BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000693
(1349 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P55937|GOGA3_MOUSE Golgin subfamily A member 3 OS=Mus musculus GN=Golga3 PE=1 SV=3
Length = 1487
Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 158/644 (24%), Positives = 285/644 (44%), Gaps = 102/644 (15%)
Query: 678 ELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAEN 737
EL + LE Q S E A+ +++ L +L +A +K +L + E E
Sbjct: 745 ELQARLEELQREADSREDAIHFLQNEKIVLEVALQSAKSDKEELDRGARRLEEDTEETSG 804
Query: 738 LLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLE----QATS 793
LLE LR DL + ++E ++++ A LR+ M+K+K EQ QQ ++E ATS
Sbjct: 805 LLEQLRQDLAVKSNQVEHLQQE--TATLRKQ--MQKVK---EQFVQQKVMVEAYRRDATS 857
Query: 794 RNSELESLHESLMR-ESEMK-LQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEA 851
++ + L + R +SEMK L+ L + E K+ + L+ + + +Q+AE
Sbjct: 858 KDQLINELKATKKRLDSEMKELRQELIKL---QGEKKTVEVEHSRLQKDMSLVHQQMAEL 914
Query: 852 AGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKV 911
G +++E D I + SL+ E++ L E N LK ++
Sbjct: 915 EGHLQSVQKERDEMEIHLQSLKFDKEQMI------------------ALTEANETLKKQI 956
Query: 912 AELQELLDSAISEKEATGQQLASHM---------------NTVTELTEQHSRALELHSAT 956
ELQ+ AI+E++ ++L S + N V+ L+ + AL AT
Sbjct: 957 EELQQEAKKAITEQKQKMKRLGSDLTSAQKEMKTKHKAYENAVSILSRRLQEALASKEAT 1016
Query: 957 EARVKEAEIQ---------LHEAIQRFTQRDIEANNLNEKVSVLEGQIK------SYE-E 1000
+A + + Q LHE I+ ++E N+ + +LE +++ S E E
Sbjct: 1017 DAELNQLRAQSTGGSSDPVLHEKIRAL---EVELQNVGQSKILLEKELQEVITMTSQELE 1073
Query: 1001 QAREA-----STVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLT 1055
++RE + E+R F K+K LE + ++L H + GL ++N L
Sbjct: 1074 ESREKVLELEDELQESRGFRR-----KIKRLEESNKKLALELEHERGKLTGLGQSNAALR 1128
Query: 1056 EDLALYETKLSDLQAKL-------SATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQ 1108
E ++ ET L+ +A L A + K+E Q+ +A++ +K EV L+
Sbjct: 1129 EHNSILETALAKREADLVQLNLQVQAVLQRKEEEDRQMKQLVQALQVSLEKEKMEVNSLK 1188
Query: 1109 TQLEAQLNEKKATEETFKS---EIESLKAQ-AAEKFALETRIKELEELLVNVE------T 1158
Q+ A E FK+ E+ +K + A++ ++T E++EL +
Sbjct: 1189 EQMAAARIEAGHNRRHFKAATLELSEVKKELQAKEHLVQTLQAEVDELQIQDGKHSQEIA 1248
Query: 1159 QFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQI--AQTAIAEQ 1216
QF+ E+ + + +L+ ++ ++ L ++ Q +RE+Q Q + EQ
Sbjct: 1249 QFQTELAEARTQLQLLQKKLDEQMSQQPTGSQEMEDLKWELDQKEREIQSLKQQLDLTEQ 1308
Query: 1217 RGADSQKDSERE-AALKSSLE----ELGAKNKEAALLQNKVAEL 1255
+G + +++ +KS LE +L K+ +LQ KV+EL
Sbjct: 1309 QGKKELEGTQQTLQTIKSELEMVQEDLSETQKDKFMLQAKVSEL 1352
>sp|P10567|MYSP_CAEEL Paramyosin OS=Caenorhabditis elegans GN=unc-15 PE=1 SV=1
Length = 882
Score = 35.0 bits (79), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 147/597 (24%), Positives = 264/597 (44%), Gaps = 116/597 (19%)
