 YCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAA 374 (1349)
Q Consensus 325 ~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 374 (1349)
.+++++++.+|+..++....-..--.. ...-+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~-~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRS-RVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcccc-CCCCHHHHHHHHHhcCCCHHHh
Confidence 689999999999999988763322211 1222445566677779998644
No 400
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=93.71 E-value=0.42 Score=52.05 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.2
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
..+++|+|..|.|||||++.++...
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999998653
No 401
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.66 E-value=0.28 Score=56.96 Aligned_cols=89 Identities=20% Similarity=0.201 Sum_probs=54.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEeccc-ccHHHHHHHHHHHccCCCC-------CcCChHH----
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDD-FDVLRISKVILESITLSPC-------ELKDLNS---- 262 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~-------~~~~~~~---- 262 (1349)
..+.++|.|..|+|||||+.+++.......-+.++++-+.+. ..+.++.+.+...=..... +.....+
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 346789999999999999998766543221235667766554 3455666666553221111 1111111
Q ss_pred -HHHHHHHHh---cCCceEEEEeCC
Q 000692 263 -VQLKLKEAL---FKKKYLIVLDDV 283 (1349)
Q Consensus 263 -~~~~l~~~l---~~~~~LlVlDdv 283 (1349)
..-.+.+++ +++++|+++|++
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecch
Confidence 223355555 679999999999
No 402
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.66 E-value=0.0026 Score=63.68 Aligned_cols=86 Identities=17% Similarity=0.201 Sum_probs=72.1
Q ss_pred ccCCCcccEEEeccccccccCccccCCCccceEEecCCCCcccccccccCCCCcEEEecCccCCCcCchhhhccccccEE
Q 000692 577 LPKFKKLRVLSLRRYYITEVPISIGCLRHLRYLNFSDTKIKCLPESVTSLLNLEILILRDCLHLLKLPSSIGNLVKLLHL 656 (1349)
Q Consensus 577 ~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L 656 (1349)
+..++..++||++.|.+..+-..|..+..|..|+++.|.|..+|+.++.+..+..+++..| .....|.+++++++++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcchh
Confidence 4567788889999888887777788888888899998888888988888888888888776 678888888888888888
Q ss_pred EecCCCc
Q 000692 657 DIEGANL 663 (1349)
Q Consensus 657 ~l~~~~~ 663 (1349)
++.++.+
T Consensus 117 e~k~~~~ 123 (326)
T KOG0473|consen 117 EQKKTEF 123 (326)
T ss_pred hhccCcc
Confidence 8887763
No 403
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.66 E-value=0.74 Score=49.17 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.5
Q ss_pred cEEEEEEccCCChHHHHHHHHHcC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYND 219 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~ 219 (1349)
..+++|+|..|.|||||++.++..
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 368999999999999999998764
No 404
>CHL00206 ycf2 Ycf2; Provisional
Probab=93.65 E-value=0.5 Score=63.12 Aligned_cols=29 Identities=28% Similarity=0.365 Sum_probs=25.1
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcCCCC
Q 000692 194 SSFRLIPIVGMGGIGKTTLAREVYNDKSV 222 (1349)
Q Consensus 194 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~ 222 (1349)
..++-|.++|++|.|||.||+++|.+..+
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~V 1656 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYV 1656 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCC
Confidence 34678899999999999999999998654
No 405
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.63 E-value=0.52 Score=51.04 Aligned_cols=125 Identities=13% Similarity=0.085 Sum_probs=64.3
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCc-c---cCc--eEEEEec----ccccHHHHH--------------HHHHHHcc
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVE-D---FDP--KAWVCVS----DDFDVLRIS--------------KVILESIT 251 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~-~---f~~--~~wv~~~----~~~~~~~~~--------------~~i~~~l~ 251 (1349)
..+++|+|..|+|||||++.++...... + ++. +.++.-. ...++.+.+ .++++.++
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~ 104 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQ 104 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcC
Confidence 4689999999999999999998764321 1 222 2222111 011222222 12233332
Q ss_pred CCCC-----CcCChHH-HHHHHHHHhcCCceEEEEeCCCCC-ChhhHHHhhccCCCC--CCCcEEEEEecchhHHHhh
Q 000692 252 LSPC-----ELKDLNS-VQLKLKEALFKKKYLIVLDDVWSK-SYDLWQALKSPFMVG--APDSRIIVTTRSVDVALTM 320 (1349)
Q Consensus 252 ~~~~-----~~~~~~~-~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~~~~~l~~~--~~gs~ilvTtR~~~v~~~~ 320 (1349)
.... ..-+..+ ..-.+...+..++=++++|+.-.. +......+...+... ..|..||++|.+...+..+
T Consensus 105 l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~ 182 (246)
T cd03237 105 IEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYL 182 (246)
T ss_pred CHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 2110 0111122 223456677788899999997442 222222232222221 2367789999887666543
No 406
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=93.62 E-value=0.64 Score=52.24 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
..+++|.|..|.|||||.+.++...
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl~ 52 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGYL 52 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3699999999999999999998653
No 407
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.62 E-value=0.23 Score=56.56 Aligned_cols=108 Identities=14% Similarity=0.147 Sum_probs=58.2
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcC
Q 000692 194 SSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFK 273 (1349)
Q Consensus 194 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 273 (1349)
..++-+.|||..|.|||.|.-.+|+....+. ..+ ....+...++-+.+..-......+.. +.+.+.+
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~-k~R--------~HFh~Fm~~vh~~l~~~~~~~~~l~~----va~~l~~ 126 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKR-KRR--------VHFHEFMLDVHSRLHQLRGQDDPLPQ----VADELAK 126 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccc-ccc--------ccccHHHHHHHHHHHHHhCCCccHHH----HHHHHHh
Confidence 3567899999999999999999998765421 000 01122333333333322222233333 3445567
Q ss_pred CceEEEEeCCCCCChhh---HHHhhccCCCCCCCcEEEEEecchhHH
Q 000692 274 KKYLIVLDDVWSKSYDL---WQALKSPFMVGAPDSRIIVTTRSVDVA 317 (1349)
Q Consensus 274 ~~~LlVlDdv~~~~~~~---~~~~~~~l~~~~~gs~ilvTtR~~~v~ 317 (1349)
+..||.||...=.+..+ ...+...+. ..|. |||+|.+....
T Consensus 127 ~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gv-vlVaTSN~~P~ 170 (362)
T PF03969_consen 127 ESRLLCFDEFQVTDIADAMILKRLFEALF--KRGV-VLVATSNRPPE 170 (362)
T ss_pred cCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCC-EEEecCCCChH
Confidence 77899999974443222 122222222 2444 56666554443
No 408
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=93.60 E-value=0.04 Score=55.47 Aligned_cols=42 Identities=24% Similarity=0.201 Sum_probs=29.5
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccc
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDF 237 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~ 237 (1349)
..++.+.|+.|+|||.+|+.++...........+-++++.-.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~ 44 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYS 44 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccc
Confidence 468899999999999999999876542113455555655433
No 409
>PRK06547 hypothetical protein; Provisional
Probab=93.60 E-value=0.092 Score=52.99 Aligned_cols=28 Identities=32% Similarity=0.363 Sum_probs=24.2
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcCCC
Q 000692 194 SSFRLIPIVGMGGIGKTTLAREVYNDKS 221 (1349)
Q Consensus 194 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~ 221 (1349)
....+|+|.|..|+||||+|+.+++...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4568999999999999999999987643
No 410
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.59 E-value=0.23 Score=56.88 Aligned_cols=82 Identities=21% Similarity=0.226 Sum_probs=49.8
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCC-----CcCChHHHHHHHHH
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPC-----ELKDLNSVQLKLKE 269 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 269 (1349)
...++.|.|.+|+|||||+.+++...... -..++|++..+. ..++. .-++.++.... ...+.+++.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~-g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~- 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKR-GGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIE- 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH-
Confidence 45799999999999999999988754322 346778776543 33332 22345543222 1223444433332
Q ss_pred HhcCCceEEEEeCC
Q 000692 270 ALFKKKYLIVLDDV 283 (1349)
Q Consensus 270 ~l~~~~~LlVlDdv 283 (1349)
+.+.-+||+|.+
T Consensus 156 --~~~~~lVVIDSI 167 (372)
T cd01121 156 --ELKPDLVIIDSI 167 (372)
T ss_pred --hcCCcEEEEcch
Confidence 246678899987
No 411
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=93.59 E-value=0.76 Score=49.23 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=22.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
..+++|+|..|.|||||++.++.-.
T Consensus 34 Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 34 GECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3599999999999999999998653
No 412
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.59 E-value=0.53 Score=50.24 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=22.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
..+++|+|..|+|||||++.++.-.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998653
No 413
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.58 E-value=0.051 Score=56.16 Aligned_cols=32 Identities=28% Similarity=0.376 Sum_probs=26.0
Q ss_pred CCCCcEEEEEEccCCChHHHHHHHHHcCCCCc
Q 000692 192 DDSSFRLIPIVGMGGIGKTTLAREVYNDKSVE 223 (1349)
Q Consensus 192 ~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~ 223 (1349)
...++.+|.++||+|.||||+.++++.....+
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~ 46 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAK 46 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHHHHhhc
Confidence 34567788999999999999999998765443
No 414
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.58 E-value=0.34 Score=52.66 Aligned_cols=90 Identities=13% Similarity=0.147 Sum_probs=49.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccc-cHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhc-C
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDF-DVLRISKVILESITLSPCELKDLNSVQLKLKEALF-K 273 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~ 273 (1349)
..+++++|.+|+||||++..++.....+ -..+.+++..... ....-++...+.++.+.....+...+.+.+...-+ +
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~-~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGK-KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 3689999999999999999887654221 1234555544221 12222233333344332222344444444433212 3
Q ss_pred CceEEEEeCCCCC
Q 000692 274 KKYLIVLDDVWSK 286 (1349)
Q Consensus 274 ~~~LlVlDdv~~~ 286 (1349)
+.=++++|..-..
T Consensus 154 ~~D~ViIDt~Gr~ 166 (270)
T PRK06731 154 RVDYILIDTAGKN 166 (270)
T ss_pred CCCEEEEECCCCC
Confidence 4578899988543
No 415
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.58 E-value=0.18 Score=50.93 Aligned_cols=119 Identities=16% Similarity=0.024 Sum_probs=60.9
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecc---cccHHHHHHHH--HHHc--cCCC-CCcCCh-------
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSD---DFDVLRISKVI--LESI--TLSP-CELKDL------- 260 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i--~~~l--~~~~-~~~~~~------- 260 (1349)
...|-|+|-.|-||||.|..++.+.-..++. +..+.+-. .......++.+ +.-. +... ....+.
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~-V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~ 100 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKK-VGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAA 100 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCe-EEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHH
Confidence 3588999999999999998877654322232 22222211 22223333321 0000 1100 000111
Q ss_pred HHHHHHHHHHhcC-CceEEEEeCCCC---CChhhHHHhhccCCCCCCCcEEEEEecchh
Q 000692 261 NSVQLKLKEALFK-KKYLIVLDDVWS---KSYDLWQALKSPFMVGAPDSRIIVTTRSVD 315 (1349)
Q Consensus 261 ~~~~~~l~~~l~~-~~~LlVlDdv~~---~~~~~~~~~~~~l~~~~~gs~ilvTtR~~~ 315 (1349)
.+.....++.+.. +-=++|||.+-. ...-..+++...+.....+..||+|-|+..
T Consensus 101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1122334455544 445999999822 112234455555555556789999999753
No 416
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.58 E-value=0.047 Score=30.81 Aligned_cols=16 Identities=38% Similarity=0.800 Sum_probs=5.6
Q ss_pred ccceEEecCCCCcccc
Q 000692 605 HLRYLNFSDTKIKCLP 620 (1349)
Q Consensus 605 ~Lr~L~Ls~~~i~~lp 620 (1349)
+|+.|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3444444444444443
No 417
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.57 E-value=0.059 Score=56.83 Aligned_cols=27 Identities=41% Similarity=0.527 Sum_probs=23.4
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcCC
Q 000692 194 SSFRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 194 ~~~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
+...+|+|+|+.|+||||||+.++...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345899999999999999999998653
No 418
>PRK04328 hypothetical protein; Provisional
Probab=93.51 E-value=0.24 Score=53.74 Aligned_cols=43 Identities=14% Similarity=0.267 Sum_probs=32.6
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccc
Q 000692 194 SSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDF 237 (1349)
Q Consensus 194 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~ 237 (1349)
+...++.|.|.+|+|||++|.++....- +.-..++|++..+.+
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~-~~ge~~lyis~ee~~ 63 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGL-QMGEPGVYVALEEHP 63 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHH-hcCCcEEEEEeeCCH
Confidence 3467999999999999999999766532 224568888877653
No 419
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.48 E-value=0.063 Score=56.79 Aligned_cols=27 Identities=37% Similarity=0.528 Sum_probs=23.9
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcCC
Q 000692 194 SSFRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 194 ~~~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
.+..+|+|.|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356899999999999999999998764
No 420
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=93.48 E-value=0.64 Score=50.73 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.8
Q ss_pred cEEEEEEccCCChHHHHHHHHHcC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYND 219 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~ 219 (1349)
..+++|+|..|.|||||++.++..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 27 GEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 358999999999999999999875
No 421
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=93.44 E-value=0.63 Score=49.74 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=22.1
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
..+++|.|..|+|||||++.++...
T Consensus 48 Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 48 GERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998754
No 422
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.43 E-value=0.24 Score=62.63 Aligned_cols=24 Identities=25% Similarity=0.175 Sum_probs=20.9
Q ss_pred cEEEEEEccCCChHHHHHHHHHcC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYND 219 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~ 219 (1349)
.++++|+|+.|.||||+.+.+...
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHH
Confidence 478999999999999999988653
No 423
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.40 E-value=0.52 Score=48.99 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.6
Q ss_pred cEEEEEEccCCChHHHHHHHHHcC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYND 219 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~ 219 (1349)
..+++|+|..|.|||||++.++..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 369999999999999999999863
No 424
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.39 E-value=0.12 Score=51.43 Aligned_cols=25 Identities=40% Similarity=0.577 Sum_probs=21.2
Q ss_pred EEEEEEccCCChHHHHHHHHHcCCC
Q 000692 197 RLIPIVGMGGIGKTTLAREVYNDKS 221 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~~~~ 221 (1349)
..|.+.|.+|+||||+|++++...+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHH
Confidence 3578899999999999999887643
No 425
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.39 E-value=0.31 Score=50.28 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=22.9
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCC
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
...++.|.|.+|+||||+|+.+....
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l 42 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKL 42 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998754
No 426
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.38 E-value=0.65 Score=49.27 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.5
Q ss_pred cEEEEEEccCCChHHHHHHHHHcC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYND 219 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~ 219 (1349)
..+++|+|..|+|||||++.++.-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998764
No 427
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=93.37 E-value=0.61 Score=50.38 Aligned_cols=25 Identities=24% Similarity=0.297 Sum_probs=22.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
..+++|+|..|.|||||++.++...
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 27 GEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3699999999999999999998653
No 428
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.37 E-value=0.061 Score=52.89 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=19.9
Q ss_pred EEEEEccCCChHHHHHHHHHcC
Q 000692 198 LIPIVGMGGIGKTTLAREVYND 219 (1349)
Q Consensus 198 vv~i~G~gGiGKTtLa~~~~~~ 219 (1349)
+|.+.|++|+||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998864
No 429
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.36 E-value=0.29 Score=56.52 Aligned_cols=87 Identities=22% Similarity=0.285 Sum_probs=48.4
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCCCCcc-cCceEEEEeccc-ccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhc
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDKSVED-FDPKAWVCVSDD-FDVLRISKVILESITLSPCELKDLNSVQLKLKEALF 272 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 272 (1349)
...+++++|..|+||||++..++....... .+.+.++..... ....+-+....+.++.+.....+..+....+.. ++
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~-l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHE-LR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHH-hc
Confidence 347999999999999999998876432111 234444443321 122333445555555544444444444433332 33
Q ss_pred CCceEEEEeCC
Q 000692 273 KKKYLIVLDDV 283 (1349)
Q Consensus 273 ~~~~LlVlDdv 283 (1349)
+ .-++++|-+
T Consensus 269 ~-~d~VLIDTa 278 (420)
T PRK14721 269 G-KHMVLIDTV 278 (420)
T ss_pred C-CCEEEecCC
Confidence 3 345677766
No 430
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.36 E-value=0.32 Score=52.31 Aligned_cols=88 Identities=20% Similarity=0.231 Sum_probs=54.5
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCC--cc-cCceEEEEecccc-cHHHHHHHHHHHccCCCC-----CcC--ChHH--
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSV--ED-FDPKAWVCVSDDF-DVLRISKVILESITLSPC-----ELK--DLNS-- 262 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~--~~-f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~~~--~~~~-- 262 (1349)
.+.++|.|-.|+|||+|+.+++++... +. -+.++++-+.+.. ...++...+.+.=..... ..+ ...+
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 457899999999999999998877541 12 4677888887654 455566555543111111 111 1111
Q ss_pred ---HHHHHHHHhc---CCceEEEEeCC
Q 000692 263 ---VQLKLKEALF---KKKYLIVLDDV 283 (1349)
Q Consensus 263 ---~~~~l~~~l~---~~~~LlVlDdv 283 (1349)
..-.+.++++ ++++|+++||+
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 1223445552 68999999998
No 431
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.35 E-value=0.21 Score=58.34 Aligned_cols=89 Identities=20% Similarity=0.190 Sum_probs=55.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccc-cHHHHHHHHHHHccCCCC-------CcCChH-----
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDF-DVLRISKVILESITLSPC-------ELKDLN----- 261 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-------~~~~~~----- 261 (1349)
+.+.++|+|.+|+|||||+.++++......-+.++++-+.+.. .+.++...+...-..... +.....
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 3467899999999999999888876543235677777776543 455566655543211111 111111
Q ss_pred HHHHHHHHHh---cCCceEEEEeCC
Q 000692 262 SVQLKLKEAL---FKKKYLIVLDDV 283 (1349)
Q Consensus 262 ~~~~~l~~~l---~~~~~LlVlDdv 283 (1349)
..+..+.+++ +++++|+++|++
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccc
Confidence 1223345555 379999999999
No 432
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=93.35 E-value=2.8 Score=46.53 Aligned_cols=155 Identities=10% Similarity=0.035 Sum_probs=86.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCC--------CCcc-cCceEEEEe-cccccHHHHHHHHHHHccCCCCCcCChHHHHH
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDK--------SVED-FDPKAWVCV-SDDFDVLRISKVILESITLSPCELKDLNSVQL 265 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~--------~~~~-f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 265 (1349)
.++..++|..|.||+++|..+++.. .... .+-..++.. +.....+++ +++.+.+...+
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~I-r~l~~~~~~~~----------- 85 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEF-LSAINKLYFSS----------- 85 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHH-HHHHHHhccCC-----------
Confidence 4677799999999999999987653 1111 112333321 111222222 22333322110
Q ss_pred HHHHHhcCCceEEEEeCCCCCChhhHHHhhccCCCCCCCcEEEEEecc-hhHHHhhc-CCceEeCCCCChhhHHHHHHHH
Q 000692 266 KLKEALFKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRS-VDVALTMG-SGGYCELKLLSDDDCWSVFVKH 343 (1349)
Q Consensus 266 ~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~-~~v~~~~~-~~~~~~l~~L~~~~~~~l~~~~ 343 (1349)
.-.+++=++|+|++..-.......+...+-.-.+++.+|++|.+ ..+...+. ....+++.++++++..+.+...
T Consensus 86 ----~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~ 161 (299)
T PRK07132 86 ----FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK 161 (299)
T ss_pred ----cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc
Confidence 01247778889998665555666777766655566777765543 33333322 2357899999999988777643
Q ss_pred HhcCCCCCCchhHHHHHHHHHHHhCCChHHHHH
Q 000692 344 AFESRDAGTHENLESIRQKVVEKCKGLPLAARA 376 (1349)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 376 (1349)
+ . + ++.++.++...+|.=-|+..
T Consensus 162 --~--~---~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 162 --N--K---E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred --C--C---C---hhHHHHHHHHcCCHHHHHHH
Confidence 1 1 1 22344456666663344444
No 433
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=93.35 E-value=0.13 Score=66.22 Aligned_cols=182 Identities=15% Similarity=0.099 Sum_probs=93.9
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcc---cCceEEEEeccccc----HH--HHHHHHHHHccCCCCCcCChHHHHHH
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVED---FDPKAWVCVSDDFD----VL--RISKVILESITLSPCELKDLNSVQLK 266 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~---f~~~~wv~~~~~~~----~~--~~~~~i~~~l~~~~~~~~~~~~~~~~ 266 (1349)
..-+.|+|.+|.||||+...++-....+. =+..+|+.+..... .. .+..-+...+.... ...+....
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~----~~~~~~~~ 297 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQG----IAKQLIEA 297 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccC----CcchhhHH
Confidence 44789999999999999998875443222 24455555431111 11 12222222222211 11222222
Q ss_pred HHHHhcCCceEEEEeCCCCCChhh----HHHhhccCCCCCCCcEEEEEecchhHHHhhcCCceEeCCCCChhhHHHHHH-
Q 000692 267 LKEALFKKKYLIVLDDVWSKSYDL----WQALKSPFMVGAPDSRIIVTTRSVDVALTMGSGGYCELKLLSDDDCWSVFV- 341 (1349)
Q Consensus 267 l~~~l~~~~~LlVlDdv~~~~~~~----~~~~~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~~~~~~~l~~- 341 (1349)
..++++..++++++|.++...... ... ...+.+.-+.+++|+|+|....-........+++..+.++.-.....
T Consensus 298 ~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~-i~~f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~ 376 (824)
T COG5635 298 HQELLKTGKLLLLLDGLDELEPKNQRALIRE-INKFLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILY 376 (824)
T ss_pred HHHHHhccchhhHhhccchhhhhhHHHHHHH-HHHHhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHH
Confidence 357788999999999985532111 111 22223334688999999976555444444455666666655443322
Q ss_pred ----HH---HhcCCCCCCchhHHHHH---HHHHHHhCCChHHHHHHHHhhc
Q 000692 342 ----KH---AFESRDAGTHENLESIR---QKVVEKCKGLPLAARALGGLLR 382 (1349)
Q Consensus 342 ----~~---~~~~~~~~~~~~~~~~~---~~i~~~~~g~PLal~~~~~~l~ 382 (1349)
.. .++............+. ..-.+.....|+++.+.+..-.
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~ 427 (824)
T COG5635 377 QWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQ 427 (824)
T ss_pred HHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhh
Confidence 11 11111111000111111 2233444788999999885554
No 434
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=93.35 E-value=0.84 Score=49.88 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=22.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
..+++|+|..|+|||||++.++.-.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998653
No 435
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.33 E-value=0.11 Score=57.40 Aligned_cols=52 Identities=21% Similarity=0.307 Sum_probs=44.5
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCC
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
..|+|.++.++++++.+.......+.+-+|+.++|+.|.||||||..+-+-.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4799999999999999977655455677999999999999999999986654
No 436
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.32 E-value=0.45 Score=55.22 Aligned_cols=90 Identities=18% Similarity=0.143 Sum_probs=52.0
Q ss_pred CcEEEEEEccCCChHHHHH-HHHHcCCCC------cccCceEEEEecccccHHHHHHHHHHHccC-CCC-----CcCC--
Q 000692 195 SFRLIPIVGMGGIGKTTLA-REVYNDKSV------EDFDPKAWVCVSDDFDVLRISKVILESITL-SPC-----ELKD-- 259 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa-~~~~~~~~~------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-~~~-----~~~~-- 259 (1349)
+.+.++|.|..|+|||+|| ..+.+.... +.-+.++++-+++..+...-+.+.+++-+. ... ..++
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 3467899999999999997 556665421 124567888887765433223333333331 111 1111
Q ss_pred hHH-----HHHHHHHHh--cCCceEEEEeCCC
Q 000692 260 LNS-----VQLKLKEAL--FKKKYLIVLDDVW 284 (1349)
Q Consensus 260 ~~~-----~~~~l~~~l--~~~~~LlVlDdv~ 284 (1349)
..+ ..-.+.+++ +++.+|+|+||+-
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLT 299 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLS 299 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCch
Confidence 111 112334444 5789999999993
No 437
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.25 E-value=0.14 Score=54.28 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=20.8
Q ss_pred EEEEEccCCChHHHHHHHHHcCCC
Q 000692 198 LIPIVGMGGIGKTTLAREVYNDKS 221 (1349)
Q Consensus 198 vv~i~G~gGiGKTtLa~~~~~~~~ 221 (1349)
.|.|+|++|+||||+|+.++....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999987643
No 438
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.23 E-value=0.14 Score=54.20 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=39.8
Q ss_pred CccccchhhHHHHHHHHhccCC-CCCCCcEEEEEEccCCChHHHHHHHHHcCCC
Q 000692 169 PAVYGRDEDKARVLKIVLKIDP-NDDSSFRLIPIVGMGGIGKTTLAREVYNDKS 221 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~-~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~ 221 (1349)
..++|..-..+.|+..+.+--. +...++-+++.+|..|+||.-+|+.+++...
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~ 135 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLY 135 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHH
Confidence 3577877777777776654222 1356788999999999999999999988754
No 439
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.23 E-value=0.11 Score=54.20 Aligned_cols=121 Identities=17% Similarity=0.135 Sum_probs=59.8
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCcCC---hHHHHHHHHHH--
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCELKD---LNSVQLKLKEA-- 270 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~---~~~~~~~l~~~-- 270 (1349)
.+++.|.|+.|.||||+.+.++.-.-.. ....+|.+.. .. -.+...|...++..+..... ...-...+...
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la--~~G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~ 104 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMA--QIGCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILD 104 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHH--HcCCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHHHH
Confidence 3789999999999999998875432110 0111111111 00 01122222222222111111 11111112222
Q ss_pred hcCCceEEEEeCCCCC-Chhh----HHHhhccCCCCCCCcEEEEEecchhHHHhhcC
Q 000692 271 LFKKKYLIVLDDVWSK-SYDL----WQALKSPFMVGAPDSRIIVTTRSVDVALTMGS 322 (1349)
Q Consensus 271 l~~~~~LlVlDdv~~~-~~~~----~~~~~~~l~~~~~gs~ilvTtR~~~v~~~~~~ 322 (1349)
+..++-|+++|..... +..+ ...+...+. ..|..+|+||.+.+++..+..
T Consensus 105 ~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 105 YADGDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIAAILGN 159 (204)
T ss_pred hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhhc
Confidence 2357889999998442 1111 122333333 237899999999988876653
No 440
>PRK06762 hypothetical protein; Provisional
Probab=93.22 E-value=0.064 Score=54.34 Aligned_cols=25 Identities=40% Similarity=0.502 Sum_probs=22.2
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
..+|.|.|+.|+||||+|+.++...
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998764
No 441
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.21 E-value=0.22 Score=54.11 Aligned_cols=28 Identities=29% Similarity=0.284 Sum_probs=24.3
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcCCC
Q 000692 194 SSFRLIPIVGMGGIGKTTLAREVYNDKS 221 (1349)
Q Consensus 194 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~ 221 (1349)
.+..+|.|.|.+|+|||||+..+.....
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~ 129 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLK 129 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3578999999999999999999887643
No 442
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=93.21 E-value=0.82 Score=49.50 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.2
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
..+++|+|..|.|||||++.++...
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 29 GKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred CCEEEEEeCCCCCHHHHHHHHhccC
Confidence 3699999999999999999998753
No 443
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.18 E-value=0.98 Score=48.57 Aligned_cols=24 Identities=38% Similarity=0.412 Sum_probs=21.6
Q ss_pred EEEEEEccCCChHHHHHHHHHcCC
Q 000692 197 RLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
.+++|+|..|.|||||++.++...
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 589999999999999999998654
No 444
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.18 E-value=0.28 Score=52.74 Aligned_cols=86 Identities=21% Similarity=0.193 Sum_probs=48.5
Q ss_pred CcEEEEEEccCCChHHHHH-HHHHcCCCCcccCce-EEEEecccc-cHHHHHHHHHHHccCCC-------CCcCChHH--
Q 000692 195 SFRLIPIVGMGGIGKTTLA-REVYNDKSVEDFDPK-AWVCVSDDF-DVLRISKVILESITLSP-------CELKDLNS-- 262 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa-~~~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~~-- 262 (1349)
+.+.++|+|..|+|||+|| ..+++.. .-+.+ +++-+.+.. ...++.+.+.+.=.... .+.....+
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~---~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK---GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc---CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 3467899999999999996 5565542 13333 566665543 45556655554321111 01111111
Q ss_pred ---HHHHHHHHh--cCCceEEEEeCC
Q 000692 263 ---VQLKLKEAL--FKKKYLIVLDDV 283 (1349)
Q Consensus 263 ---~~~~l~~~l--~~~~~LlVlDdv 283 (1349)
..-.+.+++ +++.+|+|+||+
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~Dsl 170 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcCh
Confidence 112233333 578999999999
No 445
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.16 E-value=0.35 Score=54.22 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=23.8
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCCC
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDKS 221 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~~ 221 (1349)
...+++++|++|+||||++..++....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 468999999999999999999987654
No 446
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.12 E-value=0.013 Score=60.56 Aligned_cols=104 Identities=21% Similarity=0.223 Sum_probs=81.3
Q ss_pred CCCcccEEEeccccccccCccccCCCccceEEecCCCCcccccccccCCCCcEEEecCccCCCcCch--hhhccccccEE
Q 000692 579 KFKKLRVLSLRRYYITEVPISIGCLRHLRYLNFSDTKIKCLPESVTSLLNLEILILRDCLHLLKLPS--SIGNLVKLLHL 656 (1349)
Q Consensus 579 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~--~i~~L~~L~~L 656 (1349)
.+.+.+-|++-||.++.|. -+.+++.|++|.||-|.|+.|- .+..+++|+.|+|+.| .+..+-+ .+.+|++|+.|
T Consensus 17 dl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhH
Confidence 4566777888888888763 3568999999999999999984 4889999999999998 5555543 36889999999
Q ss_pred EecCCCccccCccc-----cccCcCCCCCCeeEe
Q 000692 657 DIEGANLLSELPLR-----MKELKCLQTLTNFIV 685 (1349)
Q Consensus 657 ~l~~~~~~~~~p~~-----i~~L~~L~~L~~~~~ 685 (1349)
-|..|...+.-+.. +.-|++|+.|+...+
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~V 127 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPV 127 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhccCccc
Confidence 99988755555433 566889999976544
No 447
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.11 E-value=0.22 Score=61.69 Aligned_cols=84 Identities=17% Similarity=0.114 Sum_probs=56.3
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCC-----CcCChHHHHHHHH
Q 000692 194 SSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPC-----ELKDLNSVQLKLK 268 (1349)
Q Consensus 194 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 268 (1349)
+..+++-|+|.+|+||||||.+++...... -..++|++..+.++.. .+++++.... .....++....+.
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~a~~~-G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVANAQAA-GGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 456899999999999999998876543212 3567899988777742 5666665432 2233444555555
Q ss_pred HHhc-CCceEEEEeCC
Q 000692 269 EALF-KKKYLIVLDDV 283 (1349)
Q Consensus 269 ~~l~-~~~~LlVlDdv 283 (1349)
+.++ ++.-|||+|-+
T Consensus 132 ~lv~~~~~~LVVIDSI 147 (790)
T PRK09519 132 MLIRSGALDIVVIDSV 147 (790)
T ss_pred HHhhcCCCeEEEEcch
Confidence 5554 45668999988
No 448
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.10 E-value=0.4 Score=56.40 Aligned_cols=87 Identities=16% Similarity=0.206 Sum_probs=48.1
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcc-cCceEEEEeccc-ccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVED-FDPKAWVCVSDD-FDVLRISKVILESITLSPCELKDLNSVQLKLKEALFK 273 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 273 (1349)
.+|++++|+.|+||||++.+++.....+. ...+..|..... ....+-++...+.++.......+..+....+. .+++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~-~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALS-ELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHH-hccC
Confidence 47999999999999999999987653221 223455554321 12233344445555543332233333333332 3344
Q ss_pred CceEEEEeCCC
Q 000692 274 KKYLIVLDDVW 284 (1349)
Q Consensus 274 ~~~LlVlDdv~ 284 (1349)
+ ..+++|-.-
T Consensus 335 ~-d~VLIDTaG 344 (484)
T PRK06995 335 K-HIVLIDTIG 344 (484)
T ss_pred C-CeEEeCCCC
Confidence 4 477788764
No 449
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=93.07 E-value=0.075 Score=54.77 Aligned_cols=118 Identities=15% Similarity=0.097 Sum_probs=55.8
Q ss_pred EEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCC---CcCChHHHHHHHHHHhcC-
Q 000692 198 LIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPC---ELKDLNSVQLKLKEALFK- 273 (1349)
Q Consensus 198 vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~l~~- 273 (1349)
++.|+|..|.||||+.+.+........-.. +|.+.. ..+ ....++...++.... .......-...+...+..
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~--~v~a~~-~~~-~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~ 76 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGS--FVPAES-AEL-PVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNA 76 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCC--Ceeehh-eEe-cccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhC
Confidence 468999999999999999873221000011 111110 000 000011111111110 111122222234444443
Q ss_pred -CceEEEEeCCCCCC-hhhH----HHhhccCCCCCCCcEEEEEecchhHHHhh
Q 000692 274 -KKYLIVLDDVWSKS-YDLW----QALKSPFMVGAPDSRIIVTTRSVDVALTM 320 (1349)
Q Consensus 274 -~~~LlVlDdv~~~~-~~~~----~~~~~~l~~~~~gs~ilvTtR~~~v~~~~ 320 (1349)
++-++++|+.-... ..+- ..+...+.. ..+..+|++|...++....
T Consensus 77 ~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 77 TENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLA 128 (185)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHh
Confidence 88999999985421 1111 122233322 2367899999988776654
No 450
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.06 E-value=0.11 Score=54.62 Aligned_cols=62 Identities=21% Similarity=0.161 Sum_probs=37.9
Q ss_pred hHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcc-cCceEEEEecccccHHHH
Q 000692 177 DKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-FDPKAWVCVSDDFDVLRI 242 (1349)
Q Consensus 177 ~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~ 242 (1349)
+..++++.+.... .+..+|+|.|.+|+|||||..++....+.++ --.++-|+-+.+++--.+
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---S
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcc
Confidence 4556666665432 3468999999999999999999877665443 234555555666654333
No 451
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.03 E-value=0.66 Score=45.96 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=20.2
Q ss_pred EEEEEccCCChHHHHHHHHHcCC
Q 000692 198 LIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 198 vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
++.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 36899999999999999998863
No 452
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=93.03 E-value=0.53 Score=57.20 Aligned_cols=133 Identities=17% Similarity=0.194 Sum_probs=74.8
Q ss_pred CCccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHH
Q 000692 168 EPAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVIL 247 (1349)
Q Consensus 168 ~~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 247 (1349)
...++|+...+.++.+.+..... ....|.|+|..|+|||++|+.+++..... -...+.|++..-.+ ..+.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~-~~p~v~v~c~~~~~--~~~e--- 255 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAASPRA-DKPLVYLNCAALPE--SLAE--- 255 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCCcC-CCCeEEEEcccCCh--HHHH---
Confidence 34689999999888888865432 23578899999999999999998754322 23445666665432 1111
Q ss_pred HHccCCCCC-cCC-hHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHHhhccCCCCC-----------CCcEEEEEecc
Q 000692 248 ESITLSPCE-LKD-LNSVQLKLKEALFKKKYLIVLDDVWSKSYDLWQALKSPFMVGA-----------PDSRIIVTTRS 313 (1349)
Q Consensus 248 ~~l~~~~~~-~~~-~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~-----------~gs~ilvTtR~ 313 (1349)
..+.+.... ... .......+. ....--|+||+|..-..+....+...+..+. ...+||.||..
T Consensus 256 ~~lfG~~~g~~~ga~~~~~g~~~---~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 256 SELFGHVKGAFTGAISNRSGKFE---LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred HHhcCccccccCCCcccCCcchh---hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 122111100 000 000000111 1233457899997765555555555443221 24588888864
No 453
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.03 E-value=0.39 Score=55.56 Aligned_cols=86 Identities=19% Similarity=0.174 Sum_probs=51.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccc-cHHHHHHHHHHHccCCCC-------CcCChHH----
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDF-DVLRISKVILESITLSPC-------ELKDLNS---- 262 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-------~~~~~~~---- 262 (1349)
..+.++|+|..|+|||||++.++.... .+.++.+-+.+.. .+.++....+..-+.... +......
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~---~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD---ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC---CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 346889999999999999999887543 3445555555443 344555444433221111 1111111
Q ss_pred -HHHHHHHHh--cCCceEEEEeCC
Q 000692 263 -VQLKLKEAL--FKKKYLIVLDDV 283 (1349)
Q Consensus 263 -~~~~l~~~l--~~~~~LlVlDdv 283 (1349)
..-.+.+++ +++.+|+++||+
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCc
Confidence 122344555 589999999999
No 454
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.00 E-value=0.92 Score=47.54 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=22.1
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
..+++|+|..|+|||||++.++...
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhcccC
Confidence 3699999999999999999988754
No 455
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.99 E-value=0.81 Score=50.63 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.6
Q ss_pred cEEEEEEccCCChHHHHHHHHHcC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYND 219 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~ 219 (1349)
..+++|+|..|.|||||++.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (274)
T PRK13647 31 GSKTALLGPNGAGKSTLLLHLNGI 54 (274)
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 369999999999999999999864
No 456
>PRK14527 adenylate kinase; Provisional
Probab=92.99 E-value=0.14 Score=53.16 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=23.9
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCCCC
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDKSV 222 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~ 222 (1349)
...+|.|+|++|+||||+|+.+++....
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~ 32 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGL 32 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3578999999999999999999876543
No 457
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.97 E-value=0.099 Score=53.45 Aligned_cols=40 Identities=30% Similarity=0.407 Sum_probs=28.8
Q ss_pred EEEEEccCCChHHHHHHHHHcCCCCcc-cCceEEEEeccccc
Q 000692 198 LIPIVGMGGIGKTTLAREVYNDKSVED-FDPKAWVCVSDDFD 238 (1349)
Q Consensus 198 vv~i~G~gGiGKTtLa~~~~~~~~~~~-f~~~~wv~~~~~~~ 238 (1349)
.|+|+|-||+||||+|..++.....++ |+ +.-|++..+++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~-VLvVDaDpd~n 42 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYN-VLVVDADPDSN 42 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCce-EEEEeCCCCCC
Confidence 589999999999999998666554444 43 55566666554
No 458
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=92.96 E-value=0.36 Score=55.94 Aligned_cols=89 Identities=16% Similarity=0.199 Sum_probs=55.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccc-cHHHHHHHHHHHccCCCC-------CcCChH-----
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDF-DVLRISKVILESITLSPC-------ELKDLN----- 261 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-------~~~~~~----- 261 (1349)
+.+.++|.|.+|+|||+|+.+++.......-+.++++-+.+.. .+.++.+.+...=..... +.....
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 3467899999999999999998776432224677788776554 455566665543111110 111111
Q ss_pred HHHHHHHHHhc---CCceEEEEeCC
Q 000692 262 SVQLKLKEALF---KKKYLIVLDDV 283 (1349)
Q Consensus 262 ~~~~~l~~~l~---~~~~LlVlDdv 283 (1349)
...-.+.++++ ++++|+++||+
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecCh
Confidence 12233455554 68999999999
No 459
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.96 E-value=0.36 Score=51.13 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.4
Q ss_pred EEEEEccCCChHHHHHHHHHcC
Q 000692 198 LIPIVGMGGIGKTTLAREVYND 219 (1349)
Q Consensus 198 vv~i~G~gGiGKTtLa~~~~~~ 219 (1349)
+++|+|..|.|||||++.++.-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999864
No 460
>PRK12678 transcription termination factor Rho; Provisional
Probab=92.95 E-value=0.14 Score=59.91 Aligned_cols=99 Identities=18% Similarity=0.267 Sum_probs=53.4
Q ss_pred HHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceE-EEEecccc-cHHHHHHHHHHHccCCCCCc
Q 000692 180 RVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKA-WVCVSDDF-DVLRISKVILESITLSPCEL 257 (1349)
Q Consensus 180 ~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~-wv~~~~~~-~~~~~~~~i~~~l~~~~~~~ 257 (1349)
++++.+..-. ..+.+.|+|.+|+|||||++.+++......-++.+ .+-+.+.. .+.++.+.+-..+-....+.
T Consensus 405 RvIDll~PIG-----kGQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~ 479 (672)
T PRK12678 405 RVIDLIMPIG-----KGQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDR 479 (672)
T ss_pred eeeeeecccc-----cCCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCC
Confidence 4556655432 34577999999999999999998864322223332 33444433 23333333211111111111
Q ss_pred CC-----hHHHHHHHHHHh--cCCceEEEEeCC
Q 000692 258 KD-----LNSVQLKLKEAL--FKKKYLIVLDDV 283 (1349)
Q Consensus 258 ~~-----~~~~~~~l~~~l--~~~~~LlVlDdv 283 (1349)
.. ...+.-.+.+++ .++.+||++|++
T Consensus 480 p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 480 PPSDHTTVAELAIERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 11 122223344455 689999999999
No 461
>PTZ00301 uridine kinase; Provisional
Probab=92.91 E-value=0.083 Score=55.16 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=21.7
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
..+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4699999999999999999887653
No 462
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=92.90 E-value=0.88 Score=48.56 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=22.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
..+++|.|..|.|||||++.++.-.
T Consensus 30 G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3699999999999999999998653
No 463
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=92.87 E-value=0.83 Score=50.56 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=21.9
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
..+++|+|..|.|||||++.++...
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 33 GSIAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999987653
No 464
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=92.87 E-value=0.16 Score=55.48 Aligned_cols=23 Identities=35% Similarity=0.666 Sum_probs=20.4
Q ss_pred EEEEccCCChHHHHHHHHHcCCC
Q 000692 199 IPIVGMGGIGKTTLAREVYNDKS 221 (1349)
Q Consensus 199 v~i~G~gGiGKTtLa~~~~~~~~ 221 (1349)
|.++|.+|+||||+|++++....
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999987653
No 465
>PRK03839 putative kinase; Provisional
Probab=92.86 E-value=0.07 Score=54.87 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=21.5
Q ss_pred EEEEEccCCChHHHHHHHHHcCCC
Q 000692 198 LIPIVGMGGIGKTTLAREVYNDKS 221 (1349)
Q Consensus 198 vv~i~G~gGiGKTtLa~~~~~~~~ 221 (1349)
.|.|.|++|+||||+|+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998754
No 466
>PRK05973 replicative DNA helicase; Provisional
Probab=92.83 E-value=0.42 Score=50.68 Aligned_cols=49 Identities=14% Similarity=0.076 Sum_probs=33.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHH
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVI 246 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 246 (1349)
...++.|.|.+|+|||++|.+++...-.+ -..+++++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~-Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKS-GRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEEeCC--HHHHHHHH
Confidence 44689999999999999999987654222 345677776655 34444443
No 467
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=92.83 E-value=0.89 Score=48.61 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=21.9
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
..+++|.|..|.|||||++.++...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 26 NSVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999988653
No 468
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=92.82 E-value=0.81 Score=54.93 Aligned_cols=132 Identities=15% Similarity=0.151 Sum_probs=74.7
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCc-c---cC---ceEEEEecc---------------cc-c-HHHHHHHHHHHcc
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVE-D---FD---PKAWVCVSD---------------DF-D-VLRISKVILESIT 251 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~-~---f~---~~~wv~~~~---------------~~-~-~~~~~~~i~~~l~ 251 (1349)
...|+|+|+.|+|||||.+.+....... + .. .+.++.-.. .+ . .+...+..+.+++
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence 3578999999999999999995543211 1 11 122222111 00 1 1445555666655
Q ss_pred CCCCCc-------CChHHHHHHHHHHhcCCceEEEEeCCCCC-ChhhHHHhhccCCCCCCCcEEEEEecchhHHHhhcCC
Q 000692 252 LSPCEL-------KDLNSVQLKLKEALFKKKYLIVLDDVWSK-SYDLWQALKSPFMVGAPDSRIIVTTRSVDVALTMGSG 323 (1349)
Q Consensus 252 ~~~~~~-------~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~~~~~l~~~~~gs~ilvTtR~~~v~~~~~~~ 323 (1349)
...... ..-+...-.+...+-.++=++|||.--+. +.+..+.+...+... + ..||+.|.++....... .
T Consensus 428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~-Gtvl~VSHDr~Fl~~va-~ 504 (530)
T COG0488 428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-E-GTVLLVSHDRYFLDRVA-T 504 (530)
T ss_pred CChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-C-CeEEEEeCCHHHHHhhc-c
Confidence 443321 11222333455666788999999987543 334445555555432 3 34889999998887765 3
Q ss_pred ceEeCCC
Q 000692 324 GYCELKL 330 (1349)
Q Consensus 324 ~~~~l~~ 330 (1349)
..+.+++
T Consensus 505 ~i~~~~~ 511 (530)
T COG0488 505 RIWLVED 511 (530)
T ss_pred eEEEEcC
Confidence 4555553
No 469
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=92.81 E-value=0.84 Score=48.44 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=22.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
..+++|.|..|+|||||++.++...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998753
No 470
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.79 E-value=1.6 Score=52.73 Aligned_cols=97 Identities=22% Similarity=0.228 Sum_probs=57.9
Q ss_pred ccccchhhHHHHHHHHhccCC------CCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHH
Q 000692 170 AVYGRDEDKARVLKIVLKIDP------NDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRIS 243 (1349)
Q Consensus 170 ~~~Gr~~~~~~l~~~l~~~~~------~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 243 (1349)
.+=|-++.+.+|.+-+.-+-. .+-....-|.++|++|.|||-+|++|+.+.... |++|..+ +++
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~------FlSVKGP----ELL 742 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN------FLSVKGP----ELL 742 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee------EEeecCH----HHH
Confidence 455777777777765532100 011234578899999999999999999875533 4555443 222
Q ss_pred HHHHHHccCCCCCcCChHHHHHHHHHHhcCCceEEEEeCCCC
Q 000692 244 KVILESITLSPCELKDLNSVQLKLKEALFKKKYLIVLDDVWS 285 (1349)
Q Consensus 244 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~ 285 (1349)
..- ++ .+.+.+.+.+.+.-..++++|.+|.+++
T Consensus 743 NMY---VG------qSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 743 NMY---VG------QSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred HHH---hc------chHHHHHHHHHHhhccCCeEEEeccccc
Confidence 211 11 1122233333444456899999999965
No 471
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.77 E-value=0.34 Score=52.11 Aligned_cols=42 Identities=21% Similarity=0.284 Sum_probs=30.8
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEeccc
Q 000692 194 SSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDD 236 (1349)
Q Consensus 194 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~ 236 (1349)
.....+.|.|.+|+||||+|.+++...- +.-..++|++....
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~-~~g~~~~~is~e~~ 59 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGL-RDGDPVIYVTTEES 59 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHH-hcCCeEEEEEccCC
Confidence 3457999999999999999998765322 12346788887544
No 472
>PRK09099 type III secretion system ATPase; Provisional
Probab=92.76 E-value=0.54 Score=54.69 Aligned_cols=87 Identities=15% Similarity=0.173 Sum_probs=51.5
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCC-------CcCChHH-----
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPC-------ELKDLNS----- 262 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------~~~~~~~----- 262 (1349)
+...++|.|..|+|||||++.++...... ..+++..-.+...+.++.+.+...-..... +.....+
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d--~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~ 239 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQCD--VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAY 239 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC--eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHH
Confidence 34689999999999999999998754321 234444444444555655555443221111 1111111
Q ss_pred HHHHHHHHh--cCCceEEEEeCC
Q 000692 263 VQLKLKEAL--FKKKYLIVLDDV 283 (1349)
Q Consensus 263 ~~~~l~~~l--~~~~~LlVlDdv 283 (1349)
..-.+.+++ +++++|+++||+
T Consensus 240 ~a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 240 VATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 122344444 578999999999
No 473
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=92.74 E-value=0.17 Score=48.01 Aligned_cols=42 Identities=21% Similarity=0.137 Sum_probs=29.5
Q ss_pred hhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCC
Q 000692 176 EDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKS 221 (1349)
Q Consensus 176 ~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~ 221 (1349)
++..++.+.+...- ....+|.+.|.-|+||||+++.++....
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34455555553321 1235899999999999999999988754
No 474
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.74 E-value=0.95 Score=49.05 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.6
Q ss_pred EEEEEEccCCChHHHHHHHHHcCC
Q 000692 197 RLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
.+++|+|..|+|||||++.++.-.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 30 AIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998653
No 475
>PRK08149 ATP synthase SpaL; Validated
Probab=92.71 E-value=0.41 Score=55.36 Aligned_cols=85 Identities=15% Similarity=0.195 Sum_probs=50.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecc-cccHHHHHHHHHHHccCCC-------CCcCChH-----H
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSD-DFDVLRISKVILESITLSP-------CELKDLN-----S 262 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-------~~~~~~~-----~ 262 (1349)
...++|+|..|+|||||+..++.... .+.++...+.. ..++.++..+......... .+..... .
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~---~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~ 227 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSE---ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAAL 227 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCC---CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHH
Confidence 46889999999999999999987543 23333333433 3345555555555322211 1111111 1
Q ss_pred HHHHHHHHh--cCCceEEEEeCC
Q 000692 263 VQLKLKEAL--FKKKYLIVLDDV 283 (1349)
Q Consensus 263 ~~~~l~~~l--~~~~~LlVlDdv 283 (1349)
....+.+++ +++++|+++||+
T Consensus 228 ~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 228 VATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHcCCCEEEEccch
Confidence 222334444 589999999999
No 476
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.69 E-value=0.23 Score=56.68 Aligned_cols=65 Identities=23% Similarity=0.230 Sum_probs=48.6
Q ss_pred CccccchhhHHHHHHHHhccCCCCCCCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHH
Q 000692 169 PAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKV 245 (1349)
Q Consensus 169 ~~~~Gr~~~~~~l~~~l~~~~~~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 245 (1349)
..++|+++....+...+... +.+.+.|.+|+|||++|+.++..... ..++|.+.......++...
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~~l~~----~~~~i~~t~~l~p~d~~G~ 88 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALARALGL----PFVRIQCTPDLLPSDLLGT 88 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHHHhCC----CeEEEecCCCCCHHHhcCc
Confidence 34889888888888877654 35889999999999999999887542 3456777776666655543
No 477
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=92.69 E-value=0.96 Score=48.80 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.6
Q ss_pred cEEEEEEccCCChHHHHHHHHHcC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYND 219 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~ 219 (1349)
..+++|+|..|.|||||++.++..
T Consensus 47 Ge~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 47 GEIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999865
No 478
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=92.67 E-value=0.96 Score=49.38 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=22.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
..+++|+|..|.|||||++.++.-.
T Consensus 38 Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 38 GQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999998653
No 479
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.62 E-value=1.1 Score=48.47 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=22.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
..+++|.|..|.|||||++.++.-.
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 27 GKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 3589999999999999999998653
No 480
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=92.59 E-value=0.78 Score=47.72 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.1
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
..+++|.|..|.|||||.+.++.-.
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999998754
No 481
>PRK04040 adenylate kinase; Provisional
Probab=92.57 E-value=0.093 Score=53.93 Aligned_cols=24 Identities=25% Similarity=0.577 Sum_probs=22.0
Q ss_pred EEEEEEccCCChHHHHHHHHHcCC
Q 000692 197 RLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
.+|+|+|++|+||||+++.+....
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998865
No 482
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.56 E-value=11 Score=43.21 Aligned_cols=152 Identities=13% Similarity=0.058 Sum_probs=78.1
Q ss_pred EEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCCCcCChHHHHHHHHHHhcCCce
Q 000692 197 RLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPCELKDLNSVQLKLKEALFKKKY 276 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 276 (1349)
|--.++|++|.|||++..++++... ||.. =+..+...+-.+ ++.++.. ...|-
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~---ydIy-dLeLt~v~~n~d-Lr~LL~~----------------------t~~kS 288 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN---YDIY-DLELTEVKLDSD-LRHLLLA----------------------TPNKS 288 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC---CceE-EeeeccccCcHH-HHHHHHh----------------------CCCCc
Confidence 4567899999999999999999754 4422 122222211111 2222222 23456
Q ss_pred EEEEeCCCCC------Ch------------hhHHHhhcc---CCCCCCCcEEEE-EecchhHHH--hhcCC---ceEeCC
Q 000692 277 LIVLDDVWSK------SY------------DLWQALKSP---FMVGAPDSRIIV-TTRSVDVAL--TMGSG---GYCELK 329 (1349)
Q Consensus 277 LlVlDdv~~~------~~------------~~~~~~~~~---l~~~~~gs~ilv-TtR~~~v~~--~~~~~---~~~~l~ 329 (1349)
+||+.|++-. .. ..+.-+... +...+.+-|||| ||-..+-.+ .+.+. ..+.|.
T Consensus 289 IivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mg 368 (457)
T KOG0743|consen 289 ILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMG 368 (457)
T ss_pred EEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcC
Confidence 6677766321 00 111112222 222222346654 665433221 12222 357889
Q ss_pred CCChhhHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhCCChHHHHHHHHhhc
Q 000692 330 LLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARALGGLLR 382 (1349)
Q Consensus 330 ~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~ 382 (1349)
-=+.+....|+........ + ..++.+|.+...|--+.=..++..+-
T Consensus 369 yCtf~~fK~La~nYL~~~~---~----h~L~~eie~l~~~~~~tPA~V~e~lm 414 (457)
T KOG0743|consen 369 YCTFEAFKTLASNYLGIEE---D----HRLFDEIERLIEETEVTPAQVAEELM 414 (457)
T ss_pred CCCHHHHHHHHHHhcCCCC---C----cchhHHHHHHhhcCccCHHHHHHHHh
Confidence 9999999999988874322 1 23444555555555444444444433
No 483
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=92.53 E-value=1.3 Score=48.94 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.3
Q ss_pred cEEEEEEccCCChHHHHHHHHHcC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYND 219 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~ 219 (1349)
..+++|+|..|+|||||++.++.-
T Consensus 45 Ge~~~i~G~nGsGKSTLl~~l~Gl 68 (267)
T PRK14235 45 KTVTAFIGPSGCGKSTFLRCLNRM 68 (267)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999999753
No 484
>PRK06936 type III secretion system ATPase; Provisional
Probab=92.53 E-value=0.59 Score=54.08 Aligned_cols=86 Identities=19% Similarity=0.224 Sum_probs=52.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccc-cHHHHHHHHHHHccCCCC-------CcCChHH----
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDF-DVLRISKVILESITLSPC-------ELKDLNS---- 262 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-------~~~~~~~---- 262 (1349)
+...++|.|..|+|||||...++.... .+.++++-+.+.. .+.++....+..-+.... +......
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~---~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE---VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAG 237 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC---CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHH
Confidence 346899999999999999999988643 3566777676543 344444443332111111 1111111
Q ss_pred -HHHHHHHHh--cCCceEEEEeCC
Q 000692 263 -VQLKLKEAL--FKKKYLIVLDDV 283 (1349)
Q Consensus 263 -~~~~l~~~l--~~~~~LlVlDdv 283 (1349)
....+.+++ +++++|+++|++
T Consensus 238 ~~a~tiAEyfrd~G~~Vll~~Dsl 261 (439)
T PRK06936 238 FVATSIAEYFRDQGKRVLLLMDSV 261 (439)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 112244444 589999999999
No 485
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.52 E-value=0.09 Score=50.94 Aligned_cols=39 Identities=23% Similarity=0.333 Sum_probs=28.9
Q ss_pred EEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecc
Q 000692 197 RLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSD 235 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~ 235 (1349)
.+|.|+|..|+|||||++.+.+....+++...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence 379999999999999999999887655566666666554
No 486
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.52 E-value=0.8 Score=50.94 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=22.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
..+++|+|..|.|||||++.++.-.
T Consensus 33 Ge~~~I~G~nGaGKSTLl~~l~G~~ 57 (282)
T PRK13640 33 GSWTALIGHNGSGKSTISKLINGLL 57 (282)
T ss_pred CCEEEEECCCCCcHHHHHHHHhccc
Confidence 3599999999999999999998653
No 487
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.50 E-value=0.51 Score=54.65 Aligned_cols=86 Identities=17% Similarity=0.111 Sum_probs=49.2
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCC-------CcCChHH-----H
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPC-------ELKDLNS-----V 263 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------~~~~~~~-----~ 263 (1349)
...++|+|..|+|||||++.++..... ...++...-.+...+.++.+..+..-+.... +.....+ .
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~~--~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~ 217 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTDA--DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYT 217 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCCC--CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHH
Confidence 468999999999999999988875432 2223333323344455555544433221111 1111111 1
Q ss_pred HHHHHHHh--cCCceEEEEeCC
Q 000692 264 QLKLKEAL--FKKKYLIVLDDV 283 (1349)
Q Consensus 264 ~~~l~~~l--~~~~~LlVlDdv 283 (1349)
...+.+++ +++++|+++||+
T Consensus 218 a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 218 ATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 22344555 578999999999
No 488
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.49 E-value=0.13 Score=55.22 Aligned_cols=44 Identities=23% Similarity=0.163 Sum_probs=30.3
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccc
Q 000692 194 SSFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDF 237 (1349)
Q Consensus 194 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~ 237 (1349)
+...++.|.|.+|+|||++|.+++...-.+.-..++||+..+++
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~ 60 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPP 60 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-H
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCH
Confidence 45679999999999999999997654321103467888876654
No 489
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=92.49 E-value=0.78 Score=53.15 Aligned_cols=121 Identities=12% Similarity=0.081 Sum_probs=64.3
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCCCCcccCceEEEEecccccHHHHHHHHHHHccCCCC-------CcCC-----hHH
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDKSVEDFDPKAWVCVSDDFDVLRISKVILESITLSPC-------ELKD-----LNS 262 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------~~~~-----~~~ 262 (1349)
..+.++|+|..|+|||||+..++..... ...++...-.+...+.+..++.+..-+.... +... ...
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~--~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~ 232 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAKA--DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAK 232 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCCC--CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHH
Confidence 3468899999999999999999876532 2223333323345566666655544222111 1111 111
Q ss_pred HHHHHHHHh--cCCceEEEEeCCCCCChhhHHHhhc---cCCCCCCCcEEEEEecchhHHHhh
Q 000692 263 VQLKLKEAL--FKKKYLIVLDDVWSKSYDLWQALKS---PFMVGAPDSRIIVTTRSVDVALTM 320 (1349)
Q Consensus 263 ~~~~l~~~l--~~~~~LlVlDdv~~~~~~~~~~~~~---~l~~~~~gs~ilvTtR~~~v~~~~ 320 (1349)
.+..+.+++ +++++|+++||+-.-. +...++.. ..|. .|--..+.|....+..+.
T Consensus 233 ~a~~iAEyfr~~G~~VLlilDslTr~a-~A~reisl~~~e~p~--~G~~~~~~s~l~~L~ERa 292 (432)
T PRK06793 233 LATSIAEYFRDQGNNVLLMMDSVTRFA-DARRSVDIAVKELPI--GGKTLLMESYMKKLLERS 292 (432)
T ss_pred HHHHHHHHHHHcCCcEEEEecchHHHH-HHHHHHHHHhcCCCC--CCeeeeeeccchhHHHHh
Confidence 222334444 4789999999994321 22233322 2222 255455555555555443
No 490
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=92.47 E-value=0.07 Score=49.11 Aligned_cols=22 Identities=55% Similarity=0.676 Sum_probs=19.2
Q ss_pred EEEEccCCChHHHHHHHHHcCC
Q 000692 199 IPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 199 v~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
|-|+|.+|+|||++|..++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999987764
No 491
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.45 E-value=0.0062 Score=61.09 Aligned_cols=88 Identities=18% Similarity=0.228 Sum_probs=77.7
Q ss_pred ccccC-ccccCCCccceEEecCCCCcccccccccCCCCcEEEecCccCCCcCchhhhccccccEEEecCCCccccCcccc
Q 000692 593 ITEVP-ISIGCLRHLRYLNFSDTKIKCLPESVTSLLNLEILILRDCLHLLKLPSSIGNLVKLLHLDIEGANLLSELPLRM 671 (1349)
Q Consensus 593 i~~lp-~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i 671 (1349)
++++| ..|.....-+.||++.|++..+-..++.++.|..||++.| .+..+|..++.+..++++++..|+ ....|..+
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~ 107 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQ 107 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccc-hhhCCccc
Confidence 44555 4577888999999999999999999999999999999987 789999999999999999988887 88999999
Q ss_pred ccCcCCCCCCe
Q 000692 672 KELKCLQTLTN 682 (1349)
Q Consensus 672 ~~L~~L~~L~~ 682 (1349)
++++.++.++.
T Consensus 108 ~k~~~~k~~e~ 118 (326)
T KOG0473|consen 108 KKEPHPKKNEQ 118 (326)
T ss_pred cccCCcchhhh
Confidence 99998888743
No 492
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=92.45 E-value=1.1 Score=48.39 Aligned_cols=24 Identities=33% Similarity=0.438 Sum_probs=21.5
Q ss_pred cEEEEEEccCCChHHHHHHHHHcC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYND 219 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~ 219 (1349)
..+++|+|..|.|||||++.++.-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 28 GEVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998864
No 493
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=92.43 E-value=0.19 Score=53.13 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.2
Q ss_pred EEEEccCCChHHHHHHHHHcCCC
Q 000692 199 IPIVGMGGIGKTTLAREVYNDKS 221 (1349)
Q Consensus 199 v~i~G~gGiGKTtLa~~~~~~~~ 221 (1349)
|.|+|++|+||||+|+.++....
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g 24 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG 24 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 67899999999999999987643
No 494
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.42 E-value=0.82 Score=50.74 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.6
Q ss_pred cEEEEEEccCCChHHHHHHHHHcC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYND 219 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~ 219 (1349)
..+++|+|..|.|||||++.++.-
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (279)
T PRK13650 33 GEWLSIIGHNGSGKSTTVRLIDGL 56 (279)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999865
No 495
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=92.42 E-value=0.42 Score=55.17 Aligned_cols=89 Identities=18% Similarity=0.273 Sum_probs=55.4
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcCCCCc--c-cC---------ceEEEEecccccHHHHHHHHHHHcc-CCCC------
Q 000692 195 SFRLIPIVGMGGIGKTTLAREVYNDKSVE--D-FD---------PKAWVCVSDDFDVLRISKVILESIT-LSPC------ 255 (1349)
Q Consensus 195 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~--~-f~---------~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~------ 255 (1349)
+.+.++|.|-+|+|||||+.++++..... . .| .++++-+.+.....+.+.+.+..-+ ....
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~at 219 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNL 219 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEEC
Confidence 34678999999999999999998765410 0 12 5677777777655565555555444 2111
Q ss_pred -CcCChHH-----HHHHHHHHhc---CCceEEEEeCC
Q 000692 256 -ELKDLNS-----VQLKLKEALF---KKKYLIVLDDV 283 (1349)
Q Consensus 256 -~~~~~~~-----~~~~l~~~l~---~~~~LlVlDdv 283 (1349)
+.....+ ....+.++++ ++++|+++||+
T Consensus 220 sd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~Dsl 256 (466)
T TIGR01040 220 ANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDM 256 (466)
T ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccCh
Confidence 1111111 1223455554 68999999999
No 496
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=92.40 E-value=1 Score=49.48 Aligned_cols=25 Identities=36% Similarity=0.408 Sum_probs=22.1
Q ss_pred cEEEEEEccCCChHHHHHHHHHcCC
Q 000692 196 FRLIPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 196 ~~vv~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
..+++|.|..|.|||||++.++...
T Consensus 32 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 32 GEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3599999999999999999998753
No 497
>PRK14528 adenylate kinase; Provisional
Probab=92.37 E-value=0.21 Score=51.52 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=21.4
Q ss_pred EEEEEEccCCChHHHHHHHHHcCCC
Q 000692 197 RLIPIVGMGGIGKTTLAREVYNDKS 221 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~~~~ 221 (1349)
+.|.|.|++|+||||+|+.++....
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~ 26 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLS 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4588999999999999999987643
No 498
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=92.37 E-value=0.48 Score=49.40 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=20.1
Q ss_pred EEEEccCCChHHHHHHHHHcCC
Q 000692 199 IPIVGMGGIGKTTLAREVYNDK 220 (1349)
Q Consensus 199 v~i~G~gGiGKTtLa~~~~~~~ 220 (1349)
|.|.|++|+||||+|+.++...
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998864
No 499
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=92.37 E-value=0.15 Score=53.56 Aligned_cols=22 Identities=36% Similarity=0.356 Sum_probs=20.3
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 000692 197 RLIPIVGMGGIGKTTLAREVYN 218 (1349)
Q Consensus 197 ~vv~i~G~gGiGKTtLa~~~~~ 218 (1349)
.+++|+|..|.||||+.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999883
No 500
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=92.36 E-value=0.5 Score=49.18 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=18.8
Q ss_pred EEEEEccCCChHHHHHHHHH
Q 000692 198 LIPIVGMGGIGKTTLAREVY 217 (1349)
Q Consensus 198 vv~i~G~gGiGKTtLa~~~~ 217 (1349)
+++|+|..|+|||||++.++
T Consensus 24 ~~~i~G~nGsGKStll~al~ 43 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 88999999999999999976
Done!