Query 000692
Match_columns 1349
No_of_seqs 487 out of 5436
Neff 10.3
Searched_HMMs 29240
Date Tue Mar 26 16:25:01 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000692.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_464-468//hhsearch_pdb/000692hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 395.3 25.1 320 167-508 126-473 (549)
2 3rgz_A Protein brassinosteroid 1.0 1 1 359.9 32.7 108 573-680 69-183 (768)
3 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 352.4 26.6 312 163-506 118-452 (1249)
4 3rgz_A Protein brassinosteroid 1.0 1 1 351.7 31.8 492 581-1198 50-560 (768)
5 1vt4_I APAF-1 related killer D 1.0 1 1 326.8 19.4 286 168-499 127-436 (1221)
6 1ziw_A TOLL-like receptor 3; i 1.0 1 1 304.1 40.6 274 953-1259 325-623 (680)
7 1z6t_A APAF-1, apoptotic prote 1.0 1 1 298.7 25.3 306 166-504 121-450 (591)
8 1ziw_A TOLL-like receptor 3; i 1.0 1 1 294.6 40.5 197 1101-1302 402-618 (680)
9 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 288.8 28.7 99 581-680 32-133 (606)
10 3t6q_A CD180 antigen; protein- 1.0 1 1 283.1 36.3 100 581-681 33-135 (606)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=395.29 Aligned_cols=320 Identities=19% Similarity=0.293 Sum_probs=257.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHC--CCCCCC-CCCEEEEEECCCC--CHHH
Q ss_conf 9994024145699999999615999999938999993698749999999972--778765-6864999964650--0899
Q 000692 167 NEPAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYN--DKSVED-FDPKAWVCVSDDF--DVLR 241 (1349)
Q Consensus 167 ~~~~~~gr~~~~~~i~~~l~~~~~~~~~~~~vi~I~G~gG~GKTtLa~~v~~--~~~~~~-f~~~~wv~~~~~~--~~~~ 241 (1349)
..+..|||+.+++++.++|.... +...++|+|+||||+||||||+++|+ +.+.+. |+.++||++++.+ +...
T Consensus 126 ~~~~~~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 202 (549)
T 2a5y_B 126 KQMTCYIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFD 202 (549)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCCC---CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHH
T ss_conf 97760784179999999872515---789628999869999889999999984069874669957999978987879999
Q ss_pred HHHHHHHHCCCCCC-------CCCCHHHHHHHHHHHHCCC-CEEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEEECC
Q ss_conf 99999997148977-------7578689999999993499-629999189989942499843347789999389999162
Q 000692 242 ISKVILESITLSPC-------ELKDLNSVQLKLKEALFKK-KYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRS 313 (1349)
Q Consensus 242 ~~~~i~~~l~~~~~-------~~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~~~iivTtr~ 313 (1349)
++..++.+++.... +..+.+.++..+.+.++++ ||||||||+|+.....|.. .+||+||||||+
T Consensus 203 ~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~ 274 (549)
T 2a5y_B 203 LFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRD 274 (549)
T ss_dssp HHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESB
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHCCCC--------CCCCEEEEECCC
T ss_conf 999999998537553455553314699999999999768984899997999714415432--------699889997497
Q ss_pred HHHHHHHCCC-CEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 4588732487-438577999453899999977068999994239999999999917985899999976403888688999
Q 000692 314 VDVALTMGSG-GYCELKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARALGGLLRSRQRFVEWDD 392 (1349)
Q Consensus 314 ~~~~~~~~~~-~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~ 392 (1349)
..++..++.. ..+++++|++++||+||.+.+|+.. ..++..+++.+|+++|+|+|||++++|+.++.+ .. +|..
T Consensus 275 ~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w-~~~~ 349 (549)
T 2a5y_B 275 VEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TF-EKMA 349 (549)
T ss_dssp GGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SH-HHHH
T ss_pred HHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-HH-HHHH
T ss_conf 799997088973898999898999999998744899---855689999999999599839999999984434-48-9998
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHH-----------HHCCCCCCCCCCHHHHHHHHHHC--CCCCCCCCC
Q ss_conf 87100346689999049999953279777768997-----------83268999600648899999992--997889887
Q 000692 393 ILDSKIWDLHDEIEIPSVLKLSYHHLPSHLKRCFA-----------YCAILPKDYEFEEEELVLLWIAE--GLIQPSKDS 459 (1349)
Q Consensus 393 ~l~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~-----------~~a~fp~~~~i~~~~l~~~w~a~--g~~~~~~~~ 459 (1349)
.+....+... ..++..++.+||+.||.+.|.||+ |||+||+++.|+ +.+|+|+ ||+.....+
T Consensus 350 ~l~~~l~~~~-~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~ 424 (549)
T 2a5y_B 350 QLNNKLESRG-LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEE 424 (549)
T ss_dssp HHHHHHHHHC-SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------C
T ss_pred HHHHHHHCCC-HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHEEEECCCCEEE----EEEEEEECCCEECCCCCC
T ss_conf 7578761364-77789897516202267999997526522336743235608997666----533110135500267789
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 3099999999999986758412589-985100346899986611346227
Q 000692 460 KQLEDLSSEYFRDLLSRSMLQKSSS-SEYKYVMHDLVHDLAQWASGETCF 508 (1349)
Q Consensus 460 ~~~~~~~~~~~~~L~~~~ll~~~~~-~~~~~~~h~lv~~~~~~~~~~~~~ 508 (1349)
...+++++ ++++|+++||++.... ....|+|||+||++|+.++.+++.
T Consensus 425 ~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 425 QLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp CCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred CCHHHHHH-HHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHHHH
T ss_conf 99999999-99999875883671479804999676999999999889899
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=359.89 Aligned_cols=108 Identities=19% Similarity=0.116 Sum_probs=67.4
Q ss_pred HHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCC-CCCC--CCCCCCCCCEEEECCCCCCCCCCHHH-H
Q ss_conf 310002799652998525555434853257886656770489771-2260--10167887589806866887686311-0
Q 000692 573 LSDLLPKFKKLRVLSLRRYYITEVPISIGCLRHLRYLNFSDTKIK-CLPE--SVTSLLNLEILILRDCLHLLKLPSSI-G 648 (1349)
Q Consensus 573 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~-~lp~--~~~~L~~L~~L~l~~~~~~~~lp~~i-~ 648 (1349)
.+..+..++.|+.++++.+.+..+|..|+++.+|++|+|++|.+. .+|. .++++++|++|++++|......|..+ .
T Consensus 69 l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 148 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCC
T ss_pred CCHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHC
T ss_conf 69657316802246786888678703324578899898989857870789678727889998989688267747977856
Q ss_pred CCCCCCEEEECCCCCCCCCCCC---CCCCCCCCCC
Q ss_conf 3345549974188753547544---4457678877
Q 000692 649 NLVKLLHLDIEGANLLSELPLR---MKELKCLQTL 680 (1349)
Q Consensus 649 ~L~~L~~L~l~~~~~~~~~p~~---i~~L~~L~~L 680 (1349)
++++|++|++++|......|.. ++++++|+.|
T Consensus 149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L 183 (768)
T 3rgz_A 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHL 183 (768)
T ss_dssp CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEE
T ss_pred CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEE
T ss_conf 38899989897983588587155664358988989
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=352.43 Aligned_cols=312 Identities=21% Similarity=0.343 Sum_probs=243.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCC--CC-CCCEEEEEECCCC--
Q ss_conf 789999940241456999999996159999999389999936987499999999727787--65-6864999964650--
Q 000692 163 TCLPNEPAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSV--ED-FDPKAWVCVSDDF-- 237 (1349)
Q Consensus 163 ~~~~~~~~~~gr~~~~~~i~~~l~~~~~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~--~~-f~~~~wv~~~~~~-- 237 (1349)
..+++.+.|+||+++++++.+.|.... ...++|+|+||||+||||||++++++... .. ++.++|+++++..
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 193 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKS 193 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHH
T ss_pred CCCCCCCEECCHHHHHHHHHHHHHHCC----CCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCCH
T ss_conf 979998641257999999999986135----8877799991898888899999860756788627881799997885726
Q ss_pred CHHHHHHHHHHHCCCCCC----CCCCHHHHHHHHHHHHCCC--CEEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEEE
Q ss_conf 089999999997148977----7578689999999993499--6299991899899424998433477899993899991
Q 000692 238 DVLRISKVILESITLSPC----ELKDLNSVQLKLKEALFKK--KYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTT 311 (1349)
Q Consensus 238 ~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~l~~~l~~~--~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~~~iivTt 311 (1349)
.....+..++..+..... ...+.+++...++..+.++ |+||||||+|+. ..|.. + .+|++|||||
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~----~---~~~~~ilvTt 264 (1249)
T 3sfz_A 194 GLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKA----F---DNQCQILLTT 264 (1249)
T ss_dssp HHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTT----T---CSSCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCH--HHHHH----H---CCCCEEEEEC
T ss_conf 7999999999986553033347887778999999999735678789999567997--78876----3---6897899992
Q ss_pred CCHHHHHH-HCCCCEEECCC-CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHH
Q ss_conf 62458873-24874385779-99453899999977068999994239999999999917985899999976403888688
Q 000692 312 RSVDVALT-MGSGGYCELKL-LSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARALGGLLRSRQRFVE 389 (1349)
Q Consensus 312 r~~~~~~~-~~~~~~~~l~~-l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~ 389 (1349)
|++.++.. ......+.+++ |+++++++||...++... +...+.+.+|+++|+|+||||+++|+.++.+. ..
T Consensus 265 R~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~ 337 (1249)
T 3sfz_A 265 RDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NR 337 (1249)
T ss_dssp SSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SC
T ss_pred CCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCH-----HHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH--HH
T ss_conf 778998763488437982588887889999998657981-----34838899999984997799999999862480--57
Q ss_pred HHHHHHHCCCCC----CCC-----CCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 999871003466----899-----99049999953279777768997832689996006488999999929978898873
Q 000692 390 WDDILDSKIWDL----HDE-----IEIPSVLKLSYHHLPSHLKRCFAYCAILPKDYEFEEEELVLLWIAEGLIQPSKDSK 460 (1349)
Q Consensus 390 w~~~l~~~~~~~----~~~-----~~~~~~l~~s~~~L~~~~~~~f~~~a~fp~~~~i~~~~l~~~w~a~g~~~~~~~~~ 460 (1349)
|...++...... ... ..+..++.+||+.|++++|.||+|||+||+++.|+.+.++.+|.++
T Consensus 338 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~---------- 407 (1249)
T 3sfz_A 338 WAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE---------- 407 (1249)
T ss_dssp HHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC----------
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEECHHHHHHHHCCC----------
T ss_conf 9999999865044303465564467799999989986799999999972813799751899999885898----------
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCHHHHHHHHHHHCCCCC
Q ss_conf 0999999999999867584125899-851003468999866113462
Q 000692 461 QLEDLSSEYFRDLLSRSMLQKSSSS-EYKYVMHDLVHDLAQWASGET 506 (1349)
Q Consensus 461 ~~~~~~~~~~~~L~~~~ll~~~~~~-~~~~~~h~lv~~~~~~~~~~~ 506 (1349)
++.+..++++|++++|++....+ ...|+|||++|++++..+.++
T Consensus 408 --~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 --TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp --HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred --HHHHHHHHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHH
T ss_conf --889999999997446338963798118996689999987450678
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=351.67 Aligned_cols=492 Identities=16% Similarity=0.081 Sum_probs=218.9
Q ss_pred CCCCEEEECCCCCC-C---CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCH--HHHCCCCCC
Q ss_conf 96529985255554-3---48532578866567704897712260101678875898068668876863--110334554
Q 000692 581 KKLRVLSLRRYYIT-E---VPISIGCLRHLRYLNFSDTKIKCLPESVTSLLNLEILILRDCLHLLKLPS--SIGNLVKLL 654 (1349)
Q Consensus 581 ~~Lr~L~L~~~~i~-~---lp~~i~~l~~Lr~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~--~i~~L~~L~ 654 (1349)
.+++.|+|+++.+. . +|.++.++.+|++++++.+.+..+|..++.+++|++|++++|.....+|. .++++++|+
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~ 129 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLK 129 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCC
T ss_pred CCEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCC
T ss_conf 92789877899867755766965731680224678688867870332457889989898985787078967872788999
Q ss_pred EEEECCCCCCCCCCCCC-CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCCE
Q ss_conf 99741887535475444-45767887781682768866712434611478549990876889934426851039999870
Q 000692 655 HLDIEGANLLSELPLRM-KELKCLQTLTNFIVSKGSGCTLKDLKNWKFLRGRLCISGLENVINSQEANEAMLREKKGLKF 733 (1349)
Q Consensus 655 ~L~l~~~~~~~~~p~~i-~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~ 733 (1349)
+|++++|.....+|..+ +++++|++|..... .+.. ........+..+++|+.
T Consensus 130 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n------~l~~---------------------~~~~~~~~~~~l~~L~~ 182 (768)
T 3rgz_A 130 FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN------SISG---------------------ANVVGWVLSDGCGELKH 182 (768)
T ss_dssp EEECCSSEEECCSSCCSCCCCTTCSEEECCSS------CCEE---------------------ETHHHHHHTTCCTTCCE
T ss_pred EEECCCCCCCCCCCHHHHCCCCCCCEEECCCC------CCCC---------------------CCCHHHHHHCCCCCCCE
T ss_conf 89896882677479778563889998989798------3588---------------------58715566435898898
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 89984689887120477998841088998977089964379989856499999970199992699999999989748886
Q 000692 734 LQLEWGAELDDSRDKAREMNILDMLQPHRNVKGLAVNFYGGAKFPSWVGDPSFSNIVFLILQNCKRCTSLPTLGQLCSLK 813 (1349)
Q Consensus 734 L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~ 813 (1349)
|++..+. ....... ..+++|+.|.+++|.....+|.++.+++|+
T Consensus 183 L~Ls~n~---------------------------------l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~ 226 (768)
T 3rgz_A 183 LAISGNK---------------------------------ISGDVDV---SRCVNLEFLDVSSNNFSTGIPFLGDCSALQ 226 (768)
T ss_dssp EECCSSE---------------------------------EESCCBC---TTCTTCCEEECCSSCCCSCCCBCTTCCSCC
T ss_pred EECCCCC---------------------------------CCCCCCC---CCCCCCCEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 9897880---------------------------------3465784---547868989892882788771112699999
Q ss_pred EEEECCCCCCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC---
Q ss_conf 24441888852837522489886678875557614754343347787676223568642311014687835999999---
Q 000692 814 DLTIVGMSGLRSVGSEIYGEGSSKPFESLQSLYFEDLQEWEHWEPNRENDEHLQAFPHLRKLSIKKCPKLSGRLPNH--- 890 (1349)
Q Consensus 814 ~L~l~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~p~~--- 890 (1349)
+|+++++.....++..+ ..+++|+.|.+.++.-..... ...+++|++|++++| .+.+.+|..
T Consensus 227 ~L~Ls~n~l~~~~~~~l------~~l~~L~~L~Ls~n~l~~~~~--------~~~l~~L~~L~L~~n-~l~~~ip~~~~~ 291 (768)
T 3rgz_A 227 HLDISGNKLSGDFSRAI------STCTELKLLNISSNQFVGPIP--------PLPLKSLQYLSLAEN-KFTGEIPDFLSG 291 (768)
T ss_dssp EEECCSSCCCSCHHHHT------TTCSSCCEEECCSSCCEESCC--------CCCCTTCCEEECCSS-EEEESCCCCSCT
T ss_pred EEECCCCCCCCCCCHHH------HCCCCCCEEECCCCCCCCCCC--------CCCCCCCCEEECCCC-CCCCCCCHHHHH
T ss_conf 89794885878165777------448888989898886657167--------243687898979178-557725888884
Q ss_pred -CCCCCEEEEECCCC---CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf -99842899930356---11238998544268870789822359888898761786154686433322236422799926
Q 000692 891 -LPSLEKIVITECMQ---LVVSLPSLPAACKLKIDGCKRLVCDGPSESNSLSNMTLYNISEFENWSSQKFQKVEHLKIVG 966 (1349)
Q Consensus 891 -l~~L~~L~l~~~~~---l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~ 966 (1349)
+++|+.|++.+|.. .+..+..+++|+.|+++++..... +....+..+++|+.+++.+
T Consensus 292 ~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-------------------ip~~~l~~l~~L~~L~Ls~ 352 (768)
T 3rgz_A 292 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE-------------------LPMDTLLKMRGLKVLDLSF 352 (768)
T ss_dssp TCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEE-------------------CCHHHHTTCTTCCEEECCS
T ss_pred HCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCC-------------------CCHHHHHCCCCCCEEECCC
T ss_conf 468688998968967784236775587766778978852573-------------------7978872488887884847
Q ss_pred CCCCCCCCCCCCCCCCCCCCC-CCCEEEEECCCCCCCCCCC-CC--CCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 789532123578845666667-7551785058996446876-79--9985769871588822453221246775445751
Q 000692 967 CEGFINEICLGKPLEGLQSLT-SLKDLLIGNCPTLVSLPKA-CF--LSNLREITIEDCNALTSLTDGMIHNNARLEVLRI 1042 (1349)
Q Consensus 967 c~~l~~~~~~~~~~~~~~~l~-~L~~L~l~~c~~l~~~~~~-~~--l~~L~~L~l~~c~~l~~i~~~~~~~l~~L~~L~l 1042 (1349)
|.. ....|..+..++ +|+.|++++|.....++.. .. +++|+.|++++|.....+|.. +..+++|+.|++
T Consensus 353 n~l------~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L 425 (768)
T 3rgz_A 353 NEF------SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT-LSNCSELVSLHL 425 (768)
T ss_dssp SEE------EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGG-GGGCTTCCEEEC
T ss_pred CCC------CCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHH-HHCCCCCCEEEC
T ss_conf 843------7623098986322771998627874787676665332477618989778465424877-756898798989
Q ss_pred CCCCCCCCCCCC-CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 278888645778-8888866888705667533334565445889998510100123545534556502114777773322
Q 000692 1043 KGCHSLTSISRG-QLPSSLKAIEINNCQILRCVLDDTEDSCTSSSSSSSIIQEKSINSTSAYLDLESLCVFNCPSLTCLS 1121 (1349)
Q Consensus 1043 ~~c~~l~~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 1121 (1349)
++|.....++.. ...++|+.+++.+|.....+ ...+..+++|+.|++.+|.....+|
T Consensus 426 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~----------------------p~~~~~l~~L~~L~L~~N~l~~~~p 483 (768)
T 3rgz_A 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI----------------------PQELMYVKTLETLILDFNDLTGEIP 483 (768)
T ss_dssp CSSEEESCCCGGGGGCTTCCEEECCSSCCCSCC----------------------CGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred CCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCC----------------------CHHHCCCCCCEEEEECCCCCCCCCC
T ss_conf 588466854677744998898989788154718----------------------9788287773299901995137588
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 23678776546887245784202334684223460688126874320111268787344972689998414446788
Q 000692 1122 SRYQLPVTLKRLDIQMCSNFMVLTSECQLPEVLEELKIVSCPKLESIAETFFDNARLRSIQIKDCDNLRSIPKGLHN 1198 (1349)
Q Consensus 1122 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~ 1198 (1349)
..+..+++|+.|++++|.....++..+..+++|++|++++|.....+|..+..+++|+.|++++|.....+|..+..
T Consensus 484 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 484 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred HHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHC
T ss_conf 78816998998975399518968768856899998989789433748877708898998989888468827957860
No 5
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=326.76 Aligned_cols=286 Identities=17% Similarity=0.237 Sum_probs=222.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCC-CCC-EEEEEECCCCCHHHHHHH
Q ss_conf 994024145699999999615999999938999993698749999999972778765-686-499996465008999999
Q 000692 168 EPAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSVED-FDP-KAWVCVSDDFDVLRISKV 245 (1349)
Q Consensus 168 ~~~~~gr~~~~~~i~~~l~~~~~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~-f~~-~~wv~~~~~~~~~~~~~~ 245 (1349)
.+..+||+++++++.++|...+ ..++|+|+||||+||||||++++++.+++. |+. ++|+++++.++...++..
T Consensus 127 tk~~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~ 201 (1221)
T 1vt4_I 127 AKYNVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201 (1221)
T ss_dssp CCSCCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCCC-----CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH
T ss_conf 7877892899999999974358-----97189997699966799999999714988748993899982899999999999
Q ss_pred HHHHCCCC---CC---C-----CCCHHHHHHHHHHHH---CCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEEE
Q ss_conf 99971489---77---7-----578689999999993---4996299991899899424998433477899993899991
Q 000692 246 ILESITLS---PC---E-----LKDLNSVQLKLKEAL---FKKKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTT 311 (1349)
Q Consensus 246 i~~~l~~~---~~---~-----~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~~~iivTt 311 (1349)
++..+... .. + ..+.+.+...+.+.+ .++|+||||||+|+. ..|+.+. +||+|||||
T Consensus 202 Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f~-------pGSRILVTT 272 (1221)
T 1vt4_I 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAFN-------LSCKILLTT 272 (1221)
T ss_dssp HHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHHH-------SSCCEEEEC
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHH--HHHHHHC-------CCEEEEEEC
T ss_conf 9999862272102200134679999999999999999850478879987186818--9998647-------982999944
Q ss_pred CCHHHHHHHCCCCEEECC------CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
Q ss_conf 624588732487438577------99945389999997706899999423999999999991798589999997640388
Q 000692 312 RSVDVALTMGSGGYCELK------LLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARALGGLLRSRQ 385 (1349)
Q Consensus 312 r~~~~~~~~~~~~~~~l~------~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~ 385 (1349)
|++.++..+.....+.++ +|+++|||+||.+.. +.. . .++.. +.|+|+||||+++|+.++.+.
T Consensus 273 Rd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~----~---eeL~~---eICgGLPLALkLaGs~Lr~k~ 341 (1221)
T 1vt4_I 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR----P---QDLPR---EVLTTNPRRLSIIAESIRDGL 341 (1221)
T ss_dssp SCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC----T---TTHHH---HHCCCCHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHC-CCC----H---HHHHH---HHHCCCHHHHHHHHHHHHCCC
T ss_conf 373799866897089946865568969999999999974-998----8---99999---996989999999999984889
Q ss_pred -CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHH-HHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf -8688999871003466899990499999532797777-68997832689996006488999999929978898873099
Q 000692 386 -RFVEWDDILDSKIWDLHDEIEIPSVLKLSYHHLPSHL-KRCFAYCAILPKDYEFEEEELVLLWIAEGLIQPSKDSKQLE 463 (1349)
Q Consensus 386 -~~~~w~~~l~~~~~~~~~~~~~~~~l~~s~~~L~~~~-~~~f~~~a~fp~~~~i~~~~l~~~w~a~g~~~~~~~~~~~~ 463 (1349)
....|... ....+..+|++||+.||++. |.||++||+||+++.|+.+.++.+|+++| +
T Consensus 342 ~s~eeW~~~---------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------e 401 (1221)
T 1vt4_I 342 ATWDNWKHV---------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------K 401 (1221)
T ss_dssp SSHHHHHHC---------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------S
T ss_pred CCHHHHHCC---------CHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC-----------H
T ss_conf 979998669---------86189999999998488999999999971779999877999998766778-----------8
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 999999999986758412589985100346899986
Q 000692 464 DLSSEYFRDLLSRSMLQKSSSSEYKYVMHDLVHDLA 499 (1349)
Q Consensus 464 ~~~~~~~~~L~~~~ll~~~~~~~~~~~~h~lv~~~~ 499 (1349)
+.+..++++|+++||++... ....|+|||++++++
T Consensus 402 edAe~~L~eLvdRSLLq~d~-~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 402 SDVMVVVNKLHKYSLVEKQP-KESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHHHHTSSSSSBCS-SSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHHHHHCCEEEEC-CCCEEEEHHHHHHHH
T ss_conf 99999999999619889868-999898609999985
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=304.07 Aligned_cols=274 Identities=18% Similarity=0.149 Sum_probs=137.6
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC-CCCCCCC----CCCCCCCEEEECCCCCCCCCC
Q ss_conf 22236422799926789532123578845666667755178505899-6446876----799985769871588822453
Q 000692 953 SQKFQKVEHLKIVGCEGFINEICLGKPLEGLQSLTSLKDLLIGNCPT-LVSLPKA----CFLSNLREITIEDCNALTSLT 1027 (1349)
Q Consensus 953 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~-l~~~~~~----~~l~~L~~L~l~~c~~l~~i~ 1027 (1349)
+..+++|+.+++.++.- ....+..+..+++|+.|++++|.. ...++.. ...++|+.|++++ +.+..++
T Consensus 325 ~~~l~~L~~L~l~~n~l------~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~-n~l~~~~ 397 (680)
T 1ziw_A 325 FQWLKCLEHLNMEDNDI------PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK-NKISKIE 397 (680)
T ss_dssp TTTCTTCCEEECCSCCB------CCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTT-SCCCEEC
T ss_pred CCCCCCCCEEECCCCCC------CCCCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCC-CCCCEEC
T ss_conf 24677788887989826------8788557406568728988798014432353220245568676688999-9777677
Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCC--CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCC
Q ss_conf 221246775445751278888645778--888886688870566753333456544588999851010012354553455
Q 000692 1028 DGMIHNNARLEVLRIKGCHSLTSISRG--QLPSSLKAIEINNCQILRCVLDDTEDSCTSSSSSSSIIQEKSINSTSAYLD 1105 (1349)
Q Consensus 1028 ~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1105 (1349)
...+..+++|+.|++++|.....++.. ...++|+.+++++|.... + ....+..+++
T Consensus 398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~---------------------~~~~~~~~~~ 455 (680)
T 1ziw_A 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ-L---------------------TRNSFALVPS 455 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEE-C---------------------CTTTTTTCTT
T ss_pred HHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCE-E---------------------CHHHHHCCCC
T ss_conf 54420778888886778757543575532575461278448997542-2---------------------7645500754
Q ss_pred CCEEECCCCCC--CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC---------CCCCC
Q ss_conf 65021147777--73322236787765468872457842023346842234606881268743201---------11268
Q 000692 1106 LESLCVFNCPS--LTCLSSRYQLPVTLKRLDIQMCSNFMVLTSECQLPEVLEELKIVSCPKLESIA---------ETFFD 1174 (1349)
Q Consensus 1106 L~~L~l~~~~~--l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~---------~~~~~ 1174 (1349)
|+.|++.++.. +...+..+..+++|+.|++++|......+..+..+++|++|++++|.. ..++ ..+..
T Consensus 456 L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~~~~~~~ 534 (680)
T 1ziw_A 456 LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL-ARLWKHANPGGPIYFLKG 534 (680)
T ss_dssp CCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-GGGGSTTSTTSCCCTTTT
T ss_pred CCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCC-CCCCHHHCCCCCCHHHCC
T ss_conf 3101101464422566776455578789998999987767944634553468885889973-000000046774142337
Q ss_pred CCCCCEEEECCCCCCCCCCC-CCCCCCCCCEEEEECCCCCCCCCCCCC--CCCCCEEEECCCCCCCCCCCC----CCCCC
Q ss_conf 78734497268999841444-678889966698622799742388987--685647885147571045432----12654
Q 000692 1175 NARLRSIQIKDCDNLRSIPK-GLHNLSYLHCISIEHCQNLVSFPEDLL--PGAIIEFSVQNCAKLKGLRVG----MFNSL 1247 (1349)
Q Consensus 1175 l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~l~~~----~~~~L 1247 (1349)
+++|+.|++++|. ++.+|. .+..+++|+.|++++| .++.+|...+ .++|+.|+++++ .++.++.. .+++|
T Consensus 535 l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L 611 (680)
T 1ziw_A 535 LSHLHILNLESNG-FDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNL 611 (680)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTC
T ss_pred CCCCCEEECCCCC-CCCCCHHHCCCCCCCCEEECCCC-CCCCCCHHHHCCCCCCCEEECCCC-CCCCCCHHHHCCCCCCC
T ss_conf 9988888899997-88779777346667522389999-777679768378988888989999-68705966830114665
Q ss_pred CEEEECCCCCCC
Q ss_conf 526513688765
Q 000692 1248 QDLLLWQCPGIQ 1259 (1349)
Q Consensus 1248 ~~L~l~~c~~l~ 1259 (1349)
+.+++++|+..-
T Consensus 612 ~~l~l~~N~~~c 623 (680)
T 1ziw_A 612 TELDMRFNPFDC 623 (680)
T ss_dssp SEEECTTCCCCB
T ss_pred CEEECCCCCCCC
T ss_conf 779831897025
No 7
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=1.00 E-value=1 Score=298.73 Aligned_cols=306 Identities=21% Similarity=0.349 Sum_probs=228.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCC-CC-C-CCEEEEEECCCCC--HH
Q ss_conf 999940241456999999996159999999389999936987499999999727787-65-6-8649999646500--89
Q 000692 166 PNEPAVYGRDEDKARVLKIVLKIDPNDDSSFRLIPIVGMGGIGKTTLAREVYNDKSV-ED-F-DPKAWVCVSDDFD--VL 240 (1349)
Q Consensus 166 ~~~~~~~gr~~~~~~i~~~l~~~~~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~-~~-f-~~~~wv~~~~~~~--~~ 240 (1349)
+..+.||||+.+++.+..++.... +..++|+|+|+||+||||||.+++++... .. | +.++|++++.... ..
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~ 196 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLL 196 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHH
T ss_pred CCCCEECCCHHHHHHHHHHHHCCC----CCCCEEEEECCCCCCHHHHHHHHHHCHHHHHHHCCCCEEEEECCCCCHHHHH
T ss_conf 998714052999999999986036----8884699976998988999999983556888528996599977877668899
Q ss_pred HHHHHHHHHCCCC----CCCCCCHHHHHHHHHHHHCC--CCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEEECCH
Q ss_conf 9999999971489----77757868999999999349--96299991899899424998433477899993899991624
Q 000692 241 RISKVILESITLS----PCELKDLNSVQLKLKEALFK--KKYLIVLDDVWSKSYDLWQALKSPFMVGAPDSRIIVTTRSV 314 (1349)
Q Consensus 241 ~~~~~i~~~l~~~----~~~~~~~~~~~~~l~~~l~~--~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~~~~iivTtr~~ 314 (1349)
..+..++..++.. .....+.+.....+...+.+ +++|||+||+|+. ..+. .+ .++++||||||+.
T Consensus 197 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l~----~l---~~~~~ilvTsR~~ 267 (591)
T 1z6t_A 197 MKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVLK----AF---DSQCQILLTTRDK 267 (591)
T ss_dssp HHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHHH----TT---CSSCEEEEEESCG
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCH--HHHH----HH---CCCCEEEEECCCC
T ss_conf 9999999985035565567998899999999999706799869998589987--9998----76---3798699989881
Q ss_pred HHHHHHCCCCEEE---CCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 5887324874385---7799945389999997706899999423999999999991798589999997640388868899
Q 000692 315 DVALTMGSGGYCE---LKLLSDDDCWSVFVKHAFESRDAGTHENLESIRQKVVEKCKGLPLAARALGGLLRSRQRFVEWD 391 (1349)
Q Consensus 315 ~~~~~~~~~~~~~---l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~ 391 (1349)
.++..+.. ..+. +++|+.++++++|...++.. .....+.+.+|+++|+|+|||++++|+.++.+. ..|.
T Consensus 268 ~~~~~~~~-~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~ 339 (591)
T 1z6t_A 268 SVTDSVMG-PKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWE 339 (591)
T ss_dssp GGGTTCCS-CEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHH
T ss_pred HHHHHCCC-CCEEEECCCCCCHHHHHHHHHHHHCCC-----CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC--HHHH
T ss_conf 77773489-826861588999899999999871898-----310459999999995898379999999984484--3599
Q ss_pred HHHHHCCCCC----C-----CCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf 9871003466----8-----999904999995327977776899783268999600648899999992997889887309
Q 000692 392 DILDSKIWDL----H-----DEIEIPSVLKLSYHHLPSHLKRCFAYCAILPKDYEFEEEELVLLWIAEGLIQPSKDSKQL 462 (1349)
Q Consensus 392 ~~l~~~~~~~----~-----~~~~~~~~l~~s~~~L~~~~~~~f~~~a~fp~~~~i~~~~l~~~w~a~g~~~~~~~~~~~ 462 (1349)
..+....... . ....+..++..||+.||++.|.||++||+||+++.|+.+.++.+|.++
T Consensus 340 ~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------ 407 (591)
T 1z6t_A 340 YYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------ 407 (591)
T ss_dssp HHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCC------------
T ss_conf 99999988689876511465437899999999986899999999974556799850899999996658------------
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCC-CCCCCHHHHHHHHHHHCCC
Q ss_conf 99999999999867584125899-8510034689998661134
Q 000692 463 EDLSSEYFRDLLSRSMLQKSSSS-EYKYVMHDLVHDLAQWASG 504 (1349)
Q Consensus 463 ~~~~~~~~~~L~~~~ll~~~~~~-~~~~~~h~lv~~~~~~~~~ 504 (1349)
.+.+..+++.|++++|++....+ ...|.||++++++++....
T Consensus 408 ~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 408 TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCEEEECHHHHHHHHHHHH
T ss_conf 8999999999985958688548985679976899999986535
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=294.57 Aligned_cols=197 Identities=15% Similarity=0.140 Sum_probs=84.1
Q ss_pred CCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCC--CCCCCCCCCCCCC
Q ss_conf 534556502114777773322-2367877654688724578420233468422346068812687--4320111268787
Q 000692 1101 SAYLDLESLCVFNCPSLTCLS-SRYQLPVTLKRLDIQMCSNFMVLTSECQLPEVLEELKIVSCPK--LESIAETFFDNAR 1177 (1349)
Q Consensus 1101 ~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~--l~~~~~~~~~l~~ 1177 (1349)
..+++|+.|++.+|.....++ ..+..+++|+.|++++|......+..+..+++|+.|++.+|.. +..+|..+..+++
T Consensus 402 ~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~ 481 (680)
T 1ziw_A 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481 (680)
T ss_dssp TTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTT
T ss_pred HCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 07788888867787575435755325754612784489975422764550075431011014644225667764555787
Q ss_pred CCEEEECCCCCCCCCC-CCCCCCCCCCEEEEECCCCCCCCCCCC----------CCCCCCEEEECCCCCCCCCCCCC---
Q ss_conf 3449726899984144-467888996669862279974238898----------76856478851475710454321---
Q 000692 1178 LRSIQIKDCDNLRSIP-KGLHNLSYLHCISIEHCQNLVSFPEDL----------LPGAIIEFSVQNCAKLKGLRVGM--- 1243 (1349)
Q Consensus 1178 L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~l~~~~----------~~~~L~~L~l~~c~~l~~l~~~~--- 1243 (1349)
|+.|++++|. ++.+| ..+..+++|+.|++++| .++.++... ..++|+.|+++++. ++.++...
T Consensus 482 L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~ 558 (680)
T 1ziw_A 482 LTILDLSNNN-IANINDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVFKD 558 (680)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred CCEEECCCCC-CCCCCHHHHCCCCCCCEEECCCC-CCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCC-CCCCCHHHCCC
T ss_conf 8999899998-77679446345534688858899-730000000467741423379988888899997-88779777346
Q ss_pred CCCCCEEEECCCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCCCCC-CCCCCCEEEECC
Q ss_conf 26545265136887655689897--556571420288888653122233-357646089837
Q 000692 1244 FNSLQDLLLWQCPGIQFFPEEGL--SANVAYLGISGDNIYKPLVKWGFH-KFTSLTALCING 1302 (1349)
Q Consensus 1244 ~~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~-~l~~L~~L~l~~ 1302 (1349)
+.+|+.|+++++ .++.+|...+ .++|+.|++++| .++.+.+..+. .+++|+.|++++
T Consensus 559 l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~ 618 (680)
T 1ziw_A 559 LFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRF 618 (680)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTT
T ss_pred CCCCCEEECCCC-CCCCCCHHHHCCCCCCCEEECCCC-CCCCCCHHHHCCCCCCCCEEECCC
T ss_conf 667522389999-777679768378988888989999-687059668301146657798318
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=288.84 Aligned_cols=99 Identities=21% Similarity=0.248 Sum_probs=43.8
Q ss_pred CCCCEEEECCCCCCCCC-CCCCCCCCCCEEEECCCCCCCC-CCCCCCCCCCCEEEECCCCCCCCCCHHHHCCCCCCEEEE
Q ss_conf 96529985255554348-5325788665677048977122-601016788758980686688768631103345549974
Q 000692 581 KKLRVLSLRRYYITEVP-ISIGCLRHLRYLNFSDTKIKCL-PESVTSLLNLEILILRDCLHLLKLPSSIGNLVKLLHLDI 658 (1349)
Q Consensus 581 ~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~l-p~~~~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 658 (1349)
+.+++|++++|.+..++ ..|.++.+|++|++++|.++.+ |..+.++++|++|++++|......|..++++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCCCCCCCHHHCCCCCCCCEEEC
T ss_conf 87678878889757737545557766748868877366439777306010688678798563048522078653788870
Q ss_pred CCCCCCCCCC-CCCCCCCCCCCC
Q ss_conf 1887535475-444457678877
Q 000692 659 EGANLLSELP-LRMKELKCLQTL 680 (1349)
Q Consensus 659 ~~~~~~~~~p-~~i~~L~~L~~L 680 (1349)
++|. +..++ ..++++++|++|
T Consensus 112 ~~n~-l~~~~~~~~~~l~~L~~L 133 (606)
T 3vq2_A 112 VETK-LASLESFPIGQLITLKKL 133 (606)
T ss_dssp TTSC-CCCSSSSCCTTCTTCCEE
T ss_pred CCCC-CCCCCCCCCCCCCCCCEE
T ss_conf 3775-554451134898877989
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=283.09 Aligned_cols=100 Identities=16% Similarity=0.251 Sum_probs=75.3
Q ss_pred CCCCEEEECCCCCCCC-CCCCCCCCCCCEEEECCCCCCCC-CCCCCCCCCCCEEEECCCCCCCCCCHHHHCCCCCCEEEE
Q ss_conf 9652998525555434-85325788665677048977122-601016788758980686688768631103345549974
Q 000692 581 KKLRVLSLRRYYITEV-PISIGCLRHLRYLNFSDTKIKCL-PESVTSLLNLEILILRDCLHLLKLPSSIGNLVKLLHLDI 658 (1349)
Q Consensus 581 ~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i~~l-p~~~~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 658 (1349)
..+++|++++|.++.+ |..|+++.+|++|++++|.+..+ |..+.++++|++|++++|......|..++++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 86758981587347179667256766528978898355248511368433676448898565458655234421537652
Q ss_pred CCCCCCCCC-CCCCCCCCCCCCCC
Q ss_conf 188753547-54444576788778
Q 000692 659 EGANLLSEL-PLRMKELKCLQTLT 681 (1349)
Q Consensus 659 ~~~~~~~~~-p~~i~~L~~L~~L~ 681 (1349)
++|. +..+ +..++++++|++|.
T Consensus 113 ~~n~-i~~l~~~~~~~l~~L~~L~ 135 (606)
T 3t6q_A 113 IQTG-ISSIDFIPLHNQKTLESLY 135 (606)
T ss_dssp TTSC-CSCGGGSCCTTCTTCCEEE
T ss_pred CCCC-CCCCCCCHHCCCCCCCEEE
T ss_conf 1267-6657810122378223898
Done!