Query: 586 SELEEELRITKE--------RSAEDEDRANMSHQ---RSIELEDLFQTSHSKLEGTGKRV 634
+ LE+++R+ +E R+ + +RA++S Q + LED T+ S++E KR
Sbjct: 52 TRLEDKIRLLQEDLESERELRNRVERERADLSVQVIALTDRLEDAEGTTDSQIESNRKRE 111
Query: 635 NELELLLEAEKYRIQELEEQISKLEKKCEEAEAGS--------KQYSDKVCELASELEAF 686
EL SKL K EE++ S K++ D + ++E
Sbjct: 112 GEL------------------SKLRKLLEESQLESEDAMNVLRKKHQDSCLDYQDQIEQL 153
Query: 687 QARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLR--- 743
Q + + ++ Q + ELT +++ +K + + + + E N +E L
Sbjct: 154 QKKNAKIDRERQRVQHEVIELTATIDQLQKDKHTAEKAAERFEAQANELANKVEDLNKHV 213
Query: 744 NDLNMTQERLESIEKDLKAAGLRET-------DVMEKLK-SAEEQLEQQTRVLEQATSRN 795
NDL ++RL++ DL L+E D ++ +K + +QLE+ R LE A
Sbjct: 214 NDLAQQRQRLQAENNDL----LKEVHDQKVQLDNLQHVKYTLAQQLEEARRRLEDAERER 269
Query: 796 SELES-LH---------------ESLMR-ESEMKLQDALANITSR----DSEAKSFSEKL 834
S+L+S LH ES+ R ++E KL A IT D+E E++
Sbjct: 270 SQLQSQLHQVQLELDSVRTALDEESIARSDAEHKLNLANTEITQWKSKFDAEVALHHEEV 329
Query: 835 KNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQV---VEANNKAN 891
++L KM ++Q +Y +E+++ K++ LE LQ +V + KA
Sbjct: 330 EDLRK--KMLQKQ-----AEY---EEQIEIMLQKISQLEKAKSRLQSEVEVLIVDLEKAQ 379
Query: 892 NSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLAS------HMNTVTELTEQ 945
N+ + LL QL+ +V EL+ +D E EA ++L + M + E +
Sbjct: 380 NTIA---LLERAREQLERQVGELKVRIDEITVELEAAQRELRAVNAELQKMKHLYEKAVE 436
Query: 946 HSRAL---------ELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIK 996
AL ELH A EA + +A +LHE D+E L ++ L+ +K
Sbjct: 437 QKEALARENKKLHDELHEAKEA-LADANRKLHEL-------DLENARLAGEIRELQTALK 488
Query: 997 SYEEQAREASTVAETRKFELEETLLKL-KNLESTVEELQTRSGHFERESGGLVETNLKLT 1055
+ Q R+A A+ EL+ +++ + L+ EE++ + + E L+ L
Sbjct: 489 EADAQRRDAENRAQRALAELQALRIEMERRLQEKEEEMEALRKNLQFEIDRLIAA---LA 545
Query: 1056 EDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQLE 1112
+ A ++++S L+ K A I E + TV+ L+ + + +K + +++ LQ LE
Sbjct: 546 DAEARMKSEISRLKKKYQAEIAELEMTVDNLNRANIEAQKTIKKQSEQLKILQASLE 602
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.302 0.120 0.292
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 414,516,114
Number of Sequences: 539616
Number of extensions: 17378764
Number of successful extensions: 200941
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1373
Number of HSP's successfully gapped in prelim test: 6491
Number of HSP's that attempted gapping in prelim test: 98202
Number of HSP's gapped (non-prelim): 41176
length of query: 1349
length of database: 191,569,459
effective HSP length: 130
effective length of query: 1219
effective length of database: 121,419,379
effective search space: 148010223001
effective search space used: 148010223001
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 68 (30.8 bits